Query 008991
Match_columns 547
No_of_seqs 490 out of 3367
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0481 LepA Membrane GTPase L 100.0 8E-177 2E-181 1340.9 45.4 528 17-546 72-600 (603)
2 KOG0462 Elongation factor-type 100.0 1E-150 2E-155 1166.1 37.1 527 18-546 122-650 (650)
3 TIGR01393 lepA GTP-binding pro 100.0 9E-147 2E-151 1212.2 56.0 528 17-546 66-594 (595)
4 PRK05433 GTP-binding protein L 100.0 2E-146 4E-151 1210.4 54.9 527 17-546 70-597 (600)
5 TIGR01394 TypA_BipA GTP-bindin 100.0 5.9E-76 1.3E-80 647.5 43.0 431 17-491 60-521 (594)
6 PRK10218 GTP-binding protein; 100.0 8E-75 1.7E-79 637.7 44.2 440 9-491 51-526 (607)
7 COG0480 FusA Translation elong 100.0 5.2E-71 1.1E-75 610.5 41.8 409 13-431 69-680 (697)
8 KOG0465 Mitochondrial elongati 100.0 3.1E-72 6.7E-77 587.1 28.9 403 18-431 101-710 (721)
9 PRK00007 elongation factor G; 100.0 6.7E-68 1.4E-72 597.5 42.1 402 19-430 73-679 (693)
10 PRK12739 elongation factor G; 100.0 1.8E-67 3.9E-72 594.3 42.6 402 19-430 71-676 (691)
11 PRK13351 elongation factor G; 100.0 5.5E-67 1.2E-71 591.6 44.6 405 17-430 69-676 (687)
12 TIGR00484 EF-G translation elo 100.0 9.1E-67 2E-71 588.9 42.2 403 18-430 72-676 (689)
13 COG1217 TypA Predicted membran 100.0 2.9E-67 6.2E-72 535.4 33.7 442 17-505 64-536 (603)
14 PRK12740 elongation factor G; 100.0 1.1E-65 2.3E-70 580.1 42.5 403 18-430 57-658 (668)
15 PRK07560 elongation factor EF- 100.0 2.5E-65 5.5E-70 579.6 35.9 405 17-431 83-702 (731)
16 TIGR00490 aEF-2 translation el 100.0 4.7E-63 1E-67 559.8 37.9 407 16-431 81-700 (720)
17 PLN00116 translation elongatio 100.0 2.2E-60 4.7E-65 545.2 39.2 421 19-467 96-823 (843)
18 PTZ00416 elongation factor 2; 100.0 6.6E-59 1.4E-63 532.0 37.6 421 19-467 90-816 (836)
19 PF06421 LepA_C: GTP-binding p 100.0 9.3E-58 2E-62 382.5 5.7 108 439-546 1-108 (108)
20 KOG0464 Elongation factor G [T 100.0 2.7E-56 5.9E-61 447.8 13.0 410 14-431 95-738 (753)
21 PRK00741 prfC peptide chain re 100.0 4.2E-48 9.2E-53 421.6 33.5 300 17-326 75-472 (526)
22 TIGR00503 prfC peptide chain r 100.0 4.7E-47 1E-51 413.5 31.7 297 16-322 75-469 (527)
23 KOG0469 Elongation factor 2 [T 100.0 4.5E-44 9.7E-49 366.6 21.9 418 16-451 93-816 (842)
24 COG4108 PrfC Peptide chain rel 100.0 1.2E-40 2.6E-45 339.1 21.3 294 17-321 77-469 (528)
25 KOG0468 U5 snRNP-specific prot 100.0 1.6E-36 3.5E-41 319.6 27.6 435 15-466 191-935 (971)
26 KOG0467 Translation elongation 100.0 2.3E-34 4.9E-39 308.6 20.3 435 18-465 69-860 (887)
27 PRK05306 infB translation init 100.0 6.4E-28 1.4E-32 271.8 28.4 374 19-427 335-767 (787)
28 TIGR00487 IF-2 translation ini 100.0 1.7E-27 3.6E-32 262.7 27.2 378 22-432 136-573 (587)
29 COG5256 TEF1 Translation elong 100.0 9.6E-28 2.1E-32 245.5 22.7 216 10-230 69-318 (428)
30 PRK12736 elongation factor Tu; 100.0 6.4E-28 1.4E-32 256.3 22.2 216 9-228 58-297 (394)
31 PTZ00141 elongation factor 1- 100.0 1.6E-27 3.4E-32 256.3 22.8 206 17-228 81-318 (446)
32 PLN00043 elongation factor 1-a 100.0 1.4E-27 3.1E-32 256.5 21.2 206 17-228 81-318 (447)
33 CHL00071 tufA elongation facto 100.0 3.7E-27 8.1E-32 251.6 22.1 215 10-228 59-307 (409)
34 TIGR00485 EF-Tu translation el 100.0 4.2E-27 9.2E-32 250.2 21.9 215 10-228 59-297 (394)
35 PRK12317 elongation factor 1-a 100.0 6.9E-27 1.5E-31 251.1 22.3 215 9-228 67-310 (425)
36 PRK12735 elongation factor Tu; 99.9 1.9E-26 4.2E-31 245.1 22.8 216 9-228 58-299 (396)
37 TIGR00483 EF-1_alpha translati 99.9 3E-26 6.6E-31 246.1 23.0 214 10-228 69-312 (426)
38 PRK00049 elongation factor Tu; 99.9 2.5E-26 5.3E-31 244.2 21.4 216 9-228 58-299 (396)
39 PTZ00327 eukaryotic translatio 99.9 2E-26 4.4E-31 247.1 20.9 205 21-228 117-351 (460)
40 PRK10512 selenocysteinyl-tRNA- 99.9 3.4E-26 7.3E-31 254.1 23.0 215 10-228 34-260 (614)
41 PLN03126 Elongation factor Tu; 99.9 3.3E-26 7.1E-31 247.0 21.3 215 10-228 128-376 (478)
42 TIGR02034 CysN sulfate adenyly 99.9 7.9E-26 1.7E-30 241.1 23.0 204 18-229 77-301 (406)
43 PLN03127 Elongation factor Tu; 99.9 8.3E-26 1.8E-30 242.7 22.2 215 10-228 108-350 (447)
44 PRK04000 translation initiatio 99.9 3.5E-25 7.6E-30 236.2 21.3 206 20-228 84-318 (411)
45 TIGR03680 eif2g_arch translati 99.9 3.7E-25 8E-30 236.0 21.5 205 20-228 79-313 (406)
46 PRK05124 cysN sulfate adenylyl 99.9 4.5E-25 9.8E-30 239.0 22.1 207 17-228 103-328 (474)
47 CHL00189 infB translation init 99.9 1E-24 2.3E-29 243.8 20.9 385 18-435 292-732 (742)
48 TIGR00475 selB selenocysteine- 99.9 1.8E-24 3.8E-29 239.7 22.4 215 9-227 33-260 (581)
49 COG3276 SelB Selenocysteine-sp 99.9 1.2E-24 2.6E-29 224.3 19.0 216 10-228 34-256 (447)
50 KOG0460 Mitochondrial translat 99.9 3E-25 6.5E-30 220.2 11.8 207 19-229 115-342 (449)
51 COG0050 TufB GTPases - transla 99.9 1.9E-24 4.2E-29 210.9 15.7 208 17-228 71-297 (394)
52 COG2895 CysN GTPases - Sulfate 99.9 2.2E-23 4.8E-28 208.3 19.0 229 17-255 82-331 (431)
53 PRK05506 bifunctional sulfate 99.9 4.3E-23 9.3E-28 231.8 22.6 205 18-228 101-324 (632)
54 COG0532 InfB Translation initi 99.9 2E-22 4.3E-27 212.9 22.8 291 20-322 54-391 (509)
55 KOG1145 Mitochondrial translat 99.9 9.7E-23 2.1E-27 213.1 16.7 201 19-227 199-407 (683)
56 KOG0458 Elongation factor 1 al 99.9 3.2E-21 7E-26 204.0 19.9 205 17-226 251-488 (603)
57 cd03709 lepA_C lepA_C: This fa 99.9 2.3E-21 5E-26 159.5 9.2 80 352-431 1-80 (80)
58 PRK04004 translation initiatio 99.8 2.4E-20 5.3E-25 206.4 19.1 168 23-190 73-284 (586)
59 cd03710 BipA_TypA_C BipA_TypA_ 99.8 7.1E-21 1.5E-25 156.3 9.2 78 352-430 1-78 (79)
60 PRK14845 translation initiatio 99.8 7.5E-20 1.6E-24 210.7 19.8 202 23-227 528-783 (1049)
61 TIGR00491 aIF-2 translation in 99.8 2.1E-19 4.6E-24 198.3 20.2 165 23-188 71-280 (590)
62 COG5258 GTPBP1 GTPase [General 99.8 6.5E-19 1.4E-23 177.7 19.1 207 16-227 196-436 (527)
63 smart00838 EFG_C Elongation fa 99.8 3.6E-20 7.8E-25 154.3 8.1 79 350-430 1-79 (85)
64 PF00679 EFG_C: Elongation fac 99.8 3.6E-20 7.9E-25 155.6 6.7 84 349-433 1-84 (89)
65 PF00009 GTP_EFTU: Elongation 99.8 1.2E-19 2.5E-24 173.7 10.4 115 18-132 67-188 (188)
66 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 1.1E-19 2.3E-24 149.0 8.6 77 352-430 1-77 (78)
67 COG5257 GCD11 Translation init 99.8 7.6E-19 1.6E-23 173.9 15.7 203 21-225 86-311 (415)
68 cd03711 Tet_C Tet_C: C-terminu 99.8 1.8E-19 4E-24 147.5 9.0 77 352-430 1-77 (78)
69 cd04096 eEF2_snRNP_like_C eEF2 99.8 1.2E-19 2.7E-24 149.3 8.0 78 352-430 1-79 (80)
70 KOG0461 Selenocysteine-specifi 99.8 6.7E-19 1.5E-23 175.3 12.4 190 17-209 66-268 (522)
71 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 3.5E-19 7.5E-24 145.9 7.9 77 352-430 1-77 (78)
72 KOG0459 Polypeptide release fa 99.8 1.6E-18 3.4E-23 176.1 13.7 205 19-230 155-392 (501)
73 cd04098 eEF2_C_snRNP eEF2_C_sn 99.8 5.2E-19 1.1E-23 145.5 8.0 78 352-430 1-79 (80)
74 cd01890 LepA LepA subfamily. 99.8 3.2E-18 6.9E-23 161.3 14.5 117 17-133 63-179 (179)
75 cd01514 Elongation_Factor_C El 99.8 9.9E-19 2.1E-23 143.6 8.5 78 352-430 1-78 (79)
76 cd04168 TetM_like Tet(M)-like 99.7 2.5E-17 5.3E-22 163.4 13.8 117 17-133 60-237 (237)
77 cd01886 EF-G Elongation factor 99.7 6.3E-17 1.4E-21 163.4 13.8 85 18-102 61-145 (270)
78 cd01884 EF_Tu EF-Tu subfamily. 99.7 2.8E-16 6E-21 151.3 13.4 124 10-133 49-195 (195)
79 cd04169 RF3 RF3 subfamily. Pe 99.7 3.1E-16 6.7E-21 158.2 14.3 118 16-133 66-267 (267)
80 cd01891 TypA_BipA TypA (tyrosi 99.7 1.5E-15 3.3E-20 145.8 14.2 118 16-133 60-194 (194)
81 cd01888 eIF2_gamma eIF2-gamma 99.6 7.4E-16 1.6E-20 149.3 11.5 114 21-134 83-202 (203)
82 cd01889 SelB_euk SelB subfamil 99.6 1.2E-15 2.5E-20 146.3 12.6 116 19-134 66-189 (192)
83 cd01885 EF2 EF2 (for archaea a 99.6 1.5E-15 3.2E-20 149.0 11.9 116 18-133 70-222 (222)
84 PF14492 EFG_II: Elongation Fa 99.6 3.8E-16 8.3E-21 126.7 5.5 75 239-316 1-75 (75)
85 KOG0463 GTP-binding protein GP 99.6 2.3E-15 5E-20 151.6 11.6 207 20-228 218-456 (641)
86 cd04166 CysN_ATPS CysN_ATPS su 99.6 7.4E-15 1.6E-19 142.9 13.5 112 10-121 61-184 (208)
87 cd04170 EF-G_bact Elongation f 99.6 7.2E-15 1.6E-19 148.5 13.3 85 18-102 61-145 (268)
88 cd04165 GTPBP1_like GTPBP1-lik 99.6 5.9E-15 1.3E-19 145.2 12.0 114 19-133 82-224 (224)
89 cd03699 lepA_II lepA_II: This 99.6 6.7E-15 1.5E-19 122.8 10.4 86 141-226 1-86 (86)
90 cd01883 EF1_alpha Eukaryotic e 99.6 6.5E-15 1.4E-19 144.4 11.3 112 10-121 61-195 (219)
91 cd04171 SelB SelB subfamily. 99.6 1E-14 2.2E-19 134.7 11.7 109 20-128 50-163 (164)
92 KOG1144 Translation initiation 99.6 3.9E-15 8.5E-20 160.3 10.1 159 23-181 542-740 (1064)
93 cd00881 GTP_translation_factor 99.6 2.9E-14 6.3E-19 134.8 13.8 115 19-133 60-189 (189)
94 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 4.2E-14 9.1E-19 131.4 13.3 112 19-130 48-165 (168)
95 cd01894 EngA1 EngA1 subfamily. 99.5 5.9E-14 1.3E-18 128.4 11.7 119 7-130 26-157 (157)
96 cd04092 mtEFG2_II_like mtEFG2_ 99.5 4.5E-14 9.7E-19 117.0 9.5 82 141-226 1-83 (83)
97 cd04088 EFG_mtEFG_II EFG_mtEFG 99.5 7.8E-14 1.7E-18 115.5 9.7 82 141-226 1-83 (83)
98 KOG1143 Predicted translation 99.5 2.4E-13 5.2E-18 137.1 14.0 209 19-228 247-491 (591)
99 TIGR00436 era GTP-binding prot 99.5 1.6E-13 3.4E-18 139.0 12.9 123 7-132 29-165 (270)
100 COG1160 Predicted GTPases [Gen 99.5 9.1E-14 2E-18 145.4 10.6 120 7-131 32-165 (444)
101 KOG0466 Translation initiation 99.5 7.3E-14 1.6E-18 137.6 9.1 187 22-208 126-336 (466)
102 cd04167 Snu114p Snu114p subfam 99.5 2.8E-13 6E-18 132.2 13.0 116 18-133 68-213 (213)
103 cd04091 mtEFG1_II_like mtEFG1_ 99.5 1.6E-13 3.4E-18 113.2 9.4 80 141-226 1-81 (81)
104 PTZ00099 rab6; Provisional 99.5 1.4E-13 3.1E-18 130.4 9.8 116 15-134 23-145 (176)
105 KOG0084 GTPase Rab1/YPT1, smal 99.5 1.5E-13 3.2E-18 128.4 9.4 116 13-130 50-171 (205)
106 cd04120 Rab12 Rab12 subfamily. 99.5 2E-13 4.3E-18 132.3 10.6 114 15-130 43-162 (202)
107 cd04157 Arl6 Arl6 subfamily. 99.5 2.9E-13 6.3E-18 124.9 11.1 118 8-128 31-161 (162)
108 cd03690 Tet_II Tet_II: This su 99.5 2.6E-13 5.6E-18 113.0 9.5 84 138-226 1-85 (85)
109 COG1159 Era GTPase [General fu 99.5 2.9E-13 6.3E-18 134.7 11.3 124 7-132 35-173 (298)
110 cd01864 Rab19 Rab19 subfamily. 99.5 2.5E-13 5.3E-18 126.4 10.3 111 17-129 48-164 (165)
111 PRK15494 era GTPase Era; Provi 99.5 3.8E-13 8.1E-18 140.4 12.3 124 7-132 81-217 (339)
112 cd04145 M_R_Ras_like M-Ras/R-R 99.5 5.6E-13 1.2E-17 123.3 12.0 112 16-130 45-163 (164)
113 smart00176 RAN Ran (Ras-relate 99.4 4.3E-13 9.3E-18 129.7 10.5 113 16-131 39-154 (200)
114 cd03691 BipA_TypA_II BipA_TypA 99.4 6.5E-13 1.4E-17 110.8 9.8 82 141-226 1-86 (86)
115 TIGR03594 GTPase_EngA ribosome 99.4 4.5E-13 9.6E-18 144.4 10.9 124 7-130 201-343 (429)
116 PLN00223 ADP-ribosylation fact 99.4 9.2E-13 2E-17 125.3 11.7 111 17-130 57-177 (181)
117 cd04124 RabL2 RabL2 subfamily. 99.4 7E-13 1.5E-17 123.2 10.4 112 16-131 44-158 (161)
118 TIGR03594 GTPase_EngA ribosome 99.4 1E-12 2.2E-17 141.6 12.9 122 7-133 28-162 (429)
119 KOG0092 GTPase Rab5/YPT51 and 99.4 4.4E-13 9.6E-18 124.7 8.3 119 14-135 47-171 (200)
120 cd04175 Rap1 Rap1 subgroup. T 99.4 1.3E-12 2.9E-17 121.2 11.5 113 15-130 43-162 (164)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.4 1E-12 2.2E-17 122.2 10.6 110 19-128 48-166 (167)
122 cd04121 Rab40 Rab40 subfamily. 99.4 1.2E-12 2.6E-17 125.5 11.0 114 15-131 49-167 (189)
123 PTZ00369 Ras-like protein; Pro 99.4 1.2E-12 2.6E-17 125.1 11.0 115 15-132 47-168 (189)
124 PRK03003 GTP-binding protein D 99.4 1.7E-12 3.6E-17 141.6 13.5 121 7-132 67-200 (472)
125 cd00877 Ran Ran (Ras-related n 99.4 8E-13 1.7E-17 123.7 9.4 112 17-131 45-159 (166)
126 cd04136 Rap_like Rap-like subf 99.4 1.6E-12 3.5E-17 120.1 11.3 113 15-130 43-162 (163)
127 KOG0078 GTP-binding protein SE 99.4 1.1E-12 2.5E-17 124.1 10.3 119 11-132 51-175 (207)
128 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 1.4E-12 2.9E-17 123.0 10.9 114 15-131 44-164 (172)
129 cd01865 Rab3 Rab3 subfamily. 99.4 1.4E-12 3E-17 121.6 10.5 114 15-131 44-163 (165)
130 cd04133 Rop_like Rop subfamily 99.4 1.2E-12 2.6E-17 124.0 10.2 116 15-132 43-174 (176)
131 cd04122 Rab14 Rab14 subfamily. 99.4 1.7E-12 3.6E-17 121.0 10.9 113 15-130 45-163 (166)
132 smart00173 RAS Ras subfamily o 99.4 2.3E-12 4.9E-17 119.5 11.7 113 16-131 43-162 (164)
133 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 1.9E-12 4.2E-17 124.9 11.7 113 18-132 47-169 (201)
134 cd04151 Arl1 Arl1 subfamily. 99.4 1.6E-12 3.5E-17 120.1 10.7 112 17-128 39-157 (158)
135 cd04106 Rab23_lke Rab23-like s 99.4 2.1E-12 4.6E-17 119.3 11.2 109 18-129 48-161 (162)
136 cd03689 RF3_II RF3_II: this su 99.4 1.5E-12 3.3E-17 108.3 9.1 80 143-226 1-84 (85)
137 cd04127 Rab27A Rab27a subfamil 99.4 1.5E-12 3.3E-17 122.8 10.3 110 18-130 60-176 (180)
138 cd01875 RhoG RhoG subfamily. 99.4 1.9E-12 4.2E-17 124.1 11.2 117 16-134 46-180 (191)
139 cd04150 Arf1_5_like Arf1-Arf5- 99.4 2.4E-12 5.1E-17 119.6 11.4 109 17-128 40-158 (159)
140 cd04138 H_N_K_Ras_like H-Ras/N 99.4 1.6E-12 3.4E-17 119.6 10.0 112 16-130 44-161 (162)
141 cd04144 Ras2 Ras2 subfamily. 99.4 2.2E-12 4.7E-17 123.5 11.3 113 16-131 42-163 (190)
142 cd04154 Arl2 Arl2 subfamily. 99.4 1.8E-12 3.9E-17 121.9 10.3 107 19-128 56-172 (173)
143 cd04113 Rab4 Rab4 subfamily. 99.4 9.9E-13 2.2E-17 121.6 8.3 112 15-129 43-160 (161)
144 cd04149 Arf6 Arf6 subfamily. 99.4 2.7E-12 5.8E-17 120.5 11.2 109 17-128 49-167 (168)
145 cd04158 ARD1 ARD1 subfamily. 99.4 2.7E-12 5.9E-17 120.3 11.1 116 17-132 39-162 (169)
146 cd04176 Rap2 Rap2 subgroup. T 99.4 3.6E-12 7.8E-17 118.1 11.5 113 15-130 43-162 (163)
147 cd01879 FeoB Ferrous iron tran 99.4 2.5E-12 5.3E-17 118.1 9.9 119 7-130 24-156 (158)
148 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 2.7E-12 5.8E-17 122.1 10.4 113 18-131 49-170 (183)
149 KOG0098 GTPase Rab2, small G p 99.4 2.2E-12 4.7E-17 119.2 9.2 114 14-130 48-167 (216)
150 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 3.4E-12 7.4E-17 118.7 10.8 111 17-130 47-163 (166)
151 cd01867 Rab8_Rab10_Rab13_like 99.4 1.8E-12 3.8E-17 121.1 8.8 112 16-130 47-164 (167)
152 cd04112 Rab26 Rab26 subfamily. 99.4 2.6E-12 5.7E-17 123.0 10.1 116 15-133 44-165 (191)
153 cd04147 Ras_dva Ras-dva subfam 99.4 2.8E-12 6.1E-17 123.6 10.3 118 15-132 41-164 (198)
154 cd01860 Rab5_related Rab5-rela 99.4 4.5E-12 9.9E-17 117.2 11.3 115 14-131 43-163 (163)
155 PRK00093 GTP-binding protein D 99.4 4.3E-12 9.3E-17 137.1 12.7 124 7-130 202-343 (435)
156 cd01871 Rac1_like Rac1-like su 99.4 3.6E-12 7.8E-17 120.4 10.6 115 13-129 41-173 (174)
157 cd04177 RSR1 RSR1 subgroup. R 99.4 3.3E-12 7.2E-17 119.3 10.2 114 15-130 43-163 (168)
158 PRK04213 GTP-binding protein; 99.4 5.1E-12 1.1E-16 121.7 11.7 125 7-133 37-194 (201)
159 PRK03003 GTP-binding protein D 99.3 3.6E-12 7.8E-17 138.9 11.7 126 6-131 239-382 (472)
160 cd01861 Rab6 Rab6 subfamily. 99.3 3.6E-12 7.7E-17 117.6 9.6 110 17-129 45-160 (161)
161 cd00878 Arf_Arl Arf (ADP-ribos 99.3 4.4E-12 9.5E-17 116.9 10.1 110 19-128 41-157 (158)
162 cd04119 RJL RJL (RabJ-Like) su 99.3 6.7E-12 1.4E-16 116.1 11.3 113 15-130 43-166 (168)
163 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 6.7E-12 1.5E-16 118.3 11.4 117 8-128 45-173 (174)
164 smart00175 RAB Rab subfamily o 99.3 5.5E-12 1.2E-16 116.5 10.6 114 15-131 43-162 (164)
165 cd04114 Rab30 Rab30 subfamily. 99.3 5.8E-12 1.3E-16 117.3 10.8 113 15-130 50-168 (169)
166 PRK00093 GTP-binding protein D 99.3 7.9E-12 1.7E-16 135.0 13.4 121 7-132 30-163 (435)
167 cd04156 ARLTS1 ARLTS1 subfamil 99.3 7.7E-12 1.7E-16 115.4 11.4 111 18-128 41-159 (160)
168 cd04143 Rhes_like Rhes_like su 99.3 5.4E-12 1.2E-16 126.0 11.2 119 15-134 42-174 (247)
169 cd04140 ARHI_like ARHI subfami 99.3 6.6E-12 1.4E-16 117.0 11.0 110 17-129 45-163 (165)
170 COG1160 Predicted GTPases [Gen 99.3 5.6E-12 1.2E-16 132.1 11.6 124 7-130 207-350 (444)
171 PRK00089 era GTPase Era; Revie 99.3 7.6E-12 1.7E-16 128.0 12.4 124 7-132 34-172 (292)
172 smart00177 ARF ARF-like small 99.3 6.4E-12 1.4E-16 118.7 11.0 110 18-130 54-173 (175)
173 cd04128 Spg1 Spg1p. Spg1p (se 99.3 3.5E-12 7.5E-17 121.5 9.2 114 14-131 42-166 (182)
174 cd01897 NOG NOG1 is a nucleola 99.3 7.4E-12 1.6E-16 116.5 11.1 120 8-130 29-167 (168)
175 cd01895 EngA2 EngA2 subfamily. 99.3 1.1E-11 2.4E-16 114.8 12.3 122 8-129 32-173 (174)
176 PLN03071 GTP-binding nuclear p 99.3 4.7E-12 1E-16 124.2 10.1 120 8-131 44-172 (219)
177 cd04116 Rab9 Rab9 subfamily. 99.3 9.5E-12 2.1E-16 116.2 11.6 112 16-129 49-169 (170)
178 cd04146 RERG_RasL11_like RERG/ 99.3 6.2E-12 1.3E-16 117.0 10.2 113 15-130 41-163 (165)
179 cd01893 Miro1 Miro1 subfamily. 99.3 9E-12 2E-16 116.2 11.3 115 15-130 41-163 (166)
180 PRK09518 bifunctional cytidyla 99.3 4.1E-12 8.8E-17 145.0 10.6 147 6-153 478-647 (712)
181 cd01874 Cdc42 Cdc42 subfamily. 99.3 4.5E-12 9.7E-17 119.8 9.1 113 15-129 43-173 (175)
182 PTZ00133 ADP-ribosylation fact 99.3 8.9E-12 1.9E-16 118.6 11.1 111 17-130 57-177 (182)
183 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 6.8E-12 1.5E-16 118.0 10.1 113 16-131 44-165 (170)
184 PF02421 FeoB_N: Ferrous iron 99.3 6.7E-13 1.4E-17 122.6 3.1 115 7-126 28-156 (156)
185 cd01868 Rab11_like Rab11-like. 99.3 5E-12 1.1E-16 117.4 9.0 111 17-130 48-164 (165)
186 cd04134 Rho3 Rho3 subfamily. 99.3 6E-12 1.3E-16 120.3 9.7 117 16-134 43-177 (189)
187 cd01866 Rab2 Rab2 subfamily. 99.3 5.3E-12 1.2E-16 118.0 9.2 111 16-130 48-165 (168)
188 cd01863 Rab18 Rab18 subfamily. 99.3 4.6E-12 9.9E-17 117.0 8.5 119 8-129 31-160 (161)
189 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 9.2E-12 2E-16 118.7 10.8 113 15-129 47-178 (182)
190 cd04110 Rab35 Rab35 subfamily. 99.3 9.8E-12 2.1E-16 119.9 11.0 113 16-131 50-167 (199)
191 PRK09518 bifunctional cytidyla 99.3 1.1E-11 2.4E-16 141.5 13.0 121 7-132 304-437 (712)
192 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 1.2E-11 2.6E-16 115.3 10.6 121 12-135 62-189 (221)
193 cd04139 RalA_RalB RalA/RalB su 99.3 1.5E-11 3.3E-16 113.4 11.4 112 16-130 43-161 (164)
194 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 1.1E-11 2.4E-16 115.8 10.4 113 16-128 39-163 (164)
195 cd01862 Rab7 Rab7 subfamily. 99.3 1.4E-11 2.9E-16 114.9 11.0 114 15-130 43-166 (172)
196 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.4E-11 3.1E-16 115.3 11.0 121 8-128 29-166 (167)
197 cd04101 RabL4 RabL4 (Rab-like4 99.3 1.2E-11 2.7E-16 114.5 10.4 110 18-130 49-163 (164)
198 TIGR03598 GTPase_YsxC ribosome 99.3 1.1E-11 2.4E-16 117.4 10.2 114 7-120 48-179 (179)
199 cd04132 Rho4_like Rho4-like su 99.3 1.1E-11 2.3E-16 117.9 10.2 112 18-131 46-167 (187)
200 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 1.9E-11 4.1E-16 120.8 11.6 114 15-130 55-187 (232)
201 cd01898 Obg Obg subfamily. Th 99.3 2.2E-11 4.7E-16 113.4 11.4 121 7-129 28-169 (170)
202 cd04142 RRP22 RRP22 subfamily. 99.3 1E-11 2.2E-16 119.9 9.5 114 16-132 44-175 (198)
203 smart00174 RHO Rho (Ras homolo 99.3 1.5E-11 3.2E-16 115.2 10.2 114 15-130 40-171 (174)
204 PLN03118 Rab family protein; P 99.3 1.3E-11 2.8E-16 120.1 10.1 114 16-132 57-178 (211)
205 PLN03110 Rab GTPase; Provision 99.3 1.8E-11 3.8E-16 119.8 10.8 114 16-132 56-175 (216)
206 cd04131 Rnd Rnd subfamily. Th 99.3 1.6E-11 3.5E-16 116.5 10.2 113 15-129 43-174 (178)
207 KOG0093 GTPase Rab3, small G p 99.3 1.6E-11 3.6E-16 109.1 9.4 113 17-132 66-184 (193)
208 PRK15467 ethanolamine utilizat 99.3 1.6E-11 3.4E-16 114.3 9.8 104 25-132 41-148 (158)
209 KOG0083 GTPase Rab26/Rab37, sm 99.3 6.6E-12 1.4E-16 109.8 6.6 141 15-158 41-187 (192)
210 cd04109 Rab28 Rab28 subfamily. 99.3 1.6E-11 3.6E-16 119.9 10.2 110 19-131 48-166 (215)
211 cd04126 Rab20 Rab20 subfamily. 99.3 2.6E-11 5.6E-16 119.0 11.6 114 18-131 41-190 (220)
212 cd00879 Sar1 Sar1 subfamily. 99.3 2.4E-11 5.2E-16 115.8 11.1 109 19-130 61-190 (190)
213 cd04123 Rab21 Rab21 subfamily. 99.3 2.6E-11 5.7E-16 111.4 10.9 111 17-130 45-161 (162)
214 cd04135 Tc10 TC10 subfamily. 99.3 1.2E-11 2.6E-16 115.8 8.7 114 15-130 42-173 (174)
215 cd04115 Rab33B_Rab33A Rab33B/R 99.3 2.6E-11 5.7E-16 113.6 10.9 113 15-130 45-168 (170)
216 smart00178 SAR Sar1p-like memb 99.3 2.4E-11 5.3E-16 115.7 10.8 108 18-129 58-183 (184)
217 cd04117 Rab15 Rab15 subfamily. 99.3 3.5E-11 7.5E-16 111.9 11.6 111 16-129 44-160 (161)
218 cd01873 RhoBTB RhoBTB subfamil 99.3 1.9E-11 4.1E-16 117.8 9.6 110 15-129 60-194 (195)
219 cd04125 RabA_like RabA-like su 99.3 3.4E-11 7.4E-16 114.7 10.9 112 17-131 45-162 (188)
220 cd00154 Rab Rab family. Rab G 99.2 4.5E-11 9.8E-16 108.8 11.0 108 17-127 45-158 (159)
221 PRK05291 trmE tRNA modificatio 99.2 1.5E-11 3.2E-16 133.1 8.9 115 6-131 243-370 (449)
222 cd04130 Wrch_1 Wrch-1 subfamil 99.2 2.1E-11 4.6E-16 114.5 8.7 111 15-127 42-170 (173)
223 cd04164 trmE TrmE (MnmE, ThdF, 99.2 3.5E-11 7.7E-16 109.8 9.9 114 7-130 30-156 (157)
224 COG2229 Predicted GTPase [Gene 99.2 5.3E-11 1.1E-15 110.4 10.9 114 19-133 66-181 (187)
225 cd04137 RheB Rheb (Ras Homolog 99.2 5.3E-11 1.2E-15 112.3 10.9 113 16-131 44-163 (180)
226 cd04118 Rab24 Rab24 subfamily. 99.2 2.7E-11 6E-16 115.7 8.7 113 15-130 44-165 (193)
227 KOG0080 GTPase Rab18, small G 99.2 1.6E-11 3.6E-16 110.7 6.3 114 15-131 54-174 (209)
228 PRK09554 feoB ferrous iron tra 99.2 4.1E-11 9E-16 136.7 11.1 120 7-131 31-168 (772)
229 PRK00454 engB GTP-binding prot 99.2 7.9E-11 1.7E-15 112.6 11.4 125 7-131 54-194 (196)
230 cd01870 RhoA_like RhoA-like su 99.2 4.9E-11 1.1E-15 111.8 9.7 114 15-130 43-174 (175)
231 KOG0079 GTP-binding protein H- 99.2 4.6E-11 1E-15 106.4 8.7 115 13-130 49-168 (198)
232 cd01881 Obg_like The Obg-like 99.2 8E-11 1.7E-15 110.0 10.9 122 7-129 24-175 (176)
233 cd00876 Ras Ras family. The R 99.2 6.5E-11 1.4E-15 108.6 9.9 112 16-130 42-160 (160)
234 cd00157 Rho Rho (Ras homology) 99.2 3.8E-11 8.2E-16 111.8 8.3 112 15-128 42-170 (171)
235 cd01892 Miro2 Miro2 subfamily. 99.2 5.8E-11 1.3E-15 111.5 9.5 115 15-131 48-166 (169)
236 PRK12299 obgE GTPase CgtA; Rev 99.2 8.2E-11 1.8E-15 122.4 11.4 125 7-132 186-329 (335)
237 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 1E-10 2.3E-15 114.9 11.5 113 15-129 43-174 (222)
238 KOG0087 GTPase Rab11/YPT3, sma 99.2 3.1E-11 6.7E-16 114.0 7.1 113 15-130 57-175 (222)
239 cd04111 Rab39 Rab39 subfamily. 99.2 8E-11 1.7E-15 114.8 10.4 112 17-131 48-166 (211)
240 TIGR00437 feoB ferrous iron tr 99.2 4.8E-11 1.1E-15 133.0 9.9 120 6-130 21-154 (591)
241 cd04103 Centaurin_gamma Centau 99.2 6.2E-11 1.3E-15 110.2 8.8 109 14-129 40-157 (158)
242 cd00880 Era_like Era (E. coli 99.2 2.2E-10 4.8E-15 103.6 12.0 110 20-129 44-162 (163)
243 PLN03108 Rab family protein; P 99.2 1.3E-10 2.8E-15 113.2 11.1 113 15-130 49-167 (210)
244 cd04159 Arl10_like Arl10-like 99.2 1.7E-10 3.6E-15 105.1 11.0 110 19-128 42-158 (159)
245 KOG0081 GTPase Rab27, small G 99.2 7.8E-11 1.7E-15 106.1 8.3 110 18-130 64-180 (219)
246 TIGR00450 mnmE_trmE_thdF tRNA 99.2 1.2E-10 2.5E-15 125.7 11.1 115 7-130 232-359 (442)
247 KOG0086 GTPase Rab4, small G p 99.2 8.4E-11 1.8E-15 105.2 8.2 113 15-128 52-168 (214)
248 KOG0095 GTPase Rab30, small G 99.2 1E-10 2.2E-15 104.2 8.5 118 12-131 47-169 (213)
249 cd04148 RGK RGK subfamily. Th 99.2 1.6E-10 3.5E-15 113.5 10.9 114 13-131 42-163 (221)
250 KOG0088 GTPase Rab21, small G 99.2 1.5E-11 3.3E-16 110.5 2.9 113 15-130 56-174 (218)
251 COG0486 ThdF Predicted GTPase 99.2 7.5E-11 1.6E-15 124.1 8.5 120 7-133 246-378 (454)
252 cd04163 Era Era subfamily. Er 99.1 4E-10 8.7E-15 103.3 12.2 110 19-130 49-168 (168)
253 TIGR02729 Obg_CgtA Obg family 99.1 2.6E-10 5.6E-15 118.5 11.8 121 7-130 185-328 (329)
254 cd04155 Arl3 Arl3 subfamily. 99.1 3.1E-10 6.8E-15 106.1 11.2 118 8-128 44-172 (173)
255 TIGR02528 EutP ethanolamine ut 99.1 1.2E-10 2.6E-15 105.5 7.8 99 24-127 38-141 (142)
256 cd00882 Ras_like_GTPase Ras-li 99.1 3.3E-10 7.2E-15 101.0 10.2 110 18-127 42-156 (157)
257 PRK12298 obgE GTPase CgtA; Rev 99.1 3.4E-10 7.3E-15 120.1 11.7 125 7-132 187-334 (390)
258 cd01878 HflX HflX subfamily. 99.1 4.7E-10 1E-14 108.3 11.0 104 21-130 89-204 (204)
259 PRK12297 obgE GTPase CgtA; Rev 99.1 5.1E-10 1.1E-14 119.6 11.2 121 7-132 186-328 (424)
260 KOG0394 Ras-related GTPase [Ge 99.1 1.9E-10 4.1E-15 106.4 6.8 115 16-132 53-179 (210)
261 PF00025 Arf: ADP-ribosylation 99.1 1.5E-10 3.2E-15 109.6 6.4 118 9-129 45-174 (175)
262 PRK12296 obgE GTPase CgtA; Rev 99.1 4.7E-10 1E-14 121.4 10.7 123 7-131 187-340 (500)
263 COG0218 Predicted GTPase [Gene 99.1 1E-09 2.2E-14 104.0 11.1 126 6-131 53-197 (200)
264 PF00071 Ras: Ras family; Int 99.1 7.4E-10 1.6E-14 102.3 9.6 113 15-130 42-160 (162)
265 TIGR03156 GTP_HflX GTP-binding 99.1 7.2E-10 1.6E-14 116.2 10.6 115 7-129 217-350 (351)
266 cd03700 eEF2_snRNP_like_II EF2 99.0 8.9E-10 1.9E-14 93.3 8.9 80 142-225 2-92 (93)
267 KOG0091 GTPase Rab39, small G 99.0 8.7E-10 1.9E-14 99.9 9.1 111 17-130 54-172 (213)
268 TIGR00231 small_GTP small GTP- 99.0 1.4E-09 3.1E-14 98.2 10.5 105 20-127 49-160 (161)
269 PTZ00132 GTP-binding nuclear p 99.0 1.7E-09 3.7E-14 105.5 11.1 112 17-131 54-168 (215)
270 cd04129 Rho2 Rho2 subfamily. 99.0 6.8E-10 1.5E-14 105.9 7.8 113 16-130 44-172 (187)
271 KOG0075 GTP-binding ADP-ribosy 99.0 2.8E-09 6.1E-14 95.1 10.7 114 15-131 59-182 (186)
272 PRK11058 GTPase HflX; Provisio 99.0 2E-09 4.3E-14 115.5 10.4 120 7-132 225-363 (426)
273 PRK09866 hypothetical protein; 99.0 2.5E-09 5.3E-14 116.8 11.1 110 20-129 229-351 (741)
274 cd03698 eRF3_II_like eRF3_II_l 98.9 4.6E-09 1E-13 86.9 9.0 81 140-226 1-83 (83)
275 cd03693 EF1_alpha_II EF1_alpha 98.9 6.7E-09 1.4E-13 87.6 10.0 86 138-228 2-89 (91)
276 cd01876 YihA_EngB The YihA (En 98.9 7E-09 1.5E-13 95.3 10.4 124 7-130 29-170 (170)
277 KOG0395 Ras-related GTPase [Ge 98.9 6.9E-09 1.5E-13 100.0 10.7 115 15-132 45-166 (196)
278 KOG0097 GTPase Rab14, small G 98.9 5.1E-09 1.1E-13 92.6 8.3 108 15-125 54-167 (215)
279 cd04090 eEF2_II_snRNP Loc2 eEF 98.9 9.3E-09 2E-13 87.2 9.4 79 141-223 1-90 (94)
280 KOG0073 GTP-binding ADP-ribosy 98.9 1.6E-08 3.5E-13 92.0 10.8 115 17-131 56-178 (185)
281 cd01882 BMS1 Bms1. Bms1 is an 98.9 2.5E-08 5.4E-13 98.3 13.1 98 18-118 80-183 (225)
282 KOG0070 GTP-binding ADP-ribosy 98.9 8.6E-09 1.9E-13 95.9 8.7 123 7-132 46-179 (181)
283 cd04105 SR_beta Signal recogni 98.9 1E-08 2.2E-13 99.5 9.5 73 18-90 45-126 (203)
284 COG0370 FeoB Fe2+ transport sy 98.8 1.2E-08 2.6E-13 111.9 9.1 122 7-133 31-166 (653)
285 PF10662 PduV-EutP: Ethanolami 98.8 1.3E-08 2.9E-13 92.3 7.0 98 24-127 39-142 (143)
286 KOG0071 GTP-binding ADP-ribosy 98.8 3.3E-08 7.1E-13 87.7 8.8 112 18-132 58-179 (180)
287 cd01859 MJ1464 MJ1464. This f 98.7 2.7E-08 5.9E-13 92.0 8.3 95 35-132 3-97 (156)
288 cd04102 RabL3 RabL3 (Rab-like3 98.7 5.3E-08 1.2E-12 94.3 10.5 96 18-116 51-175 (202)
289 cd04089 eRF3_II eRF3_II: domai 98.7 5.4E-08 1.2E-12 80.4 9.0 80 140-226 1-82 (82)
290 KOG1423 Ras-like GTPase ERA [C 98.7 7E-08 1.5E-12 96.3 10.3 126 7-132 101-272 (379)
291 cd03695 CysN_NodQ_II CysN_NodQ 98.7 8E-08 1.7E-12 79.2 9.0 80 141-225 1-80 (81)
292 KOG0076 GTP-binding ADP-ribosy 98.7 3.3E-08 7.1E-13 90.9 7.2 111 20-133 68-189 (197)
293 cd01342 Translation_Factor_II_ 98.7 1.2E-07 2.5E-12 76.5 9.1 80 141-225 1-82 (83)
294 KOG0072 GTP-binding ADP-ribosy 98.7 8.4E-08 1.8E-12 85.5 8.2 121 8-131 48-179 (182)
295 cd01896 DRG The developmentall 98.7 1.4E-07 3E-12 93.5 10.8 114 8-130 29-225 (233)
296 PRK13768 GTPase; Provisional 98.6 1E-07 2.2E-12 95.7 9.7 110 22-132 98-248 (253)
297 cd03696 selB_II selB_II: this 98.6 1.8E-07 3.9E-12 77.3 9.1 81 141-226 1-83 (83)
298 KOG0393 Ras-related small GTPa 98.6 1.1E-07 2.4E-12 90.6 7.4 117 13-133 44-181 (198)
299 COG1100 GTPase SAR1 and relate 98.6 2.9E-07 6.2E-12 89.6 10.2 122 9-131 42-185 (219)
300 cd01855 YqeH YqeH. YqeH is an 98.6 1.5E-07 3.2E-12 90.1 7.8 101 29-131 19-125 (190)
301 cd03697 EFTU_II EFTU_II: Elong 98.5 4.5E-07 9.8E-12 75.7 9.2 82 141-227 1-86 (87)
302 cd03694 GTPBP_II Domain II of 98.5 4.5E-07 9.8E-12 75.7 8.9 82 141-226 1-87 (87)
303 PF03144 GTP_EFTU_D2: Elongati 98.5 3E-07 6.5E-12 74.0 6.5 67 155-225 1-74 (74)
304 PLN00023 GTP-binding protein; 98.5 4.8E-07 1E-11 92.9 9.3 70 19-88 81-166 (334)
305 cd01856 YlqF YlqF. Proteins o 98.4 4.8E-07 1E-11 85.2 7.3 99 28-131 2-101 (171)
306 KOG1489 Predicted GTP-binding 98.4 1.3E-06 2.8E-11 87.8 10.6 105 22-129 245-365 (366)
307 cd01858 NGP_1 NGP-1. Autoanti 98.4 8.2E-07 1.8E-11 82.3 8.3 91 38-130 2-94 (157)
308 cd04104 p47_IIGP_like p47 (47- 98.4 1E-06 2.2E-11 84.9 7.8 111 22-134 53-187 (197)
309 TIGR03596 GTPase_YlqF ribosome 98.4 9.7E-07 2.1E-11 89.7 7.9 99 29-132 5-104 (276)
310 KOG4252 GTP-binding protein [S 98.3 1.4E-07 2.9E-12 87.0 1.2 111 17-130 65-180 (246)
311 KOG1191 Mitochondrial GTPase [ 98.3 1E-06 2.2E-11 93.2 6.9 123 7-130 297-449 (531)
312 cd01849 YlqF_related_GTPase Yl 98.3 2E-06 4.3E-11 79.6 7.8 83 46-130 1-84 (155)
313 TIGR00157 ribosome small subun 98.3 8.9E-07 1.9E-11 88.4 5.4 94 32-127 24-119 (245)
314 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.8E-06 8.3E-11 76.4 8.3 80 36-118 3-84 (141)
315 cd01899 Ygr210 Ygr210 subfamil 98.2 8.9E-06 1.9E-10 84.2 11.9 56 73-132 214-270 (318)
316 PRK09435 membrane ATPase/prote 98.2 2.8E-06 6E-11 88.2 7.3 104 19-131 147-260 (332)
317 PRK09563 rbgA GTPase YlqF; Rev 98.2 2.2E-06 4.8E-11 87.6 6.0 101 27-132 6-107 (287)
318 COG2262 HflX GTPases [General 98.2 6E-06 1.3E-10 86.1 9.0 114 12-132 230-357 (411)
319 COG1084 Predicted GTPase [Gene 98.2 1.4E-05 3.1E-10 81.0 11.4 124 5-131 198-336 (346)
320 PF09439 SRPRB: Signal recogni 98.1 4.7E-06 1E-10 79.0 6.9 72 19-90 47-129 (181)
321 PF01926 MMR_HSR1: 50S ribosom 98.1 7E-06 1.5E-10 71.8 7.1 75 7-82 28-116 (116)
322 KOG0074 GTP-binding ADP-ribosy 98.1 1E-05 2.2E-10 72.1 7.8 110 19-131 60-179 (185)
323 cd03692 mtIF2_IVc mtIF2_IVc: t 98.1 2.5E-05 5.4E-10 64.8 9.4 77 143-224 3-82 (84)
324 KOG0096 GTPase Ran/TC4/GSP1 (n 98.1 3.2E-06 6.8E-11 79.1 3.9 111 17-130 55-168 (216)
325 PRK12289 GTPase RsgA; Reviewed 98.0 1.1E-05 2.4E-10 84.6 7.5 87 39-128 84-172 (352)
326 KOG0090 Signal recognition par 98.0 2.4E-05 5.2E-10 74.7 8.3 107 22-129 83-237 (238)
327 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.2E-05 2.6E-10 82.2 6.7 108 42-167 76-185 (287)
328 PRK00098 GTPase RsgA; Reviewed 97.9 1.3E-05 2.9E-10 82.3 6.4 83 42-126 78-162 (298)
329 PF08477 Miro: Miro-like prote 97.9 1.3E-05 2.8E-10 70.0 5.2 68 17-84 46-119 (119)
330 PF03029 ATP_bind_1: Conserved 97.9 1.4E-05 3.1E-10 79.4 6.1 107 22-128 92-234 (238)
331 TIGR03597 GTPase_YqeH ribosome 97.9 2.7E-05 5.8E-10 82.2 8.0 97 31-129 50-151 (360)
332 PRK12288 GTPase RsgA; Reviewed 97.9 3.2E-05 7E-10 81.0 8.1 87 42-128 118-205 (347)
333 KOG1532 GTPase XAB1, interacts 97.9 6E-05 1.3E-09 74.6 8.8 112 19-130 114-263 (366)
334 KOG0052 Translation elongation 97.8 2.7E-05 5.8E-10 80.8 6.2 173 17-228 78-260 (391)
335 COG0536 Obg Predicted GTPase [ 97.8 8.2E-05 1.8E-09 76.0 9.6 121 8-132 196-334 (369)
336 cd01850 CDC_Septin CDC/Septin. 97.8 0.00018 3.9E-09 73.2 12.0 96 17-113 59-184 (276)
337 PRK09602 translation-associate 97.8 0.00015 3.3E-09 77.4 11.7 55 73-132 217-272 (396)
338 TIGR00750 lao LAO/AO transport 97.8 5.2E-05 1.1E-09 78.1 7.6 104 19-130 125-237 (300)
339 COG1163 DRG Predicted GTPase [ 97.8 6.6E-05 1.4E-09 76.1 7.7 106 17-130 106-288 (365)
340 TIGR02836 spore_IV_A stage IV 97.8 0.00013 2.8E-09 76.8 10.0 124 6-132 60-238 (492)
341 PF04670 Gtr1_RagA: Gtr1/RagA 97.8 0.00018 3.8E-09 71.1 10.4 113 18-131 45-176 (232)
342 TIGR00101 ureG urease accessor 97.7 5.8E-05 1.3E-09 73.0 6.5 99 21-130 92-195 (199)
343 cd01852 AIG1 AIG1 (avrRpt2-ind 97.7 0.00013 2.9E-09 70.0 8.9 122 9-132 32-185 (196)
344 KOG0077 Vesicle coat complex C 97.7 9E-05 1.9E-09 68.1 7.0 108 18-128 61-190 (193)
345 COG3596 Predicted GTPase [Gene 97.7 0.00015 3.3E-09 72.1 9.0 113 20-133 86-224 (296)
346 PRK01889 GTPase RsgA; Reviewed 97.7 0.0001 2.2E-09 77.7 8.2 82 42-126 110-192 (356)
347 COG4917 EutP Ethanolamine util 97.7 5.6E-05 1.2E-09 66.3 4.5 99 25-129 41-144 (148)
348 KOG3883 Ras family small GTPas 97.6 0.00035 7.7E-09 63.3 9.3 120 18-140 57-184 (198)
349 KOG1673 Ras GTPases [General f 97.6 0.00011 2.4E-09 66.7 5.7 119 12-130 60-185 (205)
350 TIGR00073 hypB hydrogenase acc 97.6 0.00016 3.4E-09 70.3 6.8 100 21-129 103-205 (207)
351 PRK13796 GTPase YqeH; Provisio 97.6 0.00023 5E-09 75.3 8.5 95 33-130 58-158 (365)
352 KOG2486 Predicted GTPase [Gene 97.5 0.00029 6.4E-09 70.0 7.2 123 7-129 167-314 (320)
353 smart00053 DYNc Dynamin, GTPas 97.4 0.00075 1.6E-08 67.1 9.8 70 20-89 124-208 (240)
354 KOG1490 GTP-binding protein CR 97.4 0.00041 8.8E-09 73.9 8.0 110 21-130 215-340 (620)
355 cd03688 eIF2_gamma_II eIF2_gam 97.3 0.0014 3E-08 56.7 8.8 73 137-209 2-91 (113)
356 cd03702 IF2_mtIF2_II This fami 97.3 0.0016 3.5E-08 55.2 8.4 78 142-226 2-79 (95)
357 cd03110 Fer4_NifH_child This p 97.1 0.0023 5E-08 60.4 9.2 68 19-88 91-158 (179)
358 cd00066 G-alpha G protein alph 97.0 0.0015 3.2E-08 67.9 7.1 78 9-86 148-241 (317)
359 smart00275 G_alpha G protein a 97.0 0.002 4.4E-08 67.5 7.9 79 8-86 170-264 (342)
360 cd03701 IF2_IF5B_II IF2_IF5B_I 97.0 0.0047 1E-07 52.4 8.5 78 142-226 2-79 (95)
361 PF03308 ArgK: ArgK protein; 96.9 0.00057 1.2E-08 67.9 3.2 100 19-129 120-228 (266)
362 COG1162 Predicted GTPases [Gen 96.9 0.002 4.3E-08 65.5 6.9 87 41-128 76-164 (301)
363 KOG4423 GTP-binding protein-li 96.9 0.00038 8.1E-09 65.2 1.4 109 20-130 74-193 (229)
364 PTZ00258 GTP-binding protein; 96.8 0.0061 1.3E-07 64.8 10.1 34 22-55 86-126 (390)
365 PF00350 Dynamin_N: Dynamin fa 96.8 0.0021 4.5E-08 59.6 5.9 63 21-83 101-168 (168)
366 cd04178 Nucleostemin_like Nucl 96.8 0.0044 9.6E-08 58.5 7.9 42 46-87 1-44 (172)
367 PF14578 GTP_EFTU_D4: Elongati 96.7 0.0058 1.3E-07 50.0 7.0 77 140-225 4-80 (81)
368 COG1703 ArgK Putative periplas 96.5 0.009 2E-07 60.4 7.9 102 17-130 140-253 (323)
369 cd03703 aeIF5B_II aeIF5B_II: T 96.1 0.03 6.5E-07 48.6 8.3 48 142-189 2-51 (110)
370 KOG1954 Endocytosis/signaling 96.1 0.012 2.6E-07 60.9 6.6 66 22-87 148-225 (532)
371 cd02036 MinD Bacterial cell di 96.1 0.033 7.3E-07 51.9 9.5 80 22-103 64-144 (179)
372 PRK05306 infB translation init 96.1 0.12 2.6E-06 59.9 15.2 180 26-225 594-777 (787)
373 TIGR00487 IF-2 translation ini 96.1 0.1 2.2E-06 58.7 14.3 181 26-226 392-576 (587)
374 PRK09601 GTP-binding protein Y 96.0 0.031 6.7E-07 58.8 9.3 34 22-55 67-107 (364)
375 CHL00189 infB translation init 96.0 0.16 3.4E-06 58.5 15.5 179 26-225 549-731 (742)
376 KOG1707 Predicted Ras related/ 95.9 0.019 4.1E-07 62.6 7.5 114 19-134 54-178 (625)
377 COG1161 Predicted GTPases [Gen 95.9 0.02 4.4E-07 59.5 7.4 98 24-126 13-112 (322)
378 PRK10463 hydrogenase nickel in 95.9 0.0096 2.1E-07 60.6 4.8 76 48-129 209-287 (290)
379 PF05049 IIGP: Interferon-indu 95.3 0.037 8.1E-07 58.4 6.7 111 22-134 87-221 (376)
380 COG0532 InfB Translation initi 95.2 0.46 1E-05 51.8 14.7 84 142-227 415-498 (509)
381 TIGR00064 ftsY signal recognit 95.2 0.1 2.2E-06 53.0 9.4 94 19-122 153-259 (272)
382 PRK10416 signal recognition pa 95.1 0.12 2.7E-06 53.6 9.8 95 19-122 195-301 (318)
383 cd01853 Toc34_like Toc34-like 95.0 0.18 4E-06 50.5 10.4 68 19-86 77-162 (249)
384 KOG3886 GTP-binding protein [S 94.9 0.074 1.6E-06 51.9 6.8 82 9-90 35-133 (295)
385 COG0378 HypB Ni2+-binding GTPa 94.6 0.034 7.4E-07 53.0 3.7 99 21-129 97-199 (202)
386 PF06858 NOG1: Nucleolar GTP-b 94.4 0.083 1.8E-06 40.3 4.7 45 40-84 8-58 (58)
387 KOG1424 Predicted GTP-binding 94.4 0.11 2.4E-06 56.1 7.4 80 33-115 163-244 (562)
388 KOG2484 GTPase [General functi 94.3 0.12 2.6E-06 54.2 7.3 75 25-102 126-203 (435)
389 cd02038 FleN-like FleN is a me 94.2 0.15 3.3E-06 46.1 7.1 75 21-98 45-121 (139)
390 cd03115 SRP The signal recogni 94.1 0.19 4.2E-06 46.9 7.7 81 19-103 81-167 (173)
391 PF09186 DUF1949: Domain of un 93.9 0.22 4.7E-06 37.3 6.2 56 359-417 1-56 (56)
392 PF00735 Septin: Septin; Inte 93.9 0.38 8.3E-06 49.1 9.9 70 17-87 59-156 (281)
393 PRK13760 putative RNA-associat 93.7 0.12 2.6E-06 50.7 5.7 65 355-421 164-228 (231)
394 COG5192 BMS1 GTP-binding prote 93.7 0.26 5.7E-06 53.6 8.5 71 14-87 106-177 (1077)
395 COG3640 CooC CO dehydrogenase 93.6 0.11 2.5E-06 50.9 5.3 65 19-86 132-198 (255)
396 KOG0410 Predicted GTP binding 93.5 0.16 3.5E-06 52.0 6.2 102 19-132 224-342 (410)
397 TIGR01007 eps_fam capsular exo 93.3 0.3 6.6E-06 46.9 7.8 68 19-87 126-194 (204)
398 KOG0448 Mitofusin 1 GTPase, in 93.2 0.31 6.7E-06 54.4 8.3 92 22-115 207-310 (749)
399 KOG2485 Conserved ATP/GTP bind 93.0 0.2 4.4E-06 51.1 6.1 132 21-158 22-158 (335)
400 KOG0082 G-protein alpha subuni 93.0 0.25 5.4E-06 51.7 6.9 79 8-86 181-275 (354)
401 TIGR00991 3a0901s02IAP34 GTP-b 93.0 0.89 1.9E-05 46.9 10.8 68 19-86 84-166 (313)
402 cd02037 MRP-like MRP (Multiple 92.7 0.43 9.3E-06 44.4 7.7 65 19-85 66-133 (169)
403 TIGR01969 minD_arch cell divis 92.7 0.59 1.3E-05 46.1 9.0 81 19-103 107-188 (251)
404 PRK14974 cell division protein 92.6 0.45 9.8E-06 49.8 8.4 94 20-123 222-322 (336)
405 cd01900 YchF YchF subfamily. 92.6 0.21 4.5E-06 50.8 5.6 35 22-56 63-104 (274)
406 PHA02518 ParA-like protein; Pr 92.5 0.57 1.2E-05 44.9 8.4 66 19-86 75-146 (211)
407 TIGR01425 SRP54_euk signal rec 92.2 0.39 8.4E-06 51.8 7.3 65 20-86 182-252 (429)
408 PRK13849 putative crown gall t 91.8 0.68 1.5E-05 45.8 8.1 65 19-85 82-152 (231)
409 COG1149 MinD superfamily P-loo 91.3 0.71 1.5E-05 46.4 7.6 65 21-87 164-228 (284)
410 cd03114 ArgK-like The function 91.1 0.42 9E-06 43.9 5.4 59 19-84 90-148 (148)
411 cd03111 CpaE_like This protein 91.0 0.7 1.5E-05 39.7 6.4 59 22-82 44-106 (106)
412 TIGR01968 minD_bact septum sit 90.8 0.67 1.4E-05 46.0 7.0 64 20-85 111-175 (261)
413 TIGR00257 IMPACT_YIGZ uncharac 90.7 1.2 2.7E-05 43.1 8.5 69 350-421 132-200 (204)
414 PF04548 AIG1: AIG1 family; I 90.6 0.91 2E-05 44.1 7.6 110 19-129 47-184 (212)
415 COG5019 CDC3 Septin family pro 90.5 2 4.4E-05 44.9 10.2 92 17-109 78-199 (373)
416 PRK14722 flhF flagellar biosyn 90.5 0.52 1.1E-05 50.0 6.1 69 19-87 214-295 (374)
417 TIGR03371 cellulose_yhjQ cellu 90.4 1 2.2E-05 44.4 7.9 80 21-103 115-198 (246)
418 PF00503 G-alpha: G-protein al 90.2 0.23 5E-06 53.1 3.3 77 9-85 222-315 (389)
419 KOG2655 Septin family protein 90.1 3.3 7.2E-05 43.5 11.5 72 17-89 75-174 (366)
420 CHL00175 minD septum-site dete 90.1 0.85 1.8E-05 46.2 7.2 82 20-103 126-210 (281)
421 TIGR00959 ffh signal recogniti 89.4 1.4 3.1E-05 47.6 8.5 93 19-121 181-280 (428)
422 PF00448 SRP54: SRP54-type pro 89.0 0.96 2.1E-05 43.6 6.3 95 19-122 82-182 (196)
423 cd03112 CobW_like The function 88.8 0.87 1.9E-05 42.2 5.6 63 20-85 86-158 (158)
424 KOG1547 Septin CDC10 and relat 88.5 3 6.5E-05 41.3 9.1 93 17-110 100-222 (336)
425 PRK10867 signal recognition pa 88.4 1.9 4.2E-05 46.6 8.7 93 19-121 182-281 (433)
426 PRK11568 hypothetical protein; 88.2 2.6 5.6E-05 40.9 8.6 69 350-421 132-200 (204)
427 TIGR03815 CpaE_hom_Actino heli 88.0 1.6 3.5E-05 45.2 7.7 79 19-103 203-281 (322)
428 KOG1486 GTP-binding protein DR 87.7 1 2.2E-05 44.8 5.4 39 19-57 107-152 (364)
429 TIGR00291 RNA_SBDS rRNA metabo 87.1 1.1 2.3E-05 44.3 5.2 63 355-419 164-226 (231)
430 PRK10818 cell division inhibit 86.3 1.9 4.1E-05 43.3 6.8 65 20-86 113-186 (270)
431 cd02032 Bchl_like This family 86.1 2.7 5.9E-05 42.1 7.9 65 20-85 115-184 (267)
432 KOG3887 Predicted small GTPase 86.0 2.1 4.6E-05 42.3 6.5 70 20-89 74-151 (347)
433 PRK00771 signal recognition pa 85.9 2 4.4E-05 46.6 7.1 63 21-86 176-245 (437)
434 TIGR03029 EpsG chain length de 85.6 2.5 5.3E-05 42.6 7.3 63 19-82 211-274 (274)
435 PF01656 CbiA: CobQ/CobB/MinD/ 85.5 0.93 2E-05 42.6 3.9 65 21-87 95-162 (195)
436 PRK13185 chlL protochlorophyll 85.1 2.5 5.5E-05 42.4 7.1 65 19-84 116-185 (270)
437 cd02117 NifH_like This family 84.5 2 4.4E-05 41.5 5.9 82 19-103 115-203 (212)
438 TIGR00491 aIF-2 translation in 84.2 3.5 7.5E-05 46.6 8.3 69 154-227 479-550 (590)
439 cd02042 ParA ParA and ParB of 84.0 2.7 5.9E-05 35.4 5.8 35 21-57 40-74 (104)
440 PRK13869 plasmid-partitioning 83.9 3.1 6.6E-05 44.8 7.4 82 19-102 250-343 (405)
441 PRK11670 antiporter inner memb 83.0 2.7 5.9E-05 44.6 6.5 67 19-85 214-281 (369)
442 TIGR00993 3a0901s04IAP86 chlor 82.3 8 0.00017 44.0 9.9 79 9-87 150-250 (763)
443 PRK04004 translation initiatio 82.0 4.6 0.0001 45.6 8.2 73 148-226 476-551 (586)
444 TIGR03453 partition_RepA plasm 81.9 4.5 9.7E-05 43.2 7.7 82 19-102 233-326 (387)
445 cd02035 ArsA ArsA ATPase funct 81.9 6.2 0.00013 38.4 8.1 67 21-87 114-184 (217)
446 KOG2423 Nucleolar GTPase [Gene 81.8 6.1 0.00013 41.8 8.2 92 36-129 205-298 (572)
447 TIGR03597 GTPase_YqeH ribosome 80.4 0.68 1.5E-05 49.0 0.8 95 7-102 188-296 (360)
448 PRK10037 cell division protein 80.2 5.7 0.00012 39.5 7.4 58 19-84 116-174 (250)
449 PRK00090 bioD dithiobiotin syn 79.6 2.1 4.5E-05 41.7 3.9 85 19-103 102-193 (222)
450 PHA02519 plasmid partition pro 79.4 6.8 0.00015 41.9 8.0 82 19-102 233-324 (387)
451 KOG0447 Dynamin-like GTP bindi 79.4 5.9 0.00013 43.5 7.3 77 22-99 413-508 (980)
452 KOG0099 G protein subunit Galp 79.3 3 6.4E-05 41.8 4.7 74 12-87 195-283 (379)
453 KOG1707 Predicted Ras related/ 78.2 5.9 0.00013 43.9 7.0 89 43-134 494-586 (625)
454 PRK13705 plasmid-partitioning 77.3 8.7 0.00019 41.1 8.1 82 19-102 233-324 (388)
455 TIGR01281 DPOR_bchL light-inde 77.1 4.8 0.0001 40.4 5.8 79 19-103 114-197 (268)
456 TIGR01005 eps_transp_fam exopo 76.6 5.3 0.00012 46.5 6.8 66 19-85 654-720 (754)
457 KOG1145 Mitochondrial translat 76.6 4.3 9.3E-05 44.7 5.4 104 120-225 559-665 (683)
458 PF10609 ParA: ParA/MinD ATPas 76.4 17 0.00037 29.9 7.6 60 23-83 3-63 (81)
459 CHL00072 chlL photochlorophyll 76.3 7 0.00015 40.0 6.8 64 20-84 115-183 (290)
460 COG0541 Ffh Signal recognition 75.7 7.9 0.00017 41.6 7.0 65 19-86 181-252 (451)
461 smart00010 small_GTPase Small 75.0 2.2 4.7E-05 36.6 2.3 71 40-120 42-115 (124)
462 COG4963 CpaE Flp pilus assembl 73.4 11 0.00023 39.9 7.2 80 20-104 217-299 (366)
463 TIGR03018 pepcterm_TyrKin exop 72.8 11 0.00023 36.4 6.8 48 22-70 150-197 (207)
464 PRK12727 flagellar biosynthesi 72.0 10 0.00023 42.1 7.1 74 20-96 428-506 (559)
465 COG0523 Putative GTPases (G3E 71.7 5.6 0.00012 41.4 4.8 89 21-113 85-184 (323)
466 PRK09841 cryptic autophosphory 71.0 11 0.00024 43.8 7.5 67 19-86 639-706 (726)
467 cd02040 NifH NifH gene encodes 69.6 9.7 0.00021 37.9 5.9 82 19-103 115-203 (270)
468 KOG3905 Dynein light intermedi 69.3 4.2 9.1E-05 42.0 3.1 59 72-130 221-289 (473)
469 PRK06731 flhF flagellar biosyn 69.0 14 0.0003 37.5 6.8 66 20-87 154-225 (270)
470 PRK09563 rbgA GTPase YlqF; Rev 68.5 9 0.0002 39.1 5.5 27 7-33 150-178 (287)
471 PRK14845 translation initiatio 68.4 13 0.00028 44.8 7.3 69 154-227 937-1008(1049)
472 cd00550 ArsA_ATPase Oxyanion-t 67.7 20 0.00044 35.8 7.8 69 19-87 123-203 (254)
473 TIGR03596 GTPase_YlqF ribosome 66.2 5.5 0.00012 40.4 3.3 25 7-31 147-173 (276)
474 PRK11519 tyrosine kinase; Prov 66.0 17 0.00038 42.1 7.7 67 19-86 634-701 (719)
475 KOG1534 Putative transcription 65.2 13 0.00028 36.3 5.3 77 23-103 100-191 (273)
476 COG0455 flhG Antiactivator of 63.6 41 0.00089 33.9 9.0 63 21-85 113-178 (262)
477 PRK11889 flhF flagellar biosyn 63.2 18 0.0004 38.8 6.5 66 20-87 320-391 (436)
478 KOG0780 Signal recognition par 62.9 16 0.00035 38.8 5.9 65 17-86 180-253 (483)
479 PRK13232 nifH nitrogenase redu 62.5 12 0.00026 37.7 4.9 83 19-103 115-202 (273)
480 COG1192 Soj ATPases involved i 62.3 17 0.00037 36.1 6.0 82 19-102 118-206 (259)
481 PRK12726 flagellar biosynthesi 61.7 20 0.00044 38.3 6.5 64 20-86 285-355 (407)
482 PRK13233 nifH nitrogenase redu 61.2 15 0.00031 37.0 5.3 77 19-103 117-205 (275)
483 COG1161 Predicted GTPases [Gen 61.1 4.6 9.9E-05 42.1 1.6 26 7-32 161-188 (322)
484 TIGR00347 bioD dethiobiotin sy 60.9 24 0.00052 32.3 6.4 16 65-80 121-136 (166)
485 COG0489 Mrp ATPases involved i 60.8 17 0.00036 36.8 5.6 68 17-86 163-232 (265)
486 KOG3022 Predicted ATPase, nucl 60.3 8.8 0.00019 38.8 3.4 66 15-81 151-218 (300)
487 PF08438 MMR_HSR1_C: GTPase of 60.3 6 0.00013 34.4 2.0 34 79-116 1-34 (109)
488 PF09547 Spore_IV_A: Stage IV 60.1 59 0.0013 35.2 9.5 67 63-132 170-238 (492)
489 PRK12723 flagellar biosynthesi 59.8 19 0.00042 38.5 6.1 66 19-86 253-325 (388)
490 PF09377 SBDS_C: SBDS protein 59.4 53 0.0012 29.2 8.0 55 354-410 68-122 (125)
491 TIGR03348 VI_IcmF type VI secr 57.9 11 0.00023 46.4 4.2 64 23-86 163-256 (1169)
492 TIGR01287 nifH nitrogenase iro 56.8 21 0.00045 35.9 5.6 83 19-103 114-202 (275)
493 PRK12724 flagellar biosynthesi 56.5 31 0.00068 37.3 7.0 66 19-86 298-372 (432)
494 COG1500 Predicted exosome subu 55.8 19 0.00041 35.3 4.7 62 356-419 165-226 (234)
495 PRK05703 flhF flagellar biosyn 54.4 35 0.00076 37.0 7.1 65 20-86 299-370 (424)
496 PRK13505 formate--tetrahydrofo 53.9 24 0.00051 39.3 5.6 65 63-130 362-428 (557)
497 TIGR02475 CobW cobalamin biosy 53.8 56 0.0012 34.3 8.3 37 21-57 93-136 (341)
498 PF13500 AAA_26: AAA domain; P 53.8 47 0.001 31.5 7.2 77 20-103 99-183 (199)
499 PF06564 YhjQ: YhjQ protein; 53.0 60 0.0013 32.4 7.9 75 19-101 116-191 (243)
500 PRK13235 nifH nitrogenase redu 51.4 36 0.00078 34.2 6.3 81 19-102 116-203 (274)
No 1
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.5e-177 Score=1340.95 Aligned_cols=528 Identities=57% Similarity=0.981 Sum_probs=520.7
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+|+.|.+||||||||+||++|++|+|++|+||+|||||++|+++||..+.++|.++++.+|+|+||+||+.++++++.++
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~e 151 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQE 151 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEe
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSA 176 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~ 176 (547)
+++.+|+++.+.+.+|||+|.||+++|++|++.+|+|.++.++|++|++||+|||+|+|+++++||++|++++||+|.++
T Consensus 152 Ie~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m 231 (603)
T COG0481 152 IEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMM 231 (603)
T ss_pred HHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCC-CCCCCCCCCCCCcceEEeeeccCCCCc
Q 008991 177 ATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNK-SIVEPLPGFKPAKHMVFSGLYPADGSD 255 (547)
Q Consensus 177 ~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~-~~~~~l~~~~~~~p~v~~~i~p~~~~d 255 (547)
.+|+.+.|.++|++.|++.+++++.||||||+++|+|++.++++|||+|+.+ +..+|+|||++++||||+++||.+.+|
T Consensus 232 ~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf~GlyPid~~d 311 (603)
T COG0481 232 STGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDD 311 (603)
T ss_pred ecCCEEEEEEEeeccCCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCceEEEeecccChhH
Confidence 9999999999999999999999999999999999999999999999999665 667999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeC
Q 008991 256 FEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQN 335 (547)
Q Consensus 256 ~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~ 335 (547)
|+.|++||+||.+||+||+|++|+|.|||+||||||||+|||||++|||+||||+++++|+|+|.|+...++|++..++|
T Consensus 312 ye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y~v~~~~g~~~~i~N 391 (603)
T COG0481 312 YEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYKVELTDGEEIEVDN 391 (603)
T ss_pred HHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEEEEEEcCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCc
Q 008991 336 PASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTS 415 (547)
Q Consensus 336 p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~ 415 (547)
|++||+. .+|..+.|||++++|++|+||+|+||++|+++||.+.+|+|++.+|++|.|++||+|++.||||+|||.|+
T Consensus 392 Ps~~P~~--~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~sk 469 (603)
T COG0481 392 PSDLPDP--NKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISK 469 (603)
T ss_pred hHhCCCh--hhhheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCceEEEEEecchHHHHHHHhHhhhcccc
Confidence 9999984 57999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeeeCCEEEEEeccc
Q 008991 416 GYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARETIS 495 (547)
Q Consensus 416 G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~~~~~~~~~~i~ 495 (547)
|||||+|+|.+|+++||||+||++||++|||||+|+||++|+++||.+|+|||++||||||+|||||+||+||||||||+
T Consensus 470 GYAS~DYe~~~y~~~~lVK~dIlvNge~VDALs~ivHrd~A~~rgr~~~~KlKelIPrq~FeipIQAaIg~kiIARetIk 549 (603)
T COG0481 470 GYASFDYEFIGYRESDLVKVDILVNGEKVDALSFIVHRDNAYERGRELVEKLKELIPRQQFEIPIQAAIGSKIIARETIK 549 (603)
T ss_pred ceeeeccccccccccceEEEEEEecCccccceeeeechhHHHHHHHHHHHHHHhhccHhheeeeeehhhCCeEEEhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccCchhhhhhhHHHHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 496 AMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 496 ~~~k~v~~k~~ggd~~rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
|+|||||||||||||||||||||||||||||||++|||+||||||+++||.
T Consensus 550 alRKdVlAKCYGGDisRKrKLLeKQKeGKKRMK~iG~VeiPQeAFlavLk~ 600 (603)
T COG0481 550 ALRKDVLAKCYGGDISRKRKLLEKQKEGKKRMKQIGNVEIPQEAFLAVLKM 600 (603)
T ss_pred HhhcchhhhhcCCcchHHHHHHHHhhhhhHHHHhcCCCcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999986
No 2
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-150 Score=1166.11 Aligned_cols=527 Identities=64% Similarity=1.004 Sum_probs=519.9
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
++.|.+|+||||||+||++|+++++++||||||||||.+|+++||..++++|.+.|+.+|+|+||+|++.++++.+..++
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~ 201 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQL 201 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEec
Q 008991 98 KSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAA 177 (547)
Q Consensus 98 ~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~ 177 (547)
.+.|++++.+++.+|||+|.|++++|++|++++|+|....++||++++||+|||+|+|+|+++||.+|.+++||+|..+.
T Consensus 202 ~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~ 281 (650)
T KOG0462|consen 202 FELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAA 281 (650)
T ss_pred HHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCC--CCCCCCCCCCCCcceEEeeeccCCCCc
Q 008991 178 TGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNK--SIVEPLPGFKPAKHMVFSGLYPADGSD 255 (547)
Q Consensus 178 ~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~--~~~~~l~~~~~~~p~v~~~i~p~~~~d 255 (547)
+++.+.++++++|.|++.++.++.|||+|||++++++++++++||||++.. .+.+++|+|++++||+|++.+|.+++|
T Consensus 282 t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvFvg~fP~dgsd 361 (650)
T KOG0462|consen 282 TGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVFVGLFPLDGSD 361 (650)
T ss_pred cCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEEeccccCccch
Confidence 999999999999999999999999999999999999999999999999887 677999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeC
Q 008991 256 FEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQN 335 (547)
Q Consensus 256 ~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~ 335 (547)
|+.|+++++||++||+++.+.+++|.|||+||||||+|+|||+|+.|||+||||.++++|+|+|+||....+|.+..++|
T Consensus 362 ~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~~~~~~~~~~i~n 441 (650)
T KOG0462|consen 362 YETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRVVYSNGDEILISN 441 (650)
T ss_pred hhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEEEecCCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCc
Q 008991 336 PASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTS 415 (547)
Q Consensus 336 p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~ 415 (547)
|+.||+ +..+..++||++.++|++|+||+|.||++|++|||++.+|.+++++|++|+|.+|++|++.||+++|||.|+
T Consensus 442 p~~fp~--~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~ts 519 (650)
T KOG0462|consen 442 PALFPD--PSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTS 519 (650)
T ss_pred hhhCCC--cccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEEEEEecChHHHHHHHHHHHhcccc
Confidence 999998 478899999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeeeCCEEEEEeccc
Q 008991 416 GYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARETIS 495 (547)
Q Consensus 416 G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~~~~~~~~~~i~ 495 (547)
|||||+|+|++|+++||+|+||++||+.||+||+|+|+++|+++||.||+|||+.||||+|+|.|||++|+|+||||||+
T Consensus 520 GyAs~dye~~gY~~sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~ev~iqa~igsk~iare~i~ 599 (650)
T KOG0462|consen 520 GYASFDYEDAGYQASDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFEVHIQACIGSKNIARETIS 599 (650)
T ss_pred ceeEEeecccccccccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccCchhhhhhhHHHHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 496 AMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 496 ~~~k~v~~k~~ggd~~rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
|+||||+|||||||+|||+|||+||||||||||++|||+||||+|+++||+
T Consensus 600 a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~vgnI~ipkeaf~~vlKr 650 (650)
T KOG0462|consen 600 AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTVGNIRIPKEAFINVLKR 650 (650)
T ss_pred HhccceeeEecCCchhhHHHHHHhhhcCceeeeccccEecCHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999985
No 3
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=8.6e-147 Score=1212.20 Aligned_cols=528 Identities=57% Similarity=0.963 Sum_probs=507.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+++.+.++|||||||.+|..++.++++.||++++|+|+++|++.||..+|..+...++|+++|+||+|+.+++.+...++
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~e 145 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKE 145 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999888889999999999999987777777788
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEe
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSA 176 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~ 176 (547)
+.+.+++...+++++||++|.|+++|+++|.+.+|+|..+.++|++++||++|+|+++|+++++||++|+|++||+|.++
T Consensus 146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~ 225 (595)
T TIGR01393 146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFM 225 (595)
T ss_pred HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEe
Confidence 88888876667899999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCC-CCCCCCCCCCcceEEeeeccCCCCc
Q 008991 177 ATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSI-VEPLPGFKPAKHMVFSGLYPADGSD 255 (547)
Q Consensus 177 ~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~-~~~l~~~~~~~p~v~~~i~p~~~~d 255 (547)
++++.++|.+++.++++..+++++.|||||++.+|+++..++++||||++.+.+ ..++|++++++||+|++++|.+.+|
T Consensus 226 ~~~~~~~v~~i~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d 305 (595)
T TIGR01393 226 STGKEYEVDEVGVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLYPIDTED 305 (595)
T ss_pred cCCCeeEEeEEEEecCCceECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEEEEEEECCccc
Confidence 999999999999999988899999999999999899888999999999988744 3689999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeC
Q 008991 256 FEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQN 335 (547)
Q Consensus 256 ~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~ 335 (547)
+++|++||+||++|||||+|+++++.++|.||||||||+|||||++|||+||||+++++|+|+|+||||+++|+...++|
T Consensus 306 ~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V~Yreti~~g~~~~~~~ 385 (595)
T TIGR01393 306 YEDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYRVYLTNGEVIEVDN 385 (595)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEEEEEEEecCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCc
Q 008991 336 PASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTS 415 (547)
Q Consensus 336 p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~ 415 (547)
|++||+. ..+..+||||++++|.+|++|+|+||++|++|||++++|++.+++++.|+|++|++|++.||+++|||+|+
T Consensus 386 p~~~p~~--~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~ 463 (595)
T TIGR01393 386 PSDLPDP--GKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISR 463 (595)
T ss_pred cccCCCc--ccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcC
Confidence 9999983 35788999999999999999999999999999999999999876799999999999985599999999999
Q ss_pred CeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeeeCCEEEEEeccc
Q 008991 416 GYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARETIS 495 (547)
Q Consensus 416 G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~~~~~~~~~~i~ 495 (547)
|||||+|+|+||+++||||+||++||++|||||+||||++|+++||++|+|||++||||||+|+|||+||+||||||||+
T Consensus 464 G~gs~~~~~~~Y~~~~~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~qa~~~~~~~a~~~~~ 543 (595)
T TIGR01393 464 GYASFDYELIGYRPSDLVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLKELIPRQQFEIPIQAAIGGKIIARETIK 543 (595)
T ss_pred CEEEEEEEECCccccceEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhCChhhccchhhhhhCCEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccCchhhhhhhHHHHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 496 AMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 496 ~~~k~v~~k~~ggd~~rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
|||||||||||||||||||||||||||||||||+||||+||||||+++|+.
T Consensus 544 ~~~k~v~~k~~ggd~~rk~kll~~q~~gk~~~~~~g~v~~~~~~f~~~~~~ 594 (595)
T TIGR01393 544 ALRKDVTAKCYGGDITRKRKLLEKQKEGKKRMKQIGKVEVPQEAFLAVLKV 594 (595)
T ss_pred hhccceeeeccCCCchHHHHHHHHhhhchHHHhccCCEecCHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999985
No 4
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=2e-146 Score=1210.36 Aligned_cols=527 Identities=58% Similarity=0.987 Sum_probs=507.2
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+++++.++|||||||.||..++.++++.||++|+|||+++|++.||..+|..+...++|+|+|+||+|+.+++.+...++
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~e 149 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQE 149 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHH
Confidence 56689999999999999999999999999999999999999999999999999889999999999999988877777788
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEe
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSA 176 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~ 176 (547)
+.+.+++.+.+++++||++|.|+++|+++|.+.+|+|..+.++||+++||++|+|+++|+++++||++|+|++||+|.++
T Consensus 150 i~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~ 229 (600)
T PRK05433 150 IEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMM 229 (600)
T ss_pred HHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEe
Confidence 88888877667999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCC-CCCCCCCCCCcceEEeeeccCCCCc
Q 008991 177 ATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSI-VEPLPGFKPAKHMVFSGLYPADGSD 255 (547)
Q Consensus 177 ~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~-~~~l~~~~~~~p~v~~~i~p~~~~d 255 (547)
+++..++|.+|+.++++..+++++.|||||++.+|+++..++++||||++.+.+ ..++|+|++++||+|++++|.+.+|
T Consensus 230 ~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d 309 (600)
T PRK05433 230 STGKEYEVDEVGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFAGLYPVDSDD 309 (600)
T ss_pred cCCceEEEEEeeccCCCceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcEEEEEEEECCccC
Confidence 999999999999988888999999999999999888888999999999988744 3689999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeC
Q 008991 256 FEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQN 335 (547)
Q Consensus 256 ~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~ 335 (547)
+++|++||+||++|||||+|+.+++.++|.||||||||+|||||++|||+||||+++++++|+|+||||+++|+...++|
T Consensus 310 ~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P~V~Yreti~~g~~~~~~~ 389 (600)
T PRK05433 310 YEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYEVTLTDGEVIEVDN 389 (600)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecCEEEEEEEEeCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCc
Q 008991 336 PASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTS 415 (547)
Q Consensus 336 p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~ 415 (547)
|++||+. ..++.++|||++++|.+|++|+|+||++|++|||++++|++.+ ++++|+|++|++||+.||+++|||+|+
T Consensus 390 p~~~pds--~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~-~~~~i~~~~Pl~e~~~~~~~~Lks~T~ 466 (600)
T PRK05433 390 PSKLPDP--GKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG-NRVELTYELPLAEIVFDFFDRLKSVSR 466 (600)
T ss_pred cccCCCc--cccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC-CeEEEEEEechHHhhhhHHHHhHhhcC
Confidence 9999973 5788999999999999999999999999999999999999976 589999999999995599999999999
Q ss_pred CeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeeeCCEEEEEeccc
Q 008991 416 GYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARETIS 495 (547)
Q Consensus 416 G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~~~~~~~~~~i~ 495 (547)
|||||+|+|+||+++||||+||++||++|||||+||||++|+.+||++|+|||++||||||+|||||+||+||||||||+
T Consensus 467 G~gs~~~~~~~Y~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~qa~~~~~~~~~~~i~ 546 (600)
T PRK05433 467 GYASLDYEFIGYRESDLVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLKELIPRQQFEIPIQAAIGSKIIARETIK 546 (600)
T ss_pred CEEEEEEEECCcccccEEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhCChhhccchhhhhhCCEEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccCchhhhhhhHHHHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 496 AMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 496 ~~~k~v~~k~~ggd~~rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
|+||||||||||||||||||||+||||||||||+||||+||||||+++|+.
T Consensus 547 ~~rk~v~~k~~~gd~~rk~kll~~q~~gk~~~~~~g~v~~~~~~f~~~~~~ 597 (600)
T PRK05433 547 ALRKDVLAKCYGGDISRKRKLLEKQKEGKKRMKQIGNVEIPQEAFLAVLKV 597 (600)
T ss_pred hhhcchhhhhcCCChHHHHHHHHHhhhhhHHHHhcCCEecCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999985
No 5
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=5.9e-76 Score=647.51 Aligned_cols=431 Identities=26% Similarity=0.374 Sum_probs=387.7
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
.++++++||||||||.||..++.++++.+|+++||||+.+|++.||..+|..+...++|+|+|+||+|+++++++++.++
T Consensus 60 ~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~e 139 (594)
T TIGR01394 60 RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDE 139 (594)
T ss_pred EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999988888777777
Q ss_pred HHHhcC---CC----Cccceeccccccc----------cccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEE
Q 008991 97 LKSMFD---LD----PSEALLTSAKTGQ----------GLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICH 159 (547)
Q Consensus 97 i~~~l~---~~----~~~vi~~SAk~g~----------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~ 159 (547)
+.+.+. .. ..|++++||++|. |+..||+.|++.+|+|..+.++||+++|++++++++.|++++
T Consensus 140 i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~ 219 (594)
T TIGR01394 140 VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAI 219 (594)
T ss_pred HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEE
Confidence 777652 11 2478999999996 799999999999999988889999999999999999999999
Q ss_pred EEEecCccccCCEEEEecCCC---eeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCC
Q 008991 160 VAVVDGTLRKGDKISSAATGQ---AYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLP 235 (547)
Q Consensus 160 ~rV~~G~lk~gd~v~~~~~~~---~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~ 235 (547)
+||++|+|++||.|.+.+.+. ..+|.++..+.+ ++.+++++.|||++.+. |+ +++.+||||++.+.+ .++|
T Consensus 220 gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~-gl---~~i~~Gdtl~~~~~~-~~l~ 294 (594)
T TIGR01394 220 GRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA-GL---EDINIGETIADPEVP-EALP 294 (594)
T ss_pred EEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe-CC---cccCCCCEEeCCCcc-ccCC
Confidence 999999999999999998743 468888887765 67899999999999886 65 678999999998755 7899
Q ss_pred CCCCCcceEEeeeccCCC---Cchh------HHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHH
Q 008991 236 GFKPAKHMVFSGLYPADG---SDFE------VLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQ 306 (547)
Q Consensus 236 ~~~~~~p~v~~~i~p~~~---~d~~------~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~ 306 (547)
+++.++|++++.+.|.+. ++.. +|+++|.|++++||||++++++++ ..|.++++|+|||+|++|||+|
T Consensus 295 ~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~---~~~~v~g~GelHL~il~e~lrr 371 (594)
T TIGR01394 295 TITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESA---DKFEVSGRGELHLSILIETMRR 371 (594)
T ss_pred CCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCC---CeEEEEEECHHHHHHHHHHHhc
Confidence 999999999999988643 3332 499999999999999999998764 4578888999999999999999
Q ss_pred HhCCeeEEecCceeeEEEeeCCCEEEEeCCCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEc
Q 008991 307 EYGAHVISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFI 386 (547)
Q Consensus 307 e~g~~v~~t~P~V~Yre~~~~g~~~~~~~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~ 386 (547)
| |+|+.+++|+|+||| + +| .+||||++++|.||+||+|+||++|++|||++++|+..
T Consensus 372 e-g~e~~~~~P~V~yre-i-~g--------------------~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~ 428 (594)
T TIGR01394 372 E-GFELQVGRPQVIYKE-I-DG--------------------KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPS 428 (594)
T ss_pred c-CceEEEeCCEEEEEe-C-CC--------------------eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEEC
Confidence 9 999999999999999 4 34 28999999999999999999999999999999999987
Q ss_pred CCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHH
Q 008991 387 DSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEK 466 (547)
Q Consensus 387 ~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~ 466 (547)
+++++.|+|.+|++|++ +|+++|+|+|+|+|+|+++|+||++.. -.+.-..||..| |.+.|.+..+.
T Consensus 429 ~~~~~~i~~~vP~~~l~-~y~~~l~s~T~G~g~~~~~f~~Y~~~~-~~i~~~~~g~~~-----------~~~~g~~~~~~ 495 (594)
T TIGR01394 429 GNGRTRLEFKIPSRGLI-GFRTEFLTDTRGTGIMNHVFDEYEPWK-GEIETRRNGSLV-----------SMEDGTATAYA 495 (594)
T ss_pred CCCEEEEEEEeChHHhh-hHHHHHHhhcCCeEEEEEEeccceeCC-CcCCCCCceeEE-----------ECCCCcChHhh
Confidence 77899999999999998 899999999999999999999999875 444446899886 78899999999
Q ss_pred hhccCCCCceeeeeeeee-CCEEEEE
Q 008991 467 LKKFIDRQMFEITIQAAI-GSKVIAR 491 (547)
Q Consensus 467 lk~~i~r~~~~v~~q~~~-~~~~~~~ 491 (547)
|..+.+|..|+|..|..+ .|.||.-
T Consensus 496 ~~~~~~rg~~f~~~~~~vy~g~i~g~ 521 (594)
T TIGR01394 496 LWNLQERGVMFVSPGTEVYEGMIIGE 521 (594)
T ss_pred hhchhhcccEEeCCCCceeCceEEEe
Confidence 999999999999999998 8899873
No 6
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=8e-75 Score=637.70 Aligned_cols=440 Identities=24% Similarity=0.323 Sum_probs=391.5
Q ss_pred CCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecC
Q 008991 9 GPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKI 83 (547)
Q Consensus 9 ~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKi 83 (547)
+.|+|.. ++.+++++++||||||.+|..++.++++.+|++++|+|+++|++.||..+|..+...++|.++|+||+
T Consensus 51 erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 51 ERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred cCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECc
Confidence 3566653 24677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhcC---C----CCccceeccccccc----------cccccHHHHHhhCCCCCccccCceeEEEE
Q 008991 84 DQPTADPDRVKAQLKSMFD---L----DPSEALLTSAKTGQ----------GLEHVLPAVIERIPPPRGIINSSLRMLLL 146 (547)
Q Consensus 84 Dl~~~~~~~~~~~i~~~l~---~----~~~~vi~~SAk~g~----------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~ 146 (547)
|+++++++.+.+++.+.+. . ...|++++||++|. |+..|+++|++++|+|..+.++||+++||
T Consensus 131 D~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~ 210 (607)
T PRK10218 131 DRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQIS 210 (607)
T ss_pred CCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 9999999888888888762 1 13579999999998 58899999999999998888999999999
Q ss_pred eeeccccccEEEEEEEecCccccCCEEEEecC-CC--eeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccC
Q 008991 147 DSYYDEYKGVICHVAVVDGTLRKGDKISSAAT-GQ--AYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGD 222 (547)
Q Consensus 147 ~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~-~~--~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gd 222 (547)
++++|+|.|+++++||++|+|++||.|.+.+. ++ ..+|.++..+.+ ++.+++++.||||++++ |+ +++.+||
T Consensus 211 k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~-gl---~~~~~Gd 286 (607)
T PRK10218 211 QLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT-GL---GELNISD 286 (607)
T ss_pred eeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE-Cc---cccccCc
Confidence 99999999999999999999999999999876 44 567888876655 68899999999999986 65 7789999
Q ss_pred cccCCCCCCCCCCCCCCCcceEEeeeccCC---CCchhHH------HHHHHhhhcCCceeEEEecCcccccceEEEeecc
Q 008991 223 TLYHNKSIVEPLPGFKPAKHMVFSGLYPAD---GSDFEVL------NHAIERLTCNDASVSVTKETSTALGLGFRCGFLG 293 (547)
Q Consensus 223 tl~~~~~~~~~l~~~~~~~p~v~~~i~p~~---~~d~~~L------~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG 293 (547)
||++.+.+ .++|.++.++|++.+.+.|.+ .+|..++ .++|.+++++||||+|++++++ ..|.++++|
T Consensus 287 Tl~~~~~~-~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~---~~~~v~g~G 362 (607)
T PRK10218 287 TVCDTQNV-EALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDA---DAFRVSGRG 362 (607)
T ss_pred EEecCCCc-ccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCC---CeEEEEEEc
Confidence 99987754 788999999999999999888 6677775 4566666779999999997653 457777799
Q ss_pred cchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeCCCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHH
Q 008991 294 LLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLC 373 (547)
Q Consensus 294 ~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l 373 (547)
+|||+|++|||+|| |+|+.+++|+|+|||+ +|+ .+|||++++|.||+||+|+||++|
T Consensus 363 elHL~il~e~lrre-g~e~~~~~P~V~yret--~g~--------------------klEPi~~v~i~vP~e~~G~V~~~l 419 (607)
T PRK10218 363 ELHLSVLIENMRRE-GFELAVSRPKVIFREI--DGR--------------------KQEPYENVTLDVEEQHQGSVMQAL 419 (607)
T ss_pred HHHHHHHHHHHHhC-CceEEEeCCEEEEEEE--CCE--------------------EeCCeEEEEEEechhhHHHHHHHH
Confidence 99999999999999 9999999999999998 543 589999999999999999999999
Q ss_pred hhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceeccceeeeEeecCcccCcceeeeeh
Q 008991 374 SERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHN 453 (547)
Q Consensus 374 ~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~ 453 (547)
++|||++++|+..+++++.|+|.+|++|++ +|+++|+|+|+|+|+|+++|+||++..--.+.-..||..|
T Consensus 420 ~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~-~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~~~~~~g~~~--------- 489 (607)
T PRK10218 420 GERKGDLKNMNPDGKGRVRLDYVIPSRGLI-GFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLI--------- 489 (607)
T ss_pred HhcCCEEeccEECCCCEEEEEEEcCHHHHh-hHHHHhhhhCCCeEEEEEEecCccCCCCCCCCCccceEEE---------
Confidence 999999999998767899999999999997 8999999999999999999999998654445556888886
Q ss_pred HHHHHHHHHHHHHhhccCCCCceeeeeeeee-CCEEEEE
Q 008991 454 LKAQRVGRELVEKLKKFIDRQMFEITIQAAI-GSKVIAR 491 (547)
Q Consensus 454 ~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~-~~~~~~~ 491 (547)
|.+.|.+..+.|..+.+|..|+|..|..+ .|.||.-
T Consensus 490 --~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~ 526 (607)
T PRK10218 490 --SNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGI 526 (607)
T ss_pred --ECCCCcCHHHhhhhhhhccceeecCCCcEecceEEee
Confidence 77899999999999999999999999998 8899873
No 7
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-71 Score=610.52 Aligned_cols=409 Identities=30% Similarity=0.439 Sum_probs=364.3
Q ss_pred EEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHH
Q 008991 13 SEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 13 T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
|..+.+ ++.+||||||||+||..++.++++.+|+|++|+||.+|+++||...|++|.+.++|.++++||||+..+++..
T Consensus 69 s~~~~~-~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~ 147 (697)
T COG0480 69 TLFWKG-DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYL 147 (697)
T ss_pred EEEEcC-ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhh
Confidence 334443 6999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcCCCC-------------------------------------------------------------------
Q 008991 93 VKAQLKSMFDLDP------------------------------------------------------------------- 105 (547)
Q Consensus 93 ~~~~i~~~l~~~~------------------------------------------------------------------- 105 (547)
+.+++...++...
T Consensus 148 ~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~ 227 (697)
T COG0480 148 VVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEK 227 (697)
T ss_pred hHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHH
Confidence 8888877664310
Q ss_pred -------------------------ccceeccccccccccccHHHHHhhCCCCCc--------------------cccCc
Q 008991 106 -------------------------SEALLTSAKTGQGLEHVLPAVIERIPPPRG--------------------IINSS 140 (547)
Q Consensus 106 -------------------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~--------------------~~~~p 140 (547)
.|+++.||.++.|++.||+++++++|+|.. +.++|
T Consensus 228 yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p 307 (697)
T COG0480 228 YLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGP 307 (697)
T ss_pred HhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCc
Confidence 137889999999999999999999999832 23789
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEeccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEAR 219 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~ 219 (547)
+.+++|++.+|++.|.++|+|||||+|++||.+++...+++.+|.++..+++ .+.+++++.||||+++. |+ +++.
T Consensus 308 ~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~-Gl---~~~~ 383 (697)
T COG0480 308 LSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALV-GL---KDAT 383 (697)
T ss_pred eEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEE-cc---cccc
Confidence 9999999999999999999999999999999999999999999999999998 47899999999999987 76 6679
Q ss_pred ccCcccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHH
Q 008991 220 IGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDV 299 (547)
Q Consensus 220 ~Gdtl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev 299 (547)
+|||+|+.+ ....++.+.+|.|++..+++|.+++|.+||.+||.+|+++||++.++.+++ +|+++.+| +|+|||||
T Consensus 384 tGdTl~~~~-~~v~~~~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~E--tge~iIsG-mGELHLei 459 (697)
T COG0480 384 TGDTLCDEN-KPVILESMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEE--TGETIISG-MGELHLEI 459 (697)
T ss_pred cCCeeecCC-CccccccccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCC--cccEEEEe-cchhhHHH
Confidence 999999887 447788888899999999999999999999999999999999999999865 59999999 69999999
Q ss_pred HHHHHHHHhCCeeEEecCceeeEEEeeCCCEE------------------------------EEe---------------
Q 008991 300 FHQRLEQEYGAHVISTVPTVPYIFEYSDGSKA------------------------------EVQ--------------- 334 (547)
Q Consensus 300 ~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~------------------------------~~~--------------- 334 (547)
+++||+++||+++.+++|+|+||||++..... .+.
T Consensus 460 ~~drl~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ 539 (697)
T COG0480 460 IVDRLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPA 539 (697)
T ss_pred HHHHHHhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHH
Confidence 99999999999999999999999999732100 010
Q ss_pred -----------C-CCCCCC-C--------------c---c--------------cccceeecceEEEEEEcCCCcHHHHH
Q 008991 335 -----------N-PASLPS-N--------------P---K--------------KRVTACWEPTVVATIIIPSEYVGSVI 370 (547)
Q Consensus 335 -----------~-p~~fp~-~--------------~---~--------------~~i~~llEP~~~~~I~vP~e~~G~v~ 370 (547)
. .++||+ | + . ...+.||||+|+++|.+|++|+|+||
T Consensus 540 ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~ 619 (697)
T COG0480 540 VEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVI 619 (697)
T ss_pred HHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhH
Confidence 1 368886 1 0 0 11258999999999999999999999
Q ss_pred HHHhhcCeeEeeeeEcC-CcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceecc
Q 008991 371 TLCSERRGQQLEYSFID-SQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQAD 431 (547)
Q Consensus 371 ~~l~~rRG~~~~~~~~~-~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 431 (547)
++|++|||++++++..+ +++..+++++|++||+ +|.++|||+|+|.|+|+++|+||++.+
T Consensus 620 ~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emf-gya~dLRs~T~Gra~~~m~f~~y~~vp 680 (697)
T COG0480 620 GDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMF-GYATDLRSATQGRASFSMEFDHYEEVP 680 (697)
T ss_pred HhhhhcceEEeceeeccCCceEEEEEEechHHhc-cchhhhHhhcCCceeEEEEecccEeCC
Confidence 99999999999999874 5789999999999997 899999999999999999999999965
No 8
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-72 Score=587.06 Aligned_cols=403 Identities=27% Similarity=0.438 Sum_probs=359.2
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
+.++.+|+||||||.||.-|++++|+..|||++|+|+..|+++||...|+++.+.++|.|.++||||+.++++-.+++++
T Consensus 101 w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i 180 (721)
T KOG0465|consen 101 WRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQI 180 (721)
T ss_pred eccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcCCCC------------------------------------------------------------------------
Q 008991 98 KSMFDLDP------------------------------------------------------------------------ 105 (547)
Q Consensus 98 ~~~l~~~~------------------------------------------------------------------------ 105 (547)
...++..+
T Consensus 181 ~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLe 260 (721)
T KOG0465|consen 181 RTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLE 260 (721)
T ss_pred HhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 87764321
Q ss_pred ----------------------ccceeccccccccccccHHHHHhhCCCCCc--------------------ccc-Ccee
Q 008991 106 ----------------------SEALLTSAKTGQGLEHVLPAVIERIPPPRG--------------------IIN-SSLR 142 (547)
Q Consensus 106 ----------------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~--------------------~~~-~p~~ 142 (547)
.|++++||..+.||..|||++++++|+|.. ..+ .||.
T Consensus 261 e~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv 340 (721)
T KOG0465|consen 261 EEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFV 340 (721)
T ss_pred cCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCcee
Confidence 148999999999999999999999999853 122 3999
Q ss_pred EEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEeccccccccccc
Q 008991 143 MLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIG 221 (547)
Q Consensus 143 ~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~G 221 (547)
++.|+...+++ |.+.|+||++|+|++||.|++.++++++++..+..+|. .+++++++.|||||++. |+ ++..|
T Consensus 341 ~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alf-Gi----dcasG 414 (721)
T KOG0465|consen 341 ALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALF-GI----DCASG 414 (721)
T ss_pred eeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeee-cc----ccccC
Confidence 99999999999 99999999999999999999999999999999988887 57899999999999987 76 88999
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHH
Q 008991 222 DTLYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFH 301 (547)
Q Consensus 222 dtl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~ 301 (547)
||+++.......+..+..|.|++.+++.|.+.+|.+++.+||.++..|||++++..+++ .|+++..| ||+|||||..
T Consensus 415 DTftd~~~~~~~m~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E--~kqTvIsG-MGELHLEIy~ 491 (721)
T KOG0465|consen 415 DTFTDKQNLALSMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPE--MKQTVISG-MGELHLEIYV 491 (721)
T ss_pred ceeccCccccceeeeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccc--cccchhhc-cchhhHHHHH
Confidence 99999853346677888999999999999999999999999999999999999999965 48999999 6999999999
Q ss_pred HHHHHHhCCeeEEecCceeeEEEeeCCCEE--------------------------------EEeC-------C------
Q 008991 302 QRLEQEYGAHVISTVPTVPYIFEYSDGSKA--------------------------------EVQN-------P------ 336 (547)
Q Consensus 302 erL~~e~g~~v~~t~P~V~Yre~~~~g~~~--------------------------------~~~~-------p------ 336 (547)
|||+||||+++++++|+|.||||+....+. +|.+ |
T Consensus 492 eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa 571 (721)
T KOG0465|consen 492 ERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPA 571 (721)
T ss_pred HHHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHH
Confidence 999999999999999999999998632110 1211 1
Q ss_pred --------------CCCCC---------------Ccc-----------------cccceeecceEEEEEEcCCCcHHHHH
Q 008991 337 --------------ASLPS---------------NPK-----------------KRVTACWEPTVVATIIIPSEYVGSVI 370 (547)
Q Consensus 337 --------------~~fp~---------------~~~-----------------~~i~~llEP~~~~~I~vP~e~~G~v~ 370 (547)
++||. |+. ..-.++|||||.++|++|+||.|.|+
T Consensus 572 ~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi 651 (721)
T KOG0465|consen 572 VEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVI 651 (721)
T ss_pred HHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhh
Confidence 34443 321 11248999999999999999999999
Q ss_pred HHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceecc
Q 008991 371 TLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQAD 431 (547)
Q Consensus 371 ~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 431 (547)
++|++|+|+|.+.+.. +++.+|.+++||++|+ +|.++|||+|+|.|.|+|||++|++..
T Consensus 652 ~~L~kR~a~I~~~d~~-~~~~ti~A~VPL~~mf-gYss~LRslTqGkgeftMEys~y~p~~ 710 (721)
T KOG0465|consen 652 GDLNKRKAQITGIDSS-EDYKTIKAEVPLNEMF-GYSSELRSLTQGKGEFTMEYSRYSPVP 710 (721)
T ss_pred hhhhhcccEEecccCC-CceEEEEecccHHHHh-hhhhhhhhhhcCcceEEEeecccCCCc
Confidence 9999999999999764 5789999999999998 899999999999999999999999864
No 9
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=6.7e-68 Score=597.53 Aligned_cols=402 Identities=27% Similarity=0.410 Sum_probs=351.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
.+++++|+|||||.||..++.++++.+|++++|+|+.+|++.||..+|..+...++|.|+++||+|+.+++.....++++
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~ 152 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIK 152 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999888777777765
Q ss_pred HhcCCC--------------------------------------------------------------------------
Q 008991 99 SMFDLD-------------------------------------------------------------------------- 104 (547)
Q Consensus 99 ~~l~~~-------------------------------------------------------------------------- 104 (547)
+.++..
T Consensus 153 ~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle 232 (693)
T PRK00007 153 DRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLE 232 (693)
T ss_pred HHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhC
Confidence 543320
Q ss_pred ---------------------CccceeccccccccccccHHHHHhhCCCCCc--------------------cccCceeE
Q 008991 105 ---------------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRG--------------------IINSSLRM 143 (547)
Q Consensus 105 ---------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~--------------------~~~~p~~~ 143 (547)
..|++++||+++.|+..||+.|++++|+|.. ++++|+.+
T Consensus 233 ~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a 312 (693)
T PRK00007 233 GEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSA 312 (693)
T ss_pred cCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEE
Confidence 1247888999999999999999999999852 23678999
Q ss_pred EEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccC
Q 008991 144 LLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGD 222 (547)
Q Consensus 144 ~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gd 222 (547)
+||++++|++.|+++++||++|+|++||+|++..+++..++.+++.+.+ +..+++++.|||||++. |+ +++++||
T Consensus 313 ~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~-gl---~~~~~Gd 388 (693)
T PRK00007 313 LAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAV-GL---KDTTTGD 388 (693)
T ss_pred EEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEe-CC---ccCCcCC
Confidence 9999999999999999999999999999999888888899999999988 57899999999999986 66 4678999
Q ss_pred cccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHH
Q 008991 223 TLYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQ 302 (547)
Q Consensus 223 tl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~e 302 (547)
||++.+.. ..++++..+.|+++++++|.++.|..+|.+||++|+++||||.|..++. +|+.+..| +|+||||++++
T Consensus 389 tL~~~~~~-~~l~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~e--tge~~l~g-~GelHLei~~~ 464 (693)
T PRK00007 389 TLCDEKNP-IILESMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEE--TGQTIIAG-MGELHLDIIVD 464 (693)
T ss_pred EeeCCCCc-cccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCC--CCCEEEEE-ecHHhHHHHHH
Confidence 99876633 4566777889999999999999999999999999999999999998754 47877777 79999999999
Q ss_pred HHHHHhCCeeEEecCceeeEEEeeCCCE-------------------EEE-----------e------------------
Q 008991 303 RLEQEYGAHVISTVPTVPYIFEYSDGSK-------------------AEV-----------Q------------------ 334 (547)
Q Consensus 303 rL~~e~g~~v~~t~P~V~Yre~~~~g~~-------------------~~~-----------~------------------ 334 (547)
||+++||+++.+++|.|+||||+++... ..+ .
T Consensus 465 rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~~ 544 (693)
T PRK00007 465 RMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVDK 544 (693)
T ss_pred HHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHHH
Confidence 9999999999999999999999854210 001 1
Q ss_pred --------C-CCCCCC-C--------------c---ccc--------------cceeecceEEEEEEcCCCcHHHHHHHH
Q 008991 335 --------N-PASLPS-N--------------P---KKR--------------VTACWEPTVVATIIIPSEYVGSVITLC 373 (547)
Q Consensus 335 --------~-p~~fp~-~--------------~---~~~--------------i~~llEP~~~~~I~vP~e~~G~v~~~l 373 (547)
. .++||+ + + .|+ ...|+|||++++|.||++|+|+||++|
T Consensus 545 G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L 624 (693)
T PRK00007 545 GIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDL 624 (693)
T ss_pred HHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHH
Confidence 0 267776 1 1 011 248999999999999999999999999
Q ss_pred hhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 374 SERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 374 ~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
++|||++.+++..+ ++..|++.+|++|++ +|.++|||+|+|+|+|.++|+||++.
T Consensus 625 ~~RRg~i~~~~~~~-~~~~i~a~vP~~e~~-g~~~~Lrs~T~G~a~~~~~f~~y~~v 679 (693)
T PRK00007 625 NSRRGQIEGMEDRG-GAKVIRAEVPLSEMF-GYATDLRSMTQGRATYSMEFDHYEEV 679 (693)
T ss_pred HhCCCeEecccccC-CcEEEEEEcCHHHhh-ccHHHHHhhcCCceEEEEEeceeeEC
Confidence 99999999998754 578999999999997 89999999999999999999999983
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.8e-67 Score=594.28 Aligned_cols=402 Identities=27% Similarity=0.405 Sum_probs=353.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
++++++|||||||.+|..++.++++.+|++++|||+.+|++.||..+|..+...++|.|+++||+|+.+++.+...+++.
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~ 150 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIK 150 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999887777777776
Q ss_pred HhcCCC--------------------------------------------------------------------------
Q 008991 99 SMFDLD-------------------------------------------------------------------------- 104 (547)
Q Consensus 99 ~~l~~~-------------------------------------------------------------------------- 104 (547)
+.++..
T Consensus 151 ~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~ 230 (691)
T PRK12739 151 DRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLE 230 (691)
T ss_pred HHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhc
Confidence 654330
Q ss_pred ---------------------CccceeccccccccccccHHHHHhhCCCCCc-------------------cccCceeEE
Q 008991 105 ---------------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRG-------------------IINSSLRML 144 (547)
Q Consensus 105 ---------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~-------------------~~~~p~~~~ 144 (547)
..|++++||.++.|++.||+.|++++|+|.. +++.|+.++
T Consensus 231 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~ 310 (691)
T PRK12739 231 GEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAAL 310 (691)
T ss_pred cCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEE
Confidence 0147889999999999999999999999852 346799999
Q ss_pred EEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCc
Q 008991 145 LLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDT 223 (547)
Q Consensus 145 v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdt 223 (547)
||++++|++.|+++++||++|+|++||.|++..+++.+++.+++.+.+ +..+++++.|||||++. |+ +++++|||
T Consensus 311 VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-gl---~~~~~gdt 386 (691)
T PRK12739 311 AFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAV-GL---KDTTTGDT 386 (691)
T ss_pred EEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEe-CC---CcccCCCE
Confidence 999999999999999999999999999999988888999999999987 57899999999999987 66 56799999
Q ss_pred ccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHH
Q 008991 224 LYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQR 303 (547)
Q Consensus 224 l~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~er 303 (547)
|++.+.. ..++++..++|+++++++|.+++|..+|.+||++|+++||+|.+..++. +|+.+..| +|+||||++++|
T Consensus 387 l~~~~~~-~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~e--tge~il~g-~GelHLei~~~r 462 (691)
T PRK12739 387 LCDEKAP-IILESMEFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEE--TGQTIISG-MGELHLDIIVDR 462 (691)
T ss_pred EeCCCCc-cccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCC--CCCEEEEE-ecHHHHHHHHHH
Confidence 9877643 5677778899999999999999999999999999999999999998754 48888888 699999999999
Q ss_pred HHHHhCCeeEEecCceeeEEEeeCCCE-----------------E--E-----------EeC------------------
Q 008991 304 LEQEYGAHVISTVPTVPYIFEYSDGSK-----------------A--E-----------VQN------------------ 335 (547)
Q Consensus 304 L~~e~g~~v~~t~P~V~Yre~~~~g~~-----------------~--~-----------~~~------------------ 335 (547)
|+++||+++.+++|.|+||||+++... . . +.+
T Consensus 463 L~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G 542 (691)
T PRK12739 463 MKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKG 542 (691)
T ss_pred HHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHH
Confidence 999999999999999999999865210 0 0 111
Q ss_pred ---------CCCCCC-C--------------c---ccc--------------cceeecceEEEEEEcCCCcHHHHHHHHh
Q 008991 336 ---------PASLPS-N--------------P---KKR--------------VTACWEPTVVATIIIPSEYVGSVITLCS 374 (547)
Q Consensus 336 ---------p~~fp~-~--------------~---~~~--------------i~~llEP~~~~~I~vP~e~~G~v~~~l~ 374 (547)
.++||+ + + .|+ ...|+|||++++|.||++|+|+||++|+
T Consensus 543 ~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~ 622 (691)
T PRK12739 543 LEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLN 622 (691)
T ss_pred HHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHH
Confidence 267776 1 1 011 2489999999999999999999999999
Q ss_pred hcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 375 ERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 375 ~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
+|||++.+++..+ ++..|++.+|++|++ +|.++|||+|+|+|+|.++|+||++.
T Consensus 623 ~RRg~i~~~~~~~-~~~~i~a~vP~~e~~-g~~~~Lr~~T~G~a~~~~~f~~y~~v 676 (691)
T PRK12739 623 RRRGQIQGMEARG-GAQIVKAFVPLSEMF-GYATDLRSATQGRATFSMEFDHYEEV 676 (691)
T ss_pred hcCCeEECccccC-CcEEEEEEeCHHHhh-ccHHHHHhhccCceEEEEEeccceEC
Confidence 9999999998755 567899999999997 99999999999999999999999983
No 11
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=5.5e-67 Score=591.59 Aligned_cols=405 Identities=29% Similarity=0.399 Sum_probs=355.2
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
..+++.++|||||||.||..++..+++.+|++++|+|++++++.++..+|..+...++|+++|+||+|+.+++...+.++
T Consensus 69 ~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~ 148 (687)
T PRK13351 69 DWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLED 148 (687)
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHhcCCC------------------------------------------------------------------------
Q 008991 97 LKSMFDLD------------------------------------------------------------------------ 104 (547)
Q Consensus 97 i~~~l~~~------------------------------------------------------------------------ 104 (547)
+++.++..
T Consensus 149 i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~ 228 (687)
T PRK13351 149 IEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELY 228 (687)
T ss_pred HHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77665431
Q ss_pred -----------------------CccceeccccccccccccHHHHHhhCCCCCc------------------cccCceeE
Q 008991 105 -----------------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRG------------------IINSSLRM 143 (547)
Q Consensus 105 -----------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~------------------~~~~p~~~ 143 (547)
..|++++||++|.|++.|+++|++++|+|.. ++++|+.+
T Consensus 229 l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a 308 (687)
T PRK13351 229 LEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLA 308 (687)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEE
Confidence 1247889999999999999999999999853 34679999
Q ss_pred EEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccC
Q 008991 144 LLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGD 222 (547)
Q Consensus 144 ~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gd 222 (547)
+||++++|++.|+++++||++|+|++||+|++.+.++.+++.+++.+.+ +..+++++.||||+.+. |+ +++.+||
T Consensus 309 ~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~-gl---~~~~~gd 384 (687)
T PRK13351 309 LVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVA-GL---KELETGD 384 (687)
T ss_pred EEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEE-Cc---ccCccCC
Confidence 9999999999999999999999999999999999998999999988865 67899999999999875 65 5678999
Q ss_pred cccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHH
Q 008991 223 TLYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQ 302 (547)
Q Consensus 223 tl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~e 302 (547)
||++.... .+++++..++|+++++++|.+++|..+|.+||++|+++||+|.|+.++. +|+.+..| +|+||||++++
T Consensus 385 tl~~~~~~-~~~~~~~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~e--tge~ii~g-~GelHLei~~~ 460 (687)
T PRK13351 385 TLHDSADP-VLLELLTFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEE--TGQTILSG-MGELHLEVALE 460 (687)
T ss_pred EEeCCCCc-cccCCCCCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCC--CCCEEEEE-ecHHHHHHHHH
Confidence 99877633 4566677899999999999999999999999999999999999998753 48888888 69999999999
Q ss_pred HHHHHhCCeeEEecCceeeEEEeeCCCE---------------E----EEe-----------------------------
Q 008991 303 RLEQEYGAHVISTVPTVPYIFEYSDGSK---------------A----EVQ----------------------------- 334 (547)
Q Consensus 303 rL~~e~g~~v~~t~P~V~Yre~~~~g~~---------------~----~~~----------------------------- 334 (547)
||+++||+++.+++|.|+||||+++... . .++
T Consensus 461 rL~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~ 540 (687)
T PRK13351 461 RLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEK 540 (687)
T ss_pred HHHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHH
Confidence 9999999999999999999999875310 0 011
Q ss_pred --------CC-CCCCC-C--------------cc---c--------------ccceeecceEEEEEEcCCCcHHHHHHHH
Q 008991 335 --------NP-ASLPS-N--------------PK---K--------------RVTACWEPTVVATIIIPSEYVGSVITLC 373 (547)
Q Consensus 335 --------~p-~~fp~-~--------------~~---~--------------~i~~llEP~~~~~I~vP~e~~G~v~~~l 373 (547)
+| ++||+ + +. + .-..|+||||+++|.+|++|+|+||++|
T Consensus 541 g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l 620 (687)
T PRK13351 541 GIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDL 620 (687)
T ss_pred HHHHHHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHH
Confidence 23 78885 1 00 1 1148999999999999999999999999
Q ss_pred hhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 374 SERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 374 ~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
++|||++++++..+++.+.|+|.+|++|++ +|.++|||+|+|+|+|.++|+||++.
T Consensus 621 ~~rrg~i~~~~~~~~~~~~i~a~vP~~e~~-~~~~~Lrs~T~G~a~~~~~f~~y~~v 676 (687)
T PRK13351 621 SQRRGRIEGTEPRGDGEVLVKAEAPLAELF-GYATRLRSMTKGRGSFTMEFSHFDPV 676 (687)
T ss_pred HhCCcEEeceecCCCcEEEEEEEECHHHhh-ChHHHHHhhcCCceEEEEEeccceeC
Confidence 999999999987665555599999999997 99999999999999999999999984
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=9.1e-67 Score=588.87 Aligned_cols=403 Identities=26% Similarity=0.382 Sum_probs=352.8
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
.++++++|||||||.+|..++.++++.+|++++|+|+++|++.++..+|..+...++|+++|+||+|+.+++.++..+++
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i 151 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQI 151 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999988877777777
Q ss_pred HHhcCCCC------------------------------------------------------------------------
Q 008991 98 KSMFDLDP------------------------------------------------------------------------ 105 (547)
Q Consensus 98 ~~~l~~~~------------------------------------------------------------------------ 105 (547)
.+.++...
T Consensus 152 ~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle 231 (689)
T TIGR00484 152 KQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLE 231 (689)
T ss_pred HHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC
Confidence 66543210
Q ss_pred ----------------------ccceeccccccccccccHHHHHhhCCCCCc-------------------cccCceeEE
Q 008991 106 ----------------------SEALLTSAKTGQGLEHVLPAVIERIPPPRG-------------------IINSSLRML 144 (547)
Q Consensus 106 ----------------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~-------------------~~~~p~~~~ 144 (547)
.|++++||++|.|+..||++|++++|+|.. +++.|+.++
T Consensus 232 ~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 311 (689)
T TIGR00484 232 GEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSAL 311 (689)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEE
Confidence 137788999999999999999999999852 236789999
Q ss_pred EEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCc
Q 008991 145 LLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDT 223 (547)
Q Consensus 145 v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdt 223 (547)
||++++|++.|+++++||+||+|+.||+|++...++.+++.+++.+.+ +..+++++.|||||++. |+ +++.+|||
T Consensus 312 VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~-gl---~~~~~gdt 387 (689)
T TIGR00484 312 AFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAI-GL---KDTTTGDT 387 (689)
T ss_pred EEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEc-CC---CCCCCCCE
Confidence 999999999999999999999999999999988888899999998887 47889999999999986 66 56789999
Q ss_pred ccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHH
Q 008991 224 LYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQR 303 (547)
Q Consensus 224 l~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~er 303 (547)
|++.+.. ..++++..++|+++++++|.++.|.++|.+||++|+++||+|+|..++. +|+.+..| +|+||||++++|
T Consensus 388 l~~~~~~-~~~~~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~e--tge~il~g-~GelHLei~~~~ 463 (689)
T TIGR00484 388 LCDPKID-VILERMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPE--TGQTIIAG-MGELHLDIIVDR 463 (689)
T ss_pred EeCCCCc-cccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCC--CCCEEEEE-eeHHHHHHHHHH
Confidence 9876633 5567777899999999999999999999999999999999999998754 48888888 699999999999
Q ss_pred HHHHhCCeeEEecCceeeEEEeeCCCEE-----------------------------EEeC-------------------
Q 008991 304 LEQEYGAHVISTVPTVPYIFEYSDGSKA-----------------------------EVQN------------------- 335 (547)
Q Consensus 304 L~~e~g~~v~~t~P~V~Yre~~~~g~~~-----------------------------~~~~------------------- 335 (547)
|+++||+++.+++|.|+||||+++.... .+.+
T Consensus 464 L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~ 543 (689)
T TIGR00484 464 MKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGGVIPREYIPAVDKGL 543 (689)
T ss_pred HHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCCcCCHHHHHHHHHHH
Confidence 9999999999999999999998643110 0111
Q ss_pred --------CCCCCC-C--------------c---ccc--------------cceeecceEEEEEEcCCCcHHHHHHHHhh
Q 008991 336 --------PASLPS-N--------------P---KKR--------------VTACWEPTVVATIIIPSEYVGSVITLCSE 375 (547)
Q Consensus 336 --------p~~fp~-~--------------~---~~~--------------i~~llEP~~~~~I~vP~e~~G~v~~~l~~ 375 (547)
.++||+ + + .|+ ...|+|||++++|.+|++|+|+|+++|++
T Consensus 544 ~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~ 623 (689)
T TIGR00484 544 QEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSS 623 (689)
T ss_pred HHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHh
Confidence 267776 1 1 011 14799999999999999999999999999
Q ss_pred cCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 376 RRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 376 rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|||++.+++..+ ++..|++.+|++|++ +|.++|||+|+|+|+|.++|+||++.
T Consensus 624 rrg~i~~~~~~~-~~~~I~a~vP~~e~~-g~~~~Lrs~T~G~~~~~~~f~~y~~v 676 (689)
T TIGR00484 624 RRGIIEGMEARG-NVQKIKAEVPLSEMF-GYATDLRSFTQGRGTYSMEFLHYGEV 676 (689)
T ss_pred cCCeEecccccC-CcEEEEEEeCHHHHh-ChHHHHHHhcCCceEEEEEeccceeC
Confidence 999999998754 589999999999997 99999999999999999999999984
No 13
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-67 Score=535.37 Aligned_cols=442 Identities=24% Similarity=0.360 Sum_probs=394.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+.+++.+|++|||||.||..|+++.++..|+++|+|||.+|+.+||+..+..|.+.+++.|+|+||+|+++++++.+.++
T Consensus 64 ~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~ 143 (603)
T COG1217 64 NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDE 143 (603)
T ss_pred ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHH
Confidence 44669999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhc---CCC----Cccceeccccccc----------cccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEE
Q 008991 97 LKSMF---DLD----PSEALLTSAKTGQ----------GLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICH 159 (547)
Q Consensus 97 i~~~l---~~~----~~~vi~~SAk~g~----------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~ 159 (547)
..++| +.. ..|+++.||+.|. ++..||+.|++++|+|..+.++||+++|....|++|.|++..
T Consensus 144 vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgi 223 (603)
T COG1217 144 VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGI 223 (603)
T ss_pred HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEE
Confidence 88776 211 2479999999985 567799999999999999999999999999999999999999
Q ss_pred EEEecCccccCCEEEEecCC---CeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCC
Q 008991 160 VAVVDGTLRKGDKISSAATG---QAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLP 235 (547)
Q Consensus 160 ~rV~~G~lk~gd~v~~~~~~---~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~ 235 (547)
+||++|++|+|+.|.+...+ ...+|.++.-+.+ ++.+++++.||||+++. |+ .++.+|||+|+++.+ .++|
T Consensus 224 gRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia-G~---~~~~igdTi~d~~~~-~aLp 298 (603)
T COG1217 224 GRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA-GL---EDINIGDTICDPDNP-EALP 298 (603)
T ss_pred EEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc-Cc---ccccccccccCCCCc-cCCC
Confidence 99999999999999998754 3457888766666 78999999999999986 77 788999999999865 8888
Q ss_pred CCCCCcceEEee----eccCCCCc-----hhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHH
Q 008991 236 GFKPAKHMVFSG----LYPADGSD-----FEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQ 306 (547)
Q Consensus 236 ~~~~~~p~v~~~----i~p~~~~d-----~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~ 306 (547)
....-+|.+.+. -.|..+.+ ..++++.|.+..+.|.||+++...++ ..|.+..+|||||.|+.|.|+|
T Consensus 299 ~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~p---d~f~VsGRGELhLsILiE~MRR 375 (603)
T COG1217 299 ALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESP---DAFEVSGRGELHLSILIENMRR 375 (603)
T ss_pred CcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCC---CeEEEeccceeehHHHHHHhhh
Confidence 887767766554 35776643 47899999999999999999998775 5688877999999999999999
Q ss_pred HhCCeeEEecCceeeEEEeeCCCEEEEeCCCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEc
Q 008991 307 EYGAHVISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFI 386 (547)
Q Consensus 307 e~g~~v~~t~P~V~Yre~~~~g~~~~~~~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~ 386 (547)
| |.|+.++.|+|.|||. +|. .+|||..++|.||+||.|.||+.+..|+|++.+|.+.
T Consensus 376 E-GfEl~VsrP~Vi~kei--dG~--------------------~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~ 432 (603)
T COG1217 376 E-GFELQVSRPEVIIKEI--DGV--------------------KCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPD 432 (603)
T ss_pred c-ceEEEecCceEEEEec--CCc--------------------CcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccC
Confidence 9 9999999999999994 665 5899999999999999999999999999999999998
Q ss_pred CCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHH
Q 008991 387 DSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEK 466 (547)
Q Consensus 387 ~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~ 466 (547)
+++|+.++|.+|.+.++ +|.+++.++|+|+|.++..|++|+|..= .+.-..||..| +.+.|.+..+.
T Consensus 433 g~G~~Rlef~iPaRGLI-GfrteFlt~TrG~Gi~n~~F~~Y~p~~g-~i~~R~nGvLi-----------S~~~G~a~~ya 499 (603)
T COG1217 433 GKGRVRLEFVIPARGLI-GFRTEFLTMTRGTGIMNHSFDHYRPVKG-EIGGRHNGVLI-----------SNETGKAVAYA 499 (603)
T ss_pred CCCeEEEEEEccCccee-ccchheeeccccceeeeecccccccccc-cccccccceEE-----------EcCCCcchHhh
Confidence 88999999999999999 8999999999999999999999999754 55556899886 78899999999
Q ss_pred hhccCCCCceeeeeeeee-CCEEEEEecccccchhhhhcc
Q 008991 467 LKKFIDRQMFEITIQAAI-GSKVIARETISAMRKNVLAKC 505 (547)
Q Consensus 467 lk~~i~r~~~~v~~q~~~-~~~~~~~~~i~~~~k~v~~k~ 505 (547)
|.++..|..|+|..+..+ .|.||. +...-.|.+.+|
T Consensus 500 l~~lqdRG~~Fi~pG~~vYeGmiiG---~hsR~nDL~VN~ 536 (603)
T COG1217 500 LFNLQDRGKLFIEPGTKVYEGMIIG---EHSRDNDLTVNV 536 (603)
T ss_pred hhhHHhcCceeecCCCceeeeeEEe---eecCccCceecc
Confidence 999999999999999988 888886 344445666555
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-65 Score=580.07 Aligned_cols=403 Identities=31% Similarity=0.432 Sum_probs=354.2
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
.+++.++|||||||.+|..++.+++..+|++++|+|++++.+.++..+|..+...++|+++|+||+|+..++.....+++
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l 136 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQL 136 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999888877777777
Q ss_pred HHhcCCC-------------------------------------------------------------------------
Q 008991 98 KSMFDLD------------------------------------------------------------------------- 104 (547)
Q Consensus 98 ~~~l~~~------------------------------------------------------------------------- 104 (547)
++.++.+
T Consensus 137 ~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~ 216 (668)
T PRK12740 137 QEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGE 216 (668)
T ss_pred HHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCC
Confidence 7654421
Q ss_pred -------------------CccceeccccccccccccHHHHHhhCCCCCc-----------------cccCceeEEEEee
Q 008991 105 -------------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRG-----------------IINSSLRMLLLDS 148 (547)
Q Consensus 105 -------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~-----------------~~~~p~~~~v~~~ 148 (547)
..|++++||++|.|++.||++|++++|+|.. +++.|+.++||++
T Consensus 217 ~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~ 296 (668)
T PRK12740 217 ELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKT 296 (668)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEe
Confidence 1247899999999999999999999999952 4467899999999
Q ss_pred eccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCC
Q 008991 149 YYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHN 227 (547)
Q Consensus 149 ~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~ 227 (547)
++|++.|+++++||++|+|++||+|++.++++.+++.+++.+++ +..+++++.||||+++. |+ +++.+||||++.
T Consensus 297 ~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~-gl---~~~~~Gdtl~~~ 372 (668)
T PRK12740 297 MDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA-KL---KDAATGDTLCDK 372 (668)
T ss_pred eecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe-cc---CccCCCCEEeCC
Confidence 99999999999999999999999999999888899999998887 57899999999999987 65 568999999876
Q ss_pred CCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHH
Q 008991 228 KSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQE 307 (547)
Q Consensus 228 ~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e 307 (547)
... .+++++..++|+++++++|.+++|+.+|.+||++|+++||+|.+..++. +|+.+..| +|+|||||+++||++|
T Consensus 373 ~~~-~~~~~~~~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~--~ge~~l~g-~GelhLei~~~~L~~~ 448 (668)
T PRK12740 373 GDP-ILLEPMEFPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEE--TGQTILSG-MGELHLDVALERLKRE 448 (668)
T ss_pred CCc-cccCCCCCCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCC--CCCEEEEE-ecHHHHHHHHHHHHHH
Confidence 633 5677888889999999999999999999999999999999999998743 47877777 7999999999999999
Q ss_pred hCCeeEEecCceeeEEEeeCCC-----------------E--EEEe----------------------------------
Q 008991 308 YGAHVISTVPTVPYIFEYSDGS-----------------K--AEVQ---------------------------------- 334 (547)
Q Consensus 308 ~g~~v~~t~P~V~Yre~~~~g~-----------------~--~~~~---------------------------------- 334 (547)
||+++.+++|.|+||||+.+.. . ..++
T Consensus 449 ~~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a 528 (668)
T PRK12740 449 YGVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREA 528 (668)
T ss_pred hCceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999987521 0 0011
Q ss_pred ---CC-CCCCCC-c--------------c---c--------------ccceeecceEEEEEEcCCCcHHHHHHHHhhcCe
Q 008991 335 ---NP-ASLPSN-P--------------K---K--------------RVTACWEPTVVATIIIPSEYVGSVITLCSERRG 378 (547)
Q Consensus 335 ---~p-~~fp~~-~--------------~---~--------------~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG 378 (547)
+| ++||+. . . | ...+++|||++++|.+|++|+|+|+++|++|||
T Consensus 529 ~~~Gpl~g~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg 608 (668)
T PRK12740 529 LEKGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRG 608 (668)
T ss_pred HhcCCcCCCceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCC
Confidence 34 777761 0 0 0 113799999999999999999999999999999
Q ss_pred eEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 379 QQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 379 ~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
++.+++..+++ +.|+|.+|++|++ +|.++|||+|+|+|+|.++|+||++.
T Consensus 609 ~i~~~~~~~~~-~~i~a~~P~~e~~-g~~~~Lr~~T~G~a~~~~~f~~y~~~ 658 (668)
T PRK12740 609 RILGMESRGGG-DVVRAEVPLAEMF-GYATDLRSLTQGRGSFSMEFSHYEEV 658 (668)
T ss_pred eEeccccCCCC-EEEEEEcCHHHhh-chHHHHHHhcCCeEEEEEEecccccC
Confidence 99999876654 8999999999997 99999999999999999999999984
No 15
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=2.5e-65 Score=579.63 Aligned_cols=405 Identities=27% Similarity=0.429 Sum_probs=342.6
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCH----HH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADP----DR 92 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~----~~ 92 (547)
+++++.+||+|||||.||..++.++++.+|++++|||+.+|++.||..+|..+.+.++|.|+|+||+|+..++. +.
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~ 162 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQE 162 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHH
Confidence 55689999999999999999999999999999999999999999999999999889999999999999876542 11
Q ss_pred H-------HHHHHHhc------------CC--CCccceecccccccccc-------------------------------
Q 008991 93 V-------KAQLKSMF------------DL--DPSEALLTSAKTGQGLE------------------------------- 120 (547)
Q Consensus 93 ~-------~~~i~~~l------------~~--~~~~vi~~SAk~g~Gv~------------------------------- 120 (547)
. .+++...+ .. ...+++++||+.+.|+.
T Consensus 163 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~P 242 (731)
T PRK07560 163 MQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAP 242 (731)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhcc
Confidence 1 11111111 01 11347788999998886
Q ss_pred ---ccHHHHHhhCCCCCc-------------------------cccCceeEEEEeeeccccccEEEEEEEecCccccCCE
Q 008991 121 ---HVLPAVIERIPPPRG-------------------------IINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDK 172 (547)
Q Consensus 121 ---~Ll~~l~~~ip~p~~-------------------------~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~ 172 (547)
.|++.|++++|+|.. +++.|+.++||++.+|++.|+++++||++|+|++||.
T Consensus 243 v~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~ 322 (731)
T PRK07560 243 LHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQE 322 (731)
T ss_pred chhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCE
Confidence 799999999999952 2356899999999999999999999999999999999
Q ss_pred EEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCC-CCCcceEEeeecc
Q 008991 173 ISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGF-KPAKHMVFSGLYP 250 (547)
Q Consensus 173 v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~-~~~~p~v~~~i~p 250 (547)
|++.+.+...++.+|+.+.+ +..+++++.|||||++. |+ +++.+||||++.... .+++++ ..++|+++++++|
T Consensus 323 v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~-gl---~~~~~GdtL~~~~~~-~~~~~~~~~p~Pv~~~aI~p 397 (731)
T PRK07560 323 VYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVT-GL---KDARAGETVVSVEDM-TPFESLKHISEPVVTVAIEA 397 (731)
T ss_pred EEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEE-cc---cccccCCEEeCCCcc-ccccccccCCCCeEEEEEEE
Confidence 99999988899999998766 57889999999999986 65 567899999876533 556665 4789999999999
Q ss_pred CCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCE
Q 008991 251 ADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSK 330 (547)
Q Consensus 251 ~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~ 330 (547)
.+++|.++|.+||.+|+++||+|++..++. +|+.+..| +|+||||++++||+++||+++.+++|.|+||||+.+...
T Consensus 398 ~~~~d~~kL~~aL~~L~~eDPsl~v~~~~e--tge~~l~g-~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~ 474 (731)
T PRK07560 398 KNPKDLPKLIEVLRQLAKEDPTLVVKINEE--TGEHLLSG-MGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQ 474 (731)
T ss_pred CCHHHHHHHHHHHHHHHhhCCcEEEEEcCC--CCCeEEEc-CCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCcc
Confidence 999999999999999999999999999754 47877777 799999999999999999999999999999999865321
Q ss_pred -E-------------EEe--------------------------------------------------------------
Q 008991 331 -A-------------EVQ-------------------------------------------------------------- 334 (547)
Q Consensus 331 -~-------------~~~-------------------------------------------------------------- 334 (547)
. .++
T Consensus 475 ~~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~ 554 (731)
T PRK07560 475 VVEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQY 554 (731)
T ss_pred ceEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccC
Confidence 0 000
Q ss_pred ------------------CC-CCCCC-Cc-------------c--------------------cccceeecceEEEEEEc
Q 008991 335 ------------------NP-ASLPS-NP-------------K--------------------KRVTACWEPTVVATIII 361 (547)
Q Consensus 335 ------------------~p-~~fp~-~~-------------~--------------------~~i~~llEP~~~~~I~v 361 (547)
.| ++||+ +. . ..-++||||||+++|.+
T Consensus 555 ~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~ 634 (731)
T PRK07560 555 LNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINV 634 (731)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEe
Confidence 01 45554 10 0 01148999999999999
Q ss_pred CCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceecc
Q 008991 362 PSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQAD 431 (547)
Q Consensus 362 P~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 431 (547)
|++|+|+|+++|++|||++.+++.. +++..|++.+|++|++ +|.++|||+|+|.|+|.++|+||++.+
T Consensus 635 p~~~~g~v~~~L~~rrg~i~~~~~~-~~~~~I~a~vP~~e~~-gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 702 (731)
T PRK07560 635 PQDYMGAVTREIQGRRGKILDMEQE-GDMAIIEAEAPVAEMF-GFAGEIRSATEGRALWSTEFAGFEPVP 702 (731)
T ss_pred cHHHhhHHHHHHHhcCCeeeeeecC-CCcEEEEEEEehHHhc-CCchHHHhhCcCCceEEEEeccceeCC
Confidence 9999999999999999999999863 4678999999999998 999999999999999999999999954
No 16
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=4.7e-63 Score=559.78 Aligned_cols=407 Identities=24% Similarity=0.356 Sum_probs=340.8
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKA 95 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~ 95 (547)
.+++++.++|||||||.+|..++..+++.+|++++|+|+.+|++.+|..+|..+...++|.++|+||+|+..++.....+
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~ 160 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQ 160 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHH
Confidence 45678999999999999999999999999999999999999999999999999988999999999999998766544444
Q ss_pred HHHHhcCC-----------------------C--Cccceecccccccc--------------------------------
Q 008991 96 QLKSMFDL-----------------------D--PSEALLTSAKTGQG-------------------------------- 118 (547)
Q Consensus 96 ~i~~~l~~-----------------------~--~~~vi~~SAk~g~G-------------------------------- 118 (547)
++++.++- . ..++.++|++.+++
T Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (720)
T TIGR00490 161 ELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKS 240 (720)
T ss_pred HHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhh
Confidence 44433311 0 11234556655522
Q ss_pred --ccccHHHHHhhCCCCCc-------------------------cccCceeEEEEeeeccccccEEEEEEEecCccccCC
Q 008991 119 --LEHVLPAVIERIPPPRG-------------------------IINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGD 171 (547)
Q Consensus 119 --v~~Ll~~l~~~ip~p~~-------------------------~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd 171 (547)
+..|++.|++++|+|.. ++++|+.++||+++++++.|+++++||++|+|++||
T Consensus 241 Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~ 320 (720)
T TIGR00490 241 PLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGM 320 (720)
T ss_pred hHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCC
Confidence 24579999999999852 235689999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCC-CCCcceEEeeec
Q 008991 172 KISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGF-KPAKHMVFSGLY 249 (547)
Q Consensus 172 ~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~-~~~~p~v~~~i~ 249 (547)
.|++.+++...+|.+++.+.+ +..+++++.|||++++. |+ +++.+||||++.+....+++++ ..++|+++++++
T Consensus 321 ~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~-gl---~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~ 396 (720)
T TIGR00490 321 EVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVI-GL---KDAVAGETICTTVENITPFESIKHISEPVVTVAIE 396 (720)
T ss_pred EEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEE-Cc---cccccCceeecCCcccccCcccccCCCceEEEEEE
Confidence 999999999999999988765 57889999999999886 65 5678999998776433455655 478999999999
Q ss_pred cCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCC
Q 008991 250 PADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGS 329 (547)
Q Consensus 250 p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~ 329 (547)
|.+++|+++|.++|++|+++||+|+++.++. +|+.+..| +|+||||++++||+++||+++.+++|+|+||||+.+..
T Consensus 397 p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~e--tge~il~g-~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~ 473 (720)
T TIGR00490 397 AKNTKDLPKLIEVLRQVAKEDPTVHVEINEE--TGEHLISG-MGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTS 473 (720)
T ss_pred ECCHHHHHHHHHHHHHHHhhCCeEEEEECCC--CCCeEEEE-ccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccc
Confidence 9999999999999999999999999998754 48988888 79999999999999999999999999999999986431
Q ss_pred E----E-----------------EE----------------------------------------------e--------
Q 008991 330 K----A-----------------EV----------------------------------------------Q-------- 334 (547)
Q Consensus 330 ~----~-----------------~~----------------------------------------------~-------- 334 (547)
. . .+ +
T Consensus 474 ~~~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~ 553 (720)
T TIGR00490 474 PVVEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYL 553 (720)
T ss_pred cceEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCH
Confidence 1 0 00 0
Q ss_pred -----------------CC-CCCCC-Cc---------c----------c--------------ccceeecceEEEEEEcC
Q 008991 335 -----------------NP-ASLPS-NP---------K----------K--------------RVTACWEPTVVATIIIP 362 (547)
Q Consensus 335 -----------------~p-~~fp~-~~---------~----------~--------------~i~~llEP~~~~~I~vP 362 (547)
.| ++||+ |. + | .-++||||||+++|.+|
T Consensus 554 ~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p 633 (720)
T TIGR00490 554 DETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVP 633 (720)
T ss_pred HHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEcc
Confidence 02 56665 10 0 0 11489999999999999
Q ss_pred CCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceecc
Q 008991 363 SEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQAD 431 (547)
Q Consensus 363 ~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 431 (547)
++|+|+|+++|++|||.+.+++.. ++...|++++|++|++ +|.++|||+|+|.|+|.++|+||++.+
T Consensus 634 ~~~~g~v~~~L~~RRg~i~~~~~~-~~~~~I~A~vP~~e~f-gy~~~Lrs~T~G~a~~~~~f~~y~~vp 700 (720)
T TIGR00490 634 QDMMGAATREIQNRRGQILEMKQE-GDMVTIIAKAPVAEMF-GFAGAIRGATSGRCLWSTEHAGFELVP 700 (720)
T ss_pred HHHHhHHHHHHhhCCceeeeeccC-CCcEEEEEEEehHHhc-CCcHHHHhhCCCCceEEEEecccccCC
Confidence 999999999999999999999753 4578999999999997 899999999999999999999999853
No 17
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=2.2e-60 Score=545.21 Aligned_cols=421 Identities=24% Similarity=0.319 Sum_probs=338.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC-------C----
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP-------T---- 87 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~-------~---- 87 (547)
.++.+||||||||.||..++.++++.||+||+||||.+|++.||+.+|+.+...++|+|+++||||++ .
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~ 175 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999997 3
Q ss_pred CCHHHHHHHHH--------HhcCC---CC--ccceeccccc---------------------------------------
Q 008991 88 ADPDRVKAQLK--------SMFDL---DP--SEALLTSAKT--------------------------------------- 115 (547)
Q Consensus 88 ~~~~~~~~~i~--------~~l~~---~~--~~vi~~SAk~--------------------------------------- 115 (547)
+++.++++++. +.++- .| .+++++|+..
T Consensus 176 ~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~ 255 (843)
T PLN00116 176 QTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
T ss_pred HHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCc
Confidence 56677777776 22210 00 0011111100
Q ss_pred --------------------------------------------cc--------------------------cccccHHH
Q 008991 116 --------------------------------------------GQ--------------------------GLEHVLPA 125 (547)
Q Consensus 116 --------------------------------------------g~--------------------------Gv~~Ll~~ 125 (547)
+. |...|++.
T Consensus 256 ~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~ 335 (843)
T PLN00116 256 KWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEM 335 (843)
T ss_pred eEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHH
Confidence 00 12457888
Q ss_pred HHhhCCCCCc-------------------------cccCceeEEEEeeeccccccE-EEEEEEecCccccCCEEEEe---
Q 008991 126 VIERIPPPRG-------------------------IINSSLRMLLLDSYYDEYKGV-ICHVAVVDGTLRKGDKISSA--- 176 (547)
Q Consensus 126 l~~~ip~p~~-------------------------~~~~p~~~~v~~~~~d~~~G~-v~~~rV~~G~lk~gd~v~~~--- 176 (547)
+++++|+|.. +++.|+.++||++..+++.|. ++|+||+||+|+.||.|++.
T Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n 415 (843)
T PLN00116 336 IIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPN 415 (843)
T ss_pred HHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCC
Confidence 8889999842 124689999999999998898 99999999999999999843
Q ss_pred -cCCCe-----eEEEEEEeecC-CcccccccccCcEEEEEecccccccccc-cCcccCCCC-CCCCCCCCCCC-cceEEe
Q 008991 177 -ATGQA-----YEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARI-GDTLYHNKS-IVEPLPGFKPA-KHMVFS 246 (547)
Q Consensus 177 -~~~~~-----~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~-Gdtl~~~~~-~~~~l~~~~~~-~p~v~~ 246 (547)
..++. .++.+++.+++ +..+++++.|||||++. |+ ++..+ ||||++... ...++++++.+ +|++++
T Consensus 416 ~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~-gl---~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~ 491 (843)
T PLN00116 416 YVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV-GL---DQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRV 491 (843)
T ss_pred CCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE-ee---cccccCCceecCCcccCCccccccccCCCceEEE
Confidence 23322 46777888877 57889999999999987 65 44434 999987651 22556677777 999999
Q ss_pred eeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHh--CCeeEEecCceeeEEE
Q 008991 247 GLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEY--GAHVISTVPTVPYIFE 324 (547)
Q Consensus 247 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~--g~~v~~t~P~V~Yre~ 324 (547)
+|+|.+++|.++|.+||++|..+||+|.+..+ ++|+.+..| +||||||++++||+++| |+++.+++|.|+||||
T Consensus 492 aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~---etge~il~g-~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrET 567 (843)
T PLN00116 492 AVQCKNASDLPKLVEGLKRLAKSDPMVQCTIE---ESGEHIIAG-AGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRET 567 (843)
T ss_pred EEEECChhhHHHHHHHHHHHHHhCCCeEEEEc---CCCCEEEEE-ccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEec
Confidence 99999999999999999999999999998653 358999888 69999999999999999 9999999999999999
Q ss_pred eeCCCE-----------E----EE--------------------------------------------------------
Q 008991 325 YSDGSK-----------A----EV-------------------------------------------------------- 333 (547)
Q Consensus 325 ~~~g~~-----------~----~~-------------------------------------------------------- 333 (547)
+.+... . .+
T Consensus 568 I~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~~ 647 (843)
T PLN00116 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMV 647 (843)
T ss_pred ccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceEE
Confidence 854210 0 00
Q ss_pred -e-------------------------C-CCCCCC-Cc-------------------cc--------------ccceeec
Q 008991 334 -Q-------------------------N-PASLPS-NP-------------------KK--------------RVTACWE 352 (547)
Q Consensus 334 -~-------------------------~-p~~fp~-~~-------------------~~--------------~i~~llE 352 (547)
+ . .++||+ +. .+ .-++|||
T Consensus 648 ~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlE 727 (843)
T PLN00116 648 VDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLE 727 (843)
T ss_pred EECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEee
Confidence 0 0 135554 10 00 1148999
Q ss_pred ceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCC-cEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceecc
Q 008991 353 PTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDS-QRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQAD 431 (547)
Q Consensus 353 P~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~-~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 431 (547)
|||+++|.+|++|+|+||++|++|||.+.+++..++ ....|++++|++|++ +|.++|||+|+|.|+|.++|+||++
T Consensus 728 Pi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~-gy~~~LRs~T~G~g~~~~~f~~y~~-- 804 (843)
T PLN00116 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESF-GFSGTLRAATSGQAFPQCVFDHWDM-- 804 (843)
T ss_pred ceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHc-CCCHHHHhhCCCCCeEEEEeceeEE--
Confidence 999999999999999999999999999999987554 348999999999998 8999999999999999999999998
Q ss_pred ceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHh
Q 008991 432 MVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKL 467 (547)
Q Consensus 432 l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~l 467 (547)
++++|.|. .+.+|+++.+.
T Consensus 805 -------v~~dp~~~----------~~~a~~~~~~~ 823 (843)
T PLN00116 805 -------MSSDPLEA----------GSQAAQLVADI 823 (843)
T ss_pred -------CCCCCCCc----------hhHHHHHHHHH
Confidence 77888863 57788888844
No 18
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=6.6e-59 Score=532.03 Aligned_cols=421 Identities=24% Similarity=0.352 Sum_probs=337.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC----C-------
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP----T------- 87 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~----~------- 87 (547)
+++.++|+|||||.||..++..+++.+|+||+|||+.+|++.||..+|..+...++|+|+|+||+|+. +
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCHHHHHHHHHHhcC-----------CCCc--cceecccc----------------------------------------
Q 008991 88 ADPDRVKAQLKSMFD-----------LDPS--EALLTSAK---------------------------------------- 114 (547)
Q Consensus 88 ~~~~~~~~~i~~~l~-----------~~~~--~vi~~SAk---------------------------------------- 114 (547)
+++.++++++...++ +.+. .+...|+.
T Consensus 170 ~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~ 249 (836)
T PTZ00416 170 QNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTK 249 (836)
T ss_pred HHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCC
Confidence 566777777775432 0000 01111110
Q ss_pred ---------------------------------------------cccc--------------------------ccccH
Q 008991 115 ---------------------------------------------TGQG--------------------------LEHVL 123 (547)
Q Consensus 115 ---------------------------------------------~g~G--------------------------v~~Ll 123 (547)
.+.| +..|+
T Consensus 250 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Ll 329 (836)
T PTZ00416 250 KWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLL 329 (836)
T ss_pred EEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHH
Confidence 0001 13477
Q ss_pred HHHHhhCCCCCc-------------------------cccCceeEEEEeeeccccccE-EEEEEEecCccccCCEEEEec
Q 008991 124 PAVIERIPPPRG-------------------------IINSSLRMLLLDSYYDEYKGV-ICHVAVVDGTLRKGDKISSAA 177 (547)
Q Consensus 124 ~~l~~~ip~p~~-------------------------~~~~p~~~~v~~~~~d~~~G~-v~~~rV~~G~lk~gd~v~~~~ 177 (547)
+++++++|+|.. ++++|+.++||++..+++.|+ ++|+||+||+|+.||+|++..
T Consensus 330 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~ 409 (836)
T PTZ00416 330 EMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQG 409 (836)
T ss_pred HHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeC
Confidence 888889999842 124589999999999999999 899999999999999998532
Q ss_pred ----CCCee-----EEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCCCCC-cceEEe
Q 008991 178 ----TGQAY-----EIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPA-KHMVFS 246 (547)
Q Consensus 178 ----~~~~~-----~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~~~~-~p~v~~ 246 (547)
.+... ++.+++.+.+ +..+++++.|||||++. |+++ .-.++| ||++.... .+++++..+ +|++++
T Consensus 410 ~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~-gl~~-~~~~tg-TL~~~~~~-~~l~~i~~~~~Pv~~v 485 (836)
T PTZ00416 410 PNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV-GVDQ-YLVKSG-TITTSETA-HNIRDMKYSVSPVVRV 485 (836)
T ss_pred CCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEE-eccc-ceecce-eecCCCCc-ccccccccCCCCeEEE
Confidence 23333 4888888887 57899999999999987 6632 126899 99876533 455666654 999999
Q ss_pred eeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHh-CCeeEEecCceeeEEEe
Q 008991 247 GLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEY-GAHVISTVPTVPYIFEY 325 (547)
Q Consensus 247 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~-g~~v~~t~P~V~Yre~~ 325 (547)
+++|.+++|.++|.++|++|.++||++.+..+ ++|+.+..| +|+||||++++||+++| |+++.+++|.|+||||+
T Consensus 486 aIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~---etgE~il~g-~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI 561 (836)
T PTZ00416 486 AVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTE---ESGEHIVAG-CGELHVEICLKDLEDDYANIDIIVSDPVVSYRETV 561 (836)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhCCceEEEEc---CCCCeEEEe-CcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEe
Confidence 99999999999999999999999999998663 358988888 69999999999999999 99999999999999998
Q ss_pred eCCCE-------------E--EEe--------------------------------------------------------
Q 008991 326 SDGSK-------------A--EVQ-------------------------------------------------------- 334 (547)
Q Consensus 326 ~~g~~-------------~--~~~-------------------------------------------------------- 334 (547)
.+... . .++
T Consensus 562 ~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~ 641 (836)
T PTZ00416 562 TEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLV 641 (836)
T ss_pred cccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEE
Confidence 64210 0 000
Q ss_pred --------------------------C-CCCCCC-Cc---------c------------------------cccceeecc
Q 008991 335 --------------------------N-PASLPS-NP---------K------------------------KRVTACWEP 353 (547)
Q Consensus 335 --------------------------~-p~~fp~-~~---------~------------------------~~i~~llEP 353 (547)
. .++||+ |. + ..-++||||
T Consensus 642 ~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEP 721 (836)
T PTZ00416 642 DVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEP 721 (836)
T ss_pred ecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEee
Confidence 0 135554 10 0 011379999
Q ss_pred eEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCc-EEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceeccc
Q 008991 354 TVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQ-RAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADM 432 (547)
Q Consensus 354 ~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~-~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~l 432 (547)
||.++|.+|++|+|+|+++|++|||.+++++..+++ ...|++.+|++|++ +|.++|||+|+|.|+|.++|+||++
T Consensus 722 i~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~-gy~~~LRs~T~G~g~~~~~F~~y~~--- 797 (836)
T PTZ00416 722 MFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESF-GFTAALRAATSGQAFPQCVFDHWQV--- 797 (836)
T ss_pred eEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhc-CCCHHHHhhCcCCceEEEEeccEEE---
Confidence 999999999999999999999999999998876543 48999999999998 8999999999999999999999999
Q ss_pred eeeeEeecCcccCcceeeeehHHHHHHHHHHHHHh
Q 008991 433 VKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKL 467 (547)
Q Consensus 433 ~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~l 467 (547)
++++|.|. .+.+|+++.+.
T Consensus 798 ------vp~dp~~~----------~~~a~~~~~~~ 816 (836)
T PTZ00416 798 ------VPGDPLEP----------GSKANEIVLSI 816 (836)
T ss_pred ------CCCCCCCc----------hhHHHHHHHHH
Confidence 67777765 46777887743
No 19
>PF06421 LepA_C: GTP-binding protein LepA C-terminus; InterPro: IPR013842 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family is unknown. This entry represents the C-terminal region of these proteins [].; PDB: 2YWF_A 2YWE_A 2YWG_A 2YWH_A 3CB4_F 3DEG_C.
Probab=100.00 E-value=9.3e-58 Score=382.45 Aligned_cols=108 Identities=69% Similarity=1.086 Sum_probs=54.7
Q ss_pred ecCcccCcceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeeeCCEEEEEecccccchhhhhccccCchhhhhhhHH
Q 008991 439 LNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARETISAMRKNVLAKCYGGDVTRKRKLLE 518 (547)
Q Consensus 439 ~ng~~vd~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~~~~~~~~~~i~~~~k~v~~k~~ggd~~rk~kll~ 518 (547)
|||++|||||+|+|+++|+++||.+|++||++||||||+|+|||+|||||||||||+||||||||||||||+|||+|||+
T Consensus 1 iN~~~VdaLs~ivhr~~a~~~gr~~v~kLK~~IPRq~fev~IQA~ig~kiIARetI~a~RKdV~akcyGGDisRK~KLL~ 80 (108)
T PF06421_consen 1 INGEPVDALSFIVHRSKAQRRGREIVEKLKELIPRQQFEVPIQAAIGGKIIARETIKALRKDVTAKCYGGDISRKKKLLE 80 (108)
T ss_dssp ETTCEEGGGEEEEECCCHHHHHHHHHHHHHHHS-S-SS-EEEEEEETTEEEEEEEE----TT------------------
T ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHhcCHHHhhhhhhHHhCCeeEEecccHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 519 KQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 519 ~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
|||+||||||++|||+||||||+++|++
T Consensus 81 kQK~GKKrmk~iG~V~ipqeaF~~vL~~ 108 (108)
T PF06421_consen 81 KQKEGKKRMKQIGNVEIPQEAFLAVLKI 108 (108)
T ss_dssp ----------------------------
T ss_pred HHHHhHHHHhccCCEeeCHHHHHHHHcC
Confidence 9999999999999999999999999974
No 20
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-56 Score=447.85 Aligned_cols=410 Identities=26% Similarity=0.380 Sum_probs=349.3
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHH
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
+++++++|.+|+||||||+||.-++++.++..||++.|+|++.|+++||...|+++..+++|.+.++||||...++++..
T Consensus 95 v~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~a 174 (753)
T KOG0464|consen 95 VNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENA 174 (753)
T ss_pred eecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcCCCC--------------------------------------------------------------------
Q 008991 94 KAQLKSMFDLDP-------------------------------------------------------------------- 105 (547)
Q Consensus 94 ~~~i~~~l~~~~-------------------------------------------------------------------- 105 (547)
.+.+++.++..+
T Consensus 175 vdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad 254 (753)
T KOG0464|consen 175 VDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLAD 254 (753)
T ss_pred HHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 888888764320
Q ss_pred --------------------------------------ccceeccccccccccccHHHHHhhCCCCCcc-------ccCc
Q 008991 106 --------------------------------------SEALLTSAKTGQGLEHVLPAVIERIPPPRGI-------INSS 140 (547)
Q Consensus 106 --------------------------------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~-------~~~p 140 (547)
.++.+.||.++.||..|++++.-++|+|... ....
T Consensus 255 ~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykdd 334 (753)
T KOG0464|consen 255 LDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDD 334 (753)
T ss_pred ccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHhhhhhh
Confidence 1388999999999999999999999999753 2456
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEeccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEAR 219 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~ 219 (547)
+.++.|++.+|+.+|.++|.|+|+|+++..-.|.+.+......+..+..... +...+.++.||+|...+ |+ +...
T Consensus 335 lcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~-gl---k~ta 410 (753)
T KOG0464|consen 335 LCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTA-GL---KHTA 410 (753)
T ss_pred HHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEe-cc---eeec
Confidence 7899999999999999999999999999999999988777777776655444 45678999999997664 77 6678
Q ss_pred ccCcccCCCC-----------------------CCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEE
Q 008991 220 IGDTLYHNKS-----------------------IVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVT 276 (547)
Q Consensus 220 ~Gdtl~~~~~-----------------------~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~ 276 (547)
+|||+...+. ....+.+.+.|.|++||.|+|...++..++..||+-|..||||+.+.
T Consensus 411 tgdtivaskasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir 490 (753)
T KOG0464|consen 411 TGDTIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIR 490 (753)
T ss_pred cCCeEEecchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEE
Confidence 9999965421 01245678899999999999999999999999999999999999999
Q ss_pred ecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeC------------CCEE-------------
Q 008991 277 KETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSD------------GSKA------------- 331 (547)
Q Consensus 277 ~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~------------g~~~------------- 331 (547)
-+.. .|+++.|| +|+||+|++.+|++||||+++-+++-+|.|||++.+ |...
T Consensus 491 ~d~d--sgqtil~~-~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~ 567 (753)
T KOG0464|consen 491 FDPD--SGQTILCG-MGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEE 567 (753)
T ss_pred ecCC--CCceEEec-cchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeecc
Confidence 9865 49999999 699999999999999999999999999999998752 1100
Q ss_pred ----------EEe---------------------------CC-CCCCCC-c----------cccc---------------
Q 008991 332 ----------EVQ---------------------------NP-ASLPSN-P----------KKRV--------------- 347 (547)
Q Consensus 332 ----------~~~---------------------------~p-~~fp~~-~----------~~~i--------------- 347 (547)
+++ .| +++|.. . ..++
T Consensus 568 tqa~ip~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqe 647 (753)
T KOG0464|consen 568 TQAHIPFKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQE 647 (753)
T ss_pred ccccccceeEEeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHH
Confidence 110 12 566651 0 0111
Q ss_pred ------ceeecceEEEEEEcCC-CcHHHHHHHHhhcCeeEeeeeEcCCcEE-EEEEEechHhHHHHHHHHhcccCcCeEE
Q 008991 348 ------TACWEPTVVATIIIPS-EYVGSVITLCSERRGQQLEYSFIDSQRA-FMKYCLPLREIVVDFYNELKSLTSGYAS 419 (547)
Q Consensus 348 ------~~llEP~~~~~I~vP~-e~~G~v~~~l~~rRG~~~~~~~~~~~~~-~i~~~iPl~ei~~~f~~~Lks~T~G~as 419 (547)
..++||.|+++|.+-. +|+..|+.++.+|||.+.+.+...++.+ .|-+.+||+|+. +|...||++|+|+|.
T Consensus 648 alkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~-~~s~~lrtltsg~a~ 726 (753)
T KOG0464|consen 648 ALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIE-GLSKTLRTLTSGFAD 726 (753)
T ss_pred HHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhh-cHHHHHHHHhcccce
Confidence 2699999999999977 9999999999999999998876554433 588999999996 899999999999999
Q ss_pred EEeEeccceecc
Q 008991 420 FDYEDSEYQQAD 431 (547)
Q Consensus 420 ~~~~~~~y~~~~ 431 (547)
|..+|.+|+.++
T Consensus 727 ~ale~~~yqamn 738 (753)
T KOG0464|consen 727 FALEFRGYQAMN 738 (753)
T ss_pred EEEEecchhhcC
Confidence 999999999854
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=4.2e-48 Score=421.55 Aligned_cols=300 Identities=23% Similarity=0.315 Sum_probs=264.7
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+.+++.+|+||||||.||..++.++++.+|++|+|+|+++|++.+|..+|..+...++|+++++||+|+.++++.++.++
T Consensus 75 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~ 154 (526)
T PRK00741 75 PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDE 154 (526)
T ss_pred EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999888777777
Q ss_pred HHHhcCCC------------------------------------------------------------------------
Q 008991 97 LKSMFDLD------------------------------------------------------------------------ 104 (547)
Q Consensus 97 i~~~l~~~------------------------------------------------------------------------ 104 (547)
+++.++..
T Consensus 155 i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~ 234 (526)
T PRK00741 155 IEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGA 234 (526)
T ss_pred HHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhc
Confidence 76655421
Q ss_pred -------------CccceeccccccccccccHHHHHhhCCCCCcc---------ccCceeEEEEeeec---cccccEEEE
Q 008991 105 -------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------INSSLRMLLLDSYY---DEYKGVICH 159 (547)
Q Consensus 105 -------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~---------~~~p~~~~v~~~~~---d~~~G~v~~ 159 (547)
..|++++||++|.||..||+++++++|+|... .+.+|.++||++.. ++++|+++|
T Consensus 235 ~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlaf 314 (526)
T PRK00741 235 SNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAF 314 (526)
T ss_pred ccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEE
Confidence 02489999999999999999999999999642 24679999999984 579999999
Q ss_pred EEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCCC
Q 008991 160 VAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFK 238 (547)
Q Consensus 160 ~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~~ 238 (547)
+||+||+++.|++|++.++++.+++.++..+.+ ++.+++++.||||+.+. + +.++++||||+..+ + ..+++++
T Consensus 315 vRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~-~---l~~~~~GDTL~~~~-~-~~~~~i~ 388 (526)
T PRK00741 315 VRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH-N---HGTIQIGDTFTQGE-K-LKFTGIP 388 (526)
T ss_pred EEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE-C---CCCCccCCCccCCC-c-cccCCCC
Confidence 999999999999999999999999999877766 68899999999999876 4 47889999999865 2 5567778
Q ss_pred CCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCc
Q 008991 239 PAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPT 318 (547)
Q Consensus 239 ~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~ 318 (547)
.+.|+++++++|.++.|+++|.+||++|++|| ++++.++.. +|+ +++|++|+|||||+++||++|||+++.+++|+
T Consensus 389 ~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~~~~--t~e-~il~g~G~lhleV~~~RL~~ey~v~v~~~~~~ 464 (526)
T PRK00741 389 NFAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFRPLD--NND-LILGAVGQLQFEVVAHRLKNEYNVEAIYEPVG 464 (526)
T ss_pred CCCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEECCC--CCC-EEEEEEeHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 88999999999999999999999999999999 499988765 455 56666899999999999999999999999999
Q ss_pred eeeEEEee
Q 008991 319 VPYIFEYS 326 (547)
Q Consensus 319 V~Yre~~~ 326 (547)
|++---+.
T Consensus 465 v~~~rw~~ 472 (526)
T PRK00741 465 VATARWVE 472 (526)
T ss_pred ccEEEEEe
Confidence 99876543
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=4.7e-47 Score=413.45 Aligned_cols=297 Identities=23% Similarity=0.330 Sum_probs=262.6
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKA 95 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~ 95 (547)
++.+++.++|||||||.+|..++.++++.+|++|+|+|+++|++.+|..+|..+...++|+++|+||+|+.+++.+++.+
T Consensus 75 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~ 154 (527)
T TIGR00503 75 FPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLD 154 (527)
T ss_pred EeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHH
Confidence 35567999999999999999999999999999999999999999999999999988999999999999999888888777
Q ss_pred HHHHhcCCCC----------------------------------------------------------------------
Q 008991 96 QLKSMFDLDP---------------------------------------------------------------------- 105 (547)
Q Consensus 96 ~i~~~l~~~~---------------------------------------------------------------------- 105 (547)
++++.++..+
T Consensus 155 ~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~ 234 (527)
T TIGR00503 155 EVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEG 234 (527)
T ss_pred HHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhh
Confidence 7777654310
Q ss_pred ---------------ccceeccccccccccccHHHHHhhCCCCCcc---------ccCceeEEEEeeec--c-ccccEEE
Q 008991 106 ---------------SEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------INSSLRMLLLDSYY--D-EYKGVIC 158 (547)
Q Consensus 106 ---------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~---------~~~p~~~~v~~~~~--d-~~~G~v~ 158 (547)
.|++++||.++.||+.||+.+++++|+|... .+++|.++||++.. | +++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~gria 314 (527)
T TIGR00503 235 ASNEFDLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVA 314 (527)
T ss_pred hccccCHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEE
Confidence 1358999999999999999999999999642 24689999999987 8 5999999
Q ss_pred EEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCC
Q 008991 159 HVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGF 237 (547)
Q Consensus 159 ~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~ 237 (547)
|+||+||+++.|++|++.++|+++++.++..+.+ ++.+++++.||||+.+. + +.++++||||++.+ + ..++++
T Consensus 315 f~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~-~---~~~~~~GDtl~~~~-~-~~~~~i 388 (527)
T TIGR00503 315 FMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH-N---HGTIQIGDTFTQGE-K-IKFTGI 388 (527)
T ss_pred EEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE-C---CCCcccCCEecCCC-c-eeecCC
Confidence 9999999999999999999999999999987776 67899999999999876 4 47889999999854 2 456677
Q ss_pred CCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecC
Q 008991 238 KPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVP 317 (547)
Q Consensus 238 ~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P 317 (547)
+.+.|+++++++|.++.|+++|.+||++|++||| +++.++.. +++ +++|++|+|||||+++||++|||+++.+++|
T Consensus 389 ~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~--t~e-~il~g~GelhleV~~~RL~~ey~v~v~~~~~ 464 (527)
T TIGR00503 389 PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLD--NND-LIVGAVGVLQFDVVVYRLKEEYNVEARYEPV 464 (527)
T ss_pred CCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCC--CCC-EEEEEEeHHHHHHHHHHHHHHhCCeEEEeCC
Confidence 7889999999999999999999999999999998 89988754 455 5566689999999999999999999999999
Q ss_pred ceeeE
Q 008991 318 TVPYI 322 (547)
Q Consensus 318 ~V~Yr 322 (547)
+|+.-
T Consensus 465 ~v~~~ 469 (527)
T TIGR00503 465 NVATA 469 (527)
T ss_pred CceEE
Confidence 99854
No 23
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-44 Score=366.63 Aligned_cols=418 Identities=24% Similarity=0.313 Sum_probs=317.7
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC----CCCHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP----TADPD 91 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~----~~~~~ 91 (547)
-++.++.+||||.|||+||+.|+..+|+..|||++|||..+|+..||...+++|....+.-++++||+|+. .-..+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 36678999999999999999999999999999999999999999999999999999999999999999973 22334
Q ss_pred HHHHHHHHhc----------CCC--------Cc--cceec----------------------------------------
Q 008991 92 RVKAQLKSMF----------DLD--------PS--EALLT---------------------------------------- 111 (547)
Q Consensus 92 ~~~~~i~~~l----------~~~--------~~--~vi~~---------------------------------------- 111 (547)
+..+.++... +.. +. .+-++
T Consensus 173 eLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ 252 (842)
T KOG0469|consen 173 ELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNP 252 (842)
T ss_pred HHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCc
Confidence 4333333221 000 00 00111
Q ss_pred ---------------------------------------------------------cccccccc--------------c
Q 008991 112 ---------------------------------------------------------SAKTGQGL--------------E 120 (547)
Q Consensus 112 ---------------------------------------------------------SAk~g~Gv--------------~ 120 (547)
--++++|- +
T Consensus 253 ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAad 332 (842)
T KOG0469|consen 253 KTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAAD 332 (842)
T ss_pred cCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHH
Confidence 11222221 2
Q ss_pred ccHHHHHhhCCCCC-------------------------ccccCceeEEEEeeecccccc-EEEEEEEecCccccCCEEE
Q 008991 121 HVLPAVIERIPPPR-------------------------GIINSSLRMLLLDSYYDEYKG-VICHVAVVDGTLRKGDKIS 174 (547)
Q Consensus 121 ~Ll~~l~~~ip~p~-------------------------~~~~~p~~~~v~~~~~d~~~G-~v~~~rV~~G~lk~gd~v~ 174 (547)
.+++.|.-++|+|. +++++|+..+|.+..-..-.| ..+|+|||+|.+..|.+++
T Consensus 333 allemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvR 412 (842)
T KOG0469|consen 333 ALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVR 412 (842)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEE
Confidence 26777777888874 257899999999887655455 5789999999999999999
Q ss_pred EecCC----CeeE-----EEE-EEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCCC-CCcce
Q 008991 175 SAATG----QAYE-----IVD-VGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFK-PAKHM 243 (547)
Q Consensus 175 ~~~~~----~~~~-----v~~-i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~~-~~~p~ 243 (547)
+..-+ ++.. |.. +.+|...-++++...+|+|+.++ |+.. -+..+-|||..+.+ ..+...+ ...|+
T Consensus 413 iqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv-GvDq--fLvKtGTiTt~e~A-HNmrvMKFSVSPV 488 (842)
T KOG0469|consen 413 IQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV-GVDQ--FLVKTGTITTSEAA-HNMRVMKFSVSPV 488 (842)
T ss_pred EeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe-ehhH--hhhccCceeehhhh-ccceEEEeeccce
Confidence 97533 2211 111 12333345788899999988877 6522 22334477776532 3333333 35799
Q ss_pred EEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHh-CCeeEEecCceeeE
Q 008991 244 VFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEY-GAHVISTVPTVPYI 322 (547)
Q Consensus 244 v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~-g~~v~~t~P~V~Yr 322 (547)
|.+++++.++.|..+|.+.|.||+..||.+....++| |+.+..| -|+|||||++..|++.| ++.+..++|-|.||
T Consensus 489 V~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~es---GehiiAg-aGeLHLEICLkDLeedhA~iPlk~sdPvVsYr 564 (842)
T KOG0469|consen 489 VRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEES---GEHIIAG-AGELHLEICLKDLEEDHACIPLKKSDPVVSYR 564 (842)
T ss_pred EEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccC---CceEEec-cchhhHHHHHhhHhhcccCCceecCCCeeeee
Confidence 9999999999999999999999999999999999887 7999999 59999999999999999 89999999999999
Q ss_pred EEeeCCCEE--------------E------------E----e------------------------------CCCCCCC-
Q 008991 323 FEYSDGSKA--------------E------------V----Q------------------------------NPASLPS- 341 (547)
Q Consensus 323 e~~~~g~~~--------------~------------~----~------------------------------~p~~fp~- 341 (547)
|++...... + + . .|.+-+.
T Consensus 565 Etvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~N 644 (842)
T KOG0469|consen 565 ETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPN 644 (842)
T ss_pred cccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCc
Confidence 998632100 0 0 0 0111110
Q ss_pred ---C-------------c----------------------cc---------------------------------cccee
Q 008991 342 ---N-------------P----------------------KK---------------------------------RVTAC 350 (547)
Q Consensus 342 ---~-------------~----------------------~~---------------------------------~i~~l 350 (547)
| + .| .-+.+
T Consensus 645 ll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l 724 (842)
T KOG0469|consen 645 LLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPIL 724 (842)
T ss_pred EEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCcee
Confidence 0 0 00 01379
Q ss_pred ecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCC-cEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEecccee
Q 008991 351 WEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDS-QRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQ 429 (547)
Q Consensus 351 lEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~-~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~ 429 (547)
+||++.++|.||+.++|.|.+.|.++||++.+.+...+ ...++++++|+.|.+ +|..+|||.|.|+|.-.+.|+||+.
T Consensus 725 ~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESF-gFt~dLrs~t~GqAfpq~vFdHws~ 803 (842)
T KOG0469|consen 725 QEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESF-GFTADLRSNTGGQAFPQMVFDHWSI 803 (842)
T ss_pred cCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeeccccc-ccchhhhcccCCccccceeeecccc
Confidence 99999999999999999999999999999998887654 578999999999998 8999999999999999999999998
Q ss_pred ccceeeeEeecCcccCcceeee
Q 008991 430 ADMVKLDILLNGQPVDAMATIV 451 (547)
Q Consensus 430 ~~l~k~~i~~ng~~vd~ls~i~ 451 (547)
+.|+|.|+-|.-.
T Consensus 804 ---------lpgdp~dp~sk~~ 816 (842)
T KOG0469|consen 804 ---------LPGDPLDPTSKPG 816 (842)
T ss_pred ---------CCCCCCCCCccch
Confidence 8999999988543
No 24
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-40 Score=339.09 Aligned_cols=294 Identities=24% Similarity=0.401 Sum_probs=258.1
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+..++.+||+|||||.||+..+.|.|.++|.|++||||..|+++||+..+..++.+++|++-++||+|+...++-+++++
T Consensus 77 ~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdE 156 (528)
T COG4108 77 DYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDE 156 (528)
T ss_pred ccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC-----------------------------------------------------------------------
Q 008991 97 LKSMFDLDP----------------------------------------------------------------------- 105 (547)
Q Consensus 97 i~~~l~~~~----------------------------------------------------------------------- 105 (547)
+++.+++.+
T Consensus 157 iE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a 236 (528)
T COG4108 157 IEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGA 236 (528)
T ss_pred HHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhh
Confidence 999886641
Q ss_pred --------------ccceeccccccccccccHHHHHhhCCCCCc---------cccCceeEEEEeeecc---ccccEEEE
Q 008991 106 --------------SEALLTSAKTGQGLEHVLPAVIERIPPPRG---------IINSSLRMLLLDSYYD---EYKGVICH 159 (547)
Q Consensus 106 --------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~---------~~~~p~~~~v~~~~~d---~~~G~v~~ 159 (547)
.|+++.||.++.||+.+|+.++++.|+|.. ..+..|.++||++..+ +++.+|++
T Consensus 237 ~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAF 316 (528)
T COG4108 237 GNEFDLEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAF 316 (528)
T ss_pred ccccCHHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeE
Confidence 149999999999999999999999999864 2345699999999863 68999999
Q ss_pred EEEecCccccCCEEEEecCCCeeEEEEEEeec-CCcccccccccCcEEEEEecccccccccccCcccCCCC-CCCCCCCC
Q 008991 160 VAVVDGTLRKGDKISSAATGQAYEIVDVGIMH-PELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKS-IVEPLPGF 237 (547)
Q Consensus 160 ~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~-~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~-~~~~l~~~ 237 (547)
+||.||....|+++...++|+..++.....+. .++..+++|.||||+ |+-+...+++|||++..+. ...++|.|
T Consensus 317 mRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDII----Gl~nhG~~~IGDT~t~Ge~l~f~giP~F 392 (528)
T COG4108 317 MRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDII----GLHNHGTIQIGDTFTEGEKLKFTGIPNF 392 (528)
T ss_pred EEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeE----eccCCCceeecceeecCceeeecCCCCC
Confidence 99999999999999999999999998865544 478889999999987 5556788999999998762 22455555
Q ss_pred CCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecC
Q 008991 238 KPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVP 317 (547)
Q Consensus 238 ~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P 317 (547)
.|-+|..+...++.++++|+++|+.|++|-..--+.+.. +..+.+|..|.||.||+++||+.|||+++++.+-
T Consensus 393 ---aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~----~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~ 465 (528)
T COG4108 393 ---APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLD----GNDLILGAVGQLQFEVVQARLKNEYNVEAVFEPV 465 (528)
T ss_pred ---CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCC----CCCceEEeeeeeehHHHHHHHHhhhCCeEEEeec
Confidence 588999999999999999999999999998766566654 3567889999999999999999999999999876
Q ss_pred ceee
Q 008991 318 TVPY 321 (547)
Q Consensus 318 ~V~Y 321 (547)
.+..
T Consensus 466 ~~~~ 469 (528)
T COG4108 466 NFST 469 (528)
T ss_pred cceE
Confidence 5443
No 25
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-36 Score=319.56 Aligned_cols=435 Identities=23% Similarity=0.304 Sum_probs=328.8
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC-------
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT------- 87 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~------- 87 (547)
+.+++.|.+|++|||||++|..|+..+++.+|++++|||+.+|++.+|...+..+.+.++|+++|+||+|+.-
T Consensus 191 D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP 270 (971)
T KOG0468|consen 191 DSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPP 270 (971)
T ss_pred cCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCCh
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999631
Q ss_pred CCH----HHHHHHHHHhc---CCC------C--ccceecc----------------------------------------
Q 008991 88 ADP----DRVKAQLKSMF---DLD------P--SEALLTS---------------------------------------- 112 (547)
Q Consensus 88 ~~~----~~~~~~i~~~l---~~~------~--~~vi~~S---------------------------------------- 112 (547)
.+. ..+.+++...+ .-+ + .++++.|
T Consensus 271 ~DAY~KLrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ 350 (971)
T KOG0468|consen 271 MDAYYKLRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHS 350 (971)
T ss_pred HHHHHHHHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccc
Confidence 111 11222222111 000 0 0011111
Q ss_pred --------cccccc----------------------------------------------ccc---------------cH
Q 008991 113 --------AKTGQG----------------------------------------------LEH---------------VL 123 (547)
Q Consensus 113 --------Ak~g~G----------------------------------------------v~~---------------Ll 123 (547)
...|.+ +.. +.
T Consensus 351 ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfv 430 (971)
T KOG0468|consen 351 KTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFV 430 (971)
T ss_pred cccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhh
Confidence 111111 111 34
Q ss_pred HHHHhhCCCCCc-------------------------cccCceeEEEEeeec-cccccEEEEEEEecCccccCCEEEEec
Q 008991 124 PAVIERIPPPRG-------------------------IINSSLRMLLLDSYY-DEYKGVICHVAVVDGTLRKGDKISSAA 177 (547)
Q Consensus 124 ~~l~~~ip~p~~-------------------------~~~~p~~~~v~~~~~-d~~~G~v~~~rV~~G~lk~gd~v~~~~ 177 (547)
+.+++++|+|.. ..+.|+...+.+.+. |...-..+++||+||+++.|+.|....
T Consensus 431 d~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlg 510 (971)
T KOG0468|consen 431 DMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLG 510 (971)
T ss_pred HhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEee
Confidence 666778877643 245677777766663 444456789999999999999999876
Q ss_pred CC---------CeeEEEEEEeecCC-cccccccccCcEEEEEecccccccccccCcccCCCC--CCCCCCCC-CCCcceE
Q 008991 178 TG---------QAYEIVDVGIMHPE-LTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKS--IVEPLPGF-KPAKHMV 244 (547)
Q Consensus 178 ~~---------~~~~v~~i~~~~~~-~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~--~~~~l~~~-~~~~p~v 244 (547)
.+ ...+|.++++.... ..+++.+.+|+++.|- |+. ..+....|+++.+. ...-++++ ..+.|++
T Consensus 511 eny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~-Gid--q~i~KtaTi~~~~~ked~yiFrpl~~~t~~Vv 587 (971)
T KOG0468|consen 511 ENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIE-GVD--QSIVKTATIKSLEYKEDVYIFRPLKFNTEPVV 587 (971)
T ss_pred ccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEe-ccc--hHHhhhhheeccccccceeeccchhcCCcceE
Confidence 44 23467778877775 6789999999998774 652 33444567776652 12233343 3578999
Q ss_pred EeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHh-CCeeEEecCceeeEE
Q 008991 245 FSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEY-GAHVISTVPTVPYIF 323 (547)
Q Consensus 245 ~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~-g~~v~~t~P~V~Yre 323 (547)
..+++|.++++..||.++|.|.+..-|.+...-|+| |+..+.| .|||-|+.+...||.-| .+++.++.|-|.|.|
T Consensus 588 KiaveP~nPsELPKmldgLrKinKsYPl~~tkVEES---GEHvilG-tGElYmDcvlyDLR~~yseieikvaDPvv~F~E 663 (971)
T KOG0468|consen 588 KVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEES---GEHVILG-TGELYMDCVLYDLRKSYSEIEIKVADPVVRFCE 663 (971)
T ss_pred EEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhc---CceEEec-CchhhHHHHHHHHHHHHhhhceeecCceeEEEE
Confidence 999999999999999999999999999999888877 8999999 69999999999999999 799999999999999
Q ss_pred EeeCCC-------------EE--------------------EEe-C---------------------CCCC-CC------
Q 008991 324 EYSDGS-------------KA--------------------EVQ-N---------------------PASL-PS------ 341 (547)
Q Consensus 324 ~~~~g~-------------~~--------------------~~~-~---------------------p~~f-p~------ 341 (547)
|.-+.. .. .++ | -|.| |+
T Consensus 664 t~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNi 743 (971)
T KOG0468|consen 664 TVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNI 743 (971)
T ss_pred eeecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCce
Confidence 975411 00 010 0 0112 11
Q ss_pred ---C--------------------------------------ccc---------------------------------cc
Q 008991 342 ---N--------------------------------------PKK---------------------------------RV 347 (547)
Q Consensus 342 ---~--------------------------------------~~~---------------------------------~i 347 (547)
| +.| ++
T Consensus 744 L~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~At 823 (971)
T KOG0468|consen 744 LLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMAT 823 (971)
T ss_pred eecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhc
Confidence 0 001 12
Q ss_pred ceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCC-cEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEecc
Q 008991 348 TACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDS-QRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSE 426 (547)
Q Consensus 348 ~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~-~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~ 426 (547)
++++||++.++|.+|.+.+..|.+++++|||++..-....+ ....+++.+|+-|.+ +|.++||--|+|+|....-|+|
T Consensus 824 PrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSf-GFETDLR~hTqGqa~C~~vF~H 902 (971)
T KOG0468|consen 824 PRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESF-GFETDLRVHTQGQAFCLSVFDH 902 (971)
T ss_pred hhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeeccccccc-CcccceeeeccchhHHHHhhhh
Confidence 47999999999999999999999999999999987666543 467899999999998 8999999999999999999999
Q ss_pred ceeccceeeeEeecCcccCcceeeeehH--HHHHHHHHHHHH
Q 008991 427 YQQADMVKLDILLNGQPVDAMATIVHNL--KAQRVGRELVEK 466 (547)
Q Consensus 427 y~~~~l~k~~i~~ng~~vd~ls~i~~~~--~a~~~~~~~~~~ 466 (547)
|+. ++|+|.|--.+|-+++ .+...||.+.-|
T Consensus 903 W~~---------VPGDpLDKsi~i~~Lep~p~~~LaReFmiK 935 (971)
T KOG0468|consen 903 WRI---------VPGDPLDKSIAIRPLEPAPIRHLAREFMIK 935 (971)
T ss_pred ccc---------CCCCccccccccccCCCCCcchhHHHHHHH
Confidence 998 9999998877777666 566778877654
No 26
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-34 Score=308.59 Aligned_cols=435 Identities=23% Similarity=0.288 Sum_probs=319.4
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC----CCCHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP----TADPDRV 93 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~----~~~~~~~ 93 (547)
.++|.+||||+|||.||..++..+.+-||+|+++||+.+|+..||...++++...++..++|+||||+. ...+.+.
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea 148 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEA 148 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999999952 2223222
Q ss_pred -------HHHHHHhcC------------------------CCCccceeccccccccccc---------------------
Q 008991 94 -------KAQLKSMFD------------------------LDPSEALLTSAKTGQGLEH--------------------- 121 (547)
Q Consensus 94 -------~~~i~~~l~------------------------~~~~~vi~~SAk~g~Gv~~--------------------- 121 (547)
.+++....+ ....+++++||..|.|+.-
T Consensus 149 ~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~ 228 (887)
T KOG0467|consen 149 YEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKF 228 (887)
T ss_pred HHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhh
Confidence 222221111 1112355556555543210
Q ss_pred ---------------------------------------------------------------------cHHHHH-hhCC
Q 008991 122 ---------------------------------------------------------------------VLPAVI-ERIP 131 (547)
Q Consensus 122 ---------------------------------------------------------------------Ll~~l~-~~ip 131 (547)
+++++. +++|
T Consensus 229 lwgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLP 308 (887)
T KOG0467|consen 229 LWGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLP 308 (887)
T ss_pred hccceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcc
Confidence 122222 2232
Q ss_pred --------------CCC----------------------------ccccCceeEEEEeeec-----cccccEEEEEEEec
Q 008991 132 --------------PPR----------------------------GIINSSLRMLLLDSYY-----DEYKGVICHVAVVD 164 (547)
Q Consensus 132 --------------~p~----------------------------~~~~~p~~~~v~~~~~-----d~~~G~v~~~rV~~ 164 (547)
.|. ...++|...+|.+... ++....++++||++
T Consensus 309 ls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~s 388 (887)
T KOG0467|consen 309 LSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFS 388 (887)
T ss_pred cccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeecc
Confidence 221 1234566666665553 34333678999999
Q ss_pred CccccCCEEEEecC-------CCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCC
Q 008991 165 GTLRKGDKISSAAT-------GQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPG 236 (547)
Q Consensus 165 G~lk~gd~v~~~~~-------~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~ 236 (547)
|+++.||.++.... -...++.+++.+.+ +..+.+++.+|+++.+. | . .-+-..-|+++..+....++.
T Consensus 389 gTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~-g-~--~~vlks~TL~s~~~~~p~~~~ 464 (887)
T KOG0467|consen 389 GTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIG-G-A--GIVLKSATLCSKVPCGPNLVV 464 (887)
T ss_pred CceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEec-c-c--ceEeccceecccCCCcceeee
Confidence 99999999998653 13346777887777 46789999999999885 3 1 222334577776533222332
Q ss_pred CCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHh-CCeeEEe
Q 008991 237 FKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEY-GAHVIST 315 (547)
Q Consensus 237 ~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~-g~~v~~t 315 (547)
-....|.+.++++|.++.+.++|.+.|.-|..-||++.+.-+.. |+...+- .|++|++-+...|.. | ++++.++
T Consensus 465 ~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~---gEhvl~~-aGevhlerc~kDL~e-fa~i~i~vS 539 (887)
T KOG0467|consen 465 NFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEEN---GEHVLVT-AGEVHLERCLKDLKE-FAKIEISVS 539 (887)
T ss_pred eeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhc---cceeeee-ccHHHHHHHHHHHhh-hhceEEEec
Confidence 34568999999999999999999999999999999999877753 6665555 599999999999999 6 8999999
Q ss_pred cCceeeEEEeeCCCE--------------------E--------------------------------------------
Q 008991 316 VPTVPYIFEYSDGSK--------------------A-------------------------------------------- 331 (547)
Q Consensus 316 ~P~V~Yre~~~~g~~--------------------~-------------------------------------------- 331 (547)
+|.|+|+||+.++.. .
T Consensus 540 eP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~ 619 (887)
T KOG0467|consen 540 EPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFE 619 (887)
T ss_pred CCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhcccccccccccccccccc
Confidence 999999999822100 0
Q ss_pred -------------E----------------------------EeCCCCCC------------------------------
Q 008991 332 -------------E----------------------------VQNPASLP------------------------------ 340 (547)
Q Consensus 332 -------------~----------------------------~~~p~~fp------------------------------ 340 (547)
. +++-+++.
T Consensus 620 e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPl 699 (887)
T KOG0467|consen 620 ENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPL 699 (887)
T ss_pred ccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcc
Confidence 0 00000010
Q ss_pred ----CC-------c----c------------------------cccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEe
Q 008991 341 ----SN-------P----K------------------------KRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQL 381 (547)
Q Consensus 341 ----~~-------~----~------------------------~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~ 381 (547)
.+ + . ..-.++..||+.|+|.+-.|++|++...+++|+|+++
T Consensus 700 c~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVL 779 (887)
T KOG0467|consen 700 CNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVL 779 (887)
T ss_pred cccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhh
Confidence 00 0 0 0013799999999999999999999999999999999
Q ss_pred eeeEcC-CcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHH
Q 008991 382 EYSFID-SQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVG 460 (547)
Q Consensus 382 ~~~~~~-~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~ 460 (547)
+-++.+ .+...+++.+|+.|.+ +|.+++|..|+|-|+....|+||+-.|....++----+.+..|.--+.+. ++|
T Consensus 780 sEem~EgT~~F~V~aliPVvESF-gFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~---N~A 855 (887)
T KOG0467|consen 780 SEEMKEGTGFFIVTALIPVVESF-GFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSE---NIA 855 (887)
T ss_pred hhhhhCCCCcEEEEEEeeeeccc-cHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccch---hHH
Confidence 877554 4689999999999998 89999999999999999999999999988888887778887777766655 444
Q ss_pred HHHHH
Q 008991 461 RELVE 465 (547)
Q Consensus 461 ~~~~~ 465 (547)
|....
T Consensus 856 rkYMd 860 (887)
T KOG0467|consen 856 RKYMD 860 (887)
T ss_pred HHHHH
Confidence 44443
No 27
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.96 E-value=6.4e-28 Score=271.79 Aligned_cols=374 Identities=23% Similarity=0.305 Sum_probs=259.3
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
.++.++|||||||.+|..++.++++.+|++|||||+++|++.||.++|..+...++|+|+++||+|+++++.+.+.+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~ 414 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELS 414 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999998888777766665
Q ss_pred HhcCC------CCccceeccccccccccccHHHHHhhC--CCCCccccCceeEEEEeeeccccccEEEEEEEecCccccC
Q 008991 99 SMFDL------DPSEALLTSAKTGQGLEHVLPAVIERI--PPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKG 170 (547)
Q Consensus 99 ~~l~~------~~~~vi~~SAk~g~Gv~~Ll~~l~~~i--p~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~g 170 (547)
+. ++ ...+++++||++|.|+++|+++|.... ..+..+++.|+.+.||+++.|+++|.+++++|++|+|++|
T Consensus 415 ~~-~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~G 493 (787)
T PRK05306 415 EY-GLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVG 493 (787)
T ss_pred Hh-cccHHHhCCCceEEEEeCCCCCCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecC
Confidence 42 22 124799999999999999999997532 2234456789999999999999999999999999999999
Q ss_pred CEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccc-cccCcccCCCCC------------------
Q 008991 171 DKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEA-RIGDTLYHNKSI------------------ 230 (547)
Q Consensus 171 d~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~-~~Gdtl~~~~~~------------------ 230 (547)
|.|.+.+ . ...|..+.. +..+++++.|||++.+. |+ .++ .+||+|+...+.
T Consensus 494 d~vv~g~--~---~gkVr~m~~~~~~~v~~A~pGd~V~I~-gl---~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~ 564 (787)
T PRK05306 494 DIVVAGT--T---YGRVRAMVDDNGKRVKEAGPSTPVEIL-GL---SGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKK 564 (787)
T ss_pred CEEEECC--c---EEEEEEEECCCCCCCCEEcCCCeEEEe-CC---CCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999863 2 334444444 45688999999999887 76 445 789999843211
Q ss_pred -----CCCCCCCC--C---CcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecC------c----ccccceEEEe
Q 008991 231 -----VEPLPGFK--P---AKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKET------S----TALGLGFRCG 290 (547)
Q Consensus 231 -----~~~l~~~~--~---~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~------s----~~lg~~~~~G 290 (547)
...+..+. . ..+.+...+.+...+..+.|.++|.+|..+|+.+.+-... + .+...++.+|
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a~ii~ 644 (787)
T PRK05306 565 LARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNAIIIG 644 (787)
T ss_pred hhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCCEEEE
Confidence 01111111 0 1124777888888999999999999999999999986631 1 0122568889
Q ss_pred ecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeCCCCCCCCcccccceeecceEEEEEEcCCCcHHHHH
Q 008991 291 FLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVI 370 (547)
Q Consensus 291 flG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~ 370 (547)
| + ...+--...+.++-|+++... .|+|+-. +- ....+..+|+|...-+++=+.+.. .|.
T Consensus 645 F-n-v~~~~~~~~~a~~~~v~i~~~--~iIY~l~--d~--------------~~~~~~~~l~~~~~e~~~g~a~v~-~vF 703 (787)
T PRK05306 645 F-N-VRPDAKARKLAEQEGVDIRYY--SIIYDLI--DD--------------VKAAMSGMLEPEYEEEIIGQAEVR-EVF 703 (787)
T ss_pred E-c-CCCCHHHHHHHHHcCCEEEEe--ChHHHHH--HH--------------HHHHHhhccCchhheeeeeeEEEE-EEE
Confidence 8 3 333444455555558888764 4666532 10 001112234443332222111110 000
Q ss_pred HHHhhcCeeEeeeeEcCC-----cEE------EEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccc
Q 008991 371 TLCSERRGQQLEYSFIDS-----QRA------FMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEY 427 (547)
Q Consensus 371 ~~l~~rRG~~~~~~~~~~-----~~~------~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y 427 (547)
. .++-|.+.+..-.++ ..+ .+.|.-.+..|- .|-++.+.+..|+ .+-..+.+|
T Consensus 704 ~--~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~v~ev~~g~-ecgi~~~~~ 767 (787)
T PRK05306 704 K--VSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLK-RFKDDVKEVRAGY-ECGIGLENY 767 (787)
T ss_pred e--cCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhc-ccCcCccEeCCCC-EEEEEeecc
Confidence 0 122345555433221 111 233666788874 8999999999998 455555555
No 28
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=1.7e-27 Score=262.73 Aligned_cols=378 Identities=21% Similarity=0.287 Sum_probs=261.1
Q ss_pred EEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhc
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMF 101 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l 101 (547)
.++|||||||.+|...+.++++.+|++++|+|+++|.+.||.+++..+...++|+|+++||+|+++++++++.+++.+ +
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~ 214 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-Y 214 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-h
Confidence 789999999999999999999999999999999999999999999999999999999999999988887776666543 2
Q ss_pred CCC------CccceeccccccccccccHHHHHhh--CCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEE
Q 008991 102 DLD------PSEALLTSAKTGQGLEHVLPAVIER--IPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKI 173 (547)
Q Consensus 102 ~~~------~~~vi~~SAk~g~Gv~~Ll~~l~~~--ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v 173 (547)
++. ..+++++||++|.|+++++++|... ++.+...++.|+++.|+++++++++|++++++|++|+|++||.|
T Consensus 215 g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~i 294 (587)
T TIGR00487 215 GLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIV 294 (587)
T ss_pred hhhHHhcCCCceEEEEECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEE
Confidence 221 2368999999999999999999653 34444456789999999999999999999999999999999999
Q ss_pred EEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCC-----------------------
Q 008991 174 SSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSI----------------------- 230 (547)
Q Consensus 174 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~----------------------- 230 (547)
.+.+. ..+|+.+... +...++++.||+.+.+. |+++. ...||++....+.
T Consensus 295 v~~~~--~~kVr~l~~~--~g~~v~~a~~g~~v~i~-Gl~~~--p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~ 367 (587)
T TIGR00487 295 VVGAA--YGRVRAMIDE--NGKSVKEAGPSKPVEIL-GLSDV--PAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSV 367 (587)
T ss_pred EECCC--ccEEEEEECC--CCCCCCEECCCCEEEEe-CCCCC--CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 98864 3456655432 34578899999999887 77432 2689999733210
Q ss_pred CCCCCCCC-----CCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecC------c----ccccceEEEeecccc
Q 008991 231 VEPLPGFK-----PAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKET------S----TALGLGFRCGFLGLL 295 (547)
Q Consensus 231 ~~~l~~~~-----~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~------s----~~lg~~~~~GflG~L 295 (547)
...+..+. ...|.+...+.+...+..++|.++|.+|..+|+++.+-.-. + .+....+.+|| +.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~F-nv- 445 (587)
T TIGR00487 368 KVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNAIIIGF-NV- 445 (587)
T ss_pred ccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCCEEEEE-ec-
Confidence 00011111 12367788889989999999999999999999999876631 1 01124578888 32
Q ss_pred hHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeCCCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhh
Q 008991 296 HMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSE 375 (547)
Q Consensus 296 Hlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~ 375 (547)
..+--.+.+.++-|+++... .|+|+-. +. .......+++|...-.++-+.+.. .|.. .+
T Consensus 446 ~~~~~~~~~a~~~~v~i~~~--~iIY~l~--d~--------------~~~~~~~~~~~~~~~~~~g~a~v~-~vf~--~~ 504 (587)
T TIGR00487 446 RPDATAKNVAEAENVDIRYY--SVIYKLI--DE--------------IRAAMKGMLDPEYEEEIIGQAEVR-QVFN--VP 504 (587)
T ss_pred CCCHHHHHHHHHcCCeEEEe--ChHHHHH--HH--------------HHHHHHhccCcceeeEeeeeEEEE-EEEe--cC
Confidence 23333445555558887765 5677632 10 001112234443322222222211 0000 02
Q ss_pred cCeeEeeeeEcCC-----cEE------EEEEEechHhHHHHHHHHhcccCcCeEEEEeEe---ccceeccc
Q 008991 376 RRGQQLEYSFIDS-----QRA------FMKYCLPLREIVVDFYNELKSLTSGYASFDYED---SEYQQADM 432 (547)
Q Consensus 376 rRG~~~~~~~~~~-----~~~------~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~---~~y~~~~l 432 (547)
+.|.+.+..-.++ ..+ .+.|.-.++.|- .|-++.+....|+ .+-..+ ..|++.|.
T Consensus 505 ~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~-ecgi~~~~~~~~~~gD~ 573 (587)
T TIGR00487 505 KIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLK-RFKDDVKEVSNGY-ECGIGIKNYNDIKEGDI 573 (587)
T ss_pred CCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhh-ccCccccEECCCC-EEEEEEeccccCCCCCE
Confidence 3355555443321 111 233667888884 8999999999998 344444 44455444
No 29
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.6e-28 Score=245.45 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=182.9
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-------CchhhHHHHHHHHhcCCc-E
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESELT-I 76 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~lp-i 76 (547)
-|+|.+. ....+.++|+|||||.||..++..+.++||.|||||||..+ ...||++|..+++.+|+. +
T Consensus 69 rGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~l 148 (428)
T COG5256 69 RGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQL 148 (428)
T ss_pred cceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceE
Confidence 3666654 44668899999999999999999999999999999999998 899999999999999998 8
Q ss_pred EeeeecCCCCCCCHHH---HHHH---HHHhcCCCC--ccceeccccccccccc------------cHHHHHhhCCCCCcc
Q 008991 77 IPVINKIDQPTADPDR---VKAQ---LKSMFDLDP--SEALLTSAKTGQGLEH------------VLPAVIERIPPPRGI 136 (547)
Q Consensus 77 IvviNKiDl~~~~~~~---~~~~---i~~~l~~~~--~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~ 136 (547)
|+++||||+.+++.++ +..+ +.+.+|+.+ .+++++||.+|.|+.+ |+++|- .+..|...
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~ 227 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERP 227 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCC
Confidence 9999999999887533 3333 344457764 5689999999999865 788885 77778777
Q ss_pred ccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEE-EEEeccccc
Q 008991 137 INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVG-YVVTGMRST 215 (547)
Q Consensus 137 ~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig-~i~~glk~~ 215 (547)
.++||+..|.+++...+.|++..+||.+|.|++||+|+++|.+...+|+++... ..+++.+.|||.+ .-+.|+ ..
T Consensus 228 ~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~---~~~~~~a~~GD~i~~~vrgv-~~ 303 (428)
T COG5256 228 LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH---HEEISQAEPGDNVGFNVRGV-EK 303 (428)
T ss_pred CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec---ccccccCCCCCeEEEEecCC-ch
Confidence 899999999999988899999999999999999999999999998899988765 4678899999954 444554 35
Q ss_pred ccccccCcccCCCCC
Q 008991 216 KEARIGDTLYHNKSI 230 (547)
Q Consensus 216 ~~~~~Gdtl~~~~~~ 230 (547)
.+++.||++++.+++
T Consensus 304 ~dI~~Gdv~~~~~n~ 318 (428)
T COG5256 304 NDIRRGDVIGHSDNP 318 (428)
T ss_pred hccCCccEeccCCCC
Confidence 779999999988744
No 30
>PRK12736 elongation factor Tu; Reviewed
Probab=99.96 E-value=6.4e-28 Score=256.26 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=179.0
Q ss_pred CCCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeec
Q 008991 9 GPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINK 82 (547)
Q Consensus 9 ~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNK 82 (547)
..|+|.+. ..++..++|||||||.+|..++.++++.+|++++|+|+.+|++.||.+++.++...++| +|+|+||
T Consensus 58 ~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 58 ERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred hcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEe
Confidence 35666554 34567899999999999999999999999999999999999999999999999999999 6789999
Q ss_pred CCCCCCC--HHHHHHHHHHh---cCCC--Cccceeccccccc--------cccccHHHHHhhCCCCCccccCceeEEEEe
Q 008991 83 IDQPTAD--PDRVKAQLKSM---FDLD--PSEALLTSAKTGQ--------GLEHVLPAVIERIPPPRGIINSSLRMLLLD 147 (547)
Q Consensus 83 iDl~~~~--~~~~~~~i~~~---l~~~--~~~vi~~SAk~g~--------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~ 147 (547)
+|+.+.+ .+.+.+++.+. +++. ..+++++||++|. ++.+|++.+.+.+|+|....++||++.|++
T Consensus 138 ~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~ 217 (394)
T PRK12736 138 VDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVED 217 (394)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEE
Confidence 9996422 12233345444 3432 3579999999983 678999999999998887788999999999
Q ss_pred eeccccccEEEEEEEecCccccCCEEEEecC--CCeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCcc
Q 008991 148 SYYDEYKGVICHVAVVDGTLRKGDKISSAAT--GQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTL 224 (547)
Q Consensus 148 ~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~--~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl 224 (547)
+|++++.|++++|+|.+|+|++||+|++++. +...+|++|... ..+++++.|||.+.+. .|+ +..+++.||+|
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~---~~~~~~a~aGd~v~l~l~~i-~~~~i~~G~vl 293 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF---RKLLDEGQAGDNVGVLLRGV-DRDEVERGQVL 293 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC---CEEccEECCCCEEEEEECCC-cHHhCCcceEE
Confidence 9999999999999999999999999999887 556788888764 4678999999977664 344 33689999999
Q ss_pred cCCC
Q 008991 225 YHNK 228 (547)
Q Consensus 225 ~~~~ 228 (547)
+.++
T Consensus 294 ~~~~ 297 (394)
T PRK12736 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 8865
No 31
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=1.6e-27 Score=256.31 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=176.1
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-------chhhHHHHHHHHhcCCc-EEeeeecCCCCC-
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-------QAQTVANFYLAFESELT-IIPVINKIDQPT- 87 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~lp-iIvviNKiDl~~- 87 (547)
..+++.++|+|||||.+|..++..+++.+|+|+||||+.+|+ +.||.++|.++...++| +|+++||||+..
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 556789999999999999999999999999999999999997 58999999999999998 678999999543
Q ss_pred ----CCHHHHHHHHHHhc---CCC--Cccceeccccccccccc------------cHHHHHhhCCCCCccccCceeEEEE
Q 008991 88 ----ADPDRVKAQLKSMF---DLD--PSEALLTSAKTGQGLEH------------VLPAVIERIPPPRGIINSSLRMLLL 146 (547)
Q Consensus 88 ----~~~~~~~~~i~~~l---~~~--~~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~~~~p~~~~v~ 146 (547)
.+++++.+++.+.+ ++. ..+++++||.+|.|+.+ |+++|. .+++|....+.||++.|.
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~-~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALD-TLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHh-CCCCCCcCCCCCeEEEEE
Confidence 34566677777665 343 35799999999999974 788874 456676677899999999
Q ss_pred eeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccc--cccccccCcc
Q 008991 147 DSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRS--TKEARIGDTL 224 (547)
Q Consensus 147 ~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~--~~~~~~Gdtl 224 (547)
++|..++.|+++.|+|.+|+|++||+|.+.|++...+|++|...+ .++++|.|||.+.+. +++ ..+++.||+|
T Consensus 240 ~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~---~~~~~a~aG~~v~i~--L~~i~~~~v~rG~vl 314 (446)
T PTZ00141 240 DVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHH---EQLAEAVPGDNVGFN--VKNVSVKDIKRGYVA 314 (446)
T ss_pred EEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecC---cccCEECCCCEEEEE--ECCCCHHHcCCceEE
Confidence 999999999999999999999999999999999999999987654 678999999987775 333 4678999999
Q ss_pred cCCC
Q 008991 225 YHNK 228 (547)
Q Consensus 225 ~~~~ 228 (547)
++..
T Consensus 315 ~~~~ 318 (446)
T PTZ00141 315 SDSK 318 (446)
T ss_pred ecCC
Confidence 8864
No 32
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.95 E-value=1.4e-27 Score=256.52 Aligned_cols=206 Identities=23% Similarity=0.308 Sum_probs=174.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-------chhhHHHHHHHHhcCCc-EEeeeecCCCCC-
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-------QAQTVANFYLAFESELT-IIPVINKIDQPT- 87 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~lp-iIvviNKiDl~~- 87 (547)
..+++.++|+|||||.||..++..+++.+|+||||||+++|. ..||.++|.++...++| +|+++||||+..
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence 456789999999999999999999999999999999999973 37999999999999997 688999999862
Q ss_pred ----CCHHHHHHHHHHhc---CCC--Cccceeccccccccccc------------cHHHHHhhCCCCCccccCceeEEEE
Q 008991 88 ----ADPDRVKAQLKSMF---DLD--PSEALLTSAKTGQGLEH------------VLPAVIERIPPPRGIINSSLRMLLL 146 (547)
Q Consensus 88 ----~~~~~~~~~i~~~l---~~~--~~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~~~~p~~~~v~ 146 (547)
.+++++.++++..+ ++. ..+++++||++|+|+.+ |+++|. .++.|....+.||++.|.
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~-~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALD-QINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHh-hcCCCccccCCCcEEEEE
Confidence 23455666676654 443 35799999999999864 677764 567777778899999999
Q ss_pred eeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccc--cccccccCcc
Q 008991 147 DSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRS--TKEARIGDTL 224 (547)
Q Consensus 147 ~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~--~~~~~~Gdtl 224 (547)
++|..++.|+++.|+|.+|+|++||+|.+.|++...+|++|... ..+++++.|||.+.+. +++ ..+++.||+|
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~---~~~v~~a~aGd~v~i~--l~~~~~~~i~rG~vl 314 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH---HESLQEALPGDNVGFN--VKNVAVKDLKRGYVA 314 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC---CeEeCEecCCCeEEEE--ECCCCHhhCCCccEE
Confidence 99999999999999999999999999999999999999998764 3688999999977764 333 3679999999
Q ss_pred cCCC
Q 008991 225 YHNK 228 (547)
Q Consensus 225 ~~~~ 228 (547)
++..
T Consensus 315 ~~~~ 318 (447)
T PLN00043 315 SNSK 318 (447)
T ss_pred ccCC
Confidence 8863
No 33
>CHL00071 tufA elongation factor Tu
Probab=99.95 E-value=3.7e-27 Score=251.58 Aligned_cols=215 Identities=21% Similarity=0.300 Sum_probs=177.5
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecC
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKI 83 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKi 83 (547)
+|+|.+. ..++.+++|+|||||.+|...+.+++..+|++++|+|+.+|++.||.+++..+...++| +|+++||+
T Consensus 59 rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~ 138 (409)
T CHL00071 59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKE 138 (409)
T ss_pred CCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 6777763 44567899999999999999999999999999999999999999999999999999999 77899999
Q ss_pred CCCCCC--HHHHHHHHHHhc---CCC--Cccceecccccccc------------------ccccHHHHHhhCCCCCcccc
Q 008991 84 DQPTAD--PDRVKAQLKSMF---DLD--PSEALLTSAKTGQG------------------LEHVLPAVIERIPPPRGIIN 138 (547)
Q Consensus 84 Dl~~~~--~~~~~~~i~~~l---~~~--~~~vi~~SAk~g~G------------------v~~Ll~~l~~~ip~p~~~~~ 138 (547)
|+.+.+ .+...+++.+.+ +++ ..+++++||.+|.| +..|+++|.+.+|+|..+.+
T Consensus 139 D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~ 218 (409)
T CHL00071 139 DQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTD 218 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCC
Confidence 997532 122333444443 333 25799999999873 46788999888888887788
Q ss_pred CceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecC--CCeeEEEEEEeecCCcccccccccCcEEEEE-eccccc
Q 008991 139 SSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAAT--GQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRST 215 (547)
Q Consensus 139 ~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~--~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~ 215 (547)
.||++.|+++|++++.|++++|+|.+|++++||.|.+.+. +...+|++|...+ .+++++.|||.+.+. .++ +.
T Consensus 219 ~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~---~~v~~a~aGd~v~i~l~~i-~~ 294 (409)
T CHL00071 219 KPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQ---KTLDEGLAGDNVGILLRGI-QK 294 (409)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcC---cCCCEECCCceeEEEEcCC-CH
Confidence 9999999999999999999999999999999999998763 4567888887643 578899999988765 243 23
Q ss_pred ccccccCcccCCC
Q 008991 216 KEARIGDTLYHNK 228 (547)
Q Consensus 216 ~~~~~Gdtl~~~~ 228 (547)
.++++||+|++.+
T Consensus 295 ~~i~~G~vl~~~~ 307 (409)
T CHL00071 295 EDIERGMVLAKPG 307 (409)
T ss_pred HHcCCeEEEecCC
Confidence 6899999998875
No 34
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=4.2e-27 Score=250.16 Aligned_cols=215 Identities=20% Similarity=0.281 Sum_probs=175.5
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecC
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKI 83 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKi 83 (547)
.|+|.+. ..++.+++|||||||.+|..++.++++.+|++++|+|+.+|+..||.+++..+...++|.+ +++||+
T Consensus 59 rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~ 138 (394)
T TIGR00485 59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKC 138 (394)
T ss_pred cCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 5666544 3556789999999999999999999999999999999999999999999999999999965 689999
Q ss_pred CCCCCC--HHHHHHHHHHhc---CCCC--ccceeccccccc--------cccccHHHHHhhCCCCCccccCceeEEEEee
Q 008991 84 DQPTAD--PDRVKAQLKSMF---DLDP--SEALLTSAKTGQ--------GLEHVLPAVIERIPPPRGIINSSLRMLLLDS 148 (547)
Q Consensus 84 Dl~~~~--~~~~~~~i~~~l---~~~~--~~vi~~SAk~g~--------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~ 148 (547)
|+.+.+ .+...+++.+.+ ++.. .+++++||++|. ++..++++|.+.+|+|....++||++.|+++
T Consensus 139 Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~v 218 (394)
T TIGR00485 139 DMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDV 218 (394)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEE
Confidence 996532 222233444443 3332 689999999885 3557888888888888777889999999999
Q ss_pred eccccccEEEEEEEecCccccCCEEEEecC--CCeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCccc
Q 008991 149 YYDEYKGVICHVAVVDGTLRKGDKISSAAT--GQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTLY 225 (547)
Q Consensus 149 ~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~--~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl~ 225 (547)
|++++.|++++|+|.+|+|++||+|.+.+. +...+|++|... ..+++++.|||.+.+. .++. ..+++.||+|+
T Consensus 219 f~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~---~~~~~~a~aGd~v~l~l~~i~-~~~i~rG~vl~ 294 (394)
T TIGR00485 219 FSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF---RKELDEGRAGDNVGLLLRGIK-REEIERGMVLA 294 (394)
T ss_pred EeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC---CeEEEEECCCCEEEEEeCCcc-HHHCCccEEEe
Confidence 999999999999999999999999999874 567889988764 3678899999987764 3432 36799999998
Q ss_pred CCC
Q 008991 226 HNK 228 (547)
Q Consensus 226 ~~~ 228 (547)
+.+
T Consensus 295 ~~~ 297 (394)
T TIGR00485 295 KPG 297 (394)
T ss_pred cCC
Confidence 864
No 35
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.95 E-value=6.9e-27 Score=251.11 Aligned_cols=215 Identities=25% Similarity=0.358 Sum_probs=179.6
Q ss_pred CCCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCC--CCchhhHHHHHHHHhcCCc-EEeee
Q 008991 9 GPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQ--GVQAQTVANFYLAFESELT-IIPVI 80 (547)
Q Consensus 9 ~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~--g~~~qt~~~~~~~~~~~lp-iIvvi 80 (547)
.+|+|++. +.+++.++|||||||.+|...+..+++.+|++++|+|+++ +.+.++.+++..+...++| +++++
T Consensus 67 ~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivvi 146 (425)
T PRK12317 67 ERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAI 146 (425)
T ss_pred hcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEE
Confidence 57888875 4567899999999999999999999999999999999999 9999999999998888874 89999
Q ss_pred ecCCCCCCCH---HHHHHHHHHh---cCCC--Cccceeccccccccccc------------cHHHHHhhCCCCCccccCc
Q 008991 81 NKIDQPTADP---DRVKAQLKSM---FDLD--PSEALLTSAKTGQGLEH------------VLPAVIERIPPPRGIINSS 140 (547)
Q Consensus 81 NKiDl~~~~~---~~~~~~i~~~---l~~~--~~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~~~~p 140 (547)
||+|+.+.+. +...+++.+. +++. ..+++++||++|.|+++ |+++| +.+|+|....+.|
T Consensus 147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~~~~~~p 225 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPEKPTDKP 225 (425)
T ss_pred EccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCccccCCC
Confidence 9999976433 2334455443 3443 35799999999999987 66775 5577777777899
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-eccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEAR 219 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~ 219 (547)
|++.|.++|..++.|+++.|+|.+|+|++||+|.+.|.+...+|++|...+ .+++++.|||.+.+. .++ +..+++
T Consensus 226 ~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~---~~~~~a~aG~~v~i~l~~~-~~~~i~ 301 (425)
T PRK12317 226 LRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHH---EELPQAEPGDNIGFNVRGV-GKKDIK 301 (425)
T ss_pred cEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECC---cccCEECCCCeEEEEECCC-CHHHcc
Confidence 999999999999999999999999999999999999999999999987653 678999999977664 333 346789
Q ss_pred ccCcccCCC
Q 008991 220 IGDTLYHNK 228 (547)
Q Consensus 220 ~Gdtl~~~~ 228 (547)
.||++++++
T Consensus 302 rG~vl~~~~ 310 (425)
T PRK12317 302 RGDVCGHPD 310 (425)
T ss_pred CccEecCCC
Confidence 999998765
No 36
>PRK12735 elongation factor Tu; Reviewed
Probab=99.95 E-value=1.9e-26 Score=245.11 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=177.8
Q ss_pred CCCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeec
Q 008991 9 GPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINK 82 (547)
Q Consensus 9 ~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNK 82 (547)
..|+|.+. ..++.+++|+|||||.+|..++.+++..+|++++|+|+.+|+..||.+++..+...++|.+ +++||
T Consensus 58 ~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 58 ARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred hcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEe
Confidence 45676653 4456789999999999999999999999999999999999999999999999999999965 67999
Q ss_pred CCCCCCC--HHHHHHHHHHh---cCCC--Cccceeccccccc----------cccccHHHHHhhCCCCCccccCceeEEE
Q 008991 83 IDQPTAD--PDRVKAQLKSM---FDLD--PSEALLTSAKTGQ----------GLEHVLPAVIERIPPPRGIINSSLRMLL 145 (547)
Q Consensus 83 iDl~~~~--~~~~~~~i~~~---l~~~--~~~vi~~SAk~g~----------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v 145 (547)
+|+.+.. .+...+++... +++. ..+++++||++|. |+..|+++|.+.+|+|....++||++.|
T Consensus 138 ~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I 217 (396)
T PRK12735 138 CDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPI 217 (396)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEE
Confidence 9996421 12223344443 3432 3578999999994 6788999999999988877889999999
Q ss_pred EeeeccccccEEEEEEEecCccccCCEEEEecC--CCeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccC
Q 008991 146 LDSYYDEYKGVICHVAVVDGTLRKGDKISSAAT--GQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGD 222 (547)
Q Consensus 146 ~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~--~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gd 222 (547)
.++|+.++.|+++.|+|.+|+|++||+|.+++. +...+|++|... ..+++++.|||.+.+. .|+ +.++++.||
T Consensus 218 ~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~---~~~v~~a~aGd~v~l~L~~i-~~~~i~rG~ 293 (396)
T PRK12735 218 EDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF---RKLLDEGQAGDNVGVLLRGT-KREDVERGQ 293 (396)
T ss_pred EEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC---CeEeCEECCCCEEEEEeCCC-cHHHCCcce
Confidence 999999999999999999999999999999986 356788888764 3678999999977764 344 337899999
Q ss_pred cccCCC
Q 008991 223 TLYHNK 228 (547)
Q Consensus 223 tl~~~~ 228 (547)
+|++.+
T Consensus 294 vl~~~~ 299 (396)
T PRK12735 294 VLAKPG 299 (396)
T ss_pred EEEcCC
Confidence 999865
No 37
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.95 E-value=3e-26 Score=246.14 Aligned_cols=214 Identities=25% Similarity=0.358 Sum_probs=175.6
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC---CchhhHHHHHHHHhcCC-cEEeee
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG---VQAQTVANFYLAFESEL-TIIPVI 80 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g---~~~qt~~~~~~~~~~~l-piIvvi 80 (547)
.|+|.+. ..+++.++|||||||.+|...+..+++.+|++++|+|++++ ...++.+++..+...++ |+|+|+
T Consensus 69 rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVvi 148 (426)
T TIGR00483 69 RGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAI 148 (426)
T ss_pred cCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEE
Confidence 4666543 45678999999999999999999999999999999999999 78888888888877775 488999
Q ss_pred ecCCCCCCCHH---HHHHHHHHh---cCCC--Cccceeccccccccccc------------cHHHHHhhCCCCCccccCc
Q 008991 81 NKIDQPTADPD---RVKAQLKSM---FDLD--PSEALLTSAKTGQGLEH------------VLPAVIERIPPPRGIINSS 140 (547)
Q Consensus 81 NKiDl~~~~~~---~~~~~i~~~---l~~~--~~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~~~~p 140 (547)
||+|+.+++.+ ...+++.+. +++. ..+++++||++|.|+.+ |+++|. .+++|....+.|
T Consensus 149 NK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~-~~~~~~~~~~~p 227 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALD-ALEPPEKPTDKP 227 (426)
T ss_pred EChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHh-cCCCCCCccCCC
Confidence 99999764432 233444433 3442 35789999999999986 888884 567777677899
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-eccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEAR 219 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~ 219 (547)
|++.|.++|+.++.|+++.|+|.+|+|++||.|.+.|.+...+|++|...+ .+++++.|||.+.+. .++ +..+++
T Consensus 228 ~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~---~~~~~a~aG~~v~i~l~~i-~~~~i~ 303 (426)
T TIGR00483 228 LRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH---EQIEQAEPGDNIGFNVRGV-SKKDIR 303 (426)
T ss_pred cEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC---cccCEEcCCCEEEEEECCC-Chhhcc
Confidence 999999999999999999999999999999999999999999999987654 678899999987774 232 346799
Q ss_pred ccCcccCCC
Q 008991 220 IGDTLYHNK 228 (547)
Q Consensus 220 ~Gdtl~~~~ 228 (547)
.||+|++++
T Consensus 304 rG~vl~~~~ 312 (426)
T TIGR00483 304 RGDVCGHPD 312 (426)
T ss_pred cceEEecCC
Confidence 999998765
No 38
>PRK00049 elongation factor Tu; Reviewed
Probab=99.94 E-value=2.5e-26 Score=244.19 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=178.4
Q ss_pred CCCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeec
Q 008991 9 GPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINK 82 (547)
Q Consensus 9 ~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNK 82 (547)
..|+|.+. ..++.+++|+|||||.+|..++..++..+|++++|+|+.+|++.||.+++..+...++|.+ +++||
T Consensus 58 ~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 58 ARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred hcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEee
Confidence 45666654 3456789999999999999999999999999999999999999999999999999999975 68999
Q ss_pred CCCCCCC--HHHHHHHHHHhc---CC--CCccceeccccccc----------cccccHHHHHhhCCCCCccccCceeEEE
Q 008991 83 IDQPTAD--PDRVKAQLKSMF---DL--DPSEALLTSAKTGQ----------GLEHVLPAVIERIPPPRGIINSSLRMLL 145 (547)
Q Consensus 83 iDl~~~~--~~~~~~~i~~~l---~~--~~~~vi~~SAk~g~----------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v 145 (547)
+|+.+.. .+...+++.+.+ ++ ...+++++||++|. |+..|+++|.+.+|+|....++||++.|
T Consensus 138 ~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I 217 (396)
T PRK00049 138 CDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPI 217 (396)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEE
Confidence 9996421 122334555443 33 23578999999975 5678999999999888877889999999
Q ss_pred EeeeccccccEEEEEEEecCccccCCEEEEecC--CCeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccC
Q 008991 146 LDSYYDEYKGVICHVAVVDGTLRKGDKISSAAT--GQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGD 222 (547)
Q Consensus 146 ~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~--~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gd 222 (547)
.++|+.++.|+++.|+|.+|++++||+|.+++. +...+|++|...+ .+++++.|||.+.+. .|+ +.++++.||
T Consensus 218 ~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~---~~~~~a~~Gd~v~l~l~~i-~~~~i~~G~ 293 (396)
T PRK00049 218 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFR---KLLDEGQAGDNVGALLRGI-KREDVERGQ 293 (396)
T ss_pred EEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECC---cEeCEEcCCCEEEEEeCCC-CHHHCCcce
Confidence 999999999999999999999999999999876 5777888887654 678899999976664 343 236899999
Q ss_pred cccCCC
Q 008991 223 TLYHNK 228 (547)
Q Consensus 223 tl~~~~ 228 (547)
++++.+
T Consensus 294 vl~~~~ 299 (396)
T PRK00049 294 VLAKPG 299 (396)
T ss_pred EEecCC
Confidence 999865
No 39
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.94 E-value=2e-26 Score=247.05 Aligned_cols=205 Identities=22% Similarity=0.262 Sum_probs=169.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-CchhhHHHHHHHHhcCCc-EEeeeecCCCCCC-CHHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-VQAQTVANFYLAFESELT-IIPVINKIDQPTA-DPDRVKAQL 97 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~-~~~~~~~~i 97 (547)
..++|+|||||.+|..++..+++.+|+++|||||.++ ++.||.+++..+...+++ +|+|+||+|+.+. +.++..+++
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei 196 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEI 196 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999997 799999999999889987 7899999999743 234445566
Q ss_pred HHhcC---CCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeec--------cccccEEEEEEEecCc
Q 008991 98 KSMFD---LDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYY--------DEYKGVICHVAVVDGT 166 (547)
Q Consensus 98 ~~~l~---~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~--------d~~~G~v~~~rV~~G~ 166 (547)
.+.+. ....+++++||++|.|++.|++.|.+.+|.|..+.+.||++.|.++|. +.++|+|+.|+|.+|+
T Consensus 197 ~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~ 276 (460)
T PTZ00327 197 RNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGV 276 (460)
T ss_pred HHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeece
Confidence 55431 234689999999999999999999999999887788999999998773 3458999999999999
Q ss_pred cccCCEEEEecCC-------------CeeEEEEEEeecCCcccccccccCcEEEEEecc---cccccccccCcccCCC
Q 008991 167 LRKGDKISSAATG-------------QAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGM---RSTKEARIGDTLYHNK 228 (547)
Q Consensus 167 lk~gd~v~~~~~~-------------~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~gl---k~~~~~~~Gdtl~~~~ 228 (547)
+++||+|.+.|.+ ...+|++|... ..+++++.|||.+.+...+ -+..++..||+++.++
T Consensus 277 l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~---~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~ 351 (460)
T PTZ00327 277 LKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAE---NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPG 351 (460)
T ss_pred EecCCEEEEccCcccccccCccccccceEEEEEEEEC---CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCC
Confidence 9999999999865 23467777653 4788999999988775321 1235788999999865
No 40
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.94 E-value=3.4e-26 Score=254.07 Aligned_cols=215 Identities=19% Similarity=0.287 Sum_probs=178.7
Q ss_pred CCeEEEeC------CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeec
Q 008991 10 PGTSEAHN------PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINK 82 (547)
Q Consensus 10 pG~T~~~~------~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNK 82 (547)
.|.|.+.. .++..++|||||||.+|...+..++..+|++++|||+++|+..||.+++..+...++| +|+|+||
T Consensus 34 rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNK 113 (614)
T PRK10512 34 RGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTK 113 (614)
T ss_pred CCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 46665532 2345789999999999999999999999999999999999999999999999889998 5799999
Q ss_pred CCCCCC-CHHHHHHHHHHhc---CCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEE
Q 008991 83 IDQPTA-DPDRVKAQLKSMF---DLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVIC 158 (547)
Q Consensus 83 iDl~~~-~~~~~~~~i~~~l---~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~ 158 (547)
+|+.+. ..+...+++.+.+ ++...+++++||++|.|+++|++.|.+.. .|....++||++.|.++|..++.|+|+
T Consensus 114 iDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~~~~~~~~rl~Id~vf~v~G~GtVv 192 (614)
T PRK10512 114 ADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP-EREHAAQHRFRLAIDRAFTVKGAGLVV 192 (614)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh-ccccCcCCCceEEEEEEeccCCCeEEE
Confidence 999653 2344555665554 44456899999999999999999998654 444457899999999999999999999
Q ss_pred EEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEe-cccccccccccCcccCCC
Q 008991 159 HVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVT-GMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 159 ~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~-glk~~~~~~~Gdtl~~~~ 228 (547)
+|+|.+|+|++||+|.+.+.+...+|++|... ..+++++.|||.+.+.. |--+..+++.||+++..+
T Consensus 193 tGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~---~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 193 TGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ---NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEEecceEecCCEEEEcCCCCcEEEEEEecC---CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 99999999999999999999988889887664 36889999999988753 212346899999998764
No 41
>PLN03126 Elongation factor Tu; Provisional
Probab=99.94 E-value=3.3e-26 Score=247.03 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=174.8
Q ss_pred CCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecC
Q 008991 10 PGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKI 83 (547)
Q Consensus 10 pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKi 83 (547)
.|+|.+ +..++..++|||||||.+|..++..+++.+|++++|||+.+|++.||.++|..+...++| +|+++||+
T Consensus 128 rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~ 207 (478)
T PLN03126 128 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQ 207 (478)
T ss_pred CCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 455544 244567899999999999999999999999999999999999999999999999999999 77899999
Q ss_pred CCCCCC--HHHHHHHHHHhc---CCC--Cccceecccccccc------------------ccccHHHHHhhCCCCCcccc
Q 008991 84 DQPTAD--PDRVKAQLKSMF---DLD--PSEALLTSAKTGQG------------------LEHVLPAVIERIPPPRGIIN 138 (547)
Q Consensus 84 Dl~~~~--~~~~~~~i~~~l---~~~--~~~vi~~SAk~g~G------------------v~~Ll~~l~~~ip~p~~~~~ 138 (547)
|+.+.+ .+.+.+++.+.+ +++ ..+++++||.+|.+ +..|+++|.+..|.|....+
T Consensus 208 Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~ 287 (478)
T PLN03126 208 DQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTD 287 (478)
T ss_pred cccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccc
Confidence 996532 233333555443 443 45799999998853 34688888887777777778
Q ss_pred CceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCC--eeEEEEEEeecCCcccccccccCcEEEEE-eccccc
Q 008991 139 SSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQ--AYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRST 215 (547)
Q Consensus 139 ~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~ 215 (547)
.||++.|.++|+.+++|+|+.|+|.+|.|++||.|.+.+.+. ..+|++|... ..+++++.|||.+.+. .++ +.
T Consensus 288 ~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~---~~~v~~A~aG~~v~l~L~~i-~~ 363 (478)
T PLN03126 288 LPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF---QKILDEALAGDNVGLLLRGI-QK 363 (478)
T ss_pred cceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC---CeECCEEeCCceeeeeccCC-cH
Confidence 999999999999999999999999999999999999998763 5677777654 4678999999977664 333 34
Q ss_pred ccccccCcccCCC
Q 008991 216 KEARIGDTLYHNK 228 (547)
Q Consensus 216 ~~~~~Gdtl~~~~ 228 (547)
.+++.||+|++.+
T Consensus 364 ~di~rG~VL~~~~ 376 (478)
T PLN03126 364 ADIQRGMVLAKPG 376 (478)
T ss_pred HHcCCccEEecCC
Confidence 6799999999865
No 42
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.94 E-value=7.9e-26 Score=241.05 Aligned_cols=204 Identities=20% Similarity=0.292 Sum_probs=167.0
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHH---HH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPD---RV 93 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~---~~ 93 (547)
.++++++|||||||.+|..++..+++.+|++++|||+.+|++.||.+++..+...++| +|+|+||+|+.+++.+ ..
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999988886 7889999999765432 22
Q ss_pred HHHHH---HhcCCCCccceeccccccccccc------------cHHHHHhhCCCCCccccCceeEEEEeeecc--ccccE
Q 008991 94 KAQLK---SMFDLDPSEALLTSAKTGQGLEH------------VLPAVIERIPPPRGIINSSLRMLLLDSYYD--EYKGV 156 (547)
Q Consensus 94 ~~~i~---~~l~~~~~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d--~~~G~ 156 (547)
.+++. ..+++...+++++||++|.|+++ |++.| +.++.|....+.||++.|.+++.. ++.|
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g- 234 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFRG- 234 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcEE-
Confidence 33333 23355556799999999999986 45555 456667666789999999887643 3344
Q ss_pred EEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCC
Q 008991 157 ICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKS 229 (547)
Q Consensus 157 v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~ 229 (547)
..|+|.+|+|++||+|.+.|.+...+|++|...+ .+++++.|||.+.+. +++..+++.||+|++++.
T Consensus 235 -~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~---~~~~~a~~G~~v~l~--l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 235 -YAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD---GDLEQARAGQAVTLT--LDDEIDISRGDLLAAADS 301 (406)
T ss_pred -EEEEEecceeecCCEEEEeCCCcEEEEEEEEECC---cccCEeCCCCEEEEE--ECCccccCCccEEEcCCC
Confidence 5699999999999999999999999999998764 468899999998875 455678999999998753
No 43
>PLN03127 Elongation factor Tu; Provisional
Probab=99.94 E-value=8.3e-26 Score=242.68 Aligned_cols=215 Identities=20% Similarity=0.323 Sum_probs=175.5
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecC
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKI 83 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKi 83 (547)
+|+|.+. ..++.+++|+|||||.+|..++..++..+|++++|||+.+|++.||.+++..+...++| +|+++||+
T Consensus 108 rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKi 187 (447)
T PLN03127 108 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKV 187 (447)
T ss_pred cCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEee
Confidence 6777654 44567899999999999999999999999999999999999999999999999999999 57899999
Q ss_pred CCCCCC--HHHHHHHHHHhc---CCC--Cccceecccc---cccc-------ccccHHHHHhhCCCCCccccCceeEEEE
Q 008991 84 DQPTAD--PDRVKAQLKSMF---DLD--PSEALLTSAK---TGQG-------LEHVLPAVIERIPPPRGIINSSLRMLLL 146 (547)
Q Consensus 84 Dl~~~~--~~~~~~~i~~~l---~~~--~~~vi~~SAk---~g~G-------v~~Ll~~l~~~ip~p~~~~~~p~~~~v~ 146 (547)
|+.+.+ .+...+++.+.+ +++ ..+++++||. +|.| +..|+++|.+.+|.|....++||++.|.
T Consensus 188 Dlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~ 267 (447)
T PLN03127 188 DVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIE 267 (447)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEE
Confidence 996422 122223444433 332 3578888876 4545 6789999999999888778899999999
Q ss_pred eeeccccccEEEEEEEecCccccCCEEEEecC----CCeeEEEEEEeecCCcccccccccCcEEEEE-eccccccccccc
Q 008991 147 DSYYDEYKGVICHVAVVDGTLRKGDKISSAAT----GQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIG 221 (547)
Q Consensus 147 ~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~----~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~G 221 (547)
++|..++.|+++.|+|.+|+|++||.|.+.+. +...+|++|...+ .+++++.|||.+.+. .|+ +..+++.|
T Consensus 268 ~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~---~~v~~a~aGd~v~l~L~~i-~~~~i~rG 343 (447)
T PLN03127 268 DVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFK---KILDQGQAGDNVGLLLRGL-KREDVQRG 343 (447)
T ss_pred EEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEEC---cEeCEEcCCCEEEEEeCCC-CHHHCCCc
Confidence 99999999999999999999999999999864 3467888887764 578899999977764 344 33689999
Q ss_pred CcccCCC
Q 008991 222 DTLYHNK 228 (547)
Q Consensus 222 dtl~~~~ 228 (547)
|+|++.+
T Consensus 344 ~Vl~~~~ 350 (447)
T PLN03127 344 QVICKPG 350 (447)
T ss_pred cEEecCC
Confidence 9999864
No 44
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=3.5e-25 Score=236.23 Aligned_cols=206 Identities=22% Similarity=0.256 Sum_probs=168.8
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHHHHHHhcCCc-EEeeeecCCCCCCCH-HHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANFYLAFESELT-IIPVINKIDQPTADP-DRVKAQ 96 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~-~~~~~~ 96 (547)
.+.++|||||||.+|..++..+++.+|++++|+|++++. +.++..++..+...+++ +++|+||+|+.+.+. ....++
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHH
Confidence 368999999999999999999999999999999999997 89999999888888874 899999999975432 223344
Q ss_pred HHHhcC---CCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeec--------cccccEEEEEEEecC
Q 008991 97 LKSMFD---LDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYY--------DEYKGVICHVAVVDG 165 (547)
Q Consensus 97 i~~~l~---~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~--------d~~~G~v~~~rV~~G 165 (547)
+.+.+. ....+++++||++|.|+++|++.|.+.+|+|..+.+.||++.|.++|+ ++++|+|+.|+|.+|
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 243 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 243 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeC
Confidence 554432 123578999999999999999999999998887788999999999883 456788999999999
Q ss_pred ccccCCEEEEecCCC------------eeEEEEEEeecCCcccccccccCcEEEEEeccc---ccccccccCcccCCC
Q 008991 166 TLRKGDKISSAATGQ------------AYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMR---STKEARIGDTLYHNK 228 (547)
Q Consensus 166 ~lk~gd~v~~~~~~~------------~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk---~~~~~~~Gdtl~~~~ 228 (547)
+|++||.|.+.|.+. ..+|++|... ..+++++.|||.+.+...++ +..+++.||.|++++
T Consensus 244 ~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~---~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~ 318 (411)
T PRK04000 244 VLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG---GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPG 318 (411)
T ss_pred EEecCCEEEEcCCcceecccccccccceEEEeEEEEC---CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCC
Confidence 999999999998763 3467777654 46789999999888763211 225688999999875
No 45
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.93 E-value=3.7e-25 Score=236.01 Aligned_cols=205 Identities=21% Similarity=0.244 Sum_probs=167.9
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHHHHHHhcCCc-EEeeeecCCCCCCCH-HHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANFYLAFESELT-IIPVINKIDQPTADP-DRVKAQ 96 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~-~~~~~~ 96 (547)
...++|||||||.+|..++..+++.+|++++|||+++|. +.||.+++..+...+++ +++++||+|+.+.+. ....++
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999998 89999999988888765 899999999975432 223344
Q ss_pred HHHhcC---CCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeec--------cccccEEEEEEEecC
Q 008991 97 LKSMFD---LDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYY--------DEYKGVICHVAVVDG 165 (547)
Q Consensus 97 i~~~l~---~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~--------d~~~G~v~~~rV~~G 165 (547)
+.+.+. ....+++++||++|.|+++|+++|...+|.|..+.+.||++.|+++|+ ++++|+|..|+|.+|
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 238 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 238 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeC
Confidence 444332 124579999999999999999999998998877788999999999984 455788999999999
Q ss_pred ccccCCEEEEecCCC------------eeEEEEEEeecCCcccccccccCcEEEEEe----cccccccccccCcccCCC
Q 008991 166 TLRKGDKISSAATGQ------------AYEIVDVGIMHPELTPTGVLLTGQVGYVVT----GMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 166 ~lk~gd~v~~~~~~~------------~~~v~~i~~~~~~~~~v~~~~aGdig~i~~----glk~~~~~~~Gdtl~~~~ 228 (547)
+|++||+|.+.|.+. ..+|++|... ..+++++.|||.+.+.. ++ +..++..||.++.++
T Consensus 239 ~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~---~~~~~~a~~G~~v~i~l~~~~~i-~~~dv~~G~vl~~~~ 313 (406)
T TIGR03680 239 KLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG---GYKVEEARPGGLVGVGTKLDPAL-TKADALAGQVVGKPG 313 (406)
T ss_pred EEeCCCEEEEccCccccccccccccccceEEeEEEEC---CEECCEEcCCCEEEEeeccCCCC-CHHHcccccEEEcCC
Confidence 999999999998752 2467766654 47889999999887753 22 236788899998875
No 46
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.93 E-value=4.5e-25 Score=238.97 Aligned_cols=207 Identities=17% Similarity=0.254 Sum_probs=166.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCH---HH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADP---DR 92 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~---~~ 92 (547)
..++++++|||||||.+|..++..++..+|++++|||+.+|++.||.+++..+...+++ +|+++||+|+.+++. ++
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~ 182 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFER 182 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHH
Confidence 34567899999999999999999999999999999999999999999999999888865 788999999976543 23
Q ss_pred HHHHHHHh---cC-CCCccceecccccccccccc-----------HHHHHhhCCCCCccccCceeEEEEeeeccccccEE
Q 008991 93 VKAQLKSM---FD-LDPSEALLTSAKTGQGLEHV-----------LPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVI 157 (547)
Q Consensus 93 ~~~~i~~~---l~-~~~~~vi~~SAk~g~Gv~~L-----------l~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v 157 (547)
..+++... ++ ....+++++||++|.|+.++ |..+++.+|+|....+.||++.|.+++...+....
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g 262 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRG 262 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccc
Confidence 33444332 23 33468999999999999763 22345677777767789999999888643222122
Q ss_pred EEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCC
Q 008991 158 CHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 158 ~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~ 228 (547)
..|+|.+|+|++||+|.+.|.+...+|++|...+ .+++++.|||.+.+. +++..+++.||+|++++
T Consensus 263 ~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~---~~v~~A~aG~~V~l~--L~~~~~i~rG~VL~~~~ 328 (474)
T PRK05124 263 YAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD---GDLEEAFAGEAITLV--LEDEIDISRGDLLVAAD 328 (474)
T ss_pred eEEEEEeEEEecCCEEEEecCCceEEEEEEEEcC---ccccCcCCCCEEEEE--eCCccccCCccEEECCC
Confidence 5699999999999999999999999999998765 467899999998875 45667899999999875
No 47
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.93 E-value=1e-24 Score=243.80 Aligned_cols=385 Identities=17% Similarity=0.194 Sum_probs=253.3
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
+.++.++|||||||.+|..++.+++..+|++|||||+++|++.||.++|..+...++|+|+|+||+|+++++.+.+.+++
T Consensus 292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL 371 (742)
T CHL00189 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQL 371 (742)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999887776666665
Q ss_pred HHh------cCCCCccceeccccccccccccHHHHHhhCC--CCCccccCceeEEEEeeeccccccEEEEEEEecCcccc
Q 008991 98 KSM------FDLDPSEALLTSAKTGQGLEHVLPAVIERIP--PPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRK 169 (547)
Q Consensus 98 ~~~------l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip--~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~ 169 (547)
... ++ ...+++++||++|.|+++|+++|..... .+..+++.|+.+.|++++.|++.|++++++|.+|+|++
T Consensus 372 ~~~~ll~e~~g-~~vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~ 450 (742)
T CHL00189 372 AKYNLIPEKWG-GDTPMIPISASQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHI 450 (742)
T ss_pred HHhccchHhhC-CCceEEEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEec
Confidence 432 11 1247899999999999999999987542 33345567899999999999999999999999999999
Q ss_pred CCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCCC------------C--CC-
Q 008991 170 GDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIV------------E--PL- 234 (547)
Q Consensus 170 gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~------------~--~l- 234 (547)
||.|.+.+. ..+|..+. .....++.++.||+++.+. |+. ....+||+|.-..+.. . ..
T Consensus 451 GD~vv~g~~--~gkVr~m~--~~~~~~v~~a~pgdiV~I~-gl~--~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~ 523 (742)
T CHL00189 451 GDIIVIGTS--YAKIRGMI--NSLGNKINLATPSSVVEIW-GLS--SVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTT 523 (742)
T ss_pred CCEEEECCc--ceEEEEEE--cCCCcCccEEcCCCceEec-Ccc--cCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhh
Confidence 999988762 23444432 2345678999999999886 663 3567899986442100 0 00
Q ss_pred CCC----------CCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecC------c----ccccceEEEeeccc
Q 008991 235 PGF----------KPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKET------S----TALGLGFRCGFLGL 294 (547)
Q Consensus 235 ~~~----------~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~------s----~~lg~~~~~GflG~ 294 (547)
... ..-.+.+...+.....+-.+.|.++|.++..+...+.+-.-. + ......+.+|| +.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~a~ii~F-nv 602 (742)
T CHL00189 524 KRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNAEILAF-NT 602 (742)
T ss_pred cccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcCCEEEEe-eC
Confidence 000 001233444455555677889999999887766666655421 0 01123577787 33
Q ss_pred chHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeCCCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHh
Q 008991 295 LHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCS 374 (547)
Q Consensus 295 LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~ 374 (547)
- .+--..++.++.|+++... .|+|+-. .+ .......+++|-..-.+.-..+ +..|..
T Consensus 603 ~-~~~~~~~~a~~~~v~i~~~--~iIY~li-d~---------------~~~~~~~~l~~~~~~~~~g~a~-v~~vF~--- 659 (742)
T CHL00189 603 N-LAPGAKKAARKLNIIIKEY--QVIYDLL-EY---------------IEALMEDLLDPEYKKVPIGEAE-VKTVFP--- 659 (742)
T ss_pred C-CCHHHHHHHHHcCCEEEEe--ChHHHHH-HH---------------HHHHHhhccCceeeeeeceeEE-eeEEEe---
Confidence 2 3333344555558877664 4566532 00 0001122333333221110000 001110
Q ss_pred hcCeeEeeeeEcCC-----cEE------EEEEEechHhHHHHHHHHhcccCcCeE--EEEeEeccceeccceee
Q 008991 375 ERRGQQLEYSFIDS-----QRA------FMKYCLPLREIVVDFYNELKSLTSGYA--SFDYEDSEYQQADMVKL 435 (547)
Q Consensus 375 ~rRG~~~~~~~~~~-----~~~------~i~~~iPl~ei~~~f~~~Lks~T~G~a--s~~~~~~~y~~~~l~k~ 435 (547)
-.+|.+.+..-.++ ..+ .+.|.-.+..|- .|-++.+.+..|+- ..--.|..|++.|....
T Consensus 660 ~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk-~~k~~v~ev~~g~ecgi~i~~~~d~~~gD~ie~ 732 (742)
T CHL00189 660 LAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLK-RVKEDVEEAQEGNECGIFIEEFQLWQSGDKIHA 732 (742)
T ss_pred cCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHh-hcCccccEeCCCCEEEEEeeCCCCCCcCCEEEE
Confidence 01245555443321 111 234677788884 89999999999973 33334667777765443
No 48
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.93 E-value=1.8e-24 Score=239.66 Aligned_cols=215 Identities=21% Similarity=0.261 Sum_probs=174.7
Q ss_pred CCCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeec
Q 008991 9 GPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINK 82 (547)
Q Consensus 9 ~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNK 82 (547)
.+|+|.+. ...++.++|||||||.+|...+..++..+|++++|||+++|+..||.+++..+...++| +|+|+||
T Consensus 33 ~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK 112 (581)
T TIGR00475 33 KRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITK 112 (581)
T ss_pred cCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 35666554 22347899999999999999999999999999999999999999999999999889999 9999999
Q ss_pred CCCCCCCH-HHHHHHHHHh---cCCC-CccceeccccccccccccHHHHHhhCCCCC-ccccCceeEEEEeeeccccccE
Q 008991 83 IDQPTADP-DRVKAQLKSM---FDLD-PSEALLTSAKTGQGLEHVLPAVIERIPPPR-GIINSSLRMLLLDSYYDEYKGV 156 (547)
Q Consensus 83 iDl~~~~~-~~~~~~i~~~---l~~~-~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~-~~~~~p~~~~v~~~~~d~~~G~ 156 (547)
+|+.+.+. +...+++.+. +++. ..+++++||++|.|++++++.|.+.++... ...+.||++.|.++|..++.|+
T Consensus 113 ~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~Gt 192 (581)
T TIGR00475 113 ADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGT 192 (581)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEE
Confidence 99975432 2233444443 2332 468999999999999999998877554321 1247899999999999999999
Q ss_pred EEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEe-cccccccccccCcccCC
Q 008991 157 ICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVT-GMRSTKEARIGDTLYHN 227 (547)
Q Consensus 157 v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~-glk~~~~~~~Gdtl~~~ 227 (547)
|+.|+|.+|++++||+|.+.|.+...+|++|... ..+++++.|||.+.+.. |+ +..+++.|..++.+
T Consensus 193 Vv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~---~~~v~~a~aG~rval~L~~i-~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 193 VVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQ---NQDVEIAYAGQRIALNLMDV-EPESLKRGLLILTP 260 (581)
T ss_pred EEEEEEecceEecCCEEEECCCCceEEEeEEEEC---CccCCEEECCCEEEEEeCCC-CHHHcCCceEEcCC
Confidence 9999999999999999999999999999998764 36789999999888853 33 34568899666543
No 49
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-24 Score=224.28 Aligned_cols=216 Identities=22% Similarity=0.253 Sum_probs=187.4
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecC
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKI 83 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKi 83 (547)
-|+|-+. +-+++.+.|||+|||+||...+..++...|.|+||||+++|++.||.+|+..+...|++ .++|+||+
T Consensus 34 RG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~ 113 (447)
T COG3276 34 RGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKA 113 (447)
T ss_pred cCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecc
Confidence 3555544 34566899999999999999999999999999999999999999999999999999999 59999999
Q ss_pred CCCCC-CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEE
Q 008991 84 DQPTA-DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAV 162 (547)
Q Consensus 84 Dl~~~-~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV 162 (547)
|+.+. +.+...+++...+.+.+.+++.+|+++|.||++|.+.|.+....+..+.+.||+.+|...|..++.|+|++|.+
T Consensus 114 D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv 193 (447)
T COG3276 114 DRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTV 193 (447)
T ss_pred ccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEE
Confidence 99642 34555666666666777889999999999999999999988766667789999999999999999999999999
Q ss_pred ecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCC
Q 008991 163 VDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 163 ~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~ 228 (547)
+||+++.||++++.|.++..+|++|..+. ++++++.||+.+.+...--+.+++..||.|.+++
T Consensus 194 ~sG~V~v~D~L~l~p~~k~v~VRsIq~~d---~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 194 LSGEVKVGDKLYLSPINKEVRVRSIQAHD---VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred eeeeEEECCEEEEecCCCeEEEEeeeecC---cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 99999999999999999999999887654 7889999999888763222567899999998765
No 50
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3e-25 Score=220.20 Aligned_cols=207 Identities=24% Similarity=0.367 Sum_probs=173.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCC-CCH-HHHH-
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPT-ADP-DRVK- 94 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~-~~~-~~~~- 94 (547)
....+--+|||||.||.+++..+.++-|+|||||.|++|..+||++|+.+|++-|++ +++++||.|+.+ .+. +-+.
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEm 194 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEM 194 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHH
Confidence 334556799999999999999999999999999999999999999999999999999 888999999973 222 2222
Q ss_pred --HHHHHhcCCC--Cccceeccccccc----------cccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEE
Q 008991 95 --AQLKSMFDLD--PSEALLTSAKTGQ----------GLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHV 160 (547)
Q Consensus 95 --~~i~~~l~~~--~~~vi~~SAk~g~----------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~ 160 (547)
.++-..+|++ ..|++..||+... .|.+|++++-+++|.|..+.+.||...|-+.|..+++|+|+.+
T Consensus 195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtG 274 (449)
T KOG0460|consen 195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTG 274 (449)
T ss_pred HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEE
Confidence 3333445664 4589999987531 3778999999999999999999999999999999999999999
Q ss_pred EEecCccccCCEEEEecCCCe--eEEEEEEeecCCcccccccccCc-EEEEEecccccccccccCcccCCCC
Q 008991 161 AVVDGTLRKGDKISSAATGQA--YEIVDVGIMHPELTPTGVLLTGQ-VGYVVTGMRSTKEARIGDTLYHNKS 229 (547)
Q Consensus 161 rV~~G~lk~gd~v~~~~~~~~--~~v~~i~~~~~~~~~v~~~~aGd-ig~i~~glk~~~~~~~Gdtl~~~~~ 229 (547)
|+..|+||+||++.+...++. ..|..|.+|+ ..++++.||| +|.+..|+|. ++++.|.+++.++.
T Consensus 275 rlERG~lKkG~e~eivG~~~~lkttvtgiemF~---K~ld~a~AGDn~G~LlRGik~-~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 275 RLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFR---KSLDEAQAGDNLGALLRGIKR-EDVKRGMVLAKPGS 342 (449)
T ss_pred EEeecccccCCEEEEeccCcceeeEeehHHHHH---HHHHhcccccceehhhhcCCH-HHHhcccEEecCCc
Confidence 999999999999999876655 3455555554 6789999999 7888788865 79999999988763
No 51
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.9e-24 Score=210.93 Aligned_cols=208 Identities=23% Similarity=0.334 Sum_probs=171.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCC-H-HHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTAD-P-DRV 93 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~-~-~~~ 93 (547)
+..+..+-.+|||||.||..++..+.++.|++||||+|++|+.+||++|+.++++.|+| +++++||+|+.+.. . +.+
T Consensus 71 et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelV 150 (394)
T COG0050 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELV 150 (394)
T ss_pred ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHH
Confidence 33455677999999999999999999999999999999999999999999999999998 78899999997632 1 222
Q ss_pred HH---HHHHhcCCC--Cccceeccccccc--------cccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEE
Q 008991 94 KA---QLKSMFDLD--PSEALLTSAKTGQ--------GLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHV 160 (547)
Q Consensus 94 ~~---~i~~~l~~~--~~~vi~~SAk~g~--------Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~ 160 (547)
.. ++-+.++++ ..|++..||+... .|.+|++++.+++|.|..+.++||.+.|-|++...++|+++++
T Consensus 151 emEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtG 230 (394)
T COG0050 151 EMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTG 230 (394)
T ss_pred HHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEE
Confidence 23 333445665 4578888987543 3788999999999999999999999999999999999999999
Q ss_pred EEecCccccCCEEEEecCCC--eeEEEEEEeecCCcccccccccCc-EEEEEecccccccccccCcccCCC
Q 008991 161 AVVDGTLRKGDKISSAATGQ--AYEIVDVGIMHPELTPTGVLLTGQ-VGYVVTGMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 161 rV~~G~lk~gd~v~~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGd-ig~i~~glk~~~~~~~Gdtl~~~~ 228 (547)
||..|+|+.|+.+.+..-.. +..+..+.++ +...++..||| +|.+..|.++ .++..|.+|+.++
T Consensus 231 rVeRG~lkvg~eveivG~~~~~kttvtgvemf---rk~ld~~~AGdnvg~llRg~~r-~~veRGqvLakpg 297 (394)
T COG0050 231 RVERGILKVGEEVEIVGIKETQKTTVTGVEMF---RKLLDEGQAGDNVGVLLRGVKR-EDVERGQVLAKPG 297 (394)
T ss_pred EEeeeeeccCCEEEEecccccceeEEEhHHHH---HHHHhccccCCCcceEEEeccc-cceecceEeecCC
Confidence 99999999999999886542 2234444333 35678889999 7887777654 7899999998776
No 52
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.2e-23 Score=208.30 Aligned_cols=229 Identities=16% Similarity=0.223 Sum_probs=180.2
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHHHH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPDRV-- 93 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~~~-- 93 (547)
.....+|.+.|||||+.|..+|..+.+.||.+|++|||..|+..||++|...+.-.|++ +++.+|||||.+.+.+..
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence 44667899999999999999999999999999999999999999999999999999998 788899999988764332
Q ss_pred -HH---HHHHhcCCCCccceeccccccccccc------------cHHHHHhhCCCCCccccCceeEEEEeeec--ccccc
Q 008991 94 -KA---QLKSMFDLDPSEALLTSAKTGQGLEH------------VLPAVIERIPPPRGIINSSLRMLLLDSYY--DEYKG 155 (547)
Q Consensus 94 -~~---~i~~~l~~~~~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~--d~~~G 155 (547)
.+ .+.+.+++....++++||+.|.||.. |++.| +.+........+||++.|..+.. ..++|
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~L-E~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRG 240 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEIL-ETVEIADDRSAKAFRFPVQYVNRPNLDFRG 240 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHH-hhccccccccccceeeceEEecCCCCcccc
Confidence 22 23444677777899999999999854 44444 44444444567889999988864 34555
Q ss_pred EEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCC
Q 008991 156 VICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLP 235 (547)
Q Consensus 156 ~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~ 235 (547)
--|++.+|++++||.|.+.|+|+..+|++|..+. -+.+++.+|+-+.++ +.+--++..||.|+..+.++.+
T Consensus 241 --yaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~d---g~~~~A~aG~aVtl~--L~deidisRGd~i~~~~~~~~~-- 311 (431)
T COG2895 241 --YAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFD---GELAQASAGEAVTLV--LADEIDISRGDLIVAADAPPAV-- 311 (431)
T ss_pred --cceeeeccceecCCeEEEccCCCeeeEEEEeccC---CchhhccCCceEEEE--EcceeecccCcEEEccCCCcch--
Confidence 4568899999999999999999999999997765 356789999987775 4566789999999988744232
Q ss_pred CCCCCcceEEeeeccCCCCc
Q 008991 236 GFKPAKHMVFSGLYPADGSD 255 (547)
Q Consensus 236 ~~~~~~p~v~~~i~p~~~~d 255 (547)
.-++..-++.+.-.|..++.
T Consensus 312 ~~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 312 ADAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred hhhcceeEEEecCCCCCCCc
Confidence 22333456677767766654
No 53
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.91 E-value=4.3e-23 Score=231.81 Aligned_cols=205 Identities=19% Similarity=0.236 Sum_probs=164.7
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCH---HHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADP---DRV 93 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~---~~~ 93 (547)
.++.+++|||||||.+|...+..++..+|++++|||+.+|+..||.+++..+...+++ +|+++||+|+.+.+. +..
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i 180 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEI 180 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHH
Confidence 3556889999999999999999999999999999999999999999999999888864 788999999975433 233
Q ss_pred HHHHHH---hcCCCCccceeccccccccccc------------cHHHHHhhCCCCCccccCceeEEEEeeeccccccEEE
Q 008991 94 KAQLKS---MFDLDPSEALLTSAKTGQGLEH------------VLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVIC 158 (547)
Q Consensus 94 ~~~i~~---~l~~~~~~vi~~SAk~g~Gv~~------------Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~ 158 (547)
.+++.+ .+++...+++++||++|.|+.+ |++.| +.++.|....++||++.|.+++...+.+.-.
T Consensus 181 ~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~ 259 (632)
T PRK05506 181 VADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHL-ETVEIASDRNLKDFRFPVQYVNRPNLDFRGF 259 (632)
T ss_pred HHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHH-hcCCCCCCcCCCCceeeEEEEEecCCCceEE
Confidence 344443 3466556799999999999974 55555 4556665567899999998876432222225
Q ss_pred EEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCC
Q 008991 159 HVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 159 ~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~ 228 (547)
.|+|.+|+|++||+|.+.|.+...+|++|...+ .+++++.|||.+.+. +++..+++.||+|++++
T Consensus 260 ~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~---~~~~~a~aG~~v~i~--l~~~~~i~rG~vL~~~~ 324 (632)
T PRK05506 260 AGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPD---GDLDEAFAGQAVTLT--LADEIDISRGDMLARAD 324 (632)
T ss_pred EEEEecceeecCCEEEEcCCCceEEEEEEEECC---ceeCEEcCCCeEEEE--ecCccccCCccEEecCC
Confidence 699999999999999999999999999997654 568899999988875 45557899999999876
No 54
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2e-22 Score=212.93 Aligned_cols=291 Identities=27% Similarity=0.319 Sum_probs=205.7
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKS 99 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~ 99 (547)
.-.+.|||||||+-|..+..|+.+.||.++||||+.+|+++||.+.+.+++..++|+++++||||+++++++.+..++++
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~ 133 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQE 133 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred hcCCCC------ccceeccccccccccccHHHHHhhCC--CCCccccCceeEEEEeeeccccccEEEEEEEecCccccCC
Q 008991 100 MFDLDP------SEALLTSAKTGQGLEHVLPAVIERIP--PPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGD 171 (547)
Q Consensus 100 ~l~~~~------~~vi~~SAk~g~Gv~~Ll~~l~~~ip--~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd 171 (547)
. |+.+ ..++++||++|+|+++|++.+.-... .-...++.+.++.|.++.-|+++|.++.+-|++|+|++||
T Consensus 134 ~-gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD 212 (509)
T COG0532 134 Y-GLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGD 212 (509)
T ss_pred c-CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCC
Confidence 4 5543 35899999999999999998874322 2334567899999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEEEEEeecCCcccccccc---------------cCcEEEEEecccccccccccCcccCC---CCCC--
Q 008991 172 KISSAATGQAYEIVDVGIMHPELTPTGVLL---------------TGQVGYVVTGMRSTKEARIGDTLYHN---KSIV-- 231 (547)
Q Consensus 172 ~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~---------------aGdig~i~~glk~~~~~~~Gdtl~~~---~~~~-- 231 (547)
.|.........+ .+. .....++..+. ||+...++.+ .+.++.+.-+-.. ....
T Consensus 213 ~iv~g~~~g~I~--t~v--~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~---e~~A~~~~~~r~~~~~~~~~~~ 285 (509)
T COG0532 213 IIVAGGEYGRVR--TMV--DDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKD---EKKARAIAELRVVLLREAELAS 285 (509)
T ss_pred EEEEccCCCceE--Eee--hhcCCCccccCCCCCeEEeccccccccCceEEecCC---hHHHhhhhhHhhhhhhhhhhhh
Confidence 999886543322 111 11112222333 4554443322 2333333222110 0000
Q ss_pred -------CCCCCCCCCcce--EEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecC----------cccccceEEEeec
Q 008991 232 -------EPLPGFKPAKHM--VFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKET----------STALGLGFRCGFL 292 (547)
Q Consensus 232 -------~~l~~~~~~~p~--v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~----------s~~lg~~~~~Gfl 292 (547)
..+.......+. +...+.....+..+.|..+|.++.-.+-.+.+-... -.++...+.+||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigF- 364 (509)
T COG0532 286 KKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGF- 364 (509)
T ss_pred HHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHHhcCCEEEEE-
Confidence 000111111122 344445555667999999999999887766655421 113445788888
Q ss_pred ccchHHHHHHHHHHHhCCeeEEecCceeeE
Q 008991 293 GLLHMDVFHQRLEQEYGAHVISTVPTVPYI 322 (547)
Q Consensus 293 G~LHlev~~erL~~e~g~~v~~t~P~V~Yr 322 (547)
.+-.+--.+++....|+++... .|.|+
T Consensus 365 -nV~~~~~a~~~ae~~~V~I~~~--~iIY~ 391 (509)
T COG0532 365 -NVRVDPEARRLAESEGVKIRYY--DVIYK 391 (509)
T ss_pred -ecCCCHHHHHHHHhcCCcEEEc--chHHH
Confidence 3444455667777779988774 35565
No 55
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=9.7e-23 Score=213.10 Aligned_cols=201 Identities=26% Similarity=0.328 Sum_probs=169.3
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
++-.++|+|||||.-|..+..|+...+|.++|||.|.+|+.+||.+.+.+|+..++|+|+++||||.++++++++.+++.
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~ 278 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELL 278 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HhcCCC------CccceeccccccccccccHHHHHhh--CCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccC
Q 008991 99 SMFDLD------PSEALLTSAKTGQGLEHVLPAVIER--IPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKG 170 (547)
Q Consensus 99 ~~l~~~------~~~vi~~SAk~g~Gv~~Ll~~l~~~--ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~g 170 (547)
.. |+. ..+++++||++|.|++.|.+++.-. +..-..++..|+.+.|.++..|+++|.++++-|..|+|++|
T Consensus 279 ~~-gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG 357 (683)
T KOG1145|consen 279 SQ-GIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKG 357 (683)
T ss_pred Hc-CccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccc
Confidence 53 432 2468999999999999999988753 23334457899999999999999999999999999999999
Q ss_pred CEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCC
Q 008991 171 DKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHN 227 (547)
Q Consensus 171 d~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~ 227 (547)
+.+....+. .+|+.+.- -+-.+++++.||+-+-+. |++++. ..||-+...
T Consensus 358 ~vlV~G~~w--~KVr~l~D--~nGk~i~~A~Ps~pv~V~-GwkdlP--~aGD~vleV 407 (683)
T KOG1145|consen 358 SVLVAGKSW--CKVRALFD--HNGKPIDEATPSQPVEVL-GWKDLP--IAGDEVLEV 407 (683)
T ss_pred cEEEEechh--hhhhhhhh--cCCCCccccCCCCceEee-cccCCC--CCCceEEEE
Confidence 999876443 35554322 244788999999987775 887665 358876443
No 56
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.2e-21 Score=204.01 Aligned_cols=205 Identities=24% Similarity=0.309 Sum_probs=171.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-------CchhhHHHHHHHHhcCCc-EEeeeecCCCCCC
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESELT-IIPVINKIDQPTA 88 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~ 88 (547)
+...+.++|+|+|||.||..++..+...||.++||||++.| ...||.+|..+++.+|+. +|+++||||+.+|
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 45678899999999999999999999999999999999876 467999999999999988 8999999999998
Q ss_pred CHHHH---HHHHHH----hcCCCCc--cceeccccccccccc---------------cHHHHHhhCCCCCccccCceeEE
Q 008991 89 DPDRV---KAQLKS----MFDLDPS--EALLTSAKTGQGLEH---------------VLPAVIERIPPPRGIINSSLRML 144 (547)
Q Consensus 89 ~~~~~---~~~i~~----~l~~~~~--~vi~~SAk~g~Gv~~---------------Ll~~l~~~ip~p~~~~~~p~~~~ 144 (547)
+.++. ...+.. .+|+... .+++||+.+|+|+.. ||+.|-. +..|....+.||++.
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~lt 409 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLT 409 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEE
Confidence 75443 333332 2355433 689999999999854 6777755 666777788899999
Q ss_pred EEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEe-cccccccccccCc
Q 008991 145 LLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVT-GMRSTKEARIGDT 223 (547)
Q Consensus 145 v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~-glk~~~~~~~Gdt 223 (547)
|.|++..+..|..++|+|.+|.|.+||+|+++++.....|+++..- ..+...+.|||-+.+.. ++ ....+++||+
T Consensus 410 Isdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~---~~~~~~a~AGD~Vsl~L~~i-~~n~v~~g~i 485 (603)
T KOG0458|consen 410 ISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN---DEPKTWAVAGDNVSLKLPGI-LPNLVQVGDI 485 (603)
T ss_pred hhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC---CCcceeEeeCCEEEEecCcc-Chhhccccee
Confidence 9999999999999999999999999999999999999999987543 46788999999777652 22 4567889999
Q ss_pred ccC
Q 008991 224 LYH 226 (547)
Q Consensus 224 l~~ 226 (547)
++.
T Consensus 486 ~~~ 488 (603)
T KOG0458|consen 486 ADS 488 (603)
T ss_pred eec
Confidence 885
No 57
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.85 E-value=2.3e-21 Score=159.50 Aligned_cols=80 Identities=53% Similarity=0.962 Sum_probs=75.7
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceecc
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQAD 431 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 431 (547)
|||++++|.||++|+|+||++|++|||++.+++..+++++.|+|.+|++|++.+|+++|+|+|+|+|+|+++|+||+++|
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~~ 80 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRESD 80 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccCC
Confidence 89999999999999999999999999999999976656899999999999944899999999999999999999999975
No 58
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.85 E-value=2.4e-20 Score=206.38 Aligned_cols=168 Identities=27% Similarity=0.324 Sum_probs=135.5
Q ss_pred EEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC-CCCH-----------
Q 008991 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP-TADP----------- 90 (547)
Q Consensus 23 l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~-~~~~----------- 90 (547)
++|||||||.+|...+.++++.+|++++|+|+++|++.||.+++..+...++|+++++||+|+. .+..
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 6899999999999999999999999999999999999999999999988999999999999985 2210
Q ss_pred ---HHHHH-------HHHHh---cCCC------------CccceeccccccccccccHHHHHh----hCCCC-CccccCc
Q 008991 91 ---DRVKA-------QLKSM---FDLD------------PSEALLTSAKTGQGLEHVLPAVIE----RIPPP-RGIINSS 140 (547)
Q Consensus 91 ---~~~~~-------~i~~~---l~~~------------~~~vi~~SAk~g~Gv~~Ll~~l~~----~ip~p-~~~~~~p 140 (547)
..+.+ ++... .++. ..+++++||++|+|+++|++.+.. .++.+ ..+.+.|
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~ 232 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGP 232 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 11111 11111 1221 246899999999999999988864 23332 3346789
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCC--eeEEEEEEee
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQ--AYEIVDVGIM 190 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~--~~~v~~i~~~ 190 (547)
+++.|++++.+++.|++++++|.+|+|++||.|.+.+.+. ..+|+.+...
T Consensus 233 ~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~ 284 (586)
T PRK04004 233 GKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKP 284 (586)
T ss_pred eEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecC
Confidence 9999999999999999999999999999999999998765 3478777654
No 59
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.84 E-value=7.1e-21 Score=156.29 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=74.8
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|||++++|.||++|+|+||++|++|||++.+++..+++++.|+|.+|++|++ ||.++|||+|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~-~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLI-GFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHc-CcHHHHHhhCCCeEEEEEEecccEec
Confidence 8999999999999999999999999999999998765789999999999997 99999999999999999999999974
No 60
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.83 E-value=7.5e-20 Score=210.68 Aligned_cols=202 Identities=23% Similarity=0.291 Sum_probs=154.4
Q ss_pred EEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC-CCCH-----------
Q 008991 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP-TADP----------- 90 (547)
Q Consensus 23 l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~-~~~~----------- 90 (547)
++|||||||.+|...+.++++.+|++++|+|+++|++.||.+++..+...++|+++|+||+|+. +++.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~ 607 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFN 607 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhh
Confidence 7999999999999999899999999999999999999999999999999999999999999995 4431
Q ss_pred ---HHHHHHHHH----------hcCCC------------CccceeccccccccccccHHHHHhhCCC-----CCccccCc
Q 008991 91 ---DRVKAQLKS----------MFDLD------------PSEALLTSAKTGQGLEHVLPAVIERIPP-----PRGIINSS 140 (547)
Q Consensus 91 ---~~~~~~i~~----------~l~~~------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~-----p~~~~~~p 140 (547)
+.+.+++.. ..|+. ..+++++||++|+|+++|+++|....+. .....+.|
T Consensus 608 ~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~ 687 (1049)
T PRK14845 608 EQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGY 687 (1049)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCc
Confidence 222333321 12222 2478999999999999999988754332 33345789
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCC--eeEEEEEEeecC---------CcccccccccCcEEEEE
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQ--AYEIVDVGIMHP---------ELTPTGVLLTGQVGYVV 209 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~--~~~v~~i~~~~~---------~~~~v~~~~aGdig~i~ 209 (547)
+++.|.+++.+++.|+++.+.|.+|+|++||.|.+++.++ ..+|+.+....| +...++++.|+.-+-+.
T Consensus 688 ~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~ 767 (1049)
T PRK14845 688 AKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIA 767 (1049)
T ss_pred eEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEe
Confidence 9999999999999999999999999999999999998765 456665542211 12356677776655443
Q ss_pred -ecccccccccccCcccCC
Q 008991 210 -TGMRSTKEARIGDTLYHN 227 (547)
Q Consensus 210 -~glk~~~~~~~Gdtl~~~ 227 (547)
.|+ ..+..||.+.-.
T Consensus 768 a~gl---~~~~aG~~~~v~ 783 (1049)
T PRK14845 768 APGL---EEVLAGSPIRIV 783 (1049)
T ss_pred cCCc---cccCCCCeEEEe
Confidence 244 455677776543
No 61
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=2.1e-19 Score=198.29 Aligned_cols=165 Identities=25% Similarity=0.301 Sum_probs=133.7
Q ss_pred EEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC-------------
Q 008991 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD------------- 89 (547)
Q Consensus 23 l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~------------- 89 (547)
++|||||||.+|...+.++++.+|++++|+|+++|.+.||.+++..+...++|+++++||+|+....
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sa 150 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFS 150 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHH
Confidence 8899999999999999999999999999999999999999999998888999999999999996311
Q ss_pred --HHHHHH-----------HHHHhcCCC------------CccceeccccccccccccHHHHHhh----CCC-CCccccC
Q 008991 90 --PDRVKA-----------QLKSMFDLD------------PSEALLTSAKTGQGLEHVLPAVIER----IPP-PRGIINS 139 (547)
Q Consensus 90 --~~~~~~-----------~i~~~l~~~------------~~~vi~~SAk~g~Gv~~Ll~~l~~~----ip~-p~~~~~~ 139 (547)
...+.+ ++.+ .|+. ..+++++||++|+|+++|+++|... ++. .....+.
T Consensus 151 k~~~~v~~~~~~~~~~lv~~l~~-~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~ 229 (590)
T TIGR00491 151 KQEIQVQQNLDTKVYNLVIKLHE-EGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEG 229 (590)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh-cCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCC
Confidence 111111 1111 1221 2478999999999999999988643 221 2234578
Q ss_pred ceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCC--eeEEEEEE
Q 008991 140 SLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQ--AYEIVDVG 188 (547)
Q Consensus 140 p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~--~~~v~~i~ 188 (547)
|+++.|.+++.+++.|+++.+.|.+|+|++||.|.+++.+. ..+|+.+.
T Consensus 230 ~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~ 280 (590)
T TIGR00491 230 PARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALL 280 (590)
T ss_pred CeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEec
Confidence 99999999999999999999999999999999999998865 45666553
No 62
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.82 E-value=6.5e-19 Score=177.70 Aligned_cols=207 Identities=22% Similarity=0.269 Sum_probs=169.2
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC-CCHHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT-ADPDR 92 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~-~~~~~ 92 (547)
.+..+..+.|+||-||+.+...+.+++- ..|..+|+|.|++|++-.|.+|+-.+...++|+|++++|+|+.. .+...
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~ 275 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQG 275 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHH
Confidence 3445567899999999999999999886 48999999999999999999999999999999999999999954 34566
Q ss_pred HHHHHHHhcCC----C---------------------CccceeccccccccccccHHHHHhhCCCC-CccccCceeEEEE
Q 008991 93 VKAQLKSMFDL----D---------------------PSEALLTSAKTGQGLEHVLPAVIERIPPP-RGIINSSLRMLLL 146 (547)
Q Consensus 93 ~~~~i~~~l~~----~---------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p-~~~~~~p~~~~v~ 146 (547)
+.+++...+.. + -.|++.+|+.+|+|++ +|+.+...+|.. ..+...||.++|.
T Consensus 276 v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~~~d~g~flmYId 354 (527)
T COG5258 276 VVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRRWDDEGPFLMYID 354 (527)
T ss_pred HHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccccCCCCCeEEEEE
Confidence 67777666521 0 1379999999999986 566666788776 4467889999999
Q ss_pred eeeccccccEEEEEEEecCccccCCEEEEecCC----CeeEEEEEEeecCCcccccccccCcEEEEE-eccccccccccc
Q 008991 147 DSYYDEYKGVICHVAVVDGTLRKGDKISSAATG----QAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIG 221 (547)
Q Consensus 147 ~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~----~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~G 221 (547)
++|...++|+++.+.|.+|.|..||++++.|.. ...+|++|.+ +...++++.||+++.++ +|+ ..++++.|
T Consensus 355 ~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIem---h~~rvdsa~aG~iig~Al~gv-~~e~lerG 430 (527)
T COG5258 355 KIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEM---HHYRVDSAKAGSIIGIALKGV-EKEELERG 430 (527)
T ss_pred eeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEE---eeEEeccccCCcEEEEEeccc-CHHHHhcc
Confidence 999999999999999999999999999998853 2345666554 34789999999987775 343 23558999
Q ss_pred CcccCC
Q 008991 222 DTLYHN 227 (547)
Q Consensus 222 dtl~~~ 227 (547)
++++..
T Consensus 431 MVl~~~ 436 (527)
T COG5258 431 MVLSAG 436 (527)
T ss_pred eEecCC
Confidence 999765
No 63
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.81 E-value=3.6e-20 Score=154.32 Aligned_cols=79 Identities=29% Similarity=0.471 Sum_probs=75.1
Q ss_pred eecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEecccee
Q 008991 350 CWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQ 429 (547)
Q Consensus 350 llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~ 429 (547)
++|||++++|.+|++|+|+|+++|++|||++.+++..+ +++.|+|.+|++|++ ||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~~~iP~~~~~-~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG-GAQVIKAKVPLSEMF-GYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC-CcEEEEEECCHHHHh-chHHHHHHhcCCeEEEEEEeCcceE
Confidence 58999999999999999999999999999999999754 589999999999997 9999999999999999999999998
Q ss_pred c
Q 008991 430 A 430 (547)
Q Consensus 430 ~ 430 (547)
.
T Consensus 79 ~ 79 (85)
T smart00838 79 V 79 (85)
T ss_pred C
Confidence 5
No 64
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.81 E-value=3.6e-20 Score=155.63 Aligned_cols=84 Identities=39% Similarity=0.573 Sum_probs=77.2
Q ss_pred eeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccce
Q 008991 349 ACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQ 428 (547)
Q Consensus 349 ~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~ 428 (547)
+++|||++++|.+|++|+|+|+++|++|||++.+++..+++++.|+|.+|+++++ +|..+|+++|+|+|+|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~-gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELF-GFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHT-THHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhh-hHHHHhhccCCCEEEEEEEECeeE
Confidence 4899999999999999999999999999999999998756899999999999998 999999999999999999999999
Q ss_pred eccce
Q 008991 429 QADMV 433 (547)
Q Consensus 429 ~~~l~ 433 (547)
+..-.
T Consensus 80 ~~~~~ 84 (89)
T PF00679_consen 80 PVPGD 84 (89)
T ss_dssp EESHH
T ss_pred ECCCC
Confidence 96543
No 65
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.80 E-value=1.2e-19 Score=173.67 Aligned_cols=115 Identities=34% Similarity=0.500 Sum_probs=101.1
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
...+.++|||||||.+|..++.+++..+|++|+|||+.+|++.||.+++..+...++|+|+|+||+|+...+..+..+++
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~ 146 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEI 146 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999866666666666
Q ss_pred HHhc----CCC---CccceeccccccccccccHHHHHhhCCC
Q 008991 98 KSMF----DLD---PSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 98 ~~~l----~~~---~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+.+ +.. ..+++++||++|.|+++|+++|.+++|+
T Consensus 147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 147 KEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp HHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred HHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 6433 443 3589999999999999999999999985
No 66
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.80 E-value=1.1e-19 Score=148.96 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=73.7
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|||++++|.+|++|+|+|+++|++|||++.+++..+ +++.|++.+|++|++ +|.++|+++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~e~~-g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDMF-GYSTELRSMTQGKGEFSMEFSRYAPV 77 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC-CeEEEEEEECHHHhh-ChHHHHHhhCCCcEEEEEEecceEEC
Confidence 899999999999999999999999999999999755 689999999999997 99999999999999999999999985
No 67
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=7.6e-19 Score=173.92 Aligned_cols=203 Identities=24% Similarity=0.280 Sum_probs=160.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-CchhhHHHHHHHHhcCCc-EEeeeecCCCCCCC-HHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-VQAQTVANFYLAFESELT-IIPVINKIDQPTAD-PDRVKAQL 97 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~-~~~~~~~i 97 (547)
..+.|+|+|||+-+...|.++.+.-|+|+|||+|++. +|+||.+|+..+.-.++. +|++-||+|+.... ..+..+++
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHH
Confidence 4688999999999999999999999999999999987 699999999988888887 88889999996532 12223444
Q ss_pred HHhcC---CCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeec--------cccccEEEEEEEecCc
Q 008991 98 KSMFD---LDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYY--------DEYKGVICHVAVVDGT 166 (547)
Q Consensus 98 ~~~l~---~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~--------d~~~G~v~~~rV~~G~ 166 (547)
.++.. ..+.|++++||..+.||+.|+++|.+++|.|..+.++|++++|..+|- +.-.|-|.-+.+.+|.
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~ 245 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGV 245 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeee
Confidence 44432 234589999999999999999999999999999999999999999983 3456778889999999
Q ss_pred cccCCEEEEecC-----CCeeE----EEEEEeecCCcccccccccCcEEEEEecccccccccccCccc
Q 008991 167 LRKGDKISSAAT-----GQAYE----IVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLY 225 (547)
Q Consensus 167 lk~gd~v~~~~~-----~~~~~----v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~ 225 (547)
++.||+|.+.|. +.+.. .++|..+.....+++++.||-.+.+..++ ...+..+|-|+
T Consensus 246 l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~l--DP~ltKaD~L~ 311 (415)
T COG5257 246 LRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKL--DPTLTKADALV 311 (415)
T ss_pred EecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEeccc--Ccchhhhhhhc
Confidence 999999999863 22211 34555666666789999999987775544 22344455544
No 68
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=1.8e-19 Score=147.54 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=73.7
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|||++++|.+|++|+|+|+++|++|||++.+++..+ +++.|++.+|++|++ +|.++|+++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~~~~-g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQ-DYQSELPSYTHGEGVLETEFKGYRPC 77 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC-CEEEEEEEECHHHHh-hHHHHhHhhcCCeEEEEEEeCCeEEC
Confidence 899999999999999999999999999999998754 789999999999997 99999999999999999999999984
No 69
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.80 E-value=1.2e-19 Score=149.33 Aligned_cols=78 Identities=29% Similarity=0.351 Sum_probs=73.7
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcC-CcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFID-SQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~-~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|||++++|.+|++|+|+|+++|++|||.+.+++..+ ++++.|++.+|++|++ +|.++|+++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~-~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESF-GFETDLRSATSGQAFPQLVFSHWEIV 79 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHh-CcHHHHHhhCCCCcEEEEEeceeEEC
Confidence 899999999999999999999999999999998764 3469999999999997 99999999999999999999999985
No 70
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=6.7e-19 Score=175.27 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=162.9
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC-----HH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD-----PD 91 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~-----~~ 91 (547)
+++..+++|+|+|||...+..+..+....|..++|||+..|.+.||.+++..........++|+||+|....+ .+
T Consensus 66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~ 145 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIE 145 (522)
T ss_pred ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHH
Confidence 5677899999999999999999999999999999999999999999999988877777799999999975432 12
Q ss_pred HHHHHHHHhc---CCC-Cccceecccccc----ccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEe
Q 008991 92 RVKAQLKSMF---DLD-PSEALLTSAKTG----QGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVV 163 (547)
Q Consensus 92 ~~~~~i~~~l---~~~-~~~vi~~SAk~g----~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~ 163 (547)
+....++..+ +++ +.|++++||+.| +++.+|.+.|.+.+-.|..+.++||.+.|...+..++.|+|..+.|.
T Consensus 146 k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl 225 (522)
T KOG0461|consen 146 KSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVL 225 (522)
T ss_pred HHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEE
Confidence 2222233222 343 368999999999 89999999999999999999999999999999999999999999999
Q ss_pred cCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE
Q 008991 164 DGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV 209 (547)
Q Consensus 164 ~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~ 209 (547)
+|+++.|+.|.+..-+..-+|+++.+++ .++.++.+||...+.
T Consensus 226 ~G~~~ln~~iE~PAL~e~rkVKslqmf~---~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 226 RGVLRLNTEIEFPALNEKRKVKSLQMFK---QRVTSAAAGDRAGFC 268 (522)
T ss_pred EeEEecCcEEeecccchhhhhhhHHHHh---hhhhhhhcccceeee
Confidence 9999999999999888888888877665 678899999965543
No 71
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.78 E-value=3.5e-19 Score=145.93 Aligned_cols=77 Identities=36% Similarity=0.549 Sum_probs=73.5
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|||++++|.+|++|+|+|+++|++|||++.+++.. ++++.|++.+|++|++ +|.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~~~iP~~e~~-~~~~~Lr~~T~G~a~~~~~f~~y~~~ 77 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESR-GGWKVIKAEVPLAEMF-GYSTDLRSLTQGRGSFTMEFSHYEEV 77 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceecc-CCcEEEEEEcCHHHHh-ChHHHHHhhcCCeEEEEEEecceeEC
Confidence 89999999999999999999999999999999976 4689999999999997 99999999999999999999999984
No 72
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.6e-18 Score=176.07 Aligned_cols=205 Identities=21% Similarity=0.329 Sum_probs=164.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-------chhhHHHHHHHHhcCCc-EEeeeecCCCCCCC-
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-------QAQTVANFYLAFESELT-IIPVINKIDQPTAD- 89 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~- 89 (547)
....++++|+|||..|..++..+.++||.++||++|..|. ..||++|..+++..++. .|+++||||-+..+
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 4568999999999999999999999999999999997663 46999999999999987 88999999987543
Q ss_pred ----HHHHHHHHHHhc---CCC---CccceeccccccccccccHH-------------HHHhhCCCCCccccCceeEEEE
Q 008991 90 ----PDRVKAQLKSMF---DLD---PSEALLTSAKTGQGLEHVLP-------------AVIERIPPPRGIINSSLRMLLL 146 (547)
Q Consensus 90 ----~~~~~~~i~~~l---~~~---~~~vi~~SAk~g~Gv~~Ll~-------------~l~~~ip~p~~~~~~p~~~~v~ 146 (547)
+++..+.+...+ |+. ...++++|+.+|.++.+..+ .+. .+|......++|++..|.
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld-~l~~~~R~~~GP~~~pI~ 313 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLD-ELPHLERILNGPIRCPVA 313 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehh-ccCcccccCCCCEEeehh
Confidence 344444444333 433 33489999999999887543 332 255566678999999999
Q ss_pred eeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCccc
Q 008991 147 DSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTLY 225 (547)
Q Consensus 147 ~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl~ 225 (547)
+-|.| .|+|..++|.||++++||.+.++|.+...+|..|+ . +..+++.+.|||.+-+- +|+ +..++..|.+||
T Consensus 314 ~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~--~-ddvE~~~~~pGenvk~rlkgi-eeedi~~GfiL~ 387 (501)
T KOG0459|consen 314 NKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIY--S-DDVETDRVAPGENVKLRLKGI-EEEDISPGFILC 387 (501)
T ss_pred hhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEe--c-ccceeeeccCCcceEEEeccc-chhhccCceEEe
Confidence 99887 57999999999999999999999999988887654 3 35788999999987764 455 347899999999
Q ss_pred CCCCC
Q 008991 226 HNKSI 230 (547)
Q Consensus 226 ~~~~~ 230 (547)
+++++
T Consensus 388 ~~~n~ 392 (501)
T KOG0459|consen 388 SPNNP 392 (501)
T ss_pred cCCCc
Confidence 98754
No 73
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.78 E-value=5.2e-19 Score=145.50 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=73.1
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcE-EEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQR-AFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~-~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
||+++++|.+|++|+|+|+++|++|||++++++..+++. ..|++++|++|++ +|.++|+|+|+|.|+|.++|+||++.
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~-~~~~~Lrs~T~G~~~~~~~f~~y~~v 79 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESF-GFETDLRVHTQGQAFCQSVFDHWQIV 79 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHh-ChHHHHHhhCCCceEEEEEeCeeeEC
Confidence 899999999999999999999999999999988655443 8999999999998 89999999999999999999999984
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.78 E-value=3.2e-18 Score=161.34 Aligned_cols=117 Identities=72% Similarity=1.145 Sum_probs=104.5
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+++++.++|||||||.+|...+.++++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+.+.+.....++
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~ 142 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQ 142 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHH
Confidence 56788999999999999999999999999999999999999999998888887778999999999999976666566677
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
+.+.+++...+++++||++|.|++++++.|.+.+|+|
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 143 IEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIPPP 179 (179)
T ss_pred HHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCCCC
Confidence 7777777555689999999999999999999999876
No 75
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.77 E-value=9.9e-19 Score=143.57 Aligned_cols=78 Identities=41% Similarity=0.605 Sum_probs=74.7
Q ss_pred cceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 352 EPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 352 EP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|||+.++|.+|++|+|+|+++|++|||++.+++..+++++.|++.+|++|++ +|.++||++|+|+|+|.++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~-g~~~~lr~~T~G~~~~~~~f~~y~~~ 78 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMF-GFATDLRSLTQGRASFSMEFSHYEPV 78 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHc-CcHHHhhhhcCCeEEEEEEecceEeC
Confidence 8999999999999999999999999999999997765799999999999997 99999999999999999999999985
No 76
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.73 E-value=2.5e-17 Score=163.42 Aligned_cols=117 Identities=38% Similarity=0.509 Sum_probs=107.3
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
..+++++++||||||.+|..++.++++.+|++++|+|+++|++.++..+|..+...++|+++|+||+|+.+++++++.++
T Consensus 60 ~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~ 139 (237)
T cd04168 60 QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQE 139 (237)
T ss_pred EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC-------------------------------------------------------------ccceeccccc
Q 008991 97 LKSMFDLDP-------------------------------------------------------------SEALLTSAKT 115 (547)
Q Consensus 97 i~~~l~~~~-------------------------------------------------------------~~vi~~SAk~ 115 (547)
+++.++..+ .|++++||.+
T Consensus 140 i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~ 219 (237)
T cd04168 140 IKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALK 219 (237)
T ss_pred HHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccC
Confidence 988875421 1589999999
Q ss_pred cccccccHHHHHhhCCCC
Q 008991 116 GQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 116 g~Gv~~Ll~~l~~~ip~p 133 (547)
+.|+..||+.|.+++|+|
T Consensus 220 ~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 220 GIGIEELLEGITKLFPTS 237 (237)
T ss_pred CcCHHHHHHHHHHhcCCC
Confidence 999999999999999987
No 77
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=6.3e-17 Score=163.39 Aligned_cols=85 Identities=40% Similarity=0.527 Sum_probs=78.7
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
.++++++|||||||.+|..++.++++.+|++++|||+.+|++.+|..+|..+...++|+++|+||+|+.+++.+...+++
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l 140 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQI 140 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHhcC
Q 008991 98 KSMFD 102 (547)
Q Consensus 98 ~~~l~ 102 (547)
++.++
T Consensus 141 ~~~l~ 145 (270)
T cd01886 141 REKLG 145 (270)
T ss_pred HHHhC
Confidence 77654
No 78
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=2.8e-16 Score=151.33 Aligned_cols=124 Identities=25% Similarity=0.352 Sum_probs=98.6
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecC
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKI 83 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKi 83 (547)
.|+|.+. ..++.+++|+|||||.+|..++.++++.+|++++|||+.+|++.||.++|..+.+.++| +|+|+||+
T Consensus 49 rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~ 128 (195)
T cd01884 49 RGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKA 128 (195)
T ss_pred cCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 4555543 34567899999999999999999999999999999999999999999999999999998 78999999
Q ss_pred CCCCCC--HHHHHHHHHHhc---CC--CCccceeccccccccc----------cccHHHHHhhCCCC
Q 008991 84 DQPTAD--PDRVKAQLKSMF---DL--DPSEALLTSAKTGQGL----------EHVLPAVIERIPPP 133 (547)
Q Consensus 84 Dl~~~~--~~~~~~~i~~~l---~~--~~~~vi~~SAk~g~Gv----------~~Ll~~l~~~ip~p 133 (547)
|+.... .+...+++.+.+ ++ ...+++++||++|.|+ ..|+++|.+..|+|
T Consensus 129 D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 129 DMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 996321 122334455443 44 3457999999999985 46788887776655
No 79
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.68 E-value=3.1e-16 Score=158.20 Aligned_cols=118 Identities=33% Similarity=0.546 Sum_probs=104.2
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKA 95 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~ 95 (547)
.+.++++++|||||||.+|..++..+++.+|++++|+|++++++.++..+|..+...++|+++++||+|+.+++...+.+
T Consensus 66 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~ 145 (267)
T cd04169 66 FEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLD 145 (267)
T ss_pred EeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999988999999999999999888877777
Q ss_pred HHHHhcCCC------------------------------------------C----------------------------
Q 008991 96 QLKSMFDLD------------------------------------------P---------------------------- 105 (547)
Q Consensus 96 ~i~~~l~~~------------------------------------------~---------------------------- 105 (547)
++++.++.. +
T Consensus 146 ~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~ 225 (267)
T cd04169 146 EIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGA 225 (267)
T ss_pred HHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhh
Confidence 777665421 0
Q ss_pred --------------ccceeccccccccccccHHHHHhhCCCC
Q 008991 106 --------------SEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 106 --------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.|++++||.++.|+..||++|.+++|+|
T Consensus 226 ~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 226 GPEFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 1489999999999999999999999987
No 80
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=1.5e-15 Score=145.75 Aligned_cols=118 Identities=39% Similarity=0.549 Sum_probs=97.7
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKA 95 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~ 95 (547)
.+++.+.+++||||||.+|...+..+++.+|++++|+|++++...++..++..+...++|+++|+||+|+...+.+...+
T Consensus 60 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~ 139 (194)
T cd01891 60 VTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVD 139 (194)
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHH
Confidence 34567899999999999999999999999999999999999888888777777777899999999999998777666666
Q ss_pred HHHHhc---C----CCCccceeccccccccc----------cccHHHHHhhCCCC
Q 008991 96 QLKSMF---D----LDPSEALLTSAKTGQGL----------EHVLPAVIERIPPP 133 (547)
Q Consensus 96 ~i~~~l---~----~~~~~vi~~SAk~g~Gv----------~~Ll~~l~~~ip~p 133 (547)
++.+.+ + ....+++++||++|.|+ ++|++.|.+++|.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 140 EVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred HHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 665554 1 11347899999999876 45788888888876
No 81
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.65 E-value=7.4e-16 Score=149.31 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=94.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-CchhhHHHHHHHHhcCC-cEEeeeecCCCCCC-CHHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-VQAQTVANFYLAFESEL-TIIPVINKIDQPTA-DPDRVKAQL 97 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~l-piIvviNKiDl~~~-~~~~~~~~i 97 (547)
..++|||||||.+|...+..+++.+|++++|+|++++ .+.++..++..+...++ |+++|+||+|+.+. +.....+++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHH
Confidence 7899999999999999999999999999999999984 67888888887777776 58999999999653 233344555
Q ss_pred HHhcC---CCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 98 KSMFD---LDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 98 ~~~l~---~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
.+.+. ....+++++||++|.|+++|++.|.+.+|.|.
T Consensus 163 ~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 163 KKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 55442 23457899999999999999999999998875
No 82
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.64 E-value=1.2e-15 Score=146.33 Aligned_cols=116 Identities=27% Similarity=0.334 Sum_probs=96.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC-CHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-DPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-~~~~~~~~i 97 (547)
+++.+++||||||.+|......+...+|++++|+|++++.+.++.+.+..+...+.|+++|+||+|+... ..+...+++
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 145 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKM 145 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 4789999999999999888888889999999999999999888887777777778999999999999643 233334444
Q ss_pred HHh----c---CCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 98 KSM----F---DLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 98 ~~~----l---~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
.+. + +....+++++||++|.|+++|++.|.+.+|+|.
T Consensus 146 ~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 146 KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 332 2 334568999999999999999999999999885
No 83
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.63 E-value=1.5e-15 Score=149.04 Aligned_cols=116 Identities=40% Similarity=0.607 Sum_probs=93.0
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC----CCHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT----ADPDRV 93 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~----~~~~~~ 93 (547)
++++.++|||||||.+|..++..+++.+|++++|+|+++|+..||..++..+...++|+++|+||+|+.. .++++.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~ 149 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEA 149 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHH
Confidence 4589999999999999999999999999999999999999999999999999888999999999999862 233222
Q ss_pred -------HHHHHHhc---C-----------CCCcc----ceeccccccccc--------cccHHHHHhhCCCC
Q 008991 94 -------KAQLKSMF---D-----------LDPSE----ALLTSAKTGQGL--------EHVLPAVIERIPPP 133 (547)
Q Consensus 94 -------~~~i~~~l---~-----------~~~~~----vi~~SAk~g~Gv--------~~Ll~~l~~~ip~p 133 (547)
.+++...+ . +...| ++++||+.|++. ..+|+.+++++|+|
T Consensus 150 ~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 150 YQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHHHHHHHHhhCCCC
Confidence 22222211 0 00113 899999999864 35899999999987
No 84
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.62 E-value=3.8e-16 Score=126.71 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=65.8
Q ss_pred CCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEec
Q 008991 239 PAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTV 316 (547)
Q Consensus 239 ~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~ 316 (547)
+|+|+++++++|.+++|+.+|.+||.+|+++||+|.+..++. +|+.+..| +|++||+|+++||+++||+++.++.
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~e--t~e~~l~g-~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEE--TGELILSG-MGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETT--TSEEEEEE-SSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcch--hceEEEEE-CCHHHHHHHHHHHHHHHCCeeEecC
Confidence 478999999999999999999999999999999999999865 47755555 7999999999999999999998863
No 85
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.62 E-value=2.3e-15 Score=151.55 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=164.9
Q ss_pred ceEEEEEeCCCccchHHHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCH-HHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADP-DRVKAQ 96 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~-~~~~~~ 96 (547)
...++|||.+||+.|...+.-++. ..|..+|+|.|..|+-..|.+|+.+|....+|+++|++|||++.++. ++.+.-
T Consensus 218 aKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqEtmKl 297 (641)
T KOG0463|consen 218 AKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQETMKL 297 (641)
T ss_pred ceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHHHHHH
Confidence 346899999999999887776665 48999999999999999999999999999999999999999988875 444555
Q ss_pred HHHhcCCC--------------------------CccceeccccccccccccHHHHHhhCCC-CCccccCceeEEEEeee
Q 008991 97 LKSMFDLD--------------------------PSEALLTSAKTGQGLEHVLPAVIERIPP-PRGIINSSLRMLLLDSY 149 (547)
Q Consensus 97 i~~~l~~~--------------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~-p~~~~~~p~~~~v~~~~ 149 (547)
+..++..+ -+|+|.+|..+|.|++-| ....+.++. .....+.|..++|.|+|
T Consensus 298 l~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL-kmFLNlls~R~~~~E~~PAeFQIDD~Y 376 (641)
T KOG0463|consen 298 LTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL-KMFLNLLSLRRQLNENDPAEFQIDDIY 376 (641)
T ss_pred HHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH-HHHHhhcCcccccccCCCcceeecceE
Confidence 55544321 137899999999998744 444455544 34466889999999999
Q ss_pred ccccccEEEEEEEecCccccCCEEEEecCC-CeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCcccCC
Q 008991 150 YDEYKGVICHVAVVDGTLRKGDKISSAATG-QAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTLYHN 227 (547)
Q Consensus 150 ~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~-~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl~~~ 227 (547)
+.|++|+|+.+...+|+++.+|.+...|.. ..+----|..++.++.++..+.+||...++ +.++. .+++.|.++.++
T Consensus 377 ~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr-~~vRKGMVmVsp 455 (641)
T KOG0463|consen 377 WVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKR-KDVRKGMVMVSP 455 (641)
T ss_pred ecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcch-hhhhcceEEecC
Confidence 999999999999999999999999998752 233322355667788899999999988765 23433 678899998876
Q ss_pred C
Q 008991 228 K 228 (547)
Q Consensus 228 ~ 228 (547)
.
T Consensus 456 ~ 456 (641)
T KOG0463|consen 456 K 456 (641)
T ss_pred C
Confidence 5
No 86
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.60 E-value=7.4e-15 Score=142.87 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=89.7
Q ss_pred CCeEEEeC-----CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecC
Q 008991 10 PGTSEAHN-----PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKI 83 (547)
Q Consensus 10 pG~T~~~~-----~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKi 83 (547)
+|+|++.. .++..++|||||||.+|..++..++..+|++++|+|++++...++..++..+...+.| +|+|+||+
T Consensus 61 rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~ 140 (208)
T cd04166 61 QGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKM 140 (208)
T ss_pred CCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEch
Confidence 67777642 3456899999999999999999999999999999999999999998888888888866 67799999
Q ss_pred CCCCCCH---HHHHHHHH---HhcCCCCccceeccccccccccc
Q 008991 84 DQPTADP---DRVKAQLK---SMFDLDPSEALLTSAKTGQGLEH 121 (547)
Q Consensus 84 Dl~~~~~---~~~~~~i~---~~l~~~~~~vi~~SAk~g~Gv~~ 121 (547)
|+.+.+. +...+++. ..++....+++++||++|.|+.+
T Consensus 141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 9976443 22333443 34565556799999999999975
No 87
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.60 E-value=7.2e-15 Score=148.54 Aligned_cols=85 Identities=39% Similarity=0.472 Sum_probs=77.9
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
.+++.+++||||||.+|..++..++..+|++++|+|++.+.+.++...|..+...++|.++|+||+|+.+++.+...+++
T Consensus 61 ~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l 140 (268)
T cd04170 61 WKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAAL 140 (268)
T ss_pred ECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999988888788888
Q ss_pred HHhcC
Q 008991 98 KSMFD 102 (547)
Q Consensus 98 ~~~l~ 102 (547)
++.++
T Consensus 141 ~~~~~ 145 (268)
T cd04170 141 QEAFG 145 (268)
T ss_pred HHHhC
Confidence 77654
No 88
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=5.9e-15 Score=145.18 Aligned_cols=114 Identities=27% Similarity=0.329 Sum_probs=95.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC-CHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-DPDRVKA 95 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-~~~~~~~ 95 (547)
.++.++|+|||||.+|..++.+++. .+|++++|+|+..|.+.++.+++..+...++|+++|+||+|+.+. ...+..+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~ 161 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLK 161 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHH
Confidence 4678999999999999999999986 799999999999999999999999999999999999999998654 3455666
Q ss_pred HHHHhcCC--------------------------CCccceeccccccccccccHHHHHhhCCCC
Q 008991 96 QLKSMFDL--------------------------DPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 96 ~i~~~l~~--------------------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
++.+.+.. ...|++.+||.+|+|+++|+..| ..+|+|
T Consensus 162 ~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L-~~lp~~ 224 (224)
T cd04165 162 DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL-NLLPLR 224 (224)
T ss_pred HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH-HhcCCC
Confidence 66665541 02378999999999999988777 566653
No 89
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.59 E-value=6.7e-15 Score=122.83 Aligned_cols=86 Identities=55% Similarity=0.985 Sum_probs=78.8
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARI 220 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~ 220 (547)
|.++||++++|++.|+++++||++|+|++||.+.+...++.+++.+|..+.++..+++++.||||+++.+|+.+++++.+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~~ 80 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDARV 80 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCcccc
Confidence 57899999999999999999999999999999999888888899999988777889999999999999877777788999
Q ss_pred cCcccC
Q 008991 221 GDTLYH 226 (547)
Q Consensus 221 Gdtl~~ 226 (547)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03699 81 GDTITL 86 (86)
T ss_pred ccEeeC
Confidence 999974
No 90
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.59 E-value=6.5e-15 Score=144.43 Aligned_cols=112 Identities=26% Similarity=0.342 Sum_probs=88.3
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCC-------CCchhhHHHHHHHHhcC-CcE
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQ-------GVQAQTVANFYLAFESE-LTI 76 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~-------g~~~qt~~~~~~~~~~~-lpi 76 (547)
.|+|++. ..+++.+++||||||.+|..++..+++.+|++++|||+++ +...++..++..+...+ .|+
T Consensus 61 rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 140 (219)
T cd01883 61 RGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQL 140 (219)
T ss_pred CccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeE
Confidence 4666653 3467899999999999999999999999999999999998 56778999888887777 468
Q ss_pred EeeeecCCCCCC-----CHHHHHHHHHHh---cCCC--Cccceeccccccccccc
Q 008991 77 IPVINKIDQPTA-----DPDRVKAQLKSM---FDLD--PSEALLTSAKTGQGLEH 121 (547)
Q Consensus 77 IvviNKiDl~~~-----~~~~~~~~i~~~---l~~~--~~~vi~~SAk~g~Gv~~ 121 (547)
++|+||+|+..+ +.+.+.+++... +++. ..+++++||++|.|+++
T Consensus 141 iivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 141 IVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred EEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 889999999742 234455555433 3333 35799999999999874
No 91
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.58 E-value=1e-14 Score=134.72 Aligned_cols=109 Identities=25% Similarity=0.305 Sum_probs=87.8
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCC-cEEeeeecCCCCCCC-HHHHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESEL-TIIPVINKIDQPTAD-PDRVKAQL 97 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l-piIvviNKiDl~~~~-~~~~~~~i 97 (547)
++.+++|||||+.+|...+..+++.||++++|+|++++...++..++..+...+. |+++++||+|+.+.+ .....+++
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~ 129 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEI 129 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHH
Confidence 5789999999999999888889999999999999999888888887776666676 899999999997542 22333444
Q ss_pred HHhcCC---CCccceeccccccccccccHHHHHh
Q 008991 98 KSMFDL---DPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 98 ~~~l~~---~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
.+.+.. ...+++++||++|.|++++++.+..
T Consensus 130 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 130 RELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 444422 3468999999999999999998754
No 92
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3.9e-15 Score=160.26 Aligned_cols=159 Identities=28% Similarity=0.378 Sum_probs=128.1
Q ss_pred EEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC-C------CCHH----
Q 008991 23 LNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP-T------ADPD---- 91 (547)
Q Consensus 23 l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~-~------~~~~---- 91 (547)
+.+||||||+.|....+++.+.||.||||||..+|+++||.+.+.+++..+.|+|+++||+|+. + +...
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lk 621 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALK 621 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence 5699999999999999999999999999999999999999999999999999999999999973 2 2221
Q ss_pred ----HHHHHHHHhc----------CCC------------CccceeccccccccccccHHHHHhhCCCCC---ccccCcee
Q 008991 92 ----RVKAQLKSMF----------DLD------------PSEALLTSAKTGQGLEHVLPAVIERIPPPR---GIINSSLR 142 (547)
Q Consensus 92 ----~~~~~i~~~l----------~~~------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~---~~~~~p~~ 142 (547)
.+.+++...+ |++ ...++++||.+|+||.+|+-.|+++..... -..-..+.
T Consensus 622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~ 701 (1064)
T KOG1144|consen 622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQ 701 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 1122222221 221 124789999999999999999998654321 11235678
Q ss_pred EEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCe
Q 008991 143 MLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQA 181 (547)
Q Consensus 143 ~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~ 181 (547)
+.|..+-..++.|+..-+-+.+|.|+.||.|.+...+..
T Consensus 702 cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~Gp 740 (1064)
T KOG1144|consen 702 CTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGP 740 (1064)
T ss_pred eEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCc
Confidence 899999999999999999999999999999999876543
No 93
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.57 E-value=2.9e-14 Score=134.79 Aligned_cols=115 Identities=45% Similarity=0.645 Sum_probs=98.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC-CCHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT-ADPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~-~~~~~~~~~i 97 (547)
....++||||||+.+|...+..+++.+|++++|+|+.++...+..+.+..+...+.|+++|+||+|+.. .+.....+++
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~ 139 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREI 139 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHH
Confidence 457899999999999999999999999999999999999888888888888888999999999999975 4444455555
Q ss_pred HHhcCC--------------CCccceeccccccccccccHHHHHhhCCCC
Q 008991 98 KSMFDL--------------DPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 98 ~~~l~~--------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.+.++. ...+++++||++|.|++++++.|.+.+|+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCCC
Confidence 554432 246799999999999999999999999865
No 94
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=4.2e-14 Score=131.38 Aligned_cols=112 Identities=36% Similarity=0.497 Sum_probs=92.8
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
.++.+++||||||.+|...+..++..+|++++|+|++++...++...+..+...++|+++|+||+|+...+.+...+.+.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 127 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELS 127 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHH
Confidence 36789999999999999989999999999999999999988888888888888999999999999998665554444443
Q ss_pred HhcC-----C-CCccceeccccccccccccHHHHHhhC
Q 008991 99 SMFD-----L-DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 99 ~~l~-----~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.... . ...+++++||++|.|+++++++|.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 128 ELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 3211 1 234789999999999999999998753
No 95
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.53 E-value=5.9e-14 Score=128.44 Aligned_cols=119 Identities=23% Similarity=0.301 Sum_probs=92.8
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccchHH--------HHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSY--------EVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~--------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
++.|++|++.. ..++.+.+|||||+.++.. ++...++.+|++++|+|+.++.+..+...+..+...+
T Consensus 26 ~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 105 (157)
T cd01894 26 EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSK 105 (157)
T ss_pred cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcC
Confidence 56788887542 2457899999999988544 5566788999999999999888777777777788889
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.|+++|+||+|+.+.+.. .+.+. .++. .+++++||++|.|+++++++|.+.+
T Consensus 106 ~piiiv~nK~D~~~~~~~--~~~~~-~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 106 KPVILVVNKVDNIKEEDE--AAEFY-SLGF--GEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred CCEEEEEECcccCChHHH--HHHHH-hcCC--CCeEEEecccCCCHHHHHHHHHhhC
Confidence 999999999999765432 22222 2333 3679999999999999999998754
No 96
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.53 E-value=4.5e-14 Score=117.00 Aligned_cols=82 Identities=28% Similarity=0.432 Sum_probs=74.3
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEeccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEAR 219 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~ 219 (547)
|.++||++++|++.|+++++||++|+|++||.|.+...++.+++.+|+.+++ +..+++++.||||+++. |+ ++++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-gl---~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT-GL---KQTR 76 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEE-CC---CCcc
Confidence 4689999999999999999999999999999999988888899999998875 67899999999999985 66 6789
Q ss_pred ccCcccC
Q 008991 220 IGDTLYH 226 (547)
Q Consensus 220 ~Gdtl~~ 226 (547)
+||||+.
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04092 77 TGDTLVT 83 (83)
T ss_pred cCCEEeC
Confidence 9999974
No 97
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.51 E-value=7.8e-14 Score=115.50 Aligned_cols=82 Identities=26% Similarity=0.424 Sum_probs=74.8
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCC-cccccccccCcEEEEEeccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE-LTPTGVLLTGQVGYVVTGMRSTKEAR 219 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~-~~~v~~~~aGdig~i~~glk~~~~~~ 219 (547)
+.++||++++|++.|+++++||++|+|++||.|.+..+++.+++.+++.+++. ..+++++.||||+++. |+ ++++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g~---~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVA-GL---KDTA 76 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEE-CC---CCCc
Confidence 46899999999999999999999999999999999988888999999999885 7899999999999985 66 5689
Q ss_pred ccCcccC
Q 008991 220 IGDTLYH 226 (547)
Q Consensus 220 ~Gdtl~~ 226 (547)
+||||++
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04088 77 TGDTLCD 83 (83)
T ss_pred cCCEeeC
Confidence 9999963
No 98
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.4e-13 Score=137.12 Aligned_cols=209 Identities=19% Similarity=0.254 Sum_probs=167.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhh--cCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC-CHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAA--CQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-DPDRVKA 95 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~--aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-~~~~~~~ 95 (547)
....++|||.+||..|...+..+|.. .|.|+|||+|..|+..-|++|+.++.+.++|++++++|+|+... ..+++.+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHH
Confidence 44578999999999999998888875 79999999999999999999999999999999999999999754 2466677
Q ss_pred HHHHhcCCC--------------------------CccceeccccccccccccHHHHHhhCCCCCc------cccCceeE
Q 008991 96 QLKSMFDLD--------------------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRG------IINSSLRM 143 (547)
Q Consensus 96 ~i~~~l~~~--------------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~------~~~~p~~~ 143 (547)
++...+... ..|++.+|..+|+|++- +..+.+.+++-.. -...|..+
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fLn~Lsp~~~~~e~~~L~q~~~eF 405 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFLNCLSPAGTAEERIQLVQLPAEF 405 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHHhhcCCcCChHHHHHHhcCccee
Confidence 776655211 13689999999999874 4445565554322 12457788
Q ss_pred EEEeeeccccccEEEEEEEecCccccCCEEEEecCC-CeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccC
Q 008991 144 LLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATG-QAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGD 222 (547)
Q Consensus 144 ~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~-~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gd 222 (547)
.|.++|..|.+|.++-+.+.+|.++.|+.+.+.|.. ..+.--.++.++.++.++..+.|||-..+..+.-+...++.|+
T Consensus 406 qvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GM 485 (591)
T KOG1143|consen 406 QVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGM 485 (591)
T ss_pred eHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcce
Confidence 999999999999999999999999999999998753 3333333677777888999999999998876655566678888
Q ss_pred cccCCC
Q 008991 223 TLYHNK 228 (547)
Q Consensus 223 tl~~~~ 228 (547)
++....
T Consensus 486 Vl~~~~ 491 (591)
T KOG1143|consen 486 VLAEID 491 (591)
T ss_pred EEeecC
Confidence 887655
No 99
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.50 E-value=1.6e-13 Score=138.99 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=91.2
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccch--------HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDF--------SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df--------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
|+.||||++. ...+.++.||||||+.+. ...+..++..+|++++|+|++++...+ ..++..+...+
T Consensus 29 s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~ 107 (270)
T TIGR00436 29 SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLK 107 (270)
T ss_pred CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcC
Confidence 7889999864 234467999999998542 223556788999999999999876554 44555666778
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.|+++|+||+|+.. .+...+.+...... ...+++++||++|.|+++|++.|.+.+|+
T Consensus 108 ~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 108 RPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 99999999999963 33333333332222 12378999999999999999999999876
No 100
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.49 E-value=9.1e-14 Score=145.41 Aligned_cols=120 Identities=27% Similarity=0.326 Sum_probs=98.8
Q ss_pred CCCCCeEEEeCC-----CceEEEEEeCCCccchH---------HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 7 LNGPGTSEAHNP-----SSFLLNLIDTPGHVDFS---------YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 7 s~~pG~T~~~~~-----~~~~l~liDTPGh~df~---------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
+++||||||... .+..|.+|||+|..+.. .++..++..||.+|+|||+.+|+.++.......++..
T Consensus 32 ~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~ 111 (444)
T COG1160 32 SDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS 111 (444)
T ss_pred ecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 689999999743 45678999999997533 3456778889999999999999999999999999988
Q ss_pred CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 73 ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+.|+|+|+||+|-... + +...+.+.+...+.+++||..|.|+.+|++++++.+|
T Consensus 112 ~kpviLvvNK~D~~~~--e---~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 112 KKPVILVVNKIDNLKA--E---ELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred CCCEEEEEEcccCchh--h---hhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 8999999999997532 2 2233444444457899999999999999999999997
No 101
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.3e-14 Score=137.62 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=148.0
Q ss_pred EEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-CchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCH-HHHHHHHH
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-VQAQTVANFYLAFESELT-IIPVINKIDQPTADP-DRVKAQLK 98 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~-~~~~~~i~ 98 (547)
.+.|+|+|||.-+...|..+.+..|+|+|++.+++. +|+||.+|+....-++++ ++++-||+|+...+. .+..+++.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~ 205 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQ 205 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHH
Confidence 568999999999999999999999999999999876 799999999888777877 778889999965432 22233444
Q ss_pred Hhc---CCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeee--------ccccccEEEEEEEecCcc
Q 008991 99 SMF---DLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSY--------YDEYKGVICHVAVVDGTL 167 (547)
Q Consensus 99 ~~l---~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~--------~d~~~G~v~~~rV~~G~l 167 (547)
... .....|++++||--+.|++.+.+.|+..+|-|..+...|.+..|..+| .+.-.|-++-+.+..|.|
T Consensus 206 kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvl 285 (466)
T KOG0466|consen 206 KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVL 285 (466)
T ss_pred HHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhh
Confidence 333 234568999999999999999999999999999999999999999887 345678889999999999
Q ss_pred ccCCEEEEecC------CCeeEEEEE----EeecCCcccccccccCcEEEE
Q 008991 168 RKGDKISSAAT------GQAYEIVDV----GIMHPELTPTGVLLTGQVGYV 208 (547)
Q Consensus 168 k~gd~v~~~~~------~~~~~v~~i----~~~~~~~~~v~~~~aGdig~i 208 (547)
+.||.|.+.|. ....+++-+ ..+..++.+.+.+.||-...+
T Consensus 286 kvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 286 KVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGV 336 (466)
T ss_pred hcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeee
Confidence 99999998763 223444433 234455667788888875544
No 102
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=2.8e-13 Score=132.22 Aligned_cols=116 Identities=33% Similarity=0.527 Sum_probs=92.8
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC---------
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA--------- 88 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~--------- 88 (547)
++.+.+++||||||.+|...+..++..+|++++|+|+.++.+.++..++..+...+.|+++|+||+|+...
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~ 147 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA 147 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence 45689999999999999999999999999999999999999888888888887788999999999998521
Q ss_pred --CHHHHHHHHHHh---cCCC--------Cccceecccccccccc--------ccHHHHHhhCCCC
Q 008991 89 --DPDRVKAQLKSM---FDLD--------PSEALLTSAKTGQGLE--------HVLPAVIERIPPP 133 (547)
Q Consensus 89 --~~~~~~~~i~~~---l~~~--------~~~vi~~SAk~g~Gv~--------~Ll~~l~~~ip~p 133 (547)
...+..+++... ++.. ..++++.||+.++++. +|++.|.+.+|+|
T Consensus 148 ~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 148 YFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCCC
Confidence 111122222222 2221 2247899999999988 8999999999987
No 103
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.48 E-value=1.6e-13 Score=113.23 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=72.7
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCC-cccccccccCcEEEEEeccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPE-LTPTGVLLTGQVGYVVTGMRSTKEAR 219 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~-~~~v~~~~aGdig~i~~glk~~~~~~ 219 (547)
|.++||++.+|++ |+++++||++|+|++||.|.+.++++.+++.+++.+.+. +.+++++.||||+++. |+ + ++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~-g~---~-~~ 74 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF-GI---D-CA 74 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEE-CC---C-cc
Confidence 5689999999988 999999999999999999999998999999999999985 7899999999999975 65 4 89
Q ss_pred ccCcccC
Q 008991 220 IGDTLYH 226 (547)
Q Consensus 220 ~Gdtl~~ 226 (547)
+||||++
T Consensus 75 ~Gdtl~~ 81 (81)
T cd04091 75 SGDTFTD 81 (81)
T ss_pred cCCEecC
Confidence 9999963
No 104
>PTZ00099 rab6; Provisional
Probab=99.47 E-value=1.4e-13 Score=130.36 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=89.1
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCC--
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~-- 88 (547)
..+++.+.++||||||+..|...+..+++.||++|+|+|+++..+.+....|. .... .++|+++|+||+|+...
T Consensus 23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 102 (176)
T PTZ00099 23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRK 102 (176)
T ss_pred EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence 45677899999999999999999999999999999999999977666654443 2222 35789999999999643
Q ss_pred -CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 89 -DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 89 -~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
..++. ..+...++ ..++++||++|.||+++|++|++.+|...
T Consensus 103 v~~~e~-~~~~~~~~---~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 103 VTYEEG-MQKAQEYN---TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCHHHH-HHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 22222 22233333 35789999999999999999999887643
No 105
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-13 Score=128.39 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=96.0
Q ss_pred EEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcEEeeeecCCCCCC
Q 008991 13 SEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTIIPVINKIDQPTA 88 (547)
Q Consensus 13 T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpiIvviNKiDl~~~ 88 (547)
|.+.+|+..++++|||+|+++|...+..+++.|+|+|+|+|.++..+++....|..-.. .++|.++|.||+|+.+.
T Consensus 50 t~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 50 TVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred EeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 44668999999999999999999999999999999999999999999999887754433 36899999999999765
Q ss_pred CH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 89 DP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+. .+..+++...++.++ ++++|||++.||++.|..|...+
T Consensus 130 ~~v~~~~a~~fa~~~~~~~--f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 130 RVVSTEEAQEFADELGIPI--FLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred eecCHHHHHHHHHhcCCcc--eeecccCCccCHHHHHHHHHHHH
Confidence 42 333455666565532 89999999999999999988755
No 106
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.47 E-value=2e-13 Score=132.28 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=88.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++|||+|+..|...+..+++.||++|+|+|+++..+.+....|..... .++|+++|+||+|+...+.
T Consensus 43 ~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 43 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred EECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 446677999999999999999999999999999999999999888888766654322 3689999999999964321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
....+++.+.. ....++++||++|.||+++|+++++.+
T Consensus 123 v~~~~~~~~a~~~--~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 123 ISRQQGEKFAQQI--TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred cCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 12223333222 123689999999999999999998755
No 107
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.47 E-value=2.9e-13 Score=124.93 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=85.1
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHH------hcCCcEEee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAF------ESELTIIPV 79 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~------~~~lpiIvv 79 (547)
++.|++.. +...++.+++|||||+.+|...+..++..+|++++|+|+++..+..... .+.... ..++|+++|
T Consensus 31 ~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 110 (162)
T cd04157 31 PTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF 110 (162)
T ss_pred CccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence 45565443 3446788999999999999999999999999999999999875543322 222221 247999999
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCCC-----CccceeccccccccccccHHHHHh
Q 008991 80 INKIDQPTADPDRVKAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 80 iNKiDl~~~~~~~~~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
+||+|+.++... +++.+.+++. +.+++++||++|.|+++++++|.+
T Consensus 111 ~NK~Dl~~~~~~---~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 111 ANKMDLPDALTA---VKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EeCccccCCCCH---HHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 999999765322 2222222221 235899999999999999999864
No 108
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.46 E-value=2.6e-13 Score=112.95 Aligned_cols=84 Identities=20% Similarity=0.354 Sum_probs=74.7
Q ss_pred cCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccc
Q 008991 138 NSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTK 216 (547)
Q Consensus 138 ~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~ 216 (547)
++||.++||++.+|++.|+++++||++|+|++||.+.+.. ++..++.++..+++ +..+++++.||||+++. |+ +
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~-gl---~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILT-GL---K 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEE-CC---C
Confidence 4689999999999999999999999999999999998876 66678999988887 57889999999999886 65 6
Q ss_pred cccccCcccC
Q 008991 217 EARIGDTLYH 226 (547)
Q Consensus 217 ~~~~Gdtl~~ 226 (547)
++.+||||++
T Consensus 76 ~~~~Gdtl~~ 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCcCccccCC
Confidence 7899999963
No 109
>COG1159 Era GTPase [General function prediction only]
Probab=99.46 E-value=2.9e-13 Score=134.72 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=101.9
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc--------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD--------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d--------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
|+.|+|||.. ..+++++.|+||||... .......++..+|.+++|+|++++........+..++..+
T Consensus 35 S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~ 114 (298)
T COG1159 35 SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTK 114 (298)
T ss_pred cCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcC
Confidence 7899999975 34688999999999743 4556778889999999999999999888888888888878
Q ss_pred CcEEeeeecCCCCCCCH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.|+++++||+|...... ....+.+...+.+ .+++++||++|.|++.|++.+..++|.
T Consensus 115 ~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f--~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 115 TPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF--KEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCeEEEEEccccCCcHHHHHHHHHHHHhhCCc--ceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 89999999999865433 2334444444443 489999999999999999999999986
No 110
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=2.5e-13 Score=126.41 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=86.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-h---cCCcEEeeeecCCCCCCCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-E---SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~lpiIvviNKiDl~~~~~-- 90 (547)
++..+.+++|||||+.+|...+...++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+...+.
T Consensus 48 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 127 (165)
T cd01864 48 EGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL 127 (165)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC
Confidence 555578999999999999999999999999999999999987777765564332 2 3789999999999965432
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+...++.+.++. .+++++||++|.|++++++.+.+.
T Consensus 128 ~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 128 FEEACTLAEKNGM--LAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHHcCC--cEEEEEECCCCCCHHHHHHHHHHh
Confidence 1223344444433 468999999999999999999865
No 111
>PRK15494 era GTPase Era; Provisional
Probab=99.46 E-value=3.8e-13 Score=140.43 Aligned_cols=124 Identities=20% Similarity=0.155 Sum_probs=92.5
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccch--------HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDF--------SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df--------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
|++||||++. ..++.+++||||||+.+. ......++..||++++|+|+.++....+..++..+...+
T Consensus 81 s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~ 160 (339)
T PRK15494 81 TPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLN 160 (339)
T ss_pred cCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5788998754 234678999999998542 222334578999999999998877766666666667778
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.|.|+|+||+|+.+.......+.+.... ...+++++||++|.|+++++++|.+.+|.
T Consensus 161 ~p~IlViNKiDl~~~~~~~~~~~l~~~~--~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 161 IVPIFLLNKIDIESKYLNDIKAFLTENH--PDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CCEEEEEEhhcCccccHHHHHHHHHhcC--CCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 8989999999997544333333333221 22478999999999999999999999875
No 112
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.45 E-value=5.6e-13 Score=123.30 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=85.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-H----hcCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-F----ESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~----~~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.+++|||||+.+|...+...+..+|++++|+|+++..+.+....|... . ..++|+++++||+|+.....
T Consensus 45 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~ 124 (164)
T cd04145 45 IDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK 124 (164)
T ss_pred ECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce
Confidence 456667899999999999999999999999999999999987666554444322 1 24789999999999965421
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....++.+.++ .+++++||++|.|++++|+.|+..+
T Consensus 125 ~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 125 VSREEGQELARKLK---IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ecHHHHHHHHHHcC---CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 112233333333 3789999999999999999998754
No 113
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.44 E-value=4.3e-13 Score=129.73 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=88.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh--cCCcEEeeeecCCCCCCCHHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE--SELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~lpiIvviNKiDl~~~~~~~ 92 (547)
.+++.+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+....|.. +.. .++|+++|+||+|+.......
T Consensus 39 ~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~ 118 (200)
T smart00176 39 TNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA 118 (200)
T ss_pred ECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH
Confidence 35677899999999999999999999999999999999999888877665644 333 478999999999985432211
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
...++.... ..+++++||++|.||+++|++|+..+.
T Consensus 119 ~~~~~~~~~---~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 119 KSITFHRKK---NLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred HHHHHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111233333 347899999999999999999997663
No 114
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.43 E-value=6.5e-13 Score=110.76 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=70.5
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCC---CeeEEEEEEeecC-CcccccccccCcEEEEEecccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATG---QAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTK 216 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~---~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~ 216 (547)
|+++||++++|++.|+++++||++|+|++||+|++...+ +..++.++..+.+ +..+++++.||||+.+. |+ +
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~-gl---~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA-GI---E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE-CC---C
Confidence 579999999999999999999999999999999988763 2567888866664 67899999999999765 55 6
Q ss_pred cccccCcccC
Q 008991 217 EARIGDTLYH 226 (547)
Q Consensus 217 ~~~~Gdtl~~ 226 (547)
++.+||||++
T Consensus 77 ~~~~Gdtl~~ 86 (86)
T cd03691 77 DITIGDTICD 86 (86)
T ss_pred CCcccceecC
Confidence 7899999963
No 115
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=4.5e-13 Score=144.37 Aligned_cols=124 Identities=26% Similarity=0.319 Sum_probs=96.7
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHH-----------HHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSY-----------EVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF 70 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~-----------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 70 (547)
++.||||++. ...+..+.+|||||+.++.. ....++..||++++|+|++++.+.++...+..+.
T Consensus 201 ~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR03594 201 SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLIL 280 (429)
T ss_pred CCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 6789999864 22345789999999865432 2345788999999999999999999999999998
Q ss_pred hcCCcEEeeeecCCCCC-C-CHHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhC
Q 008991 71 ESELTIIPVINKIDQPT-A-DPDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~-~-~~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+.|+++|+||+|+.. . ..++..+++.+.+.. ...+++++||++|.|++++++++.+..
T Consensus 281 ~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 281 EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999972 1 233445555555432 346899999999999999999988754
No 116
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.43 E-value=9.2e-13 Score=125.31 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=84.8
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHHh----cCCcEEeeeecCCCCCCCHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAFE----SELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~lpiIvviNKiDl~~~~~~ 91 (547)
+.+++.+++|||||+..|...+..+++.+|++|+|+|+++..+.+... .+..... .+.|+++|+||+|++++..
T Consensus 57 ~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~- 135 (181)
T PLN00223 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN- 135 (181)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC-
Confidence 456789999999999999999999999999999999999765444322 2222211 3689999999999976532
Q ss_pred HHHHHHHHhcCCCC-----ccceeccccccccccccHHHHHhhC
Q 008991 92 RVKAQLKSMFDLDP-----SEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 92 ~~~~~i~~~l~~~~-----~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+++.+.+++.. ..++++||++|+||++++++|.+.+
T Consensus 136 --~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 --AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred --HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 345555666542 1356799999999999999998765
No 117
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.42 E-value=7e-13 Score=123.22 Aligned_cols=112 Identities=20% Similarity=0.284 Sum_probs=87.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHhc--CCcEEeeeecCCCCCCCHHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFES--ELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~--~lpiIvviNKiDl~~~~~~~ 92 (547)
.++..+.+++|||||+..|...+..+++.+|++++|+|++++.+.+....|.. ..+. ++|+++|+||+|+......+
T Consensus 44 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~ 123 (161)
T cd04124 44 FEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQK 123 (161)
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHH
Confidence 46677899999999999999999999999999999999998877777655533 3333 78999999999985432211
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..++.+..+ .+++++||++|.|++++++.+.+.+.
T Consensus 124 -~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 124 -KFNFAEKHN---LPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred -HHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222223232 47899999999999999999987654
No 118
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.42 E-value=1e-12 Score=141.63 Aligned_cols=122 Identities=25% Similarity=0.324 Sum_probs=97.5
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCcc--------chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHV--------DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~--------df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++.. ..+..+++|||||+. .+...+..++..||++++|+|+.++........+..+.+.+
T Consensus 28 ~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~ 107 (429)
T TIGR03594 28 SDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG 107 (429)
T ss_pred cCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 57899998652 245679999999983 35556777889999999999999999998888888888889
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.|+++|+||+|+.+.+.. ..++. .+++ .+++++||++|.|+.++++++.+.++..
T Consensus 108 ~piilVvNK~D~~~~~~~--~~~~~-~lg~--~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 108 KPVILVANKIDGKKEDAV--AAEFY-SLGF--GEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred CCEEEEEECccCCccccc--HHHHH-hcCC--CCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 999999999998654321 22222 2333 4689999999999999999999998764
No 119
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.4e-13 Score=124.74 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=93.7
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCC-c---EEeeeecCCCCCCC
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESEL-T---IIPVINKIDQPTAD 89 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l-p---iIvviNKiDl~~~~ 89 (547)
...++..++|.||||+|++.|.....-+++.|++||+|+|.++..+++....|..-..... | +.+|.||+|+.+.+
T Consensus 47 v~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 47 VTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR 126 (200)
T ss_pred EEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence 3456778999999999999999999999999999999999999999999887755444332 3 66799999997633
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCc
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRG 135 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~ 135 (547)
. .+-.+...+.-+ ..++++|||||.||+++|..|.+.+|....
T Consensus 127 ~V~~~ea~~yAe~~g---ll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 127 EVEFEEAQAYAESQG---LLFFETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred cccHHHHHHHHHhcC---CEEEEEecccccCHHHHHHHHHHhccCccc
Confidence 2 111233344334 368999999999999999999999987653
No 120
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.41 E-value=1.3e-12 Score=121.22 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=86.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.+++|||||+..|...+..+++.+|++++|+|.++..+.+....| .... ..++|+++|+||+|+....
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (164)
T cd04175 43 EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 122 (164)
T ss_pred EECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhcc
Confidence 3466678899999999999999999999999999999999877666554433 2222 2468999999999996532
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. ....+++.+.++ .+++++||++|.|++++++++++.+
T Consensus 123 ~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 123 VVGKEQGQNLARQWG---CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEcHHHHHHHHHHhC---CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1 122344544454 3789999999999999999998754
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.41 E-value=1e-12 Score=122.21 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=80.8
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHH----hcCCcEEeeeecCCCCCCCH-HH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAF----ESELTIIPVINKIDQPTADP-DR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~----~~~lpiIvviNKiDl~~~~~-~~ 92 (547)
.+..+++||||||.+|...+...++.+|++++|+|+++....... ..+.... ..++|+++++||+|+..... ++
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~ 127 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEE 127 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHH
Confidence 468899999999999999999999999999999999875433322 2222222 24799999999999976532 22
Q ss_pred HHHHHHHh---cCCCCccceeccccccccccccHHHHHh
Q 008991 93 VKAQLKSM---FDLDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 93 ~~~~i~~~---l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
..+.+... .+....+++++||++|.|+++++++|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 128 IKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 22222221 2233457999999999999999999875
No 122
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.41 E-value=1.2e-12 Score=125.53 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=89.8
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh--cCCcEEeeeecCCCCCCCH-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE--SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~lpiIvviNKiDl~~~~~- 90 (547)
..++..+.++||||||+.+|...+..+++.+|++|||+|.++..+.+....|.. +.. .+.|+|+|.||+|+...+.
T Consensus 49 ~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v 128 (189)
T cd04121 49 LLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQV 128 (189)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCC
Confidence 446777999999999999999999999999999999999999888877665533 322 3789999999999965321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+..+++.+..+ .+++++||++|.||+++|+.|++.+.
T Consensus 129 ~~~~~~~~a~~~~---~~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 129 ATEQAQAYAERNG---MTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred CHHHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 222344444444 37899999999999999999997553
No 123
>PTZ00369 Ras-like protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=125.12 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=88.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-----hcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....|.... ..++|+++|+||+|+.+.+
T Consensus 47 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 47 VIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126 (189)
T ss_pred EECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 35677889999999999999999999999999999999999877666655554322 2378999999999986542
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
. .....++.+.++ .+++++||++|.|++++|++|++.+..
T Consensus 127 ~i~~~~~~~~~~~~~---~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 127 QVSTGEGQELAKSFG---IPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred ccCHHHHHHHHHHhC---CEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 2 112233334444 378999999999999999999987643
No 124
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=1.7e-12 Score=141.57 Aligned_cols=121 Identities=26% Similarity=0.323 Sum_probs=93.8
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccc--------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVD--------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~d--------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++.. ..+..++||||||+.. +...+..++..||++|+|+|++++.+.....++..+...+
T Consensus 67 ~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~ 146 (472)
T PRK03003 67 EDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSG 146 (472)
T ss_pred cCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 57899998753 2346789999999863 4455667889999999999999998877777777777889
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.|+++|+||+|+.....+ ..++. .+++. ..+++||++|.|+++|+++|++.++.
T Consensus 147 ~piilV~NK~Dl~~~~~~--~~~~~-~~g~~--~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 147 KPVILAANKVDDERGEAD--AAALW-SLGLG--EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCEEEEEECccCCccchh--hHHHH-hcCCC--CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 999999999999654322 12221 23442 34799999999999999999998866
No 125
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.40 E-value=8e-13 Score=123.70 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=86.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh---cCCcEEeeeecCCCCCCCHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE---SELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~lpiIvviNKiDl~~~~~~~~ 93 (547)
++..+.+.+|||||+.+|.......+..+|++|+|+|++++.+.+....|..... .++|+++|+||+|+........
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~ 124 (166)
T cd00877 45 NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAK 124 (166)
T ss_pred CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHH
Confidence 4567899999999999998888888999999999999999877777665533322 2799999999999974432221
Q ss_pred HHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 94 KAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 94 ~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..++.+. ...+++++||++|.|++++++.|++.+.
T Consensus 125 ~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 125 QITFHRK---KNLQYYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred HHHHHHH---cCCEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 2222222 2347899999999999999999997763
No 126
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.40 E-value=1.6e-12 Score=120.07 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=85.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.++||||||+.+|...+..+++.+|++++|+|.++..+.+....|. .... .++|+++|+||+|+...+
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 43 EVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred EECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 34666788999999999999999999999999999999998866655544442 2222 368999999999986432
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. .....++.+.++ .+++++||++|.|++++++++++.+
T Consensus 123 ~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 123 VVSREEGQALARQWG---CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred eecHHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 1 222334444444 4789999999999999999998754
No 127
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.1e-12 Score=124.08 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=100.1
Q ss_pred CeEEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcEEeeeecCCCC
Q 008991 11 GTSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTIIPVINKIDQP 86 (547)
Q Consensus 11 G~T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpiIvviNKiDl~ 86 (547)
+.|.+.++....+++|||.|++.|......+++.|++++||+|.++..+......|....+ .++|+++|.||+|+.
T Consensus 51 ~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 51 IKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred EEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 3567778999999999999999999999999999999999999999999888777754433 278899999999997
Q ss_pred CCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 87 TAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 87 ~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
..+ ..+.-+.+...+|. .++++|||+|.||++.|-.|++.+..
T Consensus 131 ~~R~V~~e~ge~lA~e~G~---~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 131 EKRQVSKERGEALAREYGI---KFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ccccccHHHHHHHHHHhCC---eEEEccccCCCCHHHHHHHHHHHHHh
Confidence 643 24445677777776 67999999999999999999887654
No 128
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.40 E-value=1.4e-12 Score=122.98 Aligned_cols=114 Identities=17% Similarity=0.265 Sum_probs=88.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HH----hcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AF----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~----~~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.++||||||..+|...+..++..+|++++|+|.++..+.++...|.. .. ..++|+++|+||+|+.+..
T Consensus 44 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~ 123 (172)
T cd04141 44 RIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR 123 (172)
T ss_pred EECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC
Confidence 446777899999999999999999999999999999999999888888664432 22 2468999999999986432
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
. .+...++.+..+ .+++++||++|.||+++|++|+..+-
T Consensus 124 ~v~~~~~~~~a~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 124 QVTTEEGRNLAREFN---CPFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred ccCHHHHHHHHHHhC---CEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 112233433343 37899999999999999999987653
No 129
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.40 E-value=1.4e-12 Score=121.57 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=88.2
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+.+|||||+.+|...+...++.+|++++|+|.++..+.+....|.. ... .+.|+++|+||+|+.+...
T Consensus 44 ~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 44 FRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV 123 (165)
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccc
Confidence 345667899999999999999999999999999999999988766665555433 222 3678999999999965432
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+..+++.+.+++ +++++||++|.|++++++.+++.++
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 124 VSSERGRQLADQLGF---EFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred cCHHHHHHHHHHcCC---EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2223445555554 6899999999999999999987654
No 130
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.40 E-value=1.2e-12 Score=124.02 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=89.5
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHH-HHHHh--cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANF-YLAFE--SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~--~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.++||||+|+.+|......+++.+|++|+|+|.++..+.+.. ..| ..... .++|+++|+||+|+.+..
T Consensus 43 ~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (176)
T cd04133 43 SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQ 122 (176)
T ss_pred EECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChh
Confidence 3467789999999999999999898999999999999999998888875 444 33332 478999999999995421
Q ss_pred -----------HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 -----------PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 -----------~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
..+..+++.+.++. .+++++||++|.||+++|+.+++.+..
T Consensus 123 ~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 123 YLADHPGASPITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred hhhhccCCCCCCHHHHHHHHHHcCC--CEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 12223344444432 258999999999999999999986543
No 131
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.39 E-value=1.7e-12 Score=121.03 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=87.6
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh---cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE---SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++|||||+..|...+...++.+|++++|+|+++..+.+....|... .. .+.|+++|+||+|+.+...
T Consensus 45 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~ 124 (166)
T cd04122 45 EVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD 124 (166)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 4566778999999999999999999999999999999999998777776666432 22 3678999999999965431
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+...++.+..+ .+++++||++|.|++++|+.++..+
T Consensus 125 ~~~~~~~~~~~~~~---~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 125 VTYEEAKQFADENG---LLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cCHHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 122233333333 4789999999999999999988654
No 132
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.39 E-value=2.3e-12 Score=119.45 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=86.7
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-H----hcCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-F----ESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~----~~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.+++|||||+.+|...+...+..+|++++|+|+++..+.+....|... . ..+.|+++|+||+|+.....
T Consensus 43 ~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~ 122 (164)
T smart00173 43 IDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV 122 (164)
T ss_pred ECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce
Confidence 356678999999999999999999999999999999999987665554444322 1 23689999999999965321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
....+++.+.++ .+++++||++|.|+++++++|++.+.
T Consensus 123 ~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 123 VSTEEGKELARQWG---CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EcHHHHHHHHHHcC---CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 222333444444 47899999999999999999987654
No 133
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.39 E-value=1.9e-12 Score=124.93 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=88.0
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH--------hcCCcEEeeeecCCCCC--
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF--------ESELTIIPVINKIDQPT-- 87 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~--------~~~lpiIvviNKiDl~~-- 87 (547)
+..+.++||||||+..|...+...++.+|++++|+|.++..+.+....|.... ..++|+++|+||+|+..
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL 126 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc
Confidence 67889999999999999999999999999999999999877777665553221 14689999999999963
Q ss_pred CCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 88 ADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 88 ~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
....+..+++.+..+. .+++++||++|.|++++|++|++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~--~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 127 AKDGEQMDQFCKENGF--IGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ccCHHHHHHHHHHcCC--ceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1122223444444442 468999999999999999999987643
No 134
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.39 E-value=1.6e-12 Score=120.07 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=80.5
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHH-H---hcCCcEEeeeecCCCCCCC-H
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLA-F---ESELTIIPVINKIDQPTAD-P 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~-~---~~~lpiIvviNKiDl~~~~-~ 90 (547)
+..++.+++|||||+.+|...+..++..+|++++|+|+++..+.+. ...|... . ..+.|+++|+||+|+.++. .
T Consensus 39 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 39 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 4456899999999999999999999999999999999987543332 2333222 2 1378999999999997653 2
Q ss_pred HHHHHHHHHh-cCCCCccceeccccccccccccHHHHHh
Q 008991 91 DRVKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 91 ~~~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
.++.+.+... +.....+++++||++|.|+++++++|++
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 3222222110 1111236999999999999999999864
No 135
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.39 E-value=2.1e-12 Score=119.29 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=86.2
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh---cCCcEEeeeecCCCCCCCH--HH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE---SELTIIPVINKIDQPTADP--DR 92 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~lpiIvviNKiDl~~~~~--~~ 92 (547)
+..+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....|..... .++|+++|+||+|+..... .+
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~ 127 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNE 127 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHH
Confidence 567889999999999999999999999999999999998777776666643322 3799999999999854321 22
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
..+++.+.+++ +++++||++|.|++++++.|.+.
T Consensus 128 ~~~~~~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 128 EAEALAKRLQL---PLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHcCC---eEEEEECCCCCCHHHHHHHHHHh
Confidence 23445555554 78999999999999999998754
No 136
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.39 E-value=1.5e-12 Score=108.28 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=71.9
Q ss_pred EEEEeeec---cccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccc
Q 008991 143 MLLLDSYY---DEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEA 218 (547)
Q Consensus 143 ~~v~~~~~---d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~ 218 (547)
++||++.+ ||+.|+++++||++|+|++||.|++...++..++.+|..++. +..+++++.||||+.+. |+ +++
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~-gl---~~~ 76 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV-NP---GNF 76 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE-CC---CCc
Confidence 47999999 999999999999999999999999988887888999988877 57889999999999987 55 678
Q ss_pred cccCcccC
Q 008991 219 RIGDTLYH 226 (547)
Q Consensus 219 ~~Gdtl~~ 226 (547)
.+||||++
T Consensus 77 ~~Gdtl~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred cccCEeeC
Confidence 89999974
No 137
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.39 E-value=1.5e-12 Score=122.76 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=86.3
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh----cCCcEEeeeecCCCCCCCH--
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE----SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~----~~lpiIvviNKiDl~~~~~-- 90 (547)
+..+.+.||||||+.+|...+...++.+|++++|+|+++..+.+....|... .. .+.|+++|+||+|+.+.+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence 4568899999999999999999999999999999999987777766555432 22 3678999999999965321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+..+++.+.++. +++++||++|.|++++++.|++.+
T Consensus 140 ~~~~~~~~~~~~~---~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 EEQAKALADKYGI---PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2223555555553 689999999999999999998754
No 138
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.39 E-value=1.9e-12 Score=124.05 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=89.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHH-HHh--cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYL-AFE--SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~--~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.+++|||||+..|...+..+++.||++|+|+|.++..+.+... .|.. ... .++|+++|+||.|+.+...
T Consensus 46 ~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~ 125 (191)
T cd01875 46 VDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADT 125 (191)
T ss_pred ECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhh
Confidence 5677899999999999999998889999999999999999987777764 4543 222 4789999999999965321
Q ss_pred H-------------HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 91 D-------------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 91 ~-------------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
. +..+++.+.++ ..+++++||++|.||+++|+.+++.+..|.
T Consensus 126 ~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 126 LKKLKEQGQAPITPQQGGALAKQIH--AVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence 0 11122222222 246899999999999999999998776553
No 139
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.39 E-value=2.4e-12 Score=119.62 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=79.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHHHh----cCCcEEeeeecCCCCCCCHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLAFE----SELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~----~~lpiIvviNKiDl~~~~~~ 91 (547)
..+.+.+++|||||+..|...+..+++.||++++|+|+++..+... ...|..... .+.|+++++||+|+.+....
T Consensus 40 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 119 (159)
T cd04150 40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119 (159)
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH
Confidence 3457889999999999999999999999999999999987544333 223332221 35899999999999654321
Q ss_pred HHHHHHHHhcCCC-----CccceeccccccccccccHHHHHh
Q 008991 92 RVKAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 92 ~~~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
+++.+.++.. ...++++||++|.|+++++++|.+
T Consensus 120 ---~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 120 ---AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred ---HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 2232333321 224678999999999999999865
No 140
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.39 E-value=1.6e-12 Score=119.61 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=84.6
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHH----hcCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAF----ESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~----~~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.+++|||||+.+|...+..+++.+|++++|+|.++..+.+....|. ... ..++|+++|+||+|+.+...
T Consensus 44 ~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~ 123 (162)
T cd04138 44 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV 123 (162)
T ss_pred ECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee
Confidence 4566678999999999999999999999999999999998765555544332 222 24789999999999965321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....++.+.++ .+++++||++|.|++++++++++.+
T Consensus 124 ~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 124 SSRQGQDLAKSYG---IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred cHHHHHHHHHHhC---CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 122233333344 3789999999999999999998654
No 141
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.39 E-value=2.2e-12 Score=123.45 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=86.5
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh------cCCcEEeeeecCCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE------SELTIIPVINKIDQPTA 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~------~~lpiIvviNKiDl~~~ 88 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|.++..+......|.. ... .+.|+++|+||+|+...
T Consensus 42 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~ 121 (190)
T cd04144 42 VDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE 121 (190)
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence 45666789999999999999999999999999999999988776666544432 221 36899999999999643
Q ss_pred CH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 89 DP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 89 ~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+. .....++.+.++. +++++||++|.|++++++.+++.+-
T Consensus 122 ~~v~~~~~~~~~~~~~~---~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 122 REVSTEEGAALARRLGC---EFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred CccCHHHHHHHHHHhCC---EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 22 1222344444443 6899999999999999999998653
No 142
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.38 E-value=1.8e-12 Score=121.86 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=80.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHH----HhcCCcEEeeeecCCCCCCCHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLA----FESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~----~~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
+.+.+++|||||+..|...+..+++.+|++++|+|+++....+... ++... ...+.|+++|+||+|+.+....
T Consensus 56 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-- 133 (173)
T cd04154 56 EGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSE-- 133 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCH--
Confidence 3688999999999999999999999999999999998864443322 22222 2257899999999999764322
Q ss_pred HHHHHHhcCC-----CCccceeccccccccccccHHHHHh
Q 008991 94 KAQLKSMFDL-----DPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 94 ~~~i~~~l~~-----~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
+++.+.++. ...+++++||++|.|++++++++++
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 134 -EEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred -HHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 233333321 2347999999999999999999864
No 143
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.38 E-value=9.9e-13 Score=121.59 Aligned_cols=112 Identities=21% Similarity=0.177 Sum_probs=87.5
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-H---hcCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-F---ESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~---~~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++||||||.+|...+...++.+|++++|+|++++.+.+....|... . ..++|+++|+||+|+.....
T Consensus 43 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 122 (161)
T cd04113 43 RVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE 122 (161)
T ss_pred EECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc
Confidence 3456678999999999999999999999999999999999998877776655332 2 24789999999999964321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
......+...++ .+++++||++|.|++++++++++.
T Consensus 123 ~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 123 VTFLEASRFAQENG---LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHh
Confidence 122233344444 478999999999999999999865
No 144
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.38 E-value=2.7e-12 Score=120.50 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=80.8
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHH----hcCCcEEeeeecCCCCCCCHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAF----ESELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~----~~~lpiIvviNKiDl~~~~~~ 91 (547)
...++.+++|||||+..|...+..+++.||++++|+|+++..+.... ..|.... ..+.|+++|+||+|+.....
T Consensus 49 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~- 127 (168)
T cd04149 49 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK- 127 (168)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC-
Confidence 34678999999999999998888999999999999999886544432 3332222 24689999999999965422
Q ss_pred HHHHHHHHhcCC-----CCccceeccccccccccccHHHHHh
Q 008991 92 RVKAQLKSMFDL-----DPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 92 ~~~~~i~~~l~~-----~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
.+++.+.++. ...+++++||++|.|++++|++|.+
T Consensus 128 --~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 128 --PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred --HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1233333322 1235789999999999999999864
No 145
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.38 E-value=2.7e-12 Score=120.30 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=83.3
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHH-HHHHHh----cCCcEEeeeecCCCCCCCHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVAN-FYLAFE----SELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~lpiIvviNKiDl~~~~~~ 91 (547)
+..++.+++|||||+.+|...+...+..+|++++|+|+++..+...... +..... .+.|+++|+||+|+......
T Consensus 39 ~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 39 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 4467899999999999999999999999999999999988644443333 222221 24799999999999754222
Q ss_pred HHHHHHHHhcCC---CCccceeccccccccccccHHHHHhhCCC
Q 008991 92 RVKAQLKSMFDL---DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 92 ~~~~~i~~~l~~---~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+..+++....+. ....++++||++|.||+++|++|.+.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 222222222221 12357889999999999999999987654
No 146
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.37 E-value=3.6e-12 Score=118.07 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=85.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.++||||||+..|...+..++..+|++++|+|.++..+.+....|. .... .++|+++|+||+|+....
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~ 122 (163)
T cd04176 43 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122 (163)
T ss_pred EECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence 34666788999999999999999999999999999999999876655544442 2222 479999999999985432
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. ......+...++ .+++++||++|.|++++++++++.+
T Consensus 123 ~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 123 EVSSAEGRALAEEWG---CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ccCHHHHHHHHHHhC---CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 1 112344444444 3789999999999999999998754
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.36 E-value=2.5e-12 Score=118.06 Aligned_cols=119 Identities=21% Similarity=0.229 Sum_probs=85.8
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccchHHH------HHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSYE------VSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~~------~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++.. ..+..+++|||||+.+|... +...+. .+|++++|+|+.... +....+..+...+
T Consensus 24 ~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~ 101 (158)
T cd01879 24 GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELG 101 (158)
T ss_pred cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcC
Confidence 45688777642 23467899999999887642 344454 899999999998742 2334455566689
Q ss_pred CcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 74 LTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 74 lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+|+++|+||+|+.+.+ .....+.+...++ .+++++||++|.|+.++++.+.+..
T Consensus 102 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 102 LPVVVALNMIDEAEKRGIKIDLDKLSELLG---VPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred CCEEEEEehhhhcccccchhhHHHHHHhhC---CCeEEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999996543 2222344555444 3789999999999999999997753
No 148
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.36 E-value=2.7e-12 Score=122.13 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=82.0
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-----HHHHhcCCcEEeeeecCCCCCCC-HH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-----YLAFESELTIIPVINKIDQPTAD-PD 91 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-----~~~~~~~lpiIvviNKiDl~~~~-~~ 91 (547)
+..+.+++|||||+..|...+...+..||++++|+|+++....+....| ......++|+++|+||+|+.... .+
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~ 128 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVS 128 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHH
Confidence 3568999999999999999898889999999999999886443332222 22233579999999999986532 22
Q ss_pred HHHHHHHHhcCC---CCccceeccccccccccccHHHHHhhCC
Q 008991 92 RVKAQLKSMFDL---DPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 92 ~~~~~i~~~l~~---~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+ .+.+...... ...+++++||++|.|+++++++|.+.+.
T Consensus 129 ~-~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 129 E-VEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred H-HHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 2 2222221111 1235789999999999999999987663
No 149
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.2e-12 Score=119.25 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=91.6
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHhc---CCcEEeeeecCCCCCCC
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFES---ELTIIPVINKIDQPTAD 89 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~---~lpiIvviNKiDl~~~~ 89 (547)
..++++.+++++|||.||+.|...+..+++.+.|||||+|.+...++..+..|.. ++++ |..++++.||+||...+
T Consensus 48 ~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 48 VTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred EEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 4568899999999999999999999999999999999999999988888777644 3333 56699999999997654
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. ++--+.+.+..|+ .+.++||++++||++.|......+
T Consensus 128 ~Vs~EEGeaFA~ehgL---ifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 128 EVSKEEGEAFAREHGL---IFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred cccHHHHHHHHHHcCc---eeehhhhhhhhhHHHHHHHHHHHH
Confidence 2 2223445555565 567999999999999888776654
No 150
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.36 E-value=3.4e-12 Score=118.70 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=85.7
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh---cCCcEEeeeecCCCCCCCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE---SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~lpiIvviNKiDl~~~~~-- 90 (547)
++..+.+++|||||+.+|...+...++.+|++++|+|+++..+.+....|... .. .++|+++|+||+|+.....
T Consensus 47 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~ 126 (166)
T cd01869 47 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD 126 (166)
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC
Confidence 55678899999999999999999999999999999999987666665555433 22 3689999999999865431
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+....+.+.++ .+++++||++|.|++++++.|.+.+
T Consensus 127 ~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 127 YSEAQEFADELG---IPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHcC---CeEEEEECCCCcCHHHHHHHHHHHH
Confidence 122334444444 3789999999999999999998754
No 151
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.36 E-value=1.8e-12 Score=121.09 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=86.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-h---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-E---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.+++|||||+.+|...+...++.+|++++|+|++++.+.+....|.... . .+.|+++|+||+|+.+.+
T Consensus 47 ~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~ 126 (167)
T cd01867 47 LDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVV 126 (167)
T ss_pred ECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCC
Confidence 4566789999999999999999989999999999999999877766655554332 2 368999999999997532
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+...++.+.++ .+++++||++|.|++++|+.+.+.+
T Consensus 127 ~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 127 SKEEGEALADEYG---IKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1112233333333 3789999999999999999998754
No 152
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.36 E-value=2.6e-12 Score=123.00 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=88.3
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.++||||||+.+|...+...+..+|++++|+|+++..+.+....|. .+.+ .++|+++|+||+|+...+
T Consensus 44 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~ 123 (191)
T cd04112 44 TVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV 123 (191)
T ss_pred EECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc
Confidence 34666789999999999999988888999999999999998876655544443 2322 368999999999995322
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.....+.+...++ .+++++||++|.|+++++++|++.++..
T Consensus 124 ~~~~~~~~l~~~~~---~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 124 VKREDGERLAKEYG---VPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred cCHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1222344444444 3789999999999999999999877543
No 153
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.36 E-value=2.8e-12 Score=123.57 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=85.0
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHH----hcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAF----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~----~~~lpiIvviNKiDl~~~~ 89 (547)
.+.+..+.++||||||+.+|......++..||++++|+|+++..+.+....|. ... ..++|+++|+||+|+....
T Consensus 41 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 41 EVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred EECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 34555688999999999999988888999999999999999876655544442 222 2479999999999996531
Q ss_pred HHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhCCC
Q 008991 90 PDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.....++..+.... ...+++++||++|.|++++++++++.+..
T Consensus 121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 11111111111111 12367899999999999999999987754
No 154
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.36 E-value=4.5e-12 Score=117.17 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=86.4
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEeeeecCCCCCCC
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIvviNKiDl~~~~ 89 (547)
...++..+.+++|||||+.+|...+...++.+|++++|+|+++..+.+....| ..+.. .++|+++++||+|+....
T Consensus 43 v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 43 VNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR 122 (163)
T ss_pred EEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence 34567788999999999999998888899999999999999876555444444 33333 357899999999986432
Q ss_pred --HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.......+....+ .+++++||++|.|+.+++++|++.+|
T Consensus 123 ~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 123 QVSTEEAQEYADENG---LLFFETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred cCCHHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 1222233333334 46899999999999999999998874
No 155
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=4.3e-12 Score=137.05 Aligned_cols=124 Identities=27% Similarity=0.353 Sum_probs=96.2
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchH-----------HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFS-----------YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF 70 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~-----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 70 (547)
++.||+|++. ...+..+++|||||+.+.. ....++++.||++++|+|++++.+.|+..++..+.
T Consensus 202 ~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~ 281 (435)
T PRK00093 202 SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLAL 281 (435)
T ss_pred cCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 5789999874 2345678999999974321 23346788999999999999999999999999999
Q ss_pred hcCCcEEeeeecCCCCCCC-HHHHHHHHHHhcC-CCCccceeccccccccccccHHHHHhhC
Q 008991 71 ESELTIIPVINKIDQPTAD-PDRVKAQLKSMFD-LDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~-~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+.+.|+++|+||+|+.+.+ .++..+++...+. ....+++++||++|.|++++++.+.+..
T Consensus 282 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 282 EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999996332 2344445554443 2346899999999999999999987643
No 156
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.36 E-value=3.6e-12 Score=120.37 Aligned_cols=115 Identities=20% Similarity=0.176 Sum_probs=85.8
Q ss_pred EEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHH-HHh--cCCcEEeeeecCCCCCC
Q 008991 13 SEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYL-AFE--SELTIIPVINKIDQPTA 88 (547)
Q Consensus 13 T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~--~~lpiIvviNKiDl~~~ 88 (547)
+...++..+.++||||||+.+|...+..+++.+|++|+|+|.++..+.+... .|.. ... .++|+++|+||+|+.+.
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 41 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 120 (174)
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC
Confidence 3455677789999999999999988888999999999999999877777653 3432 222 36899999999999643
Q ss_pred CH--------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 89 DP--------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 89 ~~--------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.. ....+++.+.++ ..+++++||++|.|++++|+.+++.
T Consensus 121 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 121 KDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEecccccCCHHHHHHHHHHh
Confidence 21 011122233232 2478999999999999999998764
No 157
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.35 E-value=3.3e-12 Score=119.35 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=86.6
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-----hcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.+++|||||+.+|...+...+..+|++++|+|.++..+.+....|.... ..++|+++++||+|+...+
T Consensus 43 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 43 EIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred EECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 34666788999999999999999999999999999999999876666554443321 2479999999999986533
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. ......+.+.++ ..+++++||++|.|++++|++++..+
T Consensus 123 ~~~~~~~~~~~~~~~--~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 123 QVSREDGVSLSQQWG--NVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred ccCHHHHHHHHHHcC--CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2 111223333333 24789999999999999999998755
No 158
>PRK04213 GTP-binding protein; Provisional
Probab=99.35 E-value=5.1e-12 Score=121.70 Aligned_cols=125 Identities=26% Similarity=0.294 Sum_probs=87.5
Q ss_pred CCCCCeEEEeCCCc-eEEEEEeCCCc-----------cchHHHHHHH----HhhcCEEEEEEECCCCC-----------c
Q 008991 7 LNGPGTSEAHNPSS-FLLNLIDTPGH-----------VDFSYEVSRS----LAACQGALLVVDAAQGV-----------Q 59 (547)
Q Consensus 7 s~~pG~T~~~~~~~-~~l~liDTPGh-----------~df~~~~~~~----l~~aD~ailVvDa~~g~-----------~ 59 (547)
+..||+|+....-. ..+++|||||+ ..|...+..+ +..+|++++|+|++... .
T Consensus 37 ~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~ 116 (201)
T PRK04213 37 GKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEI 116 (201)
T ss_pred CCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCc
Confidence 45789888643211 15889999995 3344443333 34578999999986532 1
Q ss_pred hhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCC------ccceeccccccccccccHHHHHhhCCCC
Q 008991 60 AQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDP------SEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 60 ~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.++.+.+..+...++|+++|+||+|+.+.+ .+..+++.+.++... .+++++||++| |+++++++|.+.++.-
T Consensus 117 ~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 117 PIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 234555666667799999999999997654 344566666676521 25899999999 9999999999987653
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=3.6e-12 Score=138.95 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=94.9
Q ss_pred CCCCCCeEEEeC-----CCceEEEEEeCCCcc---------c-hHHH-HHHHHhhcCEEEEEEECCCCCchhhHHHHHHH
Q 008991 6 ELNGPGTSEAHN-----PSSFLLNLIDTPGHV---------D-FSYE-VSRSLAACQGALLVVDAAQGVQAQTVANFYLA 69 (547)
Q Consensus 6 ~s~~pG~T~~~~-----~~~~~l~liDTPGh~---------d-f~~~-~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~ 69 (547)
.|++||+|++.. ..+..+.||||||.. + |... ...++..||++++|+|++++.+.+....+..+
T Consensus 239 ~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~ 318 (472)
T PRK03003 239 VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMV 318 (472)
T ss_pred ccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 367899998642 234567899999962 2 2222 23467899999999999999999998888888
Q ss_pred HhcCCcEEeeeecCCCCCCCH-HHHHHHHHHhcC-CCCccceeccccccccccccHHHHHhhCC
Q 008991 70 FESELTIIPVINKIDQPTADP-DRVKAQLKSMFD-LDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~~-~~~~~~i~~~l~-~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
...++|+|+|+||+|+.+.+. ....+++.+.+. ....+++++||++|.|++++++.+.+.++
T Consensus 319 ~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 319 IEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred HHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 888999999999999975332 223344544443 23458899999999999999999987653
No 160
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.34 E-value=3.6e-12 Score=117.62 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=84.1
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH--Hhc--CCcEEeeeecCCCCCCC--H
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA--FES--ELTIIPVINKIDQPTAD--P 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~--~~~--~lpiIvviNKiDl~~~~--~ 90 (547)
++..+.+++|||||+..|...+...+..+|++++|+|+++..+.+....|... ... +.|+++++||+|+.... .
T Consensus 45 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~ 124 (161)
T cd01861 45 EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS 124 (161)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccC
Confidence 45567899999999999999999999999999999999987776665555432 223 48999999999995322 1
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+....+.+..+ .+++++||++|.|+++++++|.+.
T Consensus 125 ~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 125 TEEGEKKAKELN---AMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHHHHhC---CEEEEEeCCCCCCHHHHHHHHHHh
Confidence 222233333333 478999999999999999999875
No 161
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.34 E-value=4.4e-12 Score=116.87 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=81.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHHH----hcCCcEEeeeecCCCCCCC-HHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLAF----ESELTIIPVINKIDQPTAD-PDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~----~~~lpiIvviNKiDl~~~~-~~~ 92 (547)
..+.+++|||||+..|...+...+..+|++++|+|++++..... ..++.... ..+.|+++|+||+|+...+ .++
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~ 120 (158)
T cd00878 41 KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSE 120 (158)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHH
Confidence 46789999999999999999999999999999999998643333 23333222 3478999999999997644 333
Q ss_pred HHHHHHHh-cCCCCccceeccccccccccccHHHHHh
Q 008991 93 VKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 93 ~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
+.+.+... ......+++++||++|.|+++++++|..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 121 LIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 33333222 1222457999999999999999999865
No 162
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.34 E-value=6.7e-12 Score=116.12 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=85.4
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh--------cCCcEEeeeecCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE--------SELTIIPVINKIDQ 85 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~--------~~lpiIvviNKiDl 85 (547)
..++..+.+++|||||+.+|...+...+..+|++|+|+|+++..+.+....|... .. .+.|+++|+||+|+
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 43 SVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred EECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 3467789999999999999998888899999999999999987666665555322 11 35889999999999
Q ss_pred CCCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 86 PTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 86 ~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.... .......+....+ .+++++||++|.|+++++++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 123 TKHRAVSEDEGRLWAESKG---FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ccccccCHHHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6321 1222223333333 3689999999999999999998764
No 163
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.34 E-value=6.7e-12 Score=118.28 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=83.6
Q ss_pred CCCCeEE-EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHH-Hh---cCCcEEeeee
Q 008991 8 NGPGTSE-AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLA-FE---SELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~-~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~-~~---~~lpiIvviN 81 (547)
++.|.+. ....++..+.+|||||+..|...+..++..||++++|+|+++....+.. ..+... .. .++|+++++|
T Consensus 45 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 45 PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred CccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 3445433 2234568899999999999999999999999999999999886544332 222222 22 3689999999
Q ss_pred cCCCCCC-CHHHHHHHHHHhcCC-----CCccceeccccccccccccHHHHHh
Q 008991 82 KIDQPTA-DPDRVKAQLKSMFDL-----DPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 82 KiDl~~~-~~~~~~~~i~~~l~~-----~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
|+|+.+. +.++ +.+.++. ...+++++||++|.|+++++++|.+
T Consensus 125 K~Dl~~~~~~~~----i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 125 KQDLKGAMTPAE----ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCCCCCCHHH----HHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 9999764 3333 3233332 1236899999999999999999864
No 164
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.34 E-value=5.5e-12 Score=116.47 Aligned_cols=114 Identities=24% Similarity=0.240 Sum_probs=88.4
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh---cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE---SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~lpiIvviNKiDl~~~~- 89 (547)
+.++..+.+++|||||+..|.......++.||++++|+|+++..+.+....|... .. .++|+++|+||+|+...+
T Consensus 43 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~ 122 (164)
T smart00175 43 EVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ 122 (164)
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC
Confidence 3456668899999999999999999999999999999999987777766555332 22 468999999999986522
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+..+++.+.++. +++++||++|.|++++++.|.+.++
T Consensus 123 ~~~~~~~~~~~~~~~---~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 123 VSREEAEAFAEEHGL---PFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 12223344444443 6899999999999999999988763
No 165
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.34 E-value=5.8e-12 Score=117.28 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=86.3
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH----HhcCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA----FESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~----~~~~lpiIvviNKiDl~~~~~ 90 (547)
.+++..+.+++|||||+.+|...+..++..+|++++|+|++++.+.+....|... ...++|+++|+||+|+...+.
T Consensus 50 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 50 EIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 3466678899999999999999999999999999999999987666555555322 224789999999999864321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
....+++.+... .+++++||++|.|+++++++|.+.+
T Consensus 130 i~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 130 VSQQRAEEFSDAQD---MYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred cCHHHHHHHHHHcC---CeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 222334443332 4789999999999999999998753
No 166
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=7.9e-12 Score=134.99 Aligned_cols=121 Identities=24% Similarity=0.328 Sum_probs=92.6
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccc--------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVD--------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~d--------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++.. ..++.+++|||||+.+ +...+..++..+|++++|+|+.++.+......+..+...+
T Consensus 30 ~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~ 109 (435)
T PRK00093 30 ADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSN 109 (435)
T ss_pred CCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 56899988653 2347899999999988 3334566788999999999999998887777777777889
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.|+++|+||+|+.+. +....++. .+++ .+++++||++|.|+.++++.+....+.
T Consensus 110 ~piilv~NK~D~~~~--~~~~~~~~-~lg~--~~~~~iSa~~g~gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 110 KPVILVVNKVDGPDE--EADAYEFY-SLGL--GEPYPISAEHGRGIGDLLDAILEELPE 163 (435)
T ss_pred CcEEEEEECccCccc--hhhHHHHH-hcCC--CCCEEEEeeCCCCHHHHHHHHHhhCCc
Confidence 999999999997542 12222222 2333 357999999999999999999885544
No 167
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.34 E-value=7.7e-12 Score=115.40 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=79.1
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHH----hcCCcEEeeeecCCCCCCC-HH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAF----ESELTIIPVINKIDQPTAD-PD 91 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~----~~~lpiIvviNKiDl~~~~-~~ 91 (547)
+..+.+++|||||+..|...+...+..+|++++|+|+++..+..... .+.... ..+.|+++|+||+|++... .+
T Consensus 41 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 120 (160)
T cd04156 41 EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120 (160)
T ss_pred CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHH
Confidence 34688999999999999999999999999999999998865333322 222221 2579999999999996542 33
Q ss_pred HHHHHHH-HhcC-CCCccceeccccccccccccHHHHHh
Q 008991 92 RVKAQLK-SMFD-LDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 92 ~~~~~i~-~~l~-~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
++...+. ..+. ....+++++||++|.|+++++++|.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 3222221 0111 11236889999999999999999864
No 168
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.34 E-value=5.4e-12 Score=126.02 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=88.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh------------cCCcEEeeee
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE------------SELTIIPVIN 81 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~------------~~lpiIvviN 81 (547)
..+++.+.++||||+|+.+|......++..+|++|+|+|.++..+.+....| ....+ .++|+|+|+|
T Consensus 42 ~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 42 SIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred EECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 4467779999999999999988888888999999999999987666655443 22211 3689999999
Q ss_pred cCCCCCCCHHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhCCCCC
Q 008991 82 KIDQPTADPDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
|+|+...+. ...+++.+.++. ...+++++||++|.|++++|++|.+..-.|.
T Consensus 122 K~Dl~~~~~-v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 122 KADRDFPRE-VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred Cccchhccc-cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 999964221 112334444332 2347899999999999999999998775554
No 169
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.34 E-value=6.6e-12 Score=116.97 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=82.9
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh------cCCcEEeeeecCCCCCCC
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE------SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~------~~lpiIvviNKiDl~~~~ 89 (547)
+++.+.+++|||||+.+|......++..+|++++|+|.++..+.+....| ..... .++|+++|+||+|+...+
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (165)
T cd04140 45 SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKR 124 (165)
T ss_pred CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccC
Confidence 55678899999999999998888899999999999999987776654443 33332 468999999999996532
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
. ......+...++ .+++++||++|.|+++++++|++.
T Consensus 125 ~v~~~~~~~~~~~~~---~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 125 EVSSNEGAACATEWN---CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecHHHHHHHHHHhC---CcEEEeecCCCCCHHHHHHHHHhc
Confidence 1 111122222232 368999999999999999999754
No 170
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.34 E-value=5.6e-12 Score=132.10 Aligned_cols=124 Identities=27% Similarity=0.334 Sum_probs=101.2
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc----------hH-HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD----------FS-YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF 70 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d----------f~-~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 70 (547)
|+.|||||+- ..++..+.++||+|... |+ .....++..||.++||+||++|+..|......++.
T Consensus 207 ~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~ 286 (444)
T COG1160 207 SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIE 286 (444)
T ss_pred cCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHH
Confidence 6899999974 33456778999999743 32 24567788899999999999999999999999999
Q ss_pred hcCCcEEeeeecCCCCCC---CHHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhC
Q 008991 71 ESELTIIPVINKIDQPTA---DPDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~~---~~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+.+.++++|+||+|+... ..+...+++...+.+ ...+++++||++|.|+.++++++....
T Consensus 287 ~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 287 EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 999999999999998653 345556666666643 456899999999999999999987644
No 171
>PRK00089 era GTPase Era; Reviewed
Probab=99.34 E-value=7.6e-12 Score=127.97 Aligned_cols=124 Identities=22% Similarity=0.250 Sum_probs=94.6
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccch--------HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDF--------SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df--------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
|+.|+||+.. ...+.++.|+||||+.+. ...+..++..+|++++|+|++++.+......+..+...+
T Consensus 34 s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~ 113 (292)
T PRK00089 34 SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVK 113 (292)
T ss_pred CCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcC
Confidence 6788888854 234578999999998553 344556788999999999999876666666666666678
Q ss_pred CcEEeeeecCCCCCC--CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTA--DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~--~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.|+++|+||+|+... ......+++.+.++ ..+++++||++|.|++++++.|.+.+|+
T Consensus 114 ~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~--~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 114 TPVILVLNKIDLVKDKEELLPLLEELSELMD--FAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCEEEEEECCcCCCCHHHHHHHHHHHHhhCC--CCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999632 22334444444333 3578999999999999999999999875
No 172
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.33 E-value=6.4e-12 Score=118.65 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=82.3
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHHHh----cCCcEEeeeecCCCCCCCHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLAFE----SELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~----~~lpiIvviNKiDl~~~~~~~ 92 (547)
.+.+.+++|||||+..|...+..+++.||++|+|+|+++..+... .++|..... .+.|+++|+||+|+.++..
T Consensus 54 ~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-- 131 (175)
T smart00177 54 YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-- 131 (175)
T ss_pred ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC--
Confidence 456889999999999999999999999999999999987543333 334433322 3689999999999976532
Q ss_pred HHHHHHHhcCCC-----CccceeccccccccccccHHHHHhhC
Q 008991 93 VKAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 93 ~~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+++.+.++.. ...++++||++|.|+++++++|.+.+
T Consensus 132 -~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 -AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred -HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 13344444432 22466899999999999999998764
No 173
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.33 E-value=3.5e-12 Score=121.47 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=84.9
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCC-
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTA- 88 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~- 88 (547)
...++..+.+++|||+|+..|...+..+++.||++++|+|+++..+.+....|.. +.. .+.| |+|+||+|+...
T Consensus 42 i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 42 ISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred EEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 3446777899999999999999988899999999999999998777666555533 322 2456 688999999531
Q ss_pred ---CHHHH---HHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 89 ---DPDRV---KAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 89 ---~~~~~---~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+.. .+++.+.++ .+++++||++|.|++++|+++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~---~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMK---APLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred cchhhhhhHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111 223333343 47899999999999999999987664
No 174
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.33 E-value=7.4e-12 Score=116.47 Aligned_cols=120 Identities=23% Similarity=0.223 Sum_probs=78.5
Q ss_pred CCCCeEEEeC-----CCceEEEEEeCCCccchH--------HHHHHHH-hhcCEEEEEEECCCCCch--h-hHHHHHHHH
Q 008991 8 NGPGTSEAHN-----PSSFLLNLIDTPGHVDFS--------YEVSRSL-AACQGALLVVDAAQGVQA--Q-TVANFYLAF 70 (547)
Q Consensus 8 ~~pG~T~~~~-----~~~~~l~liDTPGh~df~--------~~~~~~l-~~aD~ailVvDa~~g~~~--q-t~~~~~~~~ 70 (547)
++|++|.+.. .+++.++||||||+.+.. .....++ ..+|++++|+|+++.... . ...++..+.
T Consensus 29 ~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~ 108 (168)
T cd01897 29 PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIK 108 (168)
T ss_pred CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHH
Confidence 4566665442 345789999999985321 1111122 236899999999875431 1 223444444
Q ss_pred hc--CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 71 ES--ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 71 ~~--~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.. +.|+++|+||+|+.+.+.... ..+.......+++++||++|.|++++++++.+.+
T Consensus 109 ~~~~~~pvilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 109 PLFKNKPVIVVLNKIDLLTFEDLSE---IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hhcCcCCeEEEEEccccCchhhHHH---HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 44 799999999999965432111 2233333445789999999999999999998764
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.33 E-value=1.1e-11 Score=114.82 Aligned_cols=122 Identities=25% Similarity=0.336 Sum_probs=90.3
Q ss_pred CCCCeEEEe-----CCCceEEEEEeCCCccchH-----------HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 8 NGPGTSEAH-----NPSSFLLNLIDTPGHVDFS-----------YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 8 ~~pG~T~~~-----~~~~~~l~liDTPGh~df~-----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
+.|++|++. ...+..+++|||||+.+.. ......+..+|++++|+|+.++.+.+....+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~ 111 (174)
T cd01895 32 DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILE 111 (174)
T ss_pred CCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh
Confidence 456665433 2234568899999985441 123446678999999999999988888777888777
Q ss_pred cCCcEEeeeecCCCCCCC---HHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhh
Q 008991 72 SELTIIPVINKIDQPTAD---PDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~---~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+.|+++++||+|+...+ .+...+.+.+.++. ...+++++||++|.|++++++++.+.
T Consensus 112 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 112 EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 899999999999997652 23445556555542 23579999999999999999998653
No 176
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=4.7e-12 Score=124.24 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=90.7
Q ss_pred CCCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH---hcCCcEEee
Q 008991 8 NGPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF---ESELTIIPV 79 (547)
Q Consensus 8 ~~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~---~~~lpiIvv 79 (547)
++.|+++. .++..+.+++|||||+.+|...+..+++.+|++|+|+|.++..+.+....|.... ..++|+++|
T Consensus 44 ~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilv 123 (219)
T PLN03071 44 PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC 123 (219)
T ss_pred CccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45565432 2456789999999999999988888899999999999999988777766663322 247899999
Q ss_pred eecCCCCCCCH-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 80 INKIDQPTADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 80 iNKiDl~~~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+||+|+..... .+.. ++....+ .+++++||++|.|++++|++|++.+.
T Consensus 124 gNK~Dl~~~~v~~~~~-~~~~~~~---~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 124 GNKVDVKNRQVKAKQV-TFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred EEchhhhhccCCHHHH-HHHHhcC---CEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 99999964322 1111 3333222 46899999999999999999998764
No 177
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.33 E-value=9.5e-12 Score=116.17 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=86.1
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-H-------hcCCcEEeeeecCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-F-------ESELTIIPVINKIDQPT 87 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~-------~~~lpiIvviNKiDl~~ 87 (547)
.++..+.++||||||+.+|...+...++.+|++++|+|.++..+.+....|... . ..++|+++|+||+|+..
T Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 49 VDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred ECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 467788999999999999999999999999999999999988777666555322 1 13589999999999864
Q ss_pred CC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 88 AD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 88 ~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.. .....+++.+.++ ..+++++||++|.|+.++|+.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 129 RQVSTEEAQAWCRENG--DYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred cccCHHHHHHHHHHCC--CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 22 1222334433343 2478999999999999999999865
No 178
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.33 E-value=6.2e-12 Score=116.97 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=84.8
Q ss_pred EeCCCceEEEEEeCCCccc-hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-H-----hcCCcEEeeeecCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVD-FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-F-----ESELTIIPVINKIDQPT 87 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~d-f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~-----~~~lpiIvviNKiDl~~ 87 (547)
..+++.+.+++|||||+.. +.......++.+|++++|+|+++..+.+....|... . ..++|+++|+||+|+..
T Consensus 41 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 41 TIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred EECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 3466778899999999985 456778889999999999999998777765555322 2 23799999999999854
Q ss_pred CCH--HHHHHHHHHhcCCCCccceeccccccc-cccccHHHHHhhC
Q 008991 88 ADP--DRVKAQLKSMFDLDPSEALLTSAKTGQ-GLEHVLPAVIERI 130 (547)
Q Consensus 88 ~~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~-Gv~~Ll~~l~~~i 130 (547)
.+. .+..+.+.+.++ .+++++||++|. ||+++|+.+++.+
T Consensus 121 ~~~v~~~~~~~~~~~~~---~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 121 YRQVSTEEGEKLASELG---CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred hCccCHHHHHHHHHHcC---CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 321 122334444444 378999999994 9999999998754
No 179
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.33 E-value=9e-12 Score=116.25 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=86.1
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHh--cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFE--SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++|||||+.++...+...+..+|++++|+|++++.+.+... .| ..... .++|+++|+||+|+.+...
T Consensus 41 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 41 DVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred eecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 34567889999999999998888888899999999999999887777643 34 33332 3789999999999976443
Q ss_pred H----HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 D----RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~----~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. .....+.+.+.. ..+++++||++|.|++++++.+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 121 QAGLEEEMLPIMNEFRE-IETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hhHHHHHHHHHHHHHhc-ccEEEEeccccccCHHHHHHHHHHHh
Confidence 1 212222222321 13689999999999999999998765
No 180
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.32 E-value=4.1e-12 Score=144.98 Aligned_cols=147 Identities=22% Similarity=0.231 Sum_probs=105.0
Q ss_pred CCCCCCeEEEeC-----CCceEEEEEeCCCcc---------chHHH--HHHHHhhcCEEEEEEECCCCCchhhHHHHHHH
Q 008991 6 ELNGPGTSEAHN-----PSSFLLNLIDTPGHV---------DFSYE--VSRSLAACQGALLVVDAAQGVQAQTVANFYLA 69 (547)
Q Consensus 6 ~s~~pG~T~~~~-----~~~~~l~liDTPGh~---------df~~~--~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~ 69 (547)
.+++||||++.. ..+..+.||||||+. +|... ...++..||++++|+|++++.+.++..++..+
T Consensus 478 v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~ 557 (712)
T PRK09518 478 VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMA 557 (712)
T ss_pred cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 367899998752 234567899999964 22221 23557889999999999999999999999888
Q ss_pred HhcCCcEEeeeecCCCCCCCH-HHHHHHHHHhc-CCCCccceeccccccccccccHHHHHhhCCC-----CCccccCcee
Q 008991 70 FESELTIIPVINKIDQPTADP-DRVKAQLKSMF-DLDPSEALLTSAKTGQGLEHVLPAVIERIPP-----PRGIINSSLR 142 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~~-~~~~~~i~~~l-~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~-----p~~~~~~p~~ 142 (547)
...++|+++|+||+|+.+... +...+++...+ .....+++++||++|.|++++++.+.+..+. |+...+..++
T Consensus 558 ~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~ 637 (712)
T PRK09518 558 VDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLG 637 (712)
T ss_pred HHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHH
Confidence 888999999999999965432 23333444433 3345678999999999999999999987764 3333444444
Q ss_pred EEEEeeecccc
Q 008991 143 MLLLDSYYDEY 153 (547)
Q Consensus 143 ~~v~~~~~d~~ 153 (547)
..+ +.+..|.
T Consensus 638 ~~~-~~~~~p~ 647 (712)
T PRK09518 638 KIQ-AEHPHPL 647 (712)
T ss_pred HHH-hhCCCCc
Confidence 433 4444543
No 181
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.32 E-value=4.5e-12 Score=119.84 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=84.2
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHH-HHh--cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYL-AFE--SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~-~~~--~~lpiIvviNKiDl~~~~~ 90 (547)
..+++.+.++||||||+.+|...+..+++.+|++|+|+|.++..+.+... .|.. ... .++|+|+|+||+|+.+...
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (175)
T cd01874 43 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 122 (175)
T ss_pred EECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh
Confidence 34566789999999999999888888999999999999999887777654 3532 222 3689999999999865311
Q ss_pred --------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 91 --------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 91 --------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+..+++.+.+ ....++++||++|.|++++|+.++..
T Consensus 123 ~~~~l~~~~~~~v~~~~~~~~a~~~--~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 123 TIEKLAKNKQKPITPETGEKLARDL--KAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hHHHhhhccCCCcCHHHHHHHHHHh--CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 00111222222 23478999999999999999998764
No 182
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.32 E-value=8.9e-12 Score=118.59 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=81.5
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHH-h---cCCcEEeeeecCCCCCCCHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAF-E---SELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~---~~lpiIvviNKiDl~~~~~~ 91 (547)
+..++.+++|||||+..|...+..+++.+|++|+|+|+++..+.... ..+.... . .+.|+++|+||.|+++....
T Consensus 57 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 136 (182)
T PTZ00133 57 EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST 136 (182)
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH
Confidence 44678999999999999999999999999999999999875433332 2222221 1 36899999999999764321
Q ss_pred HHHHHHHHhcCCCC-----ccceeccccccccccccHHHHHhhC
Q 008991 92 RVKAQLKSMFDLDP-----SEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 92 ~~~~~i~~~l~~~~-----~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+++...++... ..++++||++|.|+++++++|.+.+
T Consensus 137 ---~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 137 ---TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred ---HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 23344444421 2456899999999999999998754
No 183
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.32 E-value=6.8e-12 Score=117.98 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=84.9
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHhc----CCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFES----ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~----~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.++||||||+.+|...+...++.+|++++|+|+++..+.+....|.. ..+. ..|+++|+||+|+...+.
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (170)
T cd04108 44 ILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ 123 (170)
T ss_pred ECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence 35667899999999999999999999999999999999988666665555543 2232 256899999999854422
Q ss_pred ----HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 ----DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ----~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+....++.+.++ .+++++||++|.|++++++.|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~---~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 124 YALMEQDAIKLAAEMQ---AEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred ccccHHHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 112223333333 36899999999999999999987653
No 184
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.32 E-value=6.7e-13 Score=122.63 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=81.5
Q ss_pred CCCCCeEEEeCC-----CceEEEEEeCCCccchH------HHHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHNP-----SSFLLNLIDTPGHVDFS------YEVSRSL--AACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~~-----~~~~l~liDTPGh~df~------~~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+|+||+|++... .+..+.|+||||.-++. .....++ ...|++++|+||++ -.++.....++.+.+
T Consensus 28 ~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g 105 (156)
T PF02421_consen 28 GNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELG 105 (156)
T ss_dssp EESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTT
T ss_pred cCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcC
Confidence 689999998632 45789999999964422 1223333 47999999999987 345566667778899
Q ss_pred CcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHH
Q 008991 74 LTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAV 126 (547)
Q Consensus 74 lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l 126 (547)
+|+++++||+|+.... ..--.+.+.+.++. |++++||++|.|+++|+++|
T Consensus 106 ~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~---pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 106 IPVVVVLNKMDEAERKGIEIDAEKLSERLGV---PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SSEEEEEETHHHHHHTTEEE-HHHHHHHHTS----EEEEBTTTTBTHHHHHHHH
T ss_pred CCEEEEEeCHHHHHHcCCEECHHHHHHHhCC---CEEEEEeCCCcCHHHHHhhC
Confidence 9999999999974321 11124677777875 79999999999999999875
No 185
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.32 E-value=5e-12 Score=117.39 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=84.3
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~~-- 90 (547)
++..+.+++|||||+..|...+...+..|+++++|+|+++..+.+....|.. ..+ .++|+++|+||+|+...+.
T Consensus 48 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~ 127 (165)
T cd01868 48 DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 127 (165)
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC
Confidence 5556789999999999999999999999999999999997666666554533 222 2689999999999865321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+....+.... ..+++++||++|.|++++++.+.+.+
T Consensus 128 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 128 TEEAKAFAEKN---GLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHc---CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 22223333322 34789999999999999999998764
No 186
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.32 E-value=6e-12 Score=120.34 Aligned_cols=117 Identities=20% Similarity=0.153 Sum_probs=87.6
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHh--cCCcEEeeeecCCCCCCCHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFE--SELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~lpiIvviNKiDl~~~~~~ 91 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|.++..+.+... .| ..... .+.|+++|+||+|+......
T Consensus 43 ~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~ 122 (189)
T cd04134 43 VDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNE 122 (189)
T ss_pred ECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhh
Confidence 3566789999999999999888888889999999999999987777654 23 33332 37899999999999764321
Q ss_pred H-H-------------HHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 92 R-V-------------KAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 92 ~-~-------------~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
. . ..++.... ...+++++||++|.|++++|++|++.+..|.
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRI--NALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHc--CCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 1 0 11122222 2246899999999999999999998876554
No 187
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.32 E-value=5.3e-12 Score=118.04 Aligned_cols=111 Identities=22% Similarity=0.231 Sum_probs=86.1
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-h---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-E---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~lpiIvviNKiDl~~~~-- 89 (547)
.++....+++|||||+.+|.......++.+|++++|+|+++..+.+....|.... . .+.|+++|+||+|+....
T Consensus 48 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 127 (168)
T cd01866 48 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV 127 (168)
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC
Confidence 4666788999999999999999999999999999999999877777766664332 2 378999999999996322
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+. ...+....+ .+++++||++|.|++++|+.+.+.+
T Consensus 128 ~~~~-~~~~~~~~~---~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 128 SYEE-GEAFAKEHG---LIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred CHHH-HHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222 222333233 4689999999999999999998764
No 188
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.31 E-value=4.6e-12 Score=117.03 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HH----hcCCcEE
Q 008991 8 NGPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AF----ESELTII 77 (547)
Q Consensus 8 ~~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~----~~~lpiI 77 (547)
+++|.++. .++..+.+++|||||+..|.......++.+|++++|+|+++..+.+....|.. .. ..+.|++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~ 110 (161)
T cd01863 31 ATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM 110 (161)
T ss_pred CcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE
Confidence 45565432 35567889999999999999888889999999999999988776666554532 22 3478899
Q ss_pred eeeecCCCCCCCH-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 78 PVINKIDQPTADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 78 vviNKiDl~~~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
+|+||+|+..... .+...++....+ .+++++||++|.|++++++.+.+.
T Consensus 111 iv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 111 LVGNKIDKENREVTREEGLKFARKHN---MLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEECCcccccccCHHHHHHHHHHcC---CEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999974321 122233333333 478999999999999999998765
No 189
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.31 E-value=9.2e-12 Score=118.66 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=86.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHH-HHHh--cCCcEEeeeecCCCCCC--
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFY-LAFE--SELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~-~~~~--~~lpiIvviNKiDl~~~-- 88 (547)
..+++.+.++||||+|...|......+++.+|++++|+|.++..+.+.. ..|. .... .+.|+++|+||+|+...
T Consensus 47 ~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 126 (182)
T cd04172 47 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLT 126 (182)
T ss_pred EECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChh
Confidence 4567789999999999999999888899999999999999998887775 4553 3322 36889999999998541
Q ss_pred ------------CHHHHHHHHHHhcCCCCccceecccccccc-ccccHHHHHhh
Q 008991 89 ------------DPDRVKAQLKSMFDLDPSEALLTSAKTGQG-LEHVLPAVIER 129 (547)
Q Consensus 89 ------------~~~~~~~~i~~~l~~~~~~vi~~SAk~g~G-v~~Ll~~l~~~ 129 (547)
-..+..+++.+.++. .+++++||++|.| |+++|+.++..
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCC--CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 011223444444442 3689999999998 99999988763
No 190
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.31 E-value=9.8e-12 Score=119.93 Aligned_cols=113 Identities=21% Similarity=0.257 Sum_probs=87.2
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh---cCCcEEeeeecCCCCCCCH--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE---SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~lpiIvviNKiDl~~~~~-- 90 (547)
.++..+.++||||||+..|...+..+++.+|++++|+|+++..+.+....|..... ...|+++|+||+|+.....
T Consensus 50 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~ 129 (199)
T cd04110 50 INGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE 129 (199)
T ss_pred ECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC
Confidence 35667889999999999999999999999999999999998777666555543322 3588999999999965321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.....++...++ .+++++||++|.||+++|++|...+.
T Consensus 130 ~~~~~~~~~~~~---~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 130 TEDAYKFAGQMG---ISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHHHHHHHHcC---CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 122233333333 47899999999999999999988764
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=1.1e-11 Score=141.49 Aligned_cols=121 Identities=18% Similarity=0.292 Sum_probs=95.2
Q ss_pred CCCCCeEEEeCC-----CceEEEEEeCCCccc--------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHNP-----SSFLLNLIDTPGHVD--------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~~-----~~~~l~liDTPGh~d--------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++... .+..+++|||||+.. |...+..++..||++++|+|++++.......++..+...+
T Consensus 304 ~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~ 383 (712)
T PRK09518 304 EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAG 383 (712)
T ss_pred cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578999997532 356799999999763 5566777889999999999999998888877888888899
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.|+|+|+||+|+..... ...+.. .+++. ..+++||++|.||.+|+++|++.++.
T Consensus 384 ~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~--~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 384 KPVVLAVNKIDDQASEY--DAAEFW-KLGLG--EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCEEEEEECcccccchh--hHHHHH-HcCCC--CeEEEECCCCCCchHHHHHHHHhccc
Confidence 99999999999865321 112221 23432 45799999999999999999998865
No 192
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.2e-11 Score=115.25 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=93.4
Q ss_pred eEEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh-cC---CcEEeeeecCCCC
Q 008991 12 TSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE-SE---LTIIPVINKIDQP 86 (547)
Q Consensus 12 ~T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~-~~---lpiIvviNKiDl~ 86 (547)
.|....+..+.++||||+|++.|...+..+++.+..||+|+|.++.-+.+....| .-+.. ++ +-+++|.||.||.
T Consensus 62 kt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 62 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred EEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 3556678899999999999999999999999999999999999998777765555 44433 32 4478999999997
Q ss_pred CCCHHHHHH--HHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCc
Q 008991 87 TADPDRVKA--QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRG 135 (547)
Q Consensus 87 ~~~~~~~~~--~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~ 135 (547)
+.+.-...+ .....++ ..++.+||+.|.||.++|..|...+|.+..
T Consensus 142 dkrqvs~eEg~~kAkel~---a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 142 DKRQVSIEEGERKAKELN---AEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred chhhhhHHHHHHHHHHhC---cEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 653211111 2222233 378999999999999999999999988754
No 193
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.30 E-value=1.5e-11 Score=113.39 Aligned_cols=112 Identities=23% Similarity=0.268 Sum_probs=84.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeeecCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviNKiDl~~~-- 88 (547)
.++..+.+.+|||||+.+|...+...++.+|++++|+|.++..+......| .... ..++|+++|+||+|+...
T Consensus 43 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 122 (164)
T cd04139 43 LDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ 122 (164)
T ss_pred ECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccc
Confidence 456778999999999999999999999999999999999875443332222 2222 257999999999999652
Q ss_pred CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 89 DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.......++.+.++ .+++++||++|.|++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 123 VSSEEAANLARQWG---VPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred cCHHHHHHHHHHhC---CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 12222333444444 3789999999999999999998764
No 194
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.30 E-value=1.1e-11 Score=115.77 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=80.2
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHH-HHHHH--hcCCcEEeeeecCCCCCCCH-H
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVAN-FYLAF--ESELTIIPVINKIDQPTADP-D 91 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~--~~~lpiIvviNKiDl~~~~~-~ 91 (547)
.+++++.+++|||||+.+|...+..+++.||++++|+|+++..+...... +.... ..++|+++|+||+|+..+.. .
T Consensus 39 i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~ 118 (164)
T cd04162 39 IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQ 118 (164)
T ss_pred EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH
Confidence 45677899999999999999999999999999999999988655444332 33332 25799999999999976542 2
Q ss_pred HHHHHH--HHhcCCCCccceeccccc------cccccccHHHHHh
Q 008991 92 RVKAQL--KSMFDLDPSEALLTSAKT------GQGLEHVLPAVIE 128 (547)
Q Consensus 92 ~~~~~i--~~~l~~~~~~vi~~SAk~------g~Gv~~Ll~~l~~ 128 (547)
++.+.+ ...-.-....++++||++ ++||.++|+.+++
T Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 211111 111111123566677766 9999999998865
No 195
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.30 E-value=1.4e-11 Score=114.91 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=85.1
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH--HHh------cCCcEEeeeecCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL--AFE------SELTIIPVINKIDQP 86 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~--~~~------~~lpiIvviNKiDl~ 86 (547)
...+..+.+++|||||+.+|...+...++.||++|+|+|++++.+.+....|.. ... .++|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 43 TVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 445667889999999999999999999999999999999988765554444422 111 278999999999997
Q ss_pred CCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 87 TAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 87 ~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+ ..+..+.+.+..+ ..+++++||++|.|++++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 123 EKRQVSTKKAQQWCQSNG--NIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred cccccCHHHHHHHHHHcC--CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 322 1222233333333 24789999999999999999998754
No 196
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.30 E-value=1.4e-11 Score=115.33 Aligned_cols=121 Identities=19% Similarity=0.173 Sum_probs=85.9
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHHh----cCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAFE----SELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~lpiIvviN 81 (547)
++.|+++. ...+++.+++|||||+..|...+..++..||++++|+|+++..+.+... .+..... .+.|+++|+|
T Consensus 29 ~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 29 PTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred CcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 45565432 3445789999999999999999999999999999999998865444433 3332222 4789999999
Q ss_pred cCCCCCCC-HHHHHHHH--HHhcC-C-CCccceecccccc------ccccccHHHHHh
Q 008991 82 KIDQPTAD-PDRVKAQL--KSMFD-L-DPSEALLTSAKTG------QGLEHVLPAVIE 128 (547)
Q Consensus 82 KiDl~~~~-~~~~~~~i--~~~l~-~-~~~~vi~~SAk~g------~Gv~~Ll~~l~~ 128 (547)
|+|++++. ..+..+.+ .+... . .+..++++||++| .|+.+.|++|.+
T Consensus 109 K~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 109 KQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 99998765 33333322 11110 0 1236788999998 899999999864
No 197
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.30 E-value=1.2e-11 Score=114.47 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=84.0
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh--cCCcEEeeeecCCCCCCCH--HH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE--SELTIIPVINKIDQPTADP--DR 92 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~--~~lpiIvviNKiDl~~~~~--~~ 92 (547)
+..+.+++|||||+..|...+...+..+|++++|+|.++..+......|... .. .+.|+++|+||+|+.+... ..
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 128 (164)
T cd04101 49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDA 128 (164)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHH
Confidence 5678999999999999999899999999999999999886655555555333 22 3689999999999964421 11
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+.+...++ .+++++||++|.|++++++.+.+.+
T Consensus 129 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 129 QAQAFAQANQ---LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHcC---CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 2233333333 3689999999999999999998754
No 198
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.30 E-value=1.1e-11 Score=117.39 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=84.6
Q ss_pred CCCCCeEEEeCCC--ceEEEEEeCCCcc----------chHHHHHHHHh---hcCEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 7 LNGPGTSEAHNPS--SFLLNLIDTPGHV----------DFSYEVSRSLA---ACQGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~~~~~--~~~l~liDTPGh~----------df~~~~~~~l~---~aD~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
|+++|+|++..-- +-.+.+|||||+. +|...+..+++ .+|++++|+|++++...++...+..+..
T Consensus 48 ~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~ 127 (179)
T TIGR03598 48 SKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE 127 (179)
T ss_pred cCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 5688888764310 1258999999963 35444555555 3689999999999999888888888888
Q ss_pred cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCC--Cccceecccccccccc
Q 008991 72 SELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLD--PSEALLTSAKTGQGLE 120 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~--~~~vi~~SAk~g~Gv~ 120 (547)
.++|+++++||+|+...+ .+...+++++.++.. ..+++++||++|+|++
T Consensus 128 ~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 128 RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 899999999999996432 344456666666532 2479999999999984
No 199
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.30 E-value=1.1e-11 Score=117.86 Aligned_cols=112 Identities=19% Similarity=0.130 Sum_probs=85.9
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHH---hcCCcEEeeeecCCCCCCC----
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAF---ESELTIIPVINKIDQPTAD---- 89 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~---~~~lpiIvviNKiDl~~~~---- 89 (547)
+..+.++||||||+.+|.......+..+|++++|+|+++..+.+... .|.... ..++|+++|+||+|+....
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 125 (187)
T cd04132 46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDR 125 (187)
T ss_pred CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccC
Confidence 56788999999999999988888899999999999999877776653 343222 2478999999999986532
Q ss_pred --HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.....+++...++. .+++++||++|.|++++|+.+++.+.
T Consensus 126 ~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 126 KVTPAQAESVAKKQGA--FAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred CcCHHHHHHHHHHcCC--cEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 12223344444443 36899999999999999999987664
No 200
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=1.9e-11 Score=120.79 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=86.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHH-HHHHh--cCCcEEeeeecCCCCCC--
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANF-YLAFE--SELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~-~~~~~--~~lpiIvviNKiDl~~~-- 88 (547)
..++..+.++||||+|+.+|......+++.||++++|+|.++..+.+. ...| ..... .+.|+|+|+||+|+...
T Consensus 55 ~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 134 (232)
T cd04174 55 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLS 134 (232)
T ss_pred EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccc
Confidence 446778999999999999999888889999999999999999887775 3444 33332 36889999999998531
Q ss_pred ----------C--HHHHHHHHHHhcCCCCccceeccccccc-cccccHHHHHhhC
Q 008991 89 ----------D--PDRVKAQLKSMFDLDPSEALLTSAKTGQ-GLEHVLPAVIERI 130 (547)
Q Consensus 89 ----------~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~-Gv~~Ll~~l~~~i 130 (547)
. ..+..+++.+.++. ..++++||++|. ||+++|+.++..+
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~--~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGA--EVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCC--CEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 0 11223445554443 257899999998 8999999987654
No 201
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.29 E-value=2.2e-11 Score=113.42 Aligned_cols=121 Identities=21% Similarity=0.189 Sum_probs=81.1
Q ss_pred CCCCCeEEEe-----CCCc-eEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCC-CchhhHHHHHH-HHh
Q 008991 7 LNGPGTSEAH-----NPSS-FLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQG-VQAQTVANFYL-AFE 71 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~-~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~~~-~~~ 71 (547)
+++|++|++. ...+ ..++||||||+.+ +...+.+.+..||++++|+|++++ ...+....|.. ...
T Consensus 28 ~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~ 107 (170)
T cd01898 28 ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELEL 107 (170)
T ss_pred cCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3567776532 1223 4899999999742 334455566779999999999987 44555444432 222
Q ss_pred -----cCCcEEeeeecCCCCCCCHHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhh
Q 008991 72 -----SELTIIPVINKIDQPTADPDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 72 -----~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+.|+++|+||+|+..... ..+.+...... ...+++++||++|.|+++++++|.+.
T Consensus 108 ~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 108 YNPELLEKPRIVVLNKIDLLDEEE--LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hCccccccccEEEEEchhcCCchh--hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 3689999999999865432 12222222222 23478999999999999999999765
No 202
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.29 E-value=1e-11 Score=119.92 Aligned_cols=114 Identities=20% Similarity=0.156 Sum_probs=81.5
Q ss_pred eCCCceEEEEEeCCCccchHH----H----HHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HH------hcCCcEEeee
Q 008991 16 HNPSSFLLNLIDTPGHVDFSY----E----VSRSLAACQGALLVVDAAQGVQAQTVANFYL-AF------ESELTIIPVI 80 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~----~----~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~------~~~lpiIvvi 80 (547)
+++..+.++||||||+.+|.. + ...++..||++++|+|++++.+.+....|.. .. ..++|+++|+
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 44 LSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred ECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 466678999999999876521 2 3456789999999999998777766555432 22 2468999999
Q ss_pred ecCCCCCCCH--HHHHHHHHH-hcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 81 NKIDQPTADP--DRVKAQLKS-MFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 81 NKiDl~~~~~--~~~~~~i~~-~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
||+|+...+. ....+++.. .. ..+++++||++|.|++++|+.++..+-.
T Consensus 124 NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 124 NKRDQQRHRFAPRHVLSVLVRKSW---KCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred ECccccccccccHHHHHHHHHHhc---CCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 9999965422 112222221 22 3478999999999999999999976543
No 203
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.28 E-value=1.5e-11 Score=115.22 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=84.6
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHH-HHHh--cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFY-LAFE--SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~-~~~~--~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+.+|||||+.+|.......+..+|++++|+|.++..+.+... .|. .... .++|+++|+||+|+.....
T Consensus 40 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 119 (174)
T smart00174 40 EVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKS 119 (174)
T ss_pred EECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChh
Confidence 34667788999999999999888888899999999999999876665542 233 3322 3799999999999864211
Q ss_pred --------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+..+++.+.++. .+++++||++|.|++++++.+++.+
T Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 120 TLRELSKQKQEPVTYEQGEALAKRIGA--VKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhhhhcccCCCccHHHHHHHHHHcCC--cEEEEecCCCCCCHHHHHHHHHHHh
Confidence 1112233333332 3689999999999999999998765
No 204
>PLN03118 Rab family protein; Provisional
Probab=99.28 E-value=1.3e-11 Score=120.14 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=86.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHH-----hcCCcEEeeeecCCCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAF-----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~-----~~~lpiIvviNKiDl~~~~ 89 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+... .|.... ..++|+++|+||+|+....
T Consensus 57 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~ 136 (211)
T PLN03118 57 VGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER 136 (211)
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC
Confidence 4566789999999999999999999999999999999999877666654 343222 2367899999999996532
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
. .+...++....+ .+++++||++|.|++++++.|...+..
T Consensus 137 ~i~~~~~~~~~~~~~---~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 137 DVSREEGMALAKEHG---CLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred ccCHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2 111222222233 368999999999999999999987643
No 205
>PLN03110 Rab GTPase; Provisional
Probab=99.28 E-value=1.8e-11 Score=119.84 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=89.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+..|...+...++.+|++++|+|.++..+.+....|. .+.. .++|+++|+||+|+...+
T Consensus 56 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 135 (216)
T PLN03110 56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSV 135 (216)
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCC
Confidence 4567789999999999999999999999999999999999877777765553 3332 379999999999985432
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
..+....+....+ .+++++||++|.|++++++.|++.+..
T Consensus 136 ~~~~~~~l~~~~~---~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 136 AEEDGQALAEKEG---LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1233344444443 478999999999999999999887644
No 206
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.28 E-value=1.6e-11 Score=116.46 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=85.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHH-HHh--cCCcEEeeeecCCCCCC--
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYL-AFE--SELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~-~~~--~~lpiIvviNKiDl~~~-- 88 (547)
..+++.+.+++|||||+..|......+++.||++|+|+|.++..+.+.. ..|.. ..+ .+.|+++|+||+|+.+.
T Consensus 43 ~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~ 122 (178)
T cd04131 43 EIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLS 122 (178)
T ss_pred EECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChh
Confidence 3467789999999999999988888889999999999999998887773 45533 332 36889999999998541
Q ss_pred ------------CHHHHHHHHHHhcCCCCccceecccccccc-ccccHHHHHhh
Q 008991 89 ------------DPDRVKAQLKSMFDLDPSEALLTSAKTGQG-LEHVLPAVIER 129 (547)
Q Consensus 89 ------------~~~~~~~~i~~~l~~~~~~vi~~SAk~g~G-v~~Ll~~l~~~ 129 (547)
-..+..+++.+.++. .+++++||++|+| |+++|+.++..
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~--~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGA--EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCC--CEEEECccCcCCcCHHHHHHHHHHH
Confidence 011223444444442 3689999999995 99999998863
No 207
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.6e-11 Score=109.11 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=94.7
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcEEeeeecCCCCCCCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpiIvviNKiDl~~~~~-- 90 (547)
..+.+++++|||.|++.+...+..+++.+++.||++|.++..+....+-|..... .+.|+|+|.||||+.+.+.
T Consensus 66 ~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis 145 (193)
T KOG0093|consen 66 SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVIS 145 (193)
T ss_pred cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeee
Confidence 3467899999999999999999999999999999999999888888777754433 4899999999999977653
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+...++.+.+|+ +++++|||.+.||+++|+.++..+..
T Consensus 146 ~e~g~~l~~~LGf---efFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 146 HERGRQLADQLGF---EFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred HHHHHHHHHHhCh---HHhhhcccccccHHHHHHHHHHHHHH
Confidence 3334566777887 78999999999999999999887644
No 208
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.28 E-value=1.6e-11 Score=114.31 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=79.8
Q ss_pred EEeCCCc----cchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHh
Q 008991 25 LIDTPGH----VDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSM 100 (547)
Q Consensus 25 liDTPGh----~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~ 100 (547)
+|||||. .++..++..++..+|++++|+|++++.+..+...+. ...+.|+++++||+|+++.+.+...+.+. .
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~--~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~-~ 117 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLD--IGVSKRQIAVISKTDMPDADVAATRKLLL-E 117 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHh--ccCCCCeEEEEEccccCcccHHHHHHHHH-H
Confidence 7999996 456666677789999999999999887665543333 23578999999999998766554443333 3
Q ss_pred cCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 101 FDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 101 l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
++.. .|++++||++|.|++++++.+.+.++.
T Consensus 118 ~~~~-~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 118 TGFE-EPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred cCCC-CCEEEEECCCccCHHHHHHHHHHhchh
Confidence 4442 489999999999999999999888754
No 209
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.27 E-value=6.6e-12 Score=109.75 Aligned_cols=141 Identities=21% Similarity=0.198 Sum_probs=102.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~- 89 (547)
+.++..+++++|||+|++.|...+..+++.+|+.+|+.|.++..++.+.+.|.. ..+ ..+.+.++.||+|+...+
T Consensus 41 ~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~ 120 (192)
T KOG0083|consen 41 DMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERA 120 (192)
T ss_pred ccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhc
Confidence 446788999999999999999999999999999999999999999988776632 222 356789999999995432
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEE
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVIC 158 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~ 158 (547)
+.+--+.+.+.+++ |+.++||++|.||+..|-+|.+.+...........++.-.++..|.++|.|+
T Consensus 121 v~~ddg~kla~~y~i---pfmetsaktg~nvd~af~~ia~~l~k~~~~~~~~~~~~~~~~v~~~~k~eia 187 (192)
T KOG0083|consen 121 VKRDDGEKLAEAYGI---PFMETSAKTGFNVDLAFLAIAEELKKLKMGAPPEGEFADHDSVADEGKGEIA 187 (192)
T ss_pred cccchHHHHHHHHCC---CceeccccccccHhHHHHHHHHHHHHhccCCCCCCccccchhHHhcCCCccc
Confidence 22224566777776 7899999999999999988887654322111111122233455566666554
No 210
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.27 E-value=1.6e-11 Score=119.87 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=85.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh------cCCcEEeeeecCCCCCCCH-
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE------SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~------~~lpiIvviNKiDl~~~~~- 90 (547)
..+.++||||||+..|...+...++.||++|+|+|+++..+.+....|.. +.. .+.|+++|+||+|+...+.
T Consensus 48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence 46899999999999999999999999999999999998766666554432 222 2457999999999964321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+..+++.+.++. +++++||++|.|++++|++|+..+.
T Consensus 128 ~~~~~~~~~~~~~~---~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 128 KDDKHARFAQANGM---ESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred CHHHHHHHHHHcCC---EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2223445554543 6789999999999999999998764
No 211
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.27 E-value=2.6e-11 Score=119.00 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=84.7
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHH-HHHHHh---cCCcEEeeeecCCCCCC-----
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVAN-FYLAFE---SELTIIPVINKIDQPTA----- 88 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~---~~lpiIvviNKiDl~~~----- 88 (547)
...+.++||||||+..|......+++.+|++|+|+|+++..+.+.... |....+ .++|+|+|+||+|+.+.
T Consensus 41 ~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~ 120 (220)
T cd04126 41 WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAG 120 (220)
T ss_pred eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccc
Confidence 356889999999999999999999999999999999998777776543 333332 36889999999999651
Q ss_pred --------------CH--HHHHHHHHHhcC-----------CCCccceeccccccccccccHHHHHhhCC
Q 008991 89 --------------DP--DRVKAQLKSMFD-----------LDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 89 --------------~~--~~~~~~i~~~l~-----------~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+. .+...++.+..+ ....+++++||++|.||+++|+.+++.+.
T Consensus 121 ~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 121 QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 10 111223333332 11247899999999999999999997653
No 212
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.27 E-value=2.4e-11 Score=115.78 Aligned_cols=109 Identities=20% Similarity=0.271 Sum_probs=80.2
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHH----hcCCcEEeeeecCCCCCCCHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAF----ESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~----~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
.++.+++|||||+.+|...+..++..+|++++|+|+++....+.. ..+.... ..+.|+++++||+|+......
T Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~-- 138 (190)
T cd00879 61 GNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE-- 138 (190)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH--
Confidence 457899999999999998889999999999999999875443322 2222222 246899999999999654222
Q ss_pred HHHHHHhcCC----------------CCccceeccccccccccccHHHHHhhC
Q 008991 94 KAQLKSMFDL----------------DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 94 ~~~i~~~l~~----------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+++++.++. ...+++++||++|.|+++++++|.+.+
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 139 -EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred -HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 233333321 123589999999999999999998753
No 213
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.27 E-value=2.6e-11 Score=111.41 Aligned_cols=111 Identities=23% Similarity=0.283 Sum_probs=84.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-H---hcCCcEEeeeecCCCCCCCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-F---ESELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~---~~~lpiIvviNKiDl~~~~~-- 90 (547)
.+..+.+++|||||+..|...+...+..+|++++|+|++++.+.+....|... . ..++|+++|+||+|+.....
T Consensus 45 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~ 124 (162)
T cd04123 45 GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS 124 (162)
T ss_pred CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC
Confidence 45567899999999999999888889999999999999988776665555322 1 23689999999999974321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
....+++...++ .+++++||++|.|++++++++.+.+
T Consensus 125 ~~~~~~~~~~~~---~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 125 KSEAEEYAKSVG---AKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 222333333343 3679999999999999999998754
No 214
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.27 E-value=1.2e-11 Score=115.79 Aligned_cols=114 Identities=20% Similarity=0.182 Sum_probs=84.1
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHH--hcCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAF--ESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~--~~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++|||||+.+|.......++.+|++++|+|.++..+.+... .| .... ..++|+++|+||+|+.+...
T Consensus 42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~ 121 (174)
T cd04135 42 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPK 121 (174)
T ss_pred EECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChh
Confidence 34666788999999999999888888899999999999999876666543 33 2222 35799999999999864321
Q ss_pred H--------------HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 D--------------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~--------------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. +..+.+...++ ..+++++||++|.|++++|+.++..+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIG--AHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcC--CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 1 11122223233 34689999999999999999998753
No 215
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.27 E-value=2.6e-11 Score=113.57 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=87.1
Q ss_pred EeCCCceEEEEEeCCCccchHH-HHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh----cCCcEEeeeecCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSY-EVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE----SELTIIPVINKIDQPTA 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~-~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~lpiIvviNKiDl~~~ 88 (547)
..++..+.+++|||||+.+|.. .+...++.+|++++|+|+++..+.+....|.. +.. .++|+++|+||+|+.+.
T Consensus 45 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 45 EIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred EECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 3466778999999999999974 56777889999999999999888888766653 332 35899999999998654
Q ss_pred CH--HHHHHHHHHhcCCCCccceeccccc---cccccccHHHHHhhC
Q 008991 89 DP--DRVKAQLKSMFDLDPSEALLTSAKT---GQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~--~~~~~~i~~~l~~~~~~vi~~SAk~---g~Gv~~Ll~~l~~~i 130 (547)
+. ....+++.+..+ .+++++||++ +.|++++|..+++.+
T Consensus 125 ~~~~~~~~~~~~~~~~---~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 125 IQVPTDLAQRFADAHS---MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCCHHHHHHHHHHcC---CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 32 233444544443 4789999999 889999999988765
No 216
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.27 E-value=2.4e-11 Score=115.68 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHH----hcCCcEEeeeecCCCCCC-CHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAF----ESELTIIPVINKIDQPTA-DPD 91 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~----~~~lpiIvviNKiDl~~~-~~~ 91 (547)
.+++.+++|||||+..+...+..++..+|++++|+|+++..+.... ..+.... ..+.|+++|+||+|++.+ +.+
T Consensus 58 ~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~ 137 (184)
T smart00178 58 IGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASED 137 (184)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHH
Confidence 3568899999999999999999999999999999999875433332 2232222 257899999999999754 333
Q ss_pred HHHHHHHHhcCC------------CCccceeccccccccccccHHHHHhh
Q 008991 92 RVKAQLKSMFDL------------DPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 92 ~~~~~i~~~l~~------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
++.+.+++ ....++++||++|.|+++++++|.+.
T Consensus 138 ----~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 138 ----ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ----HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 33334432 23458999999999999999999765
No 217
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.27 E-value=3.5e-11 Score=111.88 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=85.9
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh---cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE---SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.+++|||||+.+|...+..++..+|++++|+|.++..+.+....|... .. .++|+++|.||+|+...+.
T Consensus 44 ~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v 123 (161)
T cd04117 44 VDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQV 123 (161)
T ss_pred ECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCC
Confidence 355668899999999999999999999999999999999987666665555332 11 3689999999999965431
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
......+.+.++ .+++++||++|.|++++|++|.+.
T Consensus 124 ~~~~~~~~~~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 124 GDEQGNKLAKEYG---MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 233444444444 468999999999999999999764
No 218
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.26 E-value=1.9e-11 Score=117.80 Aligned_cols=110 Identities=23% Similarity=0.203 Sum_probs=81.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHH-HHHh--cCCcEEeeeecCCCCCC--
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFY-LAFE--SELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~-~~~~--~~lpiIvviNKiDl~~~-- 88 (547)
..++..+.++||||+|+.+. ....+++.||++++|+|.++..+.+... .|. .... .+.|+++|+||+|+...
T Consensus 60 ~~~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~ 137 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADL 137 (195)
T ss_pred eeCCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 35677899999999999763 3345678999999999999987777764 353 3332 36899999999998642
Q ss_pred -----------------C--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 89 -----------------D--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 89 -----------------~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
+ ..+..+++.+.++. +++++||++|.||+++|+.+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~---~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 138 DEVNRARRPLARPIKNADILPPETGRAVAKELGI---PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred chhhhcccccccccccCCccCHHHHHHHHHHhCC---EEEEcCCCCCCCHHHHHHHHHHh
Confidence 1 12223445554553 78999999999999999998763
No 219
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.25 E-value=3.4e-11 Score=114.75 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=86.3
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh---cCCcEEeeeecCCCCCCCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE---SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~lpiIvviNKiDl~~~~~-- 90 (547)
+++.+.+++|||||+.+|...+...+..+|++++|+|+++..+......|... .. .+.|+++++||+|+.+...
T Consensus 45 ~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~ 124 (188)
T cd04125 45 ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVD 124 (188)
T ss_pred CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCC
Confidence 56678899999999999999999999999999999999987666665555332 22 3578999999999864321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
......+.+.+++ +++++||++|.|++++|+.|.+.+.
T Consensus 125 ~~~~~~~~~~~~~---~~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 125 SNIAKSFCDSLNI---PFFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred HHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223344444443 6899999999999999999988764
No 220
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.25 E-value=4.5e-11 Score=108.75 Aligned_cols=108 Identities=24% Similarity=0.270 Sum_probs=81.6
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHhc---CCcEEeeeecCCCC--CCCH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFES---ELTIIPVINKIDQP--TADP 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~---~lpiIvviNKiDl~--~~~~ 90 (547)
++..+.+++|||||+..|...+...++.+|++++|+|+++..+.+....|. ..... +.|+++++||+|+. ....
T Consensus 45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 124 (159)
T cd00154 45 DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS 124 (159)
T ss_pred CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc
Confidence 445688999999999999999999999999999999998865555544443 33333 48999999999995 2222
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHH
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
.+...++... ...+++.+||++|.|+++++++|.
T Consensus 125 ~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQQFAKE---NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHh
Confidence 2223333332 235799999999999999999885
No 221
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.24 E-value=1.5e-11 Score=133.05 Aligned_cols=115 Identities=24% Similarity=0.248 Sum_probs=87.8
Q ss_pred CCCCCCeEEEe-----CCCceEEEEEeCCCccchHHH--------HHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 6 ELNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSYE--------VSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 6 ~s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~~--------~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
.+++||+|++. .-.++.+++|||||+.++... ....+..+|++++|+|++++.+.+....|.. ..
T Consensus 243 v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~ 320 (449)
T PRK05291 243 VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LK 320 (449)
T ss_pred cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cC
Confidence 36789999764 224567899999999875432 3346788999999999998877776666654 56
Q ss_pred CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 73 ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+.|+++|+||+|+....... .....+++++||++|.|+++|+++|.+.++
T Consensus 321 ~~piiiV~NK~DL~~~~~~~---------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 321 DKPVIVVLNKADLTGEIDLE---------EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred CCCcEEEEEhhhccccchhh---------hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 78999999999996543211 112346899999999999999999998774
No 222
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.24 E-value=2.1e-11 Score=114.52 Aligned_cols=111 Identities=21% Similarity=0.158 Sum_probs=82.0
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH--HHHHHHh--cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA--NFYLAFE--SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~--~~~~~~~--~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.+++|||||+.+|...+..+++.+|++++|+|.++..+.+... ++..... .++|+++++||+|+....
T Consensus 42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 42 LVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred EECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 34566788999999999999888888889999999999999877766542 3333333 368999999999985421
Q ss_pred -----------H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHH
Q 008991 90 -----------P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 90 -----------~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
. .+....+.+.++ ..+++++||++|.|++++++.++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIG--ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhC--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 0 111223333333 24789999999999999999875
No 223
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.24 E-value=3.5e-11 Score=109.81 Aligned_cols=114 Identities=26% Similarity=0.336 Sum_probs=83.8
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHHH--------HHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSYE--------VSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~~--------~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|.+. ...++.+++|||||+.++... ....+..+|++++|+|+++.........+.. ..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~ 107 (157)
T cd04164 30 SDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PAD 107 (157)
T ss_pred cCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcC
Confidence 4677877643 234578999999999876432 3456778999999999998665555544443 568
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.|+++|+||+|+...... .......+++++||+++.|+++++++|.+.+
T Consensus 108 ~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 108 KPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 999999999999754322 1112234789999999999999999987654
No 224
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.24 E-value=5.3e-11 Score=110.43 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=93.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC-CcEEeeeecCCCCCCCHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE-LTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~-lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
.++.++|.|||||.+|...|.-.++.++++|++||++.+......+.+......+ +|+++++||.|+.++.+.+...++
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~ 145 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREA 145 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHH
Confidence 4578999999999999999999999999999999999988876677777777777 999999999999998765433333
Q ss_pred HHhcCCCCccceeccccccccccccHHHHHhh-CCCC
Q 008991 98 KSMFDLDPSEALLTSAKTGQGLEHVLPAVIER-IPPP 133 (547)
Q Consensus 98 ~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~-ip~p 133 (547)
...- ....|++.++|..++|..+.++.+... .+.+
T Consensus 146 l~~~-~~~~~vi~~~a~e~~~~~~~L~~ll~~~~~~~ 181 (187)
T COG2229 146 LKLE-LLSVPVIEIDATEGEGARDQLDVLLLKDLLGS 181 (187)
T ss_pred HHhc-cCCCceeeeecccchhHHHHHHHHHhhcccCc
Confidence 3221 125689999999999999999988776 4443
No 225
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.23 E-value=5.3e-11 Score=112.27 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=86.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.+++|||||+.+|......++..+|++++|+|.++..+.+....| .... ..++|+++|+||+|+...+.
T Consensus 44 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 123 (180)
T cd04137 44 YKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ 123 (180)
T ss_pred ECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc
Confidence 355668899999999999999999999999999999999998777665444 2222 24689999999999864321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
....+.+.+.++ .+++++||++|.|+.++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 124 VSTEEGKELAESWG---AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred cCHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 112233444443 47899999999999999999997653
No 226
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.22 E-value=2.7e-11 Score=115.74 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=84.1
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh--cCCcEEeeeecCCCCCCCH-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE--SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~--~~lpiIvviNKiDl~~~~~- 90 (547)
..++..+.+++|||||+.+|.......+..+|++++|+|+++..+.+....|. .... .+.|+++|+||+|+.....
T Consensus 44 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 123 (193)
T cd04118 44 VVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS 123 (193)
T ss_pred EECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccc
Confidence 34667788999999999999888888888999999999998876665544443 3332 2689999999999854321
Q ss_pred -----HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 -----DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 -----~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
....+++...++ .+++++||++|.|++++++++.+.+
T Consensus 124 ~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 124 LRQVDFHDVQDFADEIK---AQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred cCccCHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111223333333 3689999999999999999999766
No 227
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.22 E-value=1.6e-11 Score=110.67 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=90.2
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh-----cCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE-----SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~lpiIvviNKiDl~~~~ 89 (547)
.++|+.+++.||||+|++.|...+..+++.|.|+|+|.|.+...++..+.+|....+ .++-.++|.||+|..+.+
T Consensus 54 ~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R 133 (209)
T KOG0080|consen 54 QVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER 133 (209)
T ss_pred EEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc
Confidence 458899999999999999999999999999999999999999888888888855433 356688999999987543
Q ss_pred HHHHHH--HHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 PDRVKA--QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ~~~~~~--~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.-...+ .+.... ..-++++||++.+||+..|+.+++.+-
T Consensus 134 ~V~reEG~kfAr~h---~~LFiE~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 134 VVDREEGLKFARKH---RCLFIECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred cccHHHHHHHHHhh---CcEEEEcchhhhccHHHHHHHHHHHHh
Confidence 211111 122222 235799999999999999999998764
No 228
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.21 E-value=4.1e-11 Score=136.71 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=92.9
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHHH----------HHHHH--hhcCEEEEEEECCCCCchhhHHHHHHH
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSYE----------VSRSL--AACQGALLVVDAAQGVQAQTVANFYLA 69 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~~----------~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~ 69 (547)
+|+||+|++. +..++.++++||||+.+|... ...++ ..+|++++|+|+++... ....+.++
T Consensus 31 gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql 108 (772)
T PRK09554 31 GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQL 108 (772)
T ss_pred CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHH
Confidence 6899999975 346678999999999887531 11222 36899999999988543 34455677
Q ss_pred HhcCCcEEeeeecCCCCC-CCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 70 FESELTIIPVINKIDQPT-ADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~-~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+.++|+++|+||+|+.+ .......+++++.++. |++++||++|.|++++++.+.+..+
T Consensus 109 ~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~---pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 109 LELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC---PVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred HHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC---CEEEEEeecCCCHHHHHHHHHHhhh
Confidence 788999999999999863 3344445777777775 7899999999999999999987653
No 229
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.21 E-value=7.9e-11 Score=112.57 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=90.7
Q ss_pred CCCCCeEEEeCC--CceEEEEEeCCCc----------cchHHHHHHHHhhc---CEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 7 LNGPGTSEAHNP--SSFLLNLIDTPGH----------VDFSYEVSRSLAAC---QGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~~~~--~~~~l~liDTPGh----------~df~~~~~~~l~~a---D~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
++++|+|+.... .+..+.||||||+ ..|......++..+ +++++|+|+..+........+..+..
T Consensus 54 ~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~ 133 (196)
T PRK00454 54 SKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE 133 (196)
T ss_pred cCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 567888876532 2367899999996 33444555555554 67888999988776666666666677
Q ss_pred cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 72 SELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.++|+++++||+|+.+.. .+...+++.+.++....+++++||++|.|++++++.|.+.+.
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 899999999999986542 334445555555433457899999999999999999987664
No 230
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.21 E-value=4.9e-11 Score=111.76 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=81.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHH-HHh--cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYL-AFE--SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~-~~~--~~lpiIvviNKiDl~~~~~ 90 (547)
..+++.+.+++|||||+.+|......++..+|++++|+|.++..+.+.. ..|.. ... .++|+++|+||+|+...+.
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 122 (175)
T cd01870 43 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122 (175)
T ss_pred EECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh
Confidence 3466778899999999999988777788999999999999876554444 23322 222 3789999999999864321
Q ss_pred H--------------HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 D--------------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~--------------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. .-.+++...++ ..+++++||++|.|++++|++|.+..
T Consensus 123 ~~~~i~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 123 TRRELAKMKQEPVKPEEGRDMANKIG--AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcC--CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 0 01122222222 34789999999999999999998653
No 231
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.21 E-value=4.6e-11 Score=106.35 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=93.3
Q ss_pred EEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC---CcEEeeeecCCCCCCC
Q 008991 13 SEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE---LTIIPVINKIDQPTAD 89 (547)
Q Consensus 13 T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~---lpiIvviNKiDl~~~~ 89 (547)
|.+++|..+++.||||+|++.|......+.+..+++++|+|.+.+.++.+..-|..-.+.+ +|.++|.||.|.++.+
T Consensus 49 Tv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 49 TVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR 128 (198)
T ss_pred EeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccce
Confidence 5677899999999999999999999999999999999999999999999877665554444 6799999999998764
Q ss_pred HHHH--HHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRV--KAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~--~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.-.. ...+....| .+++++|||..+|+++.|..|...+
T Consensus 129 vV~t~dAr~~A~~mg---ie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 129 VVDTEDARAFALQMG---IELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred eeehHHHHHHHHhcC---chheehhhhhcccchHHHHHHHHHH
Confidence 3221 122222234 3679999999999999998887654
No 232
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.21 E-value=8e-11 Score=109.99 Aligned_cols=122 Identities=23% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCCCeEEEeC-----CC-ceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCC------chhhHHHH-
Q 008991 7 LNGPGTSEAHN-----PS-SFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGV------QAQTVANF- 66 (547)
Q Consensus 7 s~~pG~T~~~~-----~~-~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~------~~qt~~~~- 66 (547)
++.|++|.+.. .. +..+++|||||+.+ +...+...+..+|++++|+|+++.. .......|
T Consensus 24 ~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 103 (176)
T cd01881 24 ANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILN 103 (176)
T ss_pred cCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHH
Confidence 45677776542 23 67889999999843 2224456678899999999998863 22222222
Q ss_pred HHHH----------hcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 67 YLAF----------ESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 67 ~~~~----------~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.... ..+.|+++|+||+|+...+...... ..........+++++||++|.|++++++.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 104 AELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 1121 1478999999999996543211110 111222234578999999999999999998764
No 233
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.20 E-value=6.5e-11 Score=108.56 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=83.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHHh----cCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAFE----SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.+++|||||+.++.......+..+|++++|+|.++..+..... ++..... .+.|+++|+||+|+.....
T Consensus 42 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 121 (160)
T cd00876 42 VDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ 121 (160)
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce
Confidence 3455688999999999999999999999999999999998765444333 2322222 3799999999999975321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+...++...++ .+++++||++|.|+++++++|.+.+
T Consensus 122 ~~~~~~~~~~~~~~---~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 122 VSKEEGKALAKEWG---CPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred ecHHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHhhC
Confidence 122233333333 4789999999999999999998753
No 234
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.20 E-value=3.8e-11 Score=111.77 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=81.5
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHH-HHHHh--cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANF-YLAFE--SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~--~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++|||||+.+|.......+..+|++++|+|+++..+.+.. ..| ..... .++|+++|+||+|+...+.
T Consensus 42 ~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 42 TVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred EECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 4466778999999999999877777778899999999999886555442 222 22222 3699999999999976542
Q ss_pred H-------------HHHHHHHHhcCCCCccceeccccccccccccHHHHHh
Q 008991 91 D-------------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 91 ~-------------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
. ....++...++ ..+++++||++|.|++++++.|++
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 122 TLKKLEKGKEPITPEEGEKLAKEIG--AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhcccCCCccCHHHHHHHHHHhC--CeEEEEeecCCCCCHHHHHHHHhh
Confidence 2 11122222233 237899999999999999999875
No 235
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=5.8e-11 Score=111.47 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=86.3
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HH-hcCCcEEeeeecCCCCCCCH--
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AF-ESELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~-~~~lpiIvviNKiDl~~~~~-- 90 (547)
..++..+.+++|||+|...|......++..||++++|+|+++..+.+....|.. .. ..++|+++|+||+|+.+...
T Consensus 48 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~ 127 (169)
T cd01892 48 EVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRY 127 (169)
T ss_pred EECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccccc
Confidence 446777889999999999998888888999999999999988655444433332 21 23799999999999964321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
....+++.+.++.. +++++||++|.|++++++.+.+.+-
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 128 EVQPDEFCRKLGLP--PPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccCHHHHHHHcCCC--CCEEEEeccCccHHHHHHHHHHHhh
Confidence 11234555556552 4589999999999999999988654
No 236
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=8.2e-11 Score=122.38 Aligned_cols=125 Identities=21% Similarity=0.213 Sum_probs=86.7
Q ss_pred CCCCCeEEEeC------CCceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh-
Q 008991 7 LNGPGTSEAHN------PSSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE- 71 (547)
Q Consensus 7 s~~pG~T~~~~------~~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~- 71 (547)
+++|+||.... .....+.+|||||..+ +...+.+.+..||++++|+|+++....+....|. .+..
T Consensus 186 a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~ 265 (335)
T PRK12299 186 ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKY 265 (335)
T ss_pred CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHh
Confidence 46788888642 1345789999999853 4556677888999999999998754455544443 2222
Q ss_pred ----cCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 72 ----SELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 72 ----~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+.|+++|+||+|+..+.... .+++.........+++++||++++|+++++++|.+.++.
T Consensus 266 ~~~L~~kp~IIV~NKiDL~~~~~~~-~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 266 SPELADKPRILVLNKIDLLDEEEER-EKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred hhhcccCCeEEEEECcccCCchhHH-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 368999999999997543211 111222111122478999999999999999999987753
No 237
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.20 E-value=1e-10 Score=114.87 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=85.1
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHH---hcCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAF---ESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~---~~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.++||||+|+..|...+..++..+|++++|+|.++..+.+.. ..|.... ..+.|+|+|+||+|+.....
T Consensus 43 ~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~ 122 (222)
T cd04173 43 EIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLA 122 (222)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchh
Confidence 4577889999999999999999888999999999999999998777665 4454322 24789999999999954210
Q ss_pred --------------HHHHHHHHHhcCCCCccceecccccccc-ccccHHHHHhh
Q 008991 91 --------------DRVKAQLKSMFDLDPSEALLTSAKTGQG-LEHVLPAVIER 129 (547)
Q Consensus 91 --------------~~~~~~i~~~l~~~~~~vi~~SAk~g~G-v~~Ll~~l~~~ 129 (547)
.+..+.+.+.++ ..+++++||+++.| |+++|+..+..
T Consensus 123 ~~~~~~~~~~~pIs~e~g~~~ak~~~--~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 123 TLRELSKQRLIPVTHEQGTVLAKQVG--AVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hhhhhhhccCCccCHHHHHHHHHHcC--CCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 111223333333 24789999999985 99999988874
No 238
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.1e-11 Score=114.03 Aligned_cols=113 Identities=22% Similarity=0.203 Sum_probs=91.5
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHhc---CCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFES---ELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~---~lpiIvviNKiDl~~~~- 89 (547)
.++++.++.+||||+|++.|....+.+++.|-||+||+|.+...+.+....| ..++.+ ++++++|.||+||.+.+
T Consensus 57 ~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lra 136 (222)
T KOG0087|consen 57 NVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRA 136 (222)
T ss_pred eecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccc
Confidence 4588899999999999999999999999999999999999998888876555 555554 68899999999997632
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+.+....+.+..++ .++++||+.+.||++.|+.++..+
T Consensus 137 V~te~~k~~Ae~~~l---~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 137 VPTEDGKAFAEKEGL---FFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred cchhhhHhHHHhcCc---eEEEecccccccHHHHHHHHHHHH
Confidence 23334445554444 679999999999999888877655
No 239
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.19 E-value=8e-11 Score=114.81 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=86.1
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh----cCCcEEeeeecCCCCCCCH-
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE----SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~----~~lpiIvviNKiDl~~~~~- 90 (547)
++..+.+++|||||+..|.......+..+|++++|+|.++..+.+....|... .. .+.|+++++||+|+.....
T Consensus 48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v 127 (211)
T cd04111 48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV 127 (211)
T ss_pred CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc
Confidence 35678999999999999999888999999999999999987666665544332 22 2467899999999965321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+..+++.+.++ .+++++||++|.|++++++.|++.+.
T Consensus 128 ~~~~~~~~~~~~~---~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 128 TREEAEKLAKDLG---MKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CHHHHHHHHHHhC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 223445555554 47899999999999999999998663
No 240
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.19 E-value=4.8e-11 Score=132.98 Aligned_cols=120 Identities=21% Similarity=0.229 Sum_probs=88.7
Q ss_pred CCCCCCeEEEeC-----CCceEEEEEeCCCccchHHH-----HH-HHH--hhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 6 ELNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSYE-----VS-RSL--AACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 6 ~s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~~-----~~-~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
.+|+||+|++.. .++..+++|||||+.+|... +. ..+ ..+|++++|+|+++.. +.........+.
T Consensus 21 v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~ 98 (591)
T TIGR00437 21 VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLEL 98 (591)
T ss_pred ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhc
Confidence 368999998753 24567899999999887542 22 222 3689999999998732 234444555678
Q ss_pred CCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 73 ELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
++|+++|+||+|+.+.. .....+++.+.++. +++++||++|.|++++++.+.+..
T Consensus 99 ~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~---pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 99 GIPMILALNLVDEAEKKGIRIDEEKLEERLGV---PVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCEEEEEehhHHHHhCCChhhHHHHHHHcCC---CEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999985432 22234667777764 789999999999999999998764
No 241
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.18 E-value=6.2e-11 Score=110.22 Aligned_cols=109 Identities=22% Similarity=0.190 Sum_probs=79.6
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCC
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTA 88 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~ 88 (547)
...+++.+.+.+|||+|+.+. .+++.+|++++|+|.++..+.+....| ..... .++|+++|.||+|+...
T Consensus 40 i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 40 VLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred EEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 455677788999999999763 356789999999999998888885544 33332 35899999999998532
Q ss_pred CH----HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 89 DP----DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 89 ~~----~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
+. .+..+++.+.. ....++++||++|.||+++|+.+++.
T Consensus 115 ~~~~v~~~~~~~~~~~~--~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 115 NPRVIDDARARQLCADM--KRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CCcccCHHHHHHHHHHh--CCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 11 11122333322 23578999999999999999999764
No 242
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.18 E-value=2.2e-10 Score=103.60 Aligned_cols=110 Identities=27% Similarity=0.257 Sum_probs=83.1
Q ss_pred ceEEEEEeCCCccchH-------HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHH
Q 008991 20 SFLLNLIDTPGHVDFS-------YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 20 ~~~l~liDTPGh~df~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
...+.+|||||+.++. ..+...++.+|++++|+|+..........++......+.|+++|+||+|+...+...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~ 123 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEE 123 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHH
Confidence 4578999999998764 344567889999999999999887777665666677899999999999997643322
Q ss_pred HHH--HHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 93 VKA--QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 93 ~~~--~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
... ...........+++++||+++.|++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 124 ELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 111 1112223345689999999999999999999765
No 243
>PLN03108 Rab family protein; Provisional
Probab=99.18 E-value=1.3e-10 Score=113.16 Aligned_cols=113 Identities=23% Similarity=0.245 Sum_probs=86.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++|||||+.+|...+...+..+|++++|+|+++..+.+....|.. ... .++|+++++||+|+.....
T Consensus 49 ~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 49 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (210)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccC
Confidence 345667889999999999999999999999999999999998776666544432 222 3689999999999965321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
....+++.+.++ .+++++||++|.|++++|++++..+
T Consensus 129 ~~~~~~~~~~~~~~---~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 129 VSTEEGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred CCHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222333444444 3789999999999999999988765
No 244
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.17 E-value=1.7e-10 Score=105.14 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHHHh----cCCcEEeeeecCCCCCCCH-HH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLAFE----SELTIIPVINKIDQPTADP-DR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~----~~lpiIvviNKiDl~~~~~-~~ 92 (547)
..+.+++|||||+..|...+...+..+|++++|+|+++...... ..++..... .++|+++|+||+|+.+... ..
T Consensus 42 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 121 (159)
T cd04159 42 GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHH
Confidence 34789999999999999999999999999999999987544333 233333322 4789999999999876532 22
Q ss_pred HHHHHHH-hcCCCCccceeccccccccccccHHHHHh
Q 008991 93 VKAQLKS-MFDLDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 93 ~~~~i~~-~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
..+.+.. .......+++++||++|.|+++++++|.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 122 LIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 2222210 11112246899999999999999999865
No 245
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7.8e-11 Score=106.05 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=86.8
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCCCCH--
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~~~~-- 90 (547)
+..+.+++|||+|++.|...+...++.|=+.+|++|.+..-++-...+|. ++.. .+-.++++.||.|+++.+.
T Consensus 64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 45678899999999999999999999999999999999877777766663 3332 2444999999999987653
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
++...++.+.+++ |++++||.+|.||++..+.+...+
T Consensus 144 ~~qa~~La~kygl---PYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 144 EDQAAALADKYGL---PYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHHHHHhCC---CeeeeccccCcCHHHHHHHHHHHH
Confidence 3345667777877 789999999999988666555443
No 246
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.17 E-value=1.2e-10 Score=125.66 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=85.2
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccchHHH--------HHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSYE--------VSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~~--------~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||||++.. -+++.+++|||||+.++... ...++..+|++++|+|++++.+.+.. ++..+...+
T Consensus 232 s~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~ 310 (442)
T TIGR00450 232 SDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSK 310 (442)
T ss_pred CCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCC
Confidence 67899999752 24567899999999765432 23567889999999999988766655 555555568
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.|+++|+||+|+...+. +++.+.++ .+++.+||++ .||+++++.+.+.+
T Consensus 311 ~piIlV~NK~Dl~~~~~----~~~~~~~~---~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 311 KPFILVLNKIDLKINSL----EFFVSSKV---LNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred CCEEEEEECccCCCcch----hhhhhhcC---CceEEEEEec-CCHHHHHHHHHHHH
Confidence 99999999999965422 23333333 2578999998 58888888887765
No 247
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=8.4e-11 Score=105.19 Aligned_cols=113 Identities=20% Similarity=0.185 Sum_probs=85.8
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh---cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE---SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~lpiIvviNKiDl~~~~~ 90 (547)
++.++.+++++|||+|++.|..-...+++.|-+++||.|++...+...+.+|..- +. .++-+|++.||-|+.+.+.
T Consensus 52 nVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~ 131 (214)
T KOG0086|consen 52 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPERE 131 (214)
T ss_pred eecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhh
Confidence 3467889999999999999999999999999999999999999888888777433 22 3566889999999976543
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHh
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
-.. .+..+...-+..-+.++||++|+||++.|-....
T Consensus 132 Vtf-lEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 132 VTF-LEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred hhH-HHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 222 2222222222224689999999999997655444
No 248
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1e-10 Score=104.21 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=90.1
Q ss_pred eEEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEeeeecCCCCC
Q 008991 12 TSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIPVINKIDQPT 87 (547)
Q Consensus 12 ~T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIvviNKiDl~~ 87 (547)
.|.+++|+.+++++|||+|++.|...+..+++.|++.|||.|.+..+++.-+.-| ....+ .++-.|+|.||+|+.+
T Consensus 47 ktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 47 KTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred EEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 3667899999999999999999999999999999999999999998887775544 33322 3455799999999854
Q ss_pred CCHHHHHHHHHHhcC-CCCccceeccccccccccccHHHHHhhCC
Q 008991 88 ADPDRVKAQLKSMFD-LDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 88 ~~~~~~~~~i~~~l~-~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
. .++-+++.+.|. ....-++++||+...||+.||..+.-.+-
T Consensus 127 r--revp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 127 R--REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred h--hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 3 233344433332 12224689999999999999998876553
No 249
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.16 E-value=1.6e-10 Score=113.54 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=82.3
Q ss_pred EEEeCCCceEEEEEeCCCccchHHHHHHHHh-hcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCC
Q 008991 13 SEAHNPSSFLLNLIDTPGHVDFSYEVSRSLA-ACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQP 86 (547)
Q Consensus 13 T~~~~~~~~~l~liDTPGh~df~~~~~~~l~-~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~ 86 (547)
+..+++..+.+++|||||+.++. ....+. .+|++++|+|+++..+.+....|. .+.. .++|+|+|+||+|+.
T Consensus 42 ~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 42 TVSVDGEESTLVVIDHWEQEMWT--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEECCEEEEEEEEeCCCcchHH--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 34557778899999999998432 234556 899999999999876666544442 2322 368999999999986
Q ss_pred CCCH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 87 TADP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 87 ~~~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+. .+..+++...++ .+++++||++|.||+++++.+++.+.
T Consensus 120 ~~~~v~~~~~~~~a~~~~---~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 120 RSREVSVQEGRACAVVFD---CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ccceecHHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5431 111233444343 36899999999999999999998774
No 250
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.15 E-value=1.5e-11 Score=110.53 Aligned_cols=113 Identities=23% Similarity=0.251 Sum_probs=87.3
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpiIvviNKiDl~~~~~ 90 (547)
++.+....++||||+|++.|...=--+++.+||++||+|.++..++|-..+|..... ..+.+++|.||+|+...+.
T Consensus 56 n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~ 135 (218)
T KOG0088|consen 56 NVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ 135 (218)
T ss_pred ccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh
Confidence 445567889999999999998887788999999999999999999999888854332 3467999999999965432
Q ss_pred HH--HHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 DR--VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~~--~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
-. -.+...+..| ...+.+||+.+.||.++|+.|...+
T Consensus 136 Vt~qeAe~YAesvG---A~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 136 VTRQEAEAYAESVG---ALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hhHHHHHHHHHhhc---hhheecccccccCHHHHHHHHHHHH
Confidence 11 1122233333 3568999999999999999887654
No 251
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.15 E-value=7.5e-11 Score=124.06 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=91.3
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHHHH--------HHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEV--------SRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~--------~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
|+.||||||+ +=+++.+.++||+|..+-...+ ...+..||.+++|+|++++...+....+. ....+
T Consensus 246 TdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~ 324 (454)
T COG0486 246 TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKK 324 (454)
T ss_pred cCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccC
Confidence 6899999987 3367889999999987644433 35577899999999999986666666665 45568
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.|+++|+||+|+........ + +.. ...+++.+||++|+|++.|.++|.+.+..-
T Consensus 325 ~~~i~v~NK~DL~~~~~~~~---~-~~~--~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 325 KPIIVVLNKADLVSKIELES---E-KLA--NGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CCEEEEEechhcccccccch---h-hcc--CCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 89999999999977543211 1 111 123689999999999999999998887544
No 252
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.15 E-value=4e-10 Score=103.26 Aligned_cols=110 Identities=24% Similarity=0.257 Sum_probs=80.9
Q ss_pred CceEEEEEeCCCccchH--------HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC--
Q 008991 19 SSFLLNLIDTPGHVDFS--------YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~--------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-- 88 (547)
..+.+.+|||||+.+.. ......+..+|++++|+|+++.........+..+...+.|+++|+||+|+...
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~ 128 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE 128 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHH
Confidence 45788999999986533 34456688999999999999875555555556666678999999999999632
Q ss_pred CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 89 DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
...+..+.+....+ ..+++.+|++++.|++++++.|.+.+
T Consensus 129 ~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 129 DLLPLLEKLKELGP--FAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred HHHHHHHHHHhccC--CCceEEEEeccCCChHHHHHHHHhhC
Confidence 12333334433322 35789999999999999999997653
No 253
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.14 E-value=2.6e-10 Score=118.50 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=83.5
Q ss_pred CCCCCeEEEeC------CCceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCC---CchhhHHHHH-HH
Q 008991 7 LNGPGTSEAHN------PSSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQG---VQAQTVANFY-LA 69 (547)
Q Consensus 7 s~~pG~T~~~~------~~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g---~~~qt~~~~~-~~ 69 (547)
+++|+||.... +....+.||||||+.+ +...+.+.+..||++++|+|+++. ...+....|. .+
T Consensus 185 a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL 264 (329)
T TIGR02729 185 ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNEL 264 (329)
T ss_pred cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHH
Confidence 46677776421 1237889999999853 444566777889999999999864 2233333332 22
Q ss_pred Hh-----cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 70 FE-----SELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 70 ~~-----~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.. .+.|+++|+||+|+.... .++..+++.+.++ .+++++||++++|+++++++|.+.+
T Consensus 265 ~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~---~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 265 KKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG---KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC---CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 21 368999999999996542 2333344444443 3789999999999999999998765
No 254
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.14 E-value=3.1e-10 Score=106.10 Aligned_cols=118 Identities=21% Similarity=0.226 Sum_probs=82.8
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHH----HhcCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLA----FESELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~----~~~~lpiIvviN 81 (547)
++.|++.. ....+..+++|||||+..|...+...+..||++++|+|+++...... ...+... ...++|+++++|
T Consensus 44 ~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 123 (173)
T cd04155 44 PTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFAN 123 (173)
T ss_pred CCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 34564332 23345789999999999999999999999999999999987433322 2222222 234799999999
Q ss_pred cCCCCCCCHHHHHHHHHHhcCCC-----CccceeccccccccccccHHHHHh
Q 008991 82 KIDQPTADPDRVKAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
|+|+..... .+++.+.+++. ..+++++||++|.|+++++++|++
T Consensus 124 K~D~~~~~~---~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 124 KQDLATAAP---AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCccCCC---HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 999865432 12333344432 124789999999999999999864
No 255
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.13 E-value=1.2e-10 Score=105.53 Aligned_cols=99 Identities=21% Similarity=0.151 Sum_probs=69.9
Q ss_pred EEEeCCCcc----chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCH-HHHHHHHH
Q 008991 24 NLIDTPGHV----DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADP-DRVKAQLK 98 (547)
Q Consensus 24 ~liDTPGh~----df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~-~~~~~~i~ 98 (547)
++|||||+. .+...+...++.+|++++|+|++++.+.++..++.. .+.|+++|+||+|+.+... .+..+++.
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 114 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELL 114 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHH
Confidence 699999983 233333446789999999999999888777544332 2459999999999965321 12223333
Q ss_pred HhcCCCCccceeccccccccccccHHHHH
Q 008991 99 SMFDLDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 99 ~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
+..+. .+++++||++|.|++++++++.
T Consensus 115 ~~~~~--~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 115 ETAGA--EPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHcCC--CcEEEEecCCCCCHHHHHHHHh
Confidence 33332 3689999999999999999874
No 256
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=3.3e-10 Score=101.00 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=83.6
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-----HHHHhcCCcEEeeeecCCCCCCCHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-----YLAFESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-----~~~~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
+....+++|||||+.++.......+..+|++++|+|++++...+....| ......+.|+++++||+|+.......
T Consensus 42 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 42 GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 3467899999999999998888899999999999999988766665544 23344689999999999997654333
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHH
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
..............+++.+||.++.|+.+++++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 22111122222345789999999999999999875
No 257
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.12 E-value=3.4e-10 Score=120.10 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=85.9
Q ss_pred CCCCCeEEEe-----CCC-ceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCC---CCchhhHHHH-HHH
Q 008991 7 LNGPGTSEAH-----NPS-SFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQ---GVQAQTVANF-YLA 69 (547)
Q Consensus 7 s~~pG~T~~~-----~~~-~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~---g~~~qt~~~~-~~~ 69 (547)
|++|+||+.. ... ...+.|+||||..+ +...+.+.+..||++++|+|++. ....+....| ..+
T Consensus 187 s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL 266 (390)
T PRK12298 187 ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINEL 266 (390)
T ss_pred cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHH
Confidence 6789999864 222 34689999999854 44566678899999999999872 2222222222 333
Q ss_pred Hh-----cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 70 FE-----SELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 70 ~~-----~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.. .+.|.++|+||+|+.... .....+++.+.++.. .+++++||+++.|+++|++.|.+.++.
T Consensus 267 ~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~-~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 267 EKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWE-GPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCC-CCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 32 368999999999996432 222333444433321 268999999999999999999998864
No 258
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.10 E-value=4.7e-10 Score=108.31 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=71.7
Q ss_pred eEEEEEeCCCccch-HH-------HHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHH---hcCCcEEeeeecCCCCCC
Q 008991 21 FLLNLIDTPGHVDF-SY-------EVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAF---ESELTIIPVINKIDQPTA 88 (547)
Q Consensus 21 ~~l~liDTPGh~df-~~-------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~---~~~lpiIvviNKiDl~~~ 88 (547)
..+.+|||||+.+. .. .....+..+|++++|+|++++...+....|. ... ..+.|+++|+||+|+...
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 48899999998431 11 1123356799999999999876655443332 222 236899999999999664
Q ss_pred CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 89 DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.... ..+.....+++++||++|.|+++++++|...+
T Consensus 169 ~~~~------~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 169 EELE------ERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HHHH------HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 3221 11222345789999999999999999997653
No 259
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=5.1e-10 Score=119.57 Aligned_cols=121 Identities=24% Similarity=0.237 Sum_probs=85.0
Q ss_pred CCCCCeEEEeCC------CceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCC---CchhhHHHH-HHH
Q 008991 7 LNGPGTSEAHNP------SSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQG---VQAQTVANF-YLA 69 (547)
Q Consensus 7 s~~pG~T~~~~~------~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g---~~~qt~~~~-~~~ 69 (547)
+++|+||...+- .+..+.|+||||..+ +.....+.+..||++++|+|+++. ...+....| ..+
T Consensus 186 a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL 265 (424)
T PRK12297 186 ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKEL 265 (424)
T ss_pred ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHH
Confidence 467898886421 256799999999743 344556667789999999999753 122222222 222
Q ss_pred Hh-----cCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 70 FE-----SELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 70 ~~-----~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.. .+.|.++|+||+|+... ....+++.+.++ .+++++||+++.|+++|+++|.+.+..
T Consensus 266 ~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~---~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 266 KLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLG---PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred hhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22 37899999999998543 233455665555 478999999999999999999887643
No 260
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.08 E-value=1.9e-10 Score=106.35 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=91.5
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH--Hhc------CCcEEeeeecCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA--FES------ELTIIPVINKIDQPT 87 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~--~~~------~lpiIvviNKiDl~~ 87 (547)
+++..+.+++|||+|+++|...-...++.+|+++||+|....-+++++..|+.- ... ..|+|++.||+|+.+
T Consensus 53 Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 53 VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 477888999999999999999888999999999999999999999999999543 222 478999999999976
Q ss_pred CCH----HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 88 ADP----DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 88 ~~~----~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
... .+..+++...-| +.|++++|||.+.||++.|+.+......
T Consensus 133 ~~~r~VS~~~Aq~WC~s~g--nipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 133 GKSRQVSEKKAQTWCKSKG--NIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred CccceeeHHHHHHHHHhcC--CceeEEecccccccHHHHHHHHHHHHHh
Confidence 321 222333333332 4689999999999999999999876544
No 261
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.08 E-value=1.5e-10 Score=109.57 Aligned_cols=118 Identities=24% Similarity=0.327 Sum_probs=86.4
Q ss_pred CCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchh-hHHHHHHHH----hcCCcEEeeeec
Q 008991 9 GPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQ-TVANFYLAF----ESELTIIPVINK 82 (547)
Q Consensus 9 ~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~q-t~~~~~~~~----~~~lpiIvviNK 82 (547)
|-|++.+ +..+++.+++||.+|+..+...|..++..+|++|+|||+++....+ ....+..+. ..++|+++++||
T Consensus 45 T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK 124 (175)
T PF00025_consen 45 TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANK 124 (175)
T ss_dssp ESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEES
T ss_pred ccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecc
Confidence 3444443 3446789999999999999999999999999999999998754322 233333322 247999999999
Q ss_pred CCCCCCCHHHHHHHHHHhcC---C---CCccceeccccccccccccHHHHHhh
Q 008991 83 IDQPTADPDRVKAQLKSMFD---L---DPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 83 iDl~~~~~~~~~~~i~~~l~---~---~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.|++++.... ++.+.++ + .+..++.+||++|+|+.+.+++|.+.
T Consensus 125 ~D~~~~~~~~---~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 125 QDLPDAMSEE---EIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTSTTSSTHH---HHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccccCcchhh---HHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 9998764332 2333332 2 24468999999999999999999875
No 262
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=4.7e-10 Score=121.42 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=82.1
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCC----chhhHHHH----
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGV----QAQTVANF---- 66 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~----~~qt~~~~---- 66 (547)
+++|+||+.. +..+..|.|+||||..+ ...+..+.+..||++++|||++... ..+....|
T Consensus 187 adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL 266 (500)
T PRK12296 187 ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAEL 266 (500)
T ss_pred cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence 5789999863 33557899999999643 2334566778899999999997521 11111111
Q ss_pred -HHH----------HhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 67 -YLA----------FESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 67 -~~~----------~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
... ...+.|+|+|+||+|++++. ...+.+...+.-...+++++||+++.|+++|+++|.+.+.
T Consensus 267 ~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 267 AAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred HHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111 12468999999999997542 2222222222111247899999999999999999988664
No 263
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.06 E-value=1e-09 Score=104.04 Aligned_cols=126 Identities=18% Similarity=0.301 Sum_probs=97.5
Q ss_pred CCCCCCeEEEeCCC--ceEEEEEeCCCc----------cchHHHHHHHHh---hcCEEEEEEECCCCCchhhHHHHHHHH
Q 008991 6 ELNGPGTSEAHNPS--SFLLNLIDTPGH----------VDFSYEVSRSLA---ACQGALLVVDAAQGVQAQTVANFYLAF 70 (547)
Q Consensus 6 ~s~~pG~T~~~~~~--~~~l~liDTPGh----------~df~~~~~~~l~---~aD~ailVvDa~~g~~~qt~~~~~~~~ 70 (547)
.|++||.|+..+-- +-.+.|+|.||+ ..+...+..++. ...++++++|+..++.....+.+..+.
T Consensus 53 tSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~ 132 (200)
T COG0218 53 TSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLL 132 (200)
T ss_pred cCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHH
Confidence 38999999976421 113789999998 234445555554 367899999999999999999999999
Q ss_pred hcCCcEEeeeecCCCCCC-CHHHHHHHHHHhcCCCCc-c--ceeccccccccccccHHHHHhhCC
Q 008991 71 ESELTIIPVINKIDQPTA-DPDRVKAQLKSMFDLDPS-E--ALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~~-~~~~~~~~i~~~l~~~~~-~--vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+.++|+++++||+|.... ...+.+..+.+.++..+. . ++..|+.++.|++++.+.|.+++.
T Consensus 133 ~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 133 ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 999999999999998764 334556666665554332 2 788999999999999999988763
No 264
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.05 E-value=7.4e-10 Score=102.30 Aligned_cols=113 Identities=17% Similarity=0.245 Sum_probs=89.2
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.+.+|||+|+.+|.......+..+|++|+|+|.++..+.+....|..... .+.|++++.||.|+...+
T Consensus 42 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 42 SIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp EETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 446788999999999999999888889999999999999998877777666644322 258999999999987522
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+..+++.+.++ .+++++||+++.||.++|..+++.+
T Consensus 122 v~~~~~~~~~~~~~---~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 122 VSVEEAQEFAKELG---VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SCHHHHHHHHHHTT---SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1222344555554 4889999999999999999998754
No 265
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.05 E-value=7.2e-10 Score=116.17 Aligned_cols=115 Identities=28% Similarity=0.323 Sum_probs=76.9
Q ss_pred CCCCCeEEEeC------CCceEEEEEeCCCc-cc--------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH
Q 008991 7 LNGPGTSEAHN------PSSFLLNLIDTPGH-VD--------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF 70 (547)
Q Consensus 7 s~~pG~T~~~~------~~~~~l~liDTPGh-~d--------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~ 70 (547)
++.||+|++.. .++..+.||||||. .+ |.. +...+..||++++|+|+++....+....| ..+.
T Consensus 217 ~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~ 295 (351)
T TIGR03156 217 ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLE 295 (351)
T ss_pred ccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHH
Confidence 45677776541 13468899999998 22 322 23357789999999999987655443322 2222
Q ss_pred ---hcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 71 ---ESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 71 ---~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
..+.|+++|+||+|+... ... ..+.. + ..+++++||++|.|+++|++.|.+.
T Consensus 296 ~l~~~~~piIlV~NK~Dl~~~--~~v-~~~~~--~--~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 296 ELGAEDIPQLLVYNKIDLLDE--PRI-ERLEE--G--YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HhccCCCCEEEEEEeecCCCh--HhH-HHHHh--C--CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 237899999999999642 111 11111 1 1357999999999999999998764
No 266
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.04 E-value=8.9e-10 Score=93.27 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=68.1
Q ss_pred eEEEEeeeccc-cccEEEEEEEecCccccCCEEEEec---------CCCeeEEEEEEeecC-CcccccccccCcEEEEEe
Q 008991 142 RMLLLDSYYDE-YKGVICHVAVVDGTLRKGDKISSAA---------TGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVT 210 (547)
Q Consensus 142 ~~~v~~~~~d~-~~G~v~~~rV~~G~lk~gd~v~~~~---------~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~ 210 (547)
.+.+|++..++ +.|+++++||++|+|+.||.+.+.. .....++.++..+.+ ...+++++.||||+.+.
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~- 80 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV- 80 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE-
Confidence 57899999999 9999999999999999999998876 334577889988887 56899999999999886
Q ss_pred cccccccccccCccc
Q 008991 211 GMRSTKEARIGDTLY 225 (547)
Q Consensus 211 glk~~~~~~~Gdtl~ 225 (547)
|+ +++++|||.+
T Consensus 81 g~---~~~~~g~~~~ 92 (93)
T cd03700 81 GL---DQLKSGTTAT 92 (93)
T ss_pred CC---ccCceEeEec
Confidence 55 5678898754
No 267
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.04 E-value=8.7e-10 Score=99.91 Aligned_cols=111 Identities=22% Similarity=0.230 Sum_probs=89.3
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc--C----CcEEeeeecCCCCCCCH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES--E----LTIIPVINKIDQPTADP 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~----lpiIvviNKiDl~~~~~ 90 (547)
.|..++++||||+|++.|...+..+++++=|+++|+|.++..+++..++|....++ + +-+.+|..|+|+.+.+.
T Consensus 54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 46778999999999999999999999999999999999999999998888554333 2 22678999999975432
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+-.+.+....|. .++++||++|.||++.++.|.+.+
T Consensus 134 Vt~EEaEklAa~hgM---~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 134 VTAEEAEKLAASHGM---AFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred ccHHHHHHHHHhcCc---eEEEecccCCCcHHHHHHHHHHHH
Confidence 2223455555554 679999999999999999887754
No 268
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.03 E-value=1.4e-09 Score=98.23 Aligned_cols=105 Identities=27% Similarity=0.253 Sum_probs=74.5
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-Cchh------hHHHHHHHHhcCCcEEeeeecCCCCCCCHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-VQAQ------TVANFYLAFESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-~~~q------t~~~~~~~~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
.+.+++|||||+.+|...+......++.++.++|.... ...+ ....+..+. .+.|+++++||+|+...+...
T Consensus 49 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~ 127 (161)
T TIGR00231 49 TYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKT 127 (161)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhH
Confidence 37899999999999988888888888888888887655 2222 122222222 288999999999997654333
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHH
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
........++ ..+++++||++|.|++++++.|.
T Consensus 128 ~~~~~~~~~~--~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 128 HVAFLFAKLN--GEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHHHHHhhcc--CCceEEeecCCCCCHHHHHHHhh
Confidence 2233333333 24689999999999999998863
No 269
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.02 E-value=1.7e-09 Score=105.48 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=85.9
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH---hcCCcEEeeeecCCCCCCCHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF---ESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~---~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
+++.+.+++|||||+.+|...+...+..+|++++|+|.++..+.++...|.... ..++|+++++||+|+........
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~ 133 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKAR 133 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHH
Confidence 567799999999999999888888888999999999999988877766553321 24789999999999864322111
Q ss_pred HHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 94 KAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 94 ~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..++.+..+ ..++++||++|.|+++.+.+|++.+.
T Consensus 134 ~~~~~~~~~---~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 134 QITFHRKKN---LQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred HHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 122333333 36799999999999999999987664
No 270
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.01 E-value=6.8e-10 Score=105.90 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=81.5
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHh--cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFE--SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~lpiIvviNKiDl~~~~~- 90 (547)
.++....+++|||||+.+|.......++.+|++++++|.++..+.+... .| ..... .++|+++|+||+|+.....
T Consensus 44 ~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~ 123 (187)
T cd04129 44 VDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVA 123 (187)
T ss_pred ECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccc
Confidence 3556678899999999888765556778999999999998766665543 33 33322 3689999999999854211
Q ss_pred -----------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 -----------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 -----------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....++.+.++. .+++++||++|.|++++|+.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 124 KEEYRTQRFVPIQQGKRVAKEIGA--KKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ccccccCCcCCHHHHHHHHHHhCC--cEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1112333444432 3689999999999999999998755
No 271
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.00 E-value=2.8e-09 Score=95.06 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=86.4
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchh--h---HHHHHHHHhcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQ--T---VANFYLAFESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~q--t---~~~~~~~~~~~lpiIvviNKiDl~~~~ 89 (547)
.+....+.+.+||.||+..|...|.++.+.+++++++|||.+...-. - ...+....-.++|+++..||+|++++-
T Consensus 59 k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 59 KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 44667889999999999999999999999999999999998843211 1 122222333589999999999999874
Q ss_pred HHHHHHHHHHhcCCCC-----ccceeccccccccccccHHHHHhhCC
Q 008991 90 PDRVKAQLKSMFDLDP-----SEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~-----~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
-. .++.+.+|+.. .-++.+|++...|++.++++|+++..
T Consensus 139 ~~---~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 139 SK---IALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cH---HHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 32 23334455432 23688999999999999999998753
No 272
>PRK11058 GTPase HflX; Provisional
Probab=98.97 E-value=2e-09 Score=115.55 Aligned_cols=120 Identities=22% Similarity=0.142 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCC------CceEEEEEeCCCccc---------hHHHHHHHHhhcCEEEEEEECCCCCchhhHH----HHH
Q 008991 7 LNGPGTSEAHNP------SSFLLNLIDTPGHVD---------FSYEVSRSLAACQGALLVVDAAQGVQAQTVA----NFY 67 (547)
Q Consensus 7 s~~pG~T~~~~~------~~~~l~liDTPGh~d---------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~----~~~ 67 (547)
++.||+|++... ....+.||||||..+ |.. +...+..||++++|+|+++....+... ++.
T Consensus 225 ~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~ 303 (426)
T PRK11058 225 ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLE 303 (426)
T ss_pred ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHH
Confidence 467888776532 223678999999843 322 334567899999999999875544432 233
Q ss_pred HHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 68 LAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 68 ~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+...++|+++|+||+|+....... .+. . ..+.+ .++++||++|.|+++|+++|.+.++.
T Consensus 304 el~~~~~pvIiV~NKiDL~~~~~~~-~~~-~-~~~~~--~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 304 EIDAHEIPTLLVMNKIDMLDDFEPR-IDR-D-EENKP--IRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred HhccCCCCEEEEEEcccCCCchhHH-HHH-H-hcCCC--ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 3333479999999999996432111 111 1 12221 24789999999999999999998754
No 273
>PRK09866 hypothetical protein; Provisional
Probab=98.97 E-value=2.5e-09 Score=116.78 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=85.2
Q ss_pred ceEEEEEeCCCccc-----hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC--CcEEeeeecCCCCCCC---
Q 008991 20 SFLLNLIDTPGHVD-----FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE--LTIIPVINKIDQPTAD--- 89 (547)
Q Consensus 20 ~~~l~liDTPGh~d-----f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~--lpiIvviNKiDl~~~~--- 89 (547)
..++.|+||||... +...+...+..+|.+++|+|+..+...............+ .|+++|+||+|+.+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 46789999999853 4556778999999999999999887777777777777766 5999999999985321
Q ss_pred HHHHHHHHHHh---cCCCCccceeccccccccccccHHHHHhh
Q 008991 90 PDRVKAQLKSM---FDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 90 ~~~~~~~i~~~---l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+.+.+.+... ...+...++++||++|.|+++|++.|..+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33333433322 23455689999999999999999999874
No 274
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.93 E-value=4.6e-09 Score=86.93 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=70.5
Q ss_pred ceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccc--ccc
Q 008991 140 SLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRS--TKE 217 (547)
Q Consensus 140 p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~--~~~ 217 (547)
||++.|.++|..+ .|++..++|.+|++++||++.++|++...+|+++...+ .+++++.|||.+.+. +++ ..+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~---~~~~~a~aGd~v~~~--l~~~~~~~ 74 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDD---EEVDYAVAGENVRLK--LKGIDEED 74 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECC---eECCEECCCCEEEEE--ECCCCHHH
Confidence 6899999999888 99999999999999999999999999999999987654 678999999988774 343 357
Q ss_pred ccccCcccC
Q 008991 218 ARIGDTLYH 226 (547)
Q Consensus 218 ~~~Gdtl~~ 226 (547)
++.||+|++
T Consensus 75 v~~G~vl~~ 83 (83)
T cd03698 75 ISPGDVLCS 83 (83)
T ss_pred CCCCCEEeC
Confidence 899999874
No 275
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.93 E-value=6.7e-09 Score=87.56 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=74.9
Q ss_pred cCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccc--c
Q 008991 138 NSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRS--T 215 (547)
Q Consensus 138 ~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~--~ 215 (547)
+.||++.|.++|..++.|++..++|.+|+++.||++.++|.+...+|++|...+ .+++++.|||.+.+. +++ .
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~---~~~~~a~aG~~v~i~--l~~i~~ 76 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHH---EPLEEALPGDNVGFN--VKNVSK 76 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECC---cCcCEECCCCEEEEE--ECCCCH
Confidence 579999999999988899999999999999999999999999999999987653 567899999988875 344 4
Q ss_pred ccccccCcccCCC
Q 008991 216 KEARIGDTLYHNK 228 (547)
Q Consensus 216 ~~~~~Gdtl~~~~ 228 (547)
.+++.||.|++.+
T Consensus 77 ~~v~~G~vl~~~~ 89 (91)
T cd03693 77 KDIKRGDVAGDSK 89 (91)
T ss_pred HHcCCcCEEccCC
Confidence 6789999998764
No 276
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.91 E-value=7e-09 Score=95.32 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=85.5
Q ss_pred CCCCCeEEEeCC--CceEEEEEeCCCccc----------hHHHHHHHHh---hcCEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 7 LNGPGTSEAHNP--SSFLLNLIDTPGHVD----------FSYEVSRSLA---ACQGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~~~~--~~~~l~liDTPGh~d----------f~~~~~~~l~---~aD~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
++++|+|..... .+..+.+|||||+.+ +...+..++. .++++++++|+....+......+..+..
T Consensus 29 ~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~ 108 (170)
T cd01876 29 SKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE 108 (170)
T ss_pred cCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH
Confidence 456676665421 122788999999754 3333334444 4578999999988776666667777777
Q ss_pred cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcC--CCCccceeccccccccccccHHHHHhhC
Q 008991 72 SELTIIPVINKIDQPTAD-PDRVKAQLKSMFD--LDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~--~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+.|+++++||+|+.... .......+...+. ....+++++||+++.|+.++++.|.+++
T Consensus 109 ~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 109 LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 889999999999985432 2223333333332 3345789999999999999999997653
No 277
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.91 E-value=6.9e-09 Score=99.98 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=90.5
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-----hcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~lpiIvviNKiDl~~~~ 89 (547)
.++++.+.+.|+||+|+.+|..+...++..+|+.++|++.++..+++....+.... ...+|+++|+||+|+...+
T Consensus 45 ~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R 124 (196)
T KOG0395|consen 45 TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER 124 (196)
T ss_pred EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc
Confidence 34788899999999999999999999999999999999999988888755553332 1358999999999997643
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
. .+--+.+...++. +++++||+.+.+|+++|..|+..+-.
T Consensus 125 ~V~~eeg~~la~~~~~---~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 125 QVSEEEGKALARSWGC---AFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ccCHHHHHHHHHhcCC---cEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 2 2222344443433 58999999999999999999986644
No 278
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=5.1e-09 Score=92.58 Aligned_cols=108 Identities=22% Similarity=0.220 Sum_probs=80.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHhc---CCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFES---ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~---~lpiIvviNKiDl~~~~~ 90 (547)
++.|+.+++++|||+|++.|......+++.+-++++|.|.+.......+..|.. ++.. +..++++.||.|+...+.
T Consensus 54 evsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 54 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred EecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 457889999999999999999999999999999999999988766666555533 3333 233888999999975432
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHH
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPA 125 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~ 125 (547)
-+...++.+.-|+ -++++||++|.||++.|-.
T Consensus 134 v~yeeak~faeengl---~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 134 VTYEEAKEFAEENGL---MFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred CcHHHHHHHHhhcCe---EEEEecccccCcHHHHHHH
Confidence 1222344443343 5799999999999875533
No 279
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.89 E-value=9.3e-09 Score=87.21 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=63.6
Q ss_pred eeEEEEeeeccccc-cEEEEEEEecCccccCCEEEEecCC---------CeeEEEEEEeecC-CcccccccccCcEEEEE
Q 008991 141 LRMLLLDSYYDEYK-GVICHVAVVDGTLRKGDKISSAATG---------QAYEIVDVGIMHP-ELTPTGVLLTGQVGYVV 209 (547)
Q Consensus 141 ~~~~v~~~~~d~~~-G~v~~~rV~~G~lk~gd~v~~~~~~---------~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~ 209 (547)
+.++||++.+||+. |.++++||++|+|++||.|++...+ ...++.+|..+.+ +..+++++.||||+.+.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 36789999999998 7799999999999999999875322 3468889988887 57889999999999886
Q ss_pred ecccccccccccCc
Q 008991 210 TGMRSTKEARIGDT 223 (547)
Q Consensus 210 ~glk~~~~~~~Gdt 223 (547)
|+ ++...+.+
T Consensus 81 -gl---~~~~~~~~ 90 (94)
T cd04090 81 -GI---DSSIVKTA 90 (94)
T ss_pred -Cc---chheeceE
Confidence 65 44444443
No 280
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.87 E-value=1.6e-08 Score=92.04 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=86.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHH----HHHhcCCcEEeeeecCCCCCCC-H
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFY----LAFESELTIIPVINKIDQPTAD-P 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~----~~~~~~lpiIvviNKiDl~~~~-~ 90 (547)
..+.+++++||..|+..+..-|..++..+|+.|+|||+++....|. ...+. .-+-.|.|++++.||.|++++- .
T Consensus 56 ~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~ 135 (185)
T KOG0073|consen 56 EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL 135 (185)
T ss_pred EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH
Confidence 3467999999999999999999999999999999999987654433 22222 2233578999999999998652 2
Q ss_pred HHHH--HHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVK--AQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~--~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+.+. -++++.+.....+++.|||.+|+++.+-++++++.+.
T Consensus 136 ~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 136 EEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred HHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence 2222 2334444444568999999999999888888887653
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.87 E-value=2.5e-08 Score=98.31 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=76.4
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCCCC--CHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQPTA--DPDRVK 94 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~~~--~~~~~~ 94 (547)
..+.+++++||||+. ..+...+..+|.+++|+|++.+...++...+..+...++|. ++|+||+|+.+. +.+...
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~ 156 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTK 156 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHH
Confidence 356788999999975 56667788999999999999999999999999888889995 459999999643 234455
Q ss_pred HHHHHhcC---CCCccceecccccccc
Q 008991 95 AQLKSMFD---LDPSEALLTSAKTGQG 118 (547)
Q Consensus 95 ~~i~~~l~---~~~~~vi~~SAk~g~G 118 (547)
+++++.+. +...+++++||++..-
T Consensus 157 ~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 157 KRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 56655332 3456899999998743
No 282
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=8.6e-09 Score=95.94 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=92.0
Q ss_pred CCCCCeEEEe-CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh--HHHHHHHHh---cCCcEEeee
Q 008991 7 LNGPGTSEAH-NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT--VANFYLAFE---SELTIIPVI 80 (547)
Q Consensus 7 s~~pG~T~~~-~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt--~~~~~~~~~---~~lpiIvvi 80 (547)
++|.|+..+. ..+++.+++||.-|+..+...+..++...+++|+|||+++...... .+....... .+.|++++.
T Consensus 46 vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~a 125 (181)
T KOG0070|consen 46 VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFA 125 (181)
T ss_pred CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEe
Confidence 5677877763 5578999999999999999999999999999999999998542221 222222222 378999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCC-----CCccceeccccccccccccHHHHHhhCCC
Q 008991 81 NKIDQPTADPDRVKAQLKSMFDL-----DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 81 NKiDl~~~~~~~~~~~i~~~l~~-----~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
||.|++++-. ..++.+.+++ .+..+..++|.+|+|+.+-++++.+.+..
T Consensus 126 NKqD~~~als---~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 126 NKQDLPGALS---AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred chhhccccCC---HHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 9999998743 2233333332 23457899999999999999999887643
No 283
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.85 E-value=1e-08 Score=99.45 Aligned_cols=73 Identities=25% Similarity=0.346 Sum_probs=55.9
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhc-CEEEEEEECCCCC-ch-hhHHHHHHH----H--hcCCcEEeeeecCCCCCC
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAAC-QGALLVVDAAQGV-QA-QTVANFYLA----F--ESELTIIPVINKIDQPTA 88 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~a-D~ailVvDa~~g~-~~-qt~~~~~~~----~--~~~lpiIvviNKiDl~~~ 88 (547)
+.+..+.+||||||.+|...+..+++.+ +++|+|+|+++.. .. .+.+.+... . ..++|+++++||+|+..+
T Consensus 45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 3467899999999999999999999998 9999999998863 22 223333221 1 148999999999999766
Q ss_pred CH
Q 008991 89 DP 90 (547)
Q Consensus 89 ~~ 90 (547)
.+
T Consensus 125 ~~ 126 (203)
T cd04105 125 KP 126 (203)
T ss_pred CC
Confidence 43
No 284
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.2e-08 Score=111.90 Aligned_cols=122 Identities=22% Similarity=0.271 Sum_probs=90.4
Q ss_pred CCCCCeEEEeCC-----CceEEEEEeCCCccchHH-----H-HHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHNP-----SSFLLNLIDTPGHVDFSY-----E-VSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~~-----~~~~l~liDTPGh~df~~-----~-~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
.|+||+|++... +++.++++|.||.-++.. . ..+.+. ..|.++-|+||++ -..+.....++.+.|
T Consensus 31 gNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g 108 (653)
T COG0370 31 GNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELG 108 (653)
T ss_pred cCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcC
Confidence 699999999843 556789999999855432 2 223333 4799999999986 233344445667889
Q ss_pred CcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 74 LTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 74 lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
+|+++++|++|..... .+--.+.+++.+|. |++++||++|.|++++++++.+..+..
T Consensus 109 ~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv---PVv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 109 IPMILALNMIDEAKKRGIRIDIEKLSKLLGV---PVVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred CCeEEEeccHhhHHhcCCcccHHHHHHHhCC---CEEEEEeecCCCHHHHHHHHHHhcccc
Confidence 9999999999974321 11124677888886 889999999999999999998876554
No 285
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.77 E-value=1.3e-08 Score=92.25 Aligned_cols=98 Identities=32% Similarity=0.338 Sum_probs=73.2
Q ss_pred EEEeCCCc----cchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC--CCCHHHHHHHH
Q 008991 24 NLIDTPGH----VDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP--TADPDRVKAQL 97 (547)
Q Consensus 24 ~liDTPGh----~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~--~~~~~~~~~~i 97 (547)
++|||||- ..|..........||.+++|.||++..+.-. -..+...+.|+|=|+||+|++ +++.+...+.+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L 115 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLPSDDANIERAKKWL 115 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCccchhhHHHHHHHH
Confidence 68999994 4566666667778999999999997533211 123445678999999999998 55666555554
Q ss_pred HHhcCCCCccceeccccccccccccHHHHH
Q 008991 98 KSMFDLDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 98 ~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
+. .|.. +++.+|+.+|+|+++|.+.|-
T Consensus 116 ~~-aG~~--~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 116 KN-AGVK--EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HH-cCCC--CeEEEECCCCcCHHHHHHHHh
Confidence 43 4654 579999999999999998874
No 286
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.3e-08 Score=87.66 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHH----HhcCCcEEeeeecCCCCCCCHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLA----FESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~----~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
.++.+||.||..|+......|++++....++|+|+|+.+...... +.-+.-+ ...++++++..||-|++.+...
T Consensus 58 ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p- 136 (180)
T KOG0071|consen 58 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP- 136 (180)
T ss_pred eeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH-
Confidence 467899999999999999999999999999999999877532221 1112111 2236889999999999988542
Q ss_pred HHHHHHHhcCCC-----CccceeccccccccccccHHHHHhhCCC
Q 008991 93 VKAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 93 ~~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+++.+.+++. +.-+.++||.+|.|+.+-|.+|.+.+..
T Consensus 137 --qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 137 --QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred --HHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhccC
Confidence 4555555543 2347899999999999999999887643
No 287
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=2.7e-08 Score=91.98 Aligned_cols=95 Identities=18% Similarity=0.066 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccc
Q 008991 35 SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAK 114 (547)
Q Consensus 35 ~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk 114 (547)
...+.+.++.||.+++|+|++++...+.......+...+.|+++|+||+|+...........+.+.. ..+++++||+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~iSa~ 79 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESE---GIPVVYVSAK 79 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhC---CCcEEEEEcc
Confidence 3456677778999999999988776666665555566789999999999985421111111222222 2468999999
Q ss_pred ccccccccHHHHHhhCCC
Q 008991 115 TGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 115 ~g~Gv~~Ll~~l~~~ip~ 132 (547)
+|.|+++|++.+.+.+|.
T Consensus 80 ~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 80 ERLGTKILRRTIKELAKI 97 (156)
T ss_pred ccccHHHHHHHHHHHHhh
Confidence 999999999999998874
No 288
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.74 E-value=5.3e-08 Score=94.35 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=70.4
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh----------------------cCC
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE----------------------SEL 74 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----------------------~~l 74 (547)
++.+.++||||+|+.+|.......++.+|++|+|+|.++..+.+....|.. ... .++
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 467899999999999999999999999999999999999888877766632 222 368
Q ss_pred cEEeeeecCCCCCCCH------HHHHHHHHHhcCCCCccceecccccc
Q 008991 75 TIIPVINKIDQPTADP------DRVKAQLKSMFDLDPSEALLTSAKTG 116 (547)
Q Consensus 75 piIvviNKiDl~~~~~------~~~~~~i~~~l~~~~~~vi~~SAk~g 116 (547)
|+++|.||+|+...+. ......+.+.++.+ .+..++.+.
T Consensus 131 PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~---~i~~~c~~~ 175 (202)
T cd04102 131 PLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAE---EINLNCTNG 175 (202)
T ss_pred eEEEEEECccchhhcccchHHHhhHhhhHHHhcCCc---eEEEecCCc
Confidence 9999999999965321 11123445556553 355555544
No 289
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.74 E-value=5.4e-08 Score=80.36 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=67.9
Q ss_pred ceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccc--cccc
Q 008991 140 SLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMR--STKE 217 (547)
Q Consensus 140 p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk--~~~~ 217 (547)
||++.|.++|.. .|++..++|.+|++++||++.+.|++...+|+++...+ .+++++.|||.+.+. ++ +..+
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~---~~~~~a~aGd~v~l~--l~~i~~~~ 73 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNED---VEVRYARPGENVRLR--LKGIEEED 73 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECC---EECCEECCCCEEEEE--ecCCCHHH
Confidence 689999999864 38999999999999999999999999999999887643 678999999988875 34 4567
Q ss_pred ccccCcccC
Q 008991 218 ARIGDTLYH 226 (547)
Q Consensus 218 ~~~Gdtl~~ 226 (547)
++.||.|++
T Consensus 74 v~~G~vl~~ 82 (82)
T cd04089 74 ISPGFVLCS 82 (82)
T ss_pred CCCCCEEeC
Confidence 889998863
No 290
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.71 E-value=7e-08 Score=96.25 Aligned_cols=126 Identities=22% Similarity=0.302 Sum_probs=87.0
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc------------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD------------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA 69 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d------------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~ 69 (547)
|..+.|||.. ....+++.|.||||... +......++..||.+++|+|+++.-..-.-..+..+
T Consensus 101 S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l 180 (379)
T KOG1423|consen 101 SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHML 180 (379)
T ss_pred cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHH
Confidence 5677888864 34678999999999743 334566888999999999999863222223344444
Q ss_pred Hh-cCCcEEeeeecCCCCCCCH--------------HHHHHHHHHhcCCCC--------------ccceecccccccccc
Q 008991 70 FE-SELTIIPVINKIDQPTADP--------------DRVKAQLKSMFDLDP--------------SEALLTSAKTGQGLE 120 (547)
Q Consensus 70 ~~-~~lpiIvviNKiDl~~~~~--------------~~~~~~i~~~l~~~~--------------~~vi~~SAk~g~Gv~ 120 (547)
.+ .++|-|+|+||+|...... ....-++++.+...+ ..+|++||++|+||+
T Consensus 181 ~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gik 260 (379)
T KOG1423|consen 181 EEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIK 260 (379)
T ss_pred HHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHH
Confidence 33 4799999999999754311 111223333332211 248999999999999
Q ss_pred ccHHHHHhhCCC
Q 008991 121 HVLPAVIERIPP 132 (547)
Q Consensus 121 ~Ll~~l~~~ip~ 132 (547)
++-++|....|+
T Consensus 261 dlkqyLmsqa~~ 272 (379)
T KOG1423|consen 261 DLKQYLMSQAPP 272 (379)
T ss_pred HHHHHHHhcCCC
Confidence 999999998875
No 291
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.71 E-value=8e-08 Score=79.16 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=68.7
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARI 220 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~ 220 (547)
|++.|.|.|.....|..+.++|.+|++++||++.++|.+...+|+++...+ .+++++.|||.+.+. +++..++++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~---~~~~~a~aGd~v~l~--l~~~~~i~~ 75 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFD---GELDEAGAGESVTLT--LEDEIDVSR 75 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECC---cEeCEEcCCCEEEEE--ECCccccCC
Confidence 578899998776677789999999999999999999999999999987653 578899999988874 456778999
Q ss_pred cCccc
Q 008991 221 GDTLY 225 (547)
Q Consensus 221 Gdtl~ 225 (547)
||.|+
T Consensus 76 G~vl~ 80 (81)
T cd03695 76 GDVIV 80 (81)
T ss_pred CCEEe
Confidence 99886
No 292
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3.3e-08 Score=90.86 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=86.3
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-----HHHHHHHHhcCCcEEeeeecCCCCCCCHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-----VANFYLAFESELTIIPVINKIDQPTADPDRVK 94 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-----~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~ 94 (547)
.-.++|||.-|+......|..++..|+++|++|||++....+. .+....-...++|+++.+||-|+.++-. .
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~---~ 144 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME---A 144 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh---H
Confidence 4578899999999999999999999999999999998533222 3344444556999999999999987532 2
Q ss_pred HHHHHh------cCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 95 AQLKSM------FDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 95 ~~i~~~------l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
+++... .+-...++.++||.+|+||++-.++++..++..
T Consensus 145 ~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 145 AELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 233333 333445799999999999999999999988654
No 293
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.68 E-value=1.2e-07 Score=76.47 Aligned_cols=80 Identities=26% Similarity=0.422 Sum_probs=66.4
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEec--CCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAA--TGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEA 218 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~--~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~ 218 (547)
+++.|++++++++.|.++++||++|+|++||.+.+.+ .....++..+...+ .+.+++.|||++.+... ...++
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~---~~~~~~~aG~~~~~~~~--~~~~~ 75 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK---GEVDEAVAGDIVGIVLK--DKDDI 75 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC---ceeceecCCCEEEEEEc--ccccc
Confidence 4678999999999999999999999999999999998 66667788776554 56789999999998743 22368
Q ss_pred cccCccc
Q 008991 219 RIGDTLY 225 (547)
Q Consensus 219 ~~Gdtl~ 225 (547)
++||+++
T Consensus 76 ~~g~~l~ 82 (83)
T cd01342 76 KIGDTLT 82 (83)
T ss_pred CCCCEec
Confidence 9999875
No 294
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.4e-08 Score=85.49 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=89.3
Q ss_pred CCCCeEEEe-CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh--HHHHHHHHh---cCCcEEeeee
Q 008991 8 NGPGTSEAH-NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT--VANFYLAFE---SELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~~-~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt--~~~~~~~~~---~~lpiIvviN 81 (547)
++||++.+. ..++.++++||.-|+.....-|..+++..|.+|+|||+++..+... .+....+.+ .+..++++.|
T Consensus 48 Ptigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~an 127 (182)
T KOG0072|consen 48 PTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFAN 127 (182)
T ss_pred CCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEec
Confidence 466766653 4578899999999999999999999999999999999987543332 333333322 3566889999
Q ss_pred cCCCCCCCHHHHHHHHHHhcCCC-----CccceeccccccccccccHHHHHhhCC
Q 008991 82 KIDQPTADPDRVKAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+|.+.+-. ..+....+++. ...++..||.+|+|+++.+|++.+-+.
T Consensus 128 KqD~~~~~t---~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 128 KQDYSGALT---RSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred cccchhhhh---HHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 999876532 22333333332 246899999999999999999987654
No 295
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.66 E-value=1.4e-07 Score=93.50 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=74.8
Q ss_pred CCCCeEEEeC-----CCceEEEEEeCCCccch-------HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-------
Q 008991 8 NGPGTSEAHN-----PSSFLLNLIDTPGHVDF-------SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL------- 68 (547)
Q Consensus 8 ~~pG~T~~~~-----~~~~~l~liDTPGh~df-------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~------- 68 (547)
++|++|.+.. ..+..+++|||||+.+. ...+...++.+|++++|+|+++... +-......
T Consensus 29 ~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~ 107 (233)
T cd01896 29 AYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIR 107 (233)
T ss_pred CCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCce
Confidence 4566665431 24578999999998543 3355677889999999999976432 11111111
Q ss_pred -------------------------------------HHh---------------------------cCCcEEeeeecCC
Q 008991 69 -------------------------------------AFE---------------------------SELTIIPVINKID 84 (547)
Q Consensus 69 -------------------------------------~~~---------------------------~~lpiIvviNKiD 84 (547)
+.+ ..+|+++|+||+|
T Consensus 108 l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~D 187 (233)
T cd01896 108 LNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKID 187 (233)
T ss_pred ecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECcc
Confidence 111 1258999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 85 QPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 85 l~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+... ++. +.+.+ ..+++++||++|.|++++++.+.+.+
T Consensus 188 l~~~--~~~-~~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 188 LISI--EEL-DLLAR-----QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCH--HHH-HHHhc-----CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 8642 221 22221 12578999999999999999998765
No 296
>PRK13768 GTPase; Provisional
Probab=98.65 E-value=1e-07 Score=95.65 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=75.2
Q ss_pred EEEEEeCCCccchH---HHH---HHHHhh--cCEEEEEEECCCCCchhhHHHHHHH-----HhcCCcEEeeeecCCCCCC
Q 008991 22 LLNLIDTPGHVDFS---YEV---SRSLAA--CQGALLVVDAAQGVQAQTVANFYLA-----FESELTIIPVINKIDQPTA 88 (547)
Q Consensus 22 ~l~liDTPGh~df~---~~~---~~~l~~--aD~ailVvDa~~g~~~qt~~~~~~~-----~~~~lpiIvviNKiDl~~~ 88 (547)
.+.+|||||+.++. ... .+.+.. ++++++|+|++.+....+....... ...++|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 57899999987742 222 233333 8999999999887766663332222 2568999999999998754
Q ss_pred CH-HHHHHHHHH---------------------------hcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 89 DP-DRVKAQLKS---------------------------MFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 89 ~~-~~~~~~i~~---------------------------~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+. +...+.+.. .++ ...+++++||+++.|++++++.|.+.++.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG-LPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC-CCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 32 222221111 112 12478999999999999999999999865
No 297
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.63 E-value=1.8e-07 Score=77.35 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=68.2
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccc--ccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRST--KEA 218 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~--~~~ 218 (547)
|++.|.++|..++.|.+..++|.+|++++||++.+.|.+...+|+++... ..+++++.|||.+.+. +++. .++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~---~~~~~~a~aGd~v~i~--l~~~~~~~i 75 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH---GKDVEEAKAGDRVALN--LTGVDAKDL 75 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC---CcCcCEEcCCCEEEEE--EcCCCHHHc
Confidence 57889999988899999999999999999999999999988888888754 3678899999987775 3333 678
Q ss_pred cccCcccC
Q 008991 219 RIGDTLYH 226 (547)
Q Consensus 219 ~~Gdtl~~ 226 (547)
+.||.+++
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03696 76 ERGDVLSS 83 (83)
T ss_pred CCccEEcC
Confidence 89998763
No 298
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.58 E-value=1.1e-07 Score=90.59 Aligned_cols=117 Identities=21% Similarity=0.175 Sum_probs=85.5
Q ss_pred EEEe-CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh--HHHHHHHHh--cCCcEEeeeecCCCCC
Q 008991 13 SEAH-NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT--VANFYLAFE--SELTIIPVINKIDQPT 87 (547)
Q Consensus 13 T~~~-~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt--~~~~~~~~~--~~lpiIvviNKiDl~~ 87 (547)
...+ +|+.+.+.||||+|++||...+.-++..+|.++++++..+..+.+. ..++-.... .++|+|+|++|.||..
T Consensus 44 ~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 44 NVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD 123 (198)
T ss_pred EEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh
Confidence 3455 4899999999999999998866668889999999999888777665 233333333 3799999999999962
Q ss_pred CCHHHHHHHH----------------HHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 88 ADPDRVKAQL----------------KSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 88 ~~~~~~~~~i----------------~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
+. ...+.+ .+.+| ...+++|||++..|+.++|+..+...-.|
T Consensus 124 -d~-~~~~~l~~~~~~~Vt~~~g~~lA~~ig--a~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 124 -DP-STLEKLQRQGLEPVTYEQGLELAKEIG--AVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred -CH-HHHHHHHhccCCcccHHHHHHHHHHhC--cceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 22 122222 22222 24589999999999999999888765433
No 299
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.57 E-value=2.9e-07 Score=89.56 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=85.9
Q ss_pred CCCeEEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCC-CCchhhHHHHH-HHHhc---CCcEEeeeecC
Q 008991 9 GPGTSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQ-GVQAQTVANFY-LAFES---ELTIIPVINKI 83 (547)
Q Consensus 9 ~pG~T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~-~~~~~---~lpiIvviNKi 83 (547)
+|+.++...+..+++.+|||+|+.+|...+..+...++++++++|.+. ....+..+.|. .+... +.|++++.||+
T Consensus 42 ~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (219)
T COG1100 42 DPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121 (219)
T ss_pred eEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 344455555557889999999999999999999999999999999987 33344455554 33332 58999999999
Q ss_pred CCCCCCHHH--HHHH---------HHH---hc-CCCCccceecccc--ccccccccHHHHHhhCC
Q 008991 84 DQPTADPDR--VKAQ---------LKS---MF-DLDPSEALLTSAK--TGQGLEHVLPAVIERIP 131 (547)
Q Consensus 84 Dl~~~~~~~--~~~~---------i~~---~l-~~~~~~vi~~SAk--~g~Gv~~Ll~~l~~~ip 131 (547)
|+....... ..+. ... .. .... .++.+||+ ++.|+.+++..+...+.
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 997654211 0000 000 00 1122 27899999 99999999998888764
No 300
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.57 E-value=1.5e-07 Score=90.07 Aligned_cols=101 Identities=23% Similarity=0.132 Sum_probs=71.0
Q ss_pred CCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCH-HHHHHHHH-----HhcC
Q 008991 29 PGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADP-DRVKAQLK-----SMFD 102 (547)
Q Consensus 29 PGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~-~~~~~~i~-----~~l~ 102 (547)
|.+..|...+..++..+|++++|+|+++.........+ ....+.|+++|+||+|+..... ....+.+. +..+
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 44555788888999999999999999875433333322 2235789999999999864322 12122222 2233
Q ss_pred CCCccceeccccccccccccHHHHHhhCC
Q 008991 103 LDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 103 ~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
....+++++||++|.|+++|++.|.+.+|
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 33346899999999999999999999886
No 301
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.54 E-value=4.5e-07 Score=75.71 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=67.0
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecC--CCeeEEEEEEeecCCcccccccccCcEEEEEecccc--cc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAAT--GQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRS--TK 216 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~--~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~--~~ 216 (547)
|++.|.++|.-++.|++..++|.+|++++||++.+.+. +...+|++|... ..+++++.|||.+.+. +++ ..
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~---~~~~~~a~~G~~v~l~--l~~~~~~ 75 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF---RKTLDEAEAGDNVGVL--LRGVKRE 75 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC---CcCCCEECCCCEEEEE--ECCCCHH
Confidence 57788888888889999999999999999999999876 556778887654 3578899999988875 343 36
Q ss_pred cccccCcccCC
Q 008991 217 EARIGDTLYHN 227 (547)
Q Consensus 217 ~~~~Gdtl~~~ 227 (547)
++..||.|+++
T Consensus 76 ~v~rG~vl~~~ 86 (87)
T cd03697 76 DVERGMVLAKP 86 (87)
T ss_pred HcCCccEEecC
Confidence 78899998864
No 302
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.53 E-value=4.5e-07 Score=75.73 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=66.1
Q ss_pred eeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCC----CeeEEEEEEeecCCcccccccccCcEEEEEe-ccccc
Q 008991 141 LRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATG----QAYEIVDVGIMHPELTPTGVLLTGQVGYVVT-GMRST 215 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~----~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~-glk~~ 215 (547)
|++.|.++|..++.|++..++|.+|++++||++.++|.+ ...+|++|... ..+++++.|||.+.+.. ++ +.
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~---~~~~~~a~aGd~v~l~l~~i-~~ 76 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN---RSPVRVVRAGQSASLALKKI-DR 76 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC---CeECCEECCCCEEEEEEcCC-CH
Confidence 467888888888999999999999999999999999984 45677777653 46788999999888753 32 35
Q ss_pred ccccccCcccC
Q 008991 216 KEARIGDTLYH 226 (547)
Q Consensus 216 ~~~~~Gdtl~~ 226 (547)
.+++.|+.|++
T Consensus 77 ~~i~~G~vl~~ 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHcCCccEEeC
Confidence 77888988763
No 303
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.49 E-value=3e-07 Score=74.05 Aligned_cols=67 Identities=27% Similarity=0.357 Sum_probs=51.7
Q ss_pred cEEEEEEEecCccccCCEEEEec--CCCe---eEEEEEEeecC-CcccccccccCcEEEEEeccccccc-ccccCccc
Q 008991 155 GVICHVAVVDGTLRKGDKISSAA--TGQA---YEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKE-ARIGDTLY 225 (547)
Q Consensus 155 G~v~~~rV~~G~lk~gd~v~~~~--~~~~---~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~-~~~Gdtl~ 225 (547)
|+++++||++|+|++||+|.+.+ +++. .+|.++..+++ ...++..+.+|+++. +.+.++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~----~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVA----IIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEE----SSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEE----EcCCCCCcCcCCEEC
Confidence 78999999999999999999955 4455 78888887765 345566666666654 445577 79999986
No 304
>PLN00023 GTP-binding protein; Provisional
Probab=98.48 E-value=4.8e-07 Score=92.92 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHhc---------------CCcEEeeeec
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFES---------------ELTIIPVINK 82 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~~---------------~lpiIvviNK 82 (547)
+.+.++||||+|+..|...+..+++.+|++|+|+|.++..+.+....|.. +... ++|+++|.||
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 46889999999999999999999999999999999998776766655532 3221 4789999999
Q ss_pred CCCCCC
Q 008991 83 IDQPTA 88 (547)
Q Consensus 83 iDl~~~ 88 (547)
+|+...
T Consensus 161 ~DL~~~ 166 (334)
T PLN00023 161 ADIAPK 166 (334)
T ss_pred cccccc
Confidence 999653
No 305
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.43 E-value=4.8e-07 Score=85.15 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=70.7
Q ss_pred CCCcc-chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCc
Q 008991 28 TPGHV-DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPS 106 (547)
Q Consensus 28 TPGh~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~ 106 (547)
=|||- ....++...+..||.+++|+|+.++............ .+.|.++|+||+|+... +.. +++.+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~~-~~~~~~~~~~~~ 76 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KKT-KKWLKYFESKGE 76 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HHH-HHHHHHHHhcCC
Confidence 37774 4667888999999999999999887655444433322 46799999999999642 222 222222221223
Q ss_pred cceeccccccccccccHHHHHhhCC
Q 008991 107 EALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 107 ~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+++.+||+++.|+++|++.+.+.+|
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHH
Confidence 6789999999999999999988875
No 306
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.43 E-value=1.3e-06 Score=87.80 Aligned_cols=105 Identities=28% Similarity=0.418 Sum_probs=75.8
Q ss_pred EEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCC---CchhhHHHH-HHHHh-----cCCcEEeeeecCCC
Q 008991 22 LLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQG---VQAQTVANF-YLAFE-----SELTIIPVINKIDQ 85 (547)
Q Consensus 22 ~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g---~~~qt~~~~-~~~~~-----~~lpiIvviNKiDl 85 (547)
++.+-|.||... ......+.+..|++.++|||.+.+ .-.++...+ ..+.. .+.|.++|+||+|+
T Consensus 245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~ 324 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL 324 (366)
T ss_pred eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence 389999999854 455677888899999999999877 333333322 22221 25789999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 86 PTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
+++. +..++++.+.+.- ..++++||++++|+++|++.|.+.
T Consensus 325 ~eae-~~~l~~L~~~lq~--~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 325 PEAE-KNLLSSLAKRLQN--PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred hhHH-HHHHHHHHHHcCC--CcEEEeeeccccchHHHHHHHhhc
Confidence 7443 3335667666643 248999999999999999988653
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.41 E-value=8.2e-07 Score=82.31 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=63.1
Q ss_pred HHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh--cCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccc
Q 008991 38 VSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--SELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKT 115 (547)
Q Consensus 38 ~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~ 115 (547)
+..++..+|.+++|+|+.++...+.......+.. .+.|+|+|+||+|+... +...+.+.......+..++++||++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVTARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHHHHHHHHHhcCCcEEEEEeeccc
Confidence 4578899999999999998765555555544443 35899999999999532 2222222222121122358899999
Q ss_pred cccccccHHHHHhhC
Q 008991 116 GQGLEHVLPAVIERI 130 (547)
Q Consensus 116 g~Gv~~Ll~~l~~~i 130 (547)
+.|+++|++.+.+..
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999997654
No 308
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.36 E-value=1e-06 Score=84.90 Aligned_cols=111 Identities=11% Similarity=0.167 Sum_probs=76.6
Q ss_pred EEEEEeCCCccchHHHHHH-----HHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC-------
Q 008991 22 LLNLIDTPGHVDFSYEVSR-----SLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD------- 89 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~-----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~------- 89 (547)
.+.+|||||..+....... .+..+|.+++|.| ...+.....++..+...+.|+++|+||+|+...+
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~ 130 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPR 130 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccc
Confidence 6899999998654222222 2456888887754 3455555667777777889999999999984321
Q ss_pred ---HHHHHHHHHHh----c---CCCCccceecccc--ccccccccHHHHHhhCCCCC
Q 008991 90 ---PDRVKAQLKSM----F---DLDPSEALLTSAK--TGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 90 ---~~~~~~~i~~~----l---~~~~~~vi~~SAk--~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
.+..++++.+. + +....+++.+|+. .+.|+..|.+.|...+|...
T Consensus 131 ~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 131 SFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 22334444332 2 2444579999998 68999999999999998643
No 309
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.35 E-value=9.7e-07 Score=89.73 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCcc-chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCcc
Q 008991 29 PGHV-DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSE 107 (547)
Q Consensus 29 PGh~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~ 107 (547)
|||- ....++...+..+|.+++|+||..+............ .+.|+|+|+||+|+... ... +.+.+.+.....+
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~--~~~-~~~~~~~~~~~~~ 79 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP--AVT-KQWLKYFEEKGIK 79 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH--HHH-HHHHHHHHHcCCe
Confidence 8885 4677889999999999999999887665554444433 37899999999999532 211 2222222111236
Q ss_pred ceeccccccccccccHHHHHhhCCC
Q 008991 108 ALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 108 vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
++++||+++.|+++|++.+.+.++.
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHH
Confidence 8999999999999999999888754
No 310
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.34 E-value=1.4e-07 Score=87.03 Aligned_cols=111 Identities=19% Similarity=0.186 Sum_probs=85.9
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH---HhcCCcEEeeeecCCCCCCCH--H
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA---FESELTIIPVINKIDQPTADP--D 91 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~---~~~~lpiIvviNKiDl~~~~~--~ 91 (547)
++++..+.+|||+|+.+|......+++.|.+.+||++.++..++....-|+.- ....+|.++|-||||+.+... .
T Consensus 65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~ 144 (246)
T KOG4252|consen 65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDK 144 (246)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcch
Confidence 34556677999999999999999999999999999999998888776555432 335799999999999965321 2
Q ss_pred HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 92 RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 92 ~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
...+.+...+.. .++-+|++...||..+|..|++.+
T Consensus 145 ~evE~lak~l~~---RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 145 GEVEGLAKKLHK---RLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred HHHHHHHHHhhh---hhhhhhhhhhhhhHHHHHHHHHHH
Confidence 223344444433 568999999999999998888754
No 311
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1e-06 Score=93.20 Aligned_cols=123 Identities=20% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc---------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD---------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d---------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
|+.||||||. +-+++.+.|+||+|..+ =.......+..+|.+++|+||..+...+.....+.+...
T Consensus 297 Spv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~ 376 (531)
T KOG1191|consen 297 SPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETE 376 (531)
T ss_pred CCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHh
Confidence 6899999975 44678899999999976 112344667789999999999777666666555444432
Q ss_pred ------------CCcEEeeeecCCCCCC---CHHHHHHHHHHhcCCCCcc-ceeccccccccccccHHHHHhhC
Q 008991 73 ------------ELTIIPVINKIDQPTA---DPDRVKAQLKSMFDLDPSE-ALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 73 ------------~lpiIvviNKiDl~~~---~~~~~~~~i~~~l~~~~~~-vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.-|+|++.||+|+... ........... .+....+ +.++|+++++|.+.|.+++.+.+
T Consensus 377 ~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 377 GVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 2568899999998543 11101111122 2222234 44599999999999999988755
No 312
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.29 E-value=2e-06 Score=79.56 Aligned_cols=83 Identities=24% Similarity=0.223 Sum_probs=58.3
Q ss_pred CEEEEEEECCCCCchhhHHHH-HHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHH
Q 008991 46 QGALLVVDAAQGVQAQTVANF-YLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLP 124 (547)
Q Consensus 46 D~ailVvDa~~g~~~qt~~~~-~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~ 124 (547)
|.+++|+|+.++...+..... ..+...+.|+|+|+||+|+... +...+.+.........+++++||++|.|+++|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999887666554444 3556678999999999999542 2222222111111234689999999999999999
Q ss_pred HHHhhC
Q 008991 125 AVIERI 130 (547)
Q Consensus 125 ~l~~~i 130 (547)
.+.+..
T Consensus 79 ~i~~~~ 84 (155)
T cd01849 79 AFTKQT 84 (155)
T ss_pred HHHHHh
Confidence 997664
No 313
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.27 E-value=8.9e-07 Score=88.42 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=65.7
Q ss_pred cchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHH-HHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccce
Q 008991 32 VDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANF-YLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEAL 109 (547)
Q Consensus 32 ~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~-~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi 109 (547)
++|.......++.+|++++|+|+++.. +.+....| ..+...++|+++|+||+||..... ..++..+.+.-...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~--~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED--MEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH--HHHHHHHHHHHCCCeEE
Confidence 456666667889999999999998755 55554444 445567899999999999964322 11122222211224789
Q ss_pred eccccccccccccHHHHH
Q 008991 110 LTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 110 ~~SAk~g~Gv~~Ll~~l~ 127 (547)
.+||++|.|++++++.+.
T Consensus 102 ~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEecCCchhHHHHHhhhc
Confidence 999999999999998774
No 314
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.24 E-value=3.8e-06 Score=76.44 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc--CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccc
Q 008991 36 YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES--ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSA 113 (547)
Q Consensus 36 ~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SA 113 (547)
.++.+++..||.+++|+|+.++...+.......+... +.|+++|+||+|+... +. .+++.+.+.....+++++||
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--~~-~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--EQ-RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--HH-HHHHHHHHHhcCCeEEEEEe
Confidence 4677899999999999999998877766666666555 8999999999999532 22 22333333222246899999
Q ss_pred ccccc
Q 008991 114 KTGQG 118 (547)
Q Consensus 114 k~g~G 118 (547)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 99875
No 315
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.24 E-value=8.9e-06 Score=84.18 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=42.4
Q ss_pred CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHH-HHHhhCCC
Q 008991 73 ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLP-AVIERIPP 132 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~-~l~~~ip~ 132 (547)
..|+|+++||+|+... ++..+.+.... ...+++++||+.+.|+.+|.+ .+.+++|.
T Consensus 214 ~KPvI~VlNK~Dl~~~--~~~~~~l~~~~--~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVIAANKADIPDA--ENNISKLRLKY--PDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEEEEEHHHccCh--HHHHHHHHhhC--CCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 3699999999998533 33344444333 235789999999999999998 69999975
No 316
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.20 E-value=2.8e-06 Score=88.19 Aligned_cols=104 Identities=23% Similarity=0.242 Sum_probs=74.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH--HHHHHHhcCCcEEeeeecCCCCCCC-HHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA--NFYLAFESELTIIPVINKIDQPTAD-PDRVKA 95 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~--~~~~~~~~~lpiIvviNKiDl~~~~-~~~~~~ 95 (547)
.++.+.|+||+|...-... ....||.+++|++...|...|... .+..+ -++|+||+|+.+.. .+....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhcccchhHHHHHHH
Confidence 4678899999998732222 467899999998755555444422 22222 38999999987543 345556
Q ss_pred HHHHhcCCCC-------ccceeccccccccccccHHHHHhhCC
Q 008991 96 QLKSMFDLDP-------SEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 96 ~i~~~l~~~~-------~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
++...+.+.. .|++.+||++|.|+++|++.|.++++
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6666665411 47999999999999999999999875
No 317
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.18 E-value=2.2e-06 Score=87.60 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=72.2
Q ss_pred eCCCcc-chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCC
Q 008991 27 DTPGHV-DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDP 105 (547)
Q Consensus 27 DTPGh~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~ 105 (547)
.=|||- .-..++...+..||.+++|+|+..+............ .+.|+++|+||+|+... .. .+.+.+.+.-..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~--~~kp~iiVlNK~DL~~~--~~-~~~~~~~~~~~~ 80 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII--GNKPRLLILNKSDLADP--EV-TKKWIEYFEEQG 80 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh--CCCCEEEEEEchhcCCH--HH-HHHHHHHHHHcC
Confidence 348885 3556788899999999999999887766654443333 27899999999999532 21 222222221112
Q ss_pred ccceeccccccccccccHHHHHhhCCC
Q 008991 106 SEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 106 ~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+++.+||+++.|+++|++.+.+.++.
T Consensus 81 ~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 81 IKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 367999999999999999999887754
No 318
>COG2262 HflX GTPases [General function prediction only]
Probab=98.17 E-value=6e-06 Score=86.07 Aligned_cols=114 Identities=29% Similarity=0.323 Sum_probs=76.2
Q ss_pred eEEEeC-CCceEEEEEeCCCccc---------hHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHHHh---cCCcEE
Q 008991 12 TSEAHN-PSSFLLNLIDTPGHVD---------FSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLAFE---SELTII 77 (547)
Q Consensus 12 ~T~~~~-~~~~~l~liDTPGh~d---------f~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~---~~lpiI 77 (547)
|||... +.+..+-+-||-|..+ |. .+......+|..+.|||+++..-.+. ......+.+ ..+|+|
T Consensus 230 ttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk-sTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i 308 (411)
T COG2262 230 TTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK-STLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPII 308 (411)
T ss_pred ceeEEEeCCCceEEEecCccCcccCChHHHHHHH-HHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEE
Confidence 455443 2357788999999854 32 22233457999999999998732222 222233333 468999
Q ss_pred eeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 78 PVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 78 vviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+|.||+|+..... ....+.... + +.+++||++|.|++.|++.|.+.++.
T Consensus 309 ~v~NKiD~~~~~~--~~~~~~~~~---~-~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 309 LVLNKIDLLEDEE--ILAELERGS---P-NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred EEEecccccCchh--hhhhhhhcC---C-CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 9999999754322 223333322 2 57899999999999999999998864
No 319
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.17 E-value=1.4e-05 Score=81.00 Aligned_cols=124 Identities=22% Similarity=0.247 Sum_probs=74.0
Q ss_pred cCCCCCCeEEEeCC-CceEEEEEeCCCccch--------HHHHHHHHhh-cCEEEEEEECCCC--Cchhh-HHHHHHHH-
Q 008991 5 NELNGPGTSEAHNP-SSFLLNLIDTPGHVDF--------SYEVSRSLAA-CQGALLVVDAAQG--VQAQT-VANFYLAF- 70 (547)
Q Consensus 5 ~~s~~pG~T~~~~~-~~~~l~liDTPGh~df--------~~~~~~~l~~-aD~ailVvDa~~g--~~~qt-~~~~~~~~- 70 (547)
||..|-|+..-+-. +...+++|||||.-|= -.+...+|+. .+.+++++|++.. -+... ...|...+
T Consensus 198 YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~ 277 (346)
T COG1084 198 YPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKE 277 (346)
T ss_pred CCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHH
Confidence 34444444444333 3448999999999661 1223344554 6778889998753 33222 23333333
Q ss_pred hcCCcEEeeeecCCCCCC-CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 71 ESELTIIPVINKIDQPTA-DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~~-~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+.|+++|+||+|.... +.++....+... .......+|+..+.+++.+-+.+.....
T Consensus 278 ~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 278 LFKAPIVVVINKIDIADEEKLEEIEASVLEE---GGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred hcCCCeEEEEecccccchhHHHHHHHHHHhh---ccccccceeeeehhhHHHHHHHHHHHhh
Confidence 346899999999998642 223322222222 2234578899999999888777766533
No 320
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.14 E-value=4.7e-06 Score=78.98 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=46.7
Q ss_pred CceEEEEEeCCCccchHHHHHHH---HhhcCEEEEEEECCCCCc--hhhHHHHHHH---H---hcCCcEEeeeecCCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRS---LAACQGALLVVDAAQGVQ--AQTVANFYLA---F---ESELTIIPVINKIDQPT 87 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~---l~~aD~ailVvDa~~g~~--~qt~~~~~~~---~---~~~lpiIvviNKiDl~~ 87 (547)
..-.+.++|+|||.......... +..+-++|+|||++.-.. .++.+.++.. . ..++|++++.||.|+..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 44578899999999988877665 888999999999974211 1222333221 1 25788999999999988
Q ss_pred CCH
Q 008991 88 ADP 90 (547)
Q Consensus 88 ~~~ 90 (547)
+.+
T Consensus 127 A~~ 129 (181)
T PF09439_consen 127 AKP 129 (181)
T ss_dssp ---
T ss_pred cCC
Confidence 764
No 321
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.12 E-value=7e-06 Score=71.79 Aligned_cols=75 Identities=25% Similarity=0.238 Sum_probs=53.6
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccc---------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVD---------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~d---------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
|+.+++|+... ..+..+.|+||||..+ ......+.+..+|++++|+|+.+....+....+..+. .
T Consensus 28 ~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~ 106 (116)
T PF01926_consen 28 SNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-N 106 (116)
T ss_dssp SSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-T
T ss_pred cccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-c
Confidence 45677766542 2445678999999854 2334556668899999999988744444455656665 8
Q ss_pred CCcEEeeeec
Q 008991 73 ELTIIPVINK 82 (547)
Q Consensus 73 ~lpiIvviNK 82 (547)
+.|+++|+||
T Consensus 107 ~~~~i~v~NK 116 (116)
T PF01926_consen 107 KKPIILVLNK 116 (116)
T ss_dssp TSEEEEEEES
T ss_pred CCCEEEEEcC
Confidence 8999999998
No 322
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.11 E-value=1e-05 Score=72.14 Aligned_cols=110 Identities=19% Similarity=0.126 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-----HHHHHHHHhcCCcEEeeeecCCCCCCCHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-----VANFYLAFESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-----~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
+++++|+||..|+.....-|+.++...|+.|+|+|+++.-.+.. .+.+...+-..+|+.++.||-|+..+-.
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--- 136 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--- 136 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc---
Confidence 45899999999999999999999999999999999887533221 2222333335789999999999865432
Q ss_pred HHHHHHhcCCC-----CccceeccccccccccccHHHHHhhCC
Q 008991 94 KAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 94 ~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+++...+++. ...+-.+||.+++|+..-.+++.....
T Consensus 137 ~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 137 VEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred hHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCCC
Confidence 22333333321 235778999999999999998876543
No 323
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.09 E-value=2.5e-05 Score=64.75 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=60.9
Q ss_pred EEEEeeeccccccEEEEEEEecCccccCCEEEEecCCC---eeEEEEEEeecCCcccccccccCcEEEEEeccccccccc
Q 008991 143 MLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQ---AYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEAR 219 (547)
Q Consensus 143 ~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~---~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~ 219 (547)
+.|.++|.....|+++.+||.+|++++|+.+.+.|.++ .-++.++..+ ...++++.+|+-+.+. +++..+++
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~---~~~v~~a~~G~ecgi~--l~~~~d~~ 77 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF---KDDVKEVKKGYECGIT--LENFNDIK 77 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc---CcccCEECCCCEEEEE--EeCcccCC
Confidence 45666666566789999999999999999999999984 4466666543 4678899999977774 46667999
Q ss_pred ccCcc
Q 008991 220 IGDTL 224 (547)
Q Consensus 220 ~Gdtl 224 (547)
.||+|
T Consensus 78 ~Gdvi 82 (84)
T cd03692 78 VGDII 82 (84)
T ss_pred CCCEE
Confidence 99986
No 324
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=3.2e-06 Score=79.05 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=85.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH---HhcCCcEEeeeecCCCCCCCHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA---FESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~---~~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
+.+.+.++.|||.|++.|......++-.+.+|++++|.+.....+....|..- ...++|++++.||+|.......
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k-- 132 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVK-- 132 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccc--
Confidence 33469999999999999999888888899999999999988888887767432 3457999999999998543211
Q ss_pred HHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 94 KAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 94 ~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..--......+...+++||+++.|.+.-|-++...+
T Consensus 133 -~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 133 -AKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred -cccceeeecccceeEEeecccccccccchHHHhhhh
Confidence 111111122344679999999999999999998766
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.1e-05 Score=84.62 Aligned_cols=87 Identities=23% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHHhhcCEEEEEEECCCCC-chh-hHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccccc
Q 008991 39 SRSLAACQGALLVVDAAQGV-QAQ-TVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTG 116 (547)
Q Consensus 39 ~~~l~~aD~ailVvDa~~g~-~~q-t~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g 116 (547)
..+++.+|.+++|+|+.+.. ... ...++..+...++|+++|+||+|+... +.. +.+.+.+.....+++++||++|
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--~~~-~~~~~~~~~~g~~v~~iSA~tg 160 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP--TEQ-QQWQDRLQQWGYQPLFISVETG 160 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh--HHH-HHHHHHHHhcCCeEEEEEcCCC
Confidence 34688999999999998643 332 244445556679999999999999642 222 2222222111236899999999
Q ss_pred ccccccHHHHHh
Q 008991 117 QGLEHVLPAVIE 128 (547)
Q Consensus 117 ~Gv~~Ll~~l~~ 128 (547)
.|+++|++.+..
T Consensus 161 ~GI~eL~~~L~~ 172 (352)
T PRK12289 161 IGLEALLEQLRN 172 (352)
T ss_pred CCHHHHhhhhcc
Confidence 999999988853
No 326
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=2.4e-05 Score=74.72 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=72.4
Q ss_pred EEEEEeCCCccchHHHHHHHHh---hcCEEEEEEECCCCC-chhh-HHHH-HHH-----HhcCCcEEeeeecCCCCCCCH
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLA---ACQGALLVVDAAQGV-QAQT-VANF-YLA-----FESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~---~aD~ailVvDa~~g~-~~qt-~~~~-~~~-----~~~~lpiIvviNKiDl~~~~~ 90 (547)
..+++|-|||..........+. .+-++++|||+..-. ...+ .+.+ ..+ ..++.|++++.||-|+.-+.+
T Consensus 83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 3789999999999988888888 799999999986532 1222 2222 222 234678999999999987765
Q ss_pred HHHHH-HHHHhcC-----------CC-------------------------CccceeccccccccccccHHHHHhh
Q 008991 91 DRVKA-QLKSMFD-----------LD-------------------------PSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 91 ~~~~~-~i~~~l~-----------~~-------------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+.++ +++..++ .. ...+.++|+++| +++++-++|.+.
T Consensus 163 ~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 163 AEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 44332 2222110 00 113788999998 899888888654
No 327
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.98 E-value=1.2e-05 Score=82.22 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=70.3
Q ss_pred HhhcCEEEEEEECCCCC-chhhHH-HHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccc
Q 008991 42 LAACQGALLVVDAAQGV-QAQTVA-NFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGL 119 (547)
Q Consensus 42 l~~aD~ailVvDa~~g~-~~qt~~-~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv 119 (547)
++.+|.+++|+|+.++. +....+ ++..+...++|+++|+||+|+...............++ .+++++||++|.|+
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g---~~v~~vSA~~g~gi 152 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALG---YPVLAVSAKTGEGL 152 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCC---CeEEEEECCCCccH
Confidence 67899999999998876 544433 44455667999999999999965321111111122233 47899999999999
Q ss_pred cccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCcc
Q 008991 120 EHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTL 167 (547)
Q Consensus 120 ~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~l 167 (547)
++|++.|.. ...+ ..-.++.|+.++++...|..
T Consensus 153 ~~L~~~L~~-----------k~~~----~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 153 DELREYLKG-----------KTSV----LVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred HHHHhhhcc-----------ceEE----EECCCCCCHHHHHHHHhchh
Confidence 888877632 1111 22245667766666555544
No 328
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=1.3e-05 Score=82.32 Aligned_cols=83 Identities=28% Similarity=0.303 Sum_probs=56.6
Q ss_pred HhhcCEEEEEEECCCCCchhh--HHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccc
Q 008991 42 LAACQGALLVVDAAQGVQAQT--VANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGL 119 (547)
Q Consensus 42 l~~aD~ailVvDa~~g~~~qt--~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv 119 (547)
++.+|.+++|+|+.+...... ..++..+...++|+++|+||+|+.. +.+. .+++.+.+.....+++++||++|.|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~-~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEE-ARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHH-HHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 478999999999976533222 3344456677999999999999953 2222 22222222111237899999999999
Q ss_pred cccHHHH
Q 008991 120 EHVLPAV 126 (547)
Q Consensus 120 ~~Ll~~l 126 (547)
++|++.+
T Consensus 156 ~~L~~~l 162 (298)
T PRK00098 156 DELKPLL 162 (298)
T ss_pred HHHHhhc
Confidence 9988876
No 329
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.93 E-value=1.3e-05 Score=69.98 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=50.8
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH----HHHH--hcCCcEEeeeecCC
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF----YLAF--ESELTIIPVINKID 84 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~----~~~~--~~~lpiIvviNKiD 84 (547)
......+.+||++|+..+.......+..+|++++|+|+++..+.+....+ .... ..++|+++|.||.|
T Consensus 46 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 46 DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 45556789999999998888777779999999999999986544443222 2222 24699999999998
No 330
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.93 E-value=1.4e-05 Score=79.38 Aligned_cols=107 Identities=21% Similarity=0.332 Sum_probs=58.8
Q ss_pred EEEEEeCCCccchHHHHHHHH--------hhcCEEEEEEECCCCCchhh-HHHH----HHHHhcCCcEEeeeecCCCCCC
Q 008991 22 LLNLIDTPGHVDFSYEVSRSL--------AACQGALLVVDAAQGVQAQT-VANF----YLAFESELTIIPVINKIDQPTA 88 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l--------~~aD~ailVvDa~~g~~~qt-~~~~----~~~~~~~lpiIvviNKiDl~~~ 88 (547)
.+.|+|||||.+|...+...- ...=++++++|+..-..+.. ...+ ....+.++|.|.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 567999999998755443332 23447889999875444333 2222 2234479999999999999762
Q ss_pred CH---------------------HHHHHHHHHhcC-CCCc-cceeccccccccccccHHHHHh
Q 008991 89 DP---------------------DRVKAQLKSMFD-LDPS-EALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 89 ~~---------------------~~~~~~i~~~l~-~~~~-~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
.. ....+++.+.+. .... .++++|+.+++|+++|+..+-+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~ 234 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDK 234 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHH
Confidence 21 111222333321 2223 6899999999999999988754
No 331
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.91 E-value=2.7e-05 Score=82.21 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=67.5
Q ss_pred ccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC--HHHHHHHH---HHhcCCCC
Q 008991 31 HVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD--PDRVKAQL---KSMFDLDP 105 (547)
Q Consensus 31 h~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~--~~~~~~~i---~~~l~~~~ 105 (547)
..+|...+......++.+++|+|+.+....-........ .+.|+++|+||+|+...+ .+...+.+ .+..++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~ 127 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKP 127 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 356887777777889999999999775433222222222 378999999999986432 23333332 33345544
Q ss_pred ccceeccccccccccccHHHHHhh
Q 008991 106 SEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 106 ~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
..++.+||++|.|++++++.|.+.
T Consensus 128 ~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 128 VDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 332
>PRK12288 GTPase RsgA; Reviewed
Probab=97.88 E-value=3.2e-05 Score=81.02 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=60.1
Q ss_pred HhhcCEEEEEEECCCCCchhhHHHH-HHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccccccccc
Q 008991 42 LAACQGALLVVDAAQGVQAQTVANF-YLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLE 120 (547)
Q Consensus 42 l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~ 120 (547)
.+++|.+++|.+.....+......| ..+...++|.++|+||+|+.........+++.+.+.....+++++||+++.|++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gid 197 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLE 197 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHH
Confidence 3569999999998766666554444 445667899999999999965332122222222221112478999999999999
Q ss_pred ccHHHHHh
Q 008991 121 HVLPAVIE 128 (547)
Q Consensus 121 ~Ll~~l~~ 128 (547)
+|++.|..
T Consensus 198 eL~~~L~~ 205 (347)
T PRK12288 198 ELEAALTG 205 (347)
T ss_pred HHHHHHhh
Confidence 99998864
No 333
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.86 E-value=6e-05 Score=74.58 Aligned_cols=112 Identities=26% Similarity=0.446 Sum_probs=70.7
Q ss_pred CceEEEEEeCCCccc-hHH-----HHHHHHhh--cCEEEEEEECCCCCchhh-HHHH----HHHHhcCCcEEeeeecCCC
Q 008991 19 SSFLLNLIDTPGHVD-FSY-----EVSRSLAA--CQGALLVVDAAQGVQAQT-VANF----YLAFESELTIIPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~d-f~~-----~~~~~l~~--aD~ailVvDa~~g~~~qt-~~~~----~~~~~~~lpiIvviNKiDl 85 (547)
..+...+|||||+.+ |.. .+..+++. .-.+++|||....-.+-| ..+. ..+.+..+|.|++.||+|+
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 456788999999965 322 12223332 456778999766555444 2222 3345568999999999999
Q ss_pred CCCCH--------HHHHHHHHHh-cCC----------------CCccceeccccccccccccHHHHHhhC
Q 008991 86 PTADP--------DRVKAQLKSM-FDL----------------DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 86 ~~~~~--------~~~~~~i~~~-l~~----------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+..+ +...+.+.+. -+. .....+.+|+.+|.|.+++|.++.+.+
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 87643 2222222210 000 122478999999999999999987655
No 334
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=2.7e-05 Score=80.83 Aligned_cols=173 Identities=27% Similarity=0.380 Sum_probs=109.5
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-------CchhhHHHHHHHHhcCCc-EEeeeecCCCCCC
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESELT-IIPVINKIDQPTA 88 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~ 88 (547)
....|.++++|.|||.||...+....+++|+++++|.+..| ...||.++..++..+++. +++.+||+|....
T Consensus 78 ~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 78 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 34568899999999999999999999999999999998433 357899999999888865 7888999997542
Q ss_pred CHH-HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCcc
Q 008991 89 DPD-RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTL 167 (547)
Q Consensus 89 ~~~-~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~l 167 (547)
.+. ...+++.+. ..+-....|.. |+.. ..+.+...+.| +.-|.+
T Consensus 158 ~~s~~r~~ei~k~---------~~~~~~~~g~n----------~~~~----------~~~~~~~~g~~------~~t~ii 202 (391)
T KOG0052|consen 158 PYSEARYEEIKKE---------VSSYIKKIGYN----------PAAV----------LQDVYKIGGIG------VETGIS 202 (391)
T ss_pred Cccccchhhhhee---------eeeeeeccccC----------Chhh----------hccceeeccee------eeeeec
Confidence 210 001111000 00111111100 0000 11122222223 777889
Q ss_pred ccCCEEEEecCCCeeEEEEEEeecCCcccccccccCc-EEEEEecccccccccccCcccCCC
Q 008991 168 RKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQ-VGYVVTGMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 168 k~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-ig~i~~glk~~~~~~~Gdtl~~~~ 228 (547)
+.++.+...+.....++..+.+.+.. -.+..+|+ +|+...++ ...+++.|+.+.+..
T Consensus 203 e~~~~v~~~~~~~~~~vk~~~~~~~a---~s~~~p~~~vG~~~~~v-~v~~i~~gnV~~dsK 260 (391)
T KOG0052|consen 203 EPGMDVTFAPSGVTTEVKSVKVHHEA---GSEDLPGDNVGFNVKNV-SVKDIDRGNVVGDSK 260 (391)
T ss_pred cCccceeccccccccccccEEEEecc---CccCCCcceeeeecccC-ccCcccccceecccc
Confidence 99999988887777677666555422 22667788 45444443 567777888776655
No 335
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.83 E-value=8.2e-05 Score=75.96 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCCceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCCc---hhh-HHHHHHHHh-----
Q 008991 8 NGPGTSEAHNPSSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGVQ---AQT-VANFYLAFE----- 71 (547)
Q Consensus 8 ~~pG~T~~~~~~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~~---~qt-~~~~~~~~~----- 71 (547)
+..|+.+. .....|.+-|.||..+ ......+.+..|-..+.|||.+.... .+. ..+...+..
T Consensus 196 PnLGvV~~--~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L 273 (369)
T COG0536 196 PNLGVVRV--DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL 273 (369)
T ss_pred CcccEEEe--cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh
Confidence 34565555 3345688999999854 44456777888999999999875432 222 222222222
Q ss_pred cCCcEEeeeecCCCCCCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 72 SELTIIPVINKIDQPTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+.|.++|+||+|++.+. .+...+.+.+..++. ..+++||.+++|+++|+..+.+.+..
T Consensus 274 ~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~--~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 274 AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE--VFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC--cceeeehhcccCHHHHHHHHHHHHHH
Confidence 368999999999965432 233344444444432 22339999999999999988876644
No 336
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.82 E-value=0.00018 Score=73.20 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=60.8
Q ss_pred CCCceEEEEEeCCCccchHH---------------------HHHHHHh-------hcCEEEEEEECCC-CCchhhHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSY---------------------EVSRSLA-------ACQGALLVVDAAQ-GVQAQTVANFY 67 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~---------------------~~~~~l~-------~aD~ailVvDa~~-g~~~qt~~~~~ 67 (547)
++..+.+++|||||..|+.. +..+..+ .+|+++++++++. +......+.+.
T Consensus 59 ~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk 138 (276)
T cd01850 59 NGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMK 138 (276)
T ss_pred CCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHH
Confidence 45557899999999866532 1111112 3788999999874 67777777777
Q ss_pred HHHhcCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccc
Q 008991 68 LAFESELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSA 113 (547)
Q Consensus 68 ~~~~~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SA 113 (547)
.+.. ++|+|+|+||+|+...+ .....+.+.+.+.....+++..+.
T Consensus 139 ~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 139 RLSK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 7764 79999999999985422 223344444444333335555443
No 337
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.81 E-value=0.00015 Score=77.35 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=41.7
Q ss_pred CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccc-cHHHHHhhCCC
Q 008991 73 ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEH-VLPAVIERIPP 132 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~-Ll~~l~~~ip~ 132 (547)
..|+|+|+||+|+...+ .....+.+. ...+++++||+.+.++.+ +++.+.+++|.
T Consensus 217 ~KPvI~VlNK~D~~~~~--~~l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 217 SKPMVIAANKADLPPAE--ENIERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred CCCEEEEEEchhcccch--HHHHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 47899999999975322 223444443 335689999999999999 89999999875
No 338
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.79 E-value=5.2e-05 Score=78.07 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHH-HH--
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRV-KA-- 95 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~-~~-- 95 (547)
.++.+.|+||||...-. ...+..+|.++++.+...+...+. ... .-.++|.++++||+|+........ ..
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~---~~~-~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG---IKA-GLMEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH---HHH-HHhhhccEEEEEcccccchhHHHHHHHHH
Confidence 46888999999975322 235677898888865543322222 111 124678899999999976542111 11
Q ss_pred --HHHHhc----CCCCccceeccccccccccccHHHHHhhC
Q 008991 96 --QLKSMF----DLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 96 --~i~~~l----~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+.... ++. .+++++||++|.|+++++++|.+..
T Consensus 198 ~~~l~~l~~~~~~~~-~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 198 ALALEEIRRREDGWR-PPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHhhccccccCCC-CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 111111 121 2689999999999999999998764
No 339
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.77 E-value=6.6e-05 Score=76.10 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=73.0
Q ss_pred CCCceEEEEEeCCCccch-------HHHHHHHHhhcCEEEEEEECCCCCch-----------------------------
Q 008991 17 NPSSFLLNLIDTPGHVDF-------SYEVSRSLAACQGALLVVDAAQGVQA----------------------------- 60 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df-------~~~~~~~l~~aD~ailVvDa~~g~~~----------------------------- 60 (547)
+.++.+++++|+||...= ..++....+.||.+++|+|+......
T Consensus 106 ~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~ 185 (365)
T COG1163 106 EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKES 185 (365)
T ss_pred eecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEecc
Confidence 446789999999998541 24677788999999999999864320
Q ss_pred -------------hhHHHH-HHHHh---------------------------cCCcEEeeeecCCCCCCCHHHHHHHHHH
Q 008991 61 -------------QTVANF-YLAFE---------------------------SELTIIPVINKIDQPTADPDRVKAQLKS 99 (547)
Q Consensus 61 -------------qt~~~~-~~~~~---------------------------~~lpiIvviNKiDl~~~~~~~~~~~i~~ 99 (547)
-+.... ..+.+ .-+|.+.|+||+|+.+. +..+.+.+
T Consensus 186 gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~ 262 (365)
T COG1163 186 GGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---EELERLAR 262 (365)
T ss_pred CCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---HHHHHHHh
Confidence 000000 01111 12689999999999762 22334444
Q ss_pred hcCCCCccceeccccccccccccHHHHHhhC
Q 008991 100 MFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 100 ~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.. +.+++||++|.|+++|.+.|.+.+
T Consensus 263 ~~-----~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 263 KP-----NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred cc-----ceEEEecccCCCHHHHHHHHHHhh
Confidence 33 679999999999999999998865
No 340
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.76 E-value=0.00013 Score=76.80 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=87.0
Q ss_pred CCCCCC---eEEEe-------------CCCceEEEEEeCCCccc-------------------------hHHH----HHH
Q 008991 6 ELNGPG---TSEAH-------------NPSSFLLNLIDTPGHVD-------------------------FSYE----VSR 40 (547)
Q Consensus 6 ~s~~pG---~T~~~-------------~~~~~~l~liDTPGh~d-------------------------f~~~----~~~ 40 (547)
||+.+| +|.+- ++-...+.|+||+|..+ |... +..
T Consensus 60 pqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~k 139 (492)
T TIGR02836 60 PQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRK 139 (492)
T ss_pred CcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHH
Confidence 578889 66643 23346778999999865 1111 455
Q ss_pred HHh-hcCEEEEEE-ECC------CCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecc
Q 008991 41 SLA-ACQGALLVV-DAA------QGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTS 112 (547)
Q Consensus 41 ~l~-~aD~ailVv-Da~------~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~S 112 (547)
.+. .+|.+|+|. |++ ++......+....+++.++|+++++||.|-.........+++++.++. +++++|
T Consensus 140 VI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~v---pvl~v~ 216 (492)
T TIGR02836 140 VIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDV---PVLAMD 216 (492)
T ss_pred HHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCC---ceEEEE
Confidence 666 799999999 875 334444567778889999999999999994333344555677777764 566666
Q ss_pred cc--ccccccccHHHHHhhCCC
Q 008991 113 AK--TGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 113 Ak--~g~Gv~~Ll~~l~~~ip~ 132 (547)
+. +...|..+|+.+.-.+|-
T Consensus 217 c~~l~~~DI~~il~~vL~EFPv 238 (492)
T TIGR02836 217 VESMRESDILSVLEEVLYEFPI 238 (492)
T ss_pred HHHcCHHHHHHHHHHHHhcCCc
Confidence 64 556788888888777764
No 341
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.75 E-value=0.00018 Score=71.15 Aligned_cols=113 Identities=18% Similarity=0.277 Sum_probs=68.6
Q ss_pred CCceEEEEEeCCCccchHHH-----HHHHHhhcCEEEEEEECCCCCchhhHHHH----HHHHh--cCCcEEeeeecCCCC
Q 008991 18 PSSFLLNLIDTPGHVDFSYE-----VSRSLAACQGALLVVDAAQGVQAQTVANF----YLAFE--SELTIIPVINKIDQP 86 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~-----~~~~l~~aD~ailVvDa~~g~~~qt~~~~----~~~~~--~~lpiIvviNKiDl~ 86 (547)
.....+++||+||+.+|... ....++.+++.|+|+|+....-......+ ..+.+ -++.+.++++|+|+.
T Consensus 45 ~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 45 LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 34568999999999887654 56778999999999999854433333333 33333 367799999999986
Q ss_pred CCCH-HHH----HHHHHHh---cCCCCccceeccccccccccccHHHHHhhCC
Q 008991 87 TADP-DRV----KAQLKSM---FDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 87 ~~~~-~~~----~~~i~~~---l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+. +++ .+.+.+. .+.....++.+|... ..+-+.+..+++.+-
T Consensus 125 ~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 125 SEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 5432 112 2222222 222234567777776 577777777777553
No 342
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.73 E-value=5.8e-05 Score=72.99 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=66.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE--EeeeecCCCCC---CCHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTI--IPVINKIDQPT---ADPDRVKA 95 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi--IvviNKiDl~~---~~~~~~~~ 95 (547)
....+|+|.|.. ........ .+|.+++|+|+.++.+.+.. . ..++.. ++++||+|+.. .+.+...+
T Consensus 92 ~D~iiIEt~G~~-l~~~~~~~--l~~~~i~vvD~~~~~~~~~~--~----~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~ 162 (199)
T TIGR00101 92 LEMVFIESGGDN-LSATFSPE--LADLTIFVIDVAAGDKIPRK--G----GPGITRSDLLVINKIDLAPMVGADLGVMER 162 (199)
T ss_pred CCEEEEECCCCC-cccccchh--hhCcEEEEEEcchhhhhhhh--h----HhHhhhccEEEEEhhhccccccccHHHHHH
Confidence 455689999931 11111122 26889999999987653221 0 123444 89999999974 34455555
Q ss_pred HHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 96 QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 96 ~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+++.. + +..+++++||++|+|+++++++|.++.
T Consensus 163 ~~~~~-~-~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 163 DAKKM-R-GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHh-C-CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 66554 2 245899999999999999999998754
No 343
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.72 E-value=0.00013 Score=70.01 Aligned_cols=122 Identities=18% Similarity=0.146 Sum_probs=76.1
Q ss_pred CCCeEEEeC-----CCceEEEEEeCCCccchH-------HHHHHHH----hhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 9 GPGTSEAHN-----PSSFLLNLIDTPGHVDFS-------YEVSRSL----AACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 9 ~pG~T~~~~-----~~~~~l~liDTPGh~df~-------~~~~~~l----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
.+|+|+... ..+..+++|||||..++. .++.+.+ ..+|++++|+|+.. ........+....+.
T Consensus 32 ~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~ 110 (196)
T cd01852 32 ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQEL 110 (196)
T ss_pred CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHH
Confidence 356666542 245789999999987752 2333332 34799999999987 666666666555442
Q ss_pred -C----CcEEeeeecCCCCCCC-HH-------HHHHHHHHhcCCCC---ccceeccccccccccccHHHHHhhCCC
Q 008991 73 -E----LTIIPVINKIDQPTAD-PD-------RVKAQLKSMFDLDP---SEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 73 -~----lpiIvviNKiDl~~~~-~~-------~~~~~i~~~l~~~~---~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+ .++++++|+.|....+ .+ ..++.+-+.++-.. ..... |+..+.++.+|++.|.+.++.
T Consensus 111 fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 111 FGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHh
Confidence 3 4688999999975432 21 12223333332211 12233 678889999999999887764
No 344
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=9e-05 Score=68.07 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHH----HHhcCCcEEeeeecCCCCCCCHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYL----AFESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~----~~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
-.+.+++-+|..||..-..-+..++..||+++++||+.+....+. +..+.. ..-.++|+++..||+|.+.+-.+
T Consensus 61 Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se- 139 (193)
T KOG0077|consen 61 IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE- 139 (193)
T ss_pred ecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH-
Confidence 356889999999999988999999999999999999988654443 222222 22358999999999999987533
Q ss_pred HHHHHHHhcCC-----------------CCccceeccccccccccccHHHHHh
Q 008991 93 VKAQLKSMFDL-----------------DPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 93 ~~~~i~~~l~~-----------------~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
++++..+++ .+.+++.||...+.|.-+-+.++.+
T Consensus 140 --~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 140 --DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred --HHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 233332221 2234677777777776555555543
No 345
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.71 E-value=0.00015 Score=72.12 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=82.0
Q ss_pred ceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh--cCCcEEeeeecCCCCCC--
Q 008991 20 SFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--SELTIIPVINKIDQPTA-- 88 (547)
Q Consensus 20 ~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~lpiIvviNKiDl~~~-- 88 (547)
...++||||||..| +.......+...|.+++++|+.+..-.-....|+.... .+.++++++|.+|+...
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 36789999999977 66667888889999999999988765555666655543 35789999999997422
Q ss_pred --CH-------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 89 --DP-------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 89 --~~-------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
+. ++..+.+.+.+. +-.|++.+|+..++|++.+..++++.+|..
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQ-EVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHh-hcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 11 111122222221 124789999999999999999999999843
No 346
>PRK01889 GTPase RsgA; Reviewed
Probab=97.69 E-value=0.0001 Score=77.68 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=62.0
Q ss_pred HhhcCEEEEEEECCCCCchhh-HHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccccccccc
Q 008991 42 LAACQGALLVVDAAQGVQAQT-VANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLE 120 (547)
Q Consensus 42 l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~ 120 (547)
.+++|.+++|+++........ ...+..+...+++.++|+||+||... .+...+++... . ...+++.+||++|.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~-~-~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEAL-A-PGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHh-C-CCCcEEEEECCCCccHH
Confidence 467899999999976666644 45666778889999999999999653 33334555544 2 23478999999999999
Q ss_pred ccHHHH
Q 008991 121 HVLPAV 126 (547)
Q Consensus 121 ~Ll~~l 126 (547)
+|.+.+
T Consensus 187 ~L~~~L 192 (356)
T PRK01889 187 VLAAWL 192 (356)
T ss_pred HHHHHh
Confidence 888877
No 347
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.65 E-value=5.6e-05 Score=66.32 Aligned_cols=99 Identities=23% Similarity=0.205 Sum_probs=70.7
Q ss_pred EEeCCCc----cchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC-CCCHHHHHHHHHH
Q 008991 25 LIDTPGH----VDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP-TADPDRVKAQLKS 99 (547)
Q Consensus 25 liDTPGh----~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~-~~~~~~~~~~i~~ 99 (547)
.|||||- ..+-......+..+|..++|-.++++.+.-.-- .+.-...|+|-+++|.|++ .++.+.+.+.+.+
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~---f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e 117 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPG---FLDIGVKKVIGVVTKADLAEDADISLVKRWLRE 117 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcc---cccccccceEEEEecccccchHhHHHHHHHHHH
Confidence 7999994 333334455566799999999998875432211 1222456799999999998 5566665555554
Q ss_pred hcCCCCccceeccccccccccccHHHHHhh
Q 008991 100 MFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 100 ~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
. | ..+++.+|+.++.|+++|++.|...
T Consensus 118 a-G--a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 118 A-G--AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred c-C--CcceEEEeccCcccHHHHHHHHHhh
Confidence 3 4 4689999999999999999988654
No 348
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.63 E-value=0.00035 Score=63.31 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=87.0
Q ss_pred CCceEEEEEeCCCccchHHH-HHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc-----CCcEEeeeecCCCCCCCH-
Q 008991 18 PSSFLLNLIDTPGHVDFSYE-VSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES-----ELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~-~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~lpiIvviNKiDl~~~~~- 90 (547)
|-.-.+.|.||.|..+...+ -..++..+|+.+||.|..+..++|-.+.+..-... .+|+++..||+|+.+...
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence 34457889999999988444 45677889999999999998888887777554332 488999999999953211
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCc
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSS 140 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p 140 (547)
.++.+.+...-. ...+.++|.....+-+.|..+...+..|.....-|
T Consensus 137 d~d~A~~Wa~rEk---vkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 137 DMDVAQIWAKREK---VKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred CHHHHHHHHhhhh---eeEEEEEeccchhhhhHHHHHHHhccCCcccccCc
Confidence 222333332222 24689999999999999999999888876543333
No 349
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.60 E-value=0.00011 Score=66.69 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=86.0
Q ss_pred eEEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHHHhcCCc--EEeeeecCCCCCC
Q 008991 12 TSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLAFESELT--IIPVINKIDQPTA 88 (547)
Q Consensus 12 ~T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~~~lp--iIvviNKiDl~~~ 88 (547)
.|....+.+..+.+||..|+++|..+.--+...+-++++++|.+....... .+++++|+..+.. .|+|.+|-|+--.
T Consensus 60 kt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~ 139 (205)
T KOG1673|consen 60 KTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFID 139 (205)
T ss_pred eEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhc
Confidence 355567788999999999999998888777778888899999988766665 4555777766543 4778999986322
Q ss_pred CH----HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 89 DP----DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~----~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
-+ +.+..+-+..-..-+.+.+++|+-...||..+|..+...+
T Consensus 140 lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 140 LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHH
Confidence 11 2222233333333445789999999999999998877644
No 350
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.56 E-value=0.00016 Score=70.26 Aligned_cols=100 Identities=22% Similarity=0.195 Sum_probs=64.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC---HHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD---PDRVKAQL 97 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~---~~~~~~~i 97 (547)
..+-|++|.|...... ......+..+.|+|+.++...+. ......+.|.++++||+|+.+.. ..+..+.+
T Consensus 103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l 175 (207)
T TIGR00073 103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGFDVEKMKADA 175 (207)
T ss_pred CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchhhHHHHHHHH
Confidence 4667899999311111 11123566678999987643222 11223456789999999997532 33444444
Q ss_pred HHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 98 KSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 98 ~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
++.. +..+++.+||++|.|++++++++.++
T Consensus 176 ~~~~--~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 176 KKIN--PEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHhC--CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4432 33589999999999999999999765
No 351
>PRK13796 GTPase YqeH; Provisional
Probab=97.55 E-value=0.00023 Score=75.26 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=62.5
Q ss_pred chHHHHHHHHhhcC-EEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC--HHHHH---HHHHHhcCCCCc
Q 008991 33 DFSYEVSRSLAACQ-GALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD--PDRVK---AQLKSMFDLDPS 106 (547)
Q Consensus 33 df~~~~~~~l~~aD-~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~--~~~~~---~~i~~~l~~~~~ 106 (547)
+|.. +...+...| .+++|||+.+....... .+... ..+.|+++|+||+|+...+ .++.. +...+.+++...
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~-~L~~~-~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~ 134 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIP-GLHRF-VGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPV 134 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhH-HHHHH-hCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcC
Confidence 4544 555666666 88899999885433222 22211 1378999999999996432 22222 222334465555
Q ss_pred cceeccccccccccccHHHHHhhC
Q 008991 107 EALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 107 ~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+++.+||++|.|++++++.|.+..
T Consensus 135 ~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 135 DVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999999997764
No 352
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.00029 Score=70.02 Aligned_cols=123 Identities=19% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCCCCeEEEeCC--CceEEEEEeCCCc----------cchHHHHHHHHhh---cCEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 7 LNGPGTSEAHNP--SSFLLNLIDTPGH----------VDFSYEVSRSLAA---CQGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~~~~--~~~~l~liDTPGh----------~df~~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
|.++|.|+..+- -+-.+.++|.||+ .|+...+..++-. .=.+.|++|++.+++.-+.....++.+
T Consensus 167 k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge 246 (320)
T KOG2486|consen 167 KSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE 246 (320)
T ss_pred CCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh
Confidence 348999998753 3456789999993 4566656555543 345788999999999999999999999
Q ss_pred cCCcEEeeeecCCCCCCCH---HHHHHHHHH-hcCC------CCccceeccccccccccccHHHHHhh
Q 008991 72 SELTIIPVINKIDQPTADP---DRVKAQLKS-MFDL------DPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~~---~~~~~~i~~-~l~~------~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
+++|..+|+||||....-. .+....+.. ..++ ..-|++.+|+.++.|+++|+-.+.+.
T Consensus 247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 9999999999999743211 111111111 1111 11256789999999999988766543
No 353
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.43 E-value=0.00075 Score=67.10 Aligned_cols=70 Identities=20% Similarity=0.114 Sum_probs=53.8
Q ss_pred ceEEEEEeCCCccch-------------HHHHHHHHhh-cCEEEEEEECCCCCchhh-HHHHHHHHhcCCcEEeeeecCC
Q 008991 20 SFLLNLIDTPGHVDF-------------SYEVSRSLAA-CQGALLVVDAAQGVQAQT-VANFYLAFESELTIIPVINKID 84 (547)
Q Consensus 20 ~~~l~liDTPGh~df-------------~~~~~~~l~~-aD~ailVvDa~~g~~~qt-~~~~~~~~~~~lpiIvviNKiD 84 (547)
...++|+||||..+. ...+..++.. .+.+++|+|+..++..+. .+....+...+.|+++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 357899999999632 1245566774 568999999999888776 5677777778999999999999
Q ss_pred CCCCC
Q 008991 85 QPTAD 89 (547)
Q Consensus 85 l~~~~ 89 (547)
.....
T Consensus 204 ~~~~~ 208 (240)
T smart00053 204 LMDEG 208 (240)
T ss_pred CCCcc
Confidence 87543
No 354
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.42 E-value=0.00041 Score=73.91 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=64.0
Q ss_pred eEEEEEeCCCccchH------HHHH--HHHhhc-CEEEEEEECCC--CCchhh-HHHHHHHH--hcCCcEEeeeecCCCC
Q 008991 21 FLLNLIDTPGHVDFS------YEVS--RSLAAC-QGALLVVDAAQ--GVQAQT-VANFYLAF--ESELTIIPVINKIDQP 86 (547)
Q Consensus 21 ~~l~liDTPGh~df~------~~~~--~~l~~a-D~ailVvDa~~--g~~~qt-~~~~~~~~--~~~lpiIvviNKiDl~ 86 (547)
..|+.+||||.-|-- -|+. .+++.. -+++++.|.++ |-+... ...+...+ =.|.|.|+|+||+|+.
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m 294 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAM 294 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccccc
Confidence 578899999986621 1222 233322 24677888764 333222 22222222 2488999999999985
Q ss_pred CC-CHHHHHHHH-HHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 87 TA-DPDRVKAQL-KSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 87 ~~-~~~~~~~~i-~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.. +.+.-.+++ +...+....+++..|+.+.+||.++....++.+
T Consensus 295 ~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 295 RPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred CccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHH
Confidence 43 222222222 222233335789999999999988766665544
No 355
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.33 E-value=0.0014 Score=56.70 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=54.9
Q ss_pred ccCceeEEEEeeeccc--------cccEEEEEEEecCccccCCEEEEecC-------CCeeE--EEEEEeecCCcccccc
Q 008991 137 INSSLRMLLLDSYYDE--------YKGVICHVAVVDGTLRKGDKISSAAT-------GQAYE--IVDVGIMHPELTPTGV 199 (547)
Q Consensus 137 ~~~p~~~~v~~~~~d~--------~~G~v~~~rV~~G~lk~gd~v~~~~~-------~~~~~--v~~i~~~~~~~~~v~~ 199 (547)
.++|+.+.|.++|-.. .+|.|+-+++.+|.|+.||+|.+.+. +..++ .+.|..+......+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4678899998888544 89999999999999999999988753 22222 3334444555678899
Q ss_pred cccCcEEEEE
Q 008991 200 LLTGQVGYVV 209 (547)
Q Consensus 200 ~~aGdig~i~ 209 (547)
+.||+.+.+-
T Consensus 82 a~pGgliGvg 91 (113)
T cd03688 82 AVPGGLIGVG 91 (113)
T ss_pred EeCCCeEEEc
Confidence 9999977663
No 356
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.26 E-value=0.0016 Score=55.23 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=60.5
Q ss_pred eEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccccccccc
Q 008991 142 RMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIG 221 (547)
Q Consensus 142 ~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~G 221 (547)
++.|.++..|++.|.++.+-|.+|+|++||.+....... +|+.+. .+...+++++.||+.+.|. |+++.. ..|
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~g--kVr~l~--d~~g~~v~~a~Ps~~V~I~-G~~~~P--~aG 74 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYG--KVRAMF--DENGKRVKEAGPSTPVEIL-GLKGVP--QAG 74 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccccc--EEEEEE--CCCCCCCCEECCCCcEEEc-CCCCCC--CCC
Confidence 578999999999999999999999999999998865433 666553 3445778999999998875 764432 457
Q ss_pred CcccC
Q 008991 222 DTLYH 226 (547)
Q Consensus 222 dtl~~ 226 (547)
|.+..
T Consensus 75 d~~~~ 79 (95)
T cd03702 75 DKFLV 79 (95)
T ss_pred CEEEE
Confidence 76653
No 357
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.14 E-value=0.0023 Score=60.36 Aligned_cols=68 Identities=25% Similarity=0.215 Sum_probs=54.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA 88 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~ 88 (547)
..|.+.++|||+... ......+..+|.+++++.............+..+...+.|+.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 568899999997643 35567788999999999988665555677777777888999999999997543
No 358
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.01 E-value=0.0015 Score=67.87 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred CCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCc-----------hhhHHHHHHHHh----c
Q 008991 9 GPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQ-----------AQTVANFYLAFE----S 72 (547)
Q Consensus 9 ~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~-----------~qt~~~~~~~~~----~ 72 (547)
+-|++.. +..+++.+.+||++|+......|..++..++++++|+|.++-.+ .++...+..... .
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 4465443 34457889999999999999999999999999999999986321 122333333322 3
Q ss_pred CCcEEeeeecCCCC
Q 008991 73 ELTIIPVINKIDQP 86 (547)
Q Consensus 73 ~lpiIvviNKiDl~ 86 (547)
+.|+++++||.|+.
T Consensus 228 ~~pill~~NK~D~f 241 (317)
T cd00066 228 NTSIILFLNKKDLF 241 (317)
T ss_pred CCCEEEEccChHHH
Confidence 78999999999973
No 359
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.98 E-value=0.002 Score=67.50 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=58.7
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-----------chhhHHHHHHHHh----
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-----------QAQTVANFYLAFE---- 71 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-----------~~qt~~~~~~~~~---- 71 (547)
++-|++.. +.-+++.+.+||..|+..+...|..++..++++++|+|.++-. ..++...|.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 34565553 3445678899999999999999999999999999999998631 1223344443332
Q ss_pred cCCcEEeeeecCCCC
Q 008991 72 SELTIIPVINKIDQP 86 (547)
Q Consensus 72 ~~lpiIvviNKiDl~ 86 (547)
.+.|+++++||.|+.
T Consensus 250 ~~~piil~~NK~D~~ 264 (342)
T smart00275 250 ANTSIILFLNKIDLF 264 (342)
T ss_pred cCCcEEEEEecHHhH
Confidence 368999999999974
No 360
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.96 E-value=0.0047 Score=52.43 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=59.1
Q ss_pred eEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccccccccc
Q 008991 142 RMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIG 221 (547)
Q Consensus 142 ~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~G 221 (547)
++.|.++..|++.|.++.+-|.+|+|++||.+...... -+|+.+. ..+...+.++.|++.+.+. |+++. ...|
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~--d~~g~~v~~a~Ps~~v~i~-g~~~~--p~aG 74 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMV--DENGKALLEAGPSTPVEIL-GLKDV--PKAG 74 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEE--CCCCCCccccCCCCCEEEe-eecCC--ccCC
Confidence 57899999999999999999999999999999886533 3455432 3344678899999987665 77543 4567
Q ss_pred CcccC
Q 008991 222 DTLYH 226 (547)
Q Consensus 222 dtl~~ 226 (547)
|.+..
T Consensus 75 d~~~~ 79 (95)
T cd03701 75 DGVLV 79 (95)
T ss_pred CEEEE
Confidence 76643
No 361
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.95 E-value=0.00057 Score=67.88 Aligned_cols=100 Identities=32% Similarity=0.389 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH--HHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA--NFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~--~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
-+|.+.|+.|-|--.- |+ .....||.+++|+-...|.+.|... .++.+ =|+|+||.|++.+ +....+
T Consensus 120 aG~D~IiiETVGvGQs--E~-~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------Di~vVNKaD~~gA--~~~~~~ 188 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQS--EV-DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------DIFVVNKADRPGA--DRTVRD 188 (266)
T ss_dssp TT-SEEEEEEESSSTH--HH-HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--SHHHH--HHHHHH
T ss_pred cCCCEEEEeCCCCCcc--HH-HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------cEEEEeCCChHHH--HHHHHH
Confidence 3567789999875322 11 2356799999999988887777633 33333 3899999997654 344555
Q ss_pred HHHhcCCC-------CccceeccccccccccccHHHHHhh
Q 008991 97 LKSMFDLD-------PSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 97 i~~~l~~~-------~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
++..+.+. ..|++.+||.+|.|+++|+++|.++
T Consensus 189 l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 189 LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 55544221 1279999999999999999999865
No 362
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.92 E-value=0.002 Score=65.50 Aligned_cols=87 Identities=24% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHhhcCEEEEEEECCCCCc-h-hhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccccccc
Q 008991 41 SLAACQGALLVVDAAQGVQ-A-QTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQG 118 (547)
Q Consensus 41 ~l~~aD~ailVvDa~~g~~-~-qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~G 118 (547)
.....|-+++|+++.++.- . +-.+.+-.+...++..++++||+|+........ ++....+.--..+++.+|++++.|
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEEecCcCccc
Confidence 3455888999999887632 2 224566677788999999999999976544332 232222221223789999999999
Q ss_pred ccccHHHHHh
Q 008991 119 LEHVLPAVIE 128 (547)
Q Consensus 119 v~~Ll~~l~~ 128 (547)
+++|.+.+..
T Consensus 155 ~~~l~~~l~~ 164 (301)
T COG1162 155 LEELAELLAG 164 (301)
T ss_pred HHHHHHHhcC
Confidence 9988887743
No 363
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.90 E-value=0.00038 Score=65.19 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=81.3
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc------C--CcEEeeeecCCCCCCCHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES------E--LTIIPVINKIDQPTADPD 91 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~------~--lpiIvviNKiDl~~~~~~ 91 (547)
-+.+.|||..|+..|..+..-+++.+.++.+|+|.+....+....-|..-... | +|+++..||+|....-..
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~ 153 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN 153 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh
Confidence 35678999999999999998899999999999999988777766666543322 3 458889999998654322
Q ss_pred H---HHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 92 R---VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 92 ~---~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+ ..++....-|+ ...+.+|+|.+.+++|..+.+++.+
T Consensus 154 ~~~~~~d~f~kengf--~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 154 EATRQFDNFKKENGF--EGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred hhHHHHHHHHhccCc--cceeeeccccccChhHHHHHHHHHH
Confidence 2 22333333333 3468999999999999888888765
No 364
>PTZ00258 GTP-binding protein; Provisional
Probab=96.84 E-value=0.0061 Score=64.77 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=27.7
Q ss_pred EEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECC
Q 008991 22 LLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAA 55 (547)
Q Consensus 22 ~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~ 55 (547)
++.|+||||... ........++.||++++|||+.
T Consensus 86 qi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 86 QLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 589999999753 4446667788999999999985
No 365
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.83 E-value=0.0021 Score=59.61 Aligned_cols=63 Identities=25% Similarity=0.284 Sum_probs=45.8
Q ss_pred eEEEEEeCCCccch----HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh-cCCcEEeeeecC
Q 008991 21 FLLNLIDTPGHVDF----SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE-SELTIIPVINKI 83 (547)
Q Consensus 21 ~~l~liDTPGh~df----~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~lpiIvviNKi 83 (547)
..+.|+||||..+. ...+..++..+|.+|+|+++.+....+....+..... .+-..++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 45789999999652 2457788899999999999998766555555544444 444588999985
No 366
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.80 E-value=0.0044 Score=58.49 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=33.1
Q ss_pred CEEEEEEECCCCCchhhHHHHHH--HHhcCCcEEeeeecCCCCC
Q 008991 46 QGALLVVDAAQGVQAQTVANFYL--AFESELTIIPVINKIDQPT 87 (547)
Q Consensus 46 D~ailVvDa~~g~~~qt~~~~~~--~~~~~lpiIvviNKiDl~~ 87 (547)
|.+++|+||..+........... ....+.|+|+|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998877666555555 3345789999999999953
No 367
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.74 E-value=0.0058 Score=49.99 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=49.9
Q ss_pred ceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccccccc
Q 008991 140 SLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEAR 219 (547)
Q Consensus 140 p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~ 219 (547)
|.+..|...+.-..++ +..++|..|+|++|..+ .|.. +..|..++.+..++++|.+||-+++. +.+..++.
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~~--iG~I~sIe~~~k~v~~A~~G~eVai~--Ieg~~~i~ 74 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGRK--IGRIKSIEDNGKNVDEAKKGDEVAIS--IEGPTQIK 74 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSSC--EEEEEEEEETTEEESEEETT-EEEEE--EET--TB-
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCEE--EEEEEEeEECCcCccccCCCCEEEEE--EeCCccCC
Confidence 4455555555444556 66679999999999999 4433 55555666667899999999977774 44445888
Q ss_pred ccCccc
Q 008991 220 IGDTLY 225 (547)
Q Consensus 220 ~Gdtl~ 225 (547)
.||+|.
T Consensus 75 eGDiLy 80 (81)
T PF14578_consen 75 EGDILY 80 (81)
T ss_dssp TT-EEE
T ss_pred CCCEEe
Confidence 888874
No 368
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.49 E-value=0.009 Score=60.43 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=69.9
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH--HHHHHHhcCCcEEeeeecCCCCCCCHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA--NFYLAFESELTIIPVINKIDQPTADPDRVK 94 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~--~~~~~~~~~lpiIvviNKiDl~~~~~~~~~ 94 (547)
+.-+|.+.|+.|-|--.-.-. ....||.+++|.=+.-|.+.|... .++.+ =|+|+||.|+.+++ ...
T Consensus 140 dAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------Di~vINKaD~~~A~--~a~ 208 (323)
T COG1703 140 DAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA------DIIVINKADRKGAE--KAA 208 (323)
T ss_pred HhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh------heeeEeccChhhHH--HHH
Confidence 345677889999875432212 345789999988887887777744 33332 38999999987653 222
Q ss_pred HHHHHhc----------CCCCccceeccccccccccccHHHHHhhC
Q 008991 95 AQLKSMF----------DLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 95 ~~i~~~l----------~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.++...+ ++.+ |++.+||.+|+|+++|++++.++.
T Consensus 209 r~l~~al~~~~~~~~~~~W~p-pv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 209 RELRSALDLLREVWRENGWRP-PVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHHhhcccccccCCCC-ceeEeeeccCCCHHHHHHHHHHHH
Confidence 2332222 2333 799999999999999999998765
No 369
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.14 E-value=0.03 Score=48.59 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=39.3
Q ss_pred eEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCe--eEEEEEEe
Q 008991 142 RMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQA--YEIVDVGI 189 (547)
Q Consensus 142 ~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~--~~v~~i~~ 189 (547)
++.|.++..+++.|.++.+-+++|+|++||.|.+...... .+|+.+..
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~ 51 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLK 51 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecC
Confidence 5678899999999999999999999999999999876542 35665543
No 370
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.012 Score=60.87 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=56.3
Q ss_pred EEEEEeCCCcc-----------chHHHHHHHHhhcCEEEEEEECCC-CCchhhHHHHHHHHhcCCcEEeeeecCCCCC
Q 008991 22 LLNLIDTPGHV-----------DFSYEVSRSLAACQGALLVVDAAQ-GVQAQTVANFYLAFESELTIIPVINKIDQPT 87 (547)
Q Consensus 22 ~l~liDTPGh~-----------df~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~ 87 (547)
.++++||||.- ||....+.....||.++|++|+.. .++.++.+.+..++.+.-.+-+|+||.|..+
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVD 225 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccC
Confidence 58999999973 577777778889999999999864 5788889999988888888899999999754
No 371
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.14 E-value=0.033 Score=51.91 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=57.6
Q ss_pred EEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHHHHHHHHHHh
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPDRVKAQLKSM 100 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~~~~~~i~~~ 100 (547)
.+.++|||+..+. .....+..||.+++++++.......+...+..+...+.+ ..+++|++|.......+..+++.+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 5789999987554 456678999999999998776555566666666666665 6789999997544444445667776
Q ss_pred cCC
Q 008991 101 FDL 103 (547)
Q Consensus 101 l~~ 103 (547)
++.
T Consensus 142 ~~~ 144 (179)
T cd02036 142 LGV 144 (179)
T ss_pred hCC
Confidence 665
No 372
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.06 E-value=0.12 Score=59.86 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=110.5
Q ss_pred EeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeee-cCCCCCCCHHHHHHHHHHhcCCC
Q 008991 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN-KIDQPTADPDRVKAQLKSMFDLD 104 (547)
Q Consensus 26 iDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviN-KiDl~~~~~~~~~~~i~~~l~~~ 104 (547)
-|+-|..+-.......+..-+.-+=|+.+.-|. -|..-..+|...+- +|+..| ++|. ...++.+..++
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~--it~~Dv~la~~~~a-~ii~Fnv~~~~-------~~~~~a~~~~v- 662 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGA--ITESDVTLAAASNA-IIIGFNVRPDA-------KARKLAEQEGV- 662 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCC--CCHHHHHHHHhcCC-EEEEEcCCCCH-------HHHHHHHHcCC-
Confidence 367777666666666666556666666654443 33333444444443 344444 4431 12233333332
Q ss_pred CccceeccccccccccccHHHHHhhC---CCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCe
Q 008991 105 PSEALLTSAKTGQGLEHVLPAVIERI---PPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQA 181 (547)
Q Consensus 105 ~~~vi~~SAk~g~Gv~~Ll~~l~~~i---p~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~ 181 (547)
.+...+ =|-+|++.+-..+ .+|.....-.-.+.|-.+|..+..|.|+-++|.+|+++.|..+.+.+.|..
T Consensus 663 --~i~~~~-----iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~ 735 (787)
T PRK05306 663 --DIRYYS-----IIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVV 735 (787)
T ss_pred --EEEEeC-----hHHHHHHHHHHHHhhccCchhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEE
Confidence 222211 1233444444332 233333333446677777777778999999999999999999999998876
Q ss_pred eEEEEEEeecCCcccccccccCcEEEEEecccccccccccCccc
Q 008991 182 YEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLY 225 (547)
Q Consensus 182 ~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~ 225 (547)
.-..+|..+.....++.++..|+-|.|. +.+..+++.||.|-
T Consensus 736 i~~g~i~slk~~k~~v~ev~~g~ecgi~--~~~~~d~~~gD~ie 777 (787)
T PRK05306 736 IYEGELESLKRFKDDVKEVRAGYECGIG--LENYNDIKEGDIIE 777 (787)
T ss_pred EEEeEEehhcccCcCccEeCCCCEEEEE--eeccccCCCCCEEE
Confidence 5555666666556789999999987774 56778999999884
No 373
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.06 E-value=0.1 Score=58.68 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=106.0
Q ss_pred EeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeee-cCCCCCCCHHHHHHHHHHhcCCC
Q 008991 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN-KIDQPTADPDRVKAQLKSMFDLD 104 (547)
Q Consensus 26 iDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviN-KiDl~~~~~~~~~~~i~~~l~~~ 104 (547)
-||-|..+-.......+..-+.-+=++.+.-|. -|..-..+|...+- +|+..| |++. ..+++.+..+.
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~--i~~~Dv~~a~~~~a-~i~~Fnv~~~~-------~~~~~a~~~~v- 460 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGG--ITETDISLASASNA-IIIGFNVRPDA-------TAKNVAEAENV- 460 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecCC--CchhhHHHHHhcCC-EEEEEecCCCH-------HHHHHHHHcCC-
Confidence 366666555555555555555555555554432 23333333443443 343443 3331 12233333333
Q ss_pred CccceeccccccccccccHHHHHhhC---CCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCe
Q 008991 105 PSEALLTSAKTGQGLEHVLPAVIERI---PPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQA 181 (547)
Q Consensus 105 ~~~vi~~SAk~g~Gv~~Ll~~l~~~i---p~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~ 181 (547)
++... .=|-+|++.+.+++ .+|......-..+.|..+|..+..|.++-++|.+|++++|..+++.+.+..
T Consensus 461 --~i~~~-----~iIY~l~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~ 533 (587)
T TIGR00487 461 --DIRYY-----SVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVV 533 (587)
T ss_pred --eEEEe-----ChHHHHHHHHHHHHHhccCcceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEE
Confidence 22211 11234444444433 223322223345666677766667999999999999999999999987776
Q ss_pred eEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccC
Q 008991 182 YEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYH 226 (547)
Q Consensus 182 ~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~ 226 (547)
.....|..+.....+++++..|+-|.+ .+++..+++.||.|-.
T Consensus 534 i~~g~i~sl~~~k~~v~ev~~g~ecgi--~~~~~~~~~~gD~i~~ 576 (587)
T TIGR00487 534 IFEGEIDSLKRFKDDVKEVSNGYECGI--GIKNYNDIKEGDIIEA 576 (587)
T ss_pred EEeccchHhhccCccccEECCCCEEEE--EEeccccCCCCCEEEE
Confidence 544555555555678999999997777 3567789999999854
No 374
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.01 E-value=0.031 Score=58.84 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=27.4
Q ss_pred EEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECC
Q 008991 22 LLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAA 55 (547)
Q Consensus 22 ~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~ 55 (547)
.+.|+||||..+ ........++.||++++|||+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 589999999653 3345666788999999999995
No 375
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.99 E-value=0.16 Score=58.47 Aligned_cols=179 Identities=11% Similarity=0.028 Sum_probs=112.5
Q ss_pred EeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeee-cCCCCCCCHHHHHHHHHHhcCCC
Q 008991 26 IDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN-KIDQPTADPDRVKAQLKSMFDLD 104 (547)
Q Consensus 26 iDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviN-KiDl~~~~~~~~~~~i~~~l~~~ 104 (547)
-||-|..+-.......+.....-+=|+.+.-| .-|..-..+|...+- +|+..| +.+. ...+..+..++
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG--~it~~Dv~lA~~~~a-~ii~Fnv~~~~-------~~~~~a~~~~v- 617 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLG--EVTETDVEFASTTNA-EILAFNTNLAP-------GAKKAARKLNI- 617 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecC--CCCHHHHHHHHhcCC-EEEEeeCCCCH-------HHHHHHHHcCC-
Confidence 48888877666666666666666667776544 334444445555554 444444 4431 12233333333
Q ss_pred CccceeccccccccccccHHHHHhhC---CCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCe
Q 008991 105 PSEALLTSAKTGQGLEHVLPAVIERI---PPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQA 181 (547)
Q Consensus 105 ~~~vi~~SAk~g~Gv~~Ll~~l~~~i---p~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~ 181 (547)
.+... .=|-+|++.+-..+ .+|......+-+|.|..+|..+. |.|+-++|.+|+++.|..+++.+.+..
T Consensus 618 --~i~~~-----~iIY~lid~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~ 689 (742)
T CHL00189 618 --IIKEY-----QVIYDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKL 689 (742)
T ss_pred --EEEEe-----ChHHHHHHHHHHHHhhccCceeeeeeceeEEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeE
Confidence 22211 11233444443332 23443334455666777776555 999999999999999999999998877
Q ss_pred eEEEEEEeecCCcccccccccCcEEEEEecccccccccccCccc
Q 008991 182 YEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLY 225 (547)
Q Consensus 182 ~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~ 225 (547)
.-...|..+.....++.++..|+-|.+ .+.+..++++||.|-
T Consensus 690 i~~G~i~slk~~k~~v~ev~~g~ecgi--~i~~~~d~~~gD~ie 731 (742)
T CHL00189 690 IYEGKITSLKRVKEDVEEAQEGNECGI--FIEEFQLWQSGDKIH 731 (742)
T ss_pred EEEeEEhhHhhcCccccEeCCCCEEEE--EeeCCCCCCcCCEEE
Confidence 555556666655678999999998877 357789999999884
No 376
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.95 E-value=0.019 Score=62.64 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchh--hHHHHHHHHh-----cCCcEEeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQ--TVANFYLAFE-----SELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~q--t~~~~~~~~~-----~~lpiIvviNKiDl~~~~~~ 91 (547)
+.....++||+.-.+-...+...++.||.+.++.+.++..+.. +..|+-+.++ .++|+|+|.||+|.......
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 3455789999977776677788899999999999887743222 2334433333 46899999999998543222
Q ss_pred ---H-HHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 92 ---R-VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 92 ---~-~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
. +.--+.+.-.+ +.++.|||++-.++.++|..-...+-.|.
T Consensus 134 s~e~~~~pim~~f~Ei--EtciecSA~~~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 134 SDEVNTLPIMIAFAEI--ETCIECSALTLANVSELFYYAQKAVIHPT 178 (625)
T ss_pred chhHHHHHHHHHhHHH--HHHHhhhhhhhhhhHhhhhhhhheeeccC
Confidence 1 11111111111 35799999999999999887766554443
No 377
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.91 E-value=0.02 Score=59.53 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=71.8
Q ss_pred EEEeCCCcc-chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcC
Q 008991 24 NLIDTPGHV-DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFD 102 (547)
Q Consensus 24 ~liDTPGh~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~ 102 (547)
.+-+-|||. ++..++...+..+|.++-|+||.+.........-.... +.|.++|+||+|+... ...+++.+.+.
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~---~~~~~W~~~~~ 87 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPK---EVTKKWKKYFK 87 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCH---HHHHHHHHHHH
Confidence 355669995 58889999999999999999999987777665555443 4556999999999653 22455555554
Q ss_pred CC-CccceeccccccccccccHHHH
Q 008991 103 LD-PSEALLTSAKTGQGLEHVLPAV 126 (547)
Q Consensus 103 ~~-~~~vi~~SAk~g~Gv~~Ll~~l 126 (547)
.. ....+.+|++++.+...+..++
T Consensus 88 ~~~~~~~~~v~~~~~~~~~~i~~~~ 112 (322)
T COG1161 88 KEEGIKPIFVSAKSRQGGKKIRKAL 112 (322)
T ss_pred hcCCCccEEEEeecccCccchHHHH
Confidence 33 3456889999999888877433
No 378
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.89 E-value=0.0096 Score=60.65 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=49.9
Q ss_pred EEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC---CHHHHHHHHHHhcCCCCccceeccccccccccccHH
Q 008991 48 ALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA---DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLP 124 (547)
Q Consensus 48 ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~---~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~ 124 (547)
-+.+++..+|.. ... ..-.....+-++++||+|+... +.+...+.+++.. +..+++++||++|+|++++++
T Consensus 209 ~v~vlsV~eg~d-kpl---Kyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln--p~a~I~~vSA~tGeGld~L~~ 282 (290)
T PRK10463 209 KVAVLSVTEGED-KPL---KYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVN--PEIEIILISATSGEGMDQWLN 282 (290)
T ss_pred eEEEEECccccc-cch---hccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC--CCCcEEEEECCCCCCHHHHHH
Confidence 346667666532 111 1112234567999999999653 3444555555543 346799999999999999999
Q ss_pred HHHhh
Q 008991 125 AVIER 129 (547)
Q Consensus 125 ~l~~~ 129 (547)
+|.+.
T Consensus 283 ~L~~~ 287 (290)
T PRK10463 283 WLETQ 287 (290)
T ss_pred HHHHh
Confidence 99763
No 379
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=95.30 E-value=0.037 Score=58.37 Aligned_cols=111 Identities=11% Similarity=0.120 Sum_probs=62.8
Q ss_pred EEEEEeCCCccchHHHHHH-----HHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC----------
Q 008991 22 LLNLIDTPGHVDFSYEVSR-----SLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP---------- 86 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~-----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~---------- 86 (547)
.+.+||.||..--...... .+...|.+|++.+ ..........+..+..++.|+.+|-+|+|..
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~ 164 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPR 164 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-ST
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCc
Confidence 4789999997432222222 3557897766654 3345556777788888999999999999951
Q ss_pred CCCHHHHHHHHHHhc-------CCCCccceecccccc--ccccccHHHHHhhCCCCC
Q 008991 87 TADPDRVKAQLKSMF-------DLDPSEALLTSAKTG--QGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l-------~~~~~~vi~~SAk~g--~Gv~~Ll~~l~~~ip~p~ 134 (547)
..+.+++++++++.. +....+++.+|+..- .++..|.++|...+|...
T Consensus 165 ~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 165 TFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp T--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 112344455554432 444457889998753 456778999999998754
No 380
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.46 Score=51.79 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=67.9
Q ss_pred eEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccccccccc
Q 008991 142 RMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIG 221 (547)
Q Consensus 142 ~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~G 221 (547)
.+.+-.++..+..|.++-++|.+|.++.|..+...+.+....-.+|..++....++.++.+|+-|.+ ++++..+++.|
T Consensus 415 ~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI--~i~~~~di~~g 492 (509)
T COG0532 415 LAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGI--AIENYRDIKEG 492 (509)
T ss_pred ceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEE--EecCcccCCCC
Confidence 4455566666779999999999999999999999976665544666677777789999999998877 46777899999
Q ss_pred CcccCC
Q 008991 222 DTLYHN 227 (547)
Q Consensus 222 dtl~~~ 227 (547)
|+|...
T Consensus 493 D~le~~ 498 (509)
T COG0532 493 DILEVF 498 (509)
T ss_pred CEEEEE
Confidence 998643
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.20 E-value=0.1 Score=52.98 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=54.6
Q ss_pred CceEEEEEeCCCccchHHHHH----H---HHh-----hcCEEEEEEECCCCCchhhHHHHHHHH-hcCCcEEeeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVS----R---SLA-----ACQGALLVVDAAQGVQAQTVANFYLAF-ESELTIIPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~----~---~l~-----~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~lpiIvviNKiDl 85 (547)
.++.+.||||||......... . ... .+|..+||+|++.+. ++........ ..+ +.-+++||+|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~-~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVG-LTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCC-CCEEEEEccCC
Confidence 457889999999865443322 1 221 289999999997643 2222222221 223 35678999997
Q ss_pred CCCCHHHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 86 PTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
.. ..-..+.- ...+++ |+.+++ +|++++++
T Consensus 230 ~~-~~G~~l~~-~~~~~~---Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 230 TA-KGGIILSI-AYELKL---PIKFIG--VGEKIDDL 259 (272)
T ss_pred CC-CccHHHHH-HHHHCc---CEEEEe--CCCChHhC
Confidence 43 22222222 223443 667777 78877654
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.09 E-value=0.12 Score=53.58 Aligned_cols=95 Identities=22% Similarity=0.240 Sum_probs=55.5
Q ss_pred CceEEEEEeCCCccchH----HHHHHHHh--------hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFS----YEVSRSLA--------ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~----~~~~~~l~--------~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
.++.+.||||||...+. .++....+ ..+..+||+||+.|..... ......+.--+.-+++||+|..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~--~a~~f~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS--QAKAFHEAVGLTGIILTKLDGT 272 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH--HHHHHHhhCCCCEEEEECCCCC
Confidence 55788999999985432 23333322 3678999999997643222 1111111111346889999953
Q ss_pred CCCHHHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 87 TADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
+..-..+.... .+++ |+.+++ +|+++++|
T Consensus 273 -~~~G~~l~~~~-~~~~---Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 273 -AKGGVVFAIAD-ELGI---PIKFIG--VGEGIDDL 301 (318)
T ss_pred -CCccHHHHHHH-HHCC---CEEEEe--CCCChhhC
Confidence 33333333333 3343 777887 88888665
No 383
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.02 E-value=0.18 Score=50.47 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=39.3
Q ss_pred CceEEEEEeCCCccchHH------H----HHHHHh--hcCEEEEEEECCC-CCchhhHHHHHHHHh-cC----CcEEeee
Q 008991 19 SSFLLNLIDTPGHVDFSY------E----VSRSLA--ACQGALLVVDAAQ-GVQAQTVANFYLAFE-SE----LTIIPVI 80 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~------~----~~~~l~--~aD~ailVvDa~~-g~~~qt~~~~~~~~~-~~----lpiIvvi 80 (547)
.+..+++|||||..+... . +.+++. ..|.+++|...+. .........+....+ .+ .++++|+
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~ 156 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVL 156 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEE
Confidence 457899999999987631 1 222332 3566666654432 223333344433322 23 3588999
Q ss_pred ecCCCC
Q 008991 81 NKIDQP 86 (547)
Q Consensus 81 NKiDl~ 86 (547)
||+|..
T Consensus 157 T~~d~~ 162 (249)
T cd01853 157 THAASS 162 (249)
T ss_pred eCCccC
Confidence 999974
No 384
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.87 E-value=0.074 Score=51.94 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=56.1
Q ss_pred CCCeEEEeCC------CceEEEEEeCCCccchHHHHHH-----HHhhcCEEEEEEECCCCCchhhHHHHHHHHh---c--
Q 008991 9 GPGTSEAHNP------SSFLLNLIDTPGHVDFSYEVSR-----SLAACQGALLVVDAAQGVQAQTVANFYLAFE---S-- 72 (547)
Q Consensus 9 ~pG~T~~~~~------~~~~l~liDTPGh~df~~~~~~-----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~-- 72 (547)
.||-|.++.. ++..+|+||+.|+..|.....+ .++..+..+.|+|+.......+..++..+.+ .
T Consensus 35 rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S 114 (295)
T KOG3886|consen 35 RLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS 114 (295)
T ss_pred ccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC
Confidence 3566666543 2357899999999988765544 5778999999999977644444444433222 2
Q ss_pred -CCcEEeeeecCCCCCCCH
Q 008991 73 -ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 73 -~lpiIvviNKiDl~~~~~ 90 (547)
...+++.+.|+|+...+.
T Consensus 115 P~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 115 PEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred CcceEEEEEeechhcccch
Confidence 344889999999976654
No 385
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.59 E-value=0.034 Score=53.01 Aligned_cols=99 Identities=22% Similarity=0.249 Sum_probs=60.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcC-EEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC---CCCHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQ-GALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP---TADPDRVKAQ 96 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD-~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~---~~~~~~~~~~ 96 (547)
..+-||.+.| ...... +..-.| .-|+|+|.++|...--.-.-.+ . .-=++|+||.|+. +++.+...+.
T Consensus 97 ~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i---~-~aDllVInK~DLa~~v~~dlevm~~d 168 (202)
T COG0378 97 LDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGI---F-KADLLVINKTDLAPYVGADLEVMARD 168 (202)
T ss_pred CCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCCce---e-EeeEEEEehHHhHHHhCccHHHHHHH
Confidence 3555677766 111111 111234 7889999999854321100000 0 0137899999994 4566666666
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.++.- +..+++++|+++|+|++++++++...
T Consensus 169 a~~~n--p~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 169 AKEVN--PEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHhC--CCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 55543 34589999999999999999988654
No 386
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.43 E-value=0.083 Score=40.29 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=23.4
Q ss_pred HHHhh-cCEEEEEEECCCCC--chhh-HHHHHHHHh-c-CCcEEeeeecCC
Q 008991 40 RSLAA-CQGALLVVDAAQGV--QAQT-VANFYLAFE-S-ELTIIPVINKID 84 (547)
Q Consensus 40 ~~l~~-aD~ailVvDa~~g~--~~qt-~~~~~~~~~-~-~lpiIvviNKiD 84 (547)
.+++. .+.+++++|.++.. +.+. ...+...+. . +.|+++|+||+|
T Consensus 8 ~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 8 TALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34443 67888999998643 2222 223333333 3 899999999998
No 387
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.40 E-value=0.11 Score=56.10 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=60.9
Q ss_pred chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc--CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCcccee
Q 008991 33 DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES--ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALL 110 (547)
Q Consensus 33 df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~ 110 (547)
++-.+..+.+..+|.+|.+|||.+..-.........+.+. ....++++||.||.. .+....+.+.|...+.++++
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~---~~qr~aWa~YF~~~ni~~vf 239 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLP---PEQRVAWAEYFRQNNIPVVF 239 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCC---HHHHHHHHHHHHhcCceEEE
Confidence 4556677888999999999999998766665555555443 356899999999964 34456777788777788999
Q ss_pred ccccc
Q 008991 111 TSAKT 115 (547)
Q Consensus 111 ~SAk~ 115 (547)
-||..
T Consensus 240 ~SA~~ 244 (562)
T KOG1424|consen 240 FSALA 244 (562)
T ss_pred Eeccc
Confidence 99986
No 388
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.33 E-value=0.12 Score=54.22 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=52.2
Q ss_pred EEeCCCcc-chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-hcC-CcEEeeeecCCCCCCCHHHHHHHHHHhc
Q 008991 25 LIDTPGHV-DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-ESE-LTIIPVINKIDQPTADPDRVKAQLKSMF 101 (547)
Q Consensus 25 liDTPGh~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~-lpiIvviNKiDl~~~~~~~~~~~i~~~l 101 (547)
-.|-+++. .|..+....+..+|.+|-|+||.+.......+.-.... ..| ...|+|+||+|+.. .+..+++...|
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVP---rEv~e~Wl~YL 202 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVP---REVVEKWLVYL 202 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCC---HHHHHHHHHHH
Confidence 34445553 37788889999999999999999987655433333332 233 78999999999954 44556666665
Q ss_pred C
Q 008991 102 D 102 (547)
Q Consensus 102 ~ 102 (547)
.
T Consensus 203 r 203 (435)
T KOG2484|consen 203 R 203 (435)
T ss_pred H
Confidence 4
No 389
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.25 E-value=0.15 Score=46.10 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=49.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc--CCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES--ELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
|.+.++|||+..+ ......+..||.++++++.+......+...+....+. ..++.+++|+++... +.++..+.++
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~-~~~~~~~~~~ 121 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPK-EGKKVFKRLS 121 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHH-HHHHHHHHHH
Confidence 7788999998653 4456789999999999998754433444444444322 356789999997432 2333444443
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.06 E-value=0.19 Score=46.89 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=46.1
Q ss_pred CceEEEEEeCCCccchHH----HHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHH
Q 008991 19 SSFLLNLIDTPGHVDFSY----EVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~----~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
.++.+.++||||...+.. ++..... ..|.+++|+|+..+.... ...+......++ .-+++||+|.... ...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~~-~~viltk~D~~~~-~g~ 157 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALGI-TGVILTKLDGDAR-GGA 157 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCCC-CEEEEECCcCCCC-cch
Confidence 356678999999864333 3322222 389999999996543222 222333333453 5677899997543 233
Q ss_pred HHHHHHHhcCC
Q 008991 93 VKAQLKSMFDL 103 (547)
Q Consensus 93 ~~~~i~~~l~~ 103 (547)
..+ +....++
T Consensus 158 ~~~-~~~~~~~ 167 (173)
T cd03115 158 ALS-IRAVTGK 167 (173)
T ss_pred hhh-hHHHHCc
Confidence 333 4444443
No 391
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=93.89 E-value=0.22 Score=37.30 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=49.0
Q ss_pred EEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCe
Q 008991 359 IIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGY 417 (547)
Q Consensus 359 I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~ 417 (547)
|.+|=...|.|-.+|.+..+.+.+.+|.+ .+.++..+|..+. ..|...|..+|+|.
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~--~V~~~v~v~~~~~-~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTD--DVTLTVAVPEEEV-EEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECT--TEEEEEEEECCCH-HHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecc--eEEEEEEECHHHH-HHHHHHHHHHcCCC
Confidence 45677889999999999999999999964 3999999999998 58999999999995
No 392
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.86 E-value=0.38 Score=49.07 Aligned_cols=70 Identities=26% Similarity=0.372 Sum_probs=44.6
Q ss_pred CCCceEEEEEeCCCccchH-------------H-HHHHHHh-------------hcCEEEEEEECC-CCCchhhHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFS-------------Y-EVSRSLA-------------ACQGALLVVDAA-QGVQAQTVANFYL 68 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~-------------~-~~~~~l~-------------~aD~ailVvDa~-~g~~~qt~~~~~~ 68 (547)
++....++++||||+.|.. . ....++. ..|+|+++++++ .|......+.+..
T Consensus 59 ~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~ 138 (281)
T PF00735_consen 59 NGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKR 138 (281)
T ss_dssp TCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHH
T ss_pred CCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHH
Confidence 4556789999999975411 1 1111121 368899999986 5677777776655
Q ss_pred HHhcCCcEEeeeecCCCCC
Q 008991 69 AFESELTIIPVINKIDQPT 87 (547)
Q Consensus 69 ~~~~~lpiIvviNKiDl~~ 87 (547)
+ ...+++|+|+.|.|...
T Consensus 139 L-s~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 139 L-SKRVNVIPVIAKADTLT 156 (281)
T ss_dssp H-TTTSEEEEEESTGGGS-
T ss_pred h-cccccEEeEEecccccC
Confidence 4 34588999999999865
No 393
>PRK13760 putative RNA-associated protein; Provisional
Probab=93.75 E-value=0.12 Score=50.73 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=55.5
Q ss_pred EEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEE
Q 008991 355 VVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFD 421 (547)
Q Consensus 355 ~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~ 421 (547)
+++.|.+|.+|.|.+.+.|.+ -|.+...++.+++......++|-.-- .+|.+.|.++|+|.|.+.
T Consensus 164 ~~~~v~iP~~~~~~~~~~l~~-~~~i~~eew~~dgs~~~v~~Ip~G~~-~~~~~~~~~~tkG~~~~~ 228 (231)
T PRK13760 164 ARIAVKIPPEYAGKAYGELRK-FGEIKKEEWQSDGSWIAVLEIPAGLQ-NEFYDKLNKLTKGEAETK 228 (231)
T ss_pred EEEEEEECHHHHHHHHHHHHh-hcccchhhccCCCcEEEEEEECCccH-HHHHHHHHHhcCCcEEEE
Confidence 478899999999999999998 88888777766666777889998765 689999999999999765
No 394
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.26 Score=53.62 Aligned_cols=71 Identities=13% Similarity=0.268 Sum_probs=60.0
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCC
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPT 87 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~ 87 (547)
.-+.|+...++|+.|| .|.. .+......||.++|+||+.-|.+-.|.+.+..+..+|.| ++-|++..|+-.
T Consensus 106 TvvsgK~RRiTflEcp--~Dl~-~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 106 TVVSGKTRRITFLECP--SDLH-QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred EEeecceeEEEEEeCh--HHHH-HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 3446778899999999 4544 455566889999999999999999999999999999999 667899999854
No 395
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.64 E-value=0.11 Score=50.89 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=49.2
Q ss_pred CceEEEEEeC-CCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC-CcEEeeeecCCCC
Q 008991 19 SSFLLNLIDT-PGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE-LTIIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDT-PGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~-lpiIvviNKiDl~ 86 (547)
+.+.+.++|| +|.+-|.. +....+|.+|.|+|.+...-....+.-.++.+.+ .++.+|+||+|-.
T Consensus 132 ~~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3467889999 78777763 4456799999999987654334456667778889 6799999999954
No 396
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=93.46 E-value=0.16 Score=52.00 Aligned_cols=102 Identities=26% Similarity=0.292 Sum_probs=70.2
Q ss_pred CceEEEEEeCCCccc---------hHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHHHHHHhcCCc-------EEeeee
Q 008991 19 SSFLLNLIDTPGHVD---------FSYEVSRSLAACQGALLVVDAAQGV-QAQTVANFYLAFESELT-------IIPVIN 81 (547)
Q Consensus 19 ~~~~l~liDTPGh~d---------f~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~lp-------iIvviN 81 (547)
.+..+-+.||-|... |... ..-...+|..+-|+|.+.+. +.|-...+..+...++| +|=|=|
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdn 302 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDN 302 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcc
Confidence 345667899999732 3322 23345699999999999874 45556677777778875 455678
Q ss_pred cCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 82 KIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
|+|......+. .....+++||++|.|.+++++++-.....
T Consensus 303 kiD~e~~~~e~-----------E~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 303 KIDYEEDEVEE-----------EKNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccccccCcc-----------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence 88875543211 11125799999999999999998766543
No 397
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=93.32 E-value=0.3 Score=46.92 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=49.2
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPT 87 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~ 87 (547)
..|.+.|+|||..... .........||.+|+|+++..............+...+.+ +-+|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 3577889999973221 2223345679999999999776666667777777778888 458999999654
No 398
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.31 Score=54.45 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=58.5
Q ss_pred EEEEEeCCCc---cchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCH---HHHH
Q 008991 22 LLNLIDTPGH---VDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADP---DRVK 94 (547)
Q Consensus 22 ~l~liDTPGh---~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~---~~~~ 94 (547)
.+.++|.||. ..+...+......+|.+|+|+.|-....-.....+..+.+ +.| ++++.||+|.....+ +.+.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~-~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE-EKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-cCCcEEEEechhhhhcccHHHHHHHH
Confidence 4679999997 3466777777888999999999866433222334444444 366 777888999865433 3334
Q ss_pred HHHHHhcCCC-----Cccceeccccc
Q 008991 95 AQLKSMFDLD-----PSEALLTSAKT 115 (547)
Q Consensus 95 ~~i~~~l~~~-----~~~vi~~SAk~ 115 (547)
.++.+ ++.. .+-++++||+.
T Consensus 286 ~Qi~e-L~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 286 KQIHE-LSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHh-cCcccHhhhcCeeEEEeccc
Confidence 44332 2211 23488999873
No 399
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=93.05 E-value=0.2 Score=51.09 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=77.1
Q ss_pred eEEEEEeCCCcc-chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC-CCHHHHHHHHH
Q 008991 21 FLLNLIDTPGHV-DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT-ADPDRVKAQLK 98 (547)
Q Consensus 21 ~~l~liDTPGh~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~-~~~~~~~~~i~ 98 (547)
+....-+-|||- .-...+...+...|++|=|=||.-..+......-..+. ..|.|+|.||+||.+ .+...+++.++
T Consensus 22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~k~~iq~~~ 99 (335)
T KOG2485|consen 22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQKKIIQYLE 99 (335)
T ss_pred cCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCchhhhHHHHHHH
Confidence 444566779984 34455666778899999999998877766655444443 678999999999976 34455566665
Q ss_pred HhcCCCCccceeccccccccccccHHHH---HhhCCCCCccccCceeEEEEeeeccccccEEE
Q 008991 99 SMFDLDPSEALLTSAKTGQGLEHVLPAV---IERIPPPRGIINSSLRMLLLDSYYDEYKGVIC 158 (547)
Q Consensus 99 ~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l---~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~ 158 (547)
+. +....-..-|+..+..++..++..+ ...++.--...+....++|..+ |.+|+-+
T Consensus 100 ~~-~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGv---PNVGKSs 158 (335)
T KOG2485|consen 100 WQ-NLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGV---PNVGKSS 158 (335)
T ss_pred hh-cccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcC---CCCChHH
Confidence 54 2222222334444444465554433 3333322222233345555443 5555543
No 400
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.96 E-value=0.25 Score=51.68 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=55.9
Q ss_pred CCCCeEE-EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCch-----------hhHHHHHHHHhc---
Q 008991 8 NGPGTSE-AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQA-----------QTVANFYLAFES--- 72 (547)
Q Consensus 8 ~~pG~T~-~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~-----------qt~~~~~~~~~~--- 72 (547)
+|-|+.. .+.-++..+.++|.+||..-..-|......++++|+|++.++-.+. ++...+......
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 4455443 2333557888999999998888999999999999999998753221 123333333222
Q ss_pred -CCcEEeeeecCCCC
Q 008991 73 -ELTIIPVINKIDQP 86 (547)
Q Consensus 73 -~lpiIvviNKiDl~ 86 (547)
+.++|+++||.|+-
T Consensus 261 ~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLF 275 (354)
T ss_pred ccCcEEEEeecHHHH
Confidence 57899999999983
No 401
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=92.95 E-value=0.89 Score=46.92 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCccchHH---HHHHHHh------hcCEEEEEEECCC-CCchhhHHHHHHHHh-c----CCcEEeeeecC
Q 008991 19 SSFLLNLIDTPGHVDFSY---EVSRSLA------ACQGALLVVDAAQ-GVQAQTVANFYLAFE-S----ELTIIPVINKI 83 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~---~~~~~l~------~aD~ailVvDa~~-g~~~qt~~~~~~~~~-~----~lpiIvviNKi 83 (547)
.+..+++|||||..+... +....++ ..|++++|...+. .........+..... . -.+.|+++|+.
T Consensus 84 ~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~ 163 (313)
T TIGR00991 84 AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA 163 (313)
T ss_pred CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECC
Confidence 467899999999987532 2222222 4788888854332 233233333333222 1 24589999999
Q ss_pred CCC
Q 008991 84 DQP 86 (547)
Q Consensus 84 Dl~ 86 (547)
|..
T Consensus 164 d~~ 166 (313)
T TIGR00991 164 QFS 166 (313)
T ss_pred ccC
Confidence 964
No 402
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.72 E-value=0.43 Score=44.43 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=49.4
Q ss_pred CceEEEEEeCCCccchHHHHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSL--AACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl 85 (547)
.+|.+-++|||+... ......+ ..+|.+++|+.+.......+...+..+.+.+.++ -+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 468889999998753 2333333 5899999999887766667778888888888885 578999985
No 403
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=92.66 E-value=0.59 Score=46.12 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=53.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~~~~~~i 97 (547)
+.|.+.++|||+..+ ......+..||.+++++++.......+......+...+++ ..+++|+.|..... ...+++
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 357889999998765 3566678899999999998654444444555555666777 46899999863221 123445
Q ss_pred HHhcCC
Q 008991 98 KSMFDL 103 (547)
Q Consensus 98 ~~~l~~ 103 (547)
++.++.
T Consensus 183 ~~~~~~ 188 (251)
T TIGR01969 183 ETILEV 188 (251)
T ss_pred HHhhCC
Confidence 554443
No 404
>PRK14974 cell division protein FtsY; Provisional
Probab=92.64 E-value=0.45 Score=49.77 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=54.6
Q ss_pred ceEEEEEeCCCccc----hHHHHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHH-HhcCCcEEeeeecCCCCCCCHHH
Q 008991 20 SFLLNLIDTPGHVD----FSYEVSRSL--AACQGALLVVDAAQGVQAQTVANFYLA-FESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 20 ~~~l~liDTPGh~d----f~~~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~-~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
++.+.||||||... +..++.... ...|..+||+|++.|-. .......- ...++ --+++||+|... ..-.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~a~~f~~~~~~-~giIlTKlD~~~-~~G~ 297 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQAREFNEAVGI-DGVILTKVDADA-KGGA 297 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHHHHHHHhcCCC-CEEEEeeecCCC-CccH
Confidence 45688999999864 333333332 24789999999987632 22222111 12233 467899999743 2222
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccH
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVL 123 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll 123 (547)
.+..... .+ .|+.+++ +|++++++.
T Consensus 298 ~ls~~~~-~~---~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 298 ALSIAYV-IG---KPILFLG--VGQGYDDLI 322 (336)
T ss_pred HHHHHHH-HC---cCEEEEe--CCCChhhcc
Confidence 3332222 33 3777777 788887653
No 405
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=92.56 E-value=0.21 Score=50.76 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=27.7
Q ss_pred EEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCC
Q 008991 22 LLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQ 56 (547)
Q Consensus 22 ~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~ 56 (547)
.+.++||||..+ ........++.||++++|||+..
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 589999999653 34456667889999999999864
No 406
>PHA02518 ParA-like protein; Provisional
Probab=92.49 E-value=0.57 Score=44.89 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=42.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH---HHHHHHHh--cCCcE-EeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV---ANFYLAFE--SELTI-IPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~---~~~~~~~~--~~lpi-IvviNKiDl~ 86 (547)
..|.+.||||||.. ......++..||.+|+++..+.-.-.... ..+..... .+.|. .++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 45788999999974 45577899999999999987653322222 22222221 24554 4666776643
No 407
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.17 E-value=0.39 Score=51.81 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=40.6
Q ss_pred ceEEEEEeCCCccchHH----HHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC
Q 008991 20 SFLLNLIDTPGHVDFSY----EVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~----~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
++.+.||||||...... ++..... .+|-++||+||+.|-.+.. ......+.--+.-+++||+|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~--~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA--QAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH--HHHHHHhccCCcEEEEECccCC
Confidence 57889999999865433 3333322 3678999999987744422 1111111112467889999974
No 408
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=91.79 E-value=0.68 Score=45.80 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=45.3
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH------hcCCcEEeeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF------ESELTIIPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~------~~~lpiIvviNKiDl 85 (547)
+.|.+.||||||+.. ..+..++..||.+|+.+..+.-.-..+...+.... ..++|..+++|.++.
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~~ 152 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeccc
Confidence 458889999999875 55677899999999888775433333333332222 236788899999873
No 409
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.34 E-value=0.71 Score=46.38 Aligned_cols=65 Identities=20% Similarity=0.087 Sum_probs=51.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT 87 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~ 87 (547)
..+.+||||--. .-.+..++..+|.||+|--.+----...+..+..+..+++|..+|+||.++-.
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 578899997543 24678899999999999776654444557788888899999999999996543
No 410
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.12 E-value=0.42 Score=43.88 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=38.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKID 84 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiD 84 (547)
.++.+.||||||.. ......+..||-+++|.....+........ .....-=++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~----~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA----GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh----hHhhhcCEEEEeCCC
Confidence 36788999999964 333458899999999987752221111111 112233588999998
No 411
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=90.98 E-value=0.7 Score=39.70 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=42.1
Q ss_pred EEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCC----cEEeeeec
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESEL----TIIPVINK 82 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l----piIvviNK 82 (547)
.+.++|||+..+. .....+..||.++++++.+......+...+..+.+.+. ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5689999997654 45568899999999998876555555555555555543 36678875
No 412
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=90.75 E-value=0.67 Score=45.97 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=45.8
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCC-cEEeeeecCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESEL-TIIPVINKIDQ 85 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l-piIvviNKiDl 85 (547)
.|.+.|+|||+..+. ....++..+|.+++++.+....-..+...+..+...+. +..+++|+++.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 478889999987543 45567889999999998865444444555555555554 57789999985
No 413
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=90.74 E-value=1.2 Score=43.10 Aligned_cols=69 Identities=7% Similarity=0.032 Sum_probs=61.2
Q ss_pred eecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEE
Q 008991 350 CWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFD 421 (547)
Q Consensus 350 llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~ 421 (547)
-..|+..+++.+|=...|.+...+.+..+++.+.+|.+ .+.++..+|..+. ..|...|..+|+|...+.
T Consensus 132 ~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~~y~~--~V~~~~~v~~~~~-~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 132 EKLELEILSLHCDYKQLDALERELKKFQLEIIKSNFSN--NVVLVEISGTKEN-LAFSEQLTEISLGQLILK 200 (204)
T ss_pred EEEEEEEEEEEechhHHHHHHHHHHHCCCEEEeeEecC--CEEEEEEECHHHH-HHHHHHHHHHhCCeEEEE
Confidence 35677888999999999999999999999999999853 5999999999997 589999999999998764
No 414
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=90.60 E-value=0.91 Score=44.13 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=58.7
Q ss_pred CceEEEEEeCCCccc-------hHHHHHHHHh----hcCEEEEEEECCCCCchhhHHHHHHHHh-cCC----cEEeeeec
Q 008991 19 SSFLLNLIDTPGHVD-------FSYEVSRSLA----ACQGALLVVDAAQGVQAQTVANFYLAFE-SEL----TIIPVINK 82 (547)
Q Consensus 19 ~~~~l~liDTPGh~d-------f~~~~~~~l~----~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~l----piIvviNK 82 (547)
.+..+++|||||..| ...++.+++. ..++++||+... .........+..... .+- -+|++++.
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~ 125 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTH 125 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEE
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhh
Confidence 457899999999755 2233444333 478999999988 666666665554433 232 27888888
Q ss_pred CCCCCC-CHHHHHH-----HHHHhcCCCCccceecccc------ccccccccHHHHHhh
Q 008991 83 IDQPTA-DPDRVKA-----QLKSMFDLDPSEALLTSAK------TGQGLEHVLPAVIER 129 (547)
Q Consensus 83 iDl~~~-~~~~~~~-----~i~~~l~~~~~~vi~~SAk------~g~Gv~~Ll~~l~~~ 129 (547)
.|.... +.++.++ .+.+.+......++..+.+ ....+.+||+.+-+.
T Consensus 126 ~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~m 184 (212)
T PF04548_consen 126 ADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEM 184 (212)
T ss_dssp GGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHH
Confidence 876443 3322222 2333332111234444444 234566777766543
No 415
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=90.50 E-value=2 Score=44.94 Aligned_cols=92 Identities=22% Similarity=0.343 Sum_probs=57.5
Q ss_pred CCCceEEEEEeCCCccchHHH--------------HHHHHh--------------hcCEEEEEEECC-CCCchhhHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYE--------------VSRSLA--------------ACQGALLVVDAA-QGVQAQTVANFY 67 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~--------------~~~~l~--------------~aD~ailVvDa~-~g~~~qt~~~~~ 67 (547)
++-...+++|||||.-||... ...++. ..++|++.+-.+ +|+.....+.+.
T Consensus 78 ~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk 157 (373)
T COG5019 78 DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMK 157 (373)
T ss_pred CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHH
Confidence 455678899999999774321 112221 267899988864 678888877765
Q ss_pred HHHhcCCcEEeeeecCCCCCCCH-HHHHHHHHHhcCCCCccce
Q 008991 68 LAFESELTIIPVINKIDQPTADP-DRVKAQLKSMFDLDPSEAL 109 (547)
Q Consensus 68 ~~~~~~lpiIvviNKiDl~~~~~-~~~~~~i~~~l~~~~~~vi 109 (547)
.+. ..+-+|+|+-|.|....+. ....+.+.+.+...+.+++
T Consensus 158 ~ls-~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 158 RLS-KRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred HHh-cccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 543 3466899999999865432 3334444444433333444
No 416
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.48 E-value=0.52 Score=49.98 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=44.0
Q ss_pred CceEEEEEeCCCcc---chHHHHHHHHhhc---CEEEEEEECCCCCchhhHHHHHHHHhcCCc-------EEeeeecCCC
Q 008991 19 SSFLLNLIDTPGHV---DFSYEVSRSLAAC---QGALLVVDAAQGVQAQTVANFYLAFESELT-------IIPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~---df~~~~~~~l~~a---D~ailVvDa~~g~~~qt~~~~~~~~~~~lp-------iIvviNKiDl 85 (547)
.++.+.||||||.. ++..+....+..+ +-.+||++++.+....+...+......++| -=++++|+|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 34678899999986 3444444445443 445999999988766555445444443332 2467899996
Q ss_pred CC
Q 008991 86 PT 87 (547)
Q Consensus 86 ~~ 87 (547)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 43
No 417
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.44 E-value=1 Score=44.37 Aligned_cols=80 Identities=25% Similarity=0.173 Sum_probs=49.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHH-HHHh--cCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFY-LAFE--SELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~-~~~~--~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+.+.++|||+. +......++..||.+++++....- ...... .+. .... ...+.-+++|+.|.......+..+.
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~ 191 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAA-CYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAV 191 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHH-HHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHH
Confidence 36789999995 345667888999999999987532 212221 222 2221 2345678999999654334445566
Q ss_pred HHHhcCC
Q 008991 97 LKSMFDL 103 (547)
Q Consensus 97 i~~~l~~ 103 (547)
+++.++.
T Consensus 192 ~~~~~~~ 198 (246)
T TIGR03371 192 LRQTLGS 198 (246)
T ss_pred HHHHhcc
Confidence 6666654
No 418
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=90.21 E-value=0.23 Score=53.06 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCCeEEE-eCC-CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCc-----------hhhHHHHHHHHh----
Q 008991 9 GPGTSEA-HNP-SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQ-----------AQTVANFYLAFE---- 71 (547)
Q Consensus 9 ~pG~T~~-~~~-~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~-----------~qt~~~~~~~~~---- 71 (547)
+-|++.. +.- ....+.++|+.|+..-...|...+..++++|+|++.++-.+ .+++..|.....
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 4454432 232 66889999999999888899999999999999999764221 122444444332
Q ss_pred cCCcEEeeeecCCC
Q 008991 72 SELTIIPVINKIDQ 85 (547)
Q Consensus 72 ~~lpiIvviNKiDl 85 (547)
.+.|+|+++||+|+
T Consensus 302 ~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 302 KNTPIILFLNKIDL 315 (389)
T ss_dssp TTSEEEEEEE-HHH
T ss_pred ccCceEEeeecHHH
Confidence 36899999999996
No 419
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=3.3 Score=43.54 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=49.6
Q ss_pred CCCceEEEEEeCCCccchHH--------------HHHHHHh-------------hcCEEEEEEECC-CCCchhhHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSY--------------EVSRSLA-------------ACQGALLVVDAA-QGVQAQTVANFYL 68 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~--------------~~~~~l~-------------~aD~ailVvDa~-~g~~~qt~~~~~~ 68 (547)
+|-...++++||||..|+.. ....++. ..++|++.+..+ .|..+...+....
T Consensus 75 ~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~ 154 (366)
T KOG2655|consen 75 NGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKK 154 (366)
T ss_pred CCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHH
Confidence 34556788999999977332 1122221 378899999865 5677777776654
Q ss_pred HHhcCCcEEeeeecCCCCCCC
Q 008991 69 AFESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 69 ~~~~~lpiIvviNKiDl~~~~ 89 (547)
. ...+.+|+|+-|.|....+
T Consensus 155 l-~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 155 L-SKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred H-hccccccceeeccccCCHH
Confidence 4 3467899999999986653
No 420
>CHL00175 minD septum-site determining protein; Validated
Probab=90.11 E-value=0.85 Score=46.20 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=52.1
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCH--HHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADP--DRVKAQ 96 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~--~~~~~~ 96 (547)
.|.+.|+|||+... .....++..+|.+++|++.....-..+...+..+.+.+.+ +-+++|+++....+. ....++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 57889999998754 4556778889999999887654333444455555555543 678899998532111 012345
Q ss_pred HHHhcCC
Q 008991 97 LKSMFDL 103 (547)
Q Consensus 97 i~~~l~~ 103 (547)
+++.++.
T Consensus 204 l~~~~~~ 210 (281)
T CHL00175 204 VQEMLGI 210 (281)
T ss_pred HHHHhCC
Confidence 5555554
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.35 E-value=1.4 Score=47.61 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=48.8
Q ss_pred CceEEEEEeCCCccchHHHHHHH------HhhcCEEEEEEECCCCCchhhHHHHHHHH-hcCCcEEeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRS------LAACQGALLVVDAAQGVQAQTVANFYLAF-ESELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~------l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~lpiIvviNKiDl~~~~~~ 91 (547)
+++.+.|+||||........... ....|.++||+|+..+- .......... ..++ .=+++||+|-.. ..-
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f~~~v~i-~giIlTKlD~~~-~~G 256 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTFNERLGL-TGVVLTKLDGDA-RGG 256 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHHHhhCCC-CEEEEeCccCcc-ccc
Confidence 45778999999965433322222 22478999999997542 2222222111 1233 346699999532 111
Q ss_pred HHHHHHHHhcCCCCccceeccccccccccc
Q 008991 92 RVKAQLKSMFDLDPSEALLTSAKTGQGLEH 121 (547)
Q Consensus 92 ~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~ 121 (547)
....+...+++ |+.+++. |+.+++
T Consensus 257 -~~lsi~~~~~~---PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 257 -AALSVRSVTGK---PIKFIGV--GEKIDD 280 (428)
T ss_pred -HHHHHHHHHCc---CEEEEeC--CCChhh
Confidence 13344444554 4555433 444433
No 422
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.98 E-value=0.96 Score=43.57 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=51.9
Q ss_pred CceEEEEEeCCCccchHH----HHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHH
Q 008991 19 SSFLLNLIDTPGHVDFSY----EVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~----~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~ 92 (547)
+++.+.||||||...... ++...+. ..+-++||+|++.+.+... .........++. =++++|+|-.. ..-.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet~-~~G~ 158 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDETA-RLGA 158 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSSS-TTHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCCC-Cccc
Confidence 346788999999765443 3333222 4678999999987643322 333333344554 34599999744 3333
Q ss_pred HHHHHHHhcCCCCccceecccccccccccc
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
...-+.+ .++ |+-++| +|.+|+++
T Consensus 159 ~l~~~~~-~~~---Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 159 LLSLAYE-SGL---PISYIT--TGQRVDDL 182 (196)
T ss_dssp HHHHHHH-HTS---EEEEEE--SSSSTTGE
T ss_pred ceeHHHH-hCC---CeEEEE--CCCChhcC
Confidence 3333332 333 333333 45566443
No 423
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=88.78 E-value=0.87 Score=42.16 Aligned_cols=63 Identities=21% Similarity=0.085 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCccchHHHH--------HHHHhhcCEEEEEEECCCCCchh-h-HHHHHHHHhcCCcEEeeeecCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEV--------SRSLAACQGALLVVDAAQGVQAQ-T-VANFYLAFESELTIIPVINKIDQ 85 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~--------~~~l~~aD~ailVvDa~~g~~~q-t-~~~~~~~~~~~lpiIvviNKiDl 85 (547)
....-++||||..+-.... ......+|.++.++|+....... + .....+.... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4566899999997533322 22344589999999987543211 1 1111222222 3679999996
No 424
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=88.48 E-value=3 Score=41.27 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=53.5
Q ss_pred CCCceEEEEEeCCCccchHH--------------HHHHHHh--------------hcCEEEEEEECCCC-CchhhHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSY--------------EVSRSLA--------------ACQGALLVVDAAQG-VQAQTVANFY 67 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~--------------~~~~~l~--------------~aD~ailVvDa~~g-~~~qt~~~~~ 67 (547)
++-..++++|||||.-|++. +-+.+|+ ..+++++.+.++-. ..+-+.+.+.
T Consensus 100 ~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflk 179 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLK 179 (336)
T ss_pred cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHH
Confidence 44556789999999977432 1222222 26788888887632 3444555554
Q ss_pred HHHhcCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCcccee
Q 008991 68 LAFESELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALL 110 (547)
Q Consensus 68 ~~~~~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~ 110 (547)
.+.+ -+.+|+|+-|.|...-+ .....+.+++.|...+.++++
T Consensus 180 rLt~-vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 180 RLTE-VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred HHhh-hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCccccc
Confidence 3322 24589999999975432 233445555555333334443
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=88.35 E-value=1.9 Score=46.64 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=48.4
Q ss_pred CceEEEEEeCCCccchHH----HHHHH--HhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSY----EVSRS--LAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~----~~~~~--l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~ 91 (547)
.++.+.|+||||...... ++... ....+.+++|+|+..| |............++ .-+++||+|-.. ..-
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~~i~giIlTKlD~~~-rgG 257 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEALGLTGVILTKLDGDA-RGG 257 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhCCCCEEEEeCccCcc-ccc
Confidence 457789999999653322 22222 2247888999999754 222111111112343 356779999532 221
Q ss_pred HHHHHHHHhcCCCCccceeccccccccccc
Q 008991 92 RVKAQLKSMFDLDPSEALLTSAKTGQGLEH 121 (547)
Q Consensus 92 ~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~ 121 (547)
. .-.+...+++ |+.+++. |+++++
T Consensus 258 ~-alsi~~~~~~---PI~fig~--Ge~v~D 281 (433)
T PRK10867 258 A-ALSIRAVTGK---PIKFIGT--GEKLDD 281 (433)
T ss_pred H-HHHHHHHHCc---CEEEEeC--CCcccc
Confidence 1 2334444554 4555443 555544
No 426
>PRK11568 hypothetical protein; Provisional
Probab=88.18 E-value=2.6 Score=40.90 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=60.9
Q ss_pred eecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEE
Q 008991 350 CWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFD 421 (547)
Q Consensus 350 llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~ 421 (547)
-..|...++|.+|=...|.++..|.+..+++.+.+|.+ .+.++..+|..+. ..|...|..+|+|...+.
T Consensus 132 ~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~~y~~--~V~~~~~v~~~~~-~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 132 RKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNSEYQA--FVTLRVALPAAKV-AEFSAKLADFSRGSLQLL 200 (204)
T ss_pred EEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcceecC--CEEEEEEECHHHH-HHHHHHHHHHhCCeEEEE
Confidence 35677788999999999999999999999999999843 5899999999987 489999999999998765
No 427
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=88.04 E-value=1.6 Score=45.22 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=50.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
..|.+.+||||+..+ ......+..||.+++|++.+-..-..+...+..+...+..+-+++|........ .++++
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~~~~~----~~~i~ 276 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAPAGLD----PEEIA 276 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCC----HHHHH
Confidence 357889999998865 346778999999999997754333333444555555554455667865433223 24566
Q ss_pred HhcCC
Q 008991 99 SMFDL 103 (547)
Q Consensus 99 ~~l~~ 103 (547)
+.++.
T Consensus 277 ~~lg~ 281 (322)
T TIGR03815 277 ESLGL 281 (322)
T ss_pred HHhCC
Confidence 66665
No 428
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=87.73 E-value=1 Score=44.77 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.3
Q ss_pred CceEEEEEeCCCccchH-------HHHHHHHhhcCEEEEEEECCCC
Q 008991 19 SSFLLNLIDTPGHVDFS-------YEVSRSLAACQGALLVVDAAQG 57 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~-------~~~~~~l~~aD~ailVvDa~~g 57 (547)
++-.++++|.||...=. .++....+.||.+++|+||+..
T Consensus 107 ~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 107 NGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 45678899999986532 2344556779999999999875
No 429
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=87.15 E-value=1.1 Score=44.30 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=51.4
Q ss_pred EEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEE
Q 008991 355 VVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYAS 419 (547)
Q Consensus 355 ~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as 419 (547)
|++.|.+|.+|.|.+++.|.+... +...++.+++.....+.+|-.-- .+|.+.|.+.|+|.+.
T Consensus 164 m~i~v~ip~~~~~~~~~~l~~~~~-i~~eew~~dgs~~~v~~I~pg~~-~~~~~~l~~~tkG~~~ 226 (231)
T TIGR00291 164 MKVAIKIPPERAGEAIEAISNFGA-VTPEEWQEDGSWICVGEIPSGNY-RDLMTLLDKKTKGNVL 226 (231)
T ss_pred EEEEEEeCHHHHHHHHHHHHHhcc-cchhhccCCCcEEEEEEECCccH-HHHHHHHHhhcCCeeE
Confidence 578899999999999999987744 66666655556677788998765 6899999999999884
No 430
>PRK10818 cell division inhibitor MinD; Provisional
Probab=86.28 E-value=1.9 Score=43.30 Aligned_cols=65 Identities=8% Similarity=0.109 Sum_probs=43.1
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh-------c--CCcEEeeeecCCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE-------S--ELTIIPVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-------~--~lpiIvviNKiDl~ 86 (547)
.|.+.++|||+.... .....+..+|.+++++++....-..+...+..... . +++..+++|++|..
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 588899999988753 45567899999999998875433233333333321 1 23357889999853
No 431
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=86.11 E-value=2.7 Score=42.12 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=40.3
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHH---HHHH-HhcCCcE-EeeeecCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVAN---FYLA-FESELTI-IPVINKIDQ 85 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~---~~~~-~~~~lpi-IvviNKiDl 85 (547)
.|.+.||||||..... .+..++..||.+++++.++...-..+... +... ...++++ .+|+|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5788999999875322 23345889999999988754322222222 2222 2346664 478999984
No 432
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.02 E-value=2.1 Score=42.33 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=47.6
Q ss_pred ceEEEEEeCCCccchHH---HHHHHHhhcCEEEEEEECCCCC-chhhHHHHHHHHhc----CCcEEeeeecCCCCCCC
Q 008991 20 SFLLNLIDTPGHVDFSY---EVSRSLAACQGALLVVDAAQGV-QAQTVANFYLAFES----ELTIIPVINKIDQPTAD 89 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~---~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~----~lpiIvviNKiDl~~~~ 89 (547)
=..+.+||-||+.+|-. .-....+.+.+.++|+||.+.- .+-+.-+...++.. ++.+=+++.|+|-...+
T Consensus 74 finf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 74 FINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 35688999999987432 3345678899999999997643 33333344444433 46678999999965543
No 433
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=85.91 E-value=2 Score=46.59 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=39.5
Q ss_pred eEEEEEeCCCccchHHHH----H--HHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCC
Q 008991 21 FLLNLIDTPGHVDFSYEV----S--RSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQP 86 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~----~--~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~ 86 (547)
+.+.||||||........ . ..+..+|.+++|+|++.|. +....... ....++ .-+++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~-F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKA-FHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHH-HHhcCCCCEEEEecccCC
Confidence 477899999976654432 2 3345689999999998862 22222221 112344 35778999963
No 434
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=85.61 E-value=2.5 Score=42.64 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=45.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeec
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINK 82 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNK 82 (547)
+.|.+.|+|||--.. ..........||++|+|+.+...-.....+....+...+.+++ +|+|+
T Consensus 211 ~~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 211 GDYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred hcCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 457889999997543 2345556678999999999877655566667777777788854 66774
No 435
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=85.52 E-value=0.93 Score=42.64 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=47.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC--C-cEEeeeecCCCCC
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE--L-TIIPVINKIDQPT 87 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~--l-piIvviNKiDl~~ 87 (547)
|.+.++|||+..... +...+..+|.+|++++.+.-.-..+......+...+ . ..-+|+||.+...
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 788999999976654 677889999999999986533333344555555555 3 3578999998753
No 436
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=85.07 E-value=2.5 Score=42.41 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=39.3
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH----HhcCCcE-EeeeecCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA----FESELTI-IPVINKID 84 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~----~~~~lpi-IvviNKiD 84 (547)
++|.+.||||||...... +...+..||.+|+++.+..-.-......+... ...++++ -+++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 358899999998753222 34457899999999876432111112222221 2346664 47899977
No 437
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=84.47 E-value=2 Score=41.52 Aligned_cols=82 Identities=7% Similarity=-0.076 Sum_probs=47.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHHHhc----CCc-EEeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSL--AACQGALLVVDAAQGVQAQTVANFYLAFES----ELT-IIPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~----~lp-iIvviNKiDl~~~~~~ 91 (547)
++|.+.+|||||....... ...+ ..||.++++++.+.-........+....+. +++ ..++.|++|.. ...
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~ 191 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET 191 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence 4688999999986532111 1123 389999999977432111122233333322 444 45899999964 233
Q ss_pred HHHHHHHHhcCC
Q 008991 92 RVKAQLKSMFDL 103 (547)
Q Consensus 92 ~~~~~i~~~l~~ 103 (547)
...+++.+.++.
T Consensus 192 ~~~~~~~~~~~~ 203 (212)
T cd02117 192 ELIDAFAERLGT 203 (212)
T ss_pred HHHHHHHHHcCC
Confidence 445666666654
No 438
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=84.24 E-value=3.5 Score=46.58 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=50.9
Q ss_pred ccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccc---ccccccCcccCC
Q 008991 154 KGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRST---KEARIGDTLYHN 227 (547)
Q Consensus 154 ~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~---~~~~~Gdtl~~~ 227 (547)
.+.|+-++|.+|+|++|..|. .+.+. .+..|..+.....+++++..|+=|.|. +.+. .+++.||+|.+.
T Consensus 479 ~~~i~G~~V~~G~i~~~~~v~-r~~~~--~iG~i~slk~~k~~V~ev~~G~Ecgi~--i~~~~~g~~~~~gD~l~~~ 550 (590)
T TIGR00491 479 KPAIVGVEVLTGVIRQGYPLM-KDDGE--TVGTVRSMQDKGENVKSASAGQEVAIA--IKDVVYGRTIHEGDTLYVD 550 (590)
T ss_pred CCeEEEEEEecCEEecCCeEE-ecCCE--EEEEEchhcccCccccEECCCCEEEEE--EeCccccCCCCCCCEEEEe
Confidence 479999999999999999863 22232 345566666566789999999987774 4454 578889988654
No 439
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=83.96 E-value=2.7 Score=35.37 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=27.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG 57 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g 57 (547)
+.+.++|||+..+. .....+..||.++++++++..
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHH
Confidence 67889999997643 344788999999999988654
No 440
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=83.90 E-value=3.1 Score=44.80 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=52.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-------HHHHhc--CC--cE-EeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-------YLAFES--EL--TI-IPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-------~~~~~~--~l--pi-IvviNKiDl~ 86 (547)
++|.+.|||||+...+ .+..++.+||.+|+.+.+..-.-......+ ....+. ++ .. -+++|+.|..
T Consensus 250 ~~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 250 DDYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred ccCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 4588899999998754 677899999999999876432211122222 222222 22 23 3789999965
Q ss_pred CCCHHHHHHHHHHhcC
Q 008991 87 TADPDRVKAQLKSMFD 102 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~ 102 (547)
........+.+.+.++
T Consensus 328 ~~~~~~~~~~l~~~~~ 343 (405)
T PRK13869 328 DAPQTKVAALLRNMFE 343 (405)
T ss_pred CcHHHHHHHHHHHHhh
Confidence 4444556667776664
No 441
>PRK11670 antiporter inner membrane protein; Provisional
Probab=82.99 E-value=2.7 Score=44.59 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=44.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl 85 (547)
+.|.+-+||||............+..+|++++|.....-...............++|++ +|.|+.|.
T Consensus 214 ~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 214 PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMH 281 (369)
T ss_pred ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence 45788999998654333334445667999999986644333344555566666788864 78899875
No 442
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=82.33 E-value=8 Score=43.97 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=45.0
Q ss_pred CCCeEEEeC----CCceEEEEEeCCCccchH------HHH----HHHHh--hcCEEEEEEECCCCCc-hhhHHHHHHHHh
Q 008991 9 GPGTSEAHN----PSSFLLNLIDTPGHVDFS------YEV----SRSLA--ACQGALLVVDAAQGVQ-AQTVANFYLAFE 71 (547)
Q Consensus 9 ~pG~T~~~~----~~~~~l~liDTPGh~df~------~~~----~~~l~--~aD~ailVvDa~~g~~-~qt~~~~~~~~~ 71 (547)
.++||+... ..+..+++|||||..+.. .++ ...++ .+|++|+|......-. .+....+....+
T Consensus 150 ~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~ 229 (763)
T TIGR00993 150 GMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITD 229 (763)
T ss_pred CCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHH
Confidence 467777431 235689999999998642 222 23334 3788888876542211 122333333322
Q ss_pred -cC----CcEEeeeecCCCCC
Q 008991 72 -SE----LTIIPVINKIDQPT 87 (547)
Q Consensus 72 -~~----lpiIvviNKiDl~~ 87 (547)
.| --.|+|++..|...
T Consensus 230 lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 230 VLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhCHHhHcCEEEEEeCCccCC
Confidence 23 22889999999753
No 443
>PRK04004 translation initiation factor IF-2; Validated
Probab=82.03 E-value=4.6 Score=45.60 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=52.5
Q ss_pred eeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccc---ccccccCcc
Q 008991 148 SYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRST---KEARIGDTL 224 (547)
Q Consensus 148 ~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~---~~~~~Gdtl 224 (547)
+|..+ .+.|+-++|.+|+|+.|..|.- +.|. .+..|..+.....+++++.+|+-|.+. +.+. .+++.||+|
T Consensus 476 vf~~~-~~~IaGc~V~~G~i~~~~~v~r-~~g~--~iG~i~Slk~~k~~V~ev~~G~Ecgi~--i~~~~~g~~~~~gD~i 549 (586)
T PRK04004 476 VFRQS-DPAIVGVEVLGGTIKPGVPLIK-EDGK--RVGTIKQIQDQGENVKEAKAGMEVAIS--IDGPTVGRQIKEGDIL 549 (586)
T ss_pred eEecC-CCeEEEEEEEeCEEecCCEEEE-ECCE--EEEEEehhhccCCcccEeCCCCEEEEE--EecccccCCCCCCCEE
Confidence 44333 3799999999999999997532 1442 345666666666789999999977774 4555 678888887
Q ss_pred cC
Q 008991 225 YH 226 (547)
Q Consensus 225 ~~ 226 (547)
..
T Consensus 550 ~~ 551 (586)
T PRK04004 550 YV 551 (586)
T ss_pred EE
Confidence 54
No 444
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=81.93 E-value=4.5 Score=43.15 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=51.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-------HHHHHHhcC----Cc-EEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-------NFYLAFESE----LT-IIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-------~~~~~~~~~----lp-iIvviNKiDl~ 86 (547)
..|.+.|||||+..+. .+..++.+||.+|+.+.+..-.-..+.. .+..+.+.+ +. +-+++|+.|..
T Consensus 233 ~~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 233 DDYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred hcCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 3578899999997654 5778999999999998764321111111 122222222 22 34789999965
Q ss_pred CCCHHHHHHHHHHhcC
Q 008991 87 TADPDRVKAQLKSMFD 102 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~ 102 (547)
........+.+++.++
T Consensus 311 ~~~~~~~~~~l~~~~~ 326 (387)
T TIGR03453 311 DGPQAQMVAFLRSLFG 326 (387)
T ss_pred CccHHHHHHHHHHHhc
Confidence 4445566667777665
No 445
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=81.89 E-value=6.2 Score=38.40 Aligned_cols=67 Identities=13% Similarity=-0.054 Sum_probs=49.6
Q ss_pred eEEEEEeCCCccchHH-HHHHHHhh--cCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCC
Q 008991 21 FLLNLIDTPGHVDFSY-EVSRSLAA--CQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPT 87 (547)
Q Consensus 21 ~~l~liDTPGh~df~~-~~~~~l~~--aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~ 87 (547)
|.+.++|||....... .+...+.. +|.+++|+........++...+..+...+.+ .-+|+|++....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~ 184 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAE 184 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc
Confidence 8889999997533322 23333433 5899999999877777788888888888887 568899998653
No 446
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=81.79 E-value=6.1 Score=41.82 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc--CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccc
Q 008991 36 YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES--ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSA 113 (547)
Q Consensus 36 ~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SA 113 (547)
.+....+..+|.+|-|+||.+.....-..+-..+++. ..-+|.|+||+||..... +...+..+-.-.+.-.+..|-
T Consensus 205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwv--t~~Wv~~lSkeyPTiAfHAsi 282 (572)
T KOG2423|consen 205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWV--TAKWVRHLSKEYPTIAFHASI 282 (572)
T ss_pred HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHH--HHHHHHHHhhhCcceeeehhh
Confidence 3555667789999999999987654443333344332 233899999999965332 122222221112223456665
Q ss_pred cccccccccHHHHHhh
Q 008991 114 KTGQGLEHVLPAVIER 129 (547)
Q Consensus 114 k~g~Gv~~Ll~~l~~~ 129 (547)
-+..|--.|+..|.+.
T Consensus 283 ~nsfGKgalI~llRQf 298 (572)
T KOG2423|consen 283 NNSFGKGALIQLLRQF 298 (572)
T ss_pred cCccchhHHHHHHHHH
Confidence 5566666666655443
No 447
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=80.40 E-value=0.68 Score=48.98 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCCCeEEEeCCCce--EEEEEeCCCccchHHHHHHHHh-----------hcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHNPSSF--LLNLIDTPGHVDFSYEVSRSLA-----------ACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~~~~~--~l~liDTPGh~df~~~~~~~l~-----------~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
|+.||||++...-.. .+.++||||..... .+...+. ......+.+|..+.........+......+
T Consensus 188 s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~-~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~ 266 (360)
T TIGR03597 188 SPFPGTTLDLIEIPLDDGHSLYDTPGIINSH-QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEK 266 (360)
T ss_pred cCCCCeEeeEEEEEeCCCCEEEECCCCCChh-HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCc
Confidence 789999998743221 34699999986532 2222221 234555666655443332222222222234
Q ss_pred CcEEeeeecCCCCCC-CHHHHHHHHHHhcC
Q 008991 74 LTIIPVINKIDQPTA-DPDRVKAQLKSMFD 102 (547)
Q Consensus 74 lpiIvviNKiDl~~~-~~~~~~~~i~~~l~ 102 (547)
..+.++++|-+.... +.++..+-+.+.++
T Consensus 267 ~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g 296 (360)
T TIGR03597 267 TSFTFYVSNELNIHRTKLENADELYNKHLG 296 (360)
T ss_pred eEEEEEccCCceeEeechhhhHHHHHhhcC
Confidence 456666676665433 33433444444443
No 448
>PRK10037 cell division protein; Provisional
Probab=80.16 E-value=5.7 Score=39.47 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=40.4
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh-cCCcEEeeeecCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE-SELTIIPVINKID 84 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~lpiIvviNKiD 84 (547)
..|.+.|||||+..+ ..+..++..||.+|+++.+.. ...+..... .+....+++|+.+
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~------~~~i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDA------NCHIRLHQQALPAGAHILINDLR 174 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCH------HHHHhhhccccCCCeEEEEecCC
Confidence 468899999999865 467789999999999997642 122333322 2334566789887
No 449
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=79.62 E-value=2.1 Score=41.70 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=49.1
Q ss_pred CceEEEEEeCCCccc--hHHH--HH-HHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCC-CCCHH
Q 008991 19 SSFLLNLIDTPGHVD--FSYE--VS-RSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQP-TADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~d--f~~~--~~-~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~-~~~~~ 91 (547)
+++.+.++|+||... +... .. .+.....-+++|.+...+.-.++...+..+...++++ -+++|+++-. .....
T Consensus 102 ~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~~~~~~~ 181 (222)
T PRK00090 102 QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPEPGLRHA 181 (222)
T ss_pred hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCcchhHHH
Confidence 457788999998631 1110 11 1111123467787776654444556666666778775 5788998864 22234
Q ss_pred HHHHHHHHhcCC
Q 008991 92 RVKAQLKSMFDL 103 (547)
Q Consensus 92 ~~~~~i~~~l~~ 103 (547)
...+.+.+.++.
T Consensus 182 ~~~~~l~~~~gi 193 (222)
T PRK00090 182 ENLATLERLLPA 193 (222)
T ss_pred HHHHHHHHHcCC
Confidence 456667776665
No 450
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=79.39 E-value=6.8 Score=41.90 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=50.2
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCch---hhHHHH----HHHHh--cCCcEEeeeecCCCCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQA---QTVANF----YLAFE--SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~---qt~~~~----~~~~~--~~lpiIvviNKiDl~~~~ 89 (547)
.+|.+.|||||+...+ .+..++.+||.+|+.+.+..-.-. +....+ ..... .+..+-+++|+.|.....
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~ 310 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGN 310 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCch
Confidence 4688999999998765 577899999999888866432111 111112 11111 122344788999965322
Q ss_pred H-HHHHHHHHHhcC
Q 008991 90 P-DRVKAQLKSMFD 102 (547)
Q Consensus 90 ~-~~~~~~i~~~l~ 102 (547)
. ..+.+.+++.|+
T Consensus 311 ~~~~i~~~l~~~~g 324 (387)
T PHA02519 311 QSRWMEEQIRNTWG 324 (387)
T ss_pred HHHHHHHHHHHHhc
Confidence 3 335677777775
No 451
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=79.39 E-value=5.9 Score=43.52 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=48.3
Q ss_pred EEEEEeCCCccc-------------hHHHHHHHHhhcCEEEEEEECCCCCchhh---HHHHHHHHhcCCcEEeeeecCCC
Q 008991 22 LLNLIDTPGHVD-------------FSYEVSRSLAACQGALLVVDAAQGVQAQT---VANFYLAFESELTIIPVINKIDQ 85 (547)
Q Consensus 22 ~l~liDTPGh~d-------------f~~~~~~~l~~aD~ailVvDa~~g~~~qt---~~~~~~~~~~~lpiIvviNKiDl 85 (547)
.+.++|.||... .......++...+++||||.-.. +.+.- ......+.-.|...|+|++|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS-VDAERSnVTDLVsq~DP~GrRTIfVLTKVDl 491 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS-VDAERSIVTDLVSQMDPHGRRTIFVLTKVDL 491 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC-cchhhhhHHHHHHhcCCCCCeeEEEEeecch
Confidence 567999999732 33445567788999999874211 11211 22223333457889999999999
Q ss_pred CC---CCHHHHHHHHHH
Q 008991 86 PT---ADPDRVKAQLKS 99 (547)
Q Consensus 86 ~~---~~~~~~~~~i~~ 99 (547)
.. ++++++.+-++.
T Consensus 492 AEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 492 AEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhhccCCHHHHHHHHhc
Confidence 65 356665555543
No 452
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=79.30 E-value=3 Score=41.76 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=52.3
Q ss_pred eEEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCc------hhh---------HHHHHHHHhcCCcE
Q 008991 12 TSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQ------AQT---------VANFYLAFESELTI 76 (547)
Q Consensus 12 ~T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~------~qt---------~~~~~~~~~~~lpi 76 (547)
|++.++ ...|+..|..|+.|-...|...+....++|+|+.++.--+ .|+ ...|..---.-+-+
T Consensus 195 t~FqVd--kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisv 272 (379)
T KOG0099|consen 195 TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISV 272 (379)
T ss_pred EEEecc--ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhhe
Confidence 455554 3568899999999999999999999999999998875311 111 12232222234669
Q ss_pred EeeeecCCCCC
Q 008991 77 IPVINKIDQPT 87 (547)
Q Consensus 77 IvviNKiDl~~ 87 (547)
|+++||-|+..
T Consensus 273 IlFLNKqDlla 283 (379)
T KOG0099|consen 273 ILFLNKQDLLA 283 (379)
T ss_pred eEEecHHHHHH
Confidence 99999999843
No 453
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=78.23 E-value=5.9 Score=43.91 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=58.4
Q ss_pred hhcCEEEEEEECCCCCchhhHHHHHHH--HhcCCcEEeeeecCCCCCCC--HHHHHHHHHHhcCCCCccceecccccccc
Q 008991 43 AACQGALLVVDAAQGVQAQTVANFYLA--FESELTIIPVINKIDQPTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQG 118 (547)
Q Consensus 43 ~~aD~ailVvDa~~g~~~qt~~~~~~~--~~~~lpiIvviNKiDl~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~G 118 (547)
..||.+.+++|.+...+.+-....... ...++|++.|..|+|+.... ..-..+++...+++++ -+.+|.++ .+
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~--P~~~S~~~-~~ 570 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP--PIHISSKT-LS 570 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCC--CeeeccCC-CC
Confidence 789999999999977666553332211 12689999999999996543 1111256666677753 34566664 22
Q ss_pred ccccHHHHHhhCCCCC
Q 008991 119 LEHVLPAVIERIPPPR 134 (547)
Q Consensus 119 v~~Ll~~l~~~ip~p~ 134 (547)
=.+++..|+....-|.
T Consensus 571 s~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 571 SNELFIKLATMAQYPH 586 (625)
T ss_pred CchHHHHHHHhhhCCC
Confidence 2788888887665553
No 454
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=77.31 E-value=8.7 Score=41.07 Aligned_cols=82 Identities=10% Similarity=0.089 Sum_probs=48.8
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCch---hhHHHHHHHHh------cCCcEEeeeecCCCCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQA---QTVANFYLAFE------SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~---qt~~~~~~~~~------~~lpiIvviNKiDl~~~~ 89 (547)
..|.+.|||||... ...+..++.+||.+|+.+.+..-.-. +....+....+ .+..+-+++|+.|.....
T Consensus 233 ~~YD~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~ 310 (388)
T PRK13705 233 HDYDVIVIDSAPNL--GIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGS 310 (388)
T ss_pred ccCCEEEEECCCch--hHHHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCch
Confidence 45888999999875 45677789999999998876431111 11122222211 122244689999864332
Q ss_pred H-HHHHHHHHHhcC
Q 008991 90 P-DRVKAQLKSMFD 102 (547)
Q Consensus 90 ~-~~~~~~i~~~l~ 102 (547)
. ....+.+++.++
T Consensus 311 ~~~~~~~~l~~~~~ 324 (388)
T PRK13705 311 QSPWMEEQIRDAWG 324 (388)
T ss_pred HHHHHHHHHHHHhc
Confidence 2 335566766664
No 455
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=77.13 E-value=4.8 Score=40.35 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=44.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH----hcCCc-EEeeeecCCCCCCCHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF----ESELT-IIPVINKIDQPTADPDRV 93 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~lp-iIvviNKiDl~~~~~~~~ 93 (547)
.+|.+.+|||||...-. .+...+..||.+++++......-......+.... ..+++ ..+|+|++|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 35889999999864321 1123578999999987653321111222222221 23566 35788999853 33
Q ss_pred HHHHHHhcCC
Q 008991 94 KAQLKSMFDL 103 (547)
Q Consensus 94 ~~~i~~~l~~ 103 (547)
.+++.+.++.
T Consensus 188 ~~~~~~~~~~ 197 (268)
T TIGR01281 188 IERFNERVGM 197 (268)
T ss_pred HHHHHHHcCC
Confidence 4555554543
No 456
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.62 E-value=5.3 Score=46.51 Aligned_cols=66 Identities=12% Similarity=-0.112 Sum_probs=46.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl 85 (547)
+.|.+.+||||+...... .......+|++++|+....-...+..+.+..+...+.++ -+|+|++|.
T Consensus 654 ~~yD~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVRD-MRAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred hhCCEEEEcCCCcchhHH-HHHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 457889999999865432 223345799999998875544555566666776677764 599999985
No 457
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=76.60 E-value=4.3 Score=44.68 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=68.3
Q ss_pred cccHHHHHhhCCCCCcc--ccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccc
Q 008991 120 EHVLPAVIERIPPPRGI--INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPT 197 (547)
Q Consensus 120 ~~Ll~~l~~~ip~p~~~--~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v 197 (547)
+++-+.+...+|+-... ....-....|++.--..+-.|+-+||..|.+++...+.+.+.|+..-..++..+......+
T Consensus 559 eDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh~KedV 638 (683)
T KOG1145|consen 559 EDVRELLSERLPPVEEQEVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKHLKEDV 638 (683)
T ss_pred HHHHHHHHhhCCCceEEeeccceeeeeeEeeccccccccccceEeecceEeecceEEEEeCCcEEEEechhHHhhhhhhh
Confidence 34555666666653321 1111122334333211222489999999999999999999988877666676666666789
Q ss_pred cccccCcEEEEEecccccc-cccccCccc
Q 008991 198 GVLLTGQVGYVVTGMRSTK-EARIGDTLY 225 (547)
Q Consensus 198 ~~~~aGdig~i~~glk~~~-~~~~Gdtl~ 225 (547)
.++..|.=|.+. +.+-. +++.||.|-
T Consensus 639 ~~vkkg~ECGl~--~~d~~~~f~~GD~i~ 665 (683)
T KOG1145|consen 639 TEVKKGHECGLT--FDDGNEDFKEGDKIQ 665 (683)
T ss_pred hhhcCCCeeeeE--eccCCcCCCcCCEEE
Confidence 999999877664 34444 788999873
No 458
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=76.35 E-value=17 Score=29.85 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=36.9
Q ss_pred EEEEeC-CCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecC
Q 008991 23 LNLIDT-PGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKI 83 (547)
Q Consensus 23 l~liDT-PGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKi 83 (547)
+-++|+ ||..|-.-.+...+. .+++|+|--..+-.....++....+++.++|++-++--|
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~-~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENM 63 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP-IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENM 63 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH---SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT
T ss_pred EEEEeCCCCCCcHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 358999 477776666666666 678877765544444455788888999999988444333
No 459
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=76.34 E-value=7 Score=39.99 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=38.2
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh---HHHHHHHHh-cCCcE-EeeeecCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT---VANFYLAFE-SELTI-IPVINKID 84 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt---~~~~~~~~~-~~lpi-IvviNKiD 84 (547)
+|.+.+|||||.... .....++..||.+++++++..-.-... .+.+....+ .+++. -+++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 578899999987432 123345788999999987754221112 222222221 24443 47889987
No 460
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=75.66 E-value=7.9 Score=41.63 Aligned_cols=65 Identities=28% Similarity=0.394 Sum_probs=41.0
Q ss_pred CceEEEEEeCCCccchHH----HHH--HHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSY----EVS--RSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~----~~~--~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~ 86 (547)
..+.+.|+||+|-..... |+. ......|-++||+||.-|-.+ .+...+....++ .=++++|+|-.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA---~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDA---VNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHH---HHHHHHHhhhcCCceEEEEcccCC
Confidence 446788999999654333 332 223357889999999877433 333333333455 34788999953
No 461
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=75.02 E-value=2.2 Score=36.62 Aligned_cols=71 Identities=23% Similarity=0.062 Sum_probs=42.5
Q ss_pred HHHhhcCEEEEEEECCCCCchhhHHHHHHHH---hcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccccc
Q 008991 40 RSLAACQGALLVVDAAQGVQAQTVANFYLAF---ESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTG 116 (547)
Q Consensus 40 ~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~---~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g 116 (547)
...+.++.+++|.|.+...+.... +..... ..++|.+++.||.|+.... ...++.. .+++..||++|
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~-~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~~~-------~~~~~~s~~~~ 111 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK-NVPEVLVGNKSDLPILVGGNRDVLEEER--QVATEEG-------LEFAETSAKTP 111 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH-hHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHHHH-------HHHHHHhCCCc
Confidence 345678999888988765444332 222222 2357788899999984321 1111111 13567899999
Q ss_pred cccc
Q 008991 117 QGLE 120 (547)
Q Consensus 117 ~Gv~ 120 (547)
.|+.
T Consensus 112 ~~~~ 115 (124)
T smart00010 112 EEGE 115 (124)
T ss_pred chhh
Confidence 9984
No 462
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=73.36 E-value=11 Score=39.86 Aligned_cols=80 Identities=14% Similarity=0.255 Sum_probs=59.1
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC---CcEEeeeecCCCCCCCHHHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE---LTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~---lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
.+.+.++|.| |. ........+..+|.+++|++-+-..-..+.+.+..+++.+ .+.++++||.+.+... + .++
T Consensus 217 ~~~~vV~Dlp-~~-~~~~t~~vL~~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~-~--~~d 291 (366)
T COG4963 217 SFDFVVVDLP-NI-WTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP-E--PSD 291 (366)
T ss_pred cCCeEEEcCC-Cc-cchHHHHHHhcCCeEEEEecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC-C--HHH
Confidence 4678899999 54 4456677899999999999887666667777777777653 4589999999975432 2 456
Q ss_pred HHHhcCCC
Q 008991 97 LKSMFDLD 104 (547)
Q Consensus 97 i~~~l~~~ 104 (547)
+.+.++++
T Consensus 292 l~~~~~i~ 299 (366)
T COG4963 292 LEEILGIE 299 (366)
T ss_pred HHHHhCCc
Confidence 66667654
No 463
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=72.79 E-value=11 Score=36.39 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=30.2
Q ss_pred EEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF 70 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 70 (547)
.+.++|||.-.+. ......+..||.+|+|+.+.........+.+..++
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~ 197 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE 197 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc
Confidence 5778888866543 23333456788888888876655444555555554
No 464
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.96 E-value=10 Score=42.10 Aligned_cols=74 Identities=19% Similarity=0.095 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCccchHHHHHH---HHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSR---SLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVK 94 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~---~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~ 94 (547)
++.+.||||||.......... .+. .....+||++++.+..... +.+...... -+.-+++||+|... +.-..+
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt~-~lG~aL 504 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDETG-RFGSAL 504 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCcc-chhHHH
Confidence 578899999997543322111 111 1345688899876432221 222222222 35678999999743 343333
Q ss_pred HH
Q 008991 95 AQ 96 (547)
Q Consensus 95 ~~ 96 (547)
..
T Consensus 505 sv 506 (559)
T PRK12727 505 SV 506 (559)
T ss_pred HH
Confidence 33
No 465
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=71.72 E-value=5.6 Score=41.44 Aligned_cols=89 Identities=19% Similarity=0.034 Sum_probs=49.0
Q ss_pred eEEEEEeCCCccchHHHH--------HHHHhhcCEEEEEEECCCCCchhh---HHHHHHHHhcCCcEEeeeecCCCCCCC
Q 008991 21 FLLNLIDTPGHVDFSYEV--------SRSLAACQGALLVVDAAQGVQAQT---VANFYLAFESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~--------~~~l~~aD~ailVvDa~~g~~~qt---~~~~~~~~~~~lpiIvviNKiDl~~~~ 89 (547)
...-+|-|.|..+=...+ .+.....|+++-||||........ .....++... =++++||.|+.++.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dlv~~~ 161 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDLVDAE 161 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccCCCHH
Confidence 445689999987632222 223334688999999987654332 1122222222 37899999997654
Q ss_pred HHHHHHHHHHhcCCCCccceeccc
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSA 113 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SA 113 (547)
..+..++.-+.++ +..+++.+|.
T Consensus 162 ~l~~l~~~l~~ln-p~A~i~~~~~ 184 (323)
T COG0523 162 ELEALEARLRKLN-PRARIIETSY 184 (323)
T ss_pred HHHHHHHHHHHhC-CCCeEEEccc
Confidence 3222222222222 2235666666
No 466
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.98 E-value=11 Score=43.77 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~ 86 (547)
..|.+.|||||........ ......||++++|+.............+..+...+.+++ +|+|++|..
T Consensus 639 ~~yD~IIIDtPP~~~~~Da-~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 639 DHYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 706 (726)
T ss_pred hcCCEEEEeCCCccccchH-HHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcccC
Confidence 4578899999987655332 223467899999987765555556666666777788754 889999853
No 467
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=69.65 E-value=9.7 Score=37.94 Aligned_cols=82 Identities=10% Similarity=0.019 Sum_probs=42.4
Q ss_pred CceEEEEEeCCCccchHHH-HHHHHhhcCEEEEEEECCCCCchhhH----HHHHHH-HhcCCcEE-eeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSYE-VSRSLAACQGALLVVDAAQGVQAQTV----ANFYLA-FESELTII-PVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~-~~~~l~~aD~ailVvDa~~g~~~qt~----~~~~~~-~~~~lpiI-vviNKiDl~~~~~~ 91 (547)
..|.+.||||||+...... ...++..+|.+++++.++.- ..... +.+... ...+.++. ++.|+.. .....
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~-sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~ 191 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMM-ALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDRED 191 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchH-HHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHH
Confidence 3588899999987532111 11233479999999887542 22221 122111 22356655 4445532 12223
Q ss_pred HHHHHHHHhcCC
Q 008991 92 RVKAQLKSMFDL 103 (547)
Q Consensus 92 ~~~~~i~~~l~~ 103 (547)
...+++.+.++.
T Consensus 192 ~~~~~l~~~~g~ 203 (270)
T cd02040 192 ELIDAFAKRLGT 203 (270)
T ss_pred HHHHHHHHHcCC
Confidence 445666666654
No 468
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=69.32 E-value=4.2 Score=41.97 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=39.3
Q ss_pred cCCcEEeeeecCCCCCC-----C-----HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 72 SELTIIPVINKIDQPTA-----D-----PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~-----~-----~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.|+|+++|++|+|.... + ++.+...++...=......+++|+|...|++-|...|++.+
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 46899999999997321 1 12222233332211123678999999999999999998865
No 469
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.04 E-value=14 Score=37.51 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=37.9
Q ss_pred ceEEEEEeCCCccchH----HHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC
Q 008991 20 SFLLNLIDTPGHVDFS----YEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT 87 (547)
Q Consensus 20 ~~~l~liDTPGh~df~----~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~ 87 (547)
++.+-|+||||..... .++...+. ..|-.+||+||+.+.+ +..+.+..-...++ -=++++|.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~-~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCC-CEEEEEeecCCC
Confidence 5778899999987433 33333332 3567899999875321 11122222222222 356789999754
No 470
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=68.46 E-value=9 Score=39.07 Aligned_cols=27 Identities=37% Similarity=0.409 Sum_probs=20.0
Q ss_pred CCCCCeEEEeCCC--ceEEEEEeCCCccc
Q 008991 7 LNGPGTSEAHNPS--SFLLNLIDTPGHVD 33 (547)
Q Consensus 7 s~~pG~T~~~~~~--~~~l~liDTPGh~d 33 (547)
++.||+|+....- +..+.++||||...
T Consensus 150 ~~~~g~T~~~~~~~~~~~~~l~DtPGi~~ 178 (287)
T PRK09563 150 GNRPGVTKAQQWIKLGKGLELLDTPGILW 178 (287)
T ss_pred CCCCCeEEEEEEEEeCCcEEEEECCCcCC
Confidence 6799999987421 12578999999854
No 471
>PRK14845 translation initiation factor IF-2; Provisional
Probab=68.35 E-value=13 Score=44.82 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=49.1
Q ss_pred ccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccc---ccccccCcccCC
Q 008991 154 KGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRST---KEARIGDTLYHN 227 (547)
Q Consensus 154 ~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~---~~~~~Gdtl~~~ 227 (547)
.+.|+-++|.+|+|++|..|. ..+. ..+..|..+.....+++++.+|+-|.|. +.+. .++..||+|...
T Consensus 937 ~~~IaG~~V~~G~i~~~~~l~--r~~~-~~iG~i~Slk~~k~~V~ev~~G~ecgI~--i~~~~~gr~~~~gD~l~~~ 1008 (1049)
T PRK14845 937 NPAIVGVEVLEGTLRVGVTLI--KEDG-MKVGTVRSIKDRGENVKEAKAGKAVAIA--IEGAILGRHVDEGETLYVD 1008 (1049)
T ss_pred CCeEEEEEEeeCEEecCcEEE--ecCC-EEEEEEchHhccCccccEeCCCCEEEEE--EecccccCCCCCCCEEEEe
Confidence 389999999999999998763 3222 2345566666566789999999987774 4333 367778877643
No 472
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=67.73 E-value=20 Score=35.76 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=47.2
Q ss_pred CceEEEEEeCCCccchH------HHH---HHHHhh--cCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFS------YEV---SRSLAA--CQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~------~~~---~~~l~~--aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~ 86 (547)
..|.+.++|||...... ..+ ...+.. ++++++|+....-...++.+.+..+...++++ -+|+|++...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 46889999998642211 111 112222 46888998887666667788888888899984 7899999764
Q ss_pred C
Q 008991 87 T 87 (547)
Q Consensus 87 ~ 87 (547)
.
T Consensus 203 ~ 203 (254)
T cd00550 203 D 203 (254)
T ss_pred c
Confidence 3
No 473
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=66.16 E-value=5.5 Score=40.38 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=18.8
Q ss_pred CCCCCeEEEeCCCce--EEEEEeCCCc
Q 008991 7 LNGPGTSEAHNPSSF--LLNLIDTPGH 31 (547)
Q Consensus 7 s~~pG~T~~~~~~~~--~l~liDTPGh 31 (547)
++.||+|+....-.. .+.++||||.
T Consensus 147 ~~~~g~T~~~~~~~~~~~~~l~DtPG~ 173 (276)
T TIGR03596 147 GNRPGVTKGQQWIKLSDGLELLDTPGI 173 (276)
T ss_pred CCCCCeecceEEEEeCCCEEEEECCCc
Confidence 688999997643222 4689999998
No 474
>PRK11519 tyrosine kinase; Provisional
Probab=65.97 E-value=17 Score=42.09 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=48.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~ 86 (547)
+.|.+.|||||...... ........||++++|+-...-...+....+......+.+++ +|+|+++..
T Consensus 634 ~~yD~ViiDtpP~~~v~-Da~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 634 KNYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred hcCCEEEEeCCCcccch-HHHHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 45788999999865432 33344577999999998765555555666666777888866 899999753
No 475
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=65.16 E-value=13 Score=36.26 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=45.7
Q ss_pred EEEEeCCCccc------hHHHHHHHHhhcC---EEEEEEECCCCCchhh------HHHHHHHHhcCCcEEeeeecCCCCC
Q 008991 23 LNLIDTPGHVD------FSYEVSRSLAACQ---GALLVVDAAQGVQAQT------VANFYLAFESELTIIPVINKIDQPT 87 (547)
Q Consensus 23 l~liDTPGh~d------f~~~~~~~l~~aD---~ailVvDa~~g~~~qt------~~~~~~~~~~~lpiIvviNKiDl~~ 87 (547)
+-++|+||+.+ -.....+.+.+-+ ++++++|+.= +...| ...+.......+|.|=|++||||..
T Consensus 100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 45899999865 2334445555422 4667777632 11112 2333344567899999999999965
Q ss_pred CCHHHHHHHHHHhcCC
Q 008991 88 ADPDRVKAQLKSMFDL 103 (547)
Q Consensus 88 ~~~~~~~~~i~~~l~~ 103 (547)
. ...+++++.++.
T Consensus 179 ~---~~k~~l~~Fl~~ 191 (273)
T KOG1534|consen 179 D---KNKKELERFLNP 191 (273)
T ss_pred h---hhHHHHHHhcCC
Confidence 4 334555555543
No 476
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=63.58 E-value=41 Score=33.94 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=42.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE---EeeeecCCC
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTI---IPVINKIDQ 85 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi---IvviNKiDl 85 (547)
+.+-|+|||+-.. ..+...+..+|.+|+|....-.--.++......+...+.+. .+|+|+++-
T Consensus 113 ~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~ 178 (262)
T COG0455 113 YDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRS 178 (262)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 4677999998654 34555666679999988664333334456666677777763 389999983
No 477
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.22 E-value=18 Score=38.84 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=38.6
Q ss_pred ceEEEEEeCCCccch----HHHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC
Q 008991 20 SFLLNLIDTPGHVDF----SYEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT 87 (547)
Q Consensus 20 ~~~l~liDTPGh~df----~~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~ 87 (547)
++.+.||||||.... ..++.+.+. ..+.++||+||+.+.+. ....+..-...++ -=++++|+|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~~~~i-dglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKDIHI-DGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhcCCCC-CEEEEEcccCCC
Confidence 467889999998543 333444443 35778999998654221 1222222222233 346789999754
No 478
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.88 E-value=16 Score=38.76 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=39.6
Q ss_pred CCCceEEEEEeCCCccc----hHHHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcC--Cc-EEeeeecCCCC
Q 008991 17 NPSSFLLNLIDTPGHVD----FSYEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESE--LT-IIPVINKIDQP 86 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~d----f~~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~--lp-iIvviNKiDl~ 86 (547)
..+++.+.|+||.|-.. ...|+..... ..|-+|+|+||+-|-.+.. ++..++ +- --++++|+|-.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~-----Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA-----QARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH-----HHHHHHHhhccceEEEEecccC
Confidence 34678999999999643 2223332222 3799999999987733222 222221 22 34678999953
No 479
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=62.46 E-value=12 Score=37.70 Aligned_cols=83 Identities=6% Similarity=-0.000 Sum_probs=45.4
Q ss_pred CceEEEEEeCCCccchH-HHHHHHHhhcCEEEEEEECCCCCch---hhHHHHHHHHhcCCcEE-eeeecCCCCCCCHHHH
Q 008991 19 SSFLLNLIDTPGHVDFS-YEVSRSLAACQGALLVVDAAQGVQA---QTVANFYLAFESELTII-PVINKIDQPTADPDRV 93 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~-~~~~~~l~~aD~ailVvDa~~g~~~---qt~~~~~~~~~~~lpiI-vviNKiDl~~~~~~~~ 93 (547)
.+|.+.+|||||..-.. .....++.+||.+++++......-. +..+.+......++++. ++.|+.+.. ...+.
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~~ 192 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GEREL 192 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHHH
Confidence 45888999999874211 1112234589999999875321111 11222222223456653 778977532 12455
Q ss_pred HHHHHHhcCC
Q 008991 94 KAQLKSMFDL 103 (547)
Q Consensus 94 ~~~i~~~l~~ 103 (547)
.+++++.++.
T Consensus 193 ~e~l~~~~~~ 202 (273)
T PRK13232 193 LEAFAKKLGS 202 (273)
T ss_pred HHHHHHHhCC
Confidence 6777776653
No 480
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=62.32 E-value=17 Score=36.11 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=50.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh---HHHHHHHHhc--C--CcEEeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT---VANFYLAFES--E--LTIIPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt---~~~~~~~~~~--~--lpiIvviNKiDl~~~~~~ 91 (547)
++|.+.+||||+.. ......++.++|.++.-+-+..-....+ ...+....+. + ....++.|+.|.......
T Consensus 118 ~~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (259)
T COG1192 118 DDYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLAD 195 (259)
T ss_pred cCCCEEEECCCCch--hHHHHHHHHHcCeeEEecCchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchHH
Confidence 46889999999987 4567788999996665544322111111 2222222221 1 235578899997666666
Q ss_pred HHHHHHHHhcC
Q 008991 92 RVKAQLKSMFD 102 (547)
Q Consensus 92 ~~~~~i~~~l~ 102 (547)
...+++.+.++
T Consensus 196 ~~~~~~~~~~~ 206 (259)
T COG1192 196 EVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHhc
Confidence 66777777665
No 481
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.66 E-value=20 Score=38.30 Aligned_cols=64 Identities=19% Similarity=0.078 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCccch----HHHHHHHHh--hcCEEEEEEECCCCCchhhH-HHHHHHHhcCCcEEeeeecCCCC
Q 008991 20 SFLLNLIDTPGHVDF----SYEVSRSLA--ACQGALLVVDAAQGVQAQTV-ANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~df----~~~~~~~l~--~aD~ailVvDa~~g~~~qt~-~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
++.+.||||||.... ..++..... ..|..+||+++.. ..+.. +.+..-...++ --++++|+|-.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~l~i-~glI~TKLDET 355 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAEIPI-DGFIITKMDET 355 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCcCCC-CEEEEEcccCC
Confidence 478889999998443 334444333 2466677877643 22222 22221111222 35679999974
No 482
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=61.22 E-value=15 Score=37.02 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=43.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHh------hcCEEEEEEECCCCCchhh----HHHH-HHHHhcCCcEE-eeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLA------ACQGALLVVDAAQGVQAQT----VANF-YLAFESELTII-PVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~------~aD~ailVvDa~~g~~~qt----~~~~-~~~~~~~lpiI-vviNKiDl~ 86 (547)
++|.+.+|||+|.. +..++. +||.++++++... .+... .+.+ ......+++++ ++.|+...
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~-~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~- 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEM-MAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV- 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccH-HHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC-
Confidence 45888999998843 222333 7999999987742 22222 1122 22334466644 78897531
Q ss_pred CCCHHHHHHHHHHhcCC
Q 008991 87 TADPDRVKAQLKSMFDL 103 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~~ 103 (547)
.......+++.+.++.
T Consensus 190 -~~~~~~~e~l~~~~~~ 205 (275)
T PRK13233 190 -DGELELLEEFTDAIGT 205 (275)
T ss_pred -CcHHHHHHHHHHHcCC
Confidence 1223456677766653
No 483
>COG1161 Predicted GTPases [General function prediction only]
Probab=61.05 E-value=4.6 Score=42.07 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.1
Q ss_pred CCCCCeEEEeCC--CceEEEEEeCCCcc
Q 008991 7 LNGPGTSEAHNP--SSFLLNLIDTPGHV 32 (547)
Q Consensus 7 s~~pG~T~~~~~--~~~~l~liDTPGh~ 32 (547)
|+.||+|...+. -+..+.|+||||..
T Consensus 161 s~~PG~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 161 SNRPGTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred CCCCceecceEEEEcCCCeEEecCCCcC
Confidence 789999998753 23347899999974
No 484
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=60.90 E-value=24 Score=32.35 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=8.1
Q ss_pred HHHHHHhcCCcEEeee
Q 008991 65 NFYLAFESELTIIPVI 80 (547)
Q Consensus 65 ~~~~~~~~~lpiIvvi 80 (547)
....+...+.|+|+|.
T Consensus 121 ~~dl~~~~~~~vilV~ 136 (166)
T TIGR00347 121 TADLIKLLQLPVILVV 136 (166)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 3344455555655555
No 485
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=60.80 E-value=17 Score=36.76 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=46.9
Q ss_pred CCCceEEEEEeCC-CccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCC
Q 008991 17 NPSSFLLNLIDTP-GHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQP 86 (547)
Q Consensus 17 ~~~~~~l~liDTP-Gh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~ 86 (547)
.+..|.+-+|||| |..+-...+.. ..+|++++|....+-......+....+...+.|++ ++.|+.+..
T Consensus 163 ~~~~~D~vIID~PP~~g~~d~~i~~--~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 163 LWGEYDYVIIDTPPGTGDADATVLQ--RIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred hccCCCEEEEeCCCCchHHHHHHHh--ccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCc
Confidence 3445888899996 44444433333 44668888877666555566777888888899966 778987764
No 486
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=60.29 E-value=8.8 Score=38.84 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=42.0
Q ss_pred EeCCCceEEEEEeCC-CccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHHHHHHhcCCcEEeeee
Q 008991 15 AHNPSSFLLNLIDTP-GHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANFYLAFESELTIIPVIN 81 (547)
Q Consensus 15 ~~~~~~~~l~liDTP-Gh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~~~lpiIvviN 81 (547)
++++....+-+|||| |..|-.-.+...+...|+|++|--. +.+..++ .+-..++++.++|++=++-
T Consensus 151 ~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTP-Q~vAl~Dv~K~i~fc~K~~I~ilGvVE 218 (300)
T KOG3022|consen 151 DVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTP-QEVALQDVRKEIDFCRKAGIPILGVVE 218 (300)
T ss_pred cCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCc-hhhhhHHHHhhhhhhhhcCCceEEEEe
Confidence 445666667799996 6666555555666667998877432 3333333 4556777888999775443
No 487
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=60.29 E-value=6 Score=34.40 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=21.7
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCCCCccceecccccc
Q 008991 79 VINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTG 116 (547)
Q Consensus 79 viNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g 116 (547)
++||+|++. .++..+.+.+.+ +..+++++||...
T Consensus 1 AaNK~D~~~--a~~ni~kl~~~~--~~~~vVp~SA~aE 34 (109)
T PF08438_consen 1 AANKADLPA--ADENIEKLKEKY--PDEPVVPTSAAAE 34 (109)
T ss_dssp EEE-GGG-S---HHHHHHHHHHH--TT-EEEEE-HHHH
T ss_pred CCccccccc--cHhHHHHHHHhC--CCCceeeccHHHH
Confidence 589999865 355667777766 4468999999864
No 488
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=60.05 E-value=59 Score=35.22 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccc--ccccccccHHHHHhhCCC
Q 008991 63 VANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAK--TGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 63 ~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk--~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+....+++.|.|+++++|=.+-...+.....+++++.++. +++++++. +...|..+|+.+.-.+|-
T Consensus 170 ervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~v---pVlpvnc~~l~~~DI~~Il~~vLyEFPV 238 (492)
T PF09547_consen 170 ERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDV---PVLPVNCEQLREEDITRILEEVLYEFPV 238 (492)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCC---cEEEeehHHcCHHHHHHHHHHHHhcCCc
Confidence 34556677789999999998886555567778888888876 56666654 566788888888777764
No 489
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.77 E-value=19 Score=38.50 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=40.4
Q ss_pred CceEEEEEeCCCccchH----HHHHHHHhhc--C-EEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFS----YEVSRSLAAC--Q-GALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~----~~~~~~l~~a--D-~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
.++.+.||||||..-.. .++...+..+ + -.+||+||+.+.... .+.+......++ -=++++|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~~-~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFSY-KTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCCC-CEEEEEeccCC
Confidence 45788999999985432 3444555543 3 588999998873322 233333322232 35678999964
No 490
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=59.39 E-value=53 Score=29.18 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=41.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHh
Q 008991 354 TVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNEL 410 (547)
Q Consensus 354 ~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~L 410 (547)
-|++.|.+|.++.+.+++.|.+.-+.+.+-+..+ +...+.+.+|-.-- .++.+.+
T Consensus 68 ~m~l~v~ip~~~~~~~~~~l~~~~~~i~~~~~~~-~~~~~~~~i~pg~~-r~l~~~v 122 (125)
T PF09377_consen 68 KMRLRVTIPSKYAKKVKDKLLKLGAKIEEEEQND-GSWEMVFLIDPGLY-RELDELV 122 (125)
T ss_dssp EEEEEEEEBCCCHHHHHHHHHHHSEEEEEEEETT-SCEEEEEEEEGGGH-HHHHHHH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHhhcEeeecccCC-CeEEEEEEECCcch-HHHHHHH
Confidence 4689999999999999999999988776665544 45567788887654 3555544
No 491
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=57.90 E-value=11 Score=46.39 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=38.0
Q ss_pred EEEEeCCCcc--------chHHHHHHHH---------hhcCEEEEEEECCCCCchhh----------HHHHHH---HHhc
Q 008991 23 LNLIDTPGHV--------DFSYEVSRSL---------AACQGALLVVDAAQGVQAQT----------VANFYL---AFES 72 (547)
Q Consensus 23 l~liDTPGh~--------df~~~~~~~l---------~~aD~ailVvDa~~g~~~qt----------~~~~~~---~~~~ 72 (547)
-.+|||+|.- .-..+|..-+ +-.||+|++||+.+=..... +..+.. ....
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~ 242 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA 242 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3599999931 1223343333 24899999999875322111 111111 1223
Q ss_pred CCcEEeeeecCCCC
Q 008991 73 ELTIIPVINKIDQP 86 (547)
Q Consensus 73 ~lpiIvviNKiDl~ 86 (547)
.+|+.++++|||+.
T Consensus 243 ~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 243 RFPVYLVLTKADLL 256 (1169)
T ss_pred CCCEEEEEecchhh
Confidence 68999999999985
No 492
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=56.79 E-value=21 Score=35.91 Aligned_cols=83 Identities=8% Similarity=0.005 Sum_probs=42.8
Q ss_pred CceEEEEEeCCCccchHHH-HHHHHhhcCEEEEEEECCCCCchhhH---HHHHHH-HhcCCcEE-eeeecCCCCCCCHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYE-VSRSLAACQGALLVVDAAQGVQAQTV---ANFYLA-FESELTII-PVINKIDQPTADPDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~-~~~~l~~aD~ailVvDa~~g~~~qt~---~~~~~~-~~~~lpiI-vviNKiDl~~~~~~~ 92 (547)
++|.+.||||||..-.... ...++..+|.+++++.+..-.-.... +.+... ...++++. ++.|+.. .....+
T Consensus 114 ~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~ 191 (275)
T TIGR01287 114 DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKE 191 (275)
T ss_pred ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHH
Confidence 3588899999986522111 11234578999999977543221222 222222 22456654 4456532 122344
Q ss_pred HHHHHHHhcCC
Q 008991 93 VKAQLKSMFDL 103 (547)
Q Consensus 93 ~~~~i~~~l~~ 103 (547)
..+++.+.++.
T Consensus 192 ~~e~l~~~~~~ 202 (275)
T TIGR01287 192 LIDEFAKKLGT 202 (275)
T ss_pred HHHHHHHHhCC
Confidence 45666665554
No 493
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.46 E-value=31 Score=37.29 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=37.6
Q ss_pred CceEEEEEeCCCccch----HHHHHHHHhh-----cCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDF----SYEVSRSLAA-----CQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df----~~~~~~~l~~-----aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
.++.+.||||||.... ..++...+.. ..-.+||+||+.+.... ......-...++ -=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~~-~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLNY-RRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCCC-CEEEEEcccCC
Confidence 3567789999998532 2233333332 23588999998764222 222222222233 35678999964
No 494
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=55.84 E-value=19 Score=35.26 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=46.5
Q ss_pred EEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEE
Q 008991 356 VATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYAS 419 (547)
Q Consensus 356 ~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as 419 (547)
++.|-+|.+|.|.+.+++.+. |.+..-+...++..+-..++|---= .+|+..|..+|+|.+.
T Consensus 165 ~vaVkip~e~~~k~~~~l~k~-g~i~~eew~~dgsw~~~~~ipaG~q-~e~~~~l~~~~kG~~q 226 (234)
T COG1500 165 KVAVKIPVEYAGKAYGLLRKF-GEIKKEEWQEDGSWICVLEIPAGNQ-DEFYELLNELTKGEVQ 226 (234)
T ss_pred eEEEEecccccchHHHHHHHh-hhhhhhhcccCCceEEEEeeCcchH-HHHHHHHHHhcCCcce
Confidence 377889999999999988655 5565555554455566677776543 6899999999999874
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.43 E-value=35 Score=36.95 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=37.9
Q ss_pred ceEEEEEeCCCccchH----HHHHHHHh---hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC
Q 008991 20 SFLLNLIDTPGHVDFS----YEVSRSLA---ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~df~----~~~~~~l~---~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
++.+.||||||+..+. .++...+. ...-+.||++++.+.. ...+.+......++ -=++++|+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEeccccc
Confidence 4678899999986543 23334444 2346788999876421 11222322222232 25789999974
No 496
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=53.92 E-value=24 Score=39.29 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCcccee--ccccccccccccHHHHHhhC
Q 008991 63 VANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALL--TSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 63 ~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~--~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+|+..++.+++|+++++||.|......-+.++++.+..|+ ++.. .=++-|+|-.++-+.+++.+
T Consensus 362 ~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv---~va~~~~~~~Gg~Gai~LA~aVveA~ 428 (557)
T PRK13505 362 ERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGV---EVALSEVWAKGGEGGVELAEKVVELI 428 (557)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCC---CEEEecccccCCcchHHHHHHHHHHH
Confidence 55778888899999999999997543222333444444554 3332 23455677777666666543
No 497
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=53.82 E-value=56 Score=34.28 Aligned_cols=37 Identities=24% Similarity=0.073 Sum_probs=26.0
Q ss_pred eEEEEEeCCCccchHHHHHHH-------HhhcCEEEEEEECCCC
Q 008991 21 FLLNLIDTPGHVDFSYEVSRS-------LAACQGALLVVDAAQG 57 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~-------l~~aD~ailVvDa~~g 57 (547)
...-+|.|.|..+-...+... .-..|+++.|||+...
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~ 136 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAV 136 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchh
Confidence 455689999998865444332 1246889999999754
No 498
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=53.78 E-value=47 Score=31.51 Aligned_cols=77 Identities=16% Similarity=0.358 Sum_probs=51.3
Q ss_pred ceEEEEEeCCCcc-------chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCCCCCHH
Q 008991 20 SFLLNLIDTPGHV-------DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQPTADPD 91 (547)
Q Consensus 20 ~~~l~liDTPGh~-------df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~~~~~~ 91 (547)
.+.+.+++-.|.. ++...+.+.+.. -+|+|.++..|.-.++...+..+...++++. +++|+++-+
T Consensus 99 ~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a--~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~----- 171 (199)
T PF13500_consen 99 EYDVVLVEGAGGLMVPIFSGDLNADIAKALGA--PVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVPEP----- 171 (199)
T ss_dssp TTCEEEEEESSSTTSECCTTEEHHHHHHHHT---EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC-----
T ss_pred cCCEEEEeCCcccCcccccChHHHHHHHHcCC--CEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH-----
Confidence 4566777777653 355666666644 3788888888876777777777777888855 889997643
Q ss_pred HHHHHHHHhcCC
Q 008991 92 RVKAQLKSMFDL 103 (547)
Q Consensus 92 ~~~~~i~~~l~~ 103 (547)
+..+.+.+..++
T Consensus 172 ~~~~~l~~~~~i 183 (199)
T PF13500_consen 172 ENLEALREKSGI 183 (199)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCC
Confidence 345666666654
No 499
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=52.96 E-value=60 Score=32.42 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=45.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-hcCCcEEeeeecCCCCCCCHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-ESELTIIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~lpiIvviNKiDl~~~~~~~~~~~i 97 (547)
..+.+.++|||-.. .......+..||.++.|+-+.-. .+..+.. ...-..-+++|+.|-...--.++.+-+
T Consensus 116 ~~~~~iliD~P~g~--~~~~~~al~~aD~vL~V~~~Da~------s~~~L~q~~l~~~~~~liNq~~~~s~l~~D~~~~~ 187 (243)
T PF06564_consen 116 GPYDWILIDTPPGP--SPYTRQALAAADLVLVVVNPDAA------SHARLHQRALPAGHRFLINQYDPASQLQRDLLQVW 187 (243)
T ss_pred CCCCEEEEeCCCCC--cHHHHHHHHhCCeEEEEeCCCHH------HHHHHHHhcccCCcEEEEeccCccchHHHHHHHHH
Confidence 45778899999743 45567788999999999866431 1221111 111225789999997544334444444
Q ss_pred HHhc
Q 008991 98 KSMF 101 (547)
Q Consensus 98 ~~~l 101 (547)
++.+
T Consensus 188 ~~~l 191 (243)
T PF06564_consen 188 RQSL 191 (243)
T ss_pred HHhh
Confidence 4444
No 500
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=51.42 E-value=36 Score=34.17 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=43.2
Q ss_pred CceEEEEEeCCCccchHH-HHHHHHhhcCEEEEEEECCCCCchhh----HHHHHHHH-hcCCcE-EeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSY-EVSRSLAACQGALLVVDAAQGVQAQT----VANFYLAF-ESELTI-IPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~-~~~~~l~~aD~ailVvDa~~g~~~qt----~~~~~~~~-~~~lpi-IvviNKiDl~~~~~~ 91 (547)
.+|.+.||||||..-... ....++.+||.+++++.+.. .+... .+.+.... ..++++ -+++|+... ....
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~-~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~ 192 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEM-MAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNER 192 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCch-hHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchH
Confidence 458899999998642111 11123348999999986643 22222 22222222 235554 367787532 1234
Q ss_pred HHHHHHHHhcC
Q 008991 92 RVKAQLKSMFD 102 (547)
Q Consensus 92 ~~~~~i~~~l~ 102 (547)
+..+++.+.++
T Consensus 193 e~~~~l~~~~~ 203 (274)
T PRK13235 193 EMIEELARKIG 203 (274)
T ss_pred HHHHHHHHHcC
Confidence 45566666665
Done!