Query 008991
Match_columns 547
No_of_seqs 490 out of 3367
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ywe_A GTP-binding protein LEP 100.0 2E-144 6E-149 1194.7 52.8 529 17-546 69-599 (600)
2 3cb4_D GTP-binding protein LEP 100.0 3E-142 1E-146 1178.4 52.0 527 17-546 67-594 (599)
3 4fn5_A EF-G 1, elongation fact 100.0 2.3E-76 8E-81 669.2 32.1 401 19-429 83-695 (709)
4 2rdo_7 EF-G, elongation factor 100.0 3E-73 1E-77 641.8 44.1 402 19-430 80-690 (704)
5 3j25_A Tetracycline resistance 100.0 1.3E-76 4.6E-81 663.2 11.9 427 17-467 63-637 (638)
6 2xex_A Elongation factor G; GT 100.0 4.6E-73 1.6E-77 639.7 38.1 402 19-430 73-678 (693)
7 1dar_A EF-G, elongation factor 100.0 4.6E-73 1.6E-77 639.5 33.2 403 19-430 75-679 (691)
8 2dy1_A Elongation factor G; tr 100.0 5.8E-70 2E-74 612.2 35.1 401 17-430 70-649 (665)
9 1n0u_A EF-2, elongation factor 100.0 8.5E-66 2.9E-70 591.3 33.2 422 17-467 94-822 (842)
10 3vqt_A RF-3, peptide chain rel 100.0 2.6E-59 9E-64 514.0 23.5 338 17-365 96-547 (548)
11 3tr5_A RF-3, peptide chain rel 100.0 4.7E-51 1.6E-55 446.4 30.1 301 17-327 78-475 (528)
12 2h5e_A Peptide chain release f 100.0 2.8E-50 9.5E-55 440.6 27.7 300 17-326 78-475 (529)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 2.2E-47 7.6E-52 387.5 14.7 238 215-491 6-253 (332)
14 1d2e_A Elongation factor TU (E 100.0 3.7E-29 1.3E-33 265.0 17.8 216 9-228 49-290 (397)
15 2c78_A Elongation factor TU-A; 100.0 6.7E-29 2.3E-33 263.6 18.7 209 16-228 70-308 (405)
16 3j2k_7 ERF3, eukaryotic polype 100.0 2E-28 6.9E-33 262.5 21.8 214 10-229 79-328 (439)
17 1g7s_A Translation initiation 100.0 4E-30 1.4E-34 284.3 5.8 293 22-323 71-437 (594)
18 1zun_B Sulfate adenylate trans 100.0 1.3E-27 4.3E-32 256.1 22.5 208 17-229 100-327 (434)
19 1jny_A EF-1-alpha, elongation 100.0 5.3E-28 1.8E-32 259.1 18.8 215 9-228 67-317 (435)
20 3mca_A HBS1, elongation factor 100.0 3.9E-29 1.3E-33 276.9 8.5 215 9-229 238-490 (592)
21 3p26_A Elongation factor 1 alp 100.0 1.6E-27 5.5E-32 258.6 20.8 220 10-229 95-363 (483)
22 2elf_A Protein translation elo 99.9 1.1E-27 3.9E-32 251.0 16.6 205 16-226 55-275 (370)
23 3avx_A Elongation factor TS, e 99.9 2.2E-27 7.5E-32 273.1 18.0 216 9-228 342-581 (1289)
24 3sjy_A Translation initiation 99.9 8.7E-27 3E-31 247.2 20.7 204 21-228 75-308 (403)
25 1kk1_A EIF2gamma; initiation o 99.9 1E-26 3.6E-31 247.2 20.3 205 21-228 83-316 (410)
26 1f60_A Elongation factor EEF1A 99.9 1.8E-26 6E-31 248.7 21.1 214 10-228 69-328 (458)
27 1r5b_A Eukaryotic peptide chai 99.9 4.6E-27 1.6E-31 253.9 15.3 213 10-228 105-356 (467)
28 1s0u_A EIF-2-gamma, translatio 99.9 1.9E-26 6.5E-31 245.0 18.9 205 21-228 81-314 (408)
29 3izq_1 HBS1P, elongation facto 99.9 1.4E-26 4.8E-31 257.2 18.1 220 10-229 229-497 (611)
30 1wb1_A Translation elongation 99.9 1.2E-27 4E-32 259.3 7.6 213 9-225 56-281 (482)
31 1zo1_I IF2, translation initia 99.9 1.1E-26 3.8E-31 251.2 6.4 292 19-322 49-386 (501)
32 3izy_P Translation initiation 99.9 3.4E-26 1.2E-30 249.3 4.7 214 8-228 33-259 (537)
33 3qq5_A Small GTP-binding prote 99.8 5.9E-22 2E-26 210.6 -8.9 218 7-230 63-327 (423)
34 1wf3_A GTP-binding protein; GT 99.6 5.6E-15 1.9E-19 150.4 9.7 123 7-132 36-173 (301)
35 3iev_A GTP-binding protein ERA 99.5 1.1E-14 3.9E-19 148.6 10.2 125 7-132 39-182 (308)
36 3t1o_A Gliding protein MGLA; G 99.5 4.1E-14 1.4E-18 132.5 10.7 112 17-130 70-190 (198)
37 4dhe_A Probable GTP-binding pr 99.5 2E-14 6.8E-19 138.3 7.2 129 7-135 59-214 (223)
38 2dyk_A GTP-binding protein; GT 99.5 3.4E-14 1.2E-18 128.8 7.9 120 7-131 30-161 (161)
39 2fg5_A RAB-22B, RAS-related pr 99.5 9.6E-14 3.3E-18 130.7 11.2 124 7-133 53-187 (192)
40 4bas_A ADP-ribosylation factor 99.5 4.8E-14 1.7E-18 132.7 8.2 125 7-131 48-188 (199)
41 3q72_A GTP-binding protein RAD 99.5 1.1E-13 3.8E-18 126.2 9.9 121 7-130 31-162 (166)
42 2efe_B Small GTP-binding prote 99.5 1.7E-13 5.8E-18 126.8 11.2 115 16-133 56-176 (181)
43 1r8s_A ADP-ribosylation factor 99.5 3.9E-13 1.3E-17 122.3 13.2 116 16-131 39-161 (164)
44 1zj6_A ADP-ribosylation factor 99.5 1.7E-13 5.8E-18 128.2 10.8 117 19-135 58-181 (187)
45 1svi_A GTP-binding protein YSX 99.5 9.9E-14 3.4E-18 130.3 9.0 125 7-131 53-194 (195)
46 4dkx_A RAS-related protein RAB 99.5 1.6E-13 5.6E-18 132.9 10.0 116 14-132 55-176 (216)
47 1ek0_A Protein (GTP-binding pr 99.4 3E-13 1E-17 123.3 11.1 121 8-131 34-168 (170)
48 2lkc_A Translation initiation 99.4 3.3E-14 1.1E-18 131.2 4.7 112 19-130 53-169 (178)
49 1z0j_A RAB-22, RAS-related pro 99.4 2.7E-13 9.3E-18 123.7 10.7 122 7-131 36-168 (170)
50 1fzq_A ADP-ribosylation factor 99.4 4.9E-13 1.7E-17 124.9 12.7 122 8-132 46-178 (181)
51 1zd9_A ADP-ribosylation factor 99.4 4.3E-13 1.5E-17 125.8 12.3 125 8-132 53-185 (188)
52 3gj0_A GTP-binding nuclear pro 99.4 4.6E-14 1.6E-18 136.0 5.5 122 7-131 45-174 (221)
53 4dcu_A GTP-binding protein ENG 99.4 1.7E-13 5.9E-18 147.3 9.6 125 7-131 224-368 (456)
54 1r2q_A RAS-related protein RAB 99.4 2.8E-13 9.7E-18 123.4 9.6 121 8-131 37-168 (170)
55 3pqc_A Probable GTP-binding pr 99.4 1.8E-13 6E-18 128.1 8.3 125 7-131 52-193 (195)
56 3tkl_A RAS-related protein RAB 99.4 3.1E-13 1E-17 126.9 9.8 113 16-131 60-178 (196)
57 2il1_A RAB12; G-protein, GDP, 99.4 2.1E-13 7.3E-18 128.5 8.7 113 16-130 70-188 (192)
58 2hjg_A GTP-binding protein ENG 99.4 1.7E-13 5.7E-18 146.5 8.9 124 7-130 204-347 (436)
59 4dsu_A GTPase KRAS, isoform 2B 99.4 3.6E-13 1.2E-17 125.3 10.0 113 16-131 47-165 (189)
60 1c1y_A RAS-related protein RAP 99.4 2E-13 6.9E-18 124.2 8.1 113 16-130 46-165 (167)
61 2erx_A GTP-binding protein DI- 99.4 4.3E-13 1.5E-17 122.4 10.3 114 17-133 47-168 (172)
62 1zbd_A Rabphilin-3A; G protein 99.4 4.3E-13 1.5E-17 127.0 10.5 120 8-130 39-169 (203)
63 1z0f_A RAB14, member RAS oncog 99.4 4.9E-13 1.7E-17 123.1 10.6 112 16-130 59-176 (179)
64 2p5s_A RAS and EF-hand domain 99.4 3.9E-13 1.3E-17 127.3 10.0 114 15-131 71-196 (199)
65 1m2o_B GTP-binding protein SAR 99.4 4.2E-13 1.4E-17 126.4 9.9 120 8-130 53-190 (190)
66 2g6b_A RAS-related protein RAB 99.4 4E-13 1.4E-17 124.1 9.4 114 15-131 54-173 (180)
67 2atx_A Small GTP binding prote 99.4 1.9E-13 6.5E-18 128.5 7.3 116 15-132 60-193 (194)
68 2hup_A RAS-related protein RAB 99.4 6.7E-13 2.3E-17 126.2 11.1 113 16-131 73-192 (201)
69 1f6b_A SAR1; gtpases, N-termin 99.4 4.3E-13 1.5E-17 127.3 9.6 110 20-130 68-197 (198)
70 2hjg_A GTP-binding protein ENG 99.4 2.3E-13 8E-18 145.4 8.7 121 7-132 32-165 (436)
71 1wms_A RAB-9, RAB9, RAS-relate 99.4 2.8E-13 9.6E-18 124.8 8.1 114 16-131 51-173 (177)
72 3dz8_A RAS-related protein RAB 99.4 2.8E-13 9.6E-18 127.3 8.1 112 16-130 67-184 (191)
73 3bc1_A RAS-related protein RAB 99.4 6.6E-13 2.3E-17 123.8 10.6 109 20-131 69-184 (195)
74 2ce2_X GTPase HRAS; signaling 99.4 8.6E-13 2.9E-17 119.4 11.0 112 16-130 46-163 (166)
75 1g16_A RAS-related protein SEC 99.4 3.2E-13 1.1E-17 123.2 8.3 113 16-131 47-164 (170)
76 1u8z_A RAS-related protein RAL 99.4 5.7E-13 2E-17 121.0 9.8 111 16-130 47-165 (168)
77 2fu5_C RAS-related protein RAB 99.4 2.2E-13 7.7E-18 126.5 7.2 113 16-131 52-170 (183)
78 2hxs_A RAB-26, RAS-related pro 99.4 3.4E-13 1.2E-17 124.4 8.2 112 19-133 54-174 (178)
79 1kao_A RAP2A; GTP-binding prot 99.4 4.9E-13 1.7E-17 121.3 9.1 113 15-130 45-164 (167)
80 1x3s_A RAS-related protein RAB 99.4 5.8E-13 2E-17 124.7 9.8 122 8-132 46-178 (195)
81 2h17_A ADP-ribosylation factor 99.4 4.4E-13 1.5E-17 124.9 8.8 122 8-129 51-180 (181)
82 1upt_A ARL1, ADP-ribosylation 99.4 7E-13 2.4E-17 121.3 10.1 124 8-131 37-168 (171)
83 2nzj_A GTP-binding protein REM 99.4 6E-13 2E-17 122.2 9.5 120 8-130 34-167 (175)
84 2b6h_A ADP-ribosylation factor 99.4 1.1E-12 3.7E-17 123.8 11.5 116 16-131 68-190 (192)
85 3kkq_A RAS-related protein M-R 99.4 7.2E-13 2.5E-17 123.1 9.9 113 15-130 60-180 (183)
86 2h57_A ADP-ribosylation factor 99.4 8.5E-13 2.9E-17 123.7 10.5 124 8-131 53-186 (190)
87 2gf9_A RAS-related protein RAB 99.4 2.8E-13 9.5E-18 127.0 7.1 121 8-131 53-184 (189)
88 1ky3_A GTP-binding protein YPT 99.4 1.6E-13 5.5E-18 126.7 5.2 111 18-130 55-176 (182)
89 2gf0_A GTP-binding protein DI- 99.4 1.3E-12 4.3E-17 122.9 11.4 114 17-133 52-172 (199)
90 1ega_A Protein (GTP-binding pr 99.4 1.3E-13 4.4E-18 140.3 4.8 123 7-132 37-175 (301)
91 3bwd_D RAC-like GTP-binding pr 99.4 8.5E-14 2.9E-18 128.9 3.2 115 17-133 52-182 (182)
92 2y8e_A RAB-protein 6, GH09086P 99.4 6.6E-13 2.2E-17 122.2 9.1 114 16-132 58-177 (179)
93 1mh1_A RAC1; GTP-binding, GTPa 99.4 1.9E-13 6.6E-18 126.8 5.5 118 15-134 47-182 (186)
94 2a9k_A RAS-related protein RAL 99.4 9.7E-13 3.3E-17 122.0 10.1 112 16-130 61-179 (187)
95 1mky_A Probable GTP-binding pr 99.4 7.1E-13 2.4E-17 141.8 10.3 123 7-132 30-166 (439)
96 2a5j_A RAS-related protein RAB 99.4 4.4E-13 1.5E-17 126.0 7.7 112 16-130 65-182 (191)
97 3q85_A GTP-binding protein REM 99.4 9.9E-13 3.4E-17 120.2 9.6 112 16-130 46-165 (169)
98 2j0v_A RAC-like GTP-binding pr 99.4 1.7E-13 5.7E-18 130.9 4.5 118 15-134 51-182 (212)
99 4gzl_A RAS-related C3 botulinu 99.4 2.4E-13 8.3E-18 129.5 5.5 114 15-130 72-203 (204)
100 1ksh_A ARF-like protein 2; sma 99.4 7.6E-13 2.6E-17 123.3 8.7 124 8-131 48-179 (186)
101 1z08_A RAS-related protein RAB 99.4 3.3E-13 1.1E-17 123.4 6.1 114 15-131 49-168 (170)
102 1z2a_A RAS-related protein RAB 99.4 5E-13 1.7E-17 121.7 7.3 112 16-130 49-165 (168)
103 3cph_A RAS-related protein SEC 99.4 8.3E-13 2.8E-17 125.7 9.0 113 16-131 64-181 (213)
104 2bme_A RAB4A, RAS-related prot 99.4 6.5E-13 2.2E-17 123.5 8.1 112 16-131 54-172 (186)
105 3reg_A RHO-like small GTPase; 99.4 4.4E-13 1.5E-17 126.2 6.7 115 16-132 66-188 (194)
106 2bov_A RAla, RAS-related prote 99.4 1.7E-12 5.8E-17 122.7 10.8 112 16-131 57-176 (206)
107 2f7s_A C25KG, RAS-related prot 99.4 8E-13 2.7E-17 126.6 8.6 109 20-131 83-198 (217)
108 3con_A GTPase NRAS; structural 99.4 1.4E-12 4.8E-17 122.0 9.8 112 16-130 64-181 (190)
109 2ew1_A RAS-related protein RAB 99.4 9.1E-13 3.1E-17 125.7 8.5 114 15-131 69-188 (201)
110 2yc2_C IFT27, small RAB-relate 99.4 1.1E-12 3.7E-17 124.1 9.0 113 16-131 66-191 (208)
111 2fn4_A P23, RAS-related protei 99.4 5.9E-13 2E-17 122.8 6.9 114 15-131 51-171 (181)
112 4djt_A GTP-binding nuclear pro 99.4 7.8E-13 2.7E-17 126.8 7.9 113 19-132 59-175 (218)
113 3gee_A MNME, tRNA modification 99.4 5.3E-13 1.8E-17 143.9 7.4 121 7-133 262-400 (476)
114 3tw8_B RAS-related protein RAB 99.4 4E-13 1.4E-17 123.9 5.6 113 16-131 53-170 (181)
115 1vg8_A RAS-related protein RAB 99.4 2.7E-13 9.3E-18 128.5 4.4 114 16-131 52-174 (207)
116 3t5g_A GTP-binding protein RHE 99.4 6.6E-13 2.2E-17 123.1 6.6 114 16-132 49-169 (181)
117 1z06_A RAS-related protein RAB 99.3 1.7E-12 6E-17 121.5 9.4 113 16-131 64-187 (189)
118 3clv_A RAB5 protein, putative; 99.3 7.7E-13 2.6E-17 124.1 7.0 106 21-130 93-202 (208)
119 1moz_A ARL1, ADP-ribosylation 99.3 9.9E-13 3.4E-17 121.9 7.7 120 8-130 48-178 (183)
120 2bcg_Y Protein YP2, GTP-bindin 99.3 9.8E-13 3.4E-17 124.9 7.8 114 15-131 51-170 (206)
121 3cbq_A GTP-binding protein REM 99.3 3.1E-12 1.1E-16 121.1 11.1 117 15-134 66-190 (195)
122 2fh5_B SR-beta, signal recogni 99.3 4.2E-12 1.4E-16 121.3 12.0 110 20-129 53-213 (214)
123 3ihw_A Centg3; RAS, centaurin, 99.3 3.6E-12 1.2E-16 119.4 10.7 111 13-130 59-178 (184)
124 3l0i_B RAS-related protein RAB 99.3 2.3E-13 8E-18 128.8 2.1 115 15-132 76-196 (199)
125 3q3j_B RHO-related GTP-binding 99.3 7.6E-13 2.6E-17 127.3 5.7 115 16-132 70-203 (214)
126 3oes_A GTPase rhebl1; small GT 99.3 4.7E-13 1.6E-17 126.9 4.2 113 17-132 68-187 (201)
127 3i8s_A Ferrous iron transport 99.3 3.5E-13 1.2E-17 135.2 3.4 122 7-133 31-170 (274)
128 2oil_A CATX-8, RAS-related pro 99.3 1.9E-12 6.5E-17 121.5 8.2 112 16-130 69-186 (193)
129 3iby_A Ferrous iron transport 99.3 3E-13 1E-17 134.4 2.7 118 7-129 29-164 (256)
130 2wji_A Ferrous iron transport 99.3 1.2E-12 4E-17 120.3 6.4 119 7-130 31-163 (165)
131 2gco_A H9, RHO-related GTP-bin 99.3 1.4E-12 4.9E-17 123.7 7.0 114 15-130 67-198 (201)
132 2x77_A ADP-ribosylation factor 99.3 1.4E-12 4.6E-17 122.1 6.7 115 17-131 62-183 (189)
133 2j1l_A RHO-related GTP-binding 99.3 1.6E-12 5.3E-17 124.9 7.2 115 15-131 76-208 (214)
134 2gj8_A MNME, tRNA modification 99.3 1.5E-12 5.2E-17 120.7 6.7 118 7-132 33-166 (172)
135 2o52_A RAS-related protein RAB 99.3 1.2E-12 4.1E-17 124.2 6.1 112 16-131 69-187 (200)
136 4dcu_A GTP-binding protein ENG 99.3 2.6E-12 8.9E-17 138.0 9.4 121 7-132 52-185 (456)
137 2q3h_A RAS homolog gene family 99.3 1.2E-12 4.2E-17 123.6 5.8 114 16-131 63-194 (201)
138 2iwr_A Centaurin gamma 1; ANK 99.3 7.8E-12 2.7E-16 115.4 10.8 108 15-130 48-167 (178)
139 3th5_A RAS-related C3 botulinu 99.0 2E-13 6.8E-18 129.7 0.0 115 16-130 73-203 (204)
140 2fv8_A H6, RHO-related GTP-bin 99.3 1.6E-12 5.4E-17 123.9 6.2 116 16-133 68-201 (207)
141 3cpj_B GTP-binding protein YPT 99.3 1.1E-12 3.8E-17 126.7 5.0 114 16-132 57-176 (223)
142 3c5c_A RAS-like protein 12; GD 99.3 3E-12 1E-16 120.1 7.5 111 16-130 64-184 (187)
143 1m7b_A RND3/RHOE small GTP-bin 99.3 2.1E-12 7.2E-17 120.5 5.9 113 16-130 50-181 (184)
144 1xzp_A Probable tRNA modificat 99.3 6.8E-12 2.3E-16 135.4 10.6 119 7-131 272-404 (482)
145 3b1v_A Ferrous iron uptake tra 99.3 1.1E-12 3.8E-17 131.4 4.1 121 6-132 30-164 (272)
146 3o47_A ADP-ribosylation factor 99.3 7.4E-12 2.5E-16 128.9 10.0 116 16-131 204-326 (329)
147 3lvq_E ARF-GAP with SH3 domain 99.3 9.1E-12 3.1E-16 135.0 10.9 123 7-132 351-484 (497)
148 2atv_A RERG, RAS-like estrogen 99.3 9.2E-12 3.2E-16 117.3 9.4 111 16-130 71-189 (196)
149 3a1s_A Iron(II) transport prot 99.3 1.3E-12 4.3E-17 130.0 3.2 120 7-131 33-166 (258)
150 3llu_A RAS-related GTP-binding 99.3 5.5E-12 1.9E-16 119.1 7.2 111 18-130 66-195 (196)
151 2qu8_A Putative nucleolar GTP- 99.3 8.2E-12 2.8E-16 121.0 8.6 123 8-131 58-204 (228)
152 3r7w_A Gtpase1, GTP-binding pr 99.3 6.6E-12 2.3E-16 127.9 7.9 124 8-132 33-181 (307)
153 1gwn_A RHO-related GTP-binding 99.2 4.9E-12 1.7E-16 120.9 5.9 113 16-130 71-202 (205)
154 1mky_A Probable GTP-binding pr 99.2 3E-11 1E-15 129.1 11.4 124 7-130 209-353 (439)
155 2cxx_A Probable GTP-binding pr 99.2 4.1E-12 1.4E-16 118.3 3.5 123 8-131 30-183 (190)
156 2wjg_A FEOB, ferrous iron tran 99.2 4.5E-12 1.6E-16 118.1 3.7 121 8-133 36-170 (188)
157 2wkq_A NPH1-1, RAS-related C3 99.2 8E-12 2.7E-16 127.3 4.4 116 16-133 198-331 (332)
158 3k53_A Ferrous iron transport 99.2 1.3E-11 4.3E-16 123.3 5.4 118 7-131 31-165 (271)
159 2xtp_A GTPase IMAP family memb 99.2 2.5E-11 8.5E-16 120.1 6.8 113 19-132 69-208 (260)
160 3geh_A MNME, tRNA modification 99.1 6.4E-12 2.2E-16 135.0 1.7 120 7-133 253-385 (462)
161 2g3y_A GTP-binding protein GEM 99.1 5.9E-11 2E-15 114.3 8.3 113 15-130 81-201 (211)
162 3r7w_B Gtpase2, GTP-binding pr 99.1 1.4E-10 4.9E-15 118.5 8.9 112 19-132 44-174 (331)
163 2zej_A Dardarin, leucine-rich 99.1 4.3E-11 1.5E-15 111.8 3.7 115 18-132 53-178 (184)
164 1lnz_A SPO0B-associated GTP-bi 99.1 6E-10 2.1E-14 115.1 11.6 109 21-132 206-330 (342)
165 2cjw_A GTP-binding protein GEM 99.0 2.4E-10 8.2E-15 107.8 7.7 113 15-130 50-170 (192)
166 3t5d_A Septin-7; GTP-binding p 99.0 4E-10 1.4E-14 112.6 8.9 115 17-132 61-204 (274)
167 3dpu_A RAB family protein; roc 99.0 1E-10 3.5E-15 128.1 4.8 114 18-134 95-210 (535)
168 2aka_B Dynamin-1; fusion prote 99.0 3E-10 1E-14 114.2 6.9 109 20-129 124-250 (299)
169 2e87_A Hypothetical protein PH 98.9 1.3E-09 4.5E-14 113.2 8.5 110 19-131 212-335 (357)
170 1jwy_B Dynamin A GTPase domain 98.9 5.6E-10 1.9E-14 113.3 5.2 112 20-132 130-262 (315)
171 3lxw_A GTPase IMAP family memb 98.9 2.1E-09 7.3E-14 105.8 8.2 112 17-132 66-208 (247)
172 1nrj_B SR-beta, signal recogni 98.9 1.5E-09 5.2E-14 103.7 6.5 100 19-118 53-170 (218)
173 3c5h_A Glucocorticoid receptor 98.9 4.3E-10 1.5E-14 111.2 2.3 84 44-130 162-253 (255)
174 2f9l_A RAB11B, member RAS onco 98.9 3.7E-09 1.3E-13 99.8 8.1 114 15-131 48-167 (199)
175 1cip_A Protein (guanine nucleo 98.9 1.3E-09 4.5E-14 113.0 5.2 123 8-130 179-342 (353)
176 2j69_A Bacterial dynamin-like 98.9 2.7E-09 9.3E-14 120.2 8.1 111 21-131 174-324 (695)
177 1u0l_A Probable GTPase ENGC; p 98.8 1.4E-09 4.7E-14 110.5 5.0 143 8-169 49-195 (301)
178 2qtf_A Protein HFLX, GTP-bindi 98.8 5.5E-09 1.9E-13 108.8 8.4 126 8-134 208-356 (364)
179 2p67_A LAO/AO transport system 98.8 1.1E-09 3.8E-14 113.1 2.6 106 19-131 147-260 (341)
180 1pui_A ENGB, probable GTP-bind 98.8 7.8E-09 2.7E-13 98.0 7.9 126 7-132 56-199 (210)
181 3e1y_E Eukaryotic peptide chai 98.8 8.7E-09 3E-13 98.6 7.9 87 137-229 3-90 (204)
182 1zcb_A G alpha I/13; GTP-bindi 98.8 4.4E-09 1.5E-13 109.4 5.4 123 8-130 187-351 (362)
183 1wxq_A GTP-binding protein; st 98.7 1.7E-09 5.8E-14 114.0 1.3 58 72-132 213-271 (397)
184 3p32_A Probable GTPase RV1496/ 98.7 2.9E-09 9.9E-14 110.5 2.8 106 19-131 170-283 (355)
185 2xtz_A Guanine nucleotide-bind 98.7 3.2E-09 1.1E-13 110.1 2.1 112 19-130 181-343 (354)
186 1oix_A RAS-related protein RAB 98.7 1.8E-08 6.1E-13 94.6 6.9 112 16-130 73-190 (191)
187 2x2e_A Dynamin-1; nitration, h 98.6 2.7E-08 9.3E-13 103.0 6.9 108 20-128 129-254 (353)
188 1yrb_A ATP(GTP)binding protein 98.6 3E-08 1E-12 97.5 6.8 110 20-131 108-256 (262)
189 2qag_A Septin-2, protein NEDD5 98.6 2.8E-08 9.7E-13 103.3 6.6 115 18-134 92-239 (361)
190 4fid_A G protein alpha subunit 98.6 3.3E-08 1.1E-12 101.6 6.3 123 8-130 147-326 (340)
191 2ged_A SR-beta, signal recogni 98.6 2.7E-08 9.1E-13 92.8 4.8 89 9-99 81-183 (193)
192 3ohm_A Guanine nucleotide-bind 98.6 2.3E-08 7.7E-13 102.5 4.6 123 8-130 153-316 (327)
193 1azs_C GS-alpha; complex (lyas 98.6 2.7E-08 9.2E-13 104.6 5.0 122 9-130 204-383 (402)
194 3zvr_A Dynamin-1; hydrolase, D 98.5 1.2E-07 4.1E-12 106.8 8.1 106 21-128 150-274 (772)
195 3lxx_A GTPase IMAP family memb 98.5 2.6E-07 8.8E-12 89.9 8.3 108 19-130 76-212 (239)
196 2qpt_A EH domain-containing pr 98.5 1.5E-07 5.2E-12 103.1 7.2 224 22-267 155-408 (550)
197 1puj_A YLQF, conserved hypothe 98.5 2.8E-07 9.7E-12 92.5 8.6 102 25-131 3-105 (282)
198 2yv5_A YJEQ protein; hydrolase 98.5 3.8E-08 1.3E-12 99.8 2.1 111 17-127 46-164 (302)
199 2wsm_A Hydrogenase expression/ 98.5 4.4E-08 1.5E-12 93.7 2.2 105 19-132 107-214 (221)
200 3l82_B F-box only protein 4; T 98.4 2.8E-07 9.5E-12 87.8 7.5 100 30-132 111-223 (227)
201 3t34_A Dynamin-related protein 98.4 3.9E-07 1.3E-11 94.5 7.1 106 20-126 135-255 (360)
202 1h65_A Chloroplast outer envel 98.4 1.7E-06 5.7E-11 85.9 11.2 82 7-88 68-169 (270)
203 1udx_A The GTP-binding protein 98.3 1.5E-06 5E-11 91.9 10.8 109 20-132 204-325 (416)
204 2www_A Methylmalonic aciduria 98.3 2E-07 6.9E-12 96.4 4.1 106 19-131 165-278 (349)
205 3def_A T7I23.11 protein; chlor 98.3 6E-07 2.1E-11 88.8 5.8 80 7-86 65-164 (262)
206 3l2o_B F-box only protein 4; s 98.2 1.8E-06 6.1E-11 86.1 7.8 101 29-132 195-308 (312)
207 3h2y_A GTPase family protein; 98.1 2.1E-06 7.1E-11 89.4 6.6 99 30-130 55-158 (368)
208 3ec1_A YQEH GTPase; atnos1, at 98.1 3.2E-06 1.1E-10 88.0 7.8 103 25-130 53-160 (369)
209 3cnl_A YLQF, putative uncharac 98.0 1.4E-06 4.8E-11 86.4 2.5 94 29-130 5-99 (262)
210 2qnr_A Septin-2, protein NEDD5 98.0 4.5E-06 1.5E-10 84.5 5.9 112 18-131 73-213 (301)
211 2j37_W Signal recognition part 98.0 9.6E-06 3.3E-10 87.6 8.2 106 19-129 182-310 (504)
212 2qag_C Septin-7; cell cycle, c 97.9 1.3E-05 4.5E-10 84.7 6.5 111 20-131 87-226 (418)
213 4a9a_A Ribosome-interacting GT 97.8 3.5E-05 1.2E-09 80.2 7.5 79 7-86 100-195 (376)
214 2qm8_A GTPase/ATPase; G protei 97.7 4.7E-05 1.6E-09 78.2 6.7 106 19-131 146-260 (337)
215 1jal_A YCHF protein; nucleotid 97.7 4.3E-05 1.5E-09 79.1 6.1 36 21-56 66-108 (363)
216 1t9h_A YLOQ, probable GTPase E 97.6 3.9E-05 1.3E-09 77.7 4.5 114 40-168 82-198 (307)
217 2dby_A GTP-binding protein; GD 97.4 0.00016 5.5E-09 75.1 6.7 37 20-56 68-111 (368)
218 2hf9_A Probable hydrogenase ni 97.4 5.2E-05 1.8E-09 72.3 2.5 100 22-130 120-222 (226)
219 1xe1_A Hypothetical protein PF 97.4 0.00033 1.1E-08 59.8 6.9 76 139-226 33-113 (116)
220 2v3c_C SRP54, signal recogniti 97.2 0.00053 1.8E-08 72.7 7.8 109 19-132 179-311 (432)
221 1d1n_A Initiation factor 2; be 97.1 0.0015 5E-08 54.3 7.6 82 142-225 8-89 (99)
222 2rcn_A Probable GTPase ENGC; Y 97.0 0.00078 2.7E-08 69.5 6.1 110 42-168 128-240 (358)
223 3h2y_A GTPase family protein; 96.8 6.6E-05 2.3E-09 78.0 -3.4 114 7-123 195-321 (368)
224 3ec1_A YQEH GTPase; atnos1, at 96.7 5.8E-05 2E-09 78.5 -4.9 113 7-122 196-321 (369)
225 2crv_A IF-2MT, translation ini 96.6 0.0056 1.9E-07 52.6 7.7 83 141-225 11-97 (120)
226 1j8m_F SRP54, signal recogniti 96.5 0.0079 2.7E-07 60.4 9.4 94 19-122 179-281 (297)
227 3dm5_A SRP54, signal recogniti 96.4 0.0091 3.1E-07 63.2 9.6 94 20-122 182-281 (443)
228 3kl4_A SRP54, signal recogniti 96.1 0.012 4.1E-07 62.2 8.6 95 19-122 178-280 (433)
229 4dzz_A Plasmid partitioning pr 95.9 0.019 6.5E-07 53.3 8.0 80 20-103 75-159 (206)
230 3cwq_A Para family chromosome 95.0 0.038 1.3E-06 52.1 6.8 82 19-103 66-150 (209)
231 1zo1_I IF2, translation initia 95.0 0.034 1.2E-06 59.8 7.2 104 121-226 386-492 (501)
232 2ph1_A Nucleotide-binding prot 94.9 0.05 1.7E-06 53.0 7.6 67 19-85 127-194 (262)
233 3izy_P Translation initiation 94.7 0.11 3.6E-06 56.5 10.2 102 121-224 425-533 (537)
234 2ohf_A Protein OLA1, GTP-bindi 94.7 0.019 6.3E-07 60.0 4.0 36 21-56 86-128 (396)
235 2qag_B Septin-6, protein NEDD5 94.5 0.073 2.5E-06 56.0 7.9 67 47-114 151-218 (427)
236 1wcv_1 SOJ, segregation protei 94.4 0.088 3E-06 51.0 8.0 83 19-103 110-199 (257)
237 1tq4_A IIGP1, interferon-induc 94.2 0.16 5.5E-06 53.2 9.9 109 22-132 121-253 (413)
238 3lh2_S 4E10_1VI7A_S0_002_N (T8 94.1 0.029 9.9E-07 44.2 3.0 63 355-420 8-70 (76)
239 1hyq_A MIND, cell division inh 93.8 0.071 2.4E-06 51.6 5.9 81 20-104 110-191 (263)
240 1g3q_A MIND ATPase, cell divis 93.7 0.079 2.7E-06 50.3 6.0 81 19-103 110-191 (237)
241 2wbm_A MTHSBDS, ribosome matur 93.7 0.16 5.5E-06 49.2 8.0 65 355-421 185-249 (252)
242 2xxa_A Signal recognition part 93.4 0.079 2.7E-06 55.9 5.7 65 19-86 182-253 (433)
243 2oze_A ORF delta'; para, walke 93.3 0.13 4.5E-06 50.8 7.0 83 19-103 153-242 (298)
244 1t95_A Hypothetical protein AF 93.1 0.15 5E-06 49.1 6.5 65 355-421 170-234 (240)
245 3kjh_A CO dehydrogenase/acetyl 92.5 0.093 3.2E-06 49.9 4.4 77 19-102 130-207 (254)
246 3bfv_A CAPA1, CAPB2, membrane 92.2 0.19 6.4E-06 49.4 6.3 67 20-87 191-258 (271)
247 1byi_A Dethiobiotin synthase; 91.9 0.51 1.7E-05 44.1 8.7 85 19-103 107-197 (224)
248 3k9g_A PF-32 protein; ssgcid, 91.7 0.28 9.4E-06 47.5 6.8 78 19-99 143-222 (267)
249 2cve_A Hypothetical protein TT 91.5 0.41 1.4E-05 44.5 7.2 67 351-420 124-190 (191)
250 3ea0_A ATPase, para family; al 90.7 0.28 9.7E-06 46.5 5.7 79 20-103 118-199 (245)
251 1vi7_A Hypothetical protein YI 90.0 0.5 1.7E-05 44.8 6.5 69 350-421 135-203 (217)
252 3cio_A ETK, tyrosine-protein k 90.0 0.46 1.6E-05 47.3 6.7 66 20-86 213-279 (299)
253 2xj4_A MIPZ; replication, cell 89.7 0.14 4.9E-06 50.4 2.7 78 20-99 103-205 (286)
254 3q9l_A Septum site-determining 89.4 0.27 9.1E-06 47.2 4.3 64 20-85 113-185 (260)
255 3la6_A Tyrosine-protein kinase 88.6 0.72 2.5E-05 45.6 6.9 67 20-87 201-268 (286)
256 2kdo_A Ribosome maturation pro 87.9 0.15 5.3E-06 49.4 1.4 64 355-421 174-237 (252)
257 3end_A Light-independent proto 87.1 0.63 2.1E-05 46.1 5.4 79 19-103 155-238 (307)
258 1zu4_A FTSY; GTPase, signal re 86.8 0.91 3.1E-05 45.7 6.4 94 19-122 190-296 (320)
259 1g7s_A Translation initiation 86.7 1.2 4E-05 48.9 7.7 75 148-228 473-550 (594)
260 2ffh_A Protein (FFH); SRP54, s 85.9 0.82 2.8E-05 48.0 5.7 80 19-103 179-265 (425)
261 1ni3_A YCHF GTPase, YCHF GTP-b 85.9 0.44 1.5E-05 49.5 3.6 36 21-56 85-127 (392)
262 3of5_A Dethiobiotin synthetase 84.6 2.5 8.7E-05 40.1 8.1 90 19-110 109-206 (228)
263 3ez9_A Para; DNA binding, wing 84.3 1 3.6E-05 46.5 5.6 82 19-103 246-339 (403)
264 1ls1_A Signal recognition part 80.9 2 6.8E-05 42.6 5.9 92 20-121 180-278 (295)
265 3e70_C DPA, signal recognition 79.6 2.7 9.4E-05 42.3 6.5 92 21-122 212-310 (328)
266 1cp2_A CP2, nitrogenase iron p 79.0 1.8 6.1E-05 41.6 4.8 83 19-103 114-202 (269)
267 2px0_A Flagellar biosynthesis 78.9 3.8 0.00013 40.5 7.2 90 19-119 181-278 (296)
268 3ug7_A Arsenical pump-driving 77.5 5.9 0.0002 40.0 8.3 85 45-130 237-332 (349)
269 2afh_E Nitrogenase iron protei 76.9 2.7 9.3E-05 41.0 5.4 83 19-103 117-205 (289)
270 1vma_A Cell division protein F 76.9 2.7 9.2E-05 41.9 5.4 92 20-121 186-290 (306)
271 3sop_A Neuronal-specific septi 76.6 1.9 6.6E-05 42.1 4.2 42 45-87 112-154 (270)
272 2f62_A Nucleoside 2-deoxyribos 75.4 5.3 0.00018 35.9 6.4 87 39-132 62-160 (161)
273 3ez2_A Plasmid partition prote 73.6 2.8 9.5E-05 43.1 4.7 82 19-103 243-336 (398)
274 3zq6_A Putative arsenical pump 64.5 7.5 0.00026 38.7 5.5 78 46-123 223-311 (324)
275 3szr_A Interferon-induced GTP- 63.8 9.9 0.00034 41.5 6.7 67 22-88 148-229 (608)
276 1f5n_A Interferon-induced guan 61.7 3.6 0.00012 44.9 2.6 54 19-72 89-148 (592)
277 3pg5_A Uncharacterized protein 58.5 6.7 0.00023 39.8 3.9 35 20-56 153-187 (361)
278 1ihu_A Arsenical pump-driving 56.2 4.9 0.00017 43.7 2.5 43 44-86 489-532 (589)
279 1puj_A YLQF, conserved hypothe 52.6 4.2 0.00014 39.9 1.2 27 7-33 149-177 (282)
280 2obn_A Hypothetical protein; s 51.4 37 0.0013 34.4 7.9 80 43-128 252-348 (349)
281 3ehd_A Uncharacterized conserv 50.2 27 0.00093 31.3 6.0 51 40-91 65-115 (162)
282 3fgn_A Dethiobiotin synthetase 49.0 29 0.001 33.3 6.5 80 19-100 125-214 (251)
283 2yhs_A FTSY, cell division pro 47.7 24 0.00081 37.6 6.1 93 20-122 375-480 (503)
284 2woj_A ATPase GET3; tail-ancho 45.8 22 0.00074 35.9 5.3 41 44-84 234-275 (354)
285 2woo_A ATPase GET3; tail-ancho 45.5 48 0.0016 32.9 7.8 40 46-85 222-262 (329)
286 3io3_A DEHA2D07832P; chaperone 44.1 54 0.0018 33.0 7.9 42 46-87 232-274 (348)
287 3qxc_A Dethiobiotin synthetase 42.5 35 0.0012 32.5 5.9 66 19-86 130-202 (242)
288 3iez_A RAS GTPase-activating-l 40.6 11 0.00037 31.9 1.7 35 512-546 79-113 (114)
289 1nkw_Y 50S ribosomal protein L 40.5 22 0.00075 27.5 3.3 39 468-506 2-40 (73)
290 1ihu_A Arsenical pump-driving 40.5 11 0.00038 40.7 2.3 41 46-86 199-240 (589)
291 4he6_A Peptidase family U32; u 40.2 44 0.0015 26.3 5.3 56 163-224 26-85 (89)
292 3cnl_A YLQF, putative uncharac 36.8 4.8 0.00017 39.0 -1.3 28 7-34 128-157 (262)
293 2khz_A C-MYC-responsive protei 36.1 49 0.0017 29.4 5.5 43 39-84 72-114 (165)
294 1rj9_A FTSY, signal recognitio 34.3 63 0.0022 31.7 6.5 92 21-122 185-289 (304)
295 1x0h_A P195, RAS GTPase-activa 33.4 15 0.00052 30.8 1.5 34 512-545 67-100 (112)
296 4fyk_A Deoxyribonucleoside 5'- 32.5 57 0.002 28.8 5.2 40 39-81 63-102 (152)
297 3fkq_A NTRC-like two-domain pr 31.9 20 0.00068 36.3 2.3 36 19-56 258-293 (373)
298 1s2d_A Purine trans deoxyribos 31.6 83 0.0028 28.1 6.2 39 40-79 77-115 (167)
299 3isu_A RAS GTPase-activating-l 29.9 21 0.00072 30.4 1.7 34 512-545 82-115 (121)
300 2f9h_A PTS system, IIA compone 28.0 75 0.0026 27.3 4.9 23 164-188 52-74 (129)
301 3iqw_A Tail-anchored protein t 27.5 1.9E+02 0.0066 28.6 8.8 41 46-86 223-264 (334)
302 3v7e_A Ribosome-associated pro 27.3 59 0.002 25.3 3.9 48 36-85 17-65 (82)
303 3do6_A Formate--tetrahydrofola 23.8 76 0.0026 33.5 4.9 68 63-131 350-417 (543)
304 2aif_A Ribosomal protein L7A; 22.4 1E+02 0.0035 26.4 4.9 81 37-130 48-130 (135)
305 3j21_Z 50S ribosomal protein L 22.2 1.4E+02 0.0047 23.9 5.4 48 36-85 21-70 (99)
306 3imk_A Putative molybdenum car 22.1 4.1E+02 0.014 23.4 8.6 52 24-78 54-105 (158)
307 2p8q_B Snurportin-1; heat repe 21.3 36 0.0012 23.1 1.3 14 511-524 18-31 (40)
308 2ale_A SNU13, NHP2/L7AE family 21.1 96 0.0033 26.6 4.4 82 36-129 38-120 (134)
309 1f8y_A Nucleoside 2-deoxyribos 20.7 1.1E+02 0.0037 27.0 4.7 42 40-82 74-115 (157)
310 2xzm_U Ribosomal protein L7AE 20.1 94 0.0032 26.4 4.1 50 36-85 30-79 (126)
No 1
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.7e-144 Score=1194.66 Aligned_cols=529 Identities=51% Similarity=0.904 Sum_probs=463.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
++..+.++|||||||.||..++.++++.||++|+|||+++|++.||..+|..+...++|+|+|+||+|++++++++..++
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~e 148 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQ 148 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHH
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEe
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSA 176 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~ 176 (547)
+.+.+++.+.+++++||++|.|+++++++|++.+|+|..+.++|++++||++++|++.|+++++||++|+|++||.|.++
T Consensus 149 l~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~ 228 (600)
T 2ywe_A 149 IEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLM 228 (600)
T ss_dssp HHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEET
T ss_pred HHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEec
Confidence 99999887778999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCC-CCCCCCCCCCcceEEeeeccCCCCc
Q 008991 177 ATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSI-VEPLPGFKPAKHMVFSGLYPADGSD 255 (547)
Q Consensus 177 ~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~-~~~l~~~~~~~p~v~~~i~p~~~~d 255 (547)
++++.+++.+++.+++++.+++++.|||++++++|++++.++++||||+..+.+ ..++|+++.++|+++++++|.+..|
T Consensus 229 ~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d 308 (600)
T 2ywe_A 229 STGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTT 308 (600)
T ss_dssp TTTEEEECCEEEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCCEEEEEEECTTCC
T ss_pred cccceEeeecccccCCCceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcEEEEEeecccccc
Confidence 999999999999999988899999999999998899889999999999988744 2689999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEee-CCCEEEEe
Q 008991 256 FEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYS-DGSKAEVQ 334 (547)
Q Consensus 256 ~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~-~g~~~~~~ 334 (547)
+++|++||+||++|||+|+|+++++.++|.||+|||+|+|||||++|||+||||+++++++|+|+||||++ +|++..++
T Consensus 309 ~~~l~~aL~kL~~eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~V~yreti~~~g~~~~~~ 388 (600)
T 2ywe_A 309 YEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVR 388 (600)
T ss_dssp HHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECEEEEETTCSSCEEES
T ss_pred HHHHHHHHHHHhhhCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeeeEEEEEEecCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccC
Q 008991 335 NPASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLT 414 (547)
Q Consensus 335 ~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T 414 (547)
||++||+. ...++.+||||++++|.+|+||+|+||++|++|||++.+|++.+++++.|+|++|++||+.||+++|||+|
T Consensus 389 ~p~~~p~~-~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T 467 (600)
T 2ywe_A 389 NPMDFPDN-AGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSIS 467 (600)
T ss_dssp SGGGSCSC-GGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ChhhCCCC-CcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcC
Confidence 99999983 15678999999999999999999999999999999999999987789999999999999559999999999
Q ss_pred cCeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeeeCCEEEEEecc
Q 008991 415 SGYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARETI 494 (547)
Q Consensus 415 ~G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~~~~~~~~~~i 494 (547)
+|||+|+|+|+||+++|++|++|++||++|||||+|+||++|+++||++|+|||++||||||+|||||+||+||||||||
T Consensus 468 ~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qa~~~~~~~a~~~~ 547 (600)
T 2ywe_A 468 RGFASYDYEFIGYRPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRETIPRQLFEVHIQVAKGGKVIASERI 547 (600)
T ss_dssp TTCCEEEEEEEEEEECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHHHSCCCSSCEEEEEEETTEEEEEEEE
T ss_pred CCeEEEEEEeccceEccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHhhCCccccceeeehhhCCEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhccccCchhhhhhhHHHHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 495 SAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 495 ~~~~k~v~~k~~ggd~~rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
+|||||||||||||||||||||||||||||||||++|||+||||||+++|+.
T Consensus 548 ~~~~k~v~~k~~~~d~~r~~kll~~q~~gk~~~~~~~~v~~~~~~f~~~~~~ 599 (600)
T 2ywe_A 548 KPLRANVTAKCYGGDVTRKKKLLENQKEGKKRMKQFGKVQLPQEAFLSVLKV 599 (600)
T ss_dssp CCCC------------------------------------------------
T ss_pred chhhcchhhcccCCChHHHHHHHHHHhhhhHhHhhcCCEecCHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999985
No 2
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.4e-142 Score=1178.41 Aligned_cols=527 Identities=49% Similarity=0.855 Sum_probs=470.6
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+++.+.++|||||||.||..++.++++.||++|+|+|+++|++.||..+|..+...++|+|+|+||+|++++++++..++
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~e 146 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEE 146 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHH
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEe
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSA 176 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~ 176 (547)
+.+.+++.+.+++++||++|.|+++++++|.+.+|+|..+.++|++++||++++|++.|+++++||++|+|++||.+.++
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~ 226 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM 226 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEET
T ss_pred HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEec
Confidence 99999988778999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCC-CCCCCCCCCCcceEEeeeccCCCCc
Q 008991 177 ATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSI-VEPLPGFKPAKHMVFSGLYPADGSD 255 (547)
Q Consensus 177 ~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~-~~~l~~~~~~~p~v~~~i~p~~~~d 255 (547)
++++.+++.+++.+.++..+++++.|||++++++|++++.++++||||++.+.+ ..++|+++.++|+++++++|.+..|
T Consensus 227 ~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d 306 (599)
T 3cb4_D 227 STGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDD 306 (599)
T ss_dssp TTCCEEECCEEEEESSSEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEEEEEEESSGGG
T ss_pred cccceeEEeeeeeccCCceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceEEEEEecCccC
Confidence 999999999999999888899999999999998899888999999999987743 3689999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeC
Q 008991 256 FEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQN 335 (547)
Q Consensus 256 ~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~ 335 (547)
+++|.+||++|++|||+|.++.+++.+++.||||||||+|||||++|||+||||+++++++|+|+||||+++|....|+|
T Consensus 307 ~~~l~~aL~kL~~eD~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V~yreti~~g~~~~~~~ 386 (599)
T 3cb4_D 307 YEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDS 386 (599)
T ss_dssp HHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEECEEEEESSSCEEEESS
T ss_pred HHHHHHHHHHHHhhCcEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeEEEEEEecCCceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCc
Q 008991 336 PASLPSNPKKRVTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTS 415 (547)
Q Consensus 336 p~~fp~~~~~~i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~ 415 (547)
|++||+. ..++.+||||++++|.+|+||+|+||++|++|||++++|++.+ +++.|+|++|++||+.||+++|||+|+
T Consensus 387 p~~~p~~--~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~l~s~T~ 463 (599)
T 3cb4_D 387 PSKLPAV--NNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG-NQVALTYEIPMAEVVLDFFDRLKSTSR 463 (599)
T ss_dssp GGGSCCG--GGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT-TEEEEEEEEEHHHHHTTTHHHHHHHTT
T ss_pred hhhCCCc--cccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC-CeEEEEEEecHHHHHHHHHHhhhhcCC
Confidence 9999974 5678999999999999999999999999999999999999976 599999999999995599999999999
Q ss_pred CeEEEEeEeccceeccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeeeCCEEEEEeccc
Q 008991 416 GYASFDYEDSEYQQADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAIGSKVIARETIS 495 (547)
Q Consensus 416 G~as~~~~~~~y~~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~~~~~~~~~~i~ 495 (547)
|||+|+|+|+||+++|++|++|++||++|||||+||||++|+++||++|+|||++||||||+|||||+||+||||||||+
T Consensus 464 G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 543 (599)
T 3cb4_D 464 GYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVK 543 (599)
T ss_dssp SCCEEEEEEEEEEECCEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHSCSCSSCEEEEEEETTEEEEEEEEC
T ss_pred cEEEEEEEecCceEecccccccccCCcEecccceeccHHHHHHHHHHHHHHHHhhCChhhccchhhhhhCCEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccCchhhhhhhHHHHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 496 AMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 496 ~~~k~v~~k~~ggd~~rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
|||||||||||||||||||||||||||||||||++|||+||||||+++|+.
T Consensus 544 ~~~k~v~~~~~~~d~~r~~kl~~~q~~gk~~~~~~~~~~~~~~~~~~~~~~ 594 (599)
T 3cb4_D 544 QLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHV 594 (599)
T ss_dssp CCCTTCCCCCCC---------------------------------------
T ss_pred hhhcchhhcccCCChHHHHHHHHHHhhhhHhHhhcCCEecCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999985
No 3
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.3e-76 Score=669.20 Aligned_cols=401 Identities=26% Similarity=0.390 Sum_probs=354.4
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
++|.+||||||||+||..|+.++|+.||+||+||||.+|+++||+.+|++|.+.++|.++|+||||++.+++..+.++++
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~ 162 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIK 162 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHH
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhcCCC--------------------------------------------------------------------------
Q 008991 99 SMFDLD-------------------------------------------------------------------------- 104 (547)
Q Consensus 99 ~~l~~~-------------------------------------------------------------------------- 104 (547)
+.++..
T Consensus 163 ~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~ 242 (709)
T 4fn5_A 163 KRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLE 242 (709)
T ss_dssp HHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred hhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 766421
Q ss_pred ---------------------CccceeccccccccccccHHHHHhhCCCCC--------------------ccccCceeE
Q 008991 105 ---------------------PSEALLTSAKTGQGLEHVLPAVIERIPPPR--------------------GIINSSLRM 143 (547)
Q Consensus 105 ---------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~--------------------~~~~~p~~~ 143 (547)
..|+++.||.++.|+..||+.+++++|+|. .+.++||.+
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~ 322 (709)
T 4fn5_A 243 EGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSS 322 (709)
T ss_dssp HSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEE
T ss_pred cCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceE
Confidence 014688999999999999999999999984 356789999
Q ss_pred EEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccC
Q 008991 144 LLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGD 222 (547)
Q Consensus 144 ~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gd 222 (547)
+||++++|++.|+++++||+||+|++||+|++...++..++.++..+.+ ++.+++++.||||+++. |+ +++.+||
T Consensus 323 ~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~-Gl---~~~~~gd 398 (709)
T 4fn5_A 323 LAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALI-GM---KDVTTGD 398 (709)
T ss_dssp EEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEEC-SC---SSCCTTC
T ss_pred EEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeec-CC---CcCccCC
Confidence 9999999999999999999999999999999999999999999988887 57899999999999875 66 6789999
Q ss_pred cccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHH
Q 008991 223 TLYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQ 302 (547)
Q Consensus 223 tl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~e 302 (547)
||++.+.+ ..++.+.+++|+++++++|.+++|+++|.++|++|+++||+|+++.+++ +|+.+++| +|+|||||+++
T Consensus 399 Tl~~~~~~-~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~ee--tge~vi~g-~GELHLei~l~ 474 (709)
T 4fn5_A 399 TLCSIEKP-IILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEE--SGQTIISG-MGELHLDIIVD 474 (709)
T ss_dssp EEECSSSC-CBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETT--TTEEEEEE-SCHHHHHHHHH
T ss_pred EecCCCcc-ccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecC--CCcEEEEE-ECHHHHHHHHH
Confidence 99988754 6778888899999999999999999999999999999999999988643 58999999 59999999999
Q ss_pred HHHHHhCCeeEEecCceeeEEEeeCCCE-------------------------------------EEEeC----------
Q 008991 303 RLEQEYGAHVISTVPTVPYIFEYSDGSK-------------------------------------AEVQN---------- 335 (547)
Q Consensus 303 rL~~e~g~~v~~t~P~V~Yre~~~~g~~-------------------------------------~~~~~---------- 335 (547)
||++|||+++.+++|.|+||||+++... ..+.+
T Consensus 475 rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~ 554 (709)
T 4fn5_A 475 RMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKE 554 (709)
T ss_dssp HHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGG
T ss_pred HHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHH
Confidence 9999999999999999999999965221 00110
Q ss_pred -----------------CCCCCCC---------------c---ccc--------------cceeecceEEEEEEcCCCcH
Q 008991 336 -----------------PASLPSN---------------P---KKR--------------VTACWEPTVVATIIIPSEYV 366 (547)
Q Consensus 336 -----------------p~~fp~~---------------~---~~~--------------i~~llEP~~~~~I~vP~e~~ 366 (547)
.++||.- + .|+ -++|||||+.++|.||++|+
T Consensus 555 ~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~ 634 (709)
T 4fn5_A 555 YIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYM 634 (709)
T ss_dssp GHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTH
T ss_pred HHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHH
Confidence 1466651 1 011 13799999999999999999
Q ss_pred HHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEecccee
Q 008991 367 GSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQ 429 (547)
Q Consensus 367 G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~ 429 (547)
|+||++|++|||++.+++..+ +..+|+|++|++|++ +|.++|||+|+|+|+|+|+|+||++
T Consensus 635 G~V~~~L~~RRG~i~~~~~~~-~~~~i~a~vPv~E~~-gf~~~LRs~T~G~a~~~~~F~~y~~ 695 (709)
T 4fn5_A 635 GDVMGDLNRRRGLIQGMEDTV-SGKVIRAEVPLGEMF-GYATDVRSMSQGRASYSMEFSKYAE 695 (709)
T ss_dssp HHHHHHHGGGTCEEEEEEECS-SEEEEEEEEESGGGT-THHHHHHHHTTTCCEEECCEEEEEE
T ss_pred HHHHHHHHhcCCEEeceEecC-CCEEEEEEecHHHhh-CHHHHHHhhCCCeEEEEEEECCccc
Confidence 999999999999999999865 466799999999997 9999999999999999999999997
No 4
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3e-73 Score=641.78 Aligned_cols=402 Identities=25% Similarity=0.349 Sum_probs=357.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
+.+.++|||||||.||..++.++++.||++|+|+|+++|++.||..+|..+...++|+++|+||+|+..++.+++.++++
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~ 159 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIK 159 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999988888888877
Q ss_pred HhcCCC--------------------------------------------------------------------------
Q 008991 99 SMFDLD-------------------------------------------------------------------------- 104 (547)
Q Consensus 99 ~~l~~~-------------------------------------------------------------------------- 104 (547)
+.++..
T Consensus 160 ~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~ 239 (704)
T 2rdo_7 160 TRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLG 239 (704)
T ss_pred HHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhc
Confidence 664321
Q ss_pred ---------------------CccceeccccccccccccHHHHHhhCCCCCc--------------------cccCceeE
Q 008991 105 ---------------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRG--------------------IINSSLRM 143 (547)
Q Consensus 105 ---------------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~--------------------~~~~p~~~ 143 (547)
..|++++||++|.|++.||++|++++|+|.. +.++||.+
T Consensus 240 ~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 319 (704)
T 2rdo_7 240 GEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSA 319 (704)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEE
Confidence 0258899999999999999999999999864 25789999
Q ss_pred EEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccC
Q 008991 144 LLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGD 222 (547)
Q Consensus 144 ~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gd 222 (547)
+||++++|+++|+++++||++|+|++||+|++.++++..+|.+++.+++ ++.+++++.||||+++. |+ +++++||
T Consensus 320 ~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~-gl---~~~~~Gd 395 (704)
T 2rdo_7 320 LAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAI-GL---KDVTTGD 395 (704)
T ss_pred EEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEe-Cc---ccCccCC
Confidence 9999999999999999999999999999999999999999999999988 57899999999999987 66 5679999
Q ss_pred cccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHH
Q 008991 223 TLYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQ 302 (547)
Q Consensus 223 tl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~e 302 (547)
||++.+.+ .++++++.+.|+++++++|.++.|+++|.++|++|++|||+|+++.++. +|+.+..| +|+|||||+++
T Consensus 396 Tl~~~~~~-~~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~e--tge~il~g-~GelhLei~~~ 471 (704)
T 2rdo_7 396 TLCDPDAP-IILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEE--SNQTIIAG-MGELHLDIIVD 471 (704)
T ss_pred EEeCCCcc-cccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCC--CCcEEEEe-CCHHHHHHHHH
Confidence 99987644 6788899999999999999999999999999999999999999998754 47888888 79999999999
Q ss_pred HHHHHhCCeeEEecCceeeEEEeeCCC-E-------------------EEEeC---------------------------
Q 008991 303 RLEQEYGAHVISTVPTVPYIFEYSDGS-K-------------------AEVQN--------------------------- 335 (547)
Q Consensus 303 rL~~e~g~~v~~t~P~V~Yre~~~~g~-~-------------------~~~~~--------------------------- 335 (547)
||++|||+++.+++|+|+||||+++.. . ..++.
T Consensus 472 rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~~p~~~~~ 551 (704)
T 2rdo_7 472 RMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIP 551 (704)
T ss_pred HHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEeccCCcCcHHHHH
Confidence 999999999999999999999986432 0 01110
Q ss_pred --------------CCCCCC-Ccc-----------------cc--------------cceeecceEEEEEEcCCCcHHHH
Q 008991 336 --------------PASLPS-NPK-----------------KR--------------VTACWEPTVVATIIIPSEYVGSV 369 (547)
Q Consensus 336 --------------p~~fp~-~~~-----------------~~--------------i~~llEP~~~~~I~vP~e~~G~v 369 (547)
.++||+ |.. |+ -+.||||||+++|.||++|+|+|
T Consensus 552 ~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v 631 (704)
T 2rdo_7 552 AVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDV 631 (704)
T ss_pred HHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHH
Confidence 245665 100 11 14899999999999999999999
Q ss_pred HHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 370 ITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 370 ~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|++|++|||+++++++.+ +++.|+|++|++|++ +|.++|||+|+|+|+|+|+|+||++.
T Consensus 632 ~~~l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~~-gy~~~Lrs~T~G~~~~~~~f~~y~~~ 690 (704)
T 2rdo_7 632 IGDLSRRRGMLKGQESEV-TGVKIHAEVPLSEMF-GYATQLRSLTKGRASYTMEFLKYDEA 690 (704)
T ss_pred HHHHHhCCceEeCceecC-CeEEEEEEecHHHHh-hHHHHhHhhcCCceEEEEEeCcceEC
Confidence 999999999999999865 689999999999997 89999999999999999999999983
No 5
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.3e-76 Score=663.18 Aligned_cols=427 Identities=21% Similarity=0.250 Sum_probs=364.6
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
..+++.+||||||||.||..++.++++.||+||+||||.+|+++||+.+|++|.+.++|.|+|+||||++.+++..+.++
T Consensus 63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~ 142 (638)
T 3j25_A 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQD 142 (638)
T ss_dssp BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHH
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC-------------------------------------------------------------Cccceeccccc
Q 008991 97 LKSMFDLD-------------------------------------------------------------PSEALLTSAKT 115 (547)
Q Consensus 97 i~~~l~~~-------------------------------------------------------------~~~vi~~SAk~ 115 (547)
+++.++.. ..|++++||++
T Consensus 143 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~ 222 (638)
T 3j25_A 143 IKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKS 222 (638)
T ss_dssp HHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTT
T ss_pred HHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccccccc
Confidence 88877531 13688999999
Q ss_pred cccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-Cc
Q 008991 116 GQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-EL 194 (547)
Q Consensus 116 g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~ 194 (547)
|.||+.||+++.+++|+|..+.+.||.++||++++|+++|+++++||+||+|++||.|++...+ +.++.++..+.+ ++
T Consensus 223 ~~Gv~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~ 301 (638)
T 3j25_A 223 NIGIDNLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGEL 301 (638)
T ss_dssp CCSHHHHHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCB
T ss_pred CCCchhHhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc-ceeEEeeeccccccc
Confidence 9999999999999999999988999999999999999999999999999999999999876544 457777766665 67
Q ss_pred ccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeE
Q 008991 195 TPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVS 274 (547)
Q Consensus 195 ~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~ 274 (547)
.+++++.||||+++. | ..+++|||+++.... ..++.+..|+|+++++++|.+++|+++|.++|++|++|||+++
T Consensus 302 ~~v~~a~aGdIv~i~-g----~~~~~~~tl~d~~~~-~~~~~i~~p~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~ 375 (638)
T 3j25_A 302 CKIDRAYSGEIVILQ-N----EFLKLNSVLGDTKLL-PQRKKIENPHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLR 375 (638)
T ss_dssp SCCCTTBCCCCSCCC-S----SSCSSEECSSSSSSG-GGCSCCCCCCCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCC
T ss_pred ccccccccceEEEEe-c----cccccCceecCCCCc-ccccCccCCCccceeeeccCChHHHHHHHHHHHHHhhcCCeeE
Confidence 899999999998764 3 467889999887643 5567788899999999999999999999999999999999999
Q ss_pred EEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEE-----------------------
Q 008991 275 VTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKA----------------------- 331 (547)
Q Consensus 275 v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~----------------------- 331 (547)
++.++++ |+ ++++++|+|||||+++||++|||+++.+++|+|+||||+++..+.
T Consensus 376 v~~~~et--~e-~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~ 452 (638)
T 3j25_A 376 YYVDSTT--HE-IILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLP 452 (638)
T ss_dssp CCCCSSS--SC-CCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCC
T ss_pred EEecCCC--ce-EEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEeccc
Confidence 9988763 44 667779999999999999999999999999999999998753221
Q ss_pred -----EEe--------------------------CCCCCCC-Cc-----------------ccc--------------cc
Q 008991 332 -----EVQ--------------------------NPASLPS-NP-----------------KKR--------------VT 348 (547)
Q Consensus 332 -----~~~--------------------------~p~~fp~-~~-----------------~~~--------------i~ 348 (547)
.+. .+++||. |. .|+ -+
T Consensus 453 ~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p 532 (638)
T 3j25_A 453 LGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGT 532 (638)
T ss_dssp SSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCcEEEeeeecccchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 010 1456775 11 011 13
Q ss_pred eeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccce
Q 008991 349 ACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQ 428 (547)
Q Consensus 349 ~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~ 428 (547)
.||||||+++|.||++|+|+||++|++|||++.+|+.. +++..|+|++|++|++ +|.++|||+|+|+|+|+++|+||+
T Consensus 533 ~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~-~~~~~i~a~vP~~e~~-gy~~~Lrs~T~G~a~~~~~f~~y~ 610 (638)
T 3j25_A 533 ELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLK-NNEVILSGEIPARCIQ-EYRSDLTFFTNGRSVCLTELKGYH 610 (638)
T ss_dssp BCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCC-TTEEEEECCCSSCCHH-HHHHHHHHTTTTCCEEECCCCCCC
T ss_pred EEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEec-CCeEEEEEEECHHHhh-CHHHHHHhhCCCcEEEEEEECceE
Confidence 79999999999999999999999999999999999864 5789999999999997 899999999999999999999999
Q ss_pred eccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHh
Q 008991 429 QADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKL 467 (547)
Q Consensus 429 ~~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~l 467 (547)
+ +.|+|++--..-. .-..+.|.+..||
T Consensus 611 ~---------vpgdp~~~~~~~~---~~~d~~~~~~~k~ 637 (638)
T 3j25_A 611 V---------TTGEPVCQPRRPN---SRIDKVRYMFNKI 637 (638)
T ss_dssp C---------CCSCCSCCCCCCC---CCHHHHHHHHHHH
T ss_pred E---------CCCCccccccCCC---ChhhHHHHHHhcc
Confidence 8 5555543211111 1234566666665
No 6
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.6e-73 Score=639.67 Aligned_cols=402 Identities=25% Similarity=0.392 Sum_probs=357.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
.++.++|||||||.+|..++.++++.||++|+|+|++++++.++..+|..+...++|+++|+||+|+..++..++.+++.
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~ 152 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLH 152 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHH
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999888888888877
Q ss_pred HhcCCC------------------------------C-------------------------------------------
Q 008991 99 SMFDLD------------------------------P------------------------------------------- 105 (547)
Q Consensus 99 ~~l~~~------------------------------~------------------------------------------- 105 (547)
+.++.. .
T Consensus 153 ~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~ 232 (693)
T 2xex_A 153 DRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGD 232 (693)
T ss_dssp HHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC
Confidence 765421 0
Q ss_pred ---------------------ccceeccccccccccccHHHHHhhCCCCCc--------------------cccCceeEE
Q 008991 106 ---------------------SEALLTSAKTGQGLEHVLPAVIERIPPPRG--------------------IINSSLRML 144 (547)
Q Consensus 106 ---------------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~--------------------~~~~p~~~~ 144 (547)
.|++++||++|.|++.|+++|++++|+|.. +.++||.++
T Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~ 312 (693)
T 2xex_A 233 EEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAAL 312 (693)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEE
Confidence 258899999999999999999999999965 257899999
Q ss_pred EEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCc
Q 008991 145 LLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDT 223 (547)
Q Consensus 145 v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdt 223 (547)
||++++|+++|+++++||+||+|++||+|++..+++.++|.+++.+++ ++.+++++.||||+++. |+ +++++|||
T Consensus 313 VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-gl---~~~~~GdT 388 (693)
T 2xex_A 313 AFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV-GL---KDTGTGDT 388 (693)
T ss_dssp EEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE-SC---SSCCTTCE
T ss_pred EEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe-Cc---ccCccCCE
Confidence 999999999999999999999999999999999999999999999987 58899999999999987 66 66789999
Q ss_pred ccCCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHH
Q 008991 224 LYHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQR 303 (547)
Q Consensus 224 l~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~er 303 (547)
|++.+.+ .++++++.+.|+++++++|.++.|+++|.+||++|++|||+|+++.++. +|+.+..| +|+|||||+++|
T Consensus 389 l~~~~~~-~~~~~~~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~e--t~e~il~g-~Gelhlei~~~r 464 (693)
T 2xex_A 389 LCGEKND-IILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEE--TGQVIIGG-MGELHLDILVDR 464 (693)
T ss_dssp EEETTCC-EECCCCSSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC-----CCCEEEEE-SSHHHHHHHHHH
T ss_pred EecCCCc-cccCCcCCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCC--CCcEEEEe-CCHHHHHHHHHH
Confidence 9987644 6788999999999999999999999999999999999999999998643 47888888 799999999999
Q ss_pred HHHHhCCeeEEecCceeeEEEeeCCCE-------------E------E-----------EeC------------------
Q 008991 304 LEQEYGAHVISTVPTVPYIFEYSDGSK-------------A------E-----------VQN------------------ 335 (547)
Q Consensus 304 L~~e~g~~v~~t~P~V~Yre~~~~g~~-------------~------~-----------~~~------------------ 335 (547)
|++|||+++.+++|+|+||||+++... . . +.+
T Consensus 465 L~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g 544 (693)
T 2xex_A 465 MKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAG 544 (693)
T ss_dssp HHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHH
T ss_pred HHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHHH
Confidence 999999999999999999999974211 0 0 111
Q ss_pred ---------CCCCCC-Ccc-----------------c--------------ccceeecceEEEEEEcCCCcHHHHHHHHh
Q 008991 336 ---------PASLPS-NPK-----------------K--------------RVTACWEPTVVATIIIPSEYVGSVITLCS 374 (547)
Q Consensus 336 ---------p~~fp~-~~~-----------------~--------------~i~~llEP~~~~~I~vP~e~~G~v~~~l~ 374 (547)
.++||+ |.. | .-+.||||||+++|.||++|+|+||++|+
T Consensus 545 ~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~ 624 (693)
T 2xex_A 545 LKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVT 624 (693)
T ss_dssp HHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHH
Confidence 257776 110 1 11489999999999999999999999999
Q ss_pred hcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 375 ERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 375 ~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
+|||+++++++.+ +++.|+|++|++||+ +|.++|||+|+|+|+|+|+|+||++.
T Consensus 625 ~rrG~i~~~~~~~-~~~~i~a~vP~~e~~-gy~~~Lrs~T~G~~~~~~~f~~y~~~ 678 (693)
T 2xex_A 625 SRRGRVDGMEPRG-NAQVVNAYVPLSEMF-GYATSLRSNTQGRGTYTMYFDHYAEV 678 (693)
T ss_dssp HTTCEEEEEEEET-TEEEEEEEEEGGGCT-THHHHHHHHTTTCCEEEEEEEEEEEC
T ss_pred hCCcEeecccccC-CeEEEEEEeCHHHHH-hHHHHhHHhcCCceEEEEEeCcceEC
Confidence 9999999999876 689999999999997 99999999999999999999999983
No 7
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=4.6e-73 Score=639.47 Aligned_cols=403 Identities=28% Similarity=0.410 Sum_probs=316.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
+++.++|||||||.+|..++.++++.+|++|+|+|++++.+.+|...|..+...++|+++|+||+|+..++...+.+++.
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~ 154 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQ 154 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHH
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HhcCCC------------------------------C-------------------------------------------
Q 008991 99 SMFDLD------------------------------P------------------------------------------- 105 (547)
Q Consensus 99 ~~l~~~------------------------------~------------------------------------------- 105 (547)
+.++.. .
T Consensus 155 ~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~ 234 (691)
T 1dar_A 155 ERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG 234 (691)
T ss_dssp HTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC
Confidence 766531 0
Q ss_pred ---------------------ccceeccccccccccccHHHHHhhCCCCCc------------------cccCceeEEEE
Q 008991 106 ---------------------SEALLTSAKTGQGLEHVLPAVIERIPPPRG------------------IINSSLRMLLL 146 (547)
Q Consensus 106 ---------------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~------------------~~~~p~~~~v~ 146 (547)
.|++++||++|.|+++||++|++++|+|.. +.++||.++||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vf 314 (691)
T 1dar_A 235 EEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAF 314 (691)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEE
Confidence 258999999999999999999999999975 25789999999
Q ss_pred eeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCccc
Q 008991 147 DSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLY 225 (547)
Q Consensus 147 ~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~ 225 (547)
++++|+++|+++++||++|+|++||+|++.++++.+++.+++.+++ ++.+++++.||||+++. |+ +++++||||+
T Consensus 315 k~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-gl---~~~~~Gdtl~ 390 (691)
T 1dar_A 315 KIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV-GL---KETITGDTLV 390 (691)
T ss_dssp EEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE-CC---SSCCTTCEEE
T ss_pred EEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe-Cc---ccCccCCEEe
Confidence 9999999999999999999999999999999999999999999987 57899999999999987 66 5678999999
Q ss_pred CCCCCCCCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHH
Q 008991 226 HNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLE 305 (547)
Q Consensus 226 ~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~ 305 (547)
+.+.+..++++++.+.|+++++++|.++.|+++|.++|++|++|||+|+++.++. +|+.+..| +|+|||||+++||+
T Consensus 391 ~~~~~~~~l~~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~e--t~e~i~~g-~Gelhlei~~~rL~ 467 (691)
T 1dar_A 391 GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPE--TGQTIISG-MGELHLEIIVDRLK 467 (691)
T ss_dssp ETTCCCCBCC--------------------------------CCCCSCEEEC-------CEEEEE-SCCC---------C
T ss_pred cCCCcccccCCCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCC--CCcEEEEe-CCHHHHHHHHHHHH
Confidence 8764326788888999999999999999999999999999999999999998643 47877778 79999999999999
Q ss_pred HHhCCeeEEecCceeeEEEeeCCCE------------------------------EEEeC--------------------
Q 008991 306 QEYGAHVISTVPTVPYIFEYSDGSK------------------------------AEVQN-------------------- 335 (547)
Q Consensus 306 ~e~g~~v~~t~P~V~Yre~~~~g~~------------------------------~~~~~-------------------- 335 (547)
+|||+++.+++|+|+||||+++... ..|.+
T Consensus 468 ~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~ 547 (691)
T 1dar_A 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIE 547 (691)
T ss_dssp CCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHH
T ss_pred HhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHH
Confidence 9999999999999999999874211 01111
Q ss_pred -------CCCCCC-Ccc-----------------c--------------ccceeecceEEEEEEcCCCcHHHHHHHHhhc
Q 008991 336 -------PASLPS-NPK-----------------K--------------RVTACWEPTVVATIIIPSEYVGSVITLCSER 376 (547)
Q Consensus 336 -------p~~fp~-~~~-----------------~--------------~i~~llEP~~~~~I~vP~e~~G~v~~~l~~r 376 (547)
.++||+ |.. | .-+.|||||++++|.||++|+|+||++|++|
T Consensus 548 ~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~r 627 (691)
T 1dar_A 548 EAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNAR 627 (691)
T ss_dssp HHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHT
T ss_pred HHHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHC
Confidence 257776 110 1 1148999999999999999999999999999
Q ss_pred CeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 377 RGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 377 RG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
||+++++++.+ +++.|+|++|++|++ +|.++|||+|+|+|+|+|+|+||++.
T Consensus 628 rG~i~~~~~~~-~~~~i~a~vP~~e~~-gy~~~Lrs~T~G~~~~~~~f~~y~~~ 679 (691)
T 1dar_A 628 RGQILGMEPRG-NAQVIRAFVPLAEMF-GYATDLRSKTQGRGSFVMFFDHYQEV 679 (691)
T ss_dssp TCCEEEEEEET-TEEEEEEEEETTTSS-SHHHHHHHHTTTCCEEEEEEEEEEEC
T ss_pred CceeecceecC-CeEEEEEEecHHHHh-hHHHHHHHhcCCceEEEEEeCcceEC
Confidence 99999999876 689999999999997 99999999999999999999999984
No 8
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=5.8e-70 Score=612.22 Aligned_cols=401 Identities=24% Similarity=0.317 Sum_probs=355.6
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
...++.+||||||||.+|..++.++++.+|++++|+|+++|.+.||..+|..+...++|+++|+||+|+. .+.++..++
T Consensus 70 ~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~ 148 (665)
T 2dy1_A 70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLED 148 (665)
T ss_dssp EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHH
T ss_pred eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999 888888888
Q ss_pred HHHhcCC-------------------------------------------------------------------------
Q 008991 97 LKSMFDL------------------------------------------------------------------------- 103 (547)
Q Consensus 97 i~~~l~~------------------------------------------------------------------------- 103 (547)
+.+.++.
T Consensus 149 l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~ 228 (665)
T 2dy1_A 149 LRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEE 228 (665)
T ss_dssp HHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCC
Confidence 8776650
Q ss_pred -----------------CCccceeccccccccccccHHHHHhhCCCCCcc-ccCceeEEEEeeeccccccEEEEEEEecC
Q 008991 104 -----------------DPSEALLTSAKTGQGLEHVLPAVIERIPPPRGI-INSSLRMLLLDSYYDEYKGVICHVAVVDG 165 (547)
Q Consensus 104 -----------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~-~~~p~~~~v~~~~~d~~~G~v~~~rV~~G 165 (547)
...|++++||++|.|+++||++|++++|+|... .++|+.++||++++|+++|+++++||++|
T Consensus 229 l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG 308 (665)
T 2dy1_A 229 VTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRG 308 (665)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred CCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEccc
Confidence 013689999999999999999999999999754 68999999999999999999999999999
Q ss_pred ccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCC-CCCCCCCCCCcce
Q 008991 166 TLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSI-VEPLPGFKPAKHM 243 (547)
Q Consensus 166 ~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~-~~~l~~~~~~~p~ 243 (547)
+|++||+|++.+ +..+|.++..+++ ++.+++++.|||++++. |+ +++++||||++.+.+ ..++++++.+.|+
T Consensus 309 ~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~-gl---~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~ 382 (665)
T 2dy1_A 309 RLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP-KA---EGLHRGMVLWQGEKPESEEVPFARLPDPN 382 (665)
T ss_dssp EECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEES-SC---TTCCTTCEEESSSCCCGGGSCCCCCCCCC
T ss_pred EEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEe-CC---ccCccCCEEecCCCccccccCCCCCCCce
Confidence 999999999876 7789999988887 57899999999999885 65 578899999987632 2578888999999
Q ss_pred EEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEE
Q 008991 244 VFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIF 323 (547)
Q Consensus 244 v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre 323 (547)
++++++|.+++|+++|.++|+||++|||+|+++.++. +|+.+..| +|+|||||+++||+ |||+++.+++|+|+|||
T Consensus 383 ~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~e--t~e~i~~g-~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrE 458 (665)
T 2dy1_A 383 VPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEE--TGELLLWG-HGELHLATAKERLQ-DYGVEVEFSVPKVPYRE 458 (665)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTT--TCCEEEEE-SSHHHHHHHHHHHH-HTTCCEEEECCCCCCEE
T ss_pred EEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCC--CCCEEEEe-cCHHHHHHHHHHHH-HCCceEEEeCCEEEEEE
Confidence 9999999999999999999999999999999999754 47877778 79999999999999 99999999999999999
Q ss_pred EeeCCCE-------------------EEEeC-----------------------------------CCCCCC-Ccc----
Q 008991 324 EYSDGSK-------------------AEVQN-----------------------------------PASLPS-NPK---- 344 (547)
Q Consensus 324 ~~~~g~~-------------------~~~~~-----------------------------------p~~fp~-~~~---- 344 (547)
|+++... ..+++ +++||+ |..
T Consensus 459 ti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~ 538 (665)
T 2dy1_A 459 TIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVY 538 (665)
T ss_dssp EESSCEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEE
T ss_pred eeccceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEE
Confidence 9975211 01221 478886 110
Q ss_pred -------------cc--------------cceeecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEe
Q 008991 345 -------------KR--------------VTACWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCL 397 (547)
Q Consensus 345 -------------~~--------------i~~llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~i 397 (547)
|+ -+.|||||++++|.||++|+|+||++|++|||+++++++.+ +++.|+|++
T Consensus 539 dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~a~~ 617 (665)
T 2dy1_A 539 NGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-ALSVVHAEV 617 (665)
T ss_dssp EEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEEEEEEE
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC-CeEEEEEEE
Confidence 11 13799999999999999999999999999999999999876 799999999
Q ss_pred chHhHHHHHHHHhcccCcCeEEEEeEeccceec
Q 008991 398 PLREIVVDFYNELKSLTSGYASFDYEDSEYQQA 430 (547)
Q Consensus 398 Pl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~ 430 (547)
|++|++ +|+++|||+|+|+|+|+|+|+||++.
T Consensus 618 P~~e~~-~~~~~Lrs~T~G~~~~~~~f~~y~~~ 649 (665)
T 2dy1_A 618 PLAEVL-EYYKALPGLTGGAGAYTLEFSHYAEV 649 (665)
T ss_dssp EGGGCT-THHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred CHHHHh-hHHHHhHhhcCCcEEEEEEeCceeEC
Confidence 999997 99999999999999999999999983
No 9
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=8.5e-66 Score=591.27 Aligned_cols=422 Identities=24% Similarity=0.319 Sum_probs=344.9
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC----CCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT----ADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~----~~~-- 90 (547)
++.++.++|||||||.||..++.++++.||++|+|+|+++|++.||..+|..+...++|+++|+||+|+.. .++
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999863 233
Q ss_pred -----HHHHHHHHHhc--------C---CCC--ccceecccccccc----------------------------------
Q 008991 91 -----DRVKAQLKSMF--------D---LDP--SEALLTSAKTGQG---------------------------------- 118 (547)
Q Consensus 91 -----~~~~~~i~~~l--------~---~~~--~~vi~~SAk~g~G---------------------------------- 118 (547)
.+..+++...+ + +.+ .++..+||++|.|
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 33344444443 1 221 2456667754421
Q ss_pred -----------------------------------------------------------------------------ccc
Q 008991 119 -----------------------------------------------------------------------------LEH 121 (547)
Q Consensus 119 -----------------------------------------------------------------------------v~~ 121 (547)
++.
T Consensus 254 ~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~ 333 (842)
T 1n0u_A 254 TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADA 333 (842)
T ss_dssp TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHH
T ss_pred CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHH
Confidence 155
Q ss_pred cHHHHHhhCCCCCc-------------------------cccCceeEEEEeeeccccccE-EEEEEEecCccccCCEEEE
Q 008991 122 VLPAVIERIPPPRG-------------------------IINSSLRMLLLDSYYDEYKGV-ICHVAVVDGTLRKGDKISS 175 (547)
Q Consensus 122 Ll~~l~~~ip~p~~-------------------------~~~~p~~~~v~~~~~d~~~G~-v~~~rV~~G~lk~gd~v~~ 175 (547)
||+++++++|+|.. +.++||.++||++++|++.|+ ++++||+||+|++||+|.+
T Consensus 334 LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v 413 (842)
T 1n0u_A 334 LLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRI 413 (842)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEE
T ss_pred HHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEe
Confidence 78888899999852 457899999999999999995 9999999999999999976
Q ss_pred ecC------CC---eeEEEEEEeecC-CcccccccccCcEEEEEeccccccccccc-CcccCCCCCCCCCCCCCCC-cce
Q 008991 176 AAT------GQ---AYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIG-DTLYHNKSIVEPLPGFKPA-KHM 243 (547)
Q Consensus 176 ~~~------~~---~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~G-dtl~~~~~~~~~l~~~~~~-~p~ 243 (547)
... ++ ..+|.+++.+++ ++.+++++.||||+++. |+ +++.+| +||++.+.+ .+++++.++ +|+
T Consensus 414 ~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~-gl---~~~~~~t~Tl~~~~~~-~~l~~~~~~~~Pv 488 (842)
T 1n0u_A 414 QGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV-GI---DQFLLKTGTLTTSETA-HNMKVMKFSVSPV 488 (842)
T ss_dssp ECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE-SC---TTTCCSSEEEESCTTC-CCBCCCCCCCSCC
T ss_pred ccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE-cc---ccceecceeecCCCCc-cccccCCCCCCce
Confidence 533 34 588999999977 57899999999999886 66 556554 699986643 677777766 699
Q ss_pred EEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHh-CCeeEEecCceeeE
Q 008991 244 VFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEY-GAHVISTVPTVPYI 322 (547)
Q Consensus 244 v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~-g~~v~~t~P~V~Yr 322 (547)
++++++|.++.|.++|.+||++|++|||+|+++.++ +|+.+..| +|+|||||+++||++|| |+++.+++|+|+||
T Consensus 489 ~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~e---tge~il~g-~GelHLei~~~rL~~~f~~vev~~~~P~V~yr 564 (842)
T 1n0u_A 489 VQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSE---SGEHIVAG-TGELHLEICLQDLEHDHAGVPLKISPPVVAYR 564 (842)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECT---TSCEEEEE-SSHHHHHHHHHHHHHTTSCSCEEEECCCCCCE
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcC---CCCEEEEe-ccHHHHHHHHHHHHHHhcCCceEecCcEEEEE
Confidence 999999999999999999999999999999999983 48888888 79999999999999999 99999999999999
Q ss_pred EEeeCCCEE---------------EEe-----------------------------------------------------
Q 008991 323 FEYSDGSKA---------------EVQ----------------------------------------------------- 334 (547)
Q Consensus 323 e~~~~g~~~---------------~~~----------------------------------------------------- 334 (547)
||+++.... .++
T Consensus 565 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~ 644 (842)
T 1n0u_A 565 ETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPN 644 (842)
T ss_dssp EEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSE
T ss_pred EeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCc
Confidence 999753210 010
Q ss_pred -----------------------------C-CCCCCC-C-------------cc------cc--------------ccee
Q 008991 335 -----------------------------N-PASLPS-N-------------PK------KR--------------VTAC 350 (547)
Q Consensus 335 -----------------------------~-p~~fp~-~-------------~~------~~--------------i~~l 350 (547)
. .++||+ + +. |+ -++|
T Consensus 645 ~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~L 724 (842)
T 1n0u_A 645 LVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 724 (842)
T ss_dssp EEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeE
Confidence 0 246665 1 10 11 1479
Q ss_pred ecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCC-cEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEecccee
Q 008991 351 WEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDS-QRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQ 429 (547)
Q Consensus 351 lEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~-~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~ 429 (547)
|||||+++|.||++|+|+||++|++|||++++++..++ ++..|++++|++||+ +|.++|||+|+|.|+|+++|+||++
T Consensus 725 LEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~f-gy~~~LRs~T~G~g~~~~~F~~y~~ 803 (842)
T 1n0u_A 725 QEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESF-GFTGELRQATGGQAFPQMVFDHWST 803 (842)
T ss_dssp EEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCT-THHHHHHHHTTTCCEEEEEEEEEEE
T ss_pred EeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhh-hhHHHHHhhCCCCceEEEEecccee
Confidence 99999999999999999999999999999999987543 578999999999998 8999999999999999999999998
Q ss_pred ccceeeeEeecCcccCcceeeeehHHHHHHHHHHHHHh
Q 008991 430 ADMVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKL 467 (547)
Q Consensus 430 ~~l~k~~i~~ng~~vd~ls~i~~~~~a~~~~~~~~~~l 467 (547)
+.+++.|. .+.+++++.+.
T Consensus 804 ---------vp~~~~~~----------~~~a~~~~~~~ 822 (842)
T 1n0u_A 804 ---------LGSDPLDP----------TSKAGEIVLAA 822 (842)
T ss_dssp ---------CCSCTTCT----------TSHHHHHHHHH
T ss_pred ---------CCCCccch----------hhHHHHHHHHH
Confidence 66777653 25666666643
No 10
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.6e-59 Score=513.97 Aligned_cols=338 Identities=21% Similarity=0.299 Sum_probs=287.8
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
..+++.+||||||||+||..++.++|++||+||+||||.+|+++||+.+|++|.+.++|+|+|+||||++++++.++.++
T Consensus 96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~ 175 (548)
T 3vqt_A 96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMAD 175 (548)
T ss_dssp EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHH
T ss_pred EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC-----------------------------------------------------------------------
Q 008991 97 LKSMFDLDP----------------------------------------------------------------------- 105 (547)
Q Consensus 97 i~~~l~~~~----------------------------------------------------------------------- 105 (547)
+++.|+..+
T Consensus 176 i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (548)
T 3vqt_A 176 IEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAG 255 (548)
T ss_dssp HHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHC
T ss_pred hhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhcc
Confidence 988875310
Q ss_pred -------------ccceeccccccccccccHHHHHhhCCCCCcc---------ccCceeEEEEeeecc---ccccEEEEE
Q 008991 106 -------------SEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------INSSLRMLLLDSYYD---EYKGVICHV 160 (547)
Q Consensus 106 -------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~---------~~~p~~~~v~~~~~d---~~~G~v~~~ 160 (547)
.|++++||++|.||+.||+++++++|+|... .+.||.++||++.+| ++.|+++++
T Consensus 256 ~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~ 335 (548)
T 3vqt_A 256 TPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFL 335 (548)
T ss_dssp CCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEE
T ss_pred CchhHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEE
Confidence 2478999999999999999999999999742 367999999999877 899999999
Q ss_pred EEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCCCC
Q 008991 161 AVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKP 239 (547)
Q Consensus 161 rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~~~ 239 (547)
||+||+|++||+|++..+++.+++.+++.+++ ++.+++++.||||+++. |+ .++++||||++.+.+ .++++++.
T Consensus 336 RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~-gl---~~~~~GDTl~~~~~~-~~~~~i~~ 410 (548)
T 3vqt_A 336 RICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP-NH---GTIKIGDTFTESKEV-LKFVGIPN 410 (548)
T ss_dssp EEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEE-CS---SCCCTTCEEESSSSC-CCBCCCEE
T ss_pred EEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEec-CC---ccCccCCEecCCCCc-cccCCCCC
Confidence 99999999999999999999999999999888 57899999999999886 55 788999999987754 67888888
Q ss_pred CcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeE-----E
Q 008991 240 AKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVI-----S 314 (547)
Q Consensus 240 ~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~-----~ 314 (547)
+.|+++++++|.++.|+++|.++|++|++|||+..++.++ +|+ ++++++|+|||||+++||+||||++++ +
T Consensus 411 ~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~e---t~e-~il~g~GeLHLeI~~erL~~ey~vev~~e~v~~ 486 (548)
T 3vqt_A 411 FAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLV---NND-YILGAVGVLQFDVIVARLADEYGVDAVYEGVST 486 (548)
T ss_dssp ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESS---SCC-CEEEESSTHHHHHHHHHHHHHHCCCEEEEECSC
T ss_pred CCCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECC---CCc-EEEEEECHHHHHHHHHHHHHHhCCCEEEeeccc
Confidence 9999999999999999999999999999999966554443 355 566779999999999999999999977 4
Q ss_pred ecCceeeEEEeeCCC--------EEEEeCCCC----CCCCcccccceeecceEEEEEEcCCCc
Q 008991 315 TVPTVPYIFEYSDGS--------KAEVQNPAS----LPSNPKKRVTACWEPTVVATIIIPSEY 365 (547)
Q Consensus 315 t~P~V~Yre~~~~g~--------~~~~~~p~~----fp~~~~~~i~~llEP~~~~~I~vP~e~ 365 (547)
+.|+|+||||++... ...-+...+ ||. +..+..+.|||.++++..|+|.
T Consensus 487 ~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~~~--~~~l~~~~e~~~~~~f~~~~Ei 547 (548)
T 3vqt_A 487 HTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPN--PWRLESAMERYPKVEFRTTREI 547 (548)
T ss_dssp CEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEESS--HHHHHHHHHHCTTSEEESEEEC
T ss_pred cCceEEecCCccchhhhhhhhhheeeecCCCCEEEEecC--HHHhHHhhccCCCeEEeeeccC
Confidence 679999999986311 011111111 243 2455667899999999999875
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=4.7e-51 Score=446.36 Aligned_cols=301 Identities=23% Similarity=0.317 Sum_probs=265.5
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
...++.++|||||||.+|..++.++++.+|++|+|+|++++++.++..+|..+...++|+++|+||+|+.+++..+..++
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~e 157 (528)
T 3tr5_A 78 PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDE 157 (528)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHH
T ss_pred EeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHhcCCCC-----------------------------------------------------------------------
Q 008991 97 LKSMFDLDP----------------------------------------------------------------------- 105 (547)
Q Consensus 97 i~~~l~~~~----------------------------------------------------------------------- 105 (547)
+++.++...
T Consensus 158 i~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~ 237 (528)
T 3tr5_A 158 IESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGAS 237 (528)
T ss_dssp HHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHS
T ss_pred HHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 877765410
Q ss_pred -------------ccceeccccccccccccHHHHHhhCCCCCcc---------ccCceeEEEEeee--ccc-cccEEEEE
Q 008991 106 -------------SEALLTSAKTGQGLEHVLPAVIERIPPPRGI---------INSSLRMLLLDSY--YDE-YKGVICHV 160 (547)
Q Consensus 106 -------------~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~---------~~~p~~~~v~~~~--~d~-~~G~v~~~ 160 (547)
.|++++||++|.||++||+++++++|+|... .+.||.++||++. +|| ++|+++++
T Consensus 238 ~~~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~ 317 (528)
T 3tr5_A 238 HPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFL 317 (528)
T ss_dssp CCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEE
T ss_pred hHHHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEE
Confidence 1678999999999999999999999998753 2589999999987 499 99999999
Q ss_pred EEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCCCC
Q 008991 161 AVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFKP 239 (547)
Q Consensus 161 rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~~~ 239 (547)
||+||+|++||.|++.++++.+++.++..+++ ++.+++++.||||+.+. + +.++++|||||+..+ ..++++..
T Consensus 318 RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~-~---l~~~~~GDtl~~~~~--~~~~~~~~ 391 (528)
T 3tr5_A 318 RIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLH-N---HGTIQIGDTFTQGER--FKFTGIPN 391 (528)
T ss_dssp EEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEE-E---SSSCCTTCEEESSCC--CCBCCCEE
T ss_pred EEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEc-C---CCCCccCCEEcCCCC--cccCCCCC
Confidence 99999999999999999999999999887765 67899999999998765 4 478899999998542 34566666
Q ss_pred CcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCce
Q 008991 240 AKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTV 319 (547)
Q Consensus 240 ~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V 319 (547)
+.|+++++++|.++.|+++|.+||++|++|||+ .+..+.. + ..+++|++|+|||||+++||++|||+++.+++|+|
T Consensus 392 ~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~--~-~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v 467 (528)
T 3tr5_A 392 FASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLD--S-NELILGAVGLLQFDVVAYRLENEYNVKCVYESVNV 467 (528)
T ss_dssp ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETT--C-CCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCSC
T ss_pred CCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCC--C-CCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCce
Confidence 789999999999999999999999999999986 5555433 3 45788889999999999999999999999999999
Q ss_pred eeEEEeeC
Q 008991 320 PYIFEYSD 327 (547)
Q Consensus 320 ~Yre~~~~ 327 (547)
+|++++..
T Consensus 468 ~~~~~i~~ 475 (528)
T 3tr5_A 468 VTARWVIC 475 (528)
T ss_dssp CEEEEEEC
T ss_pred EEEEEecC
Confidence 99998764
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.8e-50 Score=440.60 Aligned_cols=300 Identities=23% Similarity=0.323 Sum_probs=259.2
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
+.+++.++|||||||.+|..++.++++.+|++|+|+|++++++.|+..+|..+...++|+++|+||+|+..++..++.++
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~ 157 (529)
T 2h5e_A 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDE 157 (529)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHH
T ss_pred EECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999889999999999999998887667777
Q ss_pred HHHhcCCC------------------------------------------------------------------------
Q 008991 97 LKSMFDLD------------------------------------------------------------------------ 104 (547)
Q Consensus 97 i~~~l~~~------------------------------------------------------------------------ 104 (547)
+++.++..
T Consensus 158 i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~ 237 (529)
T 2h5e_A 158 VENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGA 237 (529)
T ss_dssp HHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhh
Confidence 66553210
Q ss_pred -------------CccceeccccccccccccHHHHHhhCCCCCccc---------cCceeEEEEeeec---cccccEEEE
Q 008991 105 -------------PSEALLTSAKTGQGLEHVLPAVIERIPPPRGII---------NSSLRMLLLDSYY---DEYKGVICH 159 (547)
Q Consensus 105 -------------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~---------~~p~~~~v~~~~~---d~~~G~v~~ 159 (547)
..|++++||++|.||++||++|.+++|+|.... ++||.++||++.. ++++|++++
T Consensus 238 ~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~ 317 (529)
T 2h5e_A 238 SNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAF 317 (529)
T ss_dssp SCCCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEE
T ss_pred hhhhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEE
Confidence 125889999999999999999999999997532 4799999999986 468999999
Q ss_pred EEEecCccccCCEEEEecCCCeeEEEEEEeecC-CcccccccccCcEEEEEecccccccccccCcccCCCCCCCCCCCCC
Q 008991 160 VAVVDGTLRKGDKISSAATGQAYEIVDVGIMHP-ELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIVEPLPGFK 238 (547)
Q Consensus 160 ~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~~~l~~~~ 238 (547)
+||+||+|++||+|.+.++++..+|.++..+.+ ++.+++++.||||+.+. | +.++++||||++.+ . ..++++.
T Consensus 318 ~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-~---l~~~~~Gdtl~~~~-~-~~~~~~~ 391 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLH-N---HGTIQIGDTFTQGE-M-MKFTGIP 391 (529)
T ss_dssp EEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEEC-C---SSCCCTTCEEESSC-C-CCBCCCE
T ss_pred EEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEe-c---cCCCccCCEeecCC-c-cccCCCC
Confidence 999999999999999999999999999988766 67899999999998764 4 47889999999876 2 4667777
Q ss_pred CCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecCcccccceEEEeecccchHHHHHHHHHHHhCCeeEEecCc
Q 008991 239 PAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPT 318 (547)
Q Consensus 239 ~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~ 318 (547)
.+.|+++++++|.++.|+++|.+||++|++||| +.+..+++ +| .+++|++|+|||||+++||++|||+++.+++|+
T Consensus 392 ~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~--t~-~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~ 467 (529)
T 2h5e_A 392 NFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPIS--NN-DLIVGAVGVLQFDVVVARLKSEYNVEAVYESVN 467 (529)
T ss_dssp EECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETT--SC-CEEEEESSTHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred CCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCC--CC-cEEEEEECHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 888999999999999999999999999999997 77777644 35 477777999999999999999999999999999
Q ss_pred eeeEEEee
Q 008991 319 VPYIFEYS 326 (547)
Q Consensus 319 V~Yre~~~ 326 (547)
|+||||+.
T Consensus 468 v~y~eti~ 475 (529)
T 2h5e_A 468 VATARWVE 475 (529)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEc
Confidence 99999985
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.2e-47 Score=387.49 Aligned_cols=238 Identities=21% Similarity=0.287 Sum_probs=197.2
Q ss_pred cccccccCcccCCCCCCCCCCCCCCCcceEEeeeccCCC----Cc-----hhHHHHHHHhhhcCCceeEEEecCcccccc
Q 008991 215 TKEARIGDTLYHNKSIVEPLPGFKPAKHMVFSGLYPADG----SD-----FEVLNHAIERLTCNDASVSVTKETSTALGL 285 (547)
Q Consensus 215 ~~~~~~Gdtl~~~~~~~~~l~~~~~~~p~v~~~i~p~~~----~d-----~~~L~~aL~kL~~~Dpsl~v~~e~s~~lg~ 285 (547)
++++++|||||+.+.+ .++|+++.++|+++++++|.+. +| .++|++||.||++|||||++++++++ .
T Consensus 6 l~~~~iGDTl~~~~~p-~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t---~ 81 (332)
T 3e3x_A 6 LGELKISDTICAQNAV-EALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDP---D 81 (332)
T ss_dssp ------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSST---T
T ss_pred CCCCccCCEEcCCCCc-ccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCC---C
Confidence 3788999999998755 7899999999999999999876 65 67999999999999999999999764 5
Q ss_pred eEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEEEeeCCCEEEEeCCCCCCCCcccccceeecceEEEEEEcCCCc
Q 008991 286 GFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKAEVQNPASLPSNPKKRVTACWEPTVVATIIIPSEY 365 (547)
Q Consensus 286 ~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre~~~~g~~~~~~~p~~fp~~~~~~i~~llEP~~~~~I~vP~e~ 365 (547)
+|+|+++|+|||+|++|||+|| |+++.+++|+|+|||+ +| .++|||+.++|.||++|
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~G--------------------~llEPi~~v~I~vPee~ 138 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--DG--------------------QLMEPFETVTIDVMEEH 138 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--TT--------------------EEEEEEEEEEEEEEGGG
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--CC--------------------EEECcEEEEEEEECHHH
Confidence 6999999999999999999999 9999999999999997 44 38999999999999999
Q ss_pred HHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEEeEeccceeccceeeeEeecCcccC
Q 008991 366 VGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFDYEDSEYQQADMVKLDILLNGQPVD 445 (547)
Q Consensus 366 ~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~~~~~~y~~~~l~k~~i~~ng~~vd 445 (547)
+|+||++|++|||++.+|++.+++++.|+|.+|++|++ +|+++|+|+|+|+|+|+|+|+||++..--.+.-..||..|
T Consensus 139 ~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~-Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r~~g~lv- 216 (332)
T 3e3x_A 139 QGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLI-GFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQRVNGVLI- 216 (332)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHT-THHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCCCCCEEE-
T ss_pred HHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhh-hHHHHhhhhCCCcEEEEEEecCceEcCCCccccccCceEE-
Confidence 99999999999999999999876899999999999997 9999999999999999999999998731334445888886
Q ss_pred cceeeeehHHHHHHHHHHHHHhhccCCCCceeeeeeeee-CCEEEEE
Q 008991 446 AMATIVHNLKAQRVGRELVEKLKKFIDRQMFEITIQAAI-GSKVIAR 491 (547)
Q Consensus 446 ~ls~i~~~~~a~~~~~~~~~~lk~~i~r~~~~v~~q~~~-~~~~~~~ 491 (547)
|.+.|.+.++.|.++.+|+.|+|..+..+ .|.||.-
T Consensus 217 ----------~~~~g~~~~y~l~~~~~rg~~fv~pg~~vy~gmivg~ 253 (332)
T 3e3x_A 217 ----------ANAAGKALTNALFNLQERGRLFIGHGVEVYEGMVIGI 253 (332)
T ss_dssp ----------ESSCEECCHHHHHHHTTSEEESCCTTCEECTTEEEEE
T ss_pred ----------EcCCCcEeHhhhhhHHhhceEEecCCCeEECCeEEEe
Confidence 77889999999999999999999999999 8999883
No 14
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=3.7e-29 Score=265.00 Aligned_cols=216 Identities=19% Similarity=0.279 Sum_probs=180.7
Q ss_pred CCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeec
Q 008991 9 GPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINK 82 (547)
Q Consensus 9 ~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNK 82 (547)
..|+|.+ ++..++.++|||||||.+|..++.++++.+|++|+|+|+++|.+.||.++|..+...++| +++|+||
T Consensus 49 ~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK 128 (397)
T 1d2e_A 49 ARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNK 128 (397)
T ss_dssp ETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred hcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 3566664 345668999999999999999999999999999999999999999999999999999999 6899999
Q ss_pred CCCCCCC--HHHHHHHHHHh---cCCC--Cccceecccccccc----------ccccHHHHHhhCCCCCccccCceeEEE
Q 008991 83 IDQPTAD--PDRVKAQLKSM---FDLD--PSEALLTSAKTGQG----------LEHVLPAVIERIPPPRGIINSSLRMLL 145 (547)
Q Consensus 83 iDl~~~~--~~~~~~~i~~~---l~~~--~~~vi~~SAk~g~G----------v~~Ll~~l~~~ip~p~~~~~~p~~~~v 145 (547)
+|+.+.. .+...+++.+. +++. ..+++++||++|.| +.+|+++|.+.+|+|..+.++|+++.|
T Consensus 129 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v 208 (397)
T 1d2e_A 129 ADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 208 (397)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEEC
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence 9997521 12223333333 3543 35899999999874 899999999999999888899999999
Q ss_pred EeeeccccccEEEEEEEecCccccCCEEEEecCC--CeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccC
Q 008991 146 LDSYYDEYKGVICHVAVVDGTLRKGDKISSAATG--QAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGD 222 (547)
Q Consensus 146 ~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~--~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gd 222 (547)
++++.++++|++++++|.+|+|++||.|.+.+.+ ...+|++|..++ .+++++.|||++.+. .|+ +..++++||
T Consensus 209 ~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~---~~~~~a~aG~~v~~~l~~i-~~~~i~~G~ 284 (397)
T 1d2e_A 209 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFH---KSLDRAEAGDNLGALVRGL-KREDLRRGL 284 (397)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETT---EEESEEETTCEEEEEESSC-CGGGCCTTC
T ss_pred EEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECC---cccCEecCCCceEEEeccc-chhccCcee
Confidence 9999999999999999999999999999998875 677888887643 678999999976664 344 357899999
Q ss_pred cccCCC
Q 008991 223 TLYHNK 228 (547)
Q Consensus 223 tl~~~~ 228 (547)
+|++++
T Consensus 285 ~l~~~~ 290 (397)
T 1d2e_A 285 VMAKPG 290 (397)
T ss_dssp EEESTT
T ss_pred EEeCCC
Confidence 999765
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=6.7e-29 Score=263.64 Aligned_cols=209 Identities=22% Similarity=0.304 Sum_probs=177.7
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCC--HHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTAD--PDR 92 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~--~~~ 92 (547)
++..++.++|||||||.+|...+.++++.+|++|+|+|++++.+.||.++|..+...++| +++|+||+|+.+.. .+.
T Consensus 70 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~ 149 (405)
T 2c78_A 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDL 149 (405)
T ss_dssp EECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHH
T ss_pred eccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHH
Confidence 455668899999999999999999999999999999999999999999999999999999 88999999997521 122
Q ss_pred HHHHHHH---hcCCC--Cccceecccccccc------------------ccccHHHHHhhCCCCCccccCceeEEEEeee
Q 008991 93 VKAQLKS---MFDLD--PSEALLTSAKTGQG------------------LEHVLPAVIERIPPPRGIINSSLRMLLLDSY 149 (547)
Q Consensus 93 ~~~~i~~---~l~~~--~~~vi~~SAk~g~G------------------v~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~ 149 (547)
..+++.+ .+++. ..+++++||++|.| +.+|+++|.+++|+|....+.|+++.|++++
T Consensus 150 ~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~ 229 (405)
T 2c78_A 150 VEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVF 229 (405)
T ss_dssp HHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEE
T ss_pred HHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEE
Confidence 2333333 33442 35799999999988 8899999999999988888999999999999
Q ss_pred ccccccEEEEEEEecCccccCCEEEEecCC---CeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCccc
Q 008991 150 YDEYKGVICHVAVVDGTLRKGDKISSAATG---QAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTLY 225 (547)
Q Consensus 150 ~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~---~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl~ 225 (547)
+++++|+++++||.+|+|++||.|.+.+.+ ...+|+++..++ .+++++.|||++.+. .|+ +..++++||+|+
T Consensus 230 ~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~---~~~~~a~aG~~v~~~l~g~-~~~~i~~G~~l~ 305 (405)
T 2c78_A 230 TITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR---KTLQEGIAGDNVGVLLRGV-SREEVERGQVLA 305 (405)
T ss_dssp EETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETT---EEESEEETTCEEEEEESSC-CTTTCCTTCEEE
T ss_pred EcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECC---cccCEEcCCCEEEEEECCC-cHhhcCceEEEE
Confidence 999999999999999999999999999987 478899887643 678999999976664 344 357899999999
Q ss_pred CCC
Q 008991 226 HNK 228 (547)
Q Consensus 226 ~~~ 228 (547)
+++
T Consensus 306 ~~~ 308 (405)
T 2c78_A 306 KPG 308 (405)
T ss_dssp STT
T ss_pred cCC
Confidence 765
No 16
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.96 E-value=2e-28 Score=262.48 Aligned_cols=214 Identities=21% Similarity=0.304 Sum_probs=177.8
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCc-------hhhHHHHHHHHhcCCc-E
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQ-------AQTVANFYLAFESELT-I 76 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~lp-i 76 (547)
+|+|.+. ...++.++|||||||.+|...+..+++.||++|||||+++|+. .||.+++..+...++| +
T Consensus 79 ~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~i 158 (439)
T 3j2k_7 79 KGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL 158 (439)
T ss_pred cCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeE
Confidence 6777764 4466799999999999999999999999999999999999976 7999999999999999 9
Q ss_pred EeeeecCCCCCCC-----HHHHHHHHHHh---cCCC---CccceeccccccccccccHH-----------HHHhhCCCCC
Q 008991 77 IPVINKIDQPTAD-----PDRVKAQLKSM---FDLD---PSEALLTSAKTGQGLEHVLP-----------AVIERIPPPR 134 (547)
Q Consensus 77 IvviNKiDl~~~~-----~~~~~~~i~~~---l~~~---~~~vi~~SAk~g~Gv~~Ll~-----------~l~~~ip~p~ 134 (547)
|+|+||+|+...+ .+...+++.+. +++. ..+++++||++|.|++++++ .+++.+|+|.
T Consensus 159 IvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~ 238 (439)
T 3j2k_7 159 IVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFN 238 (439)
T ss_pred EEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCc
Confidence 9999999996543 23334444433 3553 34799999999999999544 4556788888
Q ss_pred ccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-eccc
Q 008991 135 GIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMR 213 (547)
Q Consensus 135 ~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk 213 (547)
...+.|+++.|.+++. +.|+++.|||.+|+|++||.|.+.+++...+|++|... ..++++|.|||.+.+. .|+
T Consensus 239 ~~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~---~~~~~~a~aG~~v~~~l~gi- 312 (439)
T 3j2k_7 239 RSVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSD---DTETDFVAPGENLKIRLKGI- 312 (439)
T ss_pred cCCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEEC---CeEcCEecCCCcceEEEecc-
Confidence 8889999999999976 57999999999999999999999999999999988663 4688999999987764 343
Q ss_pred ccccccccCcccCCCC
Q 008991 214 STKEARIGDTLYHNKS 229 (547)
Q Consensus 214 ~~~~~~~Gdtl~~~~~ 229 (547)
+..+++.||++++++.
T Consensus 313 ~~~~i~rG~vl~~~~~ 328 (439)
T 3j2k_7 313 EEEEILPGFILCDPSN 328 (439)
T ss_pred chhhcCCcEEecCCCC
Confidence 4568899999998763
No 17
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.96 E-value=4e-30 Score=284.28 Aligned_cols=293 Identities=18% Similarity=0.153 Sum_probs=216.7
Q ss_pred EEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC-C-----------
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-D----------- 89 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-~----------- 89 (547)
.++|||||||.+|..++.++++.||++|+|+|+++|++.||.++|..+...++|+++|+||+|+... +
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~s 150 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999642 1
Q ss_pred ---HHHH-----------HHHHHHhcCC------------CCccceeccccccccccccHHHHHhhCCCCC-----cccc
Q 008991 90 ---PDRV-----------KAQLKSMFDL------------DPSEALLTSAKTGQGLEHVLPAVIERIPPPR-----GIIN 138 (547)
Q Consensus 90 ---~~~~-----------~~~i~~~l~~------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~-----~~~~ 138 (547)
.+.+ .+++.+ .++ ...+++++||++|.|+++|+++|...+|.|. .+.+
T Consensus 151 a~~~~~v~~~~~e~i~ei~~~L~e-~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~ 229 (594)
T 1g7s_A 151 SKQDIQVQQKLDTKVYELVGKLHE-EGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEED 229 (594)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH-TTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH-cCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccC
Confidence 0111 112211 122 1237999999999999999999998776432 2457
Q ss_pred CceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCee--EEEEEEeec---------CCcccccccc--cCcE
Q 008991 139 SSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAY--EIVDVGIMH---------PELTPTGVLL--TGQV 205 (547)
Q Consensus 139 ~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~--~v~~i~~~~---------~~~~~v~~~~--aGdi 205 (547)
.|+++.|+++++|++.|+++++||++|+|++||.|.+.+++..+ +|..+..+. .+..+++++. +|++
T Consensus 230 ~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~ 309 (594)
T 1g7s_A 230 SPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIK 309 (594)
T ss_dssp SBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEE
T ss_pred CCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcE
Confidence 89999999999999999999999999999999999999988755 778776653 2356788887 8888
Q ss_pred EEEEecccccccccccCcccCCCCCC----C---CCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEec
Q 008991 206 GYVVTGMRSTKEARIGDTLYHNKSIV----E---PLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKE 278 (547)
Q Consensus 206 g~i~~glk~~~~~~~Gdtl~~~~~~~----~---~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e 278 (547)
+.+. |+ .++.+||||+..++.. . .+.......+.+...+.+...+..++|.++|.++..+=....+-.=
T Consensus 310 v~~~-~l---~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~~~~v~~~~vg~i 385 (594)
T 1g7s_A 310 IVAP-GI---DDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDMYVPIKVADIGDV 385 (594)
T ss_dssp EECS-SC---TTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHTTCCCSEEEESSB
T ss_pred EEEc-cc---CCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhCCCcEEecccCCC
Confidence 7653 44 6779999998875320 0 0111122233344455676778899999999998442211111110
Q ss_pred C-c-----ccc-----cceEEEeecccchHHHHHHHHHHHhCCeeEEecCceeeEE
Q 008991 279 T-S-----TAL-----GLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIF 323 (547)
Q Consensus 279 ~-s-----~~l-----g~~~~~GflG~LHlev~~erL~~e~g~~v~~t~P~V~Yre 323 (547)
+ + .+. -..+.+||-=..+.+ .+++.++.|+++.. .+|+|+-
T Consensus 386 ~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~--~~~~a~~~~v~i~~--~~iiy~l 437 (594)
T 1g7s_A 386 SRRDVVNAGIALQEDRVYGAIIAFNVKVIPS--AAQELKNSDIKLFQ--GNVIYRL 437 (594)
T ss_dssp CHHHHHHHHHHHTTCTTSCEEEEESCCBCHH--HHHHTSSSSSEEEE--ESCHHHH
T ss_pred CHHHHHHHHhhhccCcCCCEEEEeCCcCCHH--HHHHHHHcCCeEEE--CCHHHHH
Confidence 0 0 011 145788885566666 67888888999887 6788874
No 18
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=1.3e-27 Score=256.05 Aligned_cols=208 Identities=22% Similarity=0.267 Sum_probs=175.1
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHH---H
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPD---R 92 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~---~ 92 (547)
...++.++|||||||.+|..++..+++.+|++|+|+|+++|...||.+++..+...++| +|+|+||+|+.+++.+ .
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999888985 8999999999875533 2
Q ss_pred HHHHHHHh---cC--CCCccceecccccccccccc-----------HHHHHhhCCCCCccccCceeEEEEeeeccccccE
Q 008991 93 VKAQLKSM---FD--LDPSEALLTSAKTGQGLEHV-----------LPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGV 156 (547)
Q Consensus 93 ~~~~i~~~---l~--~~~~~vi~~SAk~g~Gv~~L-----------l~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~ 156 (547)
..+++.+. ++ ....+++++||++|.|++++ |..+++.+|.|....+.|+++.|.+++...+.|+
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~ 259 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFR 259 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCce
Confidence 34444443 44 33467999999999999983 3346677888887788999999999987766777
Q ss_pred EEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCC
Q 008991 157 ICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKS 229 (547)
Q Consensus 157 v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~ 229 (547)
...++|.+|+|++||.|.+++.++..+|++|..++ .++++|.|||.+.+. +++..++++||+|+.++.
T Consensus 260 g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~---~~~~~a~aG~~v~~~--l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 260 GFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE---GELEQAGPGQAVTLT--MEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT---EEESEECTTCEEEEE--ESSCCCCCTTCEEEETTS
T ss_pred EEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC---cceeEecCCCEEEEE--eCCccccCCccEEECCCC
Confidence 78899999999999999999999999999998865 468999999998774 455568899999998763
No 19
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.95 E-value=5.3e-28 Score=259.06 Aligned_cols=215 Identities=23% Similarity=0.345 Sum_probs=174.9
Q ss_pred CCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-------CchhhHHHHHHHHhcCCc-
Q 008991 9 GPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESELT- 75 (547)
Q Consensus 9 ~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~lp- 75 (547)
.+|+|.+ ++..++.++|||||||.+|..++.++++.+|++|+|+|+++| +..||.+++..+...++|
T Consensus 67 ~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~ 146 (435)
T 1jny_A 67 ERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQ 146 (435)
T ss_dssp ----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTT
T ss_pred hcCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCe
Confidence 3566664 345678999999999999999999999999999999999999 888999999999999985
Q ss_pred EEeeeecCCCCCCC--H---HHHHHHHHHh---cCCCC--ccceecccccccccc------------ccHHHHHhhCCCC
Q 008991 76 IIPVINKIDQPTAD--P---DRVKAQLKSM---FDLDP--SEALLTSAKTGQGLE------------HVLPAVIERIPPP 133 (547)
Q Consensus 76 iIvviNKiDl~~~~--~---~~~~~~i~~~---l~~~~--~~vi~~SAk~g~Gv~------------~Ll~~l~~~ip~p 133 (547)
+|+|+||+|+.+++ . +.+.+++.+. +++.+ .+++++||++|.|+. .|+++| +.+++|
T Consensus 147 iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l-~~~~~p 225 (435)
T 1jny_A 147 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL-DQLELP 225 (435)
T ss_dssp CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHH-TTCCCC
T ss_pred EEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHH-hccCCC
Confidence 89999999998732 2 3344455444 35432 579999999999997 466765 456667
Q ss_pred CccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-ecc
Q 008991 134 RGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGM 212 (547)
Q Consensus 134 ~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~gl 212 (547)
....+.|+++.|.++|+.++.|+++++||.+|+|++||.|.+.+.+...+|++|..+ ..+++++.|||++.+. .|+
T Consensus 226 ~~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~a~aG~~v~~~l~g~ 302 (435)
T 1jny_A 226 PKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH---HTKMDKAEPGDNIGFNVRGV 302 (435)
T ss_dssp CCGGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET---TEEESEECTTCEEEEEEESS
T ss_pred CCCCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC---CcEEeEEcCCCEEEEEEecC
Confidence 766789999999999999999999999999999999999999999999999999764 3678999999987774 444
Q ss_pred cccccccccCcccCCC
Q 008991 213 RSTKEARIGDTLYHNK 228 (547)
Q Consensus 213 k~~~~~~~Gdtl~~~~ 228 (547)
+..++++||+|+..+
T Consensus 303 -~~~~i~~Gd~l~~~~ 317 (435)
T 1jny_A 303 -EKKDIKRGDVVGHPN 317 (435)
T ss_dssp -CGGGCCTTCEEECTT
T ss_pred -CHHHcCCccEecCCC
Confidence 357899999999875
No 20
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.9e-29 Score=276.94 Aligned_cols=215 Identities=20% Similarity=0.280 Sum_probs=164.9
Q ss_pred CCCeEEEeC-----CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-------chhhHHHHHHHHhcCCc-
Q 008991 9 GPGTSEAHN-----PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-------QAQTVANFYLAFESELT- 75 (547)
Q Consensus 9 ~pG~T~~~~-----~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~lp- 75 (547)
.+|+|.+.. ..++.++|||||||.+|...+..+++.||++|||||+++|. ..||.+++..+...++|
T Consensus 238 ~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~ 317 (592)
T 3mca_A 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISE 317 (592)
T ss_dssp ---------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCC
T ss_pred cCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCe
Confidence 467887653 34578999999999999999999999999999999999864 89999999999999998
Q ss_pred EEeeeecCCCCCCCH---HHHHHHHHHhc----CCC--Cccceecccccccccc--------------ccHHHHHhhCCC
Q 008991 76 IIPVINKIDQPTADP---DRVKAQLKSMF----DLD--PSEALLTSAKTGQGLE--------------HVLPAVIERIPP 132 (547)
Q Consensus 76 iIvviNKiDl~~~~~---~~~~~~i~~~l----~~~--~~~vi~~SAk~g~Gv~--------------~Ll~~l~~~ip~ 132 (547)
+|+|+||+|+.+++. +.+.+++.+.+ ++. ..+++++||++|.|+. .|++.|.+.+|
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p- 396 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP- 396 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-
T ss_pred EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-
Confidence 999999999987553 33455666555 543 2368999999999998 78998887776
Q ss_pred CCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCccccc-ccccCcEEEEE-e
Q 008991 133 PRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTG-VLLTGQVGYVV-T 210 (547)
Q Consensus 133 p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~-~~~aGdig~i~-~ 210 (547)
|....+.|+++.|.+++.+ +.|++++|+|.+|+|++||.|.+++.+...+|++|..++ .+++ ++.|||++.+. .
T Consensus 397 p~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~---~~~~~~a~aG~~v~~~l~ 472 (592)
T 3mca_A 397 PEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNS---DPSSTWAVAGDTVTLQLA 472 (592)
T ss_dssp CSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSS---SCSCCEEETTCEEEEEES
T ss_pred ccccccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcC---ccCcceecCCCEEEEEEc
Confidence 6667789999999999999 999999999999999999999999999999999998643 6788 99999988775 4
Q ss_pred cccccccccccCcccCCCC
Q 008991 211 GMRSTKEARIGDTLYHNKS 229 (547)
Q Consensus 211 glk~~~~~~~Gdtl~~~~~ 229 (547)
|+ +..++++||+|++++.
T Consensus 473 ~i-~~~~i~rG~vl~~~~~ 490 (592)
T 3mca_A 473 DI-EVNQLRPGDILSNYEN 490 (592)
T ss_dssp SS-CGGGCCTTCEEECSSS
T ss_pred cc-cccccceEEEeccCCC
Confidence 44 4568999999998764
No 21
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=1.6e-27 Score=258.57 Aligned_cols=220 Identities=16% Similarity=0.217 Sum_probs=176.1
Q ss_pred CCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-------CchhhHHHHHHHHhcCCc-E
Q 008991 10 PGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESELT-I 76 (547)
Q Consensus 10 pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~lp-i 76 (547)
+|+|.+ ++..++.++|||||||.+|...+..+++.+|++|+|+|+++| ...|+.+++..+...+++ +
T Consensus 95 ~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~i 174 (483)
T 3p26_A 95 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNL 174 (483)
T ss_dssp CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCE
T ss_pred cCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcE
Confidence 466543 345678999999999999999999999999999999999998 668999999999988876 9
Q ss_pred EeeeecCCCCCCCH---HHHHHHHHHh---cCCC--Cccceecccccccccccc------------------HHHHHhhC
Q 008991 77 IPVINKIDQPTADP---DRVKAQLKSM---FDLD--PSEALLTSAKTGQGLEHV------------------LPAVIERI 130 (547)
Q Consensus 77 IvviNKiDl~~~~~---~~~~~~i~~~---l~~~--~~~vi~~SAk~g~Gv~~L------------------l~~l~~~i 130 (547)
|+|+||+|+.+++. ++..+++.+. +++. ..+++++||++|.|++++ ++.+...+
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~ 254 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKI 254 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhc
Confidence 99999999987543 3334444433 3443 347899999999999863 34444444
Q ss_pred CC--CCccccCceeEEEEeeeccc---cccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeec-----CCccccccc
Q 008991 131 PP--PRGIINSSLRMLLLDSYYDE---YKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMH-----PELTPTGVL 200 (547)
Q Consensus 131 p~--p~~~~~~p~~~~v~~~~~d~---~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~-----~~~~~v~~~ 200 (547)
|+ |....+.|+++.|.+++..+ +.|+++.|+|.+|+|++||.|.+++++...+|++|..+. +++.++++|
T Consensus 255 ~~~~p~~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a 334 (483)
T 3p26_A 255 SKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 334 (483)
T ss_dssp HHHHTTCCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCE
T ss_pred ccccccccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEE
Confidence 54 56677899999999999877 489999999999999999999999999999999998873 345789999
Q ss_pred ccCcEEEEEecccccccccccCcccCCCC
Q 008991 201 LTGQVGYVVTGMRSTKEARIGDTLYHNKS 229 (547)
Q Consensus 201 ~aGdig~i~~glk~~~~~~~Gdtl~~~~~ 229 (547)
.|||.+.+.....+..++++||+|++++.
T Consensus 335 ~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 335 IKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred CCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 99999988643334588999999998764
No 22
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.95 E-value=1.1e-27 Score=251.03 Aligned_cols=205 Identities=15% Similarity=0.113 Sum_probs=171.9
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-Eeeee-cCCCCCCC-HHH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVIN-KIDQPTAD-PDR 92 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviN-KiDl~~~~-~~~ 92 (547)
++..++.++|||||||.+|..++.++++.+|++|+||| ++|+..||.+++..+...++|. |+++| |+|+ +.+ .+.
T Consensus 55 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~ 132 (370)
T 2elf_A 55 NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDE 132 (370)
T ss_dssp ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHH
T ss_pred EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHH
Confidence 34566789999999999999999999999999999999 9999999999999999999998 99999 9999 432 233
Q ss_pred HHHHHHHhcC---CCCcccee--ccccc---cccccccHHHHHhhCCCCC---cc-ccCceeEEEEeeeccccccEEEEE
Q 008991 93 VKAQLKSMFD---LDPSEALL--TSAKT---GQGLEHVLPAVIERIPPPR---GI-INSSLRMLLLDSYYDEYKGVICHV 160 (547)
Q Consensus 93 ~~~~i~~~l~---~~~~~vi~--~SAk~---g~Gv~~Ll~~l~~~ip~p~---~~-~~~p~~~~v~~~~~d~~~G~v~~~ 160 (547)
..+++++.+. ....++++ +||++ |.|+++|++.|.+.+|+|. .. ...|+++++.+++..++.|+++++
T Consensus 133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g 212 (370)
T 2elf_A 133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLG 212 (370)
T ss_dssp HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEE
Confidence 4466666553 33468999 99999 9999999999999887652 11 345688889999999999999999
Q ss_pred EEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCcccC
Q 008991 161 AVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTLYH 226 (547)
Q Consensus 161 rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl~~ 226 (547)
||.+|+|++||+|.+.+.+...+|+++..+. .+++++.|||++.+. +|+ +..++++||+|+.
T Consensus 213 ~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~---~~v~~a~aGd~v~i~l~gv-~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 213 VVKQGISKDKDKTKIFPLDRDIEIRSIQSHD---VDIDSAPAGTRVGMRLKNV-QAKDIERGFIISD 275 (370)
T ss_dssp EEEESEEETTCEEEEETTTEEEEEEEEEETT---EEESEEETTCEEEEEEESC-CGGGCCTTCEEES
T ss_pred EEECCEEeeCCEEEECCCCcEEEEeEEEECC---CCccEEcCCCcceEEEecc-CHHHcCCceEEEC
Confidence 9999999999999999999999999997643 678999999977775 444 4578999999987
No 23
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=2.2e-27 Score=273.08 Aligned_cols=216 Identities=20% Similarity=0.280 Sum_probs=178.4
Q ss_pred CCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeec
Q 008991 9 GPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINK 82 (547)
Q Consensus 9 ~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNK 82 (547)
+.|+|.+ ++..++.++|||||||.+|..++.++++.+|++|+|||+++|.+.||.++|..+...++| +|+|+||
T Consensus 342 erGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINK 421 (1289)
T 3avx_A 342 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 421 (1289)
T ss_dssp ------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEEC
T ss_pred cCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEee
Confidence 4677664 355678999999999999999999999999999999999999999999999999889999 7899999
Q ss_pred CCCCCCC--HHHHHHHHHHh---cCCC--Cccceecccccc--------ccccccHHHHHhhCCCCCccccCceeEEEEe
Q 008991 83 IDQPTAD--PDRVKAQLKSM---FDLD--PSEALLTSAKTG--------QGLEHVLPAVIERIPPPRGIINSSLRMLLLD 147 (547)
Q Consensus 83 iDl~~~~--~~~~~~~i~~~---l~~~--~~~vi~~SAk~g--------~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~ 147 (547)
+|+.+.. .+.+.+++.+. +++. ..+++++||++| .|+.+|+++|.+.+|.|....++|+++.|.+
T Consensus 422 iDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~ 501 (1289)
T 3avx_A 422 CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIED 501 (1289)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCE
T ss_pred cccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeeccc
Confidence 9997521 12233344333 3442 358999999999 5899999999999999988889999999999
Q ss_pred eeccccccEEEEEEEecCccccCCEEEEecCC--CeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCcc
Q 008991 148 SYYDEYKGVICHVAVVDGTLRKGDKISSAATG--QAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTL 224 (547)
Q Consensus 148 ~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~--~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl 224 (547)
++.++++|++++++|.+|+|++||+|.+.+.+ ...+|++|..++ .+++++.|||++.+. .|+ +..++++||+|
T Consensus 502 Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~---~~v~eA~AGd~Vgl~L~GI-~~~dI~RGdVL 577 (1289)
T 3avx_A 502 VFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFR---KLLDEGRAGENVGVLLRGI-KREEIERGQVL 577 (1289)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSS---CEESEEETTCEEEEEESSC-CGGGCCTTCEE
T ss_pred cccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecC---ceeeEEecCCcceeEeeec-chhcCCcccEE
Confidence 99999999999999999999999999999987 578888886643 678999999976654 444 35789999999
Q ss_pred cCCC
Q 008991 225 YHNK 228 (547)
Q Consensus 225 ~~~~ 228 (547)
+.++
T Consensus 578 ~~~~ 581 (1289)
T 3avx_A 578 AKPG 581 (1289)
T ss_dssp ESTT
T ss_pred ecCC
Confidence 9865
No 24
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.95 E-value=8.7e-27 Score=247.24 Aligned_cols=204 Identities=20% Similarity=0.205 Sum_probs=171.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHHHHHHhcCC-cEEeeeecCCCCCCC-HHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANFYLAFESEL-TIIPVINKIDQPTAD-PDRVKAQL 97 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~l-piIvviNKiDl~~~~-~~~~~~~i 97 (547)
..++|||||||.+|..++..+++.+|++++|+|++++. ..||.+++..+...+. |+++|+||+|+.+.+ .....+++
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 9999999998888776 799999999997643 23344555
Q ss_pred HHhc---CCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeec--------cccccEEEEEEEecCc
Q 008991 98 KSMF---DLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYY--------DEYKGVICHVAVVDGT 166 (547)
Q Consensus 98 ~~~l---~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~--------d~~~G~v~~~rV~~G~ 166 (547)
.+.+ +....+++++||++|.|+++|+++|.+.+|.|....+.|+++.|.+++. |+++|++++++|.+|+
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~ 234 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGL 234 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCE
Confidence 5544 3335589999999999999999999999999988889999999999874 5669999999999999
Q ss_pred cccCCEEEEecCCC------------eeEEEEEEeecCCcccccccccCcEEEEEec----ccccccccccCcccCCC
Q 008991 167 LRKGDKISSAATGQ------------AYEIVDVGIMHPELTPTGVLLTGQVGYVVTG----MRSTKEARIGDTLYHNK 228 (547)
Q Consensus 167 lk~gd~v~~~~~~~------------~~~v~~i~~~~~~~~~v~~~~aGdig~i~~g----lk~~~~~~~Gdtl~~~~ 228 (547)
|++||+|.+.|.++ ..+|++|... ..++++|.|||.+.+... + +..++..||++++++
T Consensus 235 ~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~a~~G~~v~~~l~~~~~~-~~~d~~~G~vl~~~~ 308 (403)
T 3sjy_A 235 FKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG---DEEFKEAKPGGLVAIGTYLDPSL-TKADNLLGSIITLAD 308 (403)
T ss_dssp EETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET---TEEESEECSSSCEEEEESSCHHH-HGGGTTTTCEEEETT
T ss_pred EecCCEEEEeCCcccccccccccccccEEEEEEEEC---CEEcCEEeCCCEEEEEecccccc-chhhhccccEEeCCC
Confidence 99999999988764 4577777653 478999999998887532 2 235788999998766
No 25
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.94 E-value=1e-26 Score=247.16 Aligned_cols=205 Identities=22% Similarity=0.264 Sum_probs=167.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHHHHHHhcCC-cEEeeeecCCCCCCCH-HHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANFYLAFESEL-TIIPVINKIDQPTADP-DRVKAQL 97 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~l-piIvviNKiDl~~~~~-~~~~~~i 97 (547)
..++|||||||.+|..++.++++.+|++|||+|+++|. +.||.+++..+...++ |+++|+||+|+.+.+. ....+++
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 9999999988887776 5899999999976432 2344555
Q ss_pred HHhcC---CCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeee--------ccccccEEEEEEEecCc
Q 008991 98 KSMFD---LDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSY--------YDEYKGVICHVAVVDGT 166 (547)
Q Consensus 98 ~~~l~---~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~--------~d~~~G~v~~~rV~~G~ 166 (547)
.+.+. ....+++++||++|.|+++|+++|.+.+|.|..+.+.|+++.|.++| +|+++|++++++|.+|+
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~ 242 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGK 242 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCe
Confidence 55543 23458999999999999999999999999998888899999999887 45678999999999999
Q ss_pred cccCCEEEEecCCC------------eeEEEEEEeecCCcccccccccCcEEEEEeccc---ccccccccCcccCCC
Q 008991 167 LRKGDKISSAATGQ------------AYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMR---STKEARIGDTLYHNK 228 (547)
Q Consensus 167 lk~gd~v~~~~~~~------------~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk---~~~~~~~Gdtl~~~~ 228 (547)
|++||.|.+.+.++ ..+|++|.. ...++++|.|||.+.+...+. ...++.+||+++.++
T Consensus 243 l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~---~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~ 316 (410)
T 1kk1_A 243 LKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA---GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPG 316 (410)
T ss_dssp EETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE---TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTT
T ss_pred EeeCCEEEECCCCccccccccccccceeEEEEEEE---CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCC
Confidence 99999999987643 345665553 357899999999776653221 226788999998765
No 26
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.94 E-value=1.8e-26 Score=248.69 Aligned_cols=214 Identities=22% Similarity=0.296 Sum_probs=177.0
Q ss_pred CCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCch-------hhHHHHHHHHhcCCc-E
Q 008991 10 PGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQA-------QTVANFYLAFESELT-I 76 (547)
Q Consensus 10 pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~-------qt~~~~~~~~~~~lp-i 76 (547)
+|+|.+ ++..++.++|||||||.+|..++..+++.+|++|||||+++|... ||.+++..+...++| +
T Consensus 69 ~GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~i 148 (458)
T 1f60_A 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQL 148 (458)
T ss_dssp TTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEE
T ss_pred cCcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeE
Confidence 466643 355678999999999999999999999999999999999998755 999999999889997 8
Q ss_pred EeeeecCCCCCCCH---HHHHHHHHH---hcCCC--Cccceeccccccccccc------------------------cHH
Q 008991 77 IPVINKIDQPTADP---DRVKAQLKS---MFDLD--PSEALLTSAKTGQGLEH------------------------VLP 124 (547)
Q Consensus 77 IvviNKiDl~~~~~---~~~~~~i~~---~l~~~--~~~vi~~SAk~g~Gv~~------------------------Ll~ 124 (547)
|+|+||+|+.+++. +.+.+++.+ .+++. ..+++++||++|.|+.+ |++
T Consensus 149 ivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~ 228 (458)
T 1f60_A 149 IVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLE 228 (458)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHH
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHH
Confidence 99999999985443 233444443 34553 25799999999999863 556
Q ss_pred HHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCc
Q 008991 125 AVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQ 204 (547)
Q Consensus 125 ~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd 204 (547)
+| +.+++|....+.|++++|.+++.+++.|++++|+|.+|.+++||+|.+.|.+...+|+++...+ .+++++.|||
T Consensus 229 ~l-~~~~~p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~---~~~~~a~aG~ 304 (458)
T 1f60_A 229 AI-DAIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHH---EQLEQGVPGD 304 (458)
T ss_dssp HH-HTSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETT---EECSCBCTTC
T ss_pred Hh-hccCCCcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECC---eEEEEEcCCC
Confidence 64 4577787778999999999999999999999999999999999999999999999999997643 5788999999
Q ss_pred EEEEE-ecccccccccccCcccCCC
Q 008991 205 VGYVV-TGMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 205 ig~i~-~glk~~~~~~~Gdtl~~~~ 228 (547)
.+.+. .|+ +..+++.||+|+..+
T Consensus 305 ~v~i~l~gi-~~~~i~rG~vl~~~~ 328 (458)
T 1f60_A 305 NVGFNVKNV-SVKEIRRGNVCGDAK 328 (458)
T ss_dssp EEEEEESSC-CTTTSCTTCEEEETT
T ss_pred EEEEEEcCC-cccccCceeEEecCC
Confidence 76664 354 347899999999875
No 27
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.94 E-value=4.6e-27 Score=253.87 Aligned_cols=213 Identities=19% Similarity=0.287 Sum_probs=159.5
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-------chhhHHHHHHHHhcCCc-E
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-------QAQTVANFYLAFESELT-I 76 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-------~~qt~~~~~~~~~~~lp-i 76 (547)
.|+|.+. ...++.++|||||||.+|..++.++++.+|++|||||+++|+ ..||.+++..+...++| +
T Consensus 105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 4666543 234678999999999999999999999999999999999986 37999999999999998 9
Q ss_pred EeeeecCCCCCCC--H---HHHHHHHHHh---c-CCC---CccceeccccccccccccH-------------HHHHhhCC
Q 008991 77 IPVINKIDQPTAD--P---DRVKAQLKSM---F-DLD---PSEALLTSAKTGQGLEHVL-------------PAVIERIP 131 (547)
Q Consensus 77 IvviNKiDl~~~~--~---~~~~~~i~~~---l-~~~---~~~vi~~SAk~g~Gv~~Ll-------------~~l~~~ip 131 (547)
|+|+||+|+...+ . +.+.+++.+. + ++. ..+++++||++|.|+.+++ ..+++.+|
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~ 264 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMT 264 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCC
T ss_pred EEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCC
Confidence 9999999996532 2 2333344333 2 554 4579999999999998754 34456788
Q ss_pred CCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-e
Q 008991 132 PPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-T 210 (547)
Q Consensus 132 ~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~ 210 (547)
.|....++||++.|.+++.+ .|++++|+|.+|+|++||.|.+++.+...+|++|... ...+++++.|||.+.+. .
T Consensus 265 ~~~~~~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~--~~~~~~~a~aG~~v~i~l~ 340 (467)
T 1r5b_A 265 HLERKVNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE--ADEEISSSICGDQVRLRVR 340 (467)
T ss_dssp CCHHHHTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT--TCCEESEEETTCEEEEEEE
T ss_pred CCcCCCCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc--CCcEeeEEcCCCEEEEEEe
Confidence 88777789999999999764 7999999999999999999999999988999987653 24678999999977774 3
Q ss_pred cccccccccccCcccCCC
Q 008991 211 GMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 211 glk~~~~~~~Gdtl~~~~ 228 (547)
| +..++++||+|++++
T Consensus 341 g--~~~~i~rG~vl~~~~ 356 (467)
T 1r5b_A 341 G--DDSDVQTGYVLTSTK 356 (467)
T ss_dssp S--CCTTCCTTCEEECSS
T ss_pred c--cHhhCCceEEEeCCC
Confidence 4 578999999999876
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=1.9e-26 Score=245.01 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=163.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHHHHHHhcCC-cEEeeeecCCCCCCCH-HHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANFYLAFESEL-TIIPVINKIDQPTADP-DRVKAQL 97 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~l-piIvviNKiDl~~~~~-~~~~~~i 97 (547)
+.++|||||||.+|..++.++++.+|++|||+|+++|. +.||.+++..+...++ |+++|+||+|+...+. ....+++
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 8999999988887776 6999999999976532 2334455
Q ss_pred HHhcC---CCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeee--------ccccccEEEEEEEecCc
Q 008991 98 KSMFD---LDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSY--------YDEYKGVICHVAVVDGT 166 (547)
Q Consensus 98 ~~~l~---~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~--------~d~~~G~v~~~rV~~G~ 166 (547)
.+.+. ....+++++||++|.|+++|+++|.+.+|.|..+.+.|+++.|.++| +++++|+++.++|.+|+
T Consensus 161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~ 240 (408)
T 1s0u_A 161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGV 240 (408)
T ss_dssp HHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESC
T ss_pred HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECe
Confidence 54432 23458999999999999999999999999998888999999999887 45568999999999999
Q ss_pred cccCCEEEEecCCC------------eeEEEEEEeecCCcccccccccCcEEEEEecc---cccccccccCcccCCC
Q 008991 167 LRKGDKISSAATGQ------------AYEIVDVGIMHPELTPTGVLLTGQVGYVVTGM---RSTKEARIGDTLYHNK 228 (547)
Q Consensus 167 lk~gd~v~~~~~~~------------~~~v~~i~~~~~~~~~v~~~~aGdig~i~~gl---k~~~~~~~Gdtl~~~~ 228 (547)
|++||.|.+.|.++ ..+|++|... ..++++|.|||.+.+...+ -+..++++||+++.++
T Consensus 241 l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~ 314 (408)
T 1s0u_A 241 FKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG---NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPG 314 (408)
T ss_dssp EETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET---TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTT
T ss_pred EecCCEEEEcCCcccccccccccccceeEEEEEEEC---CEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCC
Confidence 99999999987542 3566666553 4678999999988885421 1236788999998765
No 29
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-26 Score=257.23 Aligned_cols=220 Identities=16% Similarity=0.219 Sum_probs=176.7
Q ss_pred CCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC-------CchhhHHHHHHHHhcCCc-E
Q 008991 10 PGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG-------VQAQTVANFYLAFESELT-I 76 (547)
Q Consensus 10 pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~~~~~~~~~~~lp-i 76 (547)
+|+|.+. ...++.++|||||||.+|...+..+++.+|++|+|||+++| ...||.+++..+...++| +
T Consensus 229 ~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~i 308 (611)
T 3izq_1 229 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNL 308 (611)
T ss_dssp TTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEE
T ss_pred CCeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeE
Confidence 5776643 44567999999999999999999999999999999999987 568999999999988977 9
Q ss_pred EeeeecCCCCCCCH---HHHHHHHHHh---cCCC--Cccceecccccccccccc--------------HHHHHhhC----
Q 008991 77 IPVINKIDQPTADP---DRVKAQLKSM---FDLD--PSEALLTSAKTGQGLEHV--------------LPAVIERI---- 130 (547)
Q Consensus 77 IvviNKiDl~~~~~---~~~~~~i~~~---l~~~--~~~vi~~SAk~g~Gv~~L--------------l~~l~~~i---- 130 (547)
|+|+||+|+.+++. +.+.+++... +++. ..+++++||++|.|+.++ |..+.+.+
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~ 388 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKI 388 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCC
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcc
Confidence 99999999987543 3333444333 3543 347899999999999875 22333333
Q ss_pred CC--CCccccCceeEEEEeeeccc---cccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeec-----CCccccccc
Q 008991 131 PP--PRGIINSSLRMLLLDSYYDE---YKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMH-----PELTPTGVL 200 (547)
Q Consensus 131 p~--p~~~~~~p~~~~v~~~~~d~---~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~-----~~~~~v~~~ 200 (547)
|. |....+.|+++.|.+++..+ +.|+++.|+|.+|+|++||.|.++|.+...+|++|..+. +++.++++|
T Consensus 389 p~~~p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A 468 (611)
T 3izq_1 389 SKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 468 (611)
T ss_dssp CCSSSCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCE
T ss_pred cccCcccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEccccccccccccccee
Confidence 33 44567899999999999987 589999999999999999999999999999999998763 345789999
Q ss_pred ccCcEEEEEecccccccccccCcccCCCC
Q 008991 201 LTGQVGYVVTGMRSTKEARIGDTLYHNKS 229 (547)
Q Consensus 201 ~aGdig~i~~glk~~~~~~~Gdtl~~~~~ 229 (547)
.|||.+.+...-.+..++++||+|++++.
T Consensus 469 ~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 469 IKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp ETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred cCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 99999888532234578999999998764
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.94 E-value=1.2e-27 Score=259.29 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=174.4
Q ss_pred CCCeEEEeCC-----CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecC
Q 008991 9 GPGTSEAHNP-----SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKI 83 (547)
Q Consensus 9 ~pG~T~~~~~-----~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKi 83 (547)
.+|+|.+... .++.++|||||||.+|..++..+++.+|++++|+|+++|++.||.+++..+...++|.|+|+||+
T Consensus 56 ~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~ 135 (482)
T 1wb1_A 56 KRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKS 135 (482)
T ss_dssp --------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECT
T ss_pred cCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4566665432 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-HHHHHHHHHHhc----CCCCccceeccccccccccccHHHHHhhCCCC--CccccCceeEEEEeeeccccccE
Q 008991 84 DQPTAD-PDRVKAQLKSMF----DLDPSEALLTSAKTGQGLEHVLPAVIERIPPP--RGIINSSLRMLLLDSYYDEYKGV 156 (547)
Q Consensus 84 Dl~~~~-~~~~~~~i~~~l----~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p--~~~~~~p~~~~v~~~~~d~~~G~ 156 (547)
|+.+.+ .+...+++.+.+ ++...+++++||++|.|+++|+++|.+.++.| ..+.++|+++.+.+++..++.|+
T Consensus 136 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~ 215 (482)
T 1wb1_A 136 DNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGT 215 (482)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCC
T ss_pred CcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCce
Confidence 997532 344455555543 44456899999999999999999999987655 55667899999999999999999
Q ss_pred EEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-ecccccccccccCccc
Q 008991 157 ICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRSTKEARIGDTLY 225 (547)
Q Consensus 157 v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~~~~~~Gdtl~ 225 (547)
++.++|.+|+|++||.|.+.|.+...+|+++..+ ..+++++.|||.+.+. .|+ +..+++.||+++
T Consensus 216 v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~v~~a~~G~~v~~~l~~~-~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 216 VVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF---KESVMEAKAGDRVGMAIQGV-DAKQIYRGXILT 281 (482)
T ss_dssp EECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG---GSCBCCCCSSCCCCEECSSC-CSSCCCSSCBCC
T ss_pred EEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC---CeEeeEecCCCEEEEEecCC-CHhhccccceEe
Confidence 9999999999999999999999988888877654 3678999999977765 354 346789999994
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.93 E-value=1.1e-26 Score=251.19 Aligned_cols=292 Identities=22% Similarity=0.296 Sum_probs=209.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
.+..++|||||||.+|..++.++++.+|+++||+|+++|.+.||.++|..+...++|+|+++||+|+++++++++.+++.
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~ 128 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELS 128 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999998765543333222
Q ss_pred HhcCC------CCccceeccccccccccccHHHHHhhC--CCCCccccCceeEEEEeeeccccccEEEEEEEecCccccC
Q 008991 99 SMFDL------DPSEALLTSAKTGQGLEHVLPAVIERI--PPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKG 170 (547)
Q Consensus 99 ~~l~~------~~~~vi~~SAk~g~Gv~~Ll~~l~~~i--p~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~g 170 (547)
+. ++ ...+++++||++|.|+++|+++|.... +.+...++.|+.+.|++++.++++|++++++|.+|+|++|
T Consensus 129 ~~-~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~G 207 (501)
T 1zo1_I 129 QY-GILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKG 207 (501)
T ss_dssp CC-CCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTT
T ss_pred Hh-hhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecC
Confidence 11 11 124799999999999999999998643 3444456789999999999999999999999999999999
Q ss_pred CEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCCCCC--CCCCC------------
Q 008991 171 DKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNKSIV--EPLPG------------ 236 (547)
Q Consensus 171 d~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~~~~--~~l~~------------ 236 (547)
|.+.+.+ ...+|+.+.. .+..+++++.||+.+.+. |+.+ ....||+++...+.. ..+..
T Consensus 208 d~v~~g~--~~~kVr~i~~--~~g~~v~~a~~g~~V~i~-gl~~--~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~ 280 (501)
T 1zo1_I 208 DIVLCGF--EYGRVRAMRN--ELGQEVLEAGPSIPVEIL-GLSG--VPAAGDEVTVVRDEKKAREVALYRQGKFREVKLA 280 (501)
T ss_dssp CEEEEEB--SSCEEEEECC--TTTTSEEEECCSSCSSSE-EECS--CCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHH
T ss_pred CEEEEcc--ceeEEEEEEe--cCCCcCcEeccCCcEEEe-CCCC--CCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9998765 3346665432 234568899999977665 6532 247899887543210 00100
Q ss_pred -------------CCC-CcceEEeeeccCCCCchhHHHHHHHhhhcCCceeEEEecC------c----ccccceEEEeec
Q 008991 237 -------------FKP-AKHMVFSGLYPADGSDFEVLNHAIERLTCNDASVSVTKET------S----TALGLGFRCGFL 292 (547)
Q Consensus 237 -------------~~~-~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~v~~e~------s----~~lg~~~~~Gfl 292 (547)
+.. ..+.+...+.+...+..+.|.++|.+|..++..+.+-... + .+.-..+.+||
T Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~f- 359 (501)
T 1zo1_I 281 RQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGF- 359 (501)
T ss_dssp HHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEEC-
T ss_pred hhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEEEeccCCCCHHHHHHHHhcCCEEEEe-
Confidence 100 1222333444444566899999999999888877765421 0 01124577888
Q ss_pred ccchHHHHHHHHHHHhCCeeEEecCceeeE
Q 008991 293 GLLHMDVFHQRLEQEYGAHVISTVPTVPYI 322 (547)
Q Consensus 293 G~LHlev~~erL~~e~g~~v~~t~P~V~Yr 322 (547)
.+..+--.+++.++.|+++... .|+|+
T Consensus 360 -nv~~~~~~~~~a~~~~v~i~~~--~iiy~ 386 (501)
T 1zo1_I 360 -NVRADASARKVIEAESLDLRYY--SVIYN 386 (501)
T ss_dssp -SSCCCHHHHTTSCSSSSCEEES--CCCSH
T ss_pred -cCCCCHHHHHHHHHcCCEEEEe--CHHHH
Confidence 3334444456666668877663 46665
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.92 E-value=3.4e-26 Score=249.28 Aligned_cols=214 Identities=24% Similarity=0.298 Sum_probs=173.1
Q ss_pred CCCCeEEEeC------CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeee
Q 008991 8 NGPGTSEAHN------PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~~~------~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviN 81 (547)
..||+|.+.. ..+..++|||||||.+|...+.++++.+|+++||+|+++|.++||.++|..+...++|+|+|+|
T Consensus 33 ~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViN 112 (537)
T 3izy_P 33 EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAIN 112 (537)
T ss_dssp SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCB
T ss_pred cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEe
Confidence 3467776552 1345789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHhcC----C-CCccceeccccccccccccHHHHHhhCC--CCCccccCceeEEEEeeeccccc
Q 008991 82 KIDQPTADPDRVKAQLKSMFD----L-DPSEALLTSAKTGQGLEHVLPAVIERIP--PPRGIINSSLRMLLLDSYYDEYK 154 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~----~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip--~p~~~~~~p~~~~v~~~~~d~~~ 154 (547)
|+|+++++.+...+++.+.-- + ...+++++||++|.|+++|+++|...++ .+...++.|+++.|++++++++.
T Consensus 113 KiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~ 192 (537)
T 3izy_P 113 KCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGR 192 (537)
T ss_dssp SGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTC
T ss_pred cccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCC
Confidence 999987665444444443210 1 1247899999999999999999988654 44556788999999999999999
Q ss_pred cEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCC
Q 008991 155 GVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNK 228 (547)
Q Consensus 155 G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~ 228 (547)
|++++++|.+|+|++||.+.. .....+|+.+...+ ..++++|.||+++.+. |+++ ....||+|+..+
T Consensus 193 G~V~~g~V~~G~l~~Gd~v~~--g~~~~kVr~i~~~~--g~~v~~A~~G~~V~i~-g~~~--~~~~Gd~l~~~~ 259 (537)
T 3izy_P 193 GPVTTAIIQRGTLRKGSILVA--GKSWAKVRLMFDEN--GRAVNEAYPSMPVGII-GWRD--LPSAGDEILEVE 259 (537)
T ss_dssp CCCEEEEEEEECCSSEEEECC--SSCCEEEEEEEECC--CCCSCCSCCSTTCCCC-SSEE--EEEEESSCCSCC
T ss_pred ceEEEEEEecCEEEcCCEEEe--CCceEEEEEEEcCC--CCCCcEEcCCCEEEEE-CCCC--CCCCCCEEEecC
Confidence 999999999999999999843 23446777765443 3678999999998775 7642 348899999875
No 33
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=5.9e-22 Score=210.56 Aligned_cols=218 Identities=20% Similarity=0.218 Sum_probs=155.8
Q ss_pred CCCCCeEEEeCC------CceEEEEEeCCCccchHH-------HHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHNP------SSFLLNLIDTPGHVDFSY-------EVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~~------~~~~l~liDTPGh~df~~-------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
++++|+|.+... ....++|||||||.+|.. .+..++..+|++++|+|+ +...++..++..+.+.+
T Consensus 63 ~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~ 140 (423)
T 3qq5_A 63 SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEME 140 (423)
T ss_dssp -------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTT
T ss_pred CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcC
Confidence 467787765421 223899999999998753 356778889999999999 77888999999999999
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC--------------------
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP-------------------- 133 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p-------------------- 133 (547)
+|+++|+||+|+...+..+..+++.+.++. +++++||++|.|++++++.|.+.++.+
T Consensus 141 ~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~---~v~~vSAktg~gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~ 217 (423)
T 3qq5_A 141 IPFVVVVNKIDVLGEKAEELKGLYESRYEA---KVLLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVV 217 (423)
T ss_dssp CCEEEECCCCTTTTCCCTHHHHHSSCCTTC---CCCCCSSCCTTSTTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEEC
T ss_pred CCEEEEEeCcCCCCccHHHHHHHHHHHcCC---CEEEEECCCCCCHHHHHHHHHHhhhhhccCcchhhccccCceEEEEe
Confidence 999999999999877665555555554543 789999999999999999999999543
Q ss_pred -------CccccCceeEEEEeeeccccccEEEEEEEecCccccC-CEEEEecCCCeeEEEEEEeecCCccccccccc---
Q 008991 134 -------RGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKG-DKISSAATGQAYEIVDVGIMHPELTPTGVLLT--- 202 (547)
Q Consensus 134 -------~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~g-d~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~a--- 202 (547)
.+....|....+.+.+++.+.+.++..+.+.+.|+.. +...++-++... ..+++...|...+..+.+.
T Consensus 218 pid~~~pkgr~ilp~~~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv~tdsq~-~~~v~~~~p~~~~~t~~s~l~a 296 (423)
T 3qq5_A 218 PIDLGAPKGRLIMPQVHAIREALDREAIALVVKERELRYVMENIGMKPKLVITDSQV-AMKVASDVPEDVELTTFSIVES 296 (423)
T ss_dssp CCSCCSSTTCCCHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCCCBCTTH-HHHHHHTCCCSSSCCCBHHHHH
T ss_pred eccccCcCCccccchHHHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEEEeccHH-HHHHhccCCCCCCcccHHHHhh
Confidence 2222223345566677777777777777667777554 222222233222 2455566776666655555
Q ss_pred ---CcEEEEEecccccccccccCcccCCCCC
Q 008991 203 ---GQVGYVVTGMRSTKEARIGDTLYHNKSI 230 (547)
Q Consensus 203 ---Gdig~i~~glk~~~~~~~Gdtl~~~~~~ 230 (547)
||+++++.|++.+++++.|||++.++.+
T Consensus 297 ~~kG~~~~~~~g~~~~~~~~~gd~v~~~e~c 327 (423)
T 3qq5_A 297 RYRGDLAYFVESVRKIEELEDGDTVVIMEGC 327 (423)
T ss_dssp HHSSCSHHHHHHHHTTTTCCTTCEEEEECCS
T ss_pred ccCCCHHHHHHHHHHHHhCCCCCEEEEeccC
Confidence 9999999999999999999999887743
No 34
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=5.6e-15 Score=150.39 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=99.1
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc--------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc-
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD--------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES- 72 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d--------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~- 72 (547)
|+.||||++. ...+++++||||||+.+ |...+..+++.+|++++|+|++++.+.++...+..+...
T Consensus 36 s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~ 115 (301)
T 1wf3_A 36 SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLV 115 (301)
T ss_dssp CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT
T ss_pred cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc
Confidence 5678988753 34578999999999987 777888899999999999999999888877777777666
Q ss_pred -CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 73 -ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 73 -~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
++|+++|+||+|+.+.+.. ..+.+.+. ....+++++||++|.|++++++.|.+.+|.
T Consensus 116 ~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 116 GKVPILLVGNKLDAAKYPEE-AMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TTSCEEEEEECGGGCSSHHH-HHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CCCCEEEEEECcccCCchHH-HHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 8999999999999764321 33444443 334578999999999999999999998864
No 35
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.54 E-value=1.1e-14 Score=148.57 Aligned_cols=125 Identities=21% Similarity=0.277 Sum_probs=102.3
Q ss_pred CCCCCeEEEe-----CCC-ceEEEEEeCCCccchH----------HHHHHHHhhcCEEEEEEECCCCCchhhHHH-HHHH
Q 008991 7 LNGPGTSEAH-----NPS-SFLLNLIDTPGHVDFS----------YEVSRSLAACQGALLVVDAAQGVQAQTVAN-FYLA 69 (547)
Q Consensus 7 s~~pG~T~~~-----~~~-~~~l~liDTPGh~df~----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~ 69 (547)
|++||+|+.. ... +++++||||||+.++. ..+..++..+|++++|+|++++.+.++... +..+
T Consensus 39 s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l 118 (308)
T 3iev_A 39 SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 118 (308)
T ss_dssp CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT
T ss_pred CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH
Confidence 6788988753 234 7899999999996544 677888999999999999999999999888 5666
Q ss_pred HhcCCcEEeeeecCCCC-C-CCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 70 FESELTIIPVINKIDQP-T-ADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~-~-~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
...++|+++|+||+|+. . .......+++.+.++ ...+++++||++|.|++++++.|.+.+|.
T Consensus 119 ~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 119 KPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP-ELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp GGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT-TCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred HhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc-CCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 77789999999999996 3 234555667777664 23478999999999999999999999875
No 36
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.51 E-value=4.1e-14 Score=132.55 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=86.7
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh---------cCCcEEeeeecCCCCC
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE---------SELTIIPVINKIDQPT 87 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---------~~lpiIvviNKiDl~~ 87 (547)
++..+.++||||||+.+|...+..+++.+|++++|+|++++...++...+..+.. .++|+++|+||+|+.+
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 4567899999999999999999999999999999999997765555444433322 5789999999999976
Q ss_pred CCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 88 ADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 88 ~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
....+..+++.+..+. .+++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 150 ALPVEMVRAVVDPEGK--FPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CCCHHHHHHHHCTTCC--SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCC--ceEEEEecCCCcCHHHHHHHHHHHH
Confidence 5333323333333332 2789999999999999999998765
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.49 E-value=2e-14 Score=138.34 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=94.3
Q ss_pred CCCCCeEEEe-----C-CCceEEEEEeCCCcc----------chHHHHHHHHhh---cCEEEEEEECCCCCchhhHHHHH
Q 008991 7 LNGPGTSEAH-----N-PSSFLLNLIDTPGHV----------DFSYEVSRSLAA---CQGALLVVDAAQGVQAQTVANFY 67 (547)
Q Consensus 7 s~~pG~T~~~-----~-~~~~~l~liDTPGh~----------df~~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~ 67 (547)
+++||+|++. . ..+..++||||||+. .|...+..++.. +|++++|+|++++.+.....++.
T Consensus 59 ~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~ 138 (223)
T 4dhe_A 59 SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIE 138 (223)
T ss_dssp TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH
T ss_pred cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHH
Confidence 5778887764 2 345789999999963 345555555655 78899999999988888888888
Q ss_pred HHHhcCCcEEeeeecCCCCCCCH-HHHHHHHHHhcC-------CCCccceeccccccccccccHHHHHhhCCCCCc
Q 008991 68 LAFESELTIIPVINKIDQPTADP-DRVKAQLKSMFD-------LDPSEALLTSAKTGQGLEHVLPAVIERIPPPRG 135 (547)
Q Consensus 68 ~~~~~~lpiIvviNKiDl~~~~~-~~~~~~i~~~l~-------~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~ 135 (547)
.+...++|+++|+||+|+...+. ....+++.+.+. ....+++++||++|.|++++++.|.+.++.+..
T Consensus 139 ~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 139 WFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 88788999999999999965322 222333333221 134579999999999999999999999987654
No 38
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.49 E-value=3.4e-14 Score=128.76 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=86.4
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESEL 74 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l 74 (547)
+++|++|.+. ...+..+++|||||+.+ +...+...+..+|++++|+|++++.+.............+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 109 (161)
T 2dyk_A 30 ADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109 (161)
T ss_dssp --------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTC
T ss_pred cCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCC
Confidence 3456666543 22346889999999987 55667778899999999999999877766666666667799
Q ss_pred cEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 75 TIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 75 piIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+++|+||+|+.+.+ +++.+...+...+++++||++|.|+++++++|.+.+|
T Consensus 110 p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 110 PVILVATKVDDPKHE-----LYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp CEEEEEECCCSGGGG-----GGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred CEEEEEECcccccch-----HhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 999999999996542 1222222222236899999999999999999998875
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=9.6e-14 Score=130.74 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=94.3
Q ss_pred CCCCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEE
Q 008991 7 LNGPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTII 77 (547)
Q Consensus 7 s~~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiI 77 (547)
++++|+++. .++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|.. +.. .++|++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 132 (192)
T 2fg5_A 53 SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132 (192)
T ss_dssp CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 467787653 35677899999999999999999999999999999999998776666554433 333 278999
Q ss_pred eeeecCCCCCCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 78 PVINKIDQPTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 78 vviNKiDl~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
+|+||+|+...+ ..+..+++.+.++ .+++++||++|.|++++++.|.+.++..
T Consensus 133 iv~NK~Dl~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 133 IAGNKCDLSDIREVPLKDAKEYAESIG---AIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHTTT---CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred EEEECcccccccccCHHHHHHHHHHcC---CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 999999996421 1222334444444 4789999999999999999999988654
No 40
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.48 E-value=4.8e-14 Score=132.71 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=94.5
Q ss_pred CCCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHHhc-----------C
Q 008991 7 LNGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAFES-----------E 73 (547)
Q Consensus 7 s~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~-----------~ 73 (547)
+++.|++.. +++..+.++||||||+.+|...+..+++.+|++|+|+|++++.+.+.. .++...... +
T Consensus 48 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (199)
T 4bas_A 48 TATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR 127 (199)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCB
T ss_pred ccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCC
Confidence 456776554 456789999999999999999999999999999999999998766664 344444333 8
Q ss_pred CcEEeeeecCCCCCCC-HHHHHHHHHH--hcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 74 LTIIPVINKIDQPTAD-PDRVKAQLKS--MFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 74 lpiIvviNKiDl~~~~-~~~~~~~i~~--~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+|+++|+||+|+.... .+++.+.+.. .......+++++||++|.||++++++|.+.+.
T Consensus 128 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 128 VPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp CCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred CCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 9999999999997653 2333333221 11223457899999999999999999998764
No 41
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.47 E-value=1.1e-13 Score=126.22 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=75.6
Q ss_pred CCCCCeEEE----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEE
Q 008991 7 LNGPGTSEA----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTII 77 (547)
Q Consensus 7 s~~pG~T~~----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiI 77 (547)
++++|+++. .++..+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....| ..... .++|++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 110 (166)
T 3q72_A 31 AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 110 (166)
T ss_dssp -----CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEE
T ss_pred CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 457787765 467788999999999999999999999999999999999986655554433 33333 378999
Q ss_pred eeeecCCCCCCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 78 PVINKIDQPTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 78 vviNKiDl~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+|+||+|+...+ .....+++....+ .+++++||++|.|+++++++|.+.+
T Consensus 111 lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 111 LVGNKSDLVRSREVSVDEGRACAVVFD---CKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp EEEECTTCCSSCCSCHHHHHHHHHHTT---CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EEEeccccccccccCHHHHHHHHHHhC---CcEEEeccCCCCCHHHHHHHHHHHH
Confidence 999999997543 1223344444444 3789999999999999999998754
No 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.47 E-value=1.7e-13 Score=126.78 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=88.5
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHhc---CCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFES---ELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~---~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.++||||||+.+|...+...++.+|++++|+|+++..+.+....| ..+... ++|+++|+||+|+...+.
T Consensus 56 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~ 135 (181)
T 2efe_B 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV 135 (181)
T ss_dssp ETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS
T ss_pred ECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccC
Confidence 456678999999999999999999999999999999999987665554444 333332 788999999999965321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.+..+++.+..+ .+++++||++|.|+++++++|.+.++..
T Consensus 136 ~~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 136 TAEDAQTYAQENG---LFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CHHHHHHHHHHTT---CEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 222334444444 3789999999999999999999988654
No 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.47 E-value=3.9e-13 Score=122.30 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=86.2
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.+..++.+++|||||+.+|...+..++..+|++++|+|+++..+.+....| ..... .+.|+++|+||+|+.+..
T Consensus 39 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (164)
T 1r8s_A 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118 (164)
T ss_dssp EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC
Confidence 455678999999999999999999999999999999999987655554333 33322 378999999999997643
Q ss_pred HHHHHHHHHHh-cCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 PDRVKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ~~~~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+++.+++... ......+++++||++|.|+++++++|.+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 23332222211 1112346899999999999999999998774
No 44
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.7e-13 Score=128.19 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=84.0
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCC-HHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTAD-PDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~-~~~ 92 (547)
+++.+++|||||+.+|...+..++..+|++++|+|++++.+.+....| ..... .+.|+++|+||+|+.+.. .++
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 137 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 137 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH
Confidence 458999999999999998889999999999999999998666654433 33332 479999999999997643 333
Q ss_pred HHHHHHHh-cCCCCccceeccccccccccccHHHHHhhCCCCCc
Q 008991 93 VKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRG 135 (547)
Q Consensus 93 ~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~ 135 (547)
..+.+... +.....+++++||++|.|+++++++|.+.++.+..
T Consensus 138 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 138 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 33333221 22223478999999999999999999998876543
No 45
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.46 E-value=9.9e-14 Score=130.28 Aligned_cols=125 Identities=17% Similarity=0.256 Sum_probs=91.9
Q ss_pred CCCCCeEEEeCC--CceEEEEEeCCC----------ccchHHHHHHHHhhc---CEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 7 LNGPGTSEAHNP--SSFLLNLIDTPG----------HVDFSYEVSRSLAAC---QGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~~~~--~~~~l~liDTPG----------h~df~~~~~~~l~~a---D~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
++++|+|+.... .+..+++||||| +..|...+..++..+ |++++|+|++++.+.+....+..+..
T Consensus 53 ~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 132 (195)
T 1svi_A 53 SSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY 132 (195)
T ss_dssp -------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred CCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777765421 122588999999 666777777777777 99999999999988888777777777
Q ss_pred cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhCC
Q 008991 72 SELTIIPVINKIDQPTAD-PDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.++|+++|+||+|+...+ .....+++.+.+.. ...+++++||++|.|+++++++|.+.++
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 899999999999997643 34445666665543 2357899999999999999999987654
No 46
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.45 E-value=1.6e-13 Score=132.87 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=92.4
Q ss_pred EEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HH---hcCCcEEeeeecCCCCCCC
Q 008991 14 EAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AF---ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 14 ~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~---~~~lpiIvviNKiDl~~~~ 89 (547)
...++..+.++||||+|+++|...+..+++.+|++++|+|.++..+.+....|.. .. ..++|+++|+||+|+...+
T Consensus 55 ~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 55 MYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp EECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred EEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence 3457788999999999999999999999999999999999999877777655533 22 2478999999999996542
Q ss_pred H--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 P--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
. .+..+++.+.++. +++++||++|.||+++|+.|++.++.
T Consensus 135 ~V~~~e~~~~a~~~~~---~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 135 QVSIEEGERKAKELNV---MFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp CSCHHHHHHHHHHHTC---EEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred cccHHHHhhHHHHhCC---eeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 1 2234555666664 68999999999999999999998864
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=3e-13 Score=123.31 Aligned_cols=121 Identities=25% Similarity=0.261 Sum_probs=92.0
Q ss_pred CCCCeEE-----EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEe
Q 008991 8 NGPGTSE-----AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIP 78 (547)
Q Consensus 8 ~~pG~T~-----~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIv 78 (547)
+++|.++ ..++..+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....|. .... .++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 113 (170)
T 1ek0_A 34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL 113 (170)
T ss_dssp CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4556544 24566789999999999999999999999999999999999876666554443 2222 4789999
Q ss_pred eeecCCCCCCC-----HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 79 VINKIDQPTAD-----PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 79 viNKiDl~~~~-----~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+||+|+...+ .....+++....+. +++++||++|.|+++++++|.+.++
T Consensus 114 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 114 VGNKIDXLQEGGERKVAREEGEKLAEEKGL---LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EEECGGGGGSSCCCCSCHHHHHHHHHHHTC---EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEECCCccccccccCCCHHHHHHHHHHcCC---EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999985431 12233444444453 7899999999999999999998775
No 48
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.45 E-value=3.3e-14 Score=131.22 Aligned_cols=112 Identities=34% Similarity=0.440 Sum_probs=91.2
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~ 98 (547)
.+..+++|||||+.+|...+.+++..+|++++|+|++++...++.+.+..+...++|+++|+||+|+...+.++..+.+.
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 132 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELM 132 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHT
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHH
Confidence 34678899999999998888888899999999999999888888888877777899999999999998766555554443
Q ss_pred HhcCCC-----CccceeccccccccccccHHHHHhhC
Q 008991 99 SMFDLD-----PSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 99 ~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+.-.+. ..+++++||++|.|+++++++|.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 133 EYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp TTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred hcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 321110 14789999999999999999998754
No 49
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.45 E-value=2.7e-13 Score=123.74 Aligned_cols=122 Identities=18% Similarity=0.148 Sum_probs=93.4
Q ss_pred CCCCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEE
Q 008991 7 LNGPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTII 77 (547)
Q Consensus 7 s~~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiI 77 (547)
++++|+++. .++..+.+.+|||||+.+|...+...++.+|++++|+|+++..+.+....| ..+.. .++|++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ii 115 (170)
T 1z0j_A 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115 (170)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 356676553 356678999999999999999999999999999999999987766665444 33333 367899
Q ss_pred eeeecCCCCCCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 78 PVINKIDQPTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 78 vviNKiDl~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+|+||+|+...+ ..+..+++.+.++ .+++++||++|.|++++++.|.+.++
T Consensus 116 lv~nK~Dl~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 116 IAGNKCDLTDVREVMERDAKDYADSIH---AIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEECCccccccccCHHHHHHHHHHcC---CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 999999996432 1233444444444 37899999999999999999998875
No 50
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.45 E-value=4.9e-13 Score=124.86 Aligned_cols=122 Identities=19% Similarity=0.174 Sum_probs=89.4
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviN 81 (547)
+++|++.. ....++.+++|||||+.+|...+..++..+|++++|+|+++..+.+....| .... ..+.|+++|+|
T Consensus 46 ~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (181)
T 1fzq_A 46 PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125 (181)
T ss_dssp EETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred CcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 45665432 222368999999999999999999999999999999999987666554333 3222 24789999999
Q ss_pred cCCCCCCCHHHHHHHHHHhcCC-----CCccceeccccccccccccHHHHHhhCCC
Q 008991 82 KIDQPTADPDRVKAQLKSMFDL-----DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~~-----~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
|+|+.+.... +++.+.++. ...+++++||++|.|+++++++|.+.+..
T Consensus 126 K~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 126 KQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CcCcccCCCH---HHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 9999765432 223333221 23468999999999999999999988753
No 51
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.45 E-value=4.3e-13 Score=125.80 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=91.7
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHH-HHHHHh----cCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVAN-FYLAFE----SELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~lpiIvviN 81 (547)
++.|.+.. .+...+.++||||||+.+|...+..++..+|++++|+|+++..+.+.... +..... .++|+++|+|
T Consensus 53 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (188)
T 1zd9_A 53 PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132 (188)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred CCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEE
Confidence 45565543 34567899999999999999999999999999999999998766555433 333322 5799999999
Q ss_pred cCCCCCCC-HHHHHHHHHHhc-CCCCccceeccccccccccccHHHHHhhCCC
Q 008991 82 KIDQPTAD-PDRVKAQLKSMF-DLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 82 KiDl~~~~-~~~~~~~i~~~l-~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
|+|+.... .++..+.+.... .....+++++||++|.|+++++++|.+.+..
T Consensus 133 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 133 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99997653 333333322111 1123468999999999999999999988754
No 52
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.44 E-value=4.6e-14 Score=135.97 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=94.7
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh---cCCcEEe
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE---SELTIIP 78 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~lpiIv 78 (547)
++++|+|+.. ++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|..... .++|+++
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il 124 (221)
T 3gj0_A 45 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVL 124 (221)
T ss_dssp ETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 4677877653 5577899999999999999889999999999999999999877777665644332 2899999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 79 VINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 79 viNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+||+|+.+........++....+ .+++++||++|.|+++++++|.+.+.
T Consensus 125 v~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 125 CGNKVDIKDRKVKAKSIVFHRKKN---LQYYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp EEECTTSSSCSSCGGGCCHHHHHT---CEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred EEECCccccccccHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999976543222222333334 37899999999999999999998764
No 53
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=1.7e-13 Score=147.27 Aligned_cols=125 Identities=22% Similarity=0.300 Sum_probs=95.3
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCC----------ccchHHHHH-HHHhhcCEEEEEEECCCCCchhhHHHHHHHH
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPG----------HVDFSYEVS-RSLAACQGALLVVDAAQGVQAQTVANFYLAF 70 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPG----------h~df~~~~~-~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 70 (547)
+++||+|++.. ..+..++|||||| ++.|..... .++..||++++|+|++++...++..++..+.
T Consensus 224 ~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~ 303 (456)
T 4dcu_A 224 SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH 303 (456)
T ss_dssp CC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHH
Confidence 57899998752 2456899999999 566766544 5889999999999999999999999999999
Q ss_pred hcCCcEEeeeecCCCCCCC---HHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhCC
Q 008991 71 ESELTIIPVINKIDQPTAD---PDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~~~---~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+.++|+++|+||+|+...+ .++..+.+.+.+.. ...+++++||++|.|++++++++.+.+.
T Consensus 304 ~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 304 EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999997543 24455556655432 2358999999999999999999987653
No 54
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.43 E-value=2.8e-13 Score=123.44 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=90.6
Q ss_pred CCCCeEE-----EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEe
Q 008991 8 NGPGTSE-----AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIP 78 (547)
Q Consensus 8 ~~pG~T~-----~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIv 78 (547)
++.|+++ ..++..+.+++|||||+.+|...+..++..+|++++|+|+++..+.+....| ..+.. .++|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 116 (170)
T 1r2q_A 37 STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116 (170)
T ss_dssp CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4556544 2355678999999999999999999999999999999999987665554444 33332 3788999
Q ss_pred eeecCCCCCCCH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 79 VINKIDQPTADP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 79 viNKiDl~~~~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+||+|+...+. .+...++....+ .+++++||++|.|+++++++|.+.++
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 117 SGNKADLANKRAVDFQEAQSYADDNS---LLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred EEECccCccccccCHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999854321 122233333343 37899999999999999999998875
No 55
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.43 E-value=1.8e-13 Score=128.07 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=95.2
Q ss_pred CCCCCeEEEeC--CCceEEEEEeCCC----------ccchHHHHHHHHhhc---CEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 7 LNGPGTSEAHN--PSSFLLNLIDTPG----------HVDFSYEVSRSLAAC---QGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~~~--~~~~~l~liDTPG----------h~df~~~~~~~l~~a---D~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
++++|+|+... ..+..+.+||||| +..|...+..++..+ |++++|+|++.+........+..+..
T Consensus 52 ~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 131 (195)
T 3pqc_A 52 SKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS 131 (195)
T ss_dssp CSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred cCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 46777776542 1234578999999 555666666666665 99999999999888888777778888
Q ss_pred cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhCC
Q 008991 72 SELTIIPVINKIDQPTAD-PDRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.++|+++|+||+|+...+ .....+++.+.+.. ...+++++||++|.|+++++++|.+.++
T Consensus 132 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 899999999999997543 34444555555432 3458999999999999999999998764
No 56
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=126.86 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=89.2
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|.. +.. .++|+++|+||+|+...+.
T Consensus 60 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~ 139 (196)
T 3tkl_A 60 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV 139 (196)
T ss_dssp ETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS
T ss_pred ECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc
Confidence 35566899999999999999999999999999999999998766666554432 322 2789999999999975432
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
....+++...++. +++++||++|.|+++++++|.+.+.
T Consensus 140 ~~~~~~~~~~~~~~---~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 140 DYTTAKEFADSLGI---PFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp CHHHHHHHHHHTTC---CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---cEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2334555555654 7899999999999999999988663
No 57
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=128.48 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=87.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|++++.+.+....|. .+.. .++|+++|+||+|+...+.
T Consensus 70 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v 149 (192)
T 2il1_A 70 LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI 149 (192)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS
T ss_pred ECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc
Confidence 3566789999999999999999999999999999999999987777655553 2322 3789999999999964321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+..+++.+.+ ...+++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~~~~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 150 TRQQGEKFAQQI--TGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp CHHHHHHHHHTS--TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc--CCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22233444332 234789999999999999999998764
No 58
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.43 E-value=1.7e-13 Score=146.52 Aligned_cols=124 Identities=22% Similarity=0.297 Sum_probs=90.8
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCc----------cchHHHH-HHHHhhcCEEEEEEECCCCCchhhHHHHHHHH
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGH----------VDFSYEV-SRSLAACQGALLVVDAAQGVQAQTVANFYLAF 70 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh----------~df~~~~-~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 70 (547)
|++||+|++.. ..+..++||||||+ +.|.... ..+++.+|++++|+|++++.+.|+..++..+.
T Consensus 204 ~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~ 283 (436)
T 2hjg_A 204 SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH 283 (436)
T ss_dssp C---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHH
Confidence 57899998752 24467899999999 4454433 35788999999999999999999998888888
Q ss_pred hcCCcEEeeeecCCCCCCCH---HHHHHHHHHhcCC-CCccceeccccccccccccHHHHHhhC
Q 008991 71 ESELTIIPVINKIDQPTADP---DRVKAQLKSMFDL-DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~~~~---~~~~~~i~~~l~~-~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+.|+++|+||+|+.+.+. ++..+++.+.+.. ...+++++||++|.|++++++.+.+.+
T Consensus 284 ~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 284 EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 89999999999999976532 3455556555532 345899999999999999999988755
No 59
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.42 E-value=3.6e-13 Score=125.29 Aligned_cols=113 Identities=20% Similarity=0.322 Sum_probs=86.8
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|.. ... .++|+++|+||+|+....
T Consensus 47 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~ 126 (189)
T 4dsu_A 47 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV 126 (189)
T ss_dssp ETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS
T ss_pred ECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc
Confidence 46677889999999999999999999999999999999998765555444432 222 379999999999997543
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+..+++...++. +++++||++|.|+++++++|.+.+.
T Consensus 127 ~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 127 DTKQAQDLARSYGI---PFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp CHHHHHHHHHHHTC---CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23445566666654 6899999999999999999998764
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.42 E-value=2e-13 Score=124.21 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=86.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.+++|||||+.+|...+...+..+|++++|+|+++..+.+....| ..... .+.|+++|+||+|+.+.+.
T Consensus 46 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 125 (167)
T 1c1y_A 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV 125 (167)
T ss_dssp SSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc
Confidence 466788999999999999999999999999999999999986555554333 22222 3899999999999965321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+..+++.+.+ ...+++++||++|.|+++++++|.+.+
T Consensus 126 ~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 126 VGKEQGQNLARQW--CNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp SCHHHHHHHHHHT--TSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc--cCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 22233444433 234789999999999999999998765
No 61
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=4.3e-13 Score=122.44 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=87.1
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHHh-----cCCcEEeeeecCCCCCCCH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAFE-----SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~-----~~lpiIvviNKiDl~~~~~ 90 (547)
++..+.+++|||||+.+|...+..++..+|++++|+|+++....+.. .++....+ .++|+++|+||+|+...+.
T Consensus 47 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~ 126 (172)
T 2erx_A 47 DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE 126 (172)
T ss_dssp TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC
T ss_pred CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc
Confidence 55668899999999999999999999999999999999976554443 33333333 3799999999999854321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
....+++...++. +++++||++|.|+++++++|.+.+..+
T Consensus 127 v~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 127 VQSSEAEALARTWKC---AFMETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp SCHHHHHHHHHHHTC---EEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred cCHHHHHHHHHHhCC---eEEEecCCCCcCHHHHHHHHHHHHhhh
Confidence 2223344444443 789999999999999999999988654
No 62
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.42 E-value=4.3e-13 Score=127.01 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=92.3
Q ss_pred CCCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEe
Q 008991 8 NGPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIP 78 (547)
Q Consensus 8 ~~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIv 78 (547)
++.|+++. .++..+.++||||||+.+|...+..+++.+|++++|+|++++.+.+....|. .+.. .+.|+++
T Consensus 39 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (203)
T 1zbd_A 39 STVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118 (203)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEE
T ss_pred CccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 34565543 3566789999999999999999999999999999999999876666554443 3333 4789999
Q ss_pred eeecCCCCCCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 79 VINKIDQPTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 79 viNKiDl~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
|+||+|+...+ ..+..+++.+.+++ +++++||++|.|+++++++|.+.+
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 119 VGNKCDMEDERVVSSERGRQLADHLGF---EFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECTTCTTSCCSCHHHHHHHHHHHTC---EEEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEECcccCcccccCHHHHHHHHHHCCC---eEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999996542 12334455555654 789999999999999999998765
No 63
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.42 E-value=4.9e-13 Score=123.10 Aligned_cols=112 Identities=22% Similarity=0.227 Sum_probs=86.9
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|++++.+.+....|.. +.. .++|+++|+||+|+...+.
T Consensus 59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 138 (179)
T 1z0f_A 59 VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV 138 (179)
T ss_dssp ETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred ECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc
Confidence 45667899999999999999999999999999999999998766666554432 222 5789999999999954221
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+..+++.+.++ .+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 139 TYEEAKQFAEENG---LLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp CHHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122334444444 3789999999999999999998765
No 64
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=127.28 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=87.3
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCC---
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPT--- 87 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~--- 87 (547)
..++..+.++||||||+.+|...+..++..+|++++|+|++++.+.+....|.. +.. .++|+++|+||+|+..
T Consensus 71 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~ 150 (199)
T 2p5s_A 71 IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAA 150 (199)
T ss_dssp EETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHH
T ss_pred EECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc
Confidence 346677899999999999999999999999999999999998877766555533 222 3789999999999852
Q ss_pred ---CC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 88 ---AD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 88 ---~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+ ..+..+++...++. +++++||++|.|+++++++|.+.+.
T Consensus 151 ~~~~~~v~~~~~~~~~~~~~~---~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 151 TEGQKCVPGHFGEKLAMTYGA---LFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HTTCCCCCHHHHHHHHHHHTC---EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHHcCC---eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 12223444444443 7899999999999999999988764
No 65
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.42 E-value=4.2e-13 Score=126.45 Aligned_cols=120 Identities=20% Similarity=0.233 Sum_probs=88.3
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviN 81 (547)
++.|.+.. ....++.+++|||||+.+|...+..+++.+|++++|+|++++.+.+....| .... ..+.|+++|+|
T Consensus 53 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (190)
T 1m2o_B 53 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132 (190)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEE
Confidence 45555442 222348999999999999988888888999999999999988766654443 3332 25799999999
Q ss_pred cCCCCCCCHHHHHHHHHHhcCC------------CCccceeccccccccccccHHHHHhhC
Q 008991 82 KIDQPTADPDRVKAQLKSMFDL------------DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~~------------~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
|+|+...... +++.+.++. ...+++++||++|.|+++++++|.+.+
T Consensus 133 K~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 133 KIDAPNAVSE---AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp CTTSTTCCCH---HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CCCCcCCCCH---HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 9999763222 233333332 235789999999999999999998753
No 66
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=4e-13 Score=124.14 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=81.6
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.+++|||||+.+|...+..++..+|++++|+|++++.+.+....| ..+.. .++|+++|+||+|+...+
T Consensus 54 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 133 (180)
T 2g6b_A 54 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV 133 (180)
T ss_dssp EETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc
Confidence 3466678999999999999999999999999999999999987666654444 33333 578999999999997542
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+..+++.+.+++ +++++||++|.|+++++++|.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 134 VKREDGEKLAKEYGL---PFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp SCHHHHHHHHHHHTC---CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12233445555554 6899999999999999999988764
No 67
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=1.9e-13 Score=128.53 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=88.4
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHhc--CCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFES--ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+... .| ..+... ++|+++|+||+|+.....
T Consensus 60 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (194)
T 2atx_A 60 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 139 (194)
T ss_dssp ESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH
T ss_pred EECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc
Confidence 44667799999999999999988888899999999999999876666543 33 444443 899999999999975311
Q ss_pred --------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 91 --------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 91 --------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+...++.+.++. .+++++||++|.|+++++++|.+.+..
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 140 TLARLNDMKEKPICVEQGQKLAKEIGA--CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHTC--SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred chhhcccccCcccCHHHHHHHHHHcCC--cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 1222334444443 368999999999999999999887643
No 68
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.41 E-value=6.7e-13 Score=126.17 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=88.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCC---
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTA--- 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~--- 88 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+...
T Consensus 73 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v 152 (201)
T 2hup_A 73 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREV 152 (201)
T ss_dssp ETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred ECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccccc
Confidence 4556689999999999999999999999999999999999876665554443 3332 46899999999999652
Q ss_pred CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 89 DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 89 ~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..++ .+++.+.+++ .+++++||++|.|+++++++|.+.+.
T Consensus 153 ~~~~-~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 153 SLAE-AQSLAEHYDI--LCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp CHHH-HHHHHHHTTC--SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHcCC--CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222 3444444443 27899999999999999999988764
No 69
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.41 E-value=4.3e-13 Score=127.34 Aligned_cols=110 Identities=21% Similarity=0.279 Sum_probs=79.0
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeeecCCCCCCC-HHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVINKIDQPTAD-PDRV 93 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviNKiDl~~~~-~~~~ 93 (547)
++.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....| .... ..++|+++|+||+|+.+.. .++.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 147 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL 147 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHH
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHH
Confidence 48999999999999988888889999999999999987666554433 3332 2479999999999997642 3332
Q ss_pred HHHHHHhcC--------------CCCccceeccccccccccccHHHHHhhC
Q 008991 94 KAQLKSMFD--------------LDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 94 ~~~i~~~l~--------------~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+.+. ... ....+++++||++|.|+++++++|.+.+
T Consensus 148 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 148 REMFG-LYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp HHHHT-CTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred HHHhC-cccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 22221 111 1235789999999999999999998765
No 70
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.41 E-value=2.3e-13 Score=145.38 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=82.7
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCcc--------chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHV--------DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~--------df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++. ...+..+++|||||+. .+...+..++..||++++|+|++++.+.....++..+...+
T Consensus 32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~ 111 (436)
T 2hjg_A 32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK 111 (436)
T ss_dssp ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCC
T ss_pred cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 5789999875 3345789999999996 57777888999999999999999999988887777777789
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+|+++|+||+|+..... ++.+.+.+...+++++||++|.|+.+|++++.+.+|.
T Consensus 112 ~pvilv~NK~D~~~~~~-----~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 112 KPVVLAVNKLDNTEMRA-----NIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp SCEEEEEECCCC----------CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred CCEEEEEECccCccchh-----hHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 99999999999864321 1112222222368999999999999999999998874
No 71
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.41 E-value=2.8e-13 Score=124.82 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=86.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh-------cCCcEEeeeecCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE-------SELTIIPVINKIDQPT 87 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~-------~~lpiIvviNKiDl~~ 87 (547)
.++..+.+.+|||||+.+|...+..++..+|++++|+|+++..+.+....|... .. .++|+++|+||+|+..
T Consensus 51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp ETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred ECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 356668999999999999999999999999999999999987766665544322 21 5789999999999963
Q ss_pred CCH-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 88 ADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 88 ~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
... .+..+++... ....+++++||++|.|++++++.|.+.+.
T Consensus 131 ~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 131 RQVSTEEAQAWCRD--NGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CSSCHHHHHHHHHH--TTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHh--cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 321 2222333331 22347899999999999999999988653
No 72
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.8e-13 Score=127.28 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=89.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+....|.. +.. .++|+++|+||+|+.+.+
T Consensus 67 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 146 (191)
T 3dz8_A 67 RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVV 146 (191)
T ss_dssp ETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred ECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc
Confidence 36678999999999999999999999999999999999998766665544433 333 478999999999986432
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....+++...+++ +++++||++|.|++++++.|.+.+
T Consensus 147 ~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 147 PTEKGQLLAEQLGF---DFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CHHHHHHHHHHHTC---EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---eEEEEECCCCCCHHHHHHHHHHHH
Confidence 22334455555654 789999999999999999998765
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.41 E-value=6.6e-13 Score=123.80 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=86.4
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh----cCCcEEeeeecCCCCCCC--HHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE----SELTIIPVINKIDQPTAD--PDR 92 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~lpiIvviNKiDl~~~~--~~~ 92 (547)
.+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|.. ... .++|+++|+||+|+...+ ..+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 6899999999999999999999999999999999998776666544433 322 578999999999996421 123
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+++.+.+++ +++++||++|.|+++++++|.+.+.
T Consensus 149 ~~~~~~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 149 EARELAEKYGI---PYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHHHHHHTC---CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455555554 7899999999999999999987653
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.41 E-value=8.6e-13 Score=119.37 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=87.2
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.++..+.+++|||||+.+|...+..++..+|++++|+|+++..+.+....| ..+.. .++|+++|+||+|+....
T Consensus 46 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~ 125 (166)
T 2ce2_X 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV 125 (166)
T ss_dssp ETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS
T ss_pred ECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhccc
Confidence 456678899999999999999999999999999999999876555544333 22222 279999999999986532
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....+++.+.+++ +++++||++|.|+++++++|.+.+
T Consensus 126 ~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 126 ESRQAQDLARSYGI---PYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CHHHHHHHHHHHTC---CEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---eEEEecCCCCCCHHHHHHHHHHHH
Confidence 23344555555654 789999999999999999998765
No 75
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.41 E-value=3.2e-13 Score=123.22 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=88.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC-H
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD-P 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~-~ 90 (547)
.++..+.+.+|||||+.+|...+..++..+|++++|+|+++..+.+....|. .... .+.|+++|+||+|+.... .
T Consensus 47 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 126 (170)
T 1g16_A 47 INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT 126 (170)
T ss_dssp SSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSC
T ss_pred ECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccC
Confidence 4566789999999999999988899999999999999999876655544443 3332 378999999999995432 1
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+..+++.+.+++ +++++||++|.|++++++.|.+.+.
T Consensus 127 ~~~~~~~~~~~~~---~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 127 ADQGEALAKELGI---PFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHTC---CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2334455555554 6899999999999999999988764
No 76
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.41 E-value=5.7e-13 Score=120.98 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=82.5
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.++..+.+++|||||+.+|...+..++..+|++++|+|+++..+.+....| ..... .++|+++|+||+|+.+.+
T Consensus 47 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 126 (168)
T 1u8z_A 47 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126 (168)
T ss_dssp ETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC
T ss_pred ECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc
Confidence 466678999999999999999999999999999999999986655554433 22222 379999999999986432
Q ss_pred --HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.++ ..++.+..+. +++++||++|.|+++++++|.+.+
T Consensus 127 ~~~~~-~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 127 VSVEE-AKNRADQWNV---NYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp SCHHH-HHHHHHHHTC---EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHH-HHHHHHHcCC---eEEEeCCCCCCCHHHHHHHHHHHH
Confidence 222 3333334443 789999999999999999998764
No 77
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.41 E-value=2.2e-13 Score=126.50 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=74.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.++||||||+.+|...+...++.+|++++|+|+++..+.+....| ..+.. .++|+++|+||+|+.+.+.
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v 131 (183)
T 2fu5_C 52 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQV 131 (183)
T ss_dssp ETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCS
T ss_pred ECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcC
Confidence 456678999999999999988888889999999999999987665554444 33333 3789999999999975321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+..+++.+.+++ +++++||++|.|+++++++|.+.+.
T Consensus 132 ~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 132 SKERGEKLALDYGI---KFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CHHHHHHHHHHHTC---EEEECCC---CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233445555554 7899999999999999999988764
No 78
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.40 E-value=3.4e-13 Score=124.37 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=86.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh-----cCCc-EEeeeecCCCCCCC--
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE-----SELT-IIPVINKIDQPTAD-- 89 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~-----~~lp-iIvviNKiDl~~~~-- 89 (547)
..+.+++|||||+.+|...+..++..+|++++|+|+++..+.+....|.. ... .+.| +++|+||+|+.+.+
T Consensus 54 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 133 (178)
T 2hxs_A 54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI 133 (178)
T ss_dssp EEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS
T ss_pred CEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc
Confidence 46899999999999999999999999999999999998766666554433 222 2566 78999999996532
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
..+..+++.+.+++ +++++||++|.|+++++++|.+.++..
T Consensus 134 ~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 134 KPEKHLRFCQENGF---SSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp CHHHHHHHHHHHTC---EEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC---cEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 12233445555554 789999999999999999999887543
No 79
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.40 E-value=4.9e-13 Score=121.33 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=85.9
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.+++|||||+.+|...+...+..+|++++|+|+++..+.+....| .... ..+.|+++|+||+|+...+
T Consensus 45 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1kao_A 45 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124 (167)
T ss_dssp EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc
Confidence 3456678899999999999999999999999999999999986555543333 2222 2479999999999985422
Q ss_pred --HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....+++.+.+++ +++++||++|.|+++++++|.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 125 EVSSSEGRALAEEWGC---PFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp CSCHHHHHHHHHHHTS---CEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCC---CEEEecCCCCcCHHHHHHHHHHHH
Confidence 12223444444554 789999999999999999998754
No 80
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=5.8e-13 Score=124.65 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=92.1
Q ss_pred CCCCeEE-----EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh----cCCcEE
Q 008991 8 NGPGTSE-----AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE----SELTII 77 (547)
Q Consensus 8 ~~pG~T~-----~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~lpiI 77 (547)
++.|+++ ..++..+.+.||||||+.+|...+..+++.+|++++|+|+++..+.+....|.. ... .++|++
T Consensus 46 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 125 (195)
T 1x3s_A 46 ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125 (195)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE
T ss_pred CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 3455544 345677899999999999999999999999999999999998766666555533 322 368999
Q ss_pred eeeecCCCCCCCH-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 78 PVINKIDQPTADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 78 vviNKiDl~~~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+|+||+|+..... .+...++....+ .+++++||++|.|+++++++|.+.++.
T Consensus 126 lv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 126 LVGNKIDKENREVDRNEGLKFARKHS---MLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEECTTSSSCCSCHHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEECCcCcccccCHHHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999965332 222333444344 378999999999999999999987754
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.40 E-value=4.4e-13 Score=124.85 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=87.4
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHH-HHHHHh----cCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVAN-FYLAFE----SELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~lpiIvviN 81 (547)
+++|++.. ...+++.+++|||||+.+|...+..++..+|++++|+|+++..+.+.... +..... .++|+++|+|
T Consensus 51 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 130 (181)
T 2h17_A 51 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 130 (181)
T ss_dssp CCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEE
Confidence 45554322 22245899999999999999888899999999999999998866665433 333332 5799999999
Q ss_pred cCCCCCCC-HHHHHHHHHHh-cCCCCccceeccccccccccccHHHHHhh
Q 008991 82 KIDQPTAD-PDRVKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 82 KiDl~~~~-~~~~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
|+|+.... .+++.+.+... ......+++++||++|.|+++++++|.+.
T Consensus 131 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 131 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 99997643 33332222111 11123378999999999999999999764
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.40 E-value=7e-13 Score=121.28 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=89.9
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviN 81 (547)
++.|++.. .....+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....| ..... .+.|+++|+|
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 37 PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEE
Confidence 34454432 233478999999999999998888899999999999999987666554333 33322 4899999999
Q ss_pred cCCCCCCC-HHHHHHHHHHh-cCCCCccceeccccccccccccHHHHHhhCC
Q 008991 82 KIDQPTAD-PDRVKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 82 KiDl~~~~-~~~~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+|+.+.. .+++.+.+... ..-...+++++||++|.|+++++++|.+.++
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 117 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp CTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 99997653 33333333211 1112347899999999999999999988764
No 83
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.40 E-value=6e-13 Score=122.22 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=82.8
Q ss_pred CCCCeEE-----EeCCCceEEEEEeCCCccc--hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHhc----CCc
Q 008991 8 NGPGTSE-----AHNPSSFLLNLIDTPGHVD--FSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFES----ELT 75 (547)
Q Consensus 8 ~~pG~T~-----~~~~~~~~l~liDTPGh~d--f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~~----~lp 75 (547)
+++|+++ ..++..+.+++|||||+.+ +.......++.+|++++|+|+++..+.+....| ..+... ++|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p 113 (175)
T 2nzj_A 34 EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113 (175)
T ss_dssp CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC
T ss_pred CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC
Confidence 4567553 3466778999999999988 455556677889999999999987665554444 334333 799
Q ss_pred EEeeeecCCCCCCCH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 76 IIPVINKIDQPTADP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 76 iIvviNKiDl~~~~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+++|+||+|+...+. .+..+++...++ .+++++||++|.|+++++++|.+.+
T Consensus 114 iilv~NK~Dl~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 114 IILVGNKADLARCREVSVEEGRACAVVFD---CKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHHHHHHT---SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEEChhhccccccCHHHHHHHHHHcC---CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 999999999975421 122233444444 3789999999999999999998765
No 84
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.40 E-value=1.1e-12 Score=123.80 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=81.5
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.+..++.+++|||||+.+|...+..++..+|++++|+|+++..+.+....| ..... .+.|+++|+||+|+.+..
T Consensus 68 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~ 147 (192)
T 2b6h_A 68 VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP 147 (192)
T ss_dssp EEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC
Confidence 344678999999999999998899999999999999999987666554333 33322 379999999999997653
Q ss_pred HHHHHHHHHHh-cCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 PDRVKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ~~~~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+++.+++... ......+++++||++|.|+++++++|.+.+.
T Consensus 148 ~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 23332222211 1112346899999999999999999998764
No 85
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.40 E-value=7.2e-13 Score=123.06 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=88.3
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-H----HhcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-A----FESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~----~~~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.+++|||||+.+|...+..+++.+|++++|+|++++.+.+....|.. . ...++|+++|+||+|+.+.+
T Consensus 60 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 139 (183)
T ss_dssp EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred EeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc
Confidence 346677889999999999999999999999999999999998766665444422 2 23578999999999996532
Q ss_pred --HHHHHHHHHHhcCCCCccceecccc-ccccccccHHHHHhhC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAK-TGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk-~g~Gv~~Ll~~l~~~i 130 (547)
..+..+++.+.++ .+++++||+ +|.|++++++.|.+.+
T Consensus 140 ~v~~~~~~~~~~~~~---~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 140 KVTRDQGKEMATKYN---IPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSCHHHHHHHHHHHT---CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhC---CeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 2333455555565 368999999 9999999999998754
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.40 E-value=8.5e-13 Score=123.74 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=89.0
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHHh------cCCcEEee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAFE------SELTIIPV 79 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~------~~lpiIvv 79 (547)
++.|++.. ....++.++||||||+.+|...+..++..+|++++|+|+++..+.+... ++..... .++|+++|
T Consensus 53 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 53 PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp CCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred CccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 34554432 2334589999999999999998889999999999999999865554433 3333332 47899999
Q ss_pred eecCCCCCC-CHHHHHHHHH-HhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 80 INKIDQPTA-DPDRVKAQLK-SMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 80 iNKiDl~~~-~~~~~~~~i~-~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+||+|+.+. +.++..+.+. ..+.....+++++||++|.|+++++++|.+.+.
T Consensus 133 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 133 ANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 999999764 3333333332 112222457899999999999999999998764
No 87
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.39 E-value=2.8e-13 Score=126.95 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEe
Q 008991 8 NGPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIP 78 (547)
Q Consensus 8 ~~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIv 78 (547)
++.|+++. .++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....| ..+.. .+.|+++
T Consensus 53 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 132 (189)
T 2gf9_A 53 STVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132 (189)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 35565542 356678999999999999988888999999999999999987666655444 33333 3789999
Q ss_pred eeecCCCCCCC--HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 79 VINKIDQPTAD--PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 79 viNKiDl~~~~--~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+||+|+...+ ..+..+++.+.+++ +++++||++|.|+++++++|.+.++
T Consensus 133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 133 VGNKCDLEDERVVPAEDGRRLADDLGF---EFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTC---EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECcccccccCCCHHHHHHHHHHcCC---eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999996432 12334555555654 7899999999999999999987653
No 88
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.39 E-value=1.6e-13 Score=126.73 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh-------cCCcEEeeeecCCCCCCC
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE-------SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~-------~~lpiIvviNKiDl~~~~ 89 (547)
+..+.+++|||||+.+|...+...++.+|++++|+|+++..+.+....|.. ... .++|+++|+||+|+....
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 134 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 134 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc
Confidence 456899999999999999988889999999999999998776666555432 221 578999999999995321
Q ss_pred ---HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 ---PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ---~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....+++.+. ....+++++||++|.|+++++++|.+.+
T Consensus 135 ~~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 135 KIVSEKSAQELAKS--LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp CCSCHHHHHHHHHH--TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHh--cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 12223344332 2234789999999999999999998754
No 89
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.3e-12 Score=122.92 Aligned_cols=114 Identities=17% Similarity=0.224 Sum_probs=88.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHHh-----cCCcEEeeeecCCCCCCCH
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAFE-----SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~-----~~lpiIvviNKiDl~~~~~ 90 (547)
++..+.++||||||+.+|...+..++..+|++++|+|+++....+... ++..+.. .++|+++|+||+|+.....
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~ 131 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV 131 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS
T ss_pred CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc
Confidence 566789999999999999999999999999999999998865555433 3332222 3789999999999975322
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.....++...++. +++++||++|.|+++++++|.+.+...
T Consensus 132 ~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 132 DTREAQAVAQEWKC---AFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp CHHHHHHHHHHHTC---EEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHhCC---eEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 2223444444553 789999999999999999999988654
No 90
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.39 E-value=1.3e-13 Score=140.27 Aligned_cols=123 Identities=19% Similarity=0.252 Sum_probs=94.3
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCcc-c--------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHV-D--------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~-d--------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
|+.||+|++. ...++.+++|||||+. . |...+..++..+|++++|+|+++ .+.++...+..+...
T Consensus 37 s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~ 115 (301)
T 1ega_A 37 SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG 115 (301)
T ss_dssp CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS
T ss_pred CCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc
Confidence 5678888642 3356889999999998 3 22333456778999999999988 888888888777777
Q ss_pred CCcEEeeeecCCCCCC--CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 73 ELTIIPVINKIDQPTA--DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~--~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+.|+++++||+|+... ...+..+++.+.+++ .+++++||++|.|++++++.+.+.+|.
T Consensus 116 ~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~--~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 116 KAPVILAVNKVDNVQEKADLLPHLQFLASQMNF--LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC--SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CCCEEEEEECcccCccHHHHHHHHHHHHHhcCc--CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 9999999999999762 222333444444443 368999999999999999999998874
No 91
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.39 E-value=8.5e-14 Score=128.92 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHH-HHHh--cCCcEEeeeecCCCCCCCH--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFY-LAFE--SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~-~~~~--~~lpiIvviNKiDl~~~~~-- 90 (547)
++..+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+... .|. .+.. .++|+++|+||+|+.+.+.
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 131 (182)
T 3bwd_D 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFF 131 (182)
T ss_dssp ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHH
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccc
Confidence 456678889999999999988888999999999999999876666554 343 3333 2799999999999865422
Q ss_pred ----------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 91 ----------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 91 ----------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
....+++.+.++. .+++++||++|.|++++++.|.+.+..|
T Consensus 132 ~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 132 IDHPGAVPITTVQGEELKKLIGA--PAYIECSSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp HHC--CCCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred cccccCCCCCHHHHHHHHHHcCC--CEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 1222344444443 3789999999999999999999876544
No 92
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.39 E-value=6.6e-13 Score=122.22 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=86.5
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHH---hcCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAF---ESELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~---~~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.+.+|||||+.+|...+..++..+|++++|+|+++..+.+....|. ... ..++|+++|+||+|+...+.
T Consensus 58 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 137 (179)
T 2y8e_A 58 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 137 (179)
T ss_dssp ETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCS
T ss_pred ECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcC
Confidence 3566689999999999999999999999999999999998866555544443 222 24799999999999864321
Q ss_pred -HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 91 -DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 91 -~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.....++....+ .+++++||++|.|+++++++|.+.++.
T Consensus 138 ~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 138 STEEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp CHHHHHHHHHHHT---CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 122233333344 378999999999999999999988753
No 93
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.39 E-value=1.9e-13 Score=126.82 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=89.1
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHhc--CCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFES--ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.+++|||||+.+|...+..++..+|++++|+|++++.+.+... .| ..+... ++|+++|+||+|+.....
T Consensus 47 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 126 (186)
T 1mh1_A 47 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126 (186)
T ss_dssp EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH
T ss_pred EECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch
Confidence 45677889999999999999888888899999999999999876666653 33 333333 899999999999865321
Q ss_pred --------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 91 --------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 91 --------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
.....++.+.++. .+++++||++|.|++++++.|.+.+..+.
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 127 TIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCC--cEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 1112223333332 37899999999999999999999886653
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.39 E-value=9.7e-13 Score=121.98 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=85.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++....+....| ..... .++|+++|+||+|+...+.
T Consensus 61 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 140 (187)
T 2a9k_A 61 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 140 (187)
T ss_dssp ETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC
T ss_pred ECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc
Confidence 456678999999999999999999999999999999999986555554433 22222 3799999999999864321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....++.+.++ .+++++||++|.|+++++++|.+.+
T Consensus 141 ~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 141 VSVEEAKNRAEQWN---VNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp SCHHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcC---CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 122233334444 3789999999999999999998765
No 95
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=7.1e-13 Score=141.77 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=86.5
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccc---------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVD---------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~d---------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
+++||+|++.. ..+..+++|||||+.+ +...+..+++.||++++|+|++++.+.........+...
T Consensus 30 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~ 109 (439)
T 1mky_A 30 EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS 109 (439)
T ss_dssp --------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH
T ss_pred cCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 57899998753 2456789999999764 345667789999999999999999888777776767777
Q ss_pred CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 73 ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
++|+++|+||+|+..........++. .+++ .+++++||++|.|+.+|++++.+.+|.
T Consensus 110 ~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~--~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 110 TVDTILVANKAENLREFEREVKPELY-SLGF--GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TCCEEEEEESCCSHHHHHHHTHHHHG-GGSS--CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccccHHHHHHHHH-hcCC--CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 99999999999984310111102222 2333 367999999999999999999988763
No 96
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.38 E-value=4.4e-13 Score=125.96 Aligned_cols=112 Identities=22% Similarity=0.223 Sum_probs=87.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+...+
T Consensus 65 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v 144 (191)
T 2a5j_A 65 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDV 144 (191)
T ss_dssp ETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred ECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcccc
Confidence 4566789999999999999988899999999999999999876666654443 3333 378999999999996421
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+..+++....++ +++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 145 KREEGEAFAREHGL---IFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp CHHHHHHHHHHHTC---EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12223444444554 789999999999999999998765
No 97
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.38 E-value=9.9e-13 Score=120.18 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=79.7
Q ss_pred eCCCceEEEEEeCCCccchHH-HHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeeeecCCCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSY-EVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVINKIDQPTAD 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~-~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvviNKiDl~~~~ 89 (547)
.++..+.+.+|||||+.++.. ....+++.+|++++|+|+++..+.+....| ..... .++|+++|+||+|+.+.+
T Consensus 46 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 46 VDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR 125 (169)
T ss_dssp ETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGC
T ss_pred ECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcc
Confidence 467788999999999999876 556678899999999999986665554444 33322 279999999999986322
Q ss_pred --HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.....+++.+.++. +++++||++|.|++++++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 126 EVSLEEGRHLAGTLSC---KHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp CSCHHHHHHHHHHTTC---EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCC---cEEEecCccCCCHHHHHHHHHHHH
Confidence 12334445555554 789999999999999999998764
No 98
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.38 E-value=1.7e-13 Score=130.89 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=88.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHhc--CCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFES--ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+... .| ..+... ++|+++|+||+|+...+.
T Consensus 51 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 51 AVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp ECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence 34667789999999999999988888999999999999999876666543 33 333333 899999999999865421
Q ss_pred ----------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 91 ----------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 91 ----------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
....+++...++. .+++++||++|.|+++++++|.+.+..+.
T Consensus 131 ~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 131 YLADHTNVITSTQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred ccccccCCCCHHHHHHHHHHcCC--ceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 2223444444543 37899999999999999999998876544
No 99
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.38 E-value=2.4e-13 Score=129.55 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=86.0
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHhc--CCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFES--ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.++||||||+.+|...+..+++.+|++++|+|++++.+.+... .| ..+... ++|+++|+||+|+...+.
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 72 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp ECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 44677888999999999999988888999999999999999877776653 33 333333 899999999999865422
Q ss_pred H--------------HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 D--------------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~--------------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. .....+.+.++ ..+++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 152 TIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhhhhhccccccccHHHHHHHHHhcC--CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 11122233333 24689999999999999999998754
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.38 E-value=7.6e-13 Score=123.35 Aligned_cols=124 Identities=20% Similarity=0.180 Sum_probs=89.6
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHHh----cCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAFE----SELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~lpiIvviN 81 (547)
++.|++.. ...+++.+++|||||+.+|...+..++..+|++++|+|+++..+.+... ++..... .+.|+++|+|
T Consensus 48 ~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEe
Confidence 45564442 2334689999999999999988888999999999999999876665543 3333332 4799999999
Q ss_pred cCCCCCCC-HHHHHHHHHHh-cCCCCccceeccccccccccccHHHHHhhCC
Q 008991 82 KIDQPTAD-PDRVKAQLKSM-FDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 82 KiDl~~~~-~~~~~~~i~~~-l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
|+|+.+.. .++..+.+... ......+++++||++|.|+++++++|.+.++
T Consensus 128 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 128 KQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp CTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99997653 23322222111 1122347899999999999999999998764
No 101
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.37 E-value=3.3e-13 Score=123.37 Aligned_cols=114 Identities=23% Similarity=0.216 Sum_probs=80.8
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHH---hcCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAF---ESELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~---~~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.+.+|||||+.+|...+...++.+|++++|+|+++..+.+....|. .+. ..++|+++|+||+|+...+
T Consensus 49 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 128 (170)
T 1z08_A 49 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH 128 (170)
T ss_dssp ESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC
T ss_pred EECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccc
Confidence 34667789999999999999988888899999999999999876666554442 222 2578999999999996432
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+..+++.+.++ .+++++||++|.|+++++++|.+.++
T Consensus 129 ~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 129 VSIQEAESYAESVG---AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp SCHHHHHHHHHHTT---CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 1222344444444 37899999999999999999987653
No 102
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.37 E-value=5e-13 Score=121.70 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=86.6
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh--cCCcEEeeeecCCCCCCC--H
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE--SELTIIPVINKIDQPTAD--P 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~lpiIvviNKiDl~~~~--~ 90 (547)
.++..+.+.+|||||+.+|...+...+..+|++++|+|+++..+.+....|.. +.. .+.|+++|+||+|+...+ .
T Consensus 49 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~ 128 (168)
T 1z2a_A 49 VNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK 128 (168)
T ss_dssp ETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC
T ss_pred ECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC
Confidence 45667899999999999998888999999999999999998765555444432 222 489999999999986432 1
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+..+++.+.++. +++++||++|.|+++++++|.+.+
T Consensus 129 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 129 NEEAEGLAKRLKL---RFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HHHHHHHHHHHTC---EEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---eEEEEecCCCCCHHHHHHHHHHHH
Confidence 2233445555554 789999999999999999998754
No 103
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.37 E-value=8.3e-13 Score=125.70 Aligned_cols=113 Identities=20% Similarity=0.210 Sum_probs=87.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....| ..+.. .++|+++|+||+|+.....
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 143 (213)
T 3cph_A 64 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT 143 (213)
T ss_dssp ETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSC
T ss_pred ECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccC
Confidence 455668999999999999998889999999999999999987665554444 33332 2789999999999953321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
....+++...+++ +++++||++|.|+++++++|.+.++
T Consensus 144 ~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 144 ADQGEALAKELGI---PFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHHTC---CEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2333455555554 6899999999999999999987664
No 104
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.37 E-value=6.5e-13 Score=123.52 Aligned_cols=112 Identities=23% Similarity=0.206 Sum_probs=86.7
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HH---hcCCcEEeeeecCCCCCC---
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AF---ESELTIIPVINKIDQPTA--- 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~---~~~lpiIvviNKiDl~~~--- 88 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|.. .. ..++|+++|+||+|+...
T Consensus 54 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 133 (186)
T 2bme_A 54 VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV 133 (186)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS
T ss_pred ECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc
Confidence 35566899999999999999999999999999999999998776666555532 22 357899999999999532
Q ss_pred CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 89 DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 89 ~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..++ ..++....+ .+++++||++|.|+++++++|.+.+.
T Consensus 134 ~~~~-~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 134 TFLE-ASRFAQENE---LMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp CHHH-HHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 2222 233333344 37899999999999999999987664
No 105
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.37 E-value=4.4e-13 Score=126.15 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=88.9
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHH-HHh--cCCcEEeeeecCCCCCC---
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYL-AFE--SELTIIPVINKIDQPTA--- 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~-~~~--~~lpiIvviNKiDl~~~--- 88 (547)
.++..+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+.. ..|.. ... .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 145 (194)
T 3reg_A 66 YKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD 145 (194)
T ss_dssp ETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTT
T ss_pred ECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCC
Confidence 466778899999999999999999999999999999999987666653 33433 332 26899999999999642
Q ss_pred -CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 89 -DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 89 -~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
...+..+++.+.++.. +++++||++|.|++++++.|.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 146 DVTKQEGDDLCQKLGCV--AYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp CCCHHHHHHHHHHHTCS--CEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHhcCCC--EEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 1233344555556542 38999999999999999999987643
No 106
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=122.73 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=86.6
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|. .... .++|+++|+||+|+...+
T Consensus 57 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 136 (206)
T 2bov_A 57 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 136 (206)
T ss_dssp ETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC
T ss_pred ECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccc
Confidence 3566789999999999999999999999999999999999876555544442 2222 379999999999996532
Q ss_pred --HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.++ ..++.+.++. +++++||++|.|+++++++|.+.+.
T Consensus 137 ~~~~~-~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 137 VSVEE-AKNRAEQWNV---NYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp SCHHH-HHHHHHHHTC---EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccHHH-HHHHHHHhCC---eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222 3333444443 7899999999999999999988764
No 107
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.37 E-value=8e-13 Score=126.60 Aligned_cols=109 Identities=25% Similarity=0.332 Sum_probs=86.2
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh-----cCCcEEeeeecCCCCCCC--HHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE-----SELTIIPVINKIDQPTAD--PDR 92 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~lpiIvviNKiDl~~~~--~~~ 92 (547)
.+.++||||||+.+|...+..++..+|++|+|+|+++..+.+....|..... .++|+++|+||+|+...+ ...
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 6889999999999999999999999999999999998766666555543222 478999999999996532 123
Q ss_pred HHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+++.+.+++ +++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 163 QARELADKYGI---PYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHHHTTC---CEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC---cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455555554 6899999999999999999987653
No 108
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.36 E-value=1.4e-12 Score=121.96 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=77.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|.. +.. .++|+++|+||+|+....
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~ 143 (190)
T 3con_A 64 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV 143 (190)
T ss_dssp ETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccC
Confidence 35667889999999999999999999999999999999998766555444432 222 379999999999986532
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..+..+++.+.+++ +++++||++|.|+++++++|.+.+
T Consensus 144 ~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 144 DTKQAHELAKSYGI---PFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CHHHHHHHHHHHTC---CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22334455555554 689999999999999999998765
No 109
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=9.1e-13 Score=125.70 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=87.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+....|.. +.. .++|+++|+||+|+...+
T Consensus 69 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~ 148 (201)
T 2ew1_A 69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE 148 (201)
T ss_dssp EETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 346677899999999999999999999999999999999998766665554432 222 378999999999996421
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+..+++....+. +++++||++|.|++++++.|.+.+.
T Consensus 149 v~~~~~~~~~~~~~~---~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 149 VSQQRAEEFSEAQDM---YYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp SCHHHHHHHHHHHTC---CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC---EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12223444444443 7899999999999999999987664
No 110
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.36 E-value=1.1e-12 Score=124.09 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=78.0
Q ss_pred eCCC--ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh------cCCcEEeeeecCCCC
Q 008991 16 HNPS--SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE------SELTIIPVINKIDQP 86 (547)
Q Consensus 16 ~~~~--~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~------~~lpiIvviNKiDl~ 86 (547)
+++. .+.++||||||+.+|...+..++..+|++++|+|++++.+.+....|. .+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 66 IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp CTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred ECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 3455 789999999999999999989999999999999999877666655443 3332 488999999999997
Q ss_pred C-CC--HHHHHHHHHHhcCCCCccceeccccc-cccccccHHHHHhhCC
Q 008991 87 T-AD--PDRVKAQLKSMFDLDPSEALLTSAKT-GQGLEHVLPAVIERIP 131 (547)
Q Consensus 87 ~-~~--~~~~~~~i~~~l~~~~~~vi~~SAk~-g~Gv~~Ll~~l~~~ip 131 (547)
. .+ ..+..+++.+.++ .+++++||++ |.|+++++++|.+.+.
T Consensus 146 ~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 146 PQRHQVRLDMAQDWATTNT---LDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ----CCCHHHHHHHHHHTT---CEEEECCC-------CHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHcC---CEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 5 21 1222344444455 3789999999 9999999999988653
No 111
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.36 E-value=5.9e-13 Score=122.77 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=86.0
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HH----HhcCCcEEeeeecCCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LA----FESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~----~~~~lpiIvviNKiDl~~~~ 89 (547)
..++..+.++||||||+.+|...+...+..+|++++|+|+++..+......|. .. ...++|+++|+||+|+...+
T Consensus 51 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 130 (181)
T 2fn4_A 51 SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR 130 (181)
T ss_dssp EETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 34566789999999999999988999999999999999999865554443332 22 23478999999999986432
Q ss_pred -H-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 -P-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 -~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
. ....+++....+ .+++++||++|.|+++++++|.+.+.
T Consensus 131 ~v~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 131 QVPRSEASAFGASHH---VAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp CSCHHHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 222344444443 37899999999999999999987664
No 112
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.36 E-value=7.8e-13 Score=126.76 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=84.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HH---hcCCcEEeeeecCCCCCCCHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AF---ESELTIIPVINKIDQPTADPDRVK 94 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~---~~~lpiIvviNKiDl~~~~~~~~~ 94 (547)
..+.++||||||+.+|...+...+..+|++++|+|++++.+.+....|.. +. ..++|+++|+||+|+...+. ...
T Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~ 137 (218)
T 4djt_A 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK-ISK 137 (218)
T ss_dssp CEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCH
T ss_pred cEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCH
Confidence 34889999999999999888899999999999999999877777654432 22 23689999999999975421 111
Q ss_pred HHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 95 AQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 95 ~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
++..+.......+++++||++|.|+++++++|.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 22223333334579999999999999999999987644
No 113
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.36 E-value=5.3e-13 Score=143.89 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccchHHHHHH--------HHhhcCEEEEEEECCCCCchh----hHHHHHHH
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSYEVSR--------SLAACQGALLVVDAAQGVQAQ----TVANFYLA 69 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~~~~~--------~l~~aD~ailVvDa~~g~~~q----t~~~~~~~ 69 (547)
+++||||++.. -.++.++||||||+.++...+.. ++..||++++|+|++++.+.+ ...++..+
T Consensus 262 s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l 341 (476)
T 3gee_A 262 SHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH 341 (476)
T ss_dssp -----------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC
T ss_pred CCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc
Confidence 67899998763 34578999999999887655433 467899999999999988774 33333322
Q ss_pred HhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC-CC
Q 008991 70 FESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP-PP 133 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip-~p 133 (547)
.++|+++|+||+|+........ +++.+. ++ .+++++||++|.|+++++++|.+.++ .+
T Consensus 342 --~~~piIvV~NK~Dl~~~~~~~~-~~l~~~-~~--~~~i~vSAktg~GI~eL~~~i~~~~~~~~ 400 (476)
T 3gee_A 342 --PAAKFLTVANKLDRAANADALI-RAIADG-TG--TEVIGISALNGDGIDTLKQHMGDLVKNLD 400 (476)
T ss_dssp --TTSEEEEEEECTTSCTTTHHHH-HHHHHH-HT--SCEEECBTTTTBSHHHHHHHHTHHHHSSC
T ss_pred --CCCCEEEEEECcCCCCccchhH-HHHHhc-CC--CceEEEEECCCCCHHHHHHHHHHHHhhcc
Confidence 2799999999999987654332 344443 12 47899999999999999999999886 44
No 114
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=123.90 Aligned_cols=113 Identities=20% Similarity=0.239 Sum_probs=87.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh--cCCcEEeeeecCCCCCCCH--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE--SELTIIPVINKIDQPTADP-- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~--~~lpiIvviNKiDl~~~~~-- 90 (547)
.++..+.+++|||||+.+|...+..++..+|++++|+|++++.+.+....|.. ... .++|+++|+||+|+...+.
T Consensus 53 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 132 (181)
T 3tw8_B 53 INGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVE 132 (181)
T ss_dssp ETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSC
T ss_pred ECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccC
Confidence 35566899999999999999888889999999999999998766666554433 222 3589999999999865321
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.....++...++. +++++||++|.|+++++++|.+.+.
T Consensus 133 ~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 133 TEDAYKFAGQMGI---QLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHTC---CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2223444444554 7899999999999999999988664
No 115
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.36 E-value=2.7e-13 Score=128.48 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=86.1
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh-------cCCcEEeeeecCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE-------SELTIIPVINKIDQPT 87 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~-------~~lpiIvviNKiDl~~ 87 (547)
.++..+.++||||||+.+|...+..+++.+|++|+|+|++++.+.+....|... .. .++|+++|+||+|+..
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp SSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred ECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 355678999999999999988888889999999999999987766665544322 11 4789999999999974
Q ss_pred CCH-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 88 ADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 88 ~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
... .+..+++... ....+++++||++|.|+++++++|.+.+.
T Consensus 132 ~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 132 RQVATKRAQAWCYS--KNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp CCSCHHHHHHHHHH--TTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHh--cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 322 2222333321 22347899999999999999999998764
No 116
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.35 E-value=6.6e-13 Score=123.10 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=86.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-H----HhcCCcEEeeeecCCCCCCCH
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-A----FESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~----~~~~lpiIvviNKiDl~~~~~ 90 (547)
.++..+.+++|||||+.+|...+...++.+|++++|+|+++..+.+....|.. . ...++|+++|+||+|+...+.
T Consensus 49 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 128 (181)
T 3t5g_A 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV 128 (181)
T ss_dssp ETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCC
T ss_pred ECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcce
Confidence 46667899999999999998778888899999999999998666555444422 2 234789999999999964321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
....+++.+.++. +++++||++|.|++++++.|.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 129 ISYEEGKALAESWNA---AFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp SCHHHHHHHHHHTTC---EEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred ecHHHHHHHHHHhCC---cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2334455555554 78999999999999999999987654
No 117
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.35 E-value=1.7e-12 Score=121.49 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=84.3
Q ss_pred eCCCceEEEEEeCCCccchH-HHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHH----hcCCcEEeeeecCCCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFS-YEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAF----ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~-~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~----~~~lpiIvviNKiDl~~~~ 89 (547)
.++..+.++||||||+.+|. ..+..+++.+|++++|+|+++..+.+....|. .+. ..++|+++|+||+|+...+
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 1z06_A 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI 143 (189)
T ss_dssp ETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC
T ss_pred ECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 45667899999999999998 77888899999999999999876665544442 222 2478999999999996432
Q ss_pred --HHHHHHHHHHhcCCCCccceecccccc---ccccccHHHHHhhCC
Q 008991 90 --PDRVKAQLKSMFDLDPSEALLTSAKTG---QGLEHVLPAVIERIP 131 (547)
Q Consensus 90 --~~~~~~~i~~~l~~~~~~vi~~SAk~g---~Gv~~Ll~~l~~~ip 131 (547)
..+..+++...+++ +++++||++| .|++++++.|.+.++
T Consensus 144 ~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 144 QVPTDLAQKFADTHSM---PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSCHHHHHHHHHHTTC---CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred eeCHHHHHHHHHHcCC---EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 12334455555554 7899999999 999999999987764
No 118
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.35 E-value=7.7e-13 Score=124.09 Aligned_cols=106 Identities=24% Similarity=0.270 Sum_probs=82.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HH-HhcCCcEEeeeecCCCCCC--CHHHHHHH
Q 008991 21 FLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LA-FESELTIIPVINKIDQPTA--DPDRVKAQ 96 (547)
Q Consensus 21 ~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~-~~~~lpiIvviNKiDl~~~--~~~~~~~~ 96 (547)
+.++||||||+.+|...+..++..+|++++|+|++++.+.+....|. .. ...+.|+++|+||+|+... ..++. ++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~-~~ 171 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEV-QK 171 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHH-HH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHH-HH
Confidence 89999999999999999999999999999999999887666655442 23 3356999999999994322 22332 33
Q ss_pred HHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 97 LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 97 i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+.+..+ .+++++||++|.|+++++++|.+.+
T Consensus 172 ~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 172 YAQDNN---LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHTT---CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcC---CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 333334 3789999999999999999998754
No 119
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.35 E-value=9.9e-13 Score=121.94 Aligned_cols=120 Identities=21% Similarity=0.224 Sum_probs=83.8
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeee
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVIN 81 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviN 81 (547)
++.|++.. ....++.+++|||||+.+|...+..++..+|++++|+|+++..+.+....| .... ..+.|+++|+|
T Consensus 48 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (183)
T 1moz_A 48 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127 (183)
T ss_dssp SSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEE
T ss_pred CcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEE
Confidence 45554332 222458999999999999988888889999999999999988666654433 3332 25789999999
Q ss_pred cCCCCCCCHHHHHHHHHHhcCC-----CCccceeccccccccccccHHHHHhhC
Q 008991 82 KIDQPTADPDRVKAQLKSMFDL-----DPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 82 KiDl~~~~~~~~~~~i~~~l~~-----~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
|+|+.+.... +++.+.++. ...+++++||++|.|+++++++|.+.+
T Consensus 128 K~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 128 KQDQPGALSA---SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp CTTSTTCCCH---HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCCCCCCCCH---HHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 9999764321 223333322 123689999999999999999998765
No 120
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.35 E-value=9.8e-13 Score=124.93 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=88.6
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~- 89 (547)
..++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+...+
T Consensus 51 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (206)
T 2bcg_Y 51 ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV 130 (206)
T ss_dssp EETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred EECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 34666789999999999999888888999999999999999877666655443 2322 368999999999997532
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+...++....++ +++++||++|.|+++++++|.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 131 VEYDVAKEFADANKM---PFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp SCHHHHHHHHHHTTC---CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12233445444543 7899999999999999999988664
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=121.13 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=87.9
Q ss_pred EeCCCceEEEEEeCCCccchHH-HHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSY-EVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPTA 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~-~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~~ 88 (547)
.+++..+.+.+|||||+.++.. .+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 66 MVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp EETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred EECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 3467788999999999998765 5667788999999999999876665554443 2322 37999999999999653
Q ss_pred CH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 89 DP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 89 ~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
+. .+..+++.+.++ .+++++||++|.|++++++.|++.+....
T Consensus 146 ~~v~~~~~~~~a~~~~---~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 146 REVSLEEGRHLAGTLS---CKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp CCSCHHHHHHHHHHTT---CEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHhC---CEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 21 222344555454 37899999999999999999998875543
No 122
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.35 E-value=4.2e-12 Score=121.30 Aligned_cols=110 Identities=24% Similarity=0.326 Sum_probs=77.8
Q ss_pred ceEEEEEeCCCccchHH-HHHHHHhhcCEEEEEEECCCCCc-h-hhHHHHHHHH------hcCCcEEeeeecCCCCCCC-
Q 008991 20 SFLLNLIDTPGHVDFSY-EVSRSLAACQGALLVVDAAQGVQ-A-QTVANFYLAF------ESELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~-~~~~~l~~aD~ailVvDa~~g~~-~-qt~~~~~~~~------~~~lpiIvviNKiDl~~~~- 89 (547)
.+.+++||||||.+|.. .+..++..+|++++|+|+++... . .....|.... ..++|+++|+||+|+....
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence 68999999999999988 67778899999999999987211 1 1223333221 2368999999999997653
Q ss_pred HHHHHHHHHHhcC----------------------CC-------------Cccceecccccc------ccccccHHHHHh
Q 008991 90 PDRVKAQLKSMFD----------------------LD-------------PSEALLTSAKTG------QGLEHVLPAVIE 128 (547)
Q Consensus 90 ~~~~~~~i~~~l~----------------------~~-------------~~~vi~~SAk~g------~Gv~~Ll~~l~~ 128 (547)
.+...+.+.+.++ .. ..+++++||++| .||++++++|.+
T Consensus 133 ~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 133 AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 3444444443221 01 346899999999 999999999986
Q ss_pred h
Q 008991 129 R 129 (547)
Q Consensus 129 ~ 129 (547)
.
T Consensus 213 ~ 213 (214)
T 2fh5_B 213 I 213 (214)
T ss_dssp H
T ss_pred h
Confidence 5
No 123
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.34 E-value=3.6e-12 Score=119.42 Aligned_cols=111 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred EEEeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCC
Q 008991 13 SEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPT 87 (547)
Q Consensus 13 T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~ 87 (547)
+..+++..+.++||||||+.+|. +++.+|++++|+|+++..+.+....|. .... .++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 59 EIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp EEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred EEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 34557778899999999999986 778899999999999987777744453 3333 3689999999999842
Q ss_pred C----CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 88 A----DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 88 ~----~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
. -..+..+++.+.++ ..+++++||++|.|++++|++|++.+
T Consensus 134 ~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 134 ANPRVIDDSRARKLSTDLK--RCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TBCCCSCHHHHHHHHHHTT--TCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcC--CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 1 11223344444443 24789999999999999999998754
No 124
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.33 E-value=2.3e-13 Score=128.83 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=80.8
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hhc---CCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FES---ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~~---~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+....|... ... ++|+++|+||+|+...+.
T Consensus 76 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~ 155 (199)
T 3l0i_B 76 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 155 (199)
T ss_dssp EETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC
T ss_pred EECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc
Confidence 3466678999999999999988888899999999999999998776665555433 322 789999999999964321
Q ss_pred --HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 91 --DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 91 --~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
....+++...+++ +++++||++|.|+++++++|.+.+..
T Consensus 156 v~~~~~~~~~~~~~~---~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 156 VDYTTAKEFADSLGI---PFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCSCC-CHHHHTTTC---CBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHcCC---eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1112344444443 68999999999999999999887753
No 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.33 E-value=7.6e-13 Score=127.26 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=87.7
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-HHHH-HHHHhc--CCcEEeeeecCCCCCC---
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-VANF-YLAFES--ELTIIPVINKIDQPTA--- 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~-~~~~~~--~lpiIvviNKiDl~~~--- 88 (547)
.++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+. ...| ..+... ++|+++|+||+|+...
T Consensus 70 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 149 (214)
T 3q3j_B 70 TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLST 149 (214)
T ss_dssp C--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHH
T ss_pred ECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhh
Confidence 46677899999999999999888889999999999999998776665 3444 333333 7999999999999642
Q ss_pred -----------CHHHHHHHHHHhcCCCCccceecccccccc-ccccHHHHHhhCCC
Q 008991 89 -----------DPDRVKAQLKSMFDLDPSEALLTSAKTGQG-LEHVLPAVIERIPP 132 (547)
Q Consensus 89 -----------~~~~~~~~i~~~l~~~~~~vi~~SAk~g~G-v~~Ll~~l~~~ip~ 132 (547)
-.....+++...++. .+++++||++|.| |+++|+.|.+.+..
T Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 150 LMELSHQKQAPISYEQGCAIAKQLGA--EIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccccCccCHHHHHHHHHHcCC--CEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 112223444455543 3689999999998 99999999987644
No 126
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.33 E-value=4.7e-13 Score=126.91 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=86.4
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH-Hh----cCCcEEeeeecCCCCCCC--
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA-FE----SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~----~~lpiIvviNKiDl~~~~-- 89 (547)
++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+....|... .. .++|+++|+||+|+...+
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 147 (201)
T 3oes_A 68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV 147 (201)
T ss_dssp ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCS
T ss_pred CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccccc
Confidence 45678999999999999988888899999999999999987666665544333 22 378999999999986432
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.....+++...++. +++++||++|.|++++++.|.+.+..
T Consensus 148 ~~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 148 QAVEGKKLAESWGA---TFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHHHHHHHHHHHTC---EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC---eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 12334455555554 78999999999999999999987643
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.33 E-value=3.5e-13 Score=135.17 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHH---------HH-HHH--HhhcCEEEEEEECCCCCchhhHHHHHHH
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSY---------EV-SRS--LAACQGALLVVDAAQGVQAQTVANFYLA 69 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~---------~~-~~~--l~~aD~ailVvDa~~g~~~qt~~~~~~~ 69 (547)
+++||+|++. ...+..++||||||+.+|.. .+ ..+ ...+|++++|+|+++ ......++..+
T Consensus 31 ~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l 108 (274)
T 3i8s_A 31 GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQL 108 (274)
T ss_dssp EECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHH
T ss_pred CCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHH
Confidence 5688988654 23456789999999988762 11 222 258999999999987 23345555666
Q ss_pred HhcCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 70 FESELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.+.++|+++|+||+|+...+ .....+++.+.++. +++++||++|.|+++++++|.+.++..
T Consensus 109 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~---~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 109 LELGIPCIVALNMLDIAEKQNIRIEIDALSARLGC---PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTS---CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred HhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCC---CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 77899999999999985321 11123566666764 789999999999999999999888654
No 128
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=121.49 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=85.9
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~---~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+....| ..+.. .++|+++|+||+|+...+
T Consensus 69 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~ 148 (193)
T 2oil_A 69 LGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV 148 (193)
T ss_dssp ETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccccc
Confidence 356678999999999999999999999999999999999987665554444 33332 378999999999996432
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
......++....+ .+++++||++|.|+++++++|.+.+
T Consensus 149 ~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 149 PTEEARMFAENNG---LLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp CHHHHHHHHHHTT---CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1222333444444 3789999999999999999998754
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.32 E-value=3e-13 Score=134.37 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccchHH----------HHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHH
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSY----------EVSRSL--AACQGALLVVDAAQGVQAQTVANFYLA 69 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~----------~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~ 69 (547)
+++||+|++.. ..+..++||||||+.+|.. ....++ ..+|++++|+|+++ .......+..+
T Consensus 29 ~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l 106 (256)
T 3iby_A 29 GNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQL 106 (256)
T ss_dssp EECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHH
T ss_pred cCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHH
Confidence 46899886542 2456899999999988764 233445 67999999999987 23345555666
Q ss_pred HhcCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhh
Q 008991 70 FESELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
.+.++|+++|+||+|+...+ .....+.+.+.++. +++++||++|.|+++++++|.+.
T Consensus 107 ~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~---~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 107 FELGKPVVVALNMMDIAEHRGISIDTEKLESLLGC---SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCS---CEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 77899999999999985322 11124556666764 78999999999999999999887
No 130
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.32 E-value=1.2e-12 Score=120.29 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=80.2
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchH------HHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFS------YEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~------~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++. ...+..+++|||||+.+|. .....+++ .+|++++|+|+++. .+...++..+.+.+
T Consensus 31 ~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~ 108 (165)
T 2wji_A 31 GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMG 108 (165)
T ss_dssp C-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTT
T ss_pred cCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcC
Confidence 3567766543 2235789999999998874 22334443 79999999999862 22334445556679
Q ss_pred CcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 74 LTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 74 lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+|+++|+||+|+...+ .....+++.+.++. +++++||++|.|+++++++|.+.+
T Consensus 109 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 109 ANLLLALNKMDLAKSLGIEIDVDKLEKILGV---KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CCEEEEEECHHHHHHTTCCCCHHHHHHHHTS---CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCEEEEEEchHhccccChhhHHHHHHHHhCC---CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999984321 10113455555553 789999999999999999998865
No 131
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.32 E-value=1.4e-12 Score=123.69 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=84.6
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHH-HHHHhc--CCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANF-YLAFES--ELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~~--~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.++||||||+.+|...+..+++.+|++++|+|+++..+.+.. ..| ..+... ++|+++|+||+|+.....
T Consensus 67 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred EECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 3466678999999999999988888889999999999999886555554 333 333333 899999999999975421
Q ss_pred --------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 91 --------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 --------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.+...++.+.++. .+++++||++|.|++++++.|.+.+
T Consensus 147 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 147 TRRELAKMKQEPVRSEEGRDMANRISA--FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chhhhcccccCcCCHHHHHHHHHhCCC--cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111222233332 3689999999999999999998753
No 132
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.32 E-value=1.4e-12 Score=122.10 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=85.0
Q ss_pred CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHH-HHHHHh----cCCcEEeeeecCCCCCCC-H
Q 008991 17 NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVAN-FYLAFE----SELTIIPVINKIDQPTAD-P 90 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~lpiIvviNKiDl~~~~-~ 90 (547)
...++.+++|||||+.+|...+..+++.+|++++|+|+++..+.+.... +..... .+.|+++|+||+|+.+.. .
T Consensus 62 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 141 (189)
T 2x77_A 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE 141 (189)
T ss_dssp EETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH
Confidence 3357899999999999988888888899999999999998766655433 333333 378999999999997653 2
Q ss_pred HHHHHHHHH-hcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 DRVKAQLKS-MFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~~~~~~i~~-~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+++.+.+.. .......+++++||++|.|+++++++|.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 142 AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 333332221 11112347899999999999999999988764
No 133
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=124.88 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=72.7
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHh--cCCcEEeeeecCCCCCCCH
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFE--SELTIIPVINKIDQPTADP 90 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~lpiIvviNKiDl~~~~~ 90 (547)
..++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+... .| ..+.. .++|+++|+||+|+.....
T Consensus 76 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155 (214)
T ss_dssp EETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH
T ss_pred EECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch
Confidence 34667789999999999999999999999999999999999876666543 33 33332 3799999999999965421
Q ss_pred H--------------HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 91 D--------------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ~--------------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
. ....++.+.++. .+++++||++|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 156 LVNKLRRNGLEPVTYHRGQEMARSVGA--VAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhhhhcccccCcccHHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 111233333332 37899999999999999999988653
No 134
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.31 E-value=1.5e-12 Score=120.69 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHH--------HHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc-
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSY--------EVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES- 72 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~--------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~- 72 (547)
+++||+|++. .-.+..+.+|||||+.++.. ....+++.+|++++|+|+++..+.+...++......
T Consensus 33 ~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~ 112 (172)
T 2gj8_A 33 TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL 112 (172)
T ss_dssp CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS
T ss_pred eCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4678887543 22345689999999976421 123467899999999999988776655555554433
Q ss_pred --CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 73 --ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 73 --~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
++|+++|+||+|+.+...+ .......+++++||++|.|++++++.|.+.+..
T Consensus 113 ~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 113 PAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 6899999999998543210 111123478999999999999999999988754
No 135
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=124.18 Aligned_cols=112 Identities=22% Similarity=0.198 Sum_probs=86.1
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHH-HHh---cCCcEEeeeecCCCCCC---
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYL-AFE---SELTIIPVINKIDQPTA--- 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~---~~lpiIvviNKiDl~~~--- 88 (547)
.++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+....|.. +.. .++|+++|+||+|+...
T Consensus 69 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v 148 (200)
T 2o52_A 69 VGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREV 148 (200)
T ss_dssp ETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS
T ss_pred ECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc
Confidence 35566899999999999998888899999999999999998776666554432 222 47899999999998542
Q ss_pred CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 89 DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 89 ~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
...+ ..++.+..+ .+++++||++|.|+++++++|.+.+.
T Consensus 149 ~~~~-~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 149 TFLE-ASRFAQENE---LMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp CHHH-HHHHHHHTT---CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222 233333344 37899999999999999999987653
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.31 E-value=2.6e-12 Score=138.02 Aligned_cols=121 Identities=21% Similarity=0.349 Sum_probs=87.1
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCC--------ccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPG--------HVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPG--------h~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++. ...+..+++||||| +..+...+..++..+|++|+|+|+.++........+..+...+
T Consensus 52 ~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~ 131 (456)
T 4dcu_A 52 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK 131 (456)
T ss_dssp ---------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCC
T ss_pred CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcC
Confidence 4789999864 44567899999999 7778888889999999999999999999999988888888889
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+|+++|+||+|+.... +.+.+.+.+...+.+++||++|.|+.+|++.+.+.++.
T Consensus 132 ~pvilV~NK~D~~~~~-----~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 132 KPVVLAVNKLDNTEMR-----ANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp SCEEEEEECC--------------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred CCEEEEEECccchhhh-----hhHHHHHHcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 9999999999986432 12222222223356899999999999999999988764
No 137
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=123.60 Aligned_cols=114 Identities=20% Similarity=0.125 Sum_probs=86.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHh--cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFE--SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~--~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+... .| ..+.. .++|+++|+||+|+....
T Consensus 63 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 142 (201)
T 2q3h_A 63 VDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKV 142 (201)
T ss_dssp ETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHH
T ss_pred ECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhh
Confidence 4566788999999999999888888899999999999999876666543 33 33333 389999999999986421
Q ss_pred ------------HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 ------------PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ------------~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+...++.+.++. .+++++||++|.|+++++++|.+.+.
T Consensus 143 ~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 143 LIELDKCKEKPVPEEAAKLLAEEIKA--ASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhhcccccccCCHHHHHHHHHhcCC--cEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 11223344444442 37899999999999999999988764
No 138
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.30 E-value=7.8e-12 Score=115.43 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=79.6
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HH---Hh---cCCcEEeeeecCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LA---FE---SELTIIPVINKIDQPT 87 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~---~~---~~lpiIvviNKiDl~~ 87 (547)
..++..+.+++|||||+.+ ..+++.+|++++|+|+++..+.+....|. .. .. .++|+++|+||+|+..
T Consensus 48 ~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 48 LVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp EETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred EECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 3466778999999999987 35678899999999999877766665542 22 22 3789999999999842
Q ss_pred -----CCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 88 -----ADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 88 -----~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
...++ .+++...++ ..+++++||++|.|++++++.|.+.+
T Consensus 123 ~~~~~v~~~~-~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 123 SSPRVVGDAR-ARALXADMK--RCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TBCCCSCHHH-HHHHHHHHS--SEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cccCcCCHHH-HHHHHHhhc--CCeEEEEeccccCCHHHHHHHHHHHH
Confidence 12222 233333332 24789999999999999999998765
No 139
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.97 E-value=2e-13 Score=129.68 Aligned_cols=115 Identities=21% Similarity=0.166 Sum_probs=83.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHhc--CCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFES--ELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.+++|||||+.+|...+..++..+|++++|+|++++.+.+... .| ..+... ++|+++|+||+|+...+.
T Consensus 73 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~ 152 (204)
T 3th5_A 73 VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT 152 (204)
Confidence 3556788889999999999999999999999999999999887666653 34 333333 789999999999965321
Q ss_pred ----------HHHHHHHHHhcC-CCCccceeccccccccccccHHHHHhhC
Q 008991 91 ----------DRVKAQLKSMFD-LDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 91 ----------~~~~~~i~~~l~-~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
....++..+... ....+++++||++|.|++++++.|.+.+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 153 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 000111111111 1112689999999999999999987653
No 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=1.6e-12 Score=123.95 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=85.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHH-HHHHhc--CCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANF-YLAFES--ELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~~--~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.+.||||||+.+|...+..++..+|++++|+|+++..+.+.. ..| ..+... ++|+++|+||+|+.....
T Consensus 68 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 147 (207)
T 2fv8_A 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHV 147 (207)
T ss_dssp ETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHH
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccc
Confidence 456678999999999999988888889999999999999886555544 333 333333 899999999999965421
Q ss_pred H-------------HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 91 D-------------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 91 ~-------------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
. ....++...++ ..+++++||++|.|+++++++|.+.+..+
T Consensus 148 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 148 RTELARMKQEPVRTDDGRAMAVRIQ--AYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred hhhhhhcccCCCCHHHHHHHHHhcC--CCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 0 01112222222 23689999999999999999999876544
No 141
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.1e-12 Score=126.65 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=85.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+.+|...+..+++.+|++|+|+|+++..+.+....|. .+.. .++|+++|+||+|+...+
T Consensus 57 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v 136 (223)
T 3cpj_B 57 IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAV 136 (223)
T ss_dssp ETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCS
T ss_pred ECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccc
Confidence 4566689999999999999888888999999999999999877766655443 3332 378999999999996421
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
......++.+..+ .+++++||++|.||++++++|.+.+..
T Consensus 137 ~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 137 PTEESKTFAQENQ---LLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CHHHHHHHHHHTT---CEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1222334444444 378999999999999999999987754
No 142
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=120.14 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=81.8
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh------cCCcEEeeeecCCCCCC
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE------SELTIIPVINKIDQPTA 88 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~------~~lpiIvviNKiDl~~~ 88 (547)
.++..+.++||||||+.+|.. +..+++.+|++++|+|+++..+.+....| ..+.. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 64 VDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp ETTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred ECCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 466778999999999998876 46788999999999999987666655444 33322 48999999999999643
Q ss_pred C--HHHHHHHHHHhcCCCCccceeccc-cccccccccHHHHHhhC
Q 008991 89 D--PDRVKAQLKSMFDLDPSEALLTSA-KTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~--~~~~~~~i~~~l~~~~~~vi~~SA-k~g~Gv~~Ll~~l~~~i 130 (547)
+ ..+..+++.+.+++ +++++|| ++|.|++++++.|++.+
T Consensus 143 ~~v~~~~~~~~~~~~~~---~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 143 RQVTKAEGVALAGRFGC---LFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSSCHHHHHHHHHHHTC---EEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHcCC---cEEEEeecCccccHHHHHHHHHHHH
Confidence 2 12223445555554 7899999 89999999999998764
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.28 E-value=2.1e-12 Score=120.49 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=84.8
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHHH-HHHh--cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANFY-LAFE--SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~-~~~~--~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+.. ..|. .... .+.|+++|+||+|+....
T Consensus 50 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 129 (184)
T 1m7b_A 50 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST 129 (184)
T ss_dssp CSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH
T ss_pred ECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhh
Confidence 466778999999999999988888888999999999999987666654 3443 3333 379999999999996421
Q ss_pred ------------HHHHHHHHHHhcCCCCccceecccc-ccccccccHHHHHhhC
Q 008991 90 ------------PDRVKAQLKSMFDLDPSEALLTSAK-TGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ------------~~~~~~~i~~~l~~~~~~vi~~SAk-~g~Gv~~Ll~~l~~~i 130 (547)
..+..+++.+.++ ..+++++||+ +|.|++++++.+.+.+
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 130 LVELSNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCCCCHHHHHHHHHHcC--CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1122333444444 2478999999 6999999999998753
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.28 E-value=6.8e-12 Score=135.39 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=91.6
Q ss_pred CCCCCeEEEeCC-----CceEEEEEeCCCcc-chH--------HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 7 LNGPGTSEAHNP-----SSFLLNLIDTPGHV-DFS--------YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 7 s~~pG~T~~~~~-----~~~~l~liDTPGh~-df~--------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
+++||||++... .++.++||||||+. ++. .....++..||++|+|+|++++.+.+..+.+..+ .
T Consensus 272 s~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~ 349 (482)
T 1xzp_A 272 TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--K 349 (482)
T ss_dssp CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--T
T ss_pred CCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--c
Confidence 678999986532 45788999999998 653 3456788999999999999998877777766554 4
Q ss_pred CCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 73 ELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+.|+++|+||+|+..... .+++.+.++. ..+++++||++|.|+++|+++|.+.+.
T Consensus 350 ~~piivV~NK~DL~~~~~---~~~~~~~~~~-~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEKIN---EEEIKNKLGT-DRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TSSEEEEEEECSSCCCCC---HHHHHHHHTC-STTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCCEEEEEECcccccccC---HHHHHHHhcC-CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 889999999999975411 1334444442 247899999999999999999988764
No 145
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.28 E-value=1.1e-12 Score=131.43 Aligned_cols=121 Identities=20% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCCCCCeEEEe-----CCCceEEEEEeCCCccchH------HHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 6 ELNGPGTSEAH-----NPSSFLLNLIDTPGHVDFS------YEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 6 ~s~~pG~T~~~-----~~~~~~l~liDTPGh~df~------~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
.+++||+|++. +. ++.+++|||||+.+|. .....++. .+|++++|+|+++. .....++..+.+.
T Consensus 30 v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~ 106 (272)
T 3b1v_A 30 VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIET 106 (272)
T ss_dssp CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT
T ss_pred ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhc
Confidence 46889998854 33 5689999999999885 33444555 59999999999873 2234444556678
Q ss_pred CCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 73 ELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
++|+++|+||+|+.... .....+++.+.+++ +++++||++|.|+++++++|.+.+..
T Consensus 107 ~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~---~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 107 GIPVTIALNMIDVLDGQGKKINVDKLSYHLGV---PVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTS---CEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCC---CEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 99999999999984321 11123556666664 78999999999999999999987644
No 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.28 E-value=7.4e-12 Score=128.86 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=82.0
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HHHHHHh----cCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NFYLAFE----SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~lpiIvviNKiDl~~~~- 89 (547)
.+..++.++||||||+.+|...+..++..+|++|+|+|+++..+.+... .|..... .++|+++|+||+|+.+..
T Consensus 204 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 283 (329)
T 3o47_A 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283 (329)
T ss_dssp EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence 3456789999999999999999999999999999999998876665543 3322222 278999999999997653
Q ss_pred HHHHHHHHHHhc-CCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 PDRVKAQLKSMF-DLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 ~~~~~~~i~~~l-~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+++.+++.... .....+++++||++|.||+++++.|.+.+.
T Consensus 284 ~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 333333322111 112346899999999999999999998764
No 147
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.27 E-value=9.1e-12 Score=135.04 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=94.2
Q ss_pred CCCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHHh----cCCcEEeee
Q 008991 7 LNGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAFE----SELTIIPVI 80 (547)
Q Consensus 7 s~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~lpiIvvi 80 (547)
.+|.|+++. ++.+++.++||||||+.+|...+..++..+|++|+|+|+++..+.+....| ..... .++|+|+|+
T Consensus 351 ~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 430 (497)
T 3lvq_E 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 430 (497)
T ss_dssp CCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred CCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEE
Confidence 356777665 456778999999999999999999999999999999999998766665433 22222 479999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCCC-----CccceeccccccccccccHHHHHhhCCC
Q 008991 81 NKIDQPTADPDRVKAQLKSMFDLD-----PSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 81 NKiDl~~~~~~~~~~~i~~~l~~~-----~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
||+|+.+.... +++.+.++.. ..+++++||++|.||++++++|.+.+..
T Consensus 431 NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 431 NKQDLPDAMKP---HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ECCSSSSCCCH---HHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred ECCCCCcCCCH---HHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999765321 2333334332 3368999999999999999999998754
No 148
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=9.2e-12 Score=117.32 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=83.6
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH----hcCCcEEeeeecCCCCCCC-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF----ESELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~----~~~lpiIvviNKiDl~~~~- 89 (547)
.++..+.++||||||+.+ ...+...+..+|++++|+|+++..+.+....| ..+. ..++|+++|+||+|+...+
T Consensus 71 ~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~ 149 (196)
T 2atv_A 71 IDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ 149 (196)
T ss_dssp ETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC
T ss_pred ECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccc
Confidence 466778999999999998 77788889999999999999886555443333 2222 2489999999999996531
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccc-cccccHHHHHhhC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQ-GLEHVLPAVIERI 130 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~-Gv~~Ll~~l~~~i 130 (547)
......++.+.++ .+++++||++|. |+++++++|.+.+
T Consensus 150 v~~~~~~~~~~~~~---~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 150 VSTEEGEKLATELA---CAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp SCHHHHHHHHHHHT---SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhC---CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 1222334444444 378999999999 9999999998765
No 149
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.26 E-value=1.3e-12 Score=130.02 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=89.0
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccchHH------HHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSY------EVSRSL--AACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~------~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|++.. ..++.++||||||+.+|.. .....+ ..+|++++|+|+++.. ....++..+.+.+
T Consensus 33 ~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~ 110 (258)
T 3a1s_A 33 ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEME 110 (258)
T ss_dssp EECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTT
T ss_pred cCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcC
Confidence 46789887652 3467899999999988753 123334 4799999999998742 3345566677789
Q ss_pred CcEEeeeecCCCCCCCH-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 74 LTIIPVINKIDQPTADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+|+++|+||+|+...+. ....+++.+.+++ +++++||++|.|++++++++.+...
T Consensus 111 ~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~---~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 111 KKVILAMTAIDEAKKTGMKIDRYELQKHLGI---PVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCEEEEEECHHHHHHTTCCBCHHHHHHHHCS---CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEECcCCCCccchHHHHHHHHHHcCC---CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 99999999999843211 1113566666764 7899999999999999999988764
No 150
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.26 E-value=5.5e-12 Score=119.12 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCceEEEEEeCCCccchHHHH---HHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH-----hcCCcEEeeeecCCCCCC
Q 008991 18 PSSFLLNLIDTPGHVDFSYEV---SRSLAACQGALLVVDAAQGVQAQTVANF-YLAF-----ESELTIIPVINKIDQPTA 88 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~---~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~-----~~~lpiIvviNKiDl~~~ 88 (547)
+..+.++||||||+.+|.... ..+++.+|++|+|+|+++. ..++...| .... ..++|+++|+||+|+.+.
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 677899999999999997777 7899999999999999987 33332222 2222 248999999999998653
Q ss_pred CH-----HHH----HHHHHHhcC-CCCccceeccccccccccccHHHHHhhC
Q 008991 89 DP-----DRV----KAQLKSMFD-LDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~-----~~~----~~~i~~~l~-~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+. ..+ .+++.+... ....+++++||++ .||+++|+.|++.+
T Consensus 145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 21 111 122222110 1234789999999 99999999998764
No 151
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.26 E-value=8.2e-12 Score=121.01 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCCeEEEeC-----CCceEEEEEeCCCcc------ch---HHHHHHHHhhcCEEEEEEECCCCCchhh---HHHHHHHH
Q 008991 8 NGPGTSEAHN-----PSSFLLNLIDTPGHV------DF---SYEVSRSLAACQGALLVVDAAQGVQAQT---VANFYLAF 70 (547)
Q Consensus 8 ~~pG~T~~~~-----~~~~~l~liDTPGh~------df---~~~~~~~l~~aD~ailVvDa~~g~~~qt---~~~~~~~~ 70 (547)
+++++|++.. ...+.+.||||||+. .. ...+......+|++++|+|+++..+.+. ..++..+.
T Consensus 58 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~ 137 (228)
T 2qu8_A 58 SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK 137 (228)
T ss_dssp CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHH
T ss_pred CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHH
Confidence 4566666442 245789999999994 31 1223344677899999999998765442 33444444
Q ss_pred hc--CCcEEeeeecCCCCCCCH--HH---HHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 71 ES--ELTIIPVINKIDQPTADP--DR---VKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 71 ~~--~lpiIvviNKiDl~~~~~--~~---~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.. ++|+++|+||+|+...+. .. ..+++....+ ...+++++||++|.||++++++|.+.+.
T Consensus 138 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 138 SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK-NPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp TCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC-SCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC-CCceEEEEecccCCCHHHHHHHHHHHHH
Confidence 44 899999999999965321 11 2233333332 1247899999999999999999988764
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.25 E-value=6.6e-12 Score=127.91 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=90.4
Q ss_pred CCCCeEEEeC------CCceEEEEEeCCCccch-----HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH----H--
Q 008991 8 NGPGTSEAHN------PSSFLLNLIDTPGHVDF-----SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLA----F-- 70 (547)
Q Consensus 8 ~~pG~T~~~~------~~~~~l~liDTPGh~df-----~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~----~-- 70 (547)
+++|+|.+.+ .+++.+++|||||+.+| ...+...++.+|++++|+|+++..+.+....|... .
T Consensus 33 ~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~ 112 (307)
T 3r7w_A 33 RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY 112 (307)
T ss_dssp GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh
Confidence 4566666432 23688999999999998 55667778899999999999998877776554321 1
Q ss_pred hcCCcEEeeeecCCCCCCCHH--------HHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 71 ESELTIIPVINKIDQPTADPD--------RVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 71 ~~~lpiIvviNKiDl~~~~~~--------~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
..++|+++|+||+|+...+.. ...+++.+.+|.+..+++++||++ .|+.+++..++..+-+
T Consensus 113 ~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 113 SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 128999999999999763221 223344445565456899999999 8999998888876643
No 153
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.24 E-value=4.9e-12 Score=120.88 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=84.4
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-HHH-HHHHh--cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-ANF-YLAFE--SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~-~~~~~--~~lpiIvviNKiDl~~~~-- 89 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+.. ..| ..+.. .+.|+++|+||+|+....
T Consensus 71 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 150 (205)
T 1gwn_A 71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST 150 (205)
T ss_dssp SSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH
T ss_pred ECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhh
Confidence 366789999999999999988888888999999999999987665554 344 33333 378999999999996421
Q ss_pred ------------HHHHHHHHHHhcCCCCccceecccc-ccccccccHHHHHhhC
Q 008991 90 ------------PDRVKAQLKSMFDLDPSEALLTSAK-TGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ------------~~~~~~~i~~~l~~~~~~vi~~SAk-~g~Gv~~Ll~~l~~~i 130 (547)
..+..+++.+.++ ..+++++||+ +|.|++++|+.|.+.+
T Consensus 151 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 151 LVELSNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred hhhhcccccCCCCHHHHHHHHHHcC--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 0112234444444 2478999999 6999999999998753
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=3e-11 Score=129.11 Aligned_cols=124 Identities=23% Similarity=0.209 Sum_probs=87.9
Q ss_pred CCCCCeEEEeCC-----CceEEEEEeCCCccchHH------------HHHHHHhhcCEEEEEEECCCCCchhhHHHHHHH
Q 008991 7 LNGPGTSEAHNP-----SSFLLNLIDTPGHVDFSY------------EVSRSLAACQGALLVVDAAQGVQAQTVANFYLA 69 (547)
Q Consensus 7 s~~pG~T~~~~~-----~~~~l~liDTPGh~df~~------------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~ 69 (547)
|++||+|++... .+..+.+|||||+..+.. ....++..+|++++|+|++++...+....+..+
T Consensus 209 ~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l 288 (439)
T 1mky_A 209 SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLM 288 (439)
T ss_dssp CCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHH
T ss_pred CCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 688999987532 345788999999854432 224578889999999999999888887777777
Q ss_pred HhcCCcEEeeeecCCCCCCC---HHHHHHHHHHhcC-CCCccceeccccccccccccHHHHHhhC
Q 008991 70 FESELTIIPVINKIDQPTAD---PDRVKAQLKSMFD-LDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~---~~~~~~~i~~~l~-~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
...+.|+++|+||+|+...+ .++..+++.+.+. ....+++++||++|.|++++++.+.+.+
T Consensus 289 ~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 289 ERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp HHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999997543 2334445544442 2345789999999999999999998755
No 155
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.21 E-value=4.1e-12 Score=118.33 Aligned_cols=123 Identities=23% Similarity=0.277 Sum_probs=81.6
Q ss_pred CCCCeEEEeCCCc-eEEEEEeCCC-----------ccchHHHHHHHHhh----cCEEEEEEECCCCCc-----------h
Q 008991 8 NGPGTSEAHNPSS-FLLNLIDTPG-----------HVDFSYEVSRSLAA----CQGALLVVDAAQGVQ-----------A 60 (547)
Q Consensus 8 ~~pG~T~~~~~~~-~~l~liDTPG-----------h~df~~~~~~~l~~----aD~ailVvDa~~g~~-----------~ 60 (547)
..||+|+....-. ..+++||||| +..|...+..++.. +++++.|+|+..... .
T Consensus 30 ~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~ 109 (190)
T 2cxx_A 30 KRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIP 109 (190)
T ss_dssp SSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCC
T ss_pred CCCCccceeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccH
Confidence 4567654331100 1578999999 55666666666654 455666666543111 1
Q ss_pred hhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCC----ccceeccccccccccccHHHHHhhCC
Q 008991 61 QTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDP----SEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 61 qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~----~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
++...+..+...++|+++|+||+|+.... .+..+++.+.++... .+++++||++|.|+++++++|.+.+.
T Consensus 110 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 110 IDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 12223344455789999999999997654 445667777777642 25799999999999999999988764
No 156
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.21 E-value=4.5e-12 Score=118.11 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=85.8
Q ss_pred CCCCeEEEe-----CCCceEEEEEeCCCccchH------HHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCC
Q 008991 8 NGPGTSEAH-----NPSSFLLNLIDTPGHVDFS------YEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESEL 74 (547)
Q Consensus 8 ~~pG~T~~~-----~~~~~~l~liDTPGh~df~------~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l 74 (547)
++||+|.+. ...++.+++|||||+.+|. .....++. .+|++++|+|++. ..+...++..+...+.
T Consensus 36 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~ 113 (188)
T 2wjg_A 36 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGA 113 (188)
T ss_dssp ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTC
T ss_pred CCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCC
Confidence 456766543 2345789999999999884 23344444 4999999999875 2223445555666789
Q ss_pred cEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 75 TIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 75 piIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
|+++|+||+|+.... .....+++.+.++. +++++||++|.|++++++.+.+.++..
T Consensus 114 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 114 NLLLALNKMDLAKSLGIEIDVDKLEKILGV---KVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CEEEEEECHHHHHHTTCCCCHHHHHHHHTS---CEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred CEEEEEEhhhccccccchHHHHHHHHHhCC---CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 999999999984321 11123455555554 789999999999999999999887653
No 157
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.18 E-value=8e-12 Score=127.26 Aligned_cols=116 Identities=20% Similarity=0.143 Sum_probs=86.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH-HH-HHHHhc--CCcEEeeeecCCCCCCCH-
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA-NF-YLAFES--ELTIIPVINKIDQPTADP- 90 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~-~~~~~~--~lpiIvviNKiDl~~~~~- 90 (547)
.++..+.++||||||+.+|...+..++..+|++++|+|+++..+.+... .| ..+... ++|+++|+||+|+.....
T Consensus 198 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 277 (332)
T 2wkq_A 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT 277 (332)
T ss_dssp ETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHH
T ss_pred ECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccch
Confidence 3566788889999999999988888899999999999999877666643 33 333333 899999999999854311
Q ss_pred -------------HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 91 -------------DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 91 -------------~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.....++.+.++. .+++++||++|.|++++++.|.+.+..|
T Consensus 278 ~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 278 IEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred hhhccccccccccHHHHHHHHHHcCC--cEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 1112223333332 3789999999999999999998876443
No 158
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.18 E-value=1.3e-11 Score=123.34 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=89.3
Q ss_pred CCCCCeEEEeC-----CCceEEEEEeCCCccchHH------HHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAHN-----PSSFLLNLIDTPGHVDFSY------EVSRSL--AACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~~-----~~~~~l~liDTPGh~df~~------~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
+++||+|.+.. ..+..+++|||||+.+|.. .+..++ ..+|++++|+|++++ .++..++..+.+.+
T Consensus 31 ~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~ 108 (271)
T 3k53_A 31 GNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEME 108 (271)
T ss_dssp EECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTT
T ss_pred CCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcC
Confidence 46788877642 2456799999999988765 333444 469999999999885 45566666777777
Q ss_pred -CcEEeeeecCCCCC---CCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 74 -LTIIPVINKIDQPT---ADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 74 -lpiIvviNKiDl~~---~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+|+++|+||+|+.. ...+ .+++.+.++. +++++||++|.|++++++.+.+.+.
T Consensus 109 ~~p~ilv~NK~Dl~~~~~~~~~--~~~l~~~lg~---~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 109 VKNIILVLNKFDLLKKKGAKID--IKKMRKELGV---PVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp CCSEEEEEECHHHHHHHTCCCC--HHHHHHHHSS---CEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCcccccHHH--HHHHHHHcCC---cEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 99999999999632 1111 4566777774 7899999999999999999988753
No 159
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.16 E-value=2.5e-11 Score=120.09 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCccchH-----------HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc-----CCcEEeeee-
Q 008991 19 SSFLLNLIDTPGHVDFS-----------YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES-----ELTIIPVIN- 81 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~-----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~lpiIvviN- 81 (547)
.++.++||||||+.++. ..+..+++.+|++++|+|++. ...++...+..+.+. +.|.++++|
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~n 147 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTH 147 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEc
Confidence 46789999999998863 223346778999999999985 666766666666554 678888887
Q ss_pred cCCCCCCCHHHHH--------HHHHHhcCCCC--ccceeccccccccccccHHHHHhhCCC
Q 008991 82 KIDQPTADPDRVK--------AQLKSMFDLDP--SEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 82 KiDl~~~~~~~~~--------~~i~~~l~~~~--~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
|+|+.+.+..... +++.+.++... ...+++||++|.|++++++.|.+.++.
T Consensus 148 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 148 KEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 9999866554321 12333333211 112899999999999999999987653
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.14 E-value=6.4e-12 Score=134.96 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=80.9
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccchHHHHHH--------HHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVDFSYEVSR--------SLAACQGALLVVDAAQGVQAQTVANFYLAFESE 73 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~df~~~~~~--------~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~ 73 (547)
++.||+|++. .-.++.++||||||+.++...+.. .+..+|++++|+|++++...+...++..+. +
T Consensus 253 ~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~ 330 (462)
T 3geh_A 253 TDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--H 330 (462)
T ss_dssp SCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--T
T ss_pred cCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--C
Confidence 5789998765 234578899999999887654443 466799999999999988888777666553 4
Q ss_pred CcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCC
Q 008991 74 LTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPP 133 (547)
Q Consensus 74 lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p 133 (547)
.|+++|+||+|+....... .+.+ +. ...+++++||++|.|+++++++|.+.+...
T Consensus 331 ~piivV~NK~Dl~~~~~~~---~~~~-~~-~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLIT---SLEY-PE-NITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp SCEEEEEECTTSSCGGGST---TCCC-CT-TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCCCCcchhhH---HHHH-hc-cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 7999999999997643211 1111 11 234789999999999999999999987554
No 161
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=5.9e-11 Score=114.30 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=80.9
Q ss_pred EeCCCceEEEEEeCCCccc-hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVD-FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPTA 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~d-f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~~ 88 (547)
.+++..+.+.+|||+|... +......+++.+|++++|+|.++..+.+....|. .+.. .++|+++|+||+|+...
T Consensus 81 ~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 160 (211)
T 2g3y_A 81 MVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 160 (211)
T ss_dssp EETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred EECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence 4567778899999999987 4333444456799999999999866665554443 3332 37999999999999642
Q ss_pred C-H-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 89 D-P-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~-~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+ . .+..+.+...++. +++++||++|.||+++|+.|++.+
T Consensus 161 r~v~~~e~~~~a~~~~~---~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 161 REVSVSEGRACAVVFDC---KFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp CCSCHHHHHHHHHHHTC---EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEeHHHHHHHHHHcCC---EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 1 1122333344443 789999999999999999998865
No 162
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.09 E-value=1.4e-10 Score=118.46 Aligned_cols=112 Identities=16% Similarity=0.328 Sum_probs=81.4
Q ss_pred CceEEEEEeCCCccchHH---HHHHHHhhcCEEEEEEECCCCCchhhHHHHHH----HH--hcCCcEEeeeecCCCCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSY---EVSRSLAACQGALLVVDAAQGVQAQTVANFYL----AF--ESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~---~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~----~~--~~~lpiIvviNKiDl~~~~ 89 (547)
..++++||||||+++|.. .+..+++.++++|+|+|+++. ......+|.. +. ..++|+++++||+|+...+
T Consensus 44 ~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 458899999999999963 467889999999999999987 4455555532 21 2479999999999997643
Q ss_pred H-----HHHHHHHHHhc-CC----CCccceeccccccccccccHHHHHhhCCC
Q 008991 90 P-----DRVKAQLKSMF-DL----DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 90 ~-----~~~~~~i~~~l-~~----~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
. ..+.++..+.+ .. ...+++++||++ .||.+.|..+++.+.+
T Consensus 123 ~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 123 FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred hhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 2 12222222222 21 235789999998 5999999999987765
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.07 E-value=4.3e-11 Score=111.78 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHHH-HHHh--cCCcEEeeeecCCCCCCCHH-H
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANFY-LAFE--SELTIIPVINKIDQPTADPD-R 92 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~-~~~~--~~lpiIvviNKiDl~~~~~~-~ 92 (547)
+..+.+++|||||+.+|......+++.+|++++|+|.+++. +......|. .+.. .+.|+++|+||+|+...... .
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 132 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKA 132 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHH
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHH
Confidence 35788999999999999887888899999999999998863 344444442 2222 37899999999999654221 1
Q ss_pred H----HHHHHHhcCCC-Cccceeccccccc-cccccHHHHHhhCCC
Q 008991 93 V----KAQLKSMFDLD-PSEALLTSAKTGQ-GLEHVLPAVIERIPP 132 (547)
Q Consensus 93 ~----~~~i~~~l~~~-~~~vi~~SAk~g~-Gv~~Ll~~l~~~ip~ 132 (547)
. .+++.+.+++. ..+++++||++|. |+++|++.|.+.++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 133 CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 1 12222222321 0138999999996 999999999887654
No 164
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.05 E-value=6e-10 Score=115.10 Aligned_cols=109 Identities=22% Similarity=0.228 Sum_probs=81.1
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCC---CCchhhHHHH-HHHHh-----cCCcEEeeeecCC
Q 008991 21 FLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQ---GVQAQTVANF-YLAFE-----SELTIIPVINKID 84 (547)
Q Consensus 21 ~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~---g~~~qt~~~~-~~~~~-----~~lpiIvviNKiD 84 (547)
..+.||||||+.+ +.....+.+..||++|+|+|+++ ....+....| ..+.. .++|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 6899999999754 44566677778999999999987 3333443333 33333 3789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 85 QPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 85 l~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+... .+..+++.+.++.. .+++++||+++.|+++|+++|.+.+..
T Consensus 286 l~~~--~e~~~~l~~~l~~~-~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 286 MPEA--AENLEAFKEKLTDD-YPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp STTH--HHHHHHHHHHCCSC-CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCCC--HHHHHHHHHHhhcC-CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 9753 33455666666532 478999999999999999999988754
No 165
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.05 E-value=2.4e-10 Score=107.76 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=78.7
Q ss_pred EeCCCceEEEEEeCCCccc-hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh----cCCcEEeeeecCCCCCC
Q 008991 15 AHNPSSFLLNLIDTPGHVD-FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE----SELTIIPVINKIDQPTA 88 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~d-f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~lpiIvviNKiDl~~~ 88 (547)
.+++..+.+.+|||+|... +......+++.+|++++|+|.++..+.+....|. .... .++|+++|.||+|+...
T Consensus 50 ~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 50 MVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX 129 (192)
T ss_dssp EETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG
T ss_pred EECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc
Confidence 4467778899999999876 3333455677899999999999876666554443 2322 37899999999998542
Q ss_pred CH--HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 89 DP--DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 89 ~~--~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+. ....+.+...++ .+++++||++|.||+++|+.|++.+
T Consensus 130 r~v~~~~~~~~a~~~~---~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 130 REVSVSEGRAXAVVFD---XKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp CCSCHHHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhC---CceEEeccccCCCHHHHHHHHHHHH
Confidence 21 111223333333 3789999999999999999998866
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.03 E-value=4e-10 Score=112.65 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCceEEEEEeCCCccc-------hHHHH-------HHHHhh-------------cCEEEEEEECCC-CCchhhHHHHHH
Q 008991 17 NPSSFLLNLIDTPGHVD-------FSYEV-------SRSLAA-------------CQGALLVVDAAQ-GVQAQTVANFYL 68 (547)
Q Consensus 17 ~~~~~~l~liDTPGh~d-------f~~~~-------~~~l~~-------------aD~ailVvDa~~-g~~~qt~~~~~~ 68 (547)
++..+.+++|||||+.+ |...+ ..++.. +|+++++++.+. +....+...+..
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~ 140 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 140 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence 34457999999999943 22222 444554 789999997654 778888887777
Q ss_pred HHhcCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 69 AFESELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 69 ~~~~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+.. ++|+|+|+||+|+.... .....+.+.+.+.....+++.+||+++.|+++++++|.+.+|-
T Consensus 141 l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 141 LHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred Hhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 766 89999999999986422 2333344444443334468899999999999999999988753
No 167
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.03 E-value=1e-10 Score=128.09 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc--CCcEEeeeecCCCCCCCHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES--ELTIIPVINKIDQPTADPDRVKA 95 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~lpiIvviNKiDl~~~~~~~~~~ 95 (547)
+..+.+++|||||+..|.......++.+|++++|+|++.. .....++..+... +.|+|+|+||+|+...+.. ..+
T Consensus 95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v-~~~ 171 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNI-EQK 171 (535)
T ss_dssp TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCC-CHH
T ss_pred CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccccccc-CHH
Confidence 4578999999999999988888889999999999999865 2233444445443 4999999999999754321 012
Q ss_pred HHHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 96 QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 96 ~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
++.+.+.....+++++||++|.|++++++.|.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 172 KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 333333222346899999999999999999999876543
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.01 E-value=3e-10 Score=114.20 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=79.9
Q ss_pred ceEEEEEeCCCcc-------------chHHHHHHHHhhcCEEE-EEEECCCCCchhhH-HHHHHHHhcCCcEEeeeecCC
Q 008991 20 SFLLNLIDTPGHV-------------DFSYEVSRSLAACQGAL-LVVDAAQGVQAQTV-ANFYLAFESELTIIPVINKID 84 (547)
Q Consensus 20 ~~~l~liDTPGh~-------------df~~~~~~~l~~aD~ai-lVvDa~~g~~~qt~-~~~~~~~~~~lpiIvviNKiD 84 (547)
...++||||||+. .+...+..++..++.++ +|+|++.+...+.. .++..+...+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 3689999999974 45667778888888877 69999988777764 455555567899999999999
Q ss_pred CCCCCHHHHHHHHHHhc-CC--CCccceeccccccccccccHHHHHhh
Q 008991 85 QPTADPDRVKAQLKSMF-DL--DPSEALLTSAKTGQGLEHVLPAVIER 129 (547)
Q Consensus 85 l~~~~~~~~~~~i~~~l-~~--~~~~vi~~SAk~g~Gv~~Ll~~l~~~ 129 (547)
+...... ..+.++..+ .+ ...+++++||++|.|+++++++|.+.
T Consensus 204 l~~~~~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 204 LMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GSCTTCC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cCCCCch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 9654321 122333221 11 22478999999999999999999874
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.93 E-value=1.3e-09 Score=113.16 Aligned_cols=110 Identities=22% Similarity=0.312 Sum_probs=72.8
Q ss_pred CceEEEEEeCCCccchHH--------HHHHHH-hhcCEEEEEEECCCCC--chhhH-HHHHHHHh-c-CCcEEeeeecCC
Q 008991 19 SSFLLNLIDTPGHVDFSY--------EVSRSL-AACQGALLVVDAAQGV--QAQTV-ANFYLAFE-S-ELTIIPVINKID 84 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~--------~~~~~l-~~aD~ailVvDa~~g~--~~qt~-~~~~~~~~-~-~lpiIvviNKiD 84 (547)
.+..+.+|||||+.++.. ....++ ..+|++++|+|++.+. ..+.. .++..... . +.|+++|+||+|
T Consensus 212 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 212 GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID 291 (357)
T ss_dssp TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTT
T ss_pred cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 356799999999966421 111222 3599999999987754 44443 33333332 2 899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 85 QPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 85 l~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+.... .. +++.+.......+++++||++|+|+++++++|.+.+.
T Consensus 292 l~~~~--~~-~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 292 VADEE--NI-KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TCCHH--HH-HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cCChH--HH-HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 96532 11 2222221111247899999999999999999988763
No 170
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.92 E-value=5.6e-10 Score=113.30 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=80.6
Q ss_pred ceEEEEEeCCCccc-------------hHHHHHHHHhhcCEEEEEEEC-CCCCchhh-HHHHHHHHhcCCcEEeeeecCC
Q 008991 20 SFLLNLIDTPGHVD-------------FSYEVSRSLAACQGALLVVDA-AQGVQAQT-VANFYLAFESELTIIPVINKID 84 (547)
Q Consensus 20 ~~~l~liDTPGh~d-------------f~~~~~~~l~~aD~ailVvDa-~~g~~~qt-~~~~~~~~~~~lpiIvviNKiD 84 (547)
...++||||||+.+ +...+..++..+|++++|+|+ +.+...+. ...+..+...+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 35799999999864 667778899999999999997 55555444 3566666667899999999999
Q ss_pred CCCCCHHHHHHHHHHhc-C--CCCccceeccccc---cccccccHHHHHhhCCC
Q 008991 85 QPTADPDRVKAQLKSMF-D--LDPSEALLTSAKT---GQGLEHVLPAVIERIPP 132 (547)
Q Consensus 85 l~~~~~~~~~~~i~~~l-~--~~~~~vi~~SAk~---g~Gv~~Ll~~l~~~ip~ 132 (547)
+...+. ...+.+...+ . ....++..+||.+ +.|+.++++.+.+.+|.
T Consensus 210 l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 210 LMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 965432 1233333321 1 2334567777777 78999999999888764
No 171
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.90 E-value=2.1e-09 Score=105.81 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=80.3
Q ss_pred CCCceEEEEEeCCCc--------cchHHHHHHHH----hhcCEEEEEEECCCCCchhhHHHHHHHHhc------CCcEEe
Q 008991 17 NPSSFLLNLIDTPGH--------VDFSYEVSRSL----AACQGALLVVDAAQGVQAQTVANFYLAFES------ELTIIP 78 (547)
Q Consensus 17 ~~~~~~l~liDTPGh--------~df~~~~~~~l----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~------~lpiIv 78 (547)
...+..++||||||. .+|..++.+++ ..+|++|+|+|++. ....+...+..+.+. +.|+|+
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEE
Confidence 345678999999998 55667777776 88999999999974 666666666655553 789999
Q ss_pred eeecCCCCCCCHHHHH--------HHHHHhcCCCCccceecc-----ccccccccccHHHHHhhCCC
Q 008991 79 VINKIDQPTADPDRVK--------AQLKSMFDLDPSEALLTS-----AKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 79 viNKiDl~~~~~~~~~--------~~i~~~l~~~~~~vi~~S-----Ak~g~Gv~~Ll~~l~~~ip~ 132 (547)
|.||+|+.+.+.++.+ +++.+.++. .++..+ +.++.|+.+|++.|.+.++.
T Consensus 145 v~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~---~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 145 FTRKEDLAGGSLHDYVSNTENRALRELVAECGG---RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT---CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC---eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 9999999877655433 334444443 233333 33478999999999887753
No 172
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.89 E-value=1.5e-09 Score=103.67 Aligned_cols=100 Identities=21% Similarity=0.329 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhh----cCEEEEEEECC-CCCchhhH-HHHHHHHh-------cCCcEEeeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAA----CQGALLVVDAA-QGVQAQTV-ANFYLAFE-------SELTIIPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~----aD~ailVvDa~-~g~~~qt~-~~~~~~~~-------~~lpiIvviNKiDl 85 (547)
..+.+++|||||+.+|...+..++.. +|++++|+|++ +....... .++..... .++|+++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 55788999999999999888888887 99999999998 43333332 22222211 48999999999999
Q ss_pred CCCCH-HHHHHH----HHHhcCCCCccceecccccccc
Q 008991 86 PTADP-DRVKAQ----LKSMFDLDPSEALLTSAKTGQG 118 (547)
Q Consensus 86 ~~~~~-~~~~~~----i~~~l~~~~~~vi~~SAk~g~G 118 (547)
..... ....+. +.........+++++||++|.+
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 76643 222222 2221111123689999999875
No 173
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.87 E-value=4.3e-10 Score=111.25 Aligned_cols=84 Identities=17% Similarity=0.281 Sum_probs=58.1
Q ss_pred hcCEEEEEEECCCC--CchhhHHHHH-HHH----hcCCcEEeeeecCCCCCCCHHHHHHHHHHhc-CCCCccceeccccc
Q 008991 44 ACQGALLVVDAAQG--VQAQTVANFY-LAF----ESELTIIPVINKIDQPTADPDRVKAQLKSMF-DLDPSEALLTSAKT 115 (547)
Q Consensus 44 ~aD~ailVvDa~~g--~~~qt~~~~~-~~~----~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l-~~~~~~vi~~SAk~ 115 (547)
.||++|+|+|+++. .+.+....|. .+. ..++|+++|+||+|+...+. + ++..+.. .....+++++||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--v-~~~~~~~~~~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY--I-RDAHTFALSKKNLQVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH--H-HHHHHHHHTSSSCCEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH--H-HHHHHHHHhcCCCeEEEEECCC
Confidence 69999999999986 5666544442 222 25799999999999954321 1 2333222 11234789999999
Q ss_pred cccccccHHHHHhhC
Q 008991 116 GQGLEHVLPAVIERI 130 (547)
Q Consensus 116 g~Gv~~Ll~~l~~~i 130 (547)
|.|+++++++|.+.+
T Consensus 239 g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLI 253 (255)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.86 E-value=3.7e-09 Score=99.77 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=84.5
Q ss_pred EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC-
Q 008991 15 AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD- 89 (547)
Q Consensus 15 ~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~- 89 (547)
.+++..+.+.+|||||+..|...+...+..+|++++|+|+++..+.+....|. .... .+.|+++++||+|+....
T Consensus 48 ~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~ 127 (199)
T 2f9l_A 48 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 127 (199)
T ss_dssp EETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence 45677788999999999998877778888999999999998876665544443 2222 468899999999996421
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.......+....+ ..++.+||+++.|++++++.|.+.+.
T Consensus 128 ~~~~~a~~l~~~~~---~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 128 VPTDEARAFAEKNN---LSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp SCHHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1122333433333 36788999999999999999987663
No 175
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.85 E-value=1.3e-09 Score=112.97 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCCeEE-EeCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCc----------hh-hHHHHHHHHh----
Q 008991 8 NGPGTSE-AHNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQ----------AQ-TVANFYLAFE---- 71 (547)
Q Consensus 8 ~~pG~T~-~~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~----------~q-t~~~~~~~~~---- 71 (547)
+|-|+.. .+..+++.+++|||+|+..|...|..++..++++|+|+|.++-.+ .+ ...+|.....
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3556433 223347899999999999999999999999999999999987322 11 2334443333
Q ss_pred cCCcEEeeeecCCCCC------------------CCHHHHHHHHHHhc-C------CCCccceeccccccccccccHHHH
Q 008991 72 SELTIIPVINKIDQPT------------------ADPDRVKAQLKSMF-D------LDPSEALLTSAKTGQGLEHVLPAV 126 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~------------------~~~~~~~~~i~~~l-~------~~~~~vi~~SAk~g~Gv~~Ll~~l 126 (547)
.++|+|+|+||+|+.. .+.++..+-+...+ . -....++++||++|.||.++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 3789999999999841 23333333333211 1 123467899999999999999999
Q ss_pred HhhC
Q 008991 127 IERI 130 (547)
Q Consensus 127 ~~~i 130 (547)
.+.+
T Consensus 339 ~~~i 342 (353)
T 1cip_A 339 TDVI 342 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.85 E-value=2.7e-09 Score=120.18 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=81.5
Q ss_pred eEEEEEeCCCccc---hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHhcCCcEEeeeecCCCCCCC---H---
Q 008991 21 FLLNLIDTPGHVD---FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFESELTIIPVINKIDQPTAD---P--- 90 (547)
Q Consensus 21 ~~l~liDTPGh~d---f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~~lpiIvviNKiDl~~~~---~--- 90 (547)
..++||||||+.+ ....+..++..||++|+|+|++++........|. .+...+.|+++|+||+|+.... .
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 3589999999876 4456678889999999999999988877777664 4455688999999999985432 1
Q ss_pred ---HH----HHH----HHHHhcC-----CCCccceecccc--------------ccccccccHHHHHhhCC
Q 008991 91 ---DR----VKA----QLKSMFD-----LDPSEALLTSAK--------------TGQGLEHVLPAVIERIP 131 (547)
Q Consensus 91 ---~~----~~~----~i~~~l~-----~~~~~vi~~SAk--------------~g~Gv~~Ll~~l~~~ip 131 (547)
+. +.+ .+....+ ....+++++||+ +|.|++++++.|.+.+.
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 11 111 1222222 123468999999 99999999999988764
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=1.4e-09 Score=110.46 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=97.5
Q ss_pred CCCCeEEEe--CCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCC-chhhHHHH-HHHHhcCCcEEeeeecC
Q 008991 8 NGPGTSEAH--NPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTVANF-YLAFESELTIIPVINKI 83 (547)
Q Consensus 8 ~~pG~T~~~--~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~-~~~~~~~lpiIvviNKi 83 (547)
++.|..+.. ..++ .+++||| |+.|...+..+++.+|++|+|+|+++.. +......| ..+...++|+++|+||+
T Consensus 49 pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~ 125 (301)
T 1u0l_A 49 IYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKM 125 (301)
T ss_dssp CCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred CCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHH
Confidence 456644433 2222 6889999 8999888888999999999999999865 44444444 44455789999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEe
Q 008991 84 DQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVV 163 (547)
Q Consensus 84 Dl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~ 163 (547)
|+.+.+..+..+++.+.++.. .+++++||++|.|++++++.+... ..+++ =.++.|+.++.+..
T Consensus 126 DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~ge-----------iv~l~----G~sG~GKSTll~~l 189 (301)
T 1u0l_A 126 DLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLKGK-----------ISTMA----GLSGVGKSSLLNAI 189 (301)
T ss_dssp GGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHSSS-----------EEEEE----CSTTSSHHHHHHHH
T ss_pred HcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhcCC-----------eEEEE----CCCCCcHHHHHHHh
Confidence 996532111123344444422 578999999999999999877421 22222 24567777777777
Q ss_pred cCcccc
Q 008991 164 DGTLRK 169 (547)
Q Consensus 164 ~G~lk~ 169 (547)
.|.+++
T Consensus 190 ~g~~~~ 195 (301)
T 1u0l_A 190 NPGLKL 195 (301)
T ss_dssp STTCCC
T ss_pred cccccc
Confidence 776653
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.82 E-value=5.5e-09 Score=108.84 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=77.8
Q ss_pred CCCCeEEEe-----CCCceEEEEEeCCCccc---------hHHHHHHHHhhcCEEEEEEECCCCC--chhhHHHH-HHHH
Q 008991 8 NGPGTSEAH-----NPSSFLLNLIDTPGHVD---------FSYEVSRSLAACQGALLVVDAAQGV--QAQTVANF-YLAF 70 (547)
Q Consensus 8 ~~pG~T~~~-----~~~~~~l~liDTPGh~d---------f~~~~~~~l~~aD~ailVvDa~~g~--~~qt~~~~-~~~~ 70 (547)
+.|++|++. .-.+..+.+|||||+.+ |. .+...+..+|.+++|+|++++. ..+....| ..+.
T Consensus 208 ~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~-~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~ 286 (364)
T 2qtf_A 208 TKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFF-VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILR 286 (364)
T ss_dssp ------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHH-HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHH-HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHH
Confidence 456666543 22336789999999832 32 2334577899999999998764 22222222 2222
Q ss_pred h---cCCcEEeeeecCCCCCCCHHHHHHH---HHHhcCCCCccceeccccccccccccHHHHHhhCCCCC
Q 008991 71 E---SELTIIPVINKIDQPTADPDRVKAQ---LKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPR 134 (547)
Q Consensus 71 ~---~~lpiIvviNKiDl~~~~~~~~~~~---i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~ 134 (547)
. .+.|+++|.||+|+.+.......+. +...++....+++++||++|.|++++++.|.+.++.|.
T Consensus 287 ~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 287 EIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp HHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 2 4789999999999976543322222 22333112236799999999999999999988775543
No 179
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.80 E-value=1.1e-09 Score=113.09 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=72.4
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC-CHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-DPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-~~~~~~~~i 97 (547)
.++.++||||||+.++... ....+|++++|+|+..+...+.... ...++|.++|+||+|+.+. +.....+++
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l 219 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMY 219 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHHH
Confidence 4678999999999887654 3589999999999987654443221 1125788999999999753 233334455
Q ss_pred HHhc---CCC----CccceeccccccccccccHHHHHhhCC
Q 008991 98 KSMF---DLD----PSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 98 ~~~l---~~~----~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+.+ +.. ..+++++||++|.|++++++.|.+.++
T Consensus 220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 4432 210 236899999999999999999988653
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.79 E-value=7.8e-09 Score=97.97 Aligned_cols=126 Identities=14% Similarity=0.183 Sum_probs=78.6
Q ss_pred CCCCCeEEEeCCCc--eEEEEEeCCCccc----------hHHHHHHHH---hhcCEEEEEEECCCCCchhhHHHHHHHHh
Q 008991 7 LNGPGTSEAHNPSS--FLLNLIDTPGHVD----------FSYEVSRSL---AACQGALLVVDAAQGVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~~~~~~--~~l~liDTPGh~d----------f~~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~ 71 (547)
++++|+|+....-. -.+.+|||||+.+ |...+...+ ..+|++++++|++.+...........+..
T Consensus 56 ~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 56 SKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp -------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred cCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH
Confidence 46778776432100 0467999999853 333333334 46899999999998877665555666667
Q ss_pred cCCcEEeeeecCCCCCCCH-HHHHHHHHHhcC-CC-CccceeccccccccccccHHHHHhhCCC
Q 008991 72 SELTIIPVINKIDQPTADP-DRVKAQLKSMFD-LD-PSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~~-~~~~~~i~~~l~-~~-~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.++|.+++.||+|+.+... ....+.+...+. .. ...++++||+++.|++++++.|.+.++.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8999999999999865321 111233333321 11 2357899999999999999999887643
No 181
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.78 E-value=8.7e-09 Score=98.63 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=71.4
Q ss_pred ccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEE-eccccc
Q 008991 137 INSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVV-TGMRST 215 (547)
Q Consensus 137 ~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~-~glk~~ 215 (547)
.++||++.|.++|. +.|++..|+|.+|++++||.|.+.|.+...+|++|..++ .+++++.|||.+.+. .|+ +.
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~---~~~~~A~aGd~V~l~L~gi-~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD---VETDTVAPGENLKIRLKGI-EE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSS---SCBSEECTTSEEEEEEEES-SS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECC---EEeEEECCCCEEEEEEcCC-CH
Confidence 57899999999975 689999999999999999999999999999999887654 678999999988774 343 44
Q ss_pred ccccccCcccCCCC
Q 008991 216 KEARIGDTLYHNKS 229 (547)
Q Consensus 216 ~~~~~Gdtl~~~~~ 229 (547)
.+++.||++++++.
T Consensus 77 ~di~rG~vl~~~~~ 90 (204)
T 3e1y_E 77 EEILPGFILCDPNN 90 (204)
T ss_dssp SCCCTTCEEBCSSS
T ss_pred HHCccceEEECCCC
Confidence 68999999998763
No 182
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.76 E-value=4.4e-09 Score=109.43 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCC----------Cchh-hHHHHHHHHh----
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQG----------VQAQ-TVANFYLAFE---- 71 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g----------~~~q-t~~~~~~~~~---- 71 (547)
.|-|+... +..+++.+++|||+|+..|...+..++..++++|+|+|.++- -..+ ...+|.....
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 34565431 233468999999999999999999999999999999999873 1222 2334444333
Q ss_pred cCCcEEeeeecCCCCC-------------------CCHHHHHHHHHHhc-C------CCCccceeccccccccccccHHH
Q 008991 72 SELTIIPVINKIDQPT-------------------ADPDRVKAQLKSMF-D------LDPSEALLTSAKTGQGLEHVLPA 125 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~-------------------~~~~~~~~~i~~~l-~------~~~~~vi~~SAk~g~Gv~~Ll~~ 125 (547)
.++|+|+|+||+|+.. .+.++..+-+...| . -....++++||++|.||+++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 3689999999999841 23333333222211 1 12345789999999999999999
Q ss_pred HHhhC
Q 008991 126 VIERI 130 (547)
Q Consensus 126 l~~~i 130 (547)
+.+.+
T Consensus 347 v~~~i 351 (362)
T 1zcb_A 347 VKDTI 351 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=1.7e-09 Score=113.99 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=42.2
Q ss_pred cCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHH-HHHhhCCC
Q 008991 72 SELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLP-AVIERIPP 132 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~-~l~~~ip~ 132 (547)
.++|+++|+||+|+. . ....+++.+.+.....+++++||+.+.|+.++++ .+++++|.
T Consensus 213 ~~kP~i~v~NK~D~~-~--~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~ 271 (397)
T 1wxq_A 213 VNKPMVIAANKADAA-S--DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPG 271 (397)
T ss_dssp HHSCEEEEEECGGGS-C--HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-
T ss_pred cCCCEEEEEeCcccc-c--hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCC
Confidence 358999999999986 2 2334455444421134789999999999999988 88888764
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.73 E-value=2.9e-09 Score=110.53 Aligned_cols=106 Identities=24% Similarity=0.171 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC-CHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-DPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-~~~~~~~~i 97 (547)
.++.+.||||||...- ....+..+|.+++|+|+..+...+.... ...+.|.++|+||+|+.+. ..+...+++
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~----~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK----GVLELADIVVVNKADGEHHKEARLAAREL 242 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT----TSGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH----hHhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence 4578999999996542 2334588999999999987765544321 1134689999999998643 223334455
Q ss_pred HHhc---CC---C-CccceeccccccccccccHHHHHhhCC
Q 008991 98 KSMF---DL---D-PSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 98 ~~~l---~~---~-~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.+.+ +. . ..+++++||++|.|+++++++|.+.++
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5443 10 0 247999999999999999999998764
No 185
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.70 E-value=3.2e-09 Score=110.08 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=75.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECC----------CCCchhh-HHHHHHHHh----cCCcEEeeeecC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAA----------QGVQAQT-VANFYLAFE----SELTIIPVINKI 83 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~----------~g~~~qt-~~~~~~~~~----~~lpiIvviNKi 83 (547)
+.+.+++|||+|+..|...+..+++.++++|+|+|.+ +....+. ..+|..... .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999987 2222222 333433332 368999999999
Q ss_pred CCCCC-----C-------------------HHHHHHHHHHhc------C------CCCccceeccccccccccccHHHHH
Q 008991 84 DQPTA-----D-------------------PDRVKAQLKSMF------D------LDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 84 Dl~~~-----~-------------------~~~~~~~i~~~l------~------~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
|+... . .++..+-+.+.+ + .....++++||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97321 0 112111112221 1 1122468999999999999999988
Q ss_pred hhC
Q 008991 128 ERI 130 (547)
Q Consensus 128 ~~i 130 (547)
+.+
T Consensus 341 ~~I 343 (354)
T 2xtz_A 341 ETL 343 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.69 E-value=1.8e-08 Score=94.63 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=82.3
Q ss_pred eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHH-HHHh---cCCcEEeeeecCCCCCCC--
Q 008991 16 HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFY-LAFE---SELTIIPVINKIDQPTAD-- 89 (547)
Q Consensus 16 ~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~---~~lpiIvviNKiDl~~~~-- 89 (547)
+++..+.+++|||||+.+|...+...+..++++++|+|.++..+.+....|. .... .+.|+++++||+|+.+..
T Consensus 73 ~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~ 152 (191)
T 1oix_A 73 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 152 (191)
T ss_dssp ETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS
T ss_pred ECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc
Confidence 4667788889999999998888888888999999999998765555544332 2222 368899999999986421
Q ss_pred HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
.......+....+ ..++.+||+++.|++++++.|.+.+
T Consensus 153 ~~~~a~~l~~~~~---~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 153 PTDEARAFAEKNG---LSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CHHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 1222334443333 3678899999999999999997653
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.64 E-value=2.7e-08 Score=103.03 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=72.9
Q ss_pred ceEEEEEeCCCcc-------------chHHHHHHHHhhcC-EEEEEEECCCCCchhhH-HHHHHHHhcCCcEEeeeecCC
Q 008991 20 SFLLNLIDTPGHV-------------DFSYEVSRSLAACQ-GALLVVDAAQGVQAQTV-ANFYLAFESELTIIPVINKID 84 (547)
Q Consensus 20 ~~~l~liDTPGh~-------------df~~~~~~~l~~aD-~ailVvDa~~g~~~qt~-~~~~~~~~~~lpiIvviNKiD 84 (547)
...++||||||.. .+...+..++..++ .+++|+|++.+...+.. ..+..+...+.|+++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 4679999999974 34455666676655 45557778776665554 355555567899999999999
Q ss_pred CCCCCHHHHHHHHHHh-cC--CCCccceeccccccccccccHHHHHh
Q 008991 85 QPTADPDRVKAQLKSM-FD--LDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 85 l~~~~~~~~~~~i~~~-l~--~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
+.+...+ ..+.+... +. ....+++++||++|.|++++++++.+
T Consensus 209 l~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9654221 11222211 11 12246899999999999999999976
No 188
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.63 E-value=3e-08 Score=97.51 Aligned_cols=110 Identities=23% Similarity=0.239 Sum_probs=72.4
Q ss_pred ceEEEEEeCCCccchHHH------HHHHHhhcCEEEEEEECCCCCchhhHH-HH----HHHHhcCCcEEeeeecCCCCCC
Q 008991 20 SFLLNLIDTPGHVDFSYE------VSRSLAACQGALLVVDAAQGVQAQTVA-NF----YLAFESELTIIPVINKIDQPTA 88 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~------~~~~l~~aD~ailVvDa~~g~~~qt~~-~~----~~~~~~~lpiIvviNKiDl~~~ 88 (547)
++.+.||||||+.++... +..+++. +.+++++|+.......... .+ ......++|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 468899999999876432 2234555 8888999987665554422 11 2223457999999999998653
Q ss_pred CH-HHHHHH----------H-----------------HHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 89 DP-DRVKAQ----------L-----------------KSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 89 ~~-~~~~~~----------i-----------------~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.. ++..+. + .+.++. ..+++++||++|.|+++++++|.+.++
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP-PVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC-CCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC-cccceEEEecCcccHHHHHHHHHHHhc
Confidence 21 111111 1 012221 237899999999999999999987653
No 189
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.62 E-value=2.8e-08 Score=103.32 Aligned_cols=115 Identities=20% Similarity=0.253 Sum_probs=57.7
Q ss_pred CCceEEEEEeCCCccchH-------HHHH-------HHHhhc-------------CEEEEEEEC-CCCCchhhHHHHHHH
Q 008991 18 PSSFLLNLIDTPGHVDFS-------YEVS-------RSLAAC-------------QGALLVVDA-AQGVQAQTVANFYLA 69 (547)
Q Consensus 18 ~~~~~l~liDTPGh~df~-------~~~~-------~~l~~a-------------D~ailVvDa-~~g~~~qt~~~~~~~ 69 (547)
+....+++|||||+.|+. ..+. .++..+ |+++++|+. ..+.......++..+
T Consensus 92 ~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 92 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred CcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 334689999999995432 2222 445443 457777775 455555444444433
Q ss_pred HhcCCcEEeeeecCCCCCCCH-HHHHHHHHHhcCCCCccceecccccccccccc----HHHHHhhCCCCC
Q 008991 70 FESELTIIPVINKIDQPTADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV----LPAVIERIPPPR 134 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L----l~~l~~~ip~p~ 134 (547)
..++|+|+|+||+|+...+. ....+++.+.......+++++||++|.| ++. ++.|.+.+|.+.
T Consensus 172 -~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 172 -HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp -CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred -ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence 46799999999999965321 2222455555544445899999999988 554 455555666543
No 190
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.60 E-value=3.3e-08 Score=101.61 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=87.0
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCC----------CCchh-hHHHHHHHHh----
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQ----------GVQAQ-TVANFYLAFE---- 71 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~----------g~~~q-t~~~~~~~~~---- 71 (547)
+|-|+... ++.+++.+++|||+|+..|...|..+++.++++|+|+|.++ ....+ ...+|.....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 45665443 34567899999999999999999999999999999999972 21221 2344444333
Q ss_pred cCCcEEeeeecCCCCC------------------CCHHHHHHHHHHhc---------CC--------------CCcccee
Q 008991 72 SELTIIPVINKIDQPT------------------ADPDRVKAQLKSMF---------DL--------------DPSEALL 110 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~------------------~~~~~~~~~i~~~l---------~~--------------~~~~vi~ 110 (547)
.++|+++++||+|+.. .+.++..+-+.+.+ .. ....+.+
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 4789999999999843 13344444454444 00 1234678
Q ss_pred ccccccccccccHHHHHhhC
Q 008991 111 TSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 111 ~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+||+++.||+.+|+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.7e-08 Score=92.82 Aligned_cols=89 Identities=26% Similarity=0.393 Sum_probs=57.1
Q ss_pred CCCeEEEeCCCceEEEEEeCCCccchHHHHHHHHhh----cCEEEEEEECC-CCCchhhH-HHHHHHHh-------cCCc
Q 008991 9 GPGTSEAHNPSSFLLNLIDTPGHVDFSYEVSRSLAA----CQGALLVVDAA-QGVQAQTV-ANFYLAFE-------SELT 75 (547)
Q Consensus 9 ~pG~T~~~~~~~~~l~liDTPGh~df~~~~~~~l~~----aD~ailVvDa~-~g~~~qt~-~~~~~~~~-------~~lp 75 (547)
.|+++.++ ..+.+++|||||+.+|...+..++.. +|++++|+|++ +..+.... .++..... .++|
T Consensus 81 ~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 81 EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp ------CC--CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CCceeeee--cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC
Confidence 45555544 45678899999999987777777766 89999999998 43333222 22222211 3899
Q ss_pred EEeeeecCCCCCC-CHHHHHHHHHH
Q 008991 76 IIPVINKIDQPTA-DPDRVKAQLKS 99 (547)
Q Consensus 76 iIvviNKiDl~~~-~~~~~~~~i~~ 99 (547)
+++|+||+|+.+. ..++..+.+.+
T Consensus 159 ~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 159 ILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred EEEEEEchHhcCCCCHHHHHHHHHH
Confidence 9999999999764 34555555543
No 192
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.59 E-value=2.3e-08 Score=102.46 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=85.3
Q ss_pred CCCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECC-------CCCchh----hHHHHHHHHh----
Q 008991 8 NGPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAA-------QGVQAQ----TVANFYLAFE---- 71 (547)
Q Consensus 8 ~~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~-------~g~~~q----t~~~~~~~~~---- 71 (547)
+|-|+... ++.+++.+++|||+|+..|...|..+++.++++|+|+|.+ +..... ...+|.....
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 46675432 3446789999999999999999999999999999999775 222222 2334443332
Q ss_pred cCCcEEeeeecCCCCC-------------------CCHHHHHHHHHHhc-CC-----CCccceeccccccccccccHHHH
Q 008991 72 SELTIIPVINKIDQPT-------------------ADPDRVKAQLKSMF-DL-----DPSEALLTSAKTGQGLEHVLPAV 126 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~-------------------~~~~~~~~~i~~~l-~~-----~~~~vi~~SAk~g~Gv~~Ll~~l 126 (547)
.++|+++++||+|+.. .+.++..+-+.+.| .+ ....+.++||+++.||+.+|+++
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 3689999999999843 23333333333322 11 12246789999999999999999
Q ss_pred HhhC
Q 008991 127 IERI 130 (547)
Q Consensus 127 ~~~i 130 (547)
.+.+
T Consensus 313 ~~~I 316 (327)
T 3ohm_A 313 KDTI 316 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 193
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.58 E-value=2.7e-08 Score=104.59 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=81.7
Q ss_pred CCCeEEE-eCCCceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCC----------CCchhh-HHHHHHHHh----c
Q 008991 9 GPGTSEA-HNPSSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQ----------GVQAQT-VANFYLAFE----S 72 (547)
Q Consensus 9 ~pG~T~~-~~~~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~----------g~~~qt-~~~~~~~~~----~ 72 (547)
|-|+... +..+++.+++|||+|+..|...+..++..++++|+|+|.++ ....+. ..+|..... .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4455431 22245899999999999999999999999999999999987 333333 334443333 3
Q ss_pred CCcEEeeeecCCCCCCC---------------------------------HHHHHHHH----HHhc-----CCCCcccee
Q 008991 73 ELTIIPVINKIDQPTAD---------------------------------PDRVKAQL----KSMF-----DLDPSEALL 110 (547)
Q Consensus 73 ~lpiIvviNKiDl~~~~---------------------------------~~~~~~~i----~~~l-----~~~~~~vi~ 110 (547)
++|+++|+||+|+.... .+...+-+ .+.. +.....+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 68999999999973211 11111111 1111 111234678
Q ss_pred ccccccccccccHHHHHhhC
Q 008991 111 TSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 111 ~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+||+++.||+++|+++.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHH
Confidence 99999999999999987654
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.51 E-value=1.2e-07 Score=106.84 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=76.8
Q ss_pred eEEEEEeCCCccc-------------hHHHHHHHH-hhcCEEEEEEECCCCCchhhH-HHHHHHHhcCCcEEeeeecCCC
Q 008991 21 FLLNLIDTPGHVD-------------FSYEVSRSL-AACQGALLVVDAAQGVQAQTV-ANFYLAFESELTIIPVINKIDQ 85 (547)
Q Consensus 21 ~~l~liDTPGh~d-------------f~~~~~~~l-~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~~lpiIvviNKiDl 85 (547)
..+.|+||||... +...+..++ ..+|.+++|+|++.+...+.. ..+..+...+.|+|+|+||+|+
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDl 229 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 229 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTS
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCccc
Confidence 4578999999754 333444455 368999999999998877765 6667777778999999999999
Q ss_pred CCCCHHHHHHHHHH--hcC--CCCccceeccccccccccccHHHHHh
Q 008991 86 PTADPDRVKAQLKS--MFD--LDPSEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 86 ~~~~~~~~~~~i~~--~l~--~~~~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
....... ..+.. .+. ....+++++||++|.|+++|++++.+
T Consensus 230 v~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 230 MDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 6542210 11111 111 23357899999999999999999986
No 195
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.47 E-value=2.6e-07 Score=89.90 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCccc-----------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHH-----hcCCcEEeeeec
Q 008991 19 SSFLLNLIDTPGHVD-----------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAF-----ESELTIIPVINK 82 (547)
Q Consensus 19 ~~~~l~liDTPGh~d-----------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~lpiIvviNK 82 (547)
.+..++||||||+.+ +...+..+...+|++|+|+|++.... ....++.... ....|+++|+||
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 457899999999754 23333333445799999999975433 3333333322 234699999999
Q ss_pred CCCCCCC-HH-------HHHHHHHHhcCCCCccceecccc-----ccccccccHHHHHhhC
Q 008991 83 IDQPTAD-PD-------RVKAQLKSMFDLDPSEALLTSAK-----TGQGLEHVLPAVIERI 130 (547)
Q Consensus 83 iDl~~~~-~~-------~~~~~i~~~l~~~~~~vi~~SAk-----~g~Gv~~Ll~~l~~~i 130 (547)
+|+.... .+ +..+++.+.++. .++.+++. ++.|+.+|++.+...+
T Consensus 155 ~D~~~~~~~~~~i~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 155 KDDLGDTNLHDYLREAPEDIQDLMDIFGD---RYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp GGGC------------CHHHHHHHHHHSS---SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcccHHHHHHhchHHHHHHHHHcCC---EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 9986532 22 123444455553 33444443 4579999999887765
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.47 E-value=1.5e-07 Score=103.13 Aligned_cols=224 Identities=16% Similarity=0.119 Sum_probs=120.7
Q ss_pred EEEEEeCCCccc-----------hHHHHHHHHhhcCEEEEEEECCC-CCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC
Q 008991 22 LLNLIDTPGHVD-----------FSYEVSRSLAACQGALLVVDAAQ-GVQAQTVANFYLAFESELTIIPVINKIDQPTAD 89 (547)
Q Consensus 22 ~l~liDTPGh~d-----------f~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~ 89 (547)
.++||||||+.+ |...+..++..+|++++|+|+++ +...++..++..+...+.|+++|+||+|+...+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 589999999986 77888889999999999999988 577777888877777789999999999986421
Q ss_pred -HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCCCCccccCceeEEEEe-------eeccccccEEEEEE
Q 008991 90 -PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPPPRGIINSSLRMLLLD-------SYYDEYKGVICHVA 161 (547)
Q Consensus 90 -~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~-------~~~d~~~G~v~~~r 161 (547)
..+..+.+. .|+....++.++++......+.|....+.+.+.+..+ ..--||.-.+ +
T Consensus 235 el~~~~~~l~------------~s~~~i~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~E~e~l~~~l~elP~~~~v---~ 299 (550)
T 2qpt_A 235 QLMRVYGALM------------WALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAAL---R 299 (550)
T ss_dssp HHHHHHHHHH------------HHHHHHHCCSSCCCEEESCCSSSCCSSCTTHHHHHHHHHHHHHHHHTTGGGHHH---H
T ss_pred HHHHHHHHhh------------cchhheeechHhhhhccccCCCCcccCCCCHHHHHHHHHHHHHHhhhccHHHHH---H
Confidence 122222221 2223333333333322222222111111111111100 0000110000 0
Q ss_pred Ee------cCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccccccccCcccCCC----CCC
Q 008991 162 VV------DGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIGDTLYHNK----SIV 231 (547)
Q Consensus 162 V~------~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~Gdtl~~~~----~~~ 231 (547)
+. .+.++....|++...+ +..++-++......+.+ ++..+..++++...+..||+..... ...
T Consensus 300 ~i~~~~~~~~~~~I~a~I~v~~~s------qk~i~iGk~g~~~~li~-~l~~~~~~i~~~~~~~~~d~p~~~~~~~~~~~ 372 (550)
T 2qpt_A 300 KLNDLVKRARLVRVHAYIISYLKK------EMPTVFGKENKKKQLIL-KLPVIFAKIQLEHHISPGDFPDCQKMQELLMA 372 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HSCSSSCHHHHHHHHHH-THHHHHHHHHHTTCCCTTTCCCHHHHHHHHHH
T ss_pred HHHHHhccCCeEEEEEEEEEeecc------cceeEECCchHHHHHHH-hHHHHHHHHHHHhCCCccccCCHHHHHhhhhh
Confidence 00 1222222222221111 11112222111122222 2233334566667888899865431 112
Q ss_pred CCCCCCCCCcceEEeeeccCCCCchhHHHHHHHhhh
Q 008991 232 EPLPGFKPAKHMVFSGLYPADGSDFEVLNHAIERLT 267 (547)
Q Consensus 232 ~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~ 267 (547)
.++..|+..+|-++.++.+.-..|+.+|..+|.+-.
T Consensus 373 ~~~~~f~~l~~~~~~~l~~~~~~d~~~l~~~~~~~~ 408 (550)
T 2qpt_A 373 HDFTKFHSLKPKLLEALDDMLAQDIAKLMPLLRQEE 408 (550)
T ss_dssp SCGGGSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhccccCHHHHHHHHhhhHhhHHHHHHhccccc
Confidence 466777777888888888888889999999998764
No 197
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=2.8e-07 Score=92.49 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=71.2
Q ss_pred EEeCCCcc-chHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCC
Q 008991 25 LIDTPGHV-DFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDL 103 (547)
Q Consensus 25 liDTPGh~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~ 103 (547)
+-+-|||. ....++...+..+|+++.|+||.++........-... .+.|.++|+||+|+.. .+ ..+.+.+.+.-
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~~-~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--AA-VTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--HH-HHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--HH-HHHHHHHHHHh
Confidence 44679997 5778899999999999999999988776543322222 5799999999999965 22 23333343321
Q ss_pred CCccceeccccccccccccHHHHHhhCC
Q 008991 104 DPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 104 ~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
...+++++||++|.|+.+|++.+.+.++
T Consensus 78 ~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 1237899999999999999998877664
No 198
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.46 E-value=3.8e-08 Score=99.83 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCceEEEEEe-CCC-----ccchHHHHHHHHhhcCEEEEEEECCCCC-chhhH-HHHHHHHhcCCcEEeeeecCCCCCC
Q 008991 17 NPSSFLLNLID-TPG-----HVDFSYEVSRSLAACQGALLVVDAAQGV-QAQTV-ANFYLAFESELTIIPVINKIDQPTA 88 (547)
Q Consensus 17 ~~~~~~l~liD-TPG-----h~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~-~~~~~~~~~~lpiIvviNKiDl~~~ 88 (547)
.|..+.+..+| +-| |+.|......+++.+|++++|+|+++.. +.+.. .++..+...++|+++|+||+|+.+.
T Consensus 46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 34556676666 444 4555555556789999999999999764 55543 3444556689999999999999653
Q ss_pred CHHHHHHHHHHhcCCCCccceeccccccccccccHHHHH
Q 008991 89 DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVI 127 (547)
Q Consensus 89 ~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~ 127 (547)
+.....+++.+.+.....+++++||++|.|+++|++.+.
T Consensus 126 ~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 126 EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 210112233222211123789999999999999988764
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.45 E-value=4.4e-08 Score=93.71 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=71.3
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC---CCHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT---ADPDRVKA 95 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~---~~~~~~~~ 95 (547)
.++.+.+|||||+.+.... .-..++.+++|+|++.+... .|......+.|.++|+||+|+.+ .+.++..+
T Consensus 107 ~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 179 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKMKA 179 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHHHH
Confidence 3467889999995221100 00246889999999887432 22333345789999999999853 24555555
Q ss_pred HHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 96 QLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 96 ~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+.+. + ...+++++||++|.|+++++++|.+.+..
T Consensus 180 ~~~~~-~-~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 180 DAKLI-N-PRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHH-C-TTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHh-C-CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 55543 2 23478999999999999999999887643
No 200
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.45 E-value=2.8e-07 Score=87.82 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=67.9
Q ss_pred CccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH----HHH-Hh---cCCcEEeeeecC-CCCCCCHHHHHHHHHHh
Q 008991 30 GHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF----YLA-FE---SELTIIPVINKI-DQPTADPDRVKAQLKSM 100 (547)
Q Consensus 30 Gh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~----~~~-~~---~~lpiIvviNKi-Dl~~~~~~~~~~~i~~~ 100 (547)
|+..+...|..++..+|++|+|||+++........-+ .++ .. .++|++|+.||. |++++-.. .++.+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~---~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH---HHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH---HHHHHH
Confidence 7788888999999999999999999876433333322 112 11 478999999995 78766321 233344
Q ss_pred cCC----CCccceeccccccccccccHHHHHhhCCC
Q 008991 101 FDL----DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 101 l~~----~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
+++ .++.+..|||++|+|+.+-++||.+.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 433 35568999999999999999999987743
No 201
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.37 E-value=3.9e-07 Score=94.47 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=70.7
Q ss_pred ceEEEEEeCCCccch-------------HHHHHHHHhhcCEEEEEEECCCCC-chhh-HHHHHHHHhcCCcEEeeeecCC
Q 008991 20 SFLLNLIDTPGHVDF-------------SYEVSRSLAACQGALLVVDAAQGV-QAQT-VANFYLAFESELTIIPVINKID 84 (547)
Q Consensus 20 ~~~l~liDTPGh~df-------------~~~~~~~l~~aD~ailVvDa~~g~-~~qt-~~~~~~~~~~~lpiIvviNKiD 84 (547)
...++||||||..++ ...+..++..+|++|+|+|+.... ..+. ...+..+...+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 456899999999887 667778899999999999875432 2121 3333444445789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHH
Q 008991 85 QPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAV 126 (547)
Q Consensus 85 l~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l 126 (547)
+...... ..+.+.........+++++|+.++.|+++.++..
T Consensus 215 l~~~~~~-~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 215 LMDKGTD-AVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GCCTTCC-SHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred cCCCccc-HHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 8643211 1222222111112468999999999998766543
No 202
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.36 E-value=1.7e-06 Score=85.92 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=54.0
Q ss_pred CCCCCeEE-----EeCCCceEEEEEeCCCccchH---HHHHHHH------hhcCEEEEEEECCC-CCchhhHHHHHHHHh
Q 008991 7 LNGPGTSE-----AHNPSSFLLNLIDTPGHVDFS---YEVSRSL------AACQGALLVVDAAQ-GVQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~-----~~~~~~~~l~liDTPGh~df~---~~~~~~l------~~aD~ailVvDa~~-g~~~qt~~~~~~~~~ 71 (547)
++++|+|+ ..+..++.++||||||+.+|. ......+ ..+|++++|+|++. ........++..+..
T Consensus 68 ~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~ 147 (270)
T 1h65_A 68 SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITD 147 (270)
T ss_dssp CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 45667664 234567889999999998764 2222222 26999999988865 333334455544433
Q ss_pred c-C----CcEEeeeecCCCCCC
Q 008991 72 S-E----LTIIPVINKIDQPTA 88 (547)
Q Consensus 72 ~-~----lpiIvviNKiDl~~~ 88 (547)
. + .|+++|+||+|+...
T Consensus 148 ~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 148 SFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHCGGGGGGEEEEEECCSCCCG
T ss_pred HhCcccccCEEEEEECcccCCc
Confidence 2 3 689999999998643
No 203
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.34 E-value=1.5e-06 Score=91.92 Aligned_cols=109 Identities=23% Similarity=0.233 Sum_probs=74.7
Q ss_pred ceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH-HHHH-----hcCCcEEeeeecCCCC
Q 008991 20 SFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANF-YLAF-----ESELTIIPVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~-----~~~lpiIvviNKiDl~ 86 (547)
...+.++||||+.+ +.....+.+..||.++.++|++ .........+ .... -.+.|.++++||+|+.
T Consensus 204 ~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 204 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 36789999999854 2234455567899999999997 2222222222 1111 1368999999999997
Q ss_pred CCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCCC
Q 008991 87 TADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.. ...+++.+.+.-...+++.+||+++.|+++|+++|.+.+..
T Consensus 283 ~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 283 EE---EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp CH---HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hH---HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 54 33444444442223478999999999999999999987754
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.34 E-value=2e-07 Score=96.40 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC-HHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD-PDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~-~~~~~~~i 97 (547)
.++.+.|+||||..+.. ......+|.+++|+|+..+...+.... .-...|.++|+||+|+.+.. .....+++
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~----~il~~~~ivVlNK~Dl~~~~~~~~~~~~l 237 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR----GIIEMADLVAVTKSDGDLIVPARRIQAEY 237 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH----HHHhcCCEEEEeeecCCCchhHHHHHHHH
Confidence 45778999999975322 234578999999999987643332211 12457889999999985321 11223344
Q ss_pred HHhcCC-------CCccceeccccccccccccHHHHHhhCC
Q 008991 98 KSMFDL-------DPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 98 ~~~l~~-------~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
...+.. ...+++++||++|.|+++|+++|.+.++
T Consensus 238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 332211 0236899999999999999999987653
No 205
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.28 E-value=6e-07 Score=88.79 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCCCCeEEE-----eCCCceEEEEEeCCCccchHHHHHHHH---h------hcCEEEEEEECCCC-CchhhHHHHHHHHh
Q 008991 7 LNGPGTSEA-----HNPSSFLLNLIDTPGHVDFSYEVSRSL---A------ACQGALLVVDAAQG-VQAQTVANFYLAFE 71 (547)
Q Consensus 7 s~~pG~T~~-----~~~~~~~l~liDTPGh~df~~~~~~~l---~------~aD~ailVvDa~~g-~~~qt~~~~~~~~~ 71 (547)
++++++|.. ....+..++|||||||.+|......++ . .+|++++|+|.+.. .......++..+..
T Consensus 65 ~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~ 144 (262)
T 3def_A 65 SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQ 144 (262)
T ss_dssp CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 345565542 234567999999999988754332222 2 68999999887653 33333444444433
Q ss_pred c-C----CcEEeeeecCCCC
Q 008991 72 S-E----LTIIPVINKIDQP 86 (547)
Q Consensus 72 ~-~----lpiIvviNKiDl~ 86 (547)
. + .|+++|+||+|+.
T Consensus 145 ~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 145 TFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHCGGGGGGEEEEEECTTCC
T ss_pred HhchhhhcCEEEEEeCcccC
Confidence 2 2 4899999999985
No 206
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.23 E-value=1.8e-06 Score=86.12 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHH----HHH---H-hcCCcEEeeeec-CCCCCCCHHHHHHHHHH
Q 008991 29 PGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANF----YLA---F-ESELTIIPVINK-IDQPTADPDRVKAQLKS 99 (547)
Q Consensus 29 PGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~----~~~---~-~~~lpiIvviNK-iDl~~~~~~~~~~~i~~ 99 (547)
.|+..+...|..++..+|++|+|||+++.......+-+ .++ . ..+.|++|+.|| -|++++-.. .++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHHH
Confidence 47788899999999999999999999876533332211 111 2 258999999997 588876431 33444
Q ss_pred hcCC----CCccceeccccccccccccHHHHHhhCCC
Q 008991 100 MFDL----DPSEALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 100 ~l~~----~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
.+++ .+..+..|||++|+|+.+-+++|.+.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 4433 34568999999999999999999988753
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.15 E-value=2.1e-06 Score=89.45 Aligned_cols=99 Identities=20% Similarity=0.126 Sum_probs=68.6
Q ss_pred CccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC--HHHHHHH---HHHhcCCC
Q 008991 30 GHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD--PDRVKAQ---LKSMFDLD 104 (547)
Q Consensus 30 Gh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~--~~~~~~~---i~~~l~~~ 104 (547)
..++|...+....+.+|++++|+|+++............ ..+.|+++|+||+|+...+ .+...+. ..+..++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 357798888888889999999999987321110111111 1378999999999996543 2233222 23345665
Q ss_pred CccceeccccccccccccHHHHHhhC
Q 008991 105 PSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 105 ~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+.+++.+||++|.|+++|++.|.+..
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 55789999999999999999997754
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.13 E-value=3.2e-06 Score=88.05 Aligned_cols=103 Identities=19% Similarity=0.102 Sum_probs=70.5
Q ss_pred EEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCC--HHHHHHHH---HH
Q 008991 25 LIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTAD--PDRVKAQL---KS 99 (547)
Q Consensus 25 liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~--~~~~~~~i---~~ 99 (547)
-+|+| +++|...+......++++++|+|+++............+ .+.|+++|+||+|+...+ .+...+.+ .+
T Consensus 53 ~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 53 DVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp -------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 34444 788999888888999999999999986532221221111 378999999999996543 23333333 23
Q ss_pred hcCCCCccceeccccccccccccHHHHHhhC
Q 008991 100 MFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 100 ~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
..|..+.+++.+||++|.|+++|++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3465555789999999999999999997765
No 209
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.03 E-value=1.4e-06 Score=86.44 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCccch-HHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCcc
Q 008991 29 PGHVDF-SYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSE 107 (547)
Q Consensus 29 PGh~df-~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~ 107 (547)
|||... ..++...++.+|.++.|+||.++........- ++ ++|.++|+||+|+... +. .+.+.+.+.-...+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~--~~-~~~~~~~~~~~g~~ 77 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADE--KT-TKKWVEFFKKQGKR 77 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCH--HH-HHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCH--HH-HHHHHHHHHHcCCe
Confidence 899754 45888999999999999999987665432111 12 8999999999999652 22 22333333111225
Q ss_pred ceeccccccccccccHHHHHhhC
Q 008991 108 ALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 108 vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+ .+||++|.|+++|++.+.+.+
T Consensus 78 v-~iSa~~~~gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 78 V-ITTHKGEPRKVLLKKLSFDRL 99 (262)
T ss_dssp E-EECCTTSCHHHHHHHHCCCTT
T ss_pred E-EEECCCCcCHHHHHHHHHHhh
Confidence 6 999999999999988875543
No 210
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.01 E-value=4.5e-06 Score=84.46 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCceEEEEEeCCCc-------cchHHHHH-------HHHhhc-------------CEEEEEEECCC-CCchhhHHHHHHH
Q 008991 18 PSSFLLNLIDTPGH-------VDFSYEVS-------RSLAAC-------------QGALLVVDAAQ-GVQAQTVANFYLA 69 (547)
Q Consensus 18 ~~~~~l~liDTPGh-------~df~~~~~-------~~l~~a-------------D~ailVvDa~~-g~~~qt~~~~~~~ 69 (547)
+....+++|||||+ ..|...+. .++..+ +.++++++.+. +......+.+..+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l 152 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 152 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH
Confidence 44568999999998 33433332 344333 33555555544 4666655444433
Q ss_pred HhcCCcEEeeeecCCCCCCCH-HHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 70 FESELTIIPVINKIDQPTADP-DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 70 ~~~~lpiIvviNKiDl~~~~~-~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..+.++++|+||.|+...+. ....+++.+.......+++++||++| |++++++.+.+.+.
T Consensus 153 -~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 153 -HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp -TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred -HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 24678999999999865321 11123333322111247899999999 99999999987763
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.99 E-value=9.6e-06 Score=87.62 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=69.9
Q ss_pred CceEEEEEeCCCccc----hHHHHHHHH--hhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVD----FSYEVSRSL--AACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~d----f~~~~~~~l--~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~~~~~~ 91 (547)
.++.+.||||||... +..++.... ..+|.+++|+|+..+.. ....+....+ .+|+ ++|+||+|.... ..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~~-~g 257 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHAK-GG 257 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCCC-CT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCccccc-hH
Confidence 467899999999863 444443332 26899999999998754 2222222222 2774 899999998643 22
Q ss_pred HHHHHHHHhcCCC---------------Cccceecccccccc-ccccHHHHHhh
Q 008991 92 RVKAQLKSMFDLD---------------PSEALLTSAKTGQG-LEHVLPAVIER 129 (547)
Q Consensus 92 ~~~~~i~~~l~~~---------------~~~vi~~SAk~g~G-v~~Ll~~l~~~ 129 (547)
...+ +...++.+ ..+..++|+..|.| +.+|++++.+.
T Consensus 258 ~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 GALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2222 33333322 22457799999999 99999999776
No 212
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=1.3e-05 Score=84.69 Aligned_cols=111 Identities=21% Similarity=0.323 Sum_probs=50.2
Q ss_pred ceEEEEEeCCCccchHH------HH--------HHHH-----------hh--cCEEEEEEECC-CCCchhhHHHHHHHHh
Q 008991 20 SFLLNLIDTPGHVDFSY------EV--------SRSL-----------AA--CQGALLVVDAA-QGVQAQTVANFYLAFE 71 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~------~~--------~~~l-----------~~--aD~ailVvDa~-~g~~~qt~~~~~~~~~ 71 (547)
...+++|||||..++.. .+ ..++ .. +++++++++.+ .+.......++..+.
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~- 165 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH- 165 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-
Confidence 34789999999976531 11 1111 12 44566666665 577776666665554
Q ss_pred cCCcEEeeeecCCCCCCC-HHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 72 SELTIIPVINKIDQPTAD-PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 72 ~~lpiIvviNKiDl~~~~-~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
.++|+|+|+||+|+...+ .....+++.+.+.....+++.+||+++.++++++..+.+.+|
T Consensus 166 ~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 166 EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 489999999999986422 111122333322212346799999999999998888877665
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.76 E-value=3.5e-05 Score=80.16 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=54.8
Q ss_pred CCCCCeEEEe-----CCCceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh---
Q 008991 7 LNGPGTSEAH-----NPSSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE--- 71 (547)
Q Consensus 7 s~~pG~T~~~-----~~~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--- 71 (547)
+|+|+||++. ...+..+.|+||||..+ ....+...++.||.+++|+|++++.... ......+..
T Consensus 100 ~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~-~~i~~EL~~~~~ 178 (376)
T 4a9a_A 100 AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHK-QIIEKELEGVGI 178 (376)
T ss_dssp GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHH-HHHHHHHHHTTE
T ss_pred cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHH-HHHHHHHHHhhH
Confidence 5789999865 23567899999999864 2345667788999999999998753221 111112222
Q ss_pred --cCCcEEeeeecCCCC
Q 008991 72 --SELTIIPVINKIDQP 86 (547)
Q Consensus 72 --~~lpiIvviNKiDl~ 86 (547)
...|.++++||+|..
T Consensus 179 ~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 179 RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EETCCCCCEEEEECSSS
T ss_pred hhccCChhhhhhHhhhh
Confidence 246788999999964
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.67 E-value=4.7e-05 Score=78.21 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCH--HHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADP--DRVKAQ 96 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~--~~~~~~ 96 (547)
.++.+.|+||||..+-.. .....+|.+++|+|+..+...+.... .. ..++.++++||+|+..... ....++
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~--~i--~~~~~ivvlNK~Dl~~~~~~s~~~~~~ 218 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK--GI--FELADMIAVNKADDGDGERRASAAASE 218 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT--TH--HHHCSEEEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHH--HH--hccccEEEEEchhccCchhHHHHHHHH
Confidence 467889999999865322 23468999999999865532211100 00 1246678889999743211 112333
Q ss_pred HHHhcCC-C------CccceeccccccccccccHHHHHhhCC
Q 008991 97 LKSMFDL-D------PSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 97 i~~~l~~-~------~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
+...+.+ . ..+++++||++|.|+++|++.|.+..+
T Consensus 219 l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 219 YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4332211 1 236899999999999999999987653
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.65 E-value=4.3e-05 Score=79.10 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=29.9
Q ss_pred eEEEEEeCCCccchHH-------HHHHHHhhcCEEEEEEECCC
Q 008991 21 FLLNLIDTPGHVDFSY-------EVSRSLAACQGALLVVDAAQ 56 (547)
Q Consensus 21 ~~l~liDTPGh~df~~-------~~~~~l~~aD~ailVvDa~~ 56 (547)
..++||||||+.++.. .....++.||++++|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999988753 24456889999999999986
No 216
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.58 E-value=3.9e-05 Score=77.70 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=72.2
Q ss_pred HHHhhcCEEEEEEECCCCCchhh--HHHHHHHHhcCCcEEeeeecCCCCCCCHH-HHHHHHHHhcCCCCccceecccccc
Q 008991 40 RSLAACQGALLVVDAAQGVQAQT--VANFYLAFESELTIIPVINKIDQPTADPD-RVKAQLKSMFDLDPSEALLTSAKTG 116 (547)
Q Consensus 40 ~~l~~aD~ailVvDa~~g~~~qt--~~~~~~~~~~~lpiIvviNKiDl~~~~~~-~~~~~i~~~l~~~~~~vi~~SAk~g 116 (547)
..++.+|.+++|+|+.++..... ...+..+...++|.++|+||+|+...... +..+++.+.+.-...+++.+||++|
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46788999999999987654333 23344456689999999999999764220 1234444443111137899999999
Q ss_pred ccccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccc
Q 008991 117 QGLEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLR 168 (547)
Q Consensus 117 ~Gv~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk 168 (547)
.|+++|++... +...+++ =.++.|+.++++...|.++
T Consensus 162 ~g~~~L~~~~~-----------G~~~~lv----G~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 162 DSLADIIPHFQ-----------DKTTVFA----GQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTCTTTGGGGT-----------TSEEEEE----ESHHHHHHHHHHHHCC---
T ss_pred CCHHHHHhhcC-----------CCEEEEE----CCCCCCHHHHHHHhccccc
Confidence 99999887541 1223332 2456777776666666553
No 217
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.42 E-value=0.00016 Score=75.07 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=30.7
Q ss_pred ceEEEEEeCCCccch-------HHHHHHHHhhcCEEEEEEECCC
Q 008991 20 SFLLNLIDTPGHVDF-------SYEVSRSLAACQGALLVVDAAQ 56 (547)
Q Consensus 20 ~~~l~liDTPGh~df-------~~~~~~~l~~aD~ailVvDa~~ 56 (547)
...++||||||+.++ .......++.||++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 357999999999875 3456677899999999999986
No 218
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.39 E-value=5.2e-05 Score=72.29 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=59.4
Q ss_pred EEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCC---CCHHHHHHHHH
Q 008991 22 LLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPT---ADPDRVKAQLK 98 (547)
Q Consensus 22 ~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~---~~~~~~~~~i~ 98 (547)
.+.++||+|...-... .-...+..+.++|+..+...... .....+.|.++|+||+|+.+ .+.++..+.+.
T Consensus 120 d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 192 (226)
T 2hf9_A 120 DLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAVGADIKKMENDAK 192 (226)
T ss_dssp SEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHH
T ss_pred CEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchhHHHHHHHHHHHH
Confidence 5667777774211000 00134556677776543322211 11124688999999999854 23444444444
Q ss_pred HhcCCCCccceeccccccccccccHHHHHhhC
Q 008991 99 SMFDLDPSEALLTSAKTGQGLEHVLPAVIERI 130 (547)
Q Consensus 99 ~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~i 130 (547)
+ ++ ...+++++||++|.|++++++.|.+.+
T Consensus 193 ~-~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 193 R-IN-PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp H-HC-TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H-hC-CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3 22 234789999999999999999997654
No 219
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.37 E-value=0.00033 Score=59.81 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=55.6
Q ss_pred CceeEEEEe---eeccccccEEEEEEEecCccccCCEEEEecCC-CeeEEEEEEeecCCcccccccccCcEEEEEecccc
Q 008991 139 SSLRMLLLD---SYYDEYKGVICHVAVVDGTLRKGDKISSAATG-QAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRS 214 (547)
Q Consensus 139 ~p~~~~v~~---~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~-~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~ 214 (547)
.|.+..|.. ..+ |.+..+||.+|+|++|+.| +.+ ...+|++|.. +..++++|.+||-+.+. +++
T Consensus 33 ~P~k~~ilp~~~~vF----gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~---~~e~v~eA~~GdnVai~--Ikg 100 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG----KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER---NREKVEFAIAGDRIGIS--IEG 100 (116)
T ss_dssp CSEEEEEEEEEEETT----EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE---TTEEESEEETTCEEEEE--EES
T ss_pred CcEEEEEEecCCeEE----CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE---CCcCcCCcCCCCEEEEE--EEC
Confidence 455555544 333 7788999999999999999 666 5777877766 34679999999977774 333
Q ss_pred cc-cccccCcccC
Q 008991 215 TK-EARIGDTLYH 226 (547)
Q Consensus 215 ~~-~~~~Gdtl~~ 226 (547)
.. +++.||++..
T Consensus 101 ~~~~I~~GdVLyv 113 (116)
T 1xe1_A 101 KIGKVKKGDVLEI 113 (116)
T ss_dssp CCCCCCTTCEEEE
T ss_pred CccccCCCcEEEE
Confidence 22 7888988764
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.21 E-value=0.00053 Score=72.72 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=70.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHH------hhcCEEEEEEECCCCCchhhHHHHHHHHhcCC-c-EEeeeecCCCCCCCH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSL------AACQGALLVVDAAQGVQAQTVANFYLAFESEL-T-IIPVINKIDQPTADP 90 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l------~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l-p-iIvviNKiDl~~~~~ 90 (547)
.++.+.||||||...........+ ..+|.+++|+|+..|.. ...... ....++ | ..+|+||+|... ..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~-~~~~~~~~i~gvVlnK~D~~~-~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAK-AFKEAVGEIGSIIVTKLDGSA-KG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHH-HHHTTSCSCEEEEEECSSSCS-TT
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHH-HHhhcccCCeEEEEeCCCCcc-ch
Confidence 457789999999876433333222 25899999999987642 222222 223346 7 889999999853 22
Q ss_pred HHHHHHHHHhcCCC---------------Cccceecccccccc-ccccHHHHHhhCCC
Q 008991 91 DRVKAQLKSMFDLD---------------PSEALLTSAKTGQG-LEHVLPAVIERIPP 132 (547)
Q Consensus 91 ~~~~~~i~~~l~~~---------------~~~vi~~SAk~g~G-v~~Ll~~l~~~ip~ 132 (547)
..... +...++.+ ..+..++|+..|.| +..|++.+.+.++.
T Consensus 255 g~~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 255 GGALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp HHHHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred HHHHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 33333 44444322 23456789999999 99999998777654
No 221
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.08 E-value=0.0015 Score=54.30 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=67.4
Q ss_pred eEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccccccccc
Q 008991 142 RMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTKEARIG 221 (547)
Q Consensus 142 ~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~~~~~G 221 (547)
.|-|-++|..+..|+|+-++|.+|.++.+..+++.+.+...--.+|..+.....++.++.+|.=+.+. +++..|++.|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~--l~~~~dik~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLT--IKNFNDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEE--CTTCSSCSSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEE--EcCcCCCCCC
Confidence 56677788778889999999999999999999999988765444565665555789999999988774 6778899999
Q ss_pred Cccc
Q 008991 222 DTLY 225 (547)
Q Consensus 222 dtl~ 225 (547)
|.|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9873
No 222
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.97 E-value=0.00078 Score=69.53 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=66.5
Q ss_pred HhhcCEEEEEEECCCCCchhh---HHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceecccccccc
Q 008991 42 LAACQGALLVVDAAQGVQAQT---VANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQG 118 (547)
Q Consensus 42 l~~aD~ailVvDa~~g~~~qt---~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~G 118 (547)
++.+|.+++| ||..+ .+.. ...+..+...++|.++|+||+|+.........+++...+.-...+++.+||.+|.|
T Consensus 128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence 5789998866 55443 2222 23334456679999999999999653221112333333321123689999999999
Q ss_pred ccccHHHHHhhCCCCCccccCceeEEEEeeeccccccEEEEEEEecCccc
Q 008991 119 LEHVLPAVIERIPPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLR 168 (547)
Q Consensus 119 v~~Ll~~l~~~ip~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk 168 (547)
+++|...+. +...++ .-.++.|+.++++...|.+.
T Consensus 206 l~~L~~~~~-----------G~~~~l----vG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEALT-----------GRISIF----AGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHHT-----------TSEEEE----ECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhcC-----------CCEEEE----ECCCCccHHHHHHHHhcccc
Confidence 988876541 112222 22456777777777777654
No 223
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.81 E-value=6.6e-05 Score=78.01 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=66.9
Q ss_pred CCCCCeEEEeCCC--ceEEEEEeCCCccchH-------HHHHHH---HhhcCEEEEEEECCCCCchhhHHHHHHHHhcCC
Q 008991 7 LNGPGTSEAHNPS--SFLLNLIDTPGHVDFS-------YEVSRS---LAACQGALLVVDAAQGVQAQTVANFYLAFESEL 74 (547)
Q Consensus 7 s~~pG~T~~~~~~--~~~l~liDTPGh~df~-------~~~~~~---l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l 74 (547)
|++||||++...- ...+.++||||..+.. .+.... ....+.+++++|+.+.........+..+...+.
T Consensus 195 ~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~ 274 (368)
T 3h2y_A 195 SHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRR 274 (368)
T ss_dssp ECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSE
T ss_pred CCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCc
Confidence 6889999875321 1127899999986532 222222 245788999999854322112222233334578
Q ss_pred cEEeeeecCCCCCC-CHHHHHHHHHHhcCCCCccceeccccccccccccH
Q 008991 75 TIIPVINKIDQPTA-DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVL 123 (547)
Q Consensus 75 piIvviNKiDl~~~-~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll 123 (547)
|+++++||+|.... ..+...+.+++.+|. .+.+.++.+..++.++.
T Consensus 275 ~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~---~l~p~~~~~~~~~~~l~ 321 (368)
T 3h2y_A 275 AFTCHFSNRLTIHRTKLEKADELYKNHAGD---LLSPPTPEELENMPELV 321 (368)
T ss_dssp EEEEEECTTSCEEEEEHHHHHHHHHHHBTT---TBCSSCHHHHHTSCCEE
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCC---ccCCCchhhHhhccCcE
Confidence 99999999998643 345666677777775 45666776666655443
No 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.70 E-value=5.8e-05 Score=78.49 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCC--ceEEEEEeCCCccchH-------HHHHHHH---hhcCEEEEEEECCCCCchhhHHHHHHHHhcCC
Q 008991 7 LNGPGTSEAHNPS--SFLLNLIDTPGHVDFS-------YEVSRSL---AACQGALLVVDAAQGVQAQTVANFYLAFESEL 74 (547)
Q Consensus 7 s~~pG~T~~~~~~--~~~l~liDTPGh~df~-------~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l 74 (547)
|++||||++...- +..+.++||||..+.. .+....+ ...|.+++++|+.+.........+..+...+.
T Consensus 196 ~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~ 275 (369)
T 3ec1_A 196 SYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRR 275 (369)
T ss_dssp EECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSE
T ss_pred cCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCc
Confidence 5789999875321 1136899999985432 2223333 56899999999854322112222333344678
Q ss_pred cEEeeeecCCCCCC-CHHHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 75 TIIPVINKIDQPTA-DPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 75 piIvviNKiDl~~~-~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
|+++++||+|.... ..+...+.+++.+|. .+.+.++.+..++.++
T Consensus 276 ~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~---~l~p~~~~~~~~~~~l 321 (369)
T 3ec1_A 276 SFVCYMANELTVHRTKLEKADSLYANQLGE---LLSPPSKRYAAEFPPL 321 (369)
T ss_dssp EEEEEECTTSCEEEEEGGGHHHHHHHHBTT---TBCSSCGGGTTTCCCE
T ss_pred eEEEEecCCcccccccHHHHHHHHHHhcCC---ccCCCCchhhhhccCc
Confidence 99999999998543 235556667777764 4566666665555433
No 225
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.61 E-value=0.0056 Score=52.56 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=65.9
Q ss_pred eeEEEEeeeccccccE---EEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEecccccc-
Q 008991 141 LRMLLLDSYYDEYKGV---ICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRSTK- 216 (547)
Q Consensus 141 ~~~~v~~~~~d~~~G~---v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~~- 216 (547)
-.|-|-++|..+..|+ |+-++|.+|.++.+..+++.+.+...--.+|..+.....++.++.+|.=|.+. +++..
T Consensus 11 G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~--l~~fni 88 (120)
T 2crv_A 11 GEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLS--LDEEKV 88 (120)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEE--CSCTTS
T ss_pred EEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEE--EccCCC
Confidence 4566777777677787 99999999999999999999988655434455555555678999999988774 67778
Q ss_pred cccccCccc
Q 008991 217 EARIGDTLY 225 (547)
Q Consensus 217 ~~~~Gdtl~ 225 (547)
|++.||+|-
T Consensus 89 Dik~GDiIE 97 (120)
T 2crv_A 89 EFKPGDQVI 97 (120)
T ss_dssp CCCTTEEEE
T ss_pred CCCCCCEEE
Confidence 999999883
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.49 E-value=0.0079 Score=60.37 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCccc--hHHHHH------HHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCC
Q 008991 19 SSFLLNLIDTPGHVD--FSYEVS------RSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTAD 89 (547)
Q Consensus 19 ~~~~l~liDTPGh~d--f~~~~~------~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~ 89 (547)
.+|.+.||||||... ...... .....+|.+++|+|+..+ .+.......... .++ ..+|+||+|... +
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~-~ 254 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA-K 254 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-T
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-c
Confidence 457789999999877 433222 245579999999999764 223333332222 577 778999999743 3
Q ss_pred HHHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 90 PDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 90 ~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
.... ..+...++. |+.+++ +|++++++
T Consensus 255 ~g~~-~~~~~~~~~---pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 255 GGGA-LSAVAATGA---TIKFIG--TGEKIDEL 281 (297)
T ss_dssp HHHH-HHHHHTTTC---CEEEEE--CSSSTTCE
T ss_pred hHHH-HHHHHHHCc---CEEEEe--CCCChhhc
Confidence 3322 334444543 566655 68887765
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.0091 Score=63.21 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=54.9
Q ss_pred ceEEEEEeCCCccchH----HHHHH--HHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHH
Q 008991 20 SFLLNLIDTPGHVDFS----YEVSR--SLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 20 ~~~l~liDTPGh~df~----~~~~~--~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
++.+.||||||..... .++.. ....+|.++||+||..|... ........+.--+..+|+||+|... .....
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~~-~gG~~ 258 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGSA-KGGGA 258 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSCS-SHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCcc-cccHH
Confidence 4778899999964422 22222 23357999999999876332 2222222222223568999999853 22222
Q ss_pred HHHHHHhcCCCCccceecccccccccccc
Q 008991 94 KAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 94 ~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
-.+....+. |+.+++. |+++++|
T Consensus 259 -ls~~~~~g~---PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 259 -LSAVAATGA---PIKFIGT--GEKIDDI 281 (443)
T ss_dssp -HHHHHTTCC---CEEEEEC--SSSTTCE
T ss_pred -HHHHHHHCC---CEEEEEc--CCChHHh
Confidence 233333443 6666664 8888764
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.12 E-value=0.012 Score=62.16 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=57.9
Q ss_pred CceEEEEEeCCCccc------hHHHHHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCH
Q 008991 19 SSFLLNLIDTPGHVD------FSYEVSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADP 90 (547)
Q Consensus 19 ~~~~l~liDTPGh~d------f~~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~ 90 (547)
.++.+.|+||||... +..++....+ ..|.+++|+|+..|.... .......+.--+..+++||+|.. ++.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~--~~a~~f~~~~~~~gVIlTKlD~~-a~~ 254 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY--DLASRFHQASPIGSVIITKMDGT-AKG 254 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH--HHHHHHHHHCSSEEEEEECGGGC-SCH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH--HHHHHHhcccCCcEEEEeccccc-ccc
Confidence 357788999999644 4445544333 359999999998763332 22222222223478899999975 344
Q ss_pred HHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
........ ..+. |+.+++. |+++++|
T Consensus 255 G~als~~~-~~g~---Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 255 GGALSAVV-ATGA---TIKFIGT--GEKIDEL 280 (433)
T ss_dssp HHHHHHHH-HHTC---EEEEEEC--CSSSSCE
T ss_pred hHHHHHHH-HHCC---CEEEEEC--CCChHhC
Confidence 43333333 3444 6677775 8887653
No 229
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.88 E-value=0.019 Score=53.27 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=57.3
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc-----CCcEEeeeecCCCCCCCHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES-----ELTIIPVINKIDQPTADPDRVK 94 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~lpiIvviNKiDl~~~~~~~~~ 94 (547)
.|.+.++|||+.. .......+..+|.+++++...... ..+...+..+.+. ++++.+|+|++|..........
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~ 151 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLK 151 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHH
Confidence 4778899999876 456677888999999999988766 6666666666544 4678999999996433334444
Q ss_pred HHHHHhcCC
Q 008991 95 AQLKSMFDL 103 (547)
Q Consensus 95 ~~i~~~l~~ 103 (547)
+.+++ ++.
T Consensus 152 ~~l~~-~~~ 159 (206)
T 4dzz_A 152 ESIKD-TGV 159 (206)
T ss_dssp HHHHH-HTC
T ss_pred HHHHH-cCC
Confidence 44444 443
No 230
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.01 E-value=0.038 Score=52.09 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=55.9
Q ss_pred CceEEEEEeCCCc-cchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh-cCCcEEeeeecCCCCC-CCHHHHHH
Q 008991 19 SSFLLNLIDTPGH-VDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE-SELTIIPVINKIDQPT-ADPDRVKA 95 (547)
Q Consensus 19 ~~~~l~liDTPGh-~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~lpiIvviNKiDl~~-~~~~~~~~ 95 (547)
..|.+.++|||+. ... .....+..||.+|+++.........+...+..+.. .+.++.+++|++|... ....+..+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 3577889999987 443 45567889999999998765444444555555555 3778889999999754 33344455
Q ss_pred HHHHhcCC
Q 008991 96 QLKSMFDL 103 (547)
Q Consensus 96 ~i~~~l~~ 103 (547)
.+++ ++.
T Consensus 144 ~l~~-~g~ 150 (209)
T 3cwq_A 144 LLTT-AGL 150 (209)
T ss_dssp HHHH-TTC
T ss_pred HHHH-cCC
Confidence 5554 553
No 231
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.01 E-value=0.034 Score=59.83 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=75.3
Q ss_pred ccHHHHHhhC---CCCCccccCceeEEEEeeeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccc
Q 008991 121 HVLPAVIERI---PPPRGIINSSLRMLLLDSYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPT 197 (547)
Q Consensus 121 ~Ll~~l~~~i---p~p~~~~~~p~~~~v~~~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v 197 (547)
+|++.+-.++ .+|.....-...+-|-.+|..+..|.|+-++|.+|.++.|..+.+.+.|.......|..+.....++
T Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v 465 (501)
T 1zo1_I 386 NLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDV 465 (501)
T ss_dssp HHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEE
T ss_pred HHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccc
Confidence 3555444332 2344333334556677777767779999999999999999999999888755555565555556789
Q ss_pred cccccCcEEEEEecccccccccccCcccC
Q 008991 198 GVLLTGQVGYVVTGMRSTKEARIGDTLYH 226 (547)
Q Consensus 198 ~~~~aGdig~i~~glk~~~~~~~Gdtl~~ 226 (547)
+++..|+-|.+ ++++..+++.||.|-.
T Consensus 466 ~e~~~g~ecgi--~~~~~~~~~~gd~~~~ 492 (501)
T 1zo1_I 466 NEVRNGMECGI--GVKNYNDVRTGDVIEV 492 (501)
T ss_dssp SEEETTCCEEE--EBCCCTTCCTTCEEEE
T ss_pred cEECCCCEEEE--EEcCcCCCCCCCEEEE
Confidence 99999997777 4677789999999854
No 232
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.92 E-value=0.05 Score=52.99 Aligned_cols=67 Identities=16% Similarity=0.027 Sum_probs=48.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl 85 (547)
..|.+.|||||+...........+..+|.+++|+.........+...+..+.+.+++++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46888999999876533222233447999999998876655556666777777788977 99999884
No 233
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.72 E-value=0.11 Score=56.48 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=76.1
Q ss_pred ccHHHHHhhC---CCCCccccCceeEEEEeeecccc---ccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCc
Q 008991 121 HVLPAVIERI---PPPRGIINSSLRMLLLDSYYDEY---KGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPEL 194 (547)
Q Consensus 121 ~Ll~~l~~~i---p~p~~~~~~p~~~~v~~~~~d~~---~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~ 194 (547)
+|++.+-..+ .+|.....-.-.+-|..+|.-+. .|.|+-++|.+|+++.|..+++.+.|...-..+|..+....
T Consensus 425 ~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k 504 (537)
T 3izy_P 425 RLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHK 504 (537)
T ss_dssp CSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSS
T ss_pred HHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccC
Confidence 3555544432 23443334456777777776543 67999999999999999999999988876666777776667
Q ss_pred ccccccccCcEEEEEecccc-cccccccCcc
Q 008991 195 TPTGVLLTGQVGYVVTGMRS-TKEARIGDTL 224 (547)
Q Consensus 195 ~~v~~~~aGdig~i~~glk~-~~~~~~Gdtl 224 (547)
.++.++..|.=|.+ ++++ ..+++.||+|
T Consensus 505 ~~v~ev~~g~ecgi--~~~~~~~~~~~gd~i 533 (537)
T 3izy_P 505 DDTSVVKTGMDCGL--SLDEEKIEFKVGDAI 533 (537)
T ss_dssp CCCSEEETTCEEEE--ESSSSCSSCSCCCEE
T ss_pred cccceEcCCCEEEE--EEcCcccCCCCCCEE
Confidence 78999999998877 4666 7899999987
No 234
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.70 E-value=0.019 Score=59.98 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=24.8
Q ss_pred eEEEEEeCCCccchHH-------HHHHHHhhcCEEEEEEECCC
Q 008991 21 FLLNLIDTPGHVDFSY-------EVSRSLAACQGALLVVDAAQ 56 (547)
Q Consensus 21 ~~l~liDTPGh~df~~-------~~~~~l~~aD~ailVvDa~~ 56 (547)
..+++|||||+..+.. .+...++.||++++|+|+++
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3589999999988654 56778899999999999975
No 235
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.48 E-value=0.073 Score=56.01 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=43.6
Q ss_pred EEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCC-CHHHHHHHHHHhcCCCCccceecccc
Q 008991 47 GALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTA-DPDRVKAQLKSMFDLDPSEALLTSAK 114 (547)
Q Consensus 47 ~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~-~~~~~~~~i~~~l~~~~~~vi~~SAk 114 (547)
++++++|+..+......+.+..+. .+.|+|+|+||+|.... ......+.+.+.+.....+++.+|.-
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 366788888888888877776664 78999999999997643 23444455555454455678888853
No 236
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.43 E-value=0.088 Score=51.00 Aligned_cols=83 Identities=22% Similarity=0.255 Sum_probs=52.9
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHH---HHHHHHh---cCCcEE-eeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVA---NFYLAFE---SELTII-PVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~---~~~~~~~---~~lpiI-vviNKiDl~~~~~~ 91 (547)
..|.+.|||||+.... .....+..||.+++++.+.......+.. .+..... .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 5678899999987543 3456778899999999986532222222 2222221 357764 89999986543334
Q ss_pred HHHHHHHHhcCC
Q 008991 92 RVKAQLKSMFDL 103 (547)
Q Consensus 92 ~~~~~i~~~l~~ 103 (547)
...+++++.++.
T Consensus 188 ~~~~~l~~~~~~ 199 (257)
T 1wcv_1 188 QVEAQLRAHFGE 199 (257)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHccc
Confidence 455666666553
No 237
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.21 E-value=0.16 Score=53.19 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=71.4
Q ss_pred EEEEEeCCCccch---HHHHHH--HHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC-------C--
Q 008991 22 LLNLIDTPGHVDF---SYEVSR--SLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP-------T-- 87 (547)
Q Consensus 22 ~l~liDTPGh~df---~~~~~~--~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~-------~-- 87 (547)
.++++|+||...- ..+... .+...+..+. +|+.. .+.|.......+...+.|+++|+||.|+. +
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD 198 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQ 198 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCT
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCC
Confidence 5789999997421 112222 2334455554 77754 46677777777777899999999999863 1
Q ss_pred -CCHHHHHHHHHHhc-------CCCCccceeccc--cccccccccHHHHHhhCCC
Q 008991 88 -ADPDRVKAQLKSMF-------DLDPSEALLTSA--KTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 88 -~~~~~~~~~i~~~l-------~~~~~~vi~~SA--k~g~Gv~~Ll~~l~~~ip~ 132 (547)
...+.+.+.+.+.. +.+...++.+|+ .++.|+++|.+.+.+.+|.
T Consensus 199 ~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 199 TFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 12333444444331 233346788999 7778899999999999865
No 238
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=94.09 E-value=0.029 Score=44.18 Aligned_cols=63 Identities=13% Similarity=0.222 Sum_probs=54.5
Q ss_pred EEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEE
Q 008991 355 VVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASF 420 (547)
Q Consensus 355 ~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~ 420 (547)
...++.+|=..+|.|+.+|.+..+.+.+.+|. ..|.++..+|.++. ..|...|..+|+|.+.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~--~~V~l~v~vp~~~~-~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQ--AFVLLRVALPAAKV-AEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE--EEEEEEEEECC-CC--CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEccccc--CeEEEEEEECHHHH-HHHHHHHHHHhCCEEEE
Confidence 35678888899999999999999999999994 46999999999998 58999999999998754
No 239
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.83 E-value=0.071 Score=51.58 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=54.8
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHHHHHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPDRVKAQLK 98 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~~~~~~i~ 98 (547)
.|.+.|||||+... ......+..+|.+|+|+.+.......+...+..+...+.+ .-+|+|++|.... ....+++.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~--~~~~~~~~ 185 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI--EMAKNEIE 185 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH--HHHHHHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc--cchHHHHH
Confidence 47788999998655 5566778899999999987654333445555555555666 4589999996432 23455666
Q ss_pred HhcCCC
Q 008991 99 SMFDLD 104 (547)
Q Consensus 99 ~~l~~~ 104 (547)
+.++.+
T Consensus 186 ~~~~~~ 191 (263)
T 1hyq_A 186 AILEAK 191 (263)
T ss_dssp HHTTSC
T ss_pred HHhCCC
Confidence 666643
No 240
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.74 E-value=0.079 Score=50.27 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~~~~~~i 97 (547)
..|.+.++|||+... ......+..+|.++++++........+...+..+...+.+ .-+|+|++|..... ...+++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 457788999998655 4566788999999999987654334445555666666766 56889999964332 223445
Q ss_pred HHhcCC
Q 008991 98 KSMFDL 103 (547)
Q Consensus 98 ~~~l~~ 103 (547)
.+.++.
T Consensus 186 ~~~~~~ 191 (237)
T 1g3q_A 186 EDVMEV 191 (237)
T ss_dssp HHHHCS
T ss_pred HHHhCc
Confidence 555554
No 241
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.71 E-value=0.16 Score=49.22 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=54.3
Q ss_pred EEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEE
Q 008991 355 VVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFD 421 (547)
Q Consensus 355 ~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~ 421 (547)
|++.|.+|.+|.|.+.+.|... |.+...++.+++.....+.+|-.-- .+|.+.|++.|+|.|.+.
T Consensus 185 m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~-~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 185 VRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQ-DSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGH-HHHHHHHHHHTTTCCEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccH-HHHHHHHHHhcCCeEEEE
Confidence 6889999999999999999655 7888877766566677788997754 689999999999999764
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.36 E-value=0.079 Score=55.93 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=41.6
Q ss_pred CceEEEEEeCCCccchHHHHHHH------HhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRS------LAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~------l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~ 86 (547)
.+|.+.||||||...+....... +..+|.+++|+|+..|.. ....... ...+++ .-+|+||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~-f~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKA-FNEALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHH-HHHHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHH-HhccCCCeEEEEecCCCC
Confidence 45788999999987654433332 336889999999987632 2222221 122355 34699999974
No 243
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.34 E-value=0.13 Score=50.78 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=53.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh------cCCcE-EeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE------SELTI-IPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~lpi-IvviNKiDl~~~~~~ 91 (547)
..|.+.|||||+.... ....++..||.+++++.+...........+..+.. .++++ -+|+|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 4578899999987654 34556778999999998865443333333333322 36774 489999997543234
Q ss_pred HHHHHHHHhcCC
Q 008991 92 RVKAQLKSMFDL 103 (547)
Q Consensus 92 ~~~~~i~~~l~~ 103 (547)
...+++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 455666666653
No 244
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=93.09 E-value=0.15 Score=49.14 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=54.2
Q ss_pred EEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEE
Q 008991 355 VVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFD 421 (547)
Q Consensus 355 ~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~ 421 (547)
|++.|.+|.+|.|.+.+.|.. -|.+...++.+++.....+.+|-.-- .+|.+.|++.|+|.|.+.
T Consensus 170 m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~~dgs~~~v~~Ippg~~-~~~~~~l~~~tkG~~~~~ 234 (240)
T 1t95_A 170 MEIAIKIPPEHTGRAISALYN-FGGVTREEWQRDGSWICVMRIPSGMY-GDLMDLLGKVAKGEALTK 234 (240)
T ss_dssp EEEEEEECGGGHHHHHHHHHH-HCCEEEEEECTTSCEEEEEEEEGGGH-HHHHHHHHHHHTTCCEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCCcEEEEEEECCccH-HHHHHHHHHhcCCeEEEE
Confidence 588899999999999999954 47788877766566677889997754 689999999999999765
No 245
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.52 E-value=0.093 Score=49.92 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=52.3
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPDRVKAQL 97 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~~~~~~i 97 (547)
..|.+.+||||+.... .....+..||.+++++++..................+++ +.+++|+.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 4678899999987644 455678999999999987543333334444555566765 7799999983 2234556
Q ss_pred HHhcC
Q 008991 98 KSMFD 102 (547)
Q Consensus 98 ~~~l~ 102 (547)
.+.++
T Consensus 203 ~~~~~ 207 (254)
T 3kjh_A 203 KKHLP 207 (254)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 66665
No 246
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.23 E-value=0.19 Score=49.44 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=49.1
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQPT 87 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~~ 87 (547)
.|.+.|||||+..... ........||++++|+.+..............+...+.+++ +|+|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 4678899999875432 22334467999999999987666666677777777788876 8999999643
No 247
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.88 E-value=0.51 Score=44.11 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=52.1
Q ss_pred CceEEEEEeCCCccch--H--HHHHHHHhhc-CEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCCCCCHHH
Q 008991 19 SSFLLNLIDTPGHVDF--S--YEVSRSLAAC-QGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQPTADPDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df--~--~~~~~~l~~a-D~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~~~~~~~ 92 (547)
++|.+.||||||...- . .......+.+ +.+++|+++..+...++...+..+...+++++ +|+|++|........
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 3577889999976421 0 0111122222 35788888755444445555566666788854 889999975444456
Q ss_pred HHHHHHHhcCC
Q 008991 93 VKAQLKSMFDL 103 (547)
Q Consensus 93 ~~~~i~~~l~~ 103 (547)
..+.+.+.++.
T Consensus 187 ~~~~l~~~~~~ 197 (224)
T 1byi_A 187 YMTTLTRMIPA 197 (224)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHcCC
Confidence 66777777765
No 248
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.70 E-value=0.28 Score=47.54 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=50.7
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc--CCcEEeeeecCCCCCCCHHHHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES--ELTIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~lpiIvviNKiDl~~~~~~~~~~~ 96 (547)
..|.+.|||||+... ......+..||.+++++................+... ++++.+|+|+++... ...+..+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHH
Confidence 457788999998653 3466778889999999998653332233444445544 467889999995432 22344444
Q ss_pred HHH
Q 008991 97 LKS 99 (547)
Q Consensus 97 i~~ 99 (547)
+++
T Consensus 220 l~~ 222 (267)
T 3k9g_A 220 LKT 222 (267)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 249
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=91.47 E-value=0.41 Score=44.47 Aligned_cols=67 Identities=22% Similarity=0.264 Sum_probs=58.4
Q ss_pred ecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEE
Q 008991 351 WEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASF 420 (547)
Q Consensus 351 lEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~ 420 (547)
..|...+++.+|=..+|.|..+|.+.. ++.+.+|.+. -+.++..+|..+. ..|...|..+|+|.+.+
T Consensus 124 ~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~y~~~-gV~~~~~v~~~~~-~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 124 LVERVGLAFLVPFAEVGRVYALLEARA-LKAEETYTPE-GVRFALLLPKPER-EGFLRALLDATRGQVAL 190 (191)
T ss_dssp CCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEEEETT-EEEEEEEEEHHHH-HHHHHHHHHHTTTCCEE
T ss_pred EeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccEEcCC-eEEEEEEECHHHH-HHHHHHHHHHhCCeEEe
Confidence 456678899999999999999999988 9999998642 2899999999998 58999999999998754
No 250
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.73 E-value=0.28 Score=46.50 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=53.5
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCC---cEEeeeecCCCCCCCHHHHHHH
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESEL---TIIPVINKIDQPTADPDRVKAQ 96 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~l---piIvviNKiDl~~~~~~~~~~~ 96 (547)
.|.+.++|||+.... .....+..||.+++++.........+...+..+...+. .+-+|+|++|...... .++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~---~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT---SDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC---HHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC---HHH
Confidence 577889999987643 45567889999999998764333344555566666553 3779999999643221 255
Q ss_pred HHHhcCC
Q 008991 97 LKSMFDL 103 (547)
Q Consensus 97 i~~~l~~ 103 (547)
+++.++.
T Consensus 193 ~~~~~~~ 199 (245)
T 3ea0_A 193 IEKVIGR 199 (245)
T ss_dssp HHHHHTS
T ss_pred HHHHhCC
Confidence 6666665
No 251
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=90.05 E-value=0.5 Score=44.79 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=61.0
Q ss_pred eecceEEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEE
Q 008991 350 CWEPTVVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFD 421 (547)
Q Consensus 350 llEP~~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~ 421 (547)
-..|...++|.+|=..+|.|..+|.+..+++.+.+|.+ .+.++..+|..+. ..|...|..+|+|.+.+.
T Consensus 135 ~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~--~V~~~l~v~~~~~-~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 135 RKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQA--FVLLRVALPAAKV-AEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEESS--SEEEEEEECSSTH-HHHHHHHHHHHTTCCCCE
T ss_pred EEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEecC--CEEEEEEECHHHH-HHHHHHHHHHhCCeEEEE
Confidence 35677789999999999999999999999999999853 5899999999998 589999999999998553
No 252
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.97 E-value=0.46 Score=47.28 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=49.6
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~ 86 (547)
.|.+.|||||+...... .......||.+++|+.+......+....+..+...+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 46788999999765432 2234467999999999887766777777777777788754 889999964
No 253
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.73 E-value=0.14 Score=50.41 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=49.5
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCch---hhHHH-------------H---HHHH----hcC-Cc
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQA---QTVAN-------------F---YLAF----ESE-LT 75 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~---qt~~~-------------~---~~~~----~~~-lp 75 (547)
.|.+.|||||+.. .......+..||.+|+++........ .+... + ..+. ..+ ++
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4778899999875 45677889999999999987532110 11111 2 2222 225 77
Q ss_pred EEeeeecCCCCC-CCHHHHHHHHHH
Q 008991 76 IIPVINKIDQPT-ADPDRVKAQLKS 99 (547)
Q Consensus 76 iIvviNKiDl~~-~~~~~~~~~i~~ 99 (547)
+.+|+|++|... ....+..+.+++
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~ 205 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNA 205 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHH
T ss_pred EEEEEeeecCCCcchhHHHHHHHHH
Confidence 889999999755 333444555554
No 254
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.41 E-value=0.27 Score=47.15 Aligned_cols=64 Identities=8% Similarity=0.122 Sum_probs=44.6
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcC---------CcEEeeeecCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESE---------LTIIPVINKIDQ 85 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~---------lpiIvviNKiDl 85 (547)
.|.+.++|||+... ......+..||.+++++++.......+...+..+...+ ...-+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 57889999998654 46677888999999999875433333334444443333 457899999984
No 255
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.63 E-value=0.72 Score=45.61 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=50.0
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPT 87 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~ 87 (547)
.|.+.|||||...... ........||++|+|+.+...........+..+...+.+ +-+|+|++|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4678899999876542 233345679999999999876666666777777778877 458899999754
No 256
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=87.92 E-value=0.15 Score=49.40 Aligned_cols=64 Identities=11% Similarity=-0.009 Sum_probs=54.9
Q ss_pred EEEEEEcCCCcHHHHHHHHhhcCeeEeeeeEcCCcEEEEEEEechHhHHHHHHHHhcccCcCeEEEE
Q 008991 355 VVATIIIPSEYVGSVITLCSERRGQQLEYSFIDSQRAFMKYCLPLREIVVDFYNELKSLTSGYASFD 421 (547)
Q Consensus 355 ~~~~I~vP~e~~G~v~~~l~~rRG~~~~~~~~~~~~~~i~~~iPl~ei~~~f~~~Lks~T~G~as~~ 421 (547)
|++.|.+|.+|.|.+.+.|.+..|.+.+.++.+ + ..+.+.+|-.-- .+|.+.|++.|+|.|.+.
T Consensus 174 m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~-~-~~~v~~I~pg~~-~~~~~~v~~~tkG~~~~e 237 (252)
T 2kdo_A 174 MRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQ-Q-LEIVCLIDPGCF-REIDELIKKETKGKGSLE 237 (252)
T ss_dssp CCEEEECBHHHHHHHTTTHHHHTCEEEEECCSS-B-CCEEECCCGGGH-HHHHHHHHHHTTTTSEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHHhhCcceeeeccC-C-eEEEEEECCcch-HHHHHHHHHhcCCCEEEE
Confidence 578899999999999999999989998887755 4 567888998765 689999999999999765
No 257
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.07 E-value=0.63 Score=46.06 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=48.8
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcEE-eeeecCCCCCCCHHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTII-PVINKIDQPTADPDRV 93 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpiI-vviNKiDl~~~~~~~~ 93 (547)
+.|.+.|||||+..... .+...+..||.+++|+++.......+...+..+.. .+++++ +|+|+++.. ..
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 35788899999865432 12346788999999997654322333334444443 356655 899999842 23
Q ss_pred HHHHHHhcCC
Q 008991 94 KAQLKSMFDL 103 (547)
Q Consensus 94 ~~~i~~~l~~ 103 (547)
.+++.+.++.
T Consensus 229 ~~~~~~~~g~ 238 (307)
T 3end_A 229 VDRFCKETNF 238 (307)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 4555555554
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=86.83 E-value=0.91 Score=45.69 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=51.8
Q ss_pred CceEEEEEeCCCccchHHHHHHH-------H-----hhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRS-------L-----AACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQ 85 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~-------l-----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl 85 (547)
.+|.+.||||||........... + ..+|.+++|+|+..+ .++....... ...++ .=+|+||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~-~~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEF-SKVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHH-TTTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHH-hhcCCCcEEEEeCCCC
Confidence 45788899999986643222211 1 137899999999854 2233322211 12344 3478999996
Q ss_pred CCCCHHHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 86 PTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
... ... ...+...++. |+.+++ .|++++++
T Consensus 267 ~~~-~g~-~~~~~~~~~~---Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 267 TSK-GGI-GLAIKELLNI---PIKMIG--VGEKVDDL 296 (320)
T ss_dssp CSC-TTH-HHHHHHHHCC---CEEEEE--CSSSTTCE
T ss_pred CCc-hhH-HHHHHHHHCc---CEEEEe--CCCCcccc
Confidence 432 222 2344445554 444442 56666553
No 259
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=86.74 E-value=1.2 Score=48.89 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=55.2
Q ss_pred eeccccccEEEEEEEecCccccCCEEEEecCCCeeEEEEEEeecCCcccccccccCcEEEEEeccccc---ccccccCcc
Q 008991 148 SYYDEYKGVICHVAVVDGTLRKGDKISSAATGQAYEIVDVGIMHPELTPTGVLLTGQVGYVVTGMRST---KEARIGDTL 224 (547)
Q Consensus 148 ~~~d~~~G~v~~~rV~~G~lk~gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdig~i~~glk~~---~~~~~Gdtl 224 (547)
+|..+. |.|+-++|.+|.++.|..+.. +.|. ....|..+.....+++++..|+-|.+. +++. .+++.||.|
T Consensus 473 ~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~~~k~~v~~~~~g~e~gi~--~~~~~~~~~~~~~d~~ 546 (594)
T 1g7s_A 473 VFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQDKGENLKSASRGQKVAMA--IKDAVYGKTIHEGDTL 546 (594)
T ss_dssp EEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEEETTEEESEEETTCCEEEE--EETCCBTTTBCTTCEE
T ss_pred EEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhcccCccccccCCCCEEEEE--EeCcccCCCCCCCCEE
Confidence 443343 899999999999999999988 5554 344455555555789999999977663 4553 689999998
Q ss_pred cCCC
Q 008991 225 YHNK 228 (547)
Q Consensus 225 ~~~~ 228 (547)
....
T Consensus 547 ~~~~ 550 (594)
T 1g7s_A 547 YVDI 550 (594)
T ss_dssp EECC
T ss_pred EEEE
Confidence 6543
No 260
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.91 E-value=0.82 Score=47.95 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=44.3
Q ss_pred CceEEEEEeCCCccchH----HHHHH--HHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHH
Q 008991 19 SSFLLNLIDTPGHVDFS----YEVSR--SLAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPD 91 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~----~~~~~--~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~ 91 (547)
.+|.+.||||||..... .++.. ....+|.+++|+|+..+. ......... ...++ .-+|+||+|... ...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f-~~~l~i~GVIlTKlD~~~-~~g 254 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAF-DEKVGVTGLVLTKLDGDA-RGG 254 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHH-HHHTCCCEEEEESGGGCS-SCH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHH-HhcCCceEEEEeCcCCcc-cHH
Confidence 45778899999975432 22211 223589999999997652 122222211 11344 457899999643 222
Q ss_pred HHHHHHHHhcCC
Q 008991 92 RVKAQLKSMFDL 103 (547)
Q Consensus 92 ~~~~~i~~~l~~ 103 (547)
.. -.+....+.
T Consensus 255 ~a-lsi~~~~g~ 265 (425)
T 2ffh_A 255 AA-LSARHVTGK 265 (425)
T ss_dssp HH-HHHHHHHCC
T ss_pred HH-HHHHHHHCC
Confidence 22 234444554
No 261
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=85.90 E-value=0.44 Score=49.47 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=29.3
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCC
Q 008991 21 FLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQ 56 (547)
Q Consensus 21 ~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~ 56 (547)
..+.+|||||... +.......++.+|+++.|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3679999999754 44567778899999999999975
No 262
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=84.56 E-value=2.5 Score=40.10 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCcc-----c--hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCCCCCH
Q 008991 19 SSFLLNLIDTPGHV-----D--FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQPTADP 90 (547)
Q Consensus 19 ~~~~l~liDTPGh~-----d--f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~~~~~ 90 (547)
+.+.+.+||+||.. + ....+.+. ...-+|+|+++..+.-.++...+..+...++++ =+++|+++-.....
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~--l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~ 186 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKA--LQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYI 186 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHH--HTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHH--cCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhh
Confidence 45778899998742 1 22222222 234589999998776666666666677788885 48899998654445
Q ss_pred HHHHHHHHHhcCCCCcccee
Q 008991 91 DRVKAQLKSMFDLDPSEALL 110 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~ 110 (547)
+...+.+++.++.+..-+++
T Consensus 187 ~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 187 DEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp HHHHHHHHHHHSCCCSEEEE
T ss_pred HHHHHHHHHhhCCCEEEECC
Confidence 66678888888876555566
No 263
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=84.29 E-value=1 Score=46.49 Aligned_cols=82 Identities=20% Similarity=0.136 Sum_probs=48.6
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhh-------HHHHHHHHhcCCc-----EEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQT-------VANFYLAFESELT-----IIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt-------~~~~~~~~~~~lp-----iIvviNKiDl~ 86 (547)
+.|.+.|||||.... ..+..++..||.+|+++....-.-..+ ...+..+...+.+ ++.++|+.|-
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~- 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG- 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-
Confidence 467889999998765 456678889999999987643211111 2233334444433 4678999983
Q ss_pred CCCHHHHHHHHHHhcCC
Q 008991 87 TADPDRVKAQLKSMFDL 103 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~~ 103 (547)
........+++.+.++.
T Consensus 323 ~~~~~~~~~~~~~~~g~ 339 (403)
T 3ez9_A 323 KRDHETSHSLAREVYAS 339 (403)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhH
Confidence 22234455667776764
No 264
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.93 E-value=2 Score=42.57 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=46.7
Q ss_pred ceEEEEEeCCCccchHH----HHHHH--HhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCCCCCHHH
Q 008991 20 SFLLNLIDTPGHVDFSY----EVSRS--LAACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQPTADPDR 92 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~----~~~~~--l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~~~~~~~ 92 (547)
++.+-|+||||...... ++... ...+|.+++|+|+..+ .++........ ..++ .-+|+||+|... ....
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~-~~~~i~givlnk~d~~~-~~g~ 255 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGDA-RGGA 255 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHH-HHTCCCEEEEECGGGCS-SCHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHh-hcCCCCEEEEECCCCCc-cHHH
Confidence 46788999998753322 22221 1258999999998753 22222222221 1244 447899999753 2333
Q ss_pred HHHHHHHhcCCCCccceeccccccccccc
Q 008991 93 VKAQLKSMFDLDPSEALLTSAKTGQGLEH 121 (547)
Q Consensus 93 ~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~ 121 (547)
.. .+...+++ |+.+++ +|+++++
T Consensus 256 ~~-~~~~~~~~---pi~~i~--~g~~~~d 278 (295)
T 1ls1_A 256 AL-SARHVTGK---PIYFAG--VSEKPEG 278 (295)
T ss_dssp HH-HHHHHHCC---CEEEEC--------C
T ss_pred HH-HHHHHHCc---CEEEEe--CCCCccc
Confidence 33 33344554 455544 4555544
No 265
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.58 E-value=2.7 Score=42.32 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=52.9
Q ss_pred eEEEEEeCCCccc----hHHHHHHH--HhhcCEEEEEEECCCCCchhhHHHHHHHH-hcCCcEEeeeecCCCCCCCHHHH
Q 008991 21 FLLNLIDTPGHVD----FSYEVSRS--LAACQGALLVVDAAQGVQAQTVANFYLAF-ESELTIIPVINKIDQPTADPDRV 93 (547)
Q Consensus 21 ~~l~liDTPGh~d----f~~~~~~~--l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~lpiIvviNKiDl~~~~~~~~ 93 (547)
+.+.++||+|... +..++... .-.+|-.++++|+..+. +......... ..++ .++++||+|-. +..-..
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~i-t~iilTKlD~~-a~~G~~ 287 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKI-DGIILTKLDAD-ARGGAA 287 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCC-CEEEEECGGGC-SCCHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCC-CEEEEeCcCCc-cchhHH
Confidence 4456899999743 33333322 12478999999987763 2233332222 2343 47789999963 333333
Q ss_pred HHHHHHhcCCCCccceecccccccccccc
Q 008991 94 KAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 94 ~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
.. +....+. |+.+++ +|++++++
T Consensus 288 l~-~~~~~~~---pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 288 LS-ISYVIDA---PILFVG--VGQGYDDL 310 (328)
T ss_dssp HH-HHHHHTC---CEEEEE--CSSSTTCE
T ss_pred HH-HHHHHCC---CEEEEe--CCCCcccc
Confidence 32 3333443 667776 88888664
No 266
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=79.04 E-value=1.8 Score=41.60 Aligned_cols=83 Identities=7% Similarity=-0.096 Sum_probs=47.3
Q ss_pred CceEEEEEeCCCccchHHHH-HHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcE-EeeeecCCCCCCCHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYEV-SRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTI-IPVINKIDQPTADPDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~-~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpi-IvviNKiDl~~~~~~~ 92 (547)
+.|.+.||||||........ .-....||.+++++.+.......+...+..+.. .++++ -+|+|+.+... ...
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--~~~ 191 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYE 191 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch--hHH
Confidence 45788999999964321111 112247999999988754222222223333322 25664 58899997422 244
Q ss_pred HHHHHHHhcCC
Q 008991 93 VKAQLKSMFDL 103 (547)
Q Consensus 93 ~~~~i~~~l~~ 103 (547)
..+++.+.++.
T Consensus 192 ~~~~l~~~~~~ 202 (269)
T 1cp2_A 192 LLDAFAKELGS 202 (269)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 55667666664
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.85 E-value=3.8 Score=40.51 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=48.2
Q ss_pred CceEEEEEeCCCccchHHH----HHHHHh--hcCEEEEEEECCCCCchhhHHHHHHHHhc-CCc-EEeeeecCCCCCCCH
Q 008991 19 SSFLLNLIDTPGHVDFSYE----VSRSLA--ACQGALLVVDAAQGVQAQTVANFYLAFES-ELT-IIPVINKIDQPTADP 90 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~----~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~~-~lp-iIvviNKiDl~~~~~ 90 (547)
.++.+.|+||||....... +...+. .+|.+++|+|++.+. +.... .+... .++ .-+++||+|.... .
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~~--~~~~~~~l~~~giVltk~D~~~~-~ 255 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMKH--IVKRFSSVPVNQYIFTKIDETTS-L 255 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHHH--HTTTTSSSCCCEEEEECTTTCSC-C
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHHH--HHHHHhcCCCCEEEEeCCCcccc-h
Confidence 3567889999998654332 223332 367889999998652 22221 12211 122 3456799997532 2
Q ss_pred HHHHHHHHHhcCCCCccceeccccccccc
Q 008991 91 DRVKAQLKSMFDLDPSEALLTSAKTGQGL 119 (547)
Q Consensus 91 ~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv 119 (547)
.... .+...++. |+.+++ +|+++
T Consensus 256 g~~~-~~~~~~~~---pi~~i~--~ge~v 278 (296)
T 2px0_A 256 GSVF-NILAESKI---GVGFMT--NGQNV 278 (296)
T ss_dssp HHHH-HHHHTCSC---CCSEEC--CSSCT
T ss_pred hHHH-HHHHHHCc---CEEEEE--CCCCC
Confidence 3333 33334454 444443 45555
No 268
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=77.53 E-value=5.9 Score=40.04 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=54.8
Q ss_pred cCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCCCC-C---------HHHHHHHHHHhcCCCCccceeccc
Q 008991 45 CQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQPTA-D---------PDRVKAQLKSMFDLDPSEALLTSA 113 (547)
Q Consensus 45 aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~~~-~---------~~~~~~~i~~~l~~~~~~vi~~SA 113 (547)
.+++++|.-...-....+...+..+...++|+ -+|+|++..... . .....+++.+.++..+.-.++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 46788888776655666778888888999996 588999986532 1 233456666666654444456666
Q ss_pred cccccccccHHHHHhhC
Q 008991 114 KTGQGLEHVLPAVIERI 130 (547)
Q Consensus 114 k~g~Gv~~Ll~~l~~~i 130 (547)
..=.|++.|- .+.+.+
T Consensus 317 ~e~~g~~~L~-~~~~~l 332 (349)
T 3ug7_A 317 TEAKGIETLK-QIAKIL 332 (349)
T ss_dssp SCSCSHHHHH-HHHHHH
T ss_pred CCCCCHHHHH-HHHHHH
Confidence 6656665543 333433
No 269
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=76.89 E-value=2.7 Score=40.95 Aligned_cols=83 Identities=10% Similarity=-0.015 Sum_probs=47.0
Q ss_pred CceEEEEEeCCCccchHHH-HHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHh----cCCcE-EeeeecCCCCCCCHHH
Q 008991 19 SSFLLNLIDTPGHVDFSYE-VSRSLAACQGALLVVDAAQGVQAQTVANFYLAFE----SELTI-IPVINKIDQPTADPDR 92 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~-~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~lpi-IvviNKiDl~~~~~~~ 92 (547)
..|.+.||||||....... .......||.+++++.+.......+...+..+.. .++++ -+|+|+.+. .....
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~--~~~~~ 194 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT--DREDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC--TTHHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc--hhHHH
Confidence 4688899999996432111 1112357999999987643222222222222222 36774 578899873 22345
Q ss_pred HHHHHHHhcCC
Q 008991 93 VKAQLKSMFDL 103 (547)
Q Consensus 93 ~~~~i~~~l~~ 103 (547)
..+++.+.++.
T Consensus 195 ~~~~l~~~~g~ 205 (289)
T 2afh_E 195 LIIALANKLGT 205 (289)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHcCc
Confidence 56667666664
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=76.85 E-value=2.7 Score=41.95 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=48.7
Q ss_pred ceEEEEEeCCCccchHHHH-------HHHH-----hhcCEEEEEEECCCCCchhhHHHHHHHH-hcCCcEEeeeecCCCC
Q 008991 20 SFLLNLIDTPGHVDFSYEV-------SRSL-----AACQGALLVVDAAQGVQAQTVANFYLAF-ESELTIIPVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~-------~~~l-----~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~lpiIvviNKiDl~ 86 (547)
++.+.|+||||.......+ .+.+ ..+|.+++|+|+..+ .+......... ..++ .-+++||+|..
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i-~gvVlTk~D~~ 262 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNV-TGIILTKLDGT 262 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCC-CEEEEECGGGC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCC-CEEEEeCCCCc
Confidence 4667899999974433322 1222 137889999999743 12222222221 2333 34678999964
Q ss_pred CCCHHHHHHHHHHhcCCCCccceeccccccccccc
Q 008991 87 TADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEH 121 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~ 121 (547)
+..-. .-.+...++. |+.+++ .|+++++
T Consensus 263 -~~gG~-~l~~~~~~~~---Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 263 -AKGGI-TLAIARELGI---PIKFIG--VGEKAED 290 (306)
T ss_dssp -SCTTH-HHHHHHHHCC---CEEEEE--CSSSGGG
T ss_pred -cchHH-HHHHHHHHCC---CEEEEe--CCCChhh
Confidence 33333 2344445554 555553 3444544
No 271
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=76.63 E-value=1.9 Score=42.10 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=35.4
Q ss_pred cCEEEEEEECC-CCCchhhHHHHHHHHhcCCcEEeeeecCCCCC
Q 008991 45 CQGALLVVDAA-QGVQAQTVANFYLAFESELTIIPVINKIDQPT 87 (547)
Q Consensus 45 aD~ailVvDa~-~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~ 87 (547)
++++++++|.. .|..+...+.+..+.+. +++|+|+||+|...
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 58889999954 88888888888777766 99999999999865
No 272
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=75.38 E-value=5.3 Score=35.91 Aligned_cols=87 Identities=10% Similarity=0.140 Sum_probs=53.6
Q ss_pred HHHHhhcCEEEEEEECCCC--CchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHH----------HhcCCCCc
Q 008991 39 SRSLAACQGALLVVDAAQG--VQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLK----------SMFDLDPS 106 (547)
Q Consensus 39 ~~~l~~aD~ailVvDa~~g--~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~----------~~l~~~~~ 106 (547)
...+..||++|.++|.-.| ....|..-+-.|...|+|++++.+.... . .++.. +.++.+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~d~r~----~---~~~~~~~~d~~g~~vedf~~~~N 134 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTSDRRN----M---REKYGSGVDKDNLRVEGFGLPFN 134 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECSCCSC----H---HHHHTSSBCTTSCBCCCSSCSSC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEcCchh----h---hhhcccccccccccccccCCcch
Confidence 5778899999999996333 4556666667788999999988764311 0 00000 11222222
Q ss_pred cceeccccccccccccHHHHHhhCCC
Q 008991 107 EALLTSAKTGQGLEHVLPAVIERIPP 132 (547)
Q Consensus 107 ~vi~~SAk~g~Gv~~Ll~~l~~~ip~ 132 (547)
-.+.+|+.--.++++++..+...+++
T Consensus 135 LMl~~~~~~~~~~~~~l~~l~~~~~~ 160 (161)
T 2f62_A 135 LMLYDGVEVFDSFESAFKYFLANFPS 160 (161)
T ss_dssp GGGCCSSCEESSHHHHHHHHHHHSCC
T ss_pred hhhhhhheeeCCHHHHHHHHHHhhcC
Confidence 34555655344677788887777654
No 273
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=73.56 E-value=2.8 Score=43.11 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=48.5
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhH-------HHHHHHHhcC--Cc---EEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTV-------ANFYLAFESE--LT---IIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-------~~~~~~~~~~--lp---iIvviNKiDl~ 86 (547)
+.|.+.|||||..... .+..++..||.+|+++....-....+. ..+......+ .+ ++.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 4578899999987643 466678899999999876432111111 1223333333 33 35678887732
Q ss_pred CCCHHHHHHHHHHhcCC
Q 008991 87 TADPDRVKAQLKSMFDL 103 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~~ 103 (547)
.......+++.+.++.
T Consensus 321 -~~~~~~~~~l~~~~g~ 336 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGG 336 (398)
T ss_dssp -HHHHHHHHHHHHHHGG
T ss_pred -hhHHHHHHHHHHHhcc
Confidence 1233455666666653
No 274
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=64.51 E-value=7.5 Score=38.73 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=49.1
Q ss_pred CEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCCCC-C---------HHHHHHHHHHhcCCCCccceecccc
Q 008991 46 QGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQPTA-D---------PDRVKAQLKSMFDLDPSEALLTSAK 114 (547)
Q Consensus 46 D~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~~~-~---------~~~~~~~i~~~l~~~~~~vi~~SAk 114 (547)
+++++|.-+..-...++...+..+...++|+ -+|+|++..... . .....+++.+.++..+.-.++.-+.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~ 302 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKK 302 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 4888888776555566678888888899996 588999986532 1 1233455666665433334455555
Q ss_pred ccccccccH
Q 008991 115 TGQGLEHVL 123 (547)
Q Consensus 115 ~g~Gv~~Ll 123 (547)
.=.|++.|.
T Consensus 303 e~~g~~~L~ 311 (324)
T 3zq6_A 303 EAKGIETLE 311 (324)
T ss_dssp CSCSHHHHH
T ss_pred CCCCHHHHH
Confidence 555655543
No 275
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=63.79 E-value=9.9 Score=41.54 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=38.2
Q ss_pred EEEEEeCCCccc-------------hHHHHHHHHhhc-CEEEEEEECCCCCchhh-HHHHHHHHhcCCcEEeeeecCCCC
Q 008991 22 LLNLIDTPGHVD-------------FSYEVSRSLAAC-QGALLVVDAAQGVQAQT-VANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 22 ~l~liDTPGh~d-------------f~~~~~~~l~~a-D~ailVvDa~~g~~~qt-~~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
.+.|+|.||... ....+..++... ..+++++++......+. ...+..+...+.+.|+|+||.|+.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV 227 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc
Confidence 478999997543 112222333333 45666777655443222 334444444578899999999986
Q ss_pred CC
Q 008991 87 TA 88 (547)
Q Consensus 87 ~~ 88 (547)
..
T Consensus 228 ~~ 229 (608)
T 3szr_A 228 DK 229 (608)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 276
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.71 E-value=3.6 Score=44.94 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=34.0
Q ss_pred CceEEEEEeCCCccchHH------HHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhc
Q 008991 19 SSFLLNLIDTPGHVDFSY------EVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFES 72 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~ 72 (547)
.+..+.|+||||..+... ....+++..-..++|+|+..++..+....+..+.+.
T Consensus 89 ~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 89 PGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp TTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred CCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 456789999999865322 122223332223788888888888887776665443
No 277
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=58.52 E-value=6.7 Score=39.79 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=27.9
Q ss_pred ceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCC
Q 008991 20 SFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQ 56 (547)
Q Consensus 20 ~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~ 56 (547)
.|.+.|||||... ......++..||.+|+++.+..
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCCh
Confidence 6788999999754 3556677888999999998753
No 278
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=56.16 E-value=4.9 Score=43.67 Aligned_cols=43 Identities=12% Similarity=-0.156 Sum_probs=31.7
Q ss_pred hcCEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCC
Q 008991 44 ACQGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQP 86 (547)
Q Consensus 44 ~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~ 86 (547)
.+|.+++|+.+....-..+...+..+...+++ .-+|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 46889998876555455566777777788888 46889999864
No 279
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=52.55 E-value=4.2 Score=39.89 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=11.3
Q ss_pred CCCCCeEEEeCCC--ceEEEEEeCCCccc
Q 008991 7 LNGPGTSEAHNPS--SFLLNLIDTPGHVD 33 (547)
Q Consensus 7 s~~pG~T~~~~~~--~~~l~liDTPGh~d 33 (547)
+++||+|++...- +..+.++||||..+
T Consensus 149 ~~~~g~T~~~~~~~~~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 149 GDRPGITTSQQWVKVGKELELLDTPGILW 177 (282)
T ss_dssp ----------CCEEETTTEEEEECCCCCC
T ss_pred CCCCCeeeeeEEEEeCCCEEEEECcCcCC
Confidence 6789999877421 12578999999864
No 280
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=51.38 E-value=37 Score=34.36 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=52.7
Q ss_pred hhcCEEEEEEECCCCCc-----------hhhHHHHHHHHh-----cCCcE-EeeeecCCCCCCCHHHHHHHHHHhcCCCC
Q 008991 43 AACQGALLVVDAAQGVQ-----------AQTVANFYLAFE-----SELTI-IPVINKIDQPTADPDRVKAQLKSMFDLDP 105 (547)
Q Consensus 43 ~~aD~ailVvDa~~g~~-----------~qt~~~~~~~~~-----~~lpi-IvviNKiDl~~~~~~~~~~~i~~~l~~~~ 105 (547)
.+.|.+|||.++..+-- .++......+.. .++++ =+++|..++.....++..+.+++.++++
T Consensus 252 ~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glP- 330 (349)
T 2obn_A 252 SQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLP- 330 (349)
T ss_dssp HCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSC-
T ss_pred cCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-
Confidence 35689999999877644 333333333332 56774 4778998876555566788888888874
Q ss_pred ccceeccccccccccccHHHHHh
Q 008991 106 SEALLTSAKTGQGLEHVLPAVIE 128 (547)
Q Consensus 106 ~~vi~~SAk~g~Gv~~Ll~~l~~ 128 (547)
+...-..|.+.|++.|.+
T Consensus 331 -----v~d~~r~g~~~l~~~~~~ 348 (349)
T 2obn_A 331 -----CTDVVRFGADVLLDAVMQ 348 (349)
T ss_dssp -----EECHHHHCSHHHHHHHHT
T ss_pred -----EEEEecCCHHHHHHHHhc
Confidence 333334588888888764
No 281
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=50.23 E-value=27 Score=31.26 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=37.6
Q ss_pred HHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHH
Q 008991 40 RSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPD 91 (547)
Q Consensus 40 ~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~ 91 (547)
..+..||++|.++|... ....|..-+-.|...++|++.+.+-.-..+.+..
T Consensus 65 ~~i~~aD~viA~ldg~~-~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~ 115 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPT-IDAGVASEIGVAYAKGIPVVALYTDSRQQGADNH 115 (162)
T ss_dssp HHHHTCSEEEEECCSSS-CCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCH
T ss_pred HHHHHCCEEEEECCCCC-CCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcc
Confidence 56889999999998543 4666777777888999999888776544444433
No 282
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=49.00 E-value=29 Score=33.26 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=48.9
Q ss_pred CceEEEEEeCCCcc-----c---hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEE-eeeecCCCC-CC
Q 008991 19 SSFLLNLIDTPGHV-----D---FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTII-PVINKIDQP-TA 88 (547)
Q Consensus 19 ~~~~l~liDTPGh~-----d---f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiI-vviNKiDl~-~~ 88 (547)
..+.+.++|+||-. + ....+ +-....-+|||+|+..+.-.++...+..+...++++. +|+||+.-. ..
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adl--a~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~ 202 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDV--AVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGL 202 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHH--HHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCH
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHH--HHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhh
Confidence 45778899998742 1 12222 2223567899999987766666666666667788854 788998521 11
Q ss_pred CHHHHHHHHHHh
Q 008991 89 DPDRVKAQLKSM 100 (547)
Q Consensus 89 ~~~~~~~~i~~~ 100 (547)
..+...+.+++.
T Consensus 203 ~~~~~~~~le~~ 214 (251)
T 3fgn_A 203 VAASNRSALARI 214 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHh
Confidence 123334555554
No 283
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=47.69 E-value=24 Score=37.59 Aligned_cols=93 Identities=22% Similarity=0.275 Sum_probs=48.5
Q ss_pred ceEEEEEeCCCccchH----HHHHH---HHh-----hcCEEEEEEECCCCCchhhHHHHHHH-HhcCCcEEeeeecCCCC
Q 008991 20 SFLLNLIDTPGHVDFS----YEVSR---SLA-----ACQGALLVVDAAQGVQAQTVANFYLA-FESELTIIPVINKIDQP 86 (547)
Q Consensus 20 ~~~l~liDTPGh~df~----~~~~~---~l~-----~aD~ailVvDa~~g~~~qt~~~~~~~-~~~~lpiIvviNKiDl~ 86 (547)
++.+.|+||+|..... .++.. .++ ..+-++||+|++.|-.. ....... ...++. .+++||+|-.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~it-gvIlTKLD~t 451 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGLT-GITLTKLDGT 451 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCCS-EEEEECGGGC
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCCC-EEEEEcCCCc
Confidence 3457799999984322 22221 122 25678999999876322 2222222 223444 5689999963
Q ss_pred CCCHHHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 87 TADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 87 ~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
+..-..+ .+...+++ |+.++ -+|+++++|
T Consensus 452 -akgG~~l-si~~~~~~---PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 452 -AKGGVIF-SVADQFGI---PIRYI--GVGERIEDL 480 (503)
T ss_dssp -SCCTHHH-HHHHHHCC---CEEEE--ECSSSGGGE
T ss_pred -ccccHHH-HHHHHHCC---CEEEE--ecCCChhhc
Confidence 2322222 33334454 45553 356666553
No 284
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=45.83 E-value=22 Score=35.92 Aligned_cols=41 Identities=7% Similarity=-0.064 Sum_probs=31.8
Q ss_pred hcCEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCC
Q 008991 44 ACQGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKID 84 (547)
Q Consensus 44 ~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiD 84 (547)
.+|.+++|..+....-..+...+..+...++++ -+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 578899998876544556677777788889885 48899998
No 285
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=45.53 E-value=48 Score=32.85 Aligned_cols=40 Identities=13% Similarity=-0.113 Sum_probs=30.9
Q ss_pred CEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCC
Q 008991 46 QGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQ 85 (547)
Q Consensus 46 D~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl 85 (547)
+.+++|.........++...+..+...++|+ -+|+|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 4788888876655566778888888889995 478999984
No 286
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=44.09 E-value=54 Score=32.95 Aligned_cols=42 Identities=10% Similarity=-0.060 Sum_probs=31.6
Q ss_pred CEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCCC
Q 008991 46 QGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQPT 87 (547)
Q Consensus 46 D~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~~ 87 (547)
+.+++|.-+..-....+...+..+...++|+ -+|+|++....
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~ 274 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAE 274 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCcccc
Confidence 4788887776555556677888888899995 68899998643
No 287
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.46 E-value=35 Score=32.48 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=44.3
Q ss_pred CceEEEEEeCCCccc-------hHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCC
Q 008991 19 SSFLLNLIDTPGHVD-------FSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQP 86 (547)
Q Consensus 19 ~~~~l~liDTPGh~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~ 86 (547)
..+.+.++|.||... ....+.+. ...-+|||+++..|.-.++...+..+...+++.=+|+|+++-.
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~--l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~~ 202 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALK--LKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNN 202 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHH--HTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTTC
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHH--cCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 456788999987531 22233222 2345889999988855566666666677788866889999854
No 288
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics consortium, SGC, alternative splicing, calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens} PDB: 4eza_A
Probab=40.60 E-value=11 Score=31.88 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=30.8
Q ss_pred hhhhhHHHHHhhhhhhccccCeecCHHHHHHhhcc
Q 008991 512 RKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLRV 546 (547)
Q Consensus 512 rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~~ 546 (547)
+=.-||++|.+|+.-|+.++.+.+.=+-|+.+|..
T Consensus 79 ~ldDLLq~Qye~~~~l~lfd~vklNVnlli~LlnK 113 (114)
T 3iez_A 79 NIQDLLQMQYEGVAVMKMFDKVKVNVNLLIYLLNK 113 (114)
T ss_dssp EHHHHHHHHHTTCCEEEEETTEEEEHHHHHHHHHC
T ss_pred eHHHHHHHHHCCCceEEecCcEEEEhHHHHHHHhc
Confidence 44679999999999999999999999999888754
No 289
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=40.51 E-value=22 Score=27.48 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=34.1
Q ss_pred hccCCCCceeeeeeeeeCCEEEEEecccccchhhhhccc
Q 008991 468 KKFIDRQMFEITIQAAIGSKVIARETISAMRKNVLAKCY 506 (547)
Q Consensus 468 k~~i~r~~~~v~~q~~~~~~~~~~~~i~~~~k~v~~k~~ 506 (547)
|+.|-++.++|.+...-|+...-|.|++.++=||-..|+
T Consensus 2 Kk~IHP~y~~v~~~~s~g~~f~t~ST~~~i~vdi~s~~H 40 (73)
T 1nkw_Y 2 QKDLHPKAVPCKIIYQGQVVMETMSTRPEIHVDVWSGVH 40 (73)
T ss_pred CCCCCCCCEEEEEEECCCCEEEEcccCCCEEEEECCCCC
Confidence 556666788899999889999999999999999999985
No 290
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=40.48 E-value=11 Score=40.75 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=30.4
Q ss_pred CEEEEEEECCCCCchhhHHHHHHHHhcCCc-EEeeeecCCCC
Q 008991 46 QGALLVVDAAQGVQAQTVANFYLAFESELT-IIPVINKIDQP 86 (547)
Q Consensus 46 D~ailVvDa~~g~~~qt~~~~~~~~~~~lp-iIvviNKiDl~ 86 (547)
+.+++|+.+....-..+...+..+...+++ .-+|+|+++..
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 368888887665556667777777788887 44779999854
No 291
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=40.16 E-value=44 Score=26.34 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=35.9
Q ss_pred ecCccccCCEEEEec-CCCee--EEEEEEeecCCccccccc-ccCcEEEEEecccccccccccCcc
Q 008991 163 VDGTLRKGDKISSAA-TGQAY--EIVDVGIMHPELTPTGVL-LTGQVGYVVTGMRSTKEARIGDTL 224 (547)
Q Consensus 163 ~~G~lk~gd~v~~~~-~~~~~--~v~~i~~~~~~~~~v~~~-~aGdig~i~~glk~~~~~~~Gdtl 224 (547)
....+.+||.|.++. .|... ++.++ ...+-.+++.| .+|+++++... ..+..||.|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m--~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dil 85 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKI--WDEDGNELDAARHPLQIVKFKVK----RPLFPYNMM 85 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCE--EETTSCEESCBCSTTCEEEEECS----SCCCTTCEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHe--EcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEE
Confidence 467999999998764 44343 34333 22344678888 89999987531 345666654
No 292
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=36.84 E-value=4.8 Score=39.00 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=14.0
Q ss_pred CCCCCeEEEeCC--CceEEEEEeCCCccch
Q 008991 7 LNGPGTSEAHNP--SSFLLNLIDTPGHVDF 34 (547)
Q Consensus 7 s~~pG~T~~~~~--~~~~l~liDTPGh~df 34 (547)
+++||+|+.... .+..+++|||||..+.
T Consensus 128 ~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 128 GAQPGITKGIQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp -------CCSCEEECTTSCEEESSCEECCC
T ss_pred CCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence 578999886531 1235789999998764
No 293
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=36.13 E-value=49 Score=29.43 Aligned_cols=43 Identities=9% Similarity=-0.093 Sum_probs=35.1
Q ss_pred HHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCC
Q 008991 39 SRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKID 84 (547)
Q Consensus 39 ~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiD 84 (547)
...+..||++|.++| ..+..|..-+-.|...++|++++.++.+
T Consensus 72 ~~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l~~~~~ 114 (165)
T 2khz_A 72 LNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEEECTTT
T ss_pred HHHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEEEcCCC
Confidence 356889999999886 5677787777888999999999877664
No 294
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=34.29 E-value=63 Score=31.72 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=49.3
Q ss_pred eEEEEEeCCCccchH----HHHH---HHHh-----hcCEEEEEEECCCCCchhhHHHHHH-HHhcCCcEEeeeecCCCCC
Q 008991 21 FLLNLIDTPGHVDFS----YEVS---RSLA-----ACQGALLVVDAAQGVQAQTVANFYL-AFESELTIIPVINKIDQPT 87 (547)
Q Consensus 21 ~~l~liDTPGh~df~----~~~~---~~l~-----~aD~ailVvDa~~g~~~qt~~~~~~-~~~~~lpiIvviNKiDl~~ 87 (547)
+.+.++||+|..+.. .+.+ .+++ ..+.+++++|+..+.... ..+.. ....++ .++++||.|...
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~--~~~~~~~~~~~~-t~iivTh~d~~a 261 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL--EQAKKFHEAVGL-TGVIVTKLDGTA 261 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH--HHHHHHHHHHCC-SEEEEECTTSSC
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH--HHHHHHHHHcCC-cEEEEECCcccc
Confidence 345699999975322 2221 1211 367789999998764322 22222 223355 577899998642
Q ss_pred CCHHHHHHHHHHhcCCCCccceecccccccccccc
Q 008991 88 ADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHV 122 (547)
Q Consensus 88 ~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~L 122 (547)
..-.+. .+...++. |+.+++ +|+++++|
T Consensus 262 -~gg~~l-~i~~~~~~---pi~~ig--~Ge~~~dl 289 (304)
T 1rj9_A 262 -KGGVLI-PIVRTLKV---PIKFVG--VGEGPDDL 289 (304)
T ss_dssp -CCTTHH-HHHHHHCC---CEEEEE--CSSSTTCE
T ss_pred -cccHHH-HHHHHHCC---CeEEEe--CCCChhhc
Confidence 222222 33444554 455544 55555553
No 295
>1x0h_A P195, RAS GTPase-activating-like protein iqgap1; cell adhesion, beta-sandwich, protein-protein interaction, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.332.1.1
Probab=33.39 E-value=15 Score=30.81 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=30.5
Q ss_pred hhhhhHHHHHhhhhhhccccCeecCHHHHHHhhc
Q 008991 512 RKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLR 545 (547)
Q Consensus 512 rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~ 545 (547)
+=.-||++|.+|+.-|+-+++|++.=+-++.+|.
T Consensus 67 ~ldDLLe~Q~~~~~~l~lf~~v~lnVn~ll~Lln 100 (112)
T 1x0h_A 67 HYQDLLQLQYEGVAVMKLFDRAKVNVNLLIFLLN 100 (112)
T ss_dssp CHHHHHHHHHHCCCEEEETTTEEEEHHHHHHHHH
T ss_pred eHHHHHHHhhCCCceEeecCcEEEeHHHHHHHHH
Confidence 5578999999999999999999999999988874
No 296
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=32.53 E-value=57 Score=28.81 Aligned_cols=40 Identities=10% Similarity=-0.084 Sum_probs=32.9
Q ss_pred HHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeee
Q 008991 39 SRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVIN 81 (547)
Q Consensus 39 ~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviN 81 (547)
...+..||+++.++| .....|..-+-.|...|+|++.+.+
T Consensus 63 ~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 456889999999877 5677788778888999999888776
No 297
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=31.87 E-value=20 Score=36.33 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=27.2
Q ss_pred CceEEEEEeCCCccchHHHHHHHHhhcCEEEEEEECCC
Q 008991 19 SSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQ 56 (547)
Q Consensus 19 ~~~~l~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~ 56 (547)
..|.+.++|||... ...+...+..||.+++|+.+..
T Consensus 258 ~~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCCc
Confidence 36788999999543 3466778899999999987643
No 298
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=31.62 E-value=83 Score=28.10 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=31.9
Q ss_pred HHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEee
Q 008991 40 RSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPV 79 (547)
Q Consensus 40 ~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvv 79 (547)
..+..||++|.++|.. .....|..-+-.|...++|++.+
T Consensus 77 ~~i~~aD~vVA~ldg~-~~D~GTa~EiGyA~algKPVv~l 115 (167)
T 1s2d_A 77 TGISNATCGVFLYDMD-QLDDGSAFXIGFMRAMHKPVILV 115 (167)
T ss_dssp HHHHHCSEEEEEEESS-SCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCEEEEECCCC-CCCCCceeehhhHhhCCCeEEEE
Confidence 4588999999999973 45677777777889999998887
No 299
>3isu_A RAS GTPase-activating-like protein iqgap3; structural genomics, structural genomics consortium (SGC), RGC domain, calmodulin-binding; 1.88A {Homo sapiens}
Probab=29.85 E-value=21 Score=30.41 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.9
Q ss_pred hhhhhHHHHHhhhhhhccccCeecCHHHHHHhhc
Q 008991 512 RKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLR 545 (547)
Q Consensus 512 rk~kll~~q~~gk~~~~~~~~~~~~~~~f~~~~~ 545 (547)
+=.-||++|.+|+.-|+.++.+.+.=+-++.+|.
T Consensus 82 ~ldDLLq~Qye~~~~~~lfd~vklNVnlll~Lln 115 (121)
T 3isu_A 82 HYQDLLQLQYEGVAVMKLFNKAKVNVNLLIFLLN 115 (121)
T ss_dssp EHHHHHHHHHTTCCEEEETTTEEEEHHHHHHHHH
T ss_pred eHHHHHHHHHcCCceEEecCcEEEeHHHHHHHHH
Confidence 3467999999999999999999999988888874
No 300
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=27.96 E-value=75 Score=27.26 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=19.7
Q ss_pred cCccccCCEEEEecCCCeeEEEEEE
Q 008991 164 DGTLRKGDKISSAATGQAYEIVDVG 188 (547)
Q Consensus 164 ~G~lk~gd~v~~~~~~~~~~v~~i~ 188 (547)
+|.+++||++.+. ++.|+|..||
T Consensus 52 ~~~i~~Gd~l~i~--~~~Y~ItaVG 74 (129)
T 2f9h_A 52 QVTLAEGDHLKIG--DTNYTITKVG 74 (129)
T ss_dssp GCCCCTTCEEEET--TEEEEEEEEC
T ss_pred cCCcCCCCEEEEC--CEEEEEEEEh
Confidence 3899999999985 6888998887
No 301
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=27.49 E-value=1.9e+02 Score=28.58 Aligned_cols=41 Identities=12% Similarity=-0.080 Sum_probs=30.4
Q ss_pred CEEEEEEECCCCCchhhHHHHHHHHhcCCcE-EeeeecCCCC
Q 008991 46 QGALLVVDAAQGVQAQTVANFYLAFESELTI-IPVINKIDQP 86 (547)
Q Consensus 46 D~ailVvDa~~g~~~qt~~~~~~~~~~~lpi-IvviNKiDl~ 86 (547)
..+++|..+..-....+...+..+...|+|+ -+|+|++..+
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p 264 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFP 264 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCc
Confidence 4677777665545556678888888999995 5889998743
No 302
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=27.34 E-value=59 Score=25.29 Aligned_cols=48 Identities=13% Similarity=0.013 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHHhcCCcEEeeeecCCC
Q 008991 36 YEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAFESELTIIPVINKIDQ 85 (547)
Q Consensus 36 ~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~~lpiIvviNKiDl 85 (547)
.++..++..-..-++++..+... .+. ....++...++|++.+-+|.+|
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~--~~~~~i~~lc~~~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP--ILTSSVVSLAEDQGISVSMVESMKKL 65 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH--HHHHHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH--HHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 46777888877777787766543 444 4446678889999888777554
No 303
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=23.77 E-value=76 Score=33.52 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccceeccccccccccccHHHHHhhCC
Q 008991 63 VANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEALLTSAKTGQGLEHVLPAVIERIP 131 (547)
Q Consensus 63 ~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~vi~~SAk~g~Gv~~Ll~~l~~~ip 131 (547)
..|.+.++.+|+|+++.+|+........-+.+.+..+..|... .+...=++-|+|-.+|-+.+++.+.
T Consensus 350 ~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~-~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 350 RVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRV-AVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp HHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEE-EEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCE-EEechhhccchhHHHHHHHHHHHhc
Confidence 4667778889999999999976432212222334444445421 1222335678899999888888764
No 304
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=22.42 E-value=1e+02 Score=26.38 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCccc--eecccc
Q 008991 37 EVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPSEA--LLTSAK 114 (547)
Q Consensus 37 ~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~~v--i~~SAk 114 (547)
++..+++.-..-++++..+.....-......++...++|++.+.+|.+ +-..+|.. ..+ +.+-..
T Consensus 48 ~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~e------------LG~a~G~~-~~v~~vaI~d~ 114 (135)
T 2aif_A 48 EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVA------------LGRACGVS-RPVIAAAITSK 114 (135)
T ss_dssp HHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHH------------HHHHTTCS-SCCSEEEEECC
T ss_pred HHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHH------------HHHHhCCC-CcEEEEEEEcC
Confidence 556667777777777766544332235566778889999887766543 44556664 232 222222
Q ss_pred ccccccccHHHHHhhC
Q 008991 115 TGQGLEHVLPAVIERI 130 (547)
Q Consensus 115 ~g~Gv~~Ll~~l~~~i 130 (547)
.+..+.++++.+.+.+
T Consensus 115 ~~s~i~~~~~~~~~~~ 130 (135)
T 2aif_A 115 DGSSLSSQITELKDQI 130 (135)
T ss_dssp TTCTTHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3344556666665544
No 305
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.22 E-value=1.4e+02 Score=23.93 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCEEEEEEECCCCCchhhH-HHHHHHHhcCCcEEee-eecCCC
Q 008991 36 YEVSRSLAACQGALLVVDAAQGVQAQTV-ANFYLAFESELTIIPV-INKIDQ 85 (547)
Q Consensus 36 ~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~~lpiIvv-iNKiDl 85 (547)
.++..+++.-..-++++..+. ...+. ....++...++|++.+ .+|.+|
T Consensus 21 ~~v~kai~~gka~lViiA~D~--~~~~~~~i~~~c~~~~ip~~~~~~s~~eL 70 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNA--PKEIKDDIYYYAKLSDIPVYEFEGTSVEL 70 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCC--CHHHHHHHHHHHHHTTCCEEEECCCSCGG
T ss_pred HHHHHHHHcCCccEEEEeCCC--CHHHHHHHHHHHHHcCCCEEEeCCCHHHH
Confidence 466777777666666666653 34454 4446678899997655 888876
No 306
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=22.15 E-value=4.1e+02 Score=23.45 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=40.5
Q ss_pred EEEeCCCccchHHHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEe
Q 008991 24 NLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIP 78 (547)
Q Consensus 24 ~liDTPGh~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIv 78 (547)
.+-.||. .++...+..-+..+|+.+++. ....+..|..-...|.+++.|+.+
T Consensus 54 ~L~E~~~-~~y~~Rt~~NV~DSDgTLI~~--~g~lsGGT~lT~~~a~~~~KP~l~ 105 (158)
T 3imk_A 54 QLQEMPT-SDYSKRTEKNVLDSDGTLIIS--HGILKGGSALTEFFAEQYKKPCLH 105 (158)
T ss_dssp CCEECSS-CCHHHHHHHHHHTSSEEEEEE--SSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred cccccCC-CCHHHHHHHhhhhcCeEEEEe--cCCCCCchHHHHHHHHHhCCCEEE
Confidence 3556665 456777888889999988876 346788888888999999999775
No 307
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=21.27 E-value=36 Score=23.05 Aligned_cols=14 Identities=50% Similarity=0.760 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHhhh
Q 008991 511 TRKRKLLEKQKEGK 524 (547)
Q Consensus 511 ~rk~kll~~q~~gk 524 (547)
-|.+.+|++||++.
T Consensus 18 ~rRr~~L~~QK~~R 31 (40)
T 2p8q_B 18 ERRRRLLELQKSKR 31 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677999999853
No 308
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=21.10 E-value=96 Score=26.63 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCCCCCCHHHHHHHHHHhcCCCCc-cceecccc
Q 008991 36 YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQPTADPDRVKAQLKSMFDLDPS-EALLTSAK 114 (547)
Q Consensus 36 ~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl~~~~~~~~~~~i~~~l~~~~~-~vi~~SAk 114 (547)
.++..+++.-.+-++++..+.....-......++...++|++.+.+|.+ +-...|.... .++.+...
T Consensus 38 ~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e------------LG~a~G~~~~~s~vaI~d~ 105 (134)
T 2ale_A 38 NEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVA------------LGRACGVSRPVIAASITTN 105 (134)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHH------------HHHHTTCSSCCSEEEEECC
T ss_pred hHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH------------HHHHhCCCCCeEEEEEEcC
Confidence 4677778887888888877654432344555778889999888866654 3444555321 12222222
Q ss_pred ccccccccHHHHHhh
Q 008991 115 TGQGLEHVLPAVIER 129 (547)
Q Consensus 115 ~g~Gv~~Ll~~l~~~ 129 (547)
.+.++..+++.+...
T Consensus 106 ~~s~~~~l~~~i~~~ 120 (134)
T 2ale_A 106 DASAIKTQIYAVKDK 120 (134)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 333566666665543
No 309
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=20.65 E-value=1.1e+02 Score=27.01 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=32.5
Q ss_pred HHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeec
Q 008991 40 RSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINK 82 (547)
Q Consensus 40 ~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNK 82 (547)
..+..||++|.++|..+ ....|..-+-.|...++|++.+-.+
T Consensus 74 ~~i~~aD~vvA~ldg~~-~D~GT~~EiGyA~A~gkPVv~~~~~ 115 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDE-EDVGLGMELGYALSQGKYVLLVIPD 115 (157)
T ss_dssp HHHHTSSEEEEECCGGG-CCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred HHHHhCCEEEEEcCCCC-CCccHHHHHHHHHHCCCeEEEEEcC
Confidence 55788999999998532 4566777777889999998887644
No 310
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=20.15 E-value=94 Score=26.37 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCEEEEEEECCCCCchhhHHHHHHHHhcCCcEEeeeecCCC
Q 008991 36 YEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESELTIIPVINKIDQ 85 (547)
Q Consensus 36 ~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~lpiIvviNKiDl 85 (547)
.++..++..-.+-++++..+..+.........++..+++|++.+-+|.+|
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASL 79 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHH
Confidence 46677777766666666655433222344556788899999887766553
Done!