BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008991
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/550 (48%), Positives = 375/550 (68%), Gaps = 15/550 (2%)
Query: 1 MFYRNELNGPGTSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQA 60
MFY+ A + +++ L+LIDTPGHVDFSYEVSR+LAAC+GALL++DA+QG++A
Sbjct: 63 MFYK----------AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEA 112
Query: 61 QTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLE 120
QTVANF+ A E +L IIPVINKID P+AD DRVK Q++ + LDP EA+L SAK G G+E
Sbjct: 113 QTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIE 172
Query: 121 HVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQ 180
+L A++ RIPPP+G L+ L+ DSYYD Y+G + V + DG ++ GDKI +TG+
Sbjct: 173 EILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGK 232
Query: 181 AYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKS-IVEPLPGFKP 239
YE+ +VG P++T L G VGY+ ++ ++ RIGDT+ H K+ EP+PGF+P
Sbjct: 233 EYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQP 292
Query: 240 AKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDV 299
AK MV++G+YPA+ + +E L A+E+ NDA++ E+S A HM++
Sbjct: 293 AKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEI 352
Query: 300 FHQRLEQEYGAHVISTVPTVPYIF--EYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVA 357
+RLE+EYG +I+T P V Y +++D EV+NP P N + EP V+
Sbjct: 353 VQERLEREYGVKIITTAPNVIYRVKKKFTD-EVIEVRNPMDFPDN-AGLIEYVEEPFVLV 410
Query: 358 TIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGY 417
TII P EYVG +I LC E+RG Q +++D +++Y +PL EI+VDF++++KS++ G+
Sbjct: 411 TIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGF 470
Query: 418 ASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFE 477
AS+DYE Y+ +D++KL +L+N +PVDA++ IVH +AQ+ R + EKL++ I RQ+FE
Sbjct: 471 ASYDYEFIGYRPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRETIPRQLFE 530
Query: 478 ITIQAAIGSKVIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQ 537
+ IQ A G KVIA E I +R NV AKCYGGDVTRK+KLLE QKEGKKRMK+ G V +PQ
Sbjct: 531 VHIQVAKGGKVIASERIKPLRANVTAKCYGGDVTRKKKLLENQKEGKKRMKQFGKVQLPQ 590
Query: 538 EAFHQLLRVS 547
EAF +L+V
Sbjct: 591 EAFLSVLKVE 600
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/537 (48%), Positives = 368/537 (68%), Gaps = 5/537 (0%)
Query: 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73
+A + +++ L+LIDTPGHVDFSYEVSR+LAAC+GALL++DA+QG++AQTVANF+ A E +
Sbjct: 66 KAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133
L IIPVINKID P+AD DRVK Q++ + LDP EA+L SAK G G+E +L A++ RIPPP
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185
Query: 134 RGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE 193
+G L+ L+ DSYYD Y+G + V + DG ++ GDKI +TG+ YE+ +VG P+
Sbjct: 186 KGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTPK 245
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKS-IVEPLPGFKPAKHMVFSGLYPAD 252
T L G VGY+ ++ ++ RIGDT+ H K+ EP+PGF+PAK V++G+YPA+
Sbjct: 246 XTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPXVYAGIYPAE 305
Query: 253 GSDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHV 312
+ +E L A+E+ NDA++ E+S A H ++ +RLE+EYG +
Sbjct: 306 DTTYEELRDALEKYAINDAAIVYEPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVKI 365
Query: 313 ISTVPTVPYIF--EYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVI 370
I+T P V Y +++D EV+NP P N + EP V+ TII P EYVG +I
Sbjct: 366 ITTAPNVIYRVKKKFTD-EVIEVRNPXDFPDN-AGLIEYVEEPFVLVTIITPKEYVGPII 423
Query: 371 TLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430
LC E+RG Q +++D +++Y PL EI+VDF++++KS++ G+AS+DYE Y+ +
Sbjct: 424 QLCQEKRGIQKNXTYLDPNTVYLEYEXPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483
Query: 431 DMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIA 490
D++KL +L+N +PVDA++ IVH +AQ+ R + EKL++ I RQ+FE+ IQ A G KVIA
Sbjct: 484 DLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRETIPRQLFEVHIQVAKGGKVIA 543
Query: 491 RETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRVS 547
E I +R NV AKCYGGDVTRK+KLLE QKEGKKR K+ G V +PQEAF +L+V
Sbjct: 544 SERIKPLRANVTAKCYGGDVTRKKKLLENQKEGKKRXKQFGKVQLPQEAFLSVLKVE 600
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 248/534 (46%), Positives = 355/534 (66%), Gaps = 4/534 (0%)
Query: 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73
+A + ++ LN IDTPGHVDFSYEVSRSLAAC+GALLVVDA QGV+AQT+AN Y A E +
Sbjct: 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133
L ++PV+NKID P ADP+RV +++ + +D ++A+ SAKTG G++ VL ++ IPPP
Sbjct: 124 LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183
Query: 134 RGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE 193
G L+ L++DS++D Y GV+ + + +GTLRKGDK+ +TGQ Y +GI P+
Sbjct: 184 EGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK 243
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVE-PLPGFKPAKHMVFSGLYPAD 252
L G+VG++V ++ A +GDTL ++ E LPGFK K V++GL+P
Sbjct: 244 QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVS 303
Query: 253 GSDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHV 312
D+E A+ +L+ NDAS+ E+S+A HM++ +RLE+EY +
Sbjct: 304 SDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDL 363
Query: 313 ISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITL 372
I+T PTV Y E + V +P+ LP+ + EP +++P Y+G+VITL
Sbjct: 364 ITTAPTVVYEVETTSREVIYVDSPSKLPA--VNNIYELREPIAECHMLLPQAYLGNVITL 421
Query: 373 CSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADM 432
C E+RG Q + +Q A + Y +P+ E+V+DF++ LKS + GYAS DY +Q +DM
Sbjct: 422 CVEKRGVQTNMVYHGNQVA-LTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM 480
Query: 433 VKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARE 492
V++D+L+NG+ VDA+A I H +Q GRELVEK+K I RQ F+I IQAAIG+ +IAR
Sbjct: 481 VRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARS 540
Query: 493 TISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546
T+ +RKNVLAKCYGGD++RK+KLL+KQKEGKKRMK++G+V++PQEAF +L V
Sbjct: 541 TVKQLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHV 594
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/485 (43%), Positives = 309/485 (63%), Gaps = 4/485 (0%)
Query: 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73
+A + ++ LN IDTPGHVDFSYEVSRSLAAC+GALLVVDA QGV+AQT+AN Y A E +
Sbjct: 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133
L ++PV+NKID P ADP+RV +++ + +D ++A+ SAKTG G++ VL ++ IPPP
Sbjct: 124 LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183
Query: 134 RGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE 193
G L+ L++DS++D Y GV+ + + +GTLRKGDK+ +TGQ Y +GI P+
Sbjct: 184 EGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK 243
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVE-PLPGFKPAKHMVFSGLYPAD 252
L G+VG++V ++ A +GDTL ++ E LPGFK K V++GL+P
Sbjct: 244 QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVS 303
Query: 253 GSDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHV 312
D+E A+ +L+ NDAS+ E+S+A HM++ +RLE+EY +
Sbjct: 304 SDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDL 363
Query: 313 ISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITL 372
I+T PTV Y E + V +P+ LP+ + EP +++P Y+G+VITL
Sbjct: 364 ITTAPTVVYEVETTSREVIYVDSPSKLPA--VNNIYELREPIAECHMLLPQAYLGNVITL 421
Query: 373 CSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADM 432
C E+RG Q + +Q A + Y +P+ E+V+DF++ LKS + GYAS DY +Q +DM
Sbjct: 422 CVEKRGVQTNMVYHGNQVA-LTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM 480
Query: 433 VKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARE 492
V++D+L+NG+ VDA+A I H +Q GRELVEK+K I RQ F+I IQAAIG+ +IAR
Sbjct: 481 VRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARS 540
Query: 493 TISAM 497
T+ +
Sbjct: 541 TVKQL 545
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN 81
++ +DTPGH F+ +R A +LVV A GV QT+ A +++ ++ +N
Sbjct: 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVN 111
Query: 82 KIDQPTADPDRVKAQLKSMFDLDP------SEALLTSAKTGQGLEHVLPAVI--ERIPPP 133
KID+P ADPDRVK +L S + + P S+ + SAK G G++ +L A++ +
Sbjct: 112 KIDKPEADPDRVKNEL-SQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLEL 170
Query: 134 RGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGD 171
+ + +++S+ D+ +G + V V +GTL KGD
Sbjct: 171 KAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGD 208
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII 77
PS + +DTPGH FS +R +LVV A GV QTV + A ++ + I+
Sbjct: 49 PSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV 108
Query: 78 PVINKIDQPTADPDRVKAQLKSMFDL------DPSEALLTSAKTGQGLEHVLPAVI---- 127
INK D+ ADP++VK +L + +D+ +A+ SA TG+ + + A I
Sbjct: 109 LAINKCDKAEADPEKVKKELLA-YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167
Query: 128 --ERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKG 170
E P G + + +++S+ D+ +G + + GTLRKG
Sbjct: 168 MLELKADPTGAVEGT----VIESFTDKGRGPVTTAIIQRGTLRKG 208
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIP 78
+SFL+NLID+PGHVDFS EV+ +L GAL+VVD +GV QT A + +
Sbjct: 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVV 155
Query: 79 VINKIDQ 85
VINK+D+
Sbjct: 156 VINKVDR 162
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIP 78
+SFL+NLID+PGHVDFS EV+ +L GAL+VVD +GV QT A + +
Sbjct: 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVV 155
Query: 79 VINKIDQ 85
VINK+D+
Sbjct: 156 VINKVDR 162
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+ +DTPGH F+ +R +LVV A GV QTV A + + II INK
Sbjct: 57 ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINK 116
Query: 83 IDQPTADPDRVKAQLKSMFDLDPSEA------LLTSAKTGQGLEHVLPAVI 127
+D+P A+PDRV +L ++L P E SAKT +GL+H+L ++
Sbjct: 117 MDKPEANPDRVMQELME-YNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL 166
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGH+DF EV RSL+ GA+L++ A GVQAQT F+ + + I INK
Sbjct: 69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINK 128
Query: 83 IDQPTADPDRVKAQLK 98
IDQ D V +K
Sbjct: 129 IDQNGIDLSTVYQDIK 144
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP + + P EY+G VI + RRGQ L + + + +PL E+ + +L+
Sbjct: 603 EPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLR 660
Query: 412 SLTSGYASFDYEDSEYQQADMVKLDILLNGQ 442
S T G SF YQ+ + L+ GQ
Sbjct: 661 SKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ 691
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP + + P EY+G VI + RRGQ L + + + +PL E+ + +L+
Sbjct: 603 EPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLR 660
Query: 412 SLTSGYASFDYEDSEYQQADMVKLDILLNGQ 442
S T G SF YQ+ + L+ GQ
Sbjct: 661 SKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ 691
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP + + P EY+G VI + RRGQ L + + + +PL E+ + +L+
Sbjct: 603 EPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLR 660
Query: 412 SLTSGYASFDYEDSEYQQADMVKLDILLNGQ 442
S T G SF YQ+ + L+ GQ
Sbjct: 661 SKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ 691
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 327 DGSKAEVQNP---------ASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERR 377
DGS AEV + ++ +K EP + + P EY+G VI + RR
Sbjct: 569 DGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARR 628
Query: 378 GQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQ 429
GQ L + + + +PL E+ + +L+S T G SF YQ+
Sbjct: 629 GQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLRSKTQGRGSFVMFFDHYQE 678
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 327 DGSKAEVQNP---------ASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERR 377
DGS AEV + ++ +K EP + + P EY+G VI + RR
Sbjct: 569 DGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARR 628
Query: 378 GQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADMVKLDI 437
GQ L + + + +PL E+ + +L+S T G SF YQ+ +
Sbjct: 629 GQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEK 686
Query: 438 LLNGQ 442
L+ GQ
Sbjct: 687 LIKGQ 691
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 46 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 105
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 106 MDKTGAD 112
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 210 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 269
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 270 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 329
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 330 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 385
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 386 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 442
Query: 314 STVPTVPY 321
P V Y
Sbjct: 443 VGKPQVAY 450
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP + + P EY+G VI + RRGQ L + + + +PL E+ + +L+
Sbjct: 570 EPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLR 627
Query: 412 SLTSGYASFDYEDSEYQQ 429
S T G SF YQ+
Sbjct: 628 SKTQGRGSFVMFFDHYQE 645
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V A GVQ Q+ + A + ++ I +NK
Sbjct: 84 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNK 143
Query: 83 IDQPTADPDRVKAQLKSMFDLDP 105
+D+ A+ +V Q+K+ +P
Sbjct: 144 MDRMGANFLKVVNQIKTRLGANP 166
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 344 KKRVTACWEPTVVATIIIPSEYVGSVITLCSERRG----QQLEYSFIDSQRAFMKYCLPL 399
KK EP + + P E G VI S RRG Q+ E + + + +PL
Sbjct: 606 KKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVK-----IHAEVPL 660
Query: 400 REIVVDFYNELKSLTSGYASFDYEDSEYQQA 430
E+ + +L+SLT G AS+ E +Y +A
Sbjct: 661 SEMF-GYATQLRSLTKGRASYTMEFLKYDEA 690
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RS+ GA++V A GVQ Q+ + A + ++ I +NK
Sbjct: 83 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNK 142
Query: 83 IDQPTADPDRVKAQLKSMFDLDP 105
+D+ A+ +V Q+K+ +P
Sbjct: 143 MDRMGANFLKVVNQIKTRLGANP 165
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 344 KKRVTACWEPTVVATIIIPSEYVGSVITLCSERRG----QQLEYSFIDSQRAFMKYCLPL 399
KK EP + + P E G VI S RRG Q+ E + + + +PL
Sbjct: 605 KKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVK-----IHAEVPL 659
Query: 400 REIVVDFYNELKSLTSGYASFDYEDSEYQQA 430
E+ + +L+SLT G AS+ E +Y +A
Sbjct: 660 SEMF-GYATQLRSLTKGRASYTMEFLKYDEA 689
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN 81
L+NL+DTPGH DFS + R+L A L+V+DAA+GV+ +T + + I+ +N
Sbjct: 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMN 142
Query: 82 KIDQPTADP----DRVKAQLK 98
K+D+ DP D V+ +LK
Sbjct: 143 KLDRDIRDPMELLDEVENELK 163
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN 81
L+NL+DTPGH DFS + R+L A L+V+DAA+GV+ +T + + I+ +N
Sbjct: 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMN 142
Query: 82 KIDQPTADP----DRVKAQLK 98
K+D+ DP D V+ +LK
Sbjct: 143 KLDRDIRDPMELLDEVENELK 163
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+ID PGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP + + P EY+G VI + RRGQ L + + + +PL E+ + +L+
Sbjct: 603 EPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLR 660
Query: 412 SLTSGYASFDYEDSEYQQADMVKLDILLNGQ 442
S T G SF YQ+ + L+ GQ
Sbjct: 661 SKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ 691
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+ID PGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 90/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL + SV+ T +++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELS---LEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP + + P EY+G VI + RRGQ L + + + +PL E+ + +L+
Sbjct: 603 EPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLR 660
Query: 412 SLTSGYASFDYEDSEYQQADMVKLDILLNGQ 442
S T G SF YQ+ + L+ GQ
Sbjct: 661 SKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ 691
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+ID PGHVDF+ EV RS+ GA++V D++QGV+ Q+ + A + ++ I NK
Sbjct: 79 INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANK 138
Query: 83 IDQPTAD 89
+D+ AD
Sbjct: 139 MDKTGAD 145
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 26/248 (10%)
Query: 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------------- 136
V A K DL + L SA +G++ +L AV++ +P P I
Sbjct: 243 VAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIH 302
Query: 137 --INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE- 193
N L L D Y G + + V GTL G + + G+ + + MH
Sbjct: 303 PDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANH 362
Query: 194 LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG 253
L G +G VV KE GDTL + L + + ++ + P
Sbjct: 363 REEVEELKAGDLGAVV----GLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 254 SDFEVLNHAIERLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVI 313
+D E L+ A+ RL D + V+ T H+++ RL++E+
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETG---QTIISGMGELHLEIIVDRLKREFKVDAN 475
Query: 314 STVPTVPY 321
P V Y
Sbjct: 476 VGKPQVAY 483
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP + + P EY+G VI + RRGQ L + + + +PL E+ + +L+
Sbjct: 603 EPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLR 660
Query: 412 SLTSGYASFDYEDSEYQQADMVKLDILLNGQ 442
S T G SF YQ+ + L+ GQ
Sbjct: 661 SKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ 691
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVI 80
+L+NL+DTPGH DF+ + R+L A AL V+DAA+GV+ +T+ + I I
Sbjct: 82 YLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRHTPIXTFI 141
Query: 81 NKIDQPTADPDRVKAQLKSMFDLD--PSEALLTSAKTGQGLEHVLPAVI 127
NK D+ T + +++S+ + P + K +G+ H++ I
Sbjct: 142 NKXDRDTRPSIELLDEIESILRIHCAPVTWPIGXGKYFKGIYHLIEDAI 190
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN 81
++NL+DTPGH DFS + R L A AL+V+DAA+GV+AQT + ++ +N
Sbjct: 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVN 160
Query: 82 KIDQPTADPDRVKAQLKSMFDLD 104
K+D+ P V A ++ ++
Sbjct: 161 KMDREALHPLDVMADIEQHLQIE 183
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV 79
++ +N+IDTPGHVDF+ EV RSL GA++V GV+ Q+ + A + + I
Sbjct: 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVY 143
Query: 80 INKIDQPTADPDRVKAQLKSMFDLDP 105
+NK+D+ A+ RV Q+K P
Sbjct: 144 VNKMDRQGANFLRVVEQIKKRLGHTP 169
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 109/296 (36%), Gaps = 44/296 (14%)
Query: 108 ALLTSAKTGQGLEHVLPAVIERIPPP------RGII--------------NSSLRMLLLD 147
A+ S+ +G+ VL AVI+ +P P +G+ N L
Sbjct: 267 AVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFK 326
Query: 148 SYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVG 206
D + G + V G L GD + ++ G+ + + MH + + G +
Sbjct: 327 IATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIA 386
Query: 207 YVVTGMRSTKEARIGDTLYHNKSIVEP--LPGFKPAKHMVFSGLYPADGSDFEVLNHAIE 264
++ GM K+ GDTL SI +P L + ++ + P +D E + A+
Sbjct: 387 ALI-GM---KDVTTGDTLC---SIEKPIILERMDFPEPVISVAVEPKTKADQEKMGIALG 439
Query: 265 RLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVISTVPTVPYIFE 324
+L D S V + + H+D+ R+++E+G P V Y E
Sbjct: 440 KLAQEDPSFRVKTDEESG---QTIISGMGELHLDIIVDRMKREFGVEANIGKPQVAY-RE 495
Query: 325 YSDGSKAEVQNPASLPSNPKKRVTACW----------EPTVVATIIIPSEYVGSVI 370
E++ S + + CW + + ++ +E VG V+
Sbjct: 496 TITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVV 551
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRG--QQLEYSFIDSQRAFMKYCLPLREIVVDFYNE 409
EP + ++ P +Y+G V+ + RRG Q +E + ++ +PL E+ + +
Sbjct: 620 EPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTV---SGKVIRAEVPLGEM-FGYATD 675
Query: 410 LKSLTSGYASFDYEDSEYQQA 430
++S++ G AS+ E S+Y +A
Sbjct: 676 VRSMSQGRASYSMEFSKYAEA 696
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RSL GA+ V+DA GV+ QT + A + I +NK
Sbjct: 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNK 136
Query: 83 IDQPTAD 89
+D+ A+
Sbjct: 137 MDKLGAN 143
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 111/297 (37%), Gaps = 48/297 (16%)
Query: 109 LLTSAKTGQGLEHVLPAVIERIPPP---RGII-----------------NSSLRMLLLDS 148
L +A +G++ +L AVI+ +P P + II ++ L
Sbjct: 257 LCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKV 316
Query: 149 YYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE-LTPTGVLLTGQVGY 207
D Y G + V GT+ G + ++ G+ + + MH + +G +
Sbjct: 317 MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAA 376
Query: 208 VVTGMRSTKEARIGDTLYHNKS--IVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIER 265
V G++ T GDTL K+ I+E + +P H+ + P +D + + A+ +
Sbjct: 377 AV-GLKDTG---TGDTLCGEKNDIILESMEFPEPVIHL---SVEPKSKADQDKMTQALVK 429
Query: 266 LTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVISTVPTVPYIFEY 325
L D + + T H+D+ R+++E+ P V Y +
Sbjct: 430 LQEEDPTFHAHTDEETG---QVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 326 SDGSKAEVQNPASLPSNPK------------KRVTACWE-PTVVATIIIPSEYVGSV 369
S A+VQ S S + A +E + ++P EY+ SV
Sbjct: 487 K--SSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVDF+ EV RSL GA+ V+DA GV+ QT + A + I +NK
Sbjct: 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNK 136
Query: 83 IDQPTAD 89
+D+ A+
Sbjct: 137 MDKLGAN 143
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 111/297 (37%), Gaps = 48/297 (16%)
Query: 109 LLTSAKTGQGLEHVLPAVIERIPPP---RGII-----------------NSSLRMLLLDS 148
L +A +G++ +L AVI+ +P P + II ++ L
Sbjct: 257 LCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKV 316
Query: 149 YYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE-LTPTGVLLTGQVGY 207
D Y G + V GT+ G + ++ G+ + + MH + +G +
Sbjct: 317 MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAA 376
Query: 208 VVTGMRSTKEARIGDTLYHNKS--IVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIER 265
V G++ T GDTL K+ I+E + +P H+ + P +D + + A+ +
Sbjct: 377 AV-GLKDTG---TGDTLCGEKNDIILESMEFPEPVIHL---SVEPKSKADQDKMTQALVK 429
Query: 266 LTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVISTVPTVPYIFEY 325
L D + + T H+D+ R+++E+ P V Y +
Sbjct: 430 LQEEDPTFHAHTDEETG---QVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 326 SDGSKAEVQNPASLPSNPK------------KRVTACWE-PTVVATIIIPSEYVGSV 369
S A+VQ S S + A +E + ++P EY+ SV
Sbjct: 487 K--SSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVD + EV RSL GA+ V+DA GV+ QT + A + I +NK
Sbjct: 77 VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNK 136
Query: 83 IDQPTAD 89
+D+ A+
Sbjct: 137 MDKLGAN 143
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 111/297 (37%), Gaps = 48/297 (16%)
Query: 109 LLTSAKTGQGLEHVLPAVIERIPPP---RGII-----------------NSSLRMLLLDS 148
L +A +G++ +L AVI+ +P P + II ++ L
Sbjct: 257 LCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKV 316
Query: 149 YYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE-LTPTGVLLTGQVGY 207
D Y G + V GT+ G + ++ G+ + + MH + +G +
Sbjct: 317 MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAA 376
Query: 208 VVTGMRSTKEARIGDTLYHNKS--IVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIER 265
V G++ T GDTL K+ I+E + +P H+ + P +D + + A+ +
Sbjct: 377 AV-GLKDTG---TGDTLCGEKNDIILESMEFPEPVIHL---SVEPKSKADQDKMTQALVK 429
Query: 266 LTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVISTVPTVPYIFEY 325
L D + + T H+D+ R+++E+ P V Y +
Sbjct: 430 LQEEDPTFHAHTDEETG---QVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 326 SDGSKAEVQNPASLPSNPK------------KRVTACWE-PTVVATIIIPSEYVGSV 369
S A+VQ S S + A +E + ++P EY+ SV
Sbjct: 487 K--SSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
+N+IDTPGHVD + EV RSL GA+ V+DA GV+ QT + A + I +NK
Sbjct: 77 VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNK 136
Query: 83 IDQPTAD 89
+D+ A+
Sbjct: 137 MDKLGAN 143
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 111/297 (37%), Gaps = 48/297 (16%)
Query: 109 LLTSAKTGQGLEHVLPAVIERIPPP---RGII-----------------NSSLRMLLLDS 148
L +A +G++ +L AVI+ +P P + II ++ L
Sbjct: 257 LCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKV 316
Query: 149 YYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE-LTPTGVLLTGQVGY 207
D Y G + V GT+ G + ++ G+ + + MH + +G +
Sbjct: 317 MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAA 376
Query: 208 VVTGMRSTKEARIGDTLYHNKS--IVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIER 265
V G++ T GDTL K+ I+E + +P H+ + P +D + + A+ +
Sbjct: 377 AV-GLKDTG---TGDTLCGEKNDIILESMEFPEPVIHL---SVEPKSKADQDKMTQALVK 429
Query: 266 LTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVISTVPTVPYIFEY 325
L D + + T H+D+ R+++E+ P V Y +
Sbjct: 430 LQEEDPTFHAHTDEETG---QVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 326 SDGSKAEVQNPASLPSNPK------------KRVTACWE-PTVVATIIIPSEYVGSV 369
S A+VQ S S + A +E + ++P EY+ SV
Sbjct: 487 K--SSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESEL 74
A ++ + L+D PGH D V + AL+VVDA +G + QT + + +
Sbjct: 67 AFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI 126
Query: 75 TIIPVINKIDQPTADPDR-----VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129
II VI K D + + +K+ L+S +L S + SAKTG G++ + +I
Sbjct: 127 PIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT 186
Query: 130 IPPPRGIIN--SSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKI 173
+ I N S +M L ++ + G + + G ++ GD++
Sbjct: 187 LNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDEL 232
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 32/235 (13%)
Query: 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESE 73
+ +ID PGH DF + + A+LVV A +G V+ QT + LA
Sbjct: 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG 143
Query: 74 L-TIIPVINKID--QPTADPDRVKAQLKSM--------FDLDPSEALLTSAKTGQGLEH- 121
L +I +NK+D +P D R K + + F+ + + A +G + H
Sbjct: 144 LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203
Query: 122 ----------VLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGD 171
L ++++ P ++ LR+ + D Y G + V G L+ GD
Sbjct: 204 SENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGD 263
Query: 172 KISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYH 226
KI G+ E+ + H ++ +G+ V G+ K+ + GD + H
Sbjct: 264 KIVFMPAGKVGEVRSIETHHTKMDKAEP--GDNIGFNVRGVEK-KDIKRGDVVGH 315
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 334 QNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLC---------SERRGQQLEYS 384
NP ++ R+ W PT +A P +V + C R GQ+ E +
Sbjct: 317 NNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKN 376
Query: 385 --FIDSQRAFMKYCLPLREIVVDFYNELKSL 413
F+ + P++ + V+ YNE L
Sbjct: 377 PQFLKQGDVAIVKFKPIKPLCVEKYNEFPPL 407
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 32/235 (13%)
Query: 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESE 73
++ +ID PGH DF + + A+LVV A +G + QT + LA
Sbjct: 87 YVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMG 146
Query: 74 L-TIIPVINKIDQPTADPDR---------VKAQLKSM-FDLDPSEALLTSAKTGQGLEHV 122
+ II +NK+D P + D+ +K +K + + +D + SA G L
Sbjct: 147 IEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIER 206
Query: 123 LPAV-----------IERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGD 171
P + ++++ PP ++ LR+ + + Y G + V G LR GD
Sbjct: 207 SPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGD 266
Query: 172 KISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYH 226
K+ G E+ + + + +L +G+ V G+ S + + GD H
Sbjct: 267 KVVFMPPGVVGEVRSIEMHYQQLQQAE--PGDNIGFAVRGV-SKSDIKRGDVAGH 318
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 32/235 (13%)
Query: 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESE 73
++ +ID PGH DF + + A+LVV A +G + QT + LA
Sbjct: 84 YVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMG 143
Query: 74 L-TIIPVINKIDQPTADPDR---------VKAQLKSM-FDLDPSEALLTSAKTGQGLEHV 122
+ II +NK+D P + D+ +K +K + + +D + SA G L
Sbjct: 144 IEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIER 203
Query: 123 LPAV-----------IERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGD 171
P + ++++ PP ++ LR+ + + Y G + V G LR GD
Sbjct: 204 SPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGD 263
Query: 172 KISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYH 226
K+ G E+ + + + +L +G+ V G+ S + + GD H
Sbjct: 264 KVVFMPPGVVGEVRSIEMHYQQLQQAE--PGDNIGFAVRGV-SKSDIKRGDVAGH 315
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 81 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 140
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 141 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 199
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 200 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 255
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D PGH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 85 QPTADP---DRVKAQLKSMFD----------------LDPSEALLTSAKTGQG------- 118
DP D V+ +++ + + L E + + KT +G
Sbjct: 140 M-VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK 198
Query: 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKIS 174
+ +L A+ E IP P ++ M + D + +G + + G ++ GD++
Sbjct: 199 IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 25 LIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKID 84
L+D PG+ DF E+ +L A AL+ V A GVQ T + +A L + V+ K+D
Sbjct: 78 LLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLD 137
Query: 85 Q 85
+
Sbjct: 138 K 138
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 20/177 (11%)
Query: 151 DEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPEL-TPTGVLL----TGQV 205
D + G + ++ + G L+ GD + S A GQ + P L P G L +
Sbjct: 294 DPFMGQVAYLRLYRGRLKPGDSLQSEA-GQ--------VRLPHLYVPMGKDLLEVEEAEA 344
Query: 206 GYVVTGMRSTKEARIGDTLYHN-KSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIE 264
G+V+ G+ + G L+ K E +P + V L+P +D L A+
Sbjct: 345 GFVL-GVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEALR 403
Query: 265 RLTCNDASVSVTKETSTAXXXXXXXXXXXXXHMDVFHQRLEQEYGAHVISTVPTVPY 321
+L D S+ + ++ T H+ +RL Q+YG V +VP VPY
Sbjct: 404 KLLEEDPSLKLERQEETGELLLWGHGEL---HLATAKERL-QDYGVEVEFSVPKVPY 456
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELK 411
EP ++ P E VG V++ RRG+ L + + + +PL E V+++Y L
Sbjct: 573 EPIYRLKVLAPQERVGDVLSDLQARRGRILGME-QEGALSVVHAEVPLAE-VLEYYKALP 630
Query: 412 SLTSGYASFDYEDSEYQQ 429
LT G ++ E S Y +
Sbjct: 631 GLTGGAGAYTLEFSHYAE 648
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 25 LIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKI 83
+ DTPGH ++ + + C A+++VDA GVQ QT + Y+A + I+ INK
Sbjct: 108 IADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKX 167
Query: 84 DQPTADPDRVKAQLKSMF 101
D D +RV +K+ +
Sbjct: 168 DLNGFD-ERVFESIKADY 184
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV-INKID 84
+D GH D+ + A GA+LVV AA G QT + LA + + I V +NK+D
Sbjct: 80 VDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVFMNKVD 139
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--SELTIIPVI 80
++ ID+PGH + + GA+LV+ A + +A + + II
Sbjct: 86 VSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQ 145
Query: 81 NKIDQPTADPDRVKA-----QLKSMFDLDPSE---ALLTSAKTGQGLEHVLPAVIERIPP 132
NKI+ D+ KA Q+K +E + SA G ++ ++ A+ E IP
Sbjct: 146 NKIELV----DKEKALENYRQIKEFIKGTVAENAPIIPISALHGANIDVLVKAIEEFIPT 201
Query: 133 PRGIINSSLRMLLLDSY--------YDEYKGVICHVAVVDGTLRKGDKI 173
P+ N +ML+L S+ ++ G + ++V G L+ GD+I
Sbjct: 202 PKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEI 250
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
L IDTPGH F+ R A A+L+VD +G + QT + + NK
Sbjct: 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANK 131
Query: 83 IDQ 85
ID+
Sbjct: 132 IDR 134
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82
L IDTPGH F+ R A A+L+VD +G + QT + + NK
Sbjct: 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANK 131
Query: 83 IDQ 85
ID+
Sbjct: 132 IDR 134
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 65 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 124
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 79 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 79 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 80 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 80 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 79 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 138
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 71 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 130
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--SELTIIPVI 80
++ +D+PGH + + GA+LV+ A + +A E II V
Sbjct: 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQ 142
Query: 81 NKID-----QPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRG 135
NKID Q + +++K +K + + + SA ++ +L A+ + IP P+
Sbjct: 143 NKIDLVDEKQAEENYEQIKEFVKGTI-AENAPIIPISAHHEANIDVLLKAIQDFIPTPKR 201
Query: 136 IINSSLRMLLLDSY--------YDEYKGVICHVAVVDGTLRKGDKI 173
+++ RM + S+ + KG + A++ G + GD+I
Sbjct: 202 DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEI 247
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 37 EVSRSLAACQGALLVVDA-AQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKA 95
+V R+L + L VD A+ QA YL + + I+ V K+D P + +
Sbjct: 72 KVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVIL-VATKVDDP-----KHEL 125
Query: 96 QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131
L ++ L + + TS++ +GLE +L A+ ER+P
Sbjct: 126 YLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERLP 161
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--SELTIIPVI 80
++ ID PGH + + GA+LV+ A + +A + + II
Sbjct: 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQ 144
Query: 81 NKIDQPTADPDRVKA-----QLKSMFDLDPSE---ALLTSAKTGQGLEHVLPAVIERIPP 132
NKI+ D+ KA Q+K + +E + SA G ++ ++ A+ + IP
Sbjct: 145 NKIELV----DKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200
Query: 133 PRGIINSSLRMLLLDSY--------YDEYKGVICHVAVVDGTLRKGDKI 173
P+ N +ML+L S+ ++ G + ++V G L+ GD+I
Sbjct: 201 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEI 249
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 364 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--SELTIIPVI 80
++ ID PGH + + GA+LV+ A + +A + + II
Sbjct: 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQ 144
Query: 81 NKIDQPTADPDRVKA-----QLKSMFDLDPSE---ALLTSAKTGQGLEHVLPAVIERIPP 132
NKI+ D+ KA Q+K + +E + SA G ++ ++ A+ + IP
Sbjct: 145 NKIELV----DKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200
Query: 133 PRGIINSSLRMLLLDSY--------YDEYKGVICHVAVVDGTLRKGDKI 173
P+ N +ML+L S+ ++ G + ++V G L+ GD+I
Sbjct: 201 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEI 249
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
+D PGH D+ + A GA+LVV A G QT + L + + II +NK D
Sbjct: 364 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 23 LNLIDTPGHVDFSY-------EVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT 75
+ L+DTPG D + R +LV D+A V N + E E+
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFK--EMEIP 142
Query: 76 IIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131
+ V+NKID + +K +S ++ ++ LL SA +G + + + E +P
Sbjct: 143 FVVVVNKIDVLGEKAEELKGLYESRYE---AKVLLVSALQKKGFDDIGKTISEILP 195
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 42/241 (17%)
Query: 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESE 73
+ + +ID PGH DF + + A+L++ G QT + LAF
Sbjct: 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG 144
Query: 74 L-TIIPVINKIDQPTADPDRVKAQLK---------------------SMFDLDPSEALLT 111
+ +I +NK+D D R + +K S ++ D T
Sbjct: 145 VRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204
Query: 112 SAKTGQGLE----------HVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVA 161
+A +G E L I+ I P + LR+ L D Y G +
Sbjct: 205 NAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGR 264
Query: 162 VVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIG 221
V G ++ G ++ A G E+ V + H +L + VG+ V + S KE R G
Sbjct: 265 VETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQG--VPGDNVGFNVKNV-SVKEIRRG 321
Query: 222 D 222
+
Sbjct: 322 N 322
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 12 TSEAHNPSSFLLNLIDTPG--------HVDFSYEVSRSLAACQGA---LLVVDAAQGV-- 58
TS +N F++ +DT G Y V R+L A + +V+D +G+
Sbjct: 236 TSFTYNQQEFVI--VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE 293
Query: 59 QAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFD----LDPSEALLTSAK 114
Q + +A + A E+ ++ V+NK D D +K +++ D LD + L SA
Sbjct: 294 QDKRIAGY--AHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 351
Query: 115 TGQGLEHVLPAVIE 128
T + + ++PA+I+
Sbjct: 352 TKKRIHTLMPAIIK 365
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 68 LAFESELTIIPVINKIDQPTADPDRVKAQLKSMFD-LDPSEALLTSAKTGQGLEHV---L 123
LA ++EL + VINK+D D R +L+ ++ L P + TSAKTG G+E + L
Sbjct: 110 LAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP--IVKTSAKTGMGIEELKEYL 167
Query: 124 PAVIERIPPPRGIINSSL 141
I + G+ SSL
Sbjct: 168 KGKISTMAGLSGVGKSSL 185
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 27 DTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
D PGH D+ + A G +LVV A G QT + LA + + ++ +NK D
Sbjct: 72 DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKAD 130
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE-----SELTI 76
LL+++DT GH ++S + + +G L V + + ++ + ++ +
Sbjct: 70 LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 129
Query: 77 IPVINKIDQPTADPDRVKAQLKSMFDLDPSEA---LLTSAKTGQGLEHVLPAVIERI 130
+ V NK D P+ D +AQ DL S + TSAKT QG++ ++ I
Sbjct: 130 VLVGNKCDLPSRTVDTKQAQ-----DLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 8 NGPGTSEAHNPSSFL-----LNLIDTPGHVDFSY-----EVSRSLAACQGALLVVDAAQG 57
N PG + F +NLID PG Y +++R A LV+ A
Sbjct: 34 NWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADS 93
Query: 58 VQAQTVANFYLA-FESELTIIPVINKIDQPTADPDRV-KAQLKSMFDLDPSEALLTSAKT 115
V + L E E +I + ID+ ++ + +L+ + + TS+ T
Sbjct: 94 VNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP---VVFTSSVT 150
Query: 116 GQGLEHVLPAVIERIPPPRGIINSSLRMLLLD 147
G+GLE + ++E N+ L ++LD
Sbjct: 151 GEGLEELKEKIVEYAQK-----NTILHRMILD 177
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 27 DTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKID 84
D PGH D+ A G +LVV A G QT + LA + + ++ +NK D
Sbjct: 83 DCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHVVVYVNKAD 141
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY------LAFESELT 75
LL+++DT G ++S + + +G L V A ++ N Y + ++
Sbjct: 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVF-AINNSKSFADINLYREQIKRVKDSDDVP 128
Query: 76 IIPVINKIDQPTADPDRVKA-QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134
++ V NK D PT D +A +L + + E TSAKT QG+E ++ I R
Sbjct: 129 MVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIE---TSAKTRQGVEDAFYTLVREIRQYR 185
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 12 TSEAHNPSSFLLNLIDTPG--------HVDFSYEVSRSLAACQGA---LLVVDAAQGV-- 58
TS +N F++ +DT G Y V R+L A + +V+D +G+
Sbjct: 216 TSFTYNQQEFVI--VDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE 273
Query: 59 QAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFD----LDPSEALLTSAK 114
Q + +A + A E+ ++ V+NK D D K +++ D LD + L SA
Sbjct: 274 QDKRIAGY--AHEAGKAVVIVVNKWDAVDKDESTXKEFEENIRDHFQFLDYAPILFXSAL 331
Query: 115 TGQGLEHVLPAVIE 128
T + + + PA+I+
Sbjct: 332 TKKRIHTLXPAIIK 345
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 8 NGPGTSEAHNPSSFL-----LNLIDTPGHVDFSY-----EVSRSLAACQGALLVVDAAQG 57
N PG + F +NLID PG Y +++R A LV+ A
Sbjct: 34 NWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADS 93
Query: 58 VQAQTVANFYLA-FESELTIIPVINKIDQPTADPDRV-KAQLKSMFDLDPSEALLTSAKT 115
V + L E E +I + ID+ ++ + +L+ + + TS+ T
Sbjct: 94 VNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGI---PVVFTSSVT 150
Query: 116 GQGLEHVLPAVIE 128
G+GLE + ++E
Sbjct: 151 GEGLEELKEKIVE 163
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 359 IIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYA 418
+ P EY+G VI + RRGQ L + + + +PL E+ + +L+S T G
Sbjct: 5 VTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM-FGYATDLRSKTQGRG 62
Query: 419 SF 420
SF
Sbjct: 63 SF 64
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--SELTIIPVI 80
++ ID PGH + GA+LV+ A + A + + II
Sbjct: 85 VSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXALQIIGQKNIIIAQ 144
Query: 81 NKIDQPTADPDRVKA-----QLKSMFDLDPSE---ALLTSAKTGQGLEHVLPAVIERIPP 132
NKI+ D+ KA Q+K + +E + SA G ++ ++ A+ + IP
Sbjct: 145 NKIEL----VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200
Query: 133 PRGIINSSLRMLLLDSY--------YDEYKGVICHVAVVDGTLRKGDKI 173
P+ N + L+L S+ ++ G + ++V G L+ GD+I
Sbjct: 201 PKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEI 249
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 27 DTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-------QAQTVANFYLAFESELT-IIP 78
D PGH DF + ++ A+LVVD++Q QT + YL ++ I+
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 79 VINKIDQPTADPDRVK 94
+NK+D + DR +
Sbjct: 321 SVNKLDLMSWSEDRFQ 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,448,674
Number of Sequences: 62578
Number of extensions: 621816
Number of successful extensions: 1743
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 144
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)