BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008992
         (547 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  223 bits (567), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/433 (32%), Positives = 217/433 (50%), Gaps = 22/433 (5%)

Query: 126 EFWKQPDGMGYRPCLHFSREYRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARI 185
           E W+     G+RP    S   R       K+   YL V  +GG+NQQR+ I +AV+ ARI
Sbjct: 61  ELWESAKSGGWRP----SSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARI 116

Query: 186 LGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEK-- 243
           + A LV+P L  N  W D+S F  I+D+EHF   L  DV+IV  +P  H   +  + K  
Sbjct: 117 MNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAF 176

Query: 244 --RTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPS-DLQKLRCKVAFHALRFA 300
             R P     +W     L+ +     + L     RL++++ + + Q+LRC+V +HALRF 
Sbjct: 177 QIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFK 236

Query: 301 PPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLP--GPEYDEMISNERKQRPELL 358
           P I++L   + +++RS+G ++S+HLR E D+    GC     PE  +++   RK+     
Sbjct: 237 PHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKEN---- 292

Query: 359 TARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEF 418
            A   + Y+ER+  G CPL   EV  +L+A+      RIY A GE  GG++ + P  T F
Sbjct: 293 FADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLF 352

Query: 419 PHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGG--NMGHAIQGHRAYA 476
           P L N   +  P E     ++  + +A+DY+V   SDIFMP++ G  N  + + GHR Y 
Sbjct: 353 PRLDNHSSVD-PSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYY 411

Query: 477 GHMKYITPNKRQMLHYFL-NSSLPEAEFNRIIKELH-SESLGQPELRTSKAGRDVTKYPV 534
           G    I P+++ +   F+       A F   ++ +    + G P  R S        +  
Sbjct: 412 GFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSW-- 469

Query: 535 PECMCNDSHAHSS 547
           PEC C  +   SS
Sbjct: 470 PECFCQMNPKKSS 482


>sp|A1KSS7|DNLJ_NEIMF DNA ligase OS=Neisseria meningitidis serogroup C / serotype 2a
           (strain ATCC 700532 / FAM18) GN=ligA PE=3 SV=1
          Length = 841

 Score = 32.7 bits (73), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 476 AGHMKYITP--NKRQMLHYFLNS-SLPEAEFNRIIKELHSESLGQPELR 521
           A H++++T   N+    +Y L++ S+P+AE++++ +EL +  L  PEL+
Sbjct: 27  AQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELK 75


>sp|A6TR78|MUTL_ALKMQ DNA mismatch repair protein MutL OS=Alkaliphilus metalliredigens
           (strain QYMF) GN=mutL PE=3 SV=1
          Length = 637

 Score = 32.3 bits (72), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 211 FDLEHF--KSVLANDVRIVSSLPSTH-IMTRPVEEKRTPLHVSPQWIRARYLRRLNREGV 267
           F+LE F   S++   V ++   P  +  +   +++ +   HV P +IR + ++R  +E +
Sbjct: 528 FELEAFGQNSIIIRAVPLLLDKPKDYNFIFELIDQVKNEKHVKPDYIREKIIQRSCKEAI 587

Query: 268 LLLRGLDSRLSKDLPSDLQKLR 289
             +  LD +  + L  DL+KL 
Sbjct: 588 KAMDILDIQEIQQLIRDLEKLE 609


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,005,418
Number of Sequences: 539616
Number of extensions: 9096298
Number of successful extensions: 22862
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22856
Number of HSP's gapped (non-prelim): 6
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)