BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008992
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
V V +L S+H +T P EE TP +S + Y +G ++R L + L++DL
Sbjct: 376 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 428
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
V V +L S+H +T P EE TP +S + Y +G ++R L + L++DL
Sbjct: 377 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 429
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
V V +L S+H +T P EE TP +S + Y +G ++R L + L++DL
Sbjct: 376 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 428
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDL 281
V V +L S+H +T P EE TP +S + Y +G ++R L + L++DL
Sbjct: 420 VMAVDALASSHPLTTPAEEVNTPAQISEMFDSISY-----SKGASVIRMLSNFLTEDL 472
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
KQRP A S+ T K+A LC +NA + LLKAL PK+
Sbjct: 364 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 403
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
KQRP A S+ T K+A LC +NA + LLKAL PK+
Sbjct: 360 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 399
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
KQRP A S+ T K+A LC +NA + LLKAL PK+
Sbjct: 366 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 405
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
KQRP A S+ T K+A LC +NA + LLKAL PK+
Sbjct: 359 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 398
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
KQRP A S+ T K+A LC +NA + LLKAL PK+
Sbjct: 364 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 403
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
KQRP A S+ T K+A LC +NA + LLKAL PK+
Sbjct: 364 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 403
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 352 KQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKI 394
KQRP A S+ T K+A LC +NA + LLKAL PK+
Sbjct: 365 KQRPREEQAESDGTAEAEKVAFLCGINAGD---LLKALLKPKV 404
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 12/163 (7%)
Query: 224 VRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPS 283
V V +L S+H ++ P E TP +S + Y +G +LR L S LS+
Sbjct: 379 VMAVDALASSHPLSTPASEINTPAQISELFDAISY-----SKGASVLRMLSSFLSE---- 429
Query: 284 DLQKLRCKVAFHALRFAPPI-LQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPE 342
D+ K H + I L L + L E + ++ L +R + W P
Sbjct: 430 DVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVIT 489
Query: 343 YDEMISNERKQRPELLTARSNMTY-HERKLAGLCPLNAVEVTR 384
D + Q LL SN+T E + P+ ++ R
Sbjct: 490 VDTS-TGTLSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGR 531
>pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With
Broad Spectrum Potency And Antibacterial Efficacy In
Vivo
Length = 318
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 491 HYFLNSSLPEAEFNRIIKELHSESLGQPELRTSKA 525
H N S+P++E++R+ +L + L PE TS +
Sbjct: 23 HVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDS 57
>pdb|3UQ8|A Chain A, Structure Of Adenylation Domain Of Haemophilus Influenzae
Dna Ligases Bound To Nad+ In Adenylated State
Length = 322
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 491 HYFLNSSLPEAEFNRIIKELHSESLGQPELRTSKA 525
H N S+P++E++R+ +L + L PE TS +
Sbjct: 21 HVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDS 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,630,501
Number of Sequences: 62578
Number of extensions: 649057
Number of successful extensions: 1365
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 25
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)