Query 008992
Match_columns 547
No_of_seqs 186 out of 418
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 2E-14 6.8E-19 149.5 14.5 297 156-480 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 1.1E-10 3.6E-15 121.0 15.2 277 156-477 6-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.9 0.0013 4.5E-08 71.4 22.3 253 157-476 144-420 (526)
4 2hhc_A NODZ, nodulation fucosy 97.8 0.00025 8.5E-09 71.1 13.6 256 157-470 3-294 (330)
5 3l32_A Phosphoprotein; antipar 32.9 18 0.00063 27.2 1.6 26 296-321 2-27 (45)
6 1l2m_A REP protein; A+B fold, 17.9 1.2E+02 0.004 27.0 4.2 29 374-403 17-45 (118)
7 2ve7_A Kinetochore protein HEC 17.3 53 0.0018 33.2 2.1 41 380-450 71-111 (315)
8 2g7j_A Putative cytoplasmic pr 16.8 51 0.0017 29.3 1.5 26 377-406 3-28 (124)
9 1wgl_A TOLL-interacting protei 15.6 30 0.001 27.1 -0.2 49 408-461 10-58 (59)
10 1e2t_A NAT, N-hydroxyarylamine 15.4 71 0.0024 31.6 2.4 30 369-406 66-99 (284)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.56 E-value=2e-14 Score=149.45 Aligned_cols=297 Identities=16% Similarity=0.195 Sum_probs=169.8
Q ss_pred CCCcEEEEEE-cC-chhhHHHHHHHHHHHHHHhCCe----EeccccccccccCC------CCCCcCCCChHHHHHhccCC
Q 008992 156 DRRKYLLVVV-SG-GMNQQRNQIVDAVVIARILGAA----LVVPILQVNVIWGD------ESEFSDIFDLEHFKSVLAND 223 (547)
Q Consensus 156 ~snGYL~V~~-nG-GLNQqR~~IcDaVaVARiLNAT----LVlP~L~~~s~W~D------~S~F~DIFD~dhFI~~L~~d 223 (547)
..++||+-.. .| |.|.||...-.|.++|+.||.| ||||-...-.=|.- .-.|++.||++++. ..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----KN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----TT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----hh
Confidence 4689999876 45 8999999999999999999999 99996643222432 23699999998753 34
Q ss_pred cEEe------ccC-----cccc-----cc-------cCCccc-----------ccCCCCCChhHHHHH------------
Q 008992 224 VRIV------SSL-----PSTH-----IM-------TRPVEE-----------KRTPLHVSPQWIRAR------------ 257 (547)
Q Consensus 224 VrIV------k~L-----P~~~-----~~-------~~~~~~-----------~~vp~~~sp~~y~~~------------ 257 (547)
|+|| +++ |..+ .. ...... ...-+...|.|-...
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 4554 111 1000 00 000000 000000122331111
Q ss_pred -----HHHhhhhc---ceEEEeccCccccCCCC-hhhhhhhhhhcccccccChhHHHHHHHHHHHHHhcCCeEEeeccch
Q 008992 258 -----YLRRLNRE---GVLLLRGLDSRLSKDLP-SDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRME 328 (547)
Q Consensus 258 -----vlP~L~k~---~VI~l~~~d~RLa~~lP-~diQrLRCrvnf~ALrF~p~I~~Lg~~LV~RmR~~GpyiALHLR~E 328 (547)
+.|.+.+. .-+-+..+...|+.-.. .+...+| ..|+|++.|.+.|++.++..- +++|+++|+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~ 249 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQ 249 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecccc
Confidence 12333222 12222233333332211 2233333 479999999999999988765 568999999999
Q ss_pred hhhhhhhcCCCCchhhHHHHHHHhhccccccccCCCChHHHhhCCCCCCCHHHHHHHHHHcCCCCCcEEEEeecccCCcc
Q 008992 329 KDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGK 408 (547)
Q Consensus 329 ~DMlAfsgC~~g~e~~e~l~~~R~~~~~~~~~~~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~IYlAaGeiyGg~ 408 (547)
.|+... |........ .. ..--++..+.... -....+|-.++-+..+.+.|.=.+-+.||||+-+ .+
T Consensus 250 ~dw~~~--~~~~~~~~~--~~--y~~~H~Rr~d~~~-----~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~ 315 (408)
T 4ap5_A 250 EDWMKM--KVKLGSALG--GP--YLGVHLRRKDFIW-----GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA---VR 315 (408)
T ss_dssp SSGGGC--CCCTTCBCC--EE--EEEEEECCTTTTT-----TTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC---CH
T ss_pred hhHhhh--hcccccccC--CC--ccccccccccchh-----hhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---ch
Confidence 988764 443210000 00 0000110000000 0112334333333333333322234579999865 34
Q ss_pred ccccchHhhCCCceecccCCCcccccccccchhhhhHhhhhhhcCCceeeeCCCCchhhhhhhhccccCCCc
Q 008992 409 EALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMK 480 (547)
Q Consensus 409 ~~L~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~k 480 (547)
..+..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus 316 ~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 316 KEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp HHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred hHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 456788999997753222 12333333 235679999999999999999999999999999999999864
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.22 E-value=1.1e-10 Score=121.00 Aligned_cols=277 Identities=17% Similarity=0.273 Sum_probs=161.9
Q ss_pred CCCcEEEE-EEcCchhhHHHHHHHHHHHHHHhCCeEeccccccccccC-CCCCCcCCCChHHHHHhccCCcEEec-----
Q 008992 156 DRRKYLLV-VVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWG-DESEFSDIFDLEHFKSVLANDVRIVS----- 228 (547)
Q Consensus 156 ~snGYL~V-~~nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~-D~S~F~DIFD~dhFI~~L~~dVrIVk----- 228 (547)
.+||||+- .|-|-..+|-....-+.+.|+.||.|||||-+-.-..-+ ---.|++.|+++. |+..-|||.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~----l~~yhrvi~me~Fm 81 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGT----VAKYTRVVTMQEFT 81 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHH----HTTTSCEECHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCcccccchhheeecch----hhhhceeeeHHHHH
Confidence 36999998 699999999999999999999999999999754222111 1124888888765 333334441
Q ss_pred -cC-----ccccc-----c-c--------CCccc-------------ccCCCCCC----h-----hH----HHHHHHHhh
Q 008992 229 -SL-----PSTHI-----M-T--------RPVEE-------------KRTPLHVS----P-----QW----IRARYLRRL 262 (547)
Q Consensus 229 -~L-----P~~~~-----~-~--------~~~~~-------------~~vp~~~s----p-----~~----y~~~vlP~L 262 (547)
+| |.+-. + . .+... ..|....+ + +| +.++....+
T Consensus 82 ~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~ 161 (362)
T 3zy2_A 82 KKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKF 161 (362)
T ss_dssp HHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHS
T ss_pred HHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhC
Confidence 11 11100 0 0 00000 00111000 0 11 122222221
Q ss_pred --hhcceEEEeccCccccCCCC--hhhhhhhhhhcccccccChhHHHHHHHHHHHHHhcCCeEEeeccchhhhhhhhcCC
Q 008992 263 --NREGVLLLRGLDSRLSKDLP--SDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCL 338 (547)
Q Consensus 263 --~k~~VI~l~~~d~RLa~~lP--~diQrLRCrvnf~ALrF~p~I~~Lg~~LV~RmR~~GpyiALHLR~E~DMlAfsgC~ 338 (547)
.+|-|+.|++.-. ..| .+-..|+ .-|+++++|.+.|++.|+.--. +||||+|||-=.|+.-. |.
T Consensus 162 p~~~~pVlAf~gaPa----~FPv~~e~r~Lq-----kYm~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~a--C~ 229 (362)
T 3zy2_A 162 PSEEYPVLAFSSAPA----PFPSKGKVWSIQ-----KYLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVRV--CE 229 (362)
T ss_dssp CTTTCSEEEESSCSS----CSSCCGGGGGGG-----GGCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHHH--HH
T ss_pred CcccCceEeecCCCC----CCCcChhhHhHH-----HhccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHHH--Hh
Confidence 3678998887421 123 2211111 4699999999999999888443 49999999999999876 87
Q ss_pred CCchhh--HHHHHHHhhccccc---cccCCCChHHHhhCCCCCCCHH----HHHHHHHHcCCCCCcEEEEeecccCCccc
Q 008992 339 PGPEYD--EMISNERKQRPELL---TARSNMTYHERKLAGLCPLNAV----EVTRLLKALGAPKIARIYWAGGEPLGGKE 409 (547)
Q Consensus 339 ~g~e~~--e~l~~~R~~~~~~~---~~~~~i~~~~~R~~G~CPLTPe----Evgl~LraLGf~~~T~IYlAaGeiyGg~~ 409 (547)
+-+..+ ...+ .+... ..+..+.. ..|==+-+ .|..+++.++.+ .||||+-. +.
T Consensus 230 hlk~~~~~~lfa-----SPQC~Gy~~~~~~lt~------emClPSle~I~rqIk~~vk~~~lk---sVFIATDa----~~ 291 (362)
T 3zy2_A 230 HIDTTTNRPLFA-----SEQCLGEGHHLGTLTK------EICSPSKQQILEQIVEKVGSIGAK---SVFVASDK----DH 291 (362)
T ss_dssp TCCTTTCCCCTT-----THHHHCGGGTTCCCCH------HHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESS----CC
T ss_pred hhccccCccccc-----CCcccCCcccCcccch------hccCCCHHHHHHHHHHHHHhcCCc---EEEEecCC----HH
Confidence 641100 0000 00000 00000100 12311222 345556666544 89999965 34
Q ss_pred cccchHhhCCCceecccCCCcccccccccchhhhhHhhhhhhcCCceeeeCCCCchhhhhhhhccccC
Q 008992 410 ALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAG 477 (547)
Q Consensus 410 ~L~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G 477 (547)
.+.-|++.|+..-. .+.+ +.| . .|+||-+||.+||+||+|..++|+..|.-.|--.|
T Consensus 292 ~~~ELk~~L~~~~v--~vv~---~~p---e---~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 292 MIDEINEALKPYEI--EAHR---QEP---D---DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp CHHHHHHHHGGGTC--CEEC---CSS---C---CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhccCc--eEEE---eCC---c---hhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 56778888874210 0110 111 0 79999999999999999999999999999998888
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.88 E-value=0.0013 Score=71.45 Aligned_cols=253 Identities=15% Similarity=0.173 Sum_probs=142.4
Q ss_pred CCcEEEEEE--cCchhhHHHHHHHHHHHHHHhCCeEeccccccccccCC-CCCCcCCCChHHHHHhccCCcEEeccCccc
Q 008992 157 RRKYLLVVV--SGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGD-ESEFSDIFDLEHFKSVLANDVRIVSSLPST 233 (547)
Q Consensus 157 snGYL~V~~--nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~D-~S~F~DIFD~dhFI~~L~~dVrIVk~LP~~ 233 (547)
+..||+... ..|+..+-..++=+..+|..+|.|||+-.= . |.- ...|+++|+. +...+... |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~---~-w~Y~~g~w~~yF~P--~s~~C~~~-------~~- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQ---N-WRYATGGWETVFRP--VSETCTDR-------SG- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECT---T-CSSCTTCGGGTBCC--SCSSCCCC-------CC-
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECC---C-CCcCCCCHHHhhhC--cCccccCC-------Cc-
Confidence 358999876 579999999999999999999999999432 2 442 2478888864 11111110 00
Q ss_pred ccccCCcccccCCCCCChhHHHHHHHHhhhhcceEEEeccC--ccc---cC-CCChh----hhhhhh-------hhcc-c
Q 008992 234 HIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLD--SRL---SK-DLPSD----LQKLRC-------KVAF-H 295 (547)
Q Consensus 234 ~~~~~~~~~~~vp~~~sp~~y~~~vlP~L~k~~VI~l~~~d--~RL---a~-~lP~d----iQrLRC-------rvnf-~ 295 (547)
.....|-.... -..+.||.+...+ ++. .. .+|.+ ++++.- ...+ .
T Consensus 210 --------------~~~~~w~~~~~---~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~y 272 (526)
T 2de0_X 210 --------------ISTGHWSGEVK---DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKY 272 (526)
T ss_dssp --------------SCCCBCCCTTG---GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------------cccCCCCCccc---CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHH
Confidence 00011111000 1235555543332 111 11 24433 233320 0011 1
Q ss_pred ccccChhHHHHHHHHHHHHHhcCCeEEeeccchhhhhhhhcCCCCchhhHHHHHHHhhccccccccCCCChHHHhhCCCC
Q 008992 296 ALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLC 375 (547)
Q Consensus 296 ALrF~p~I~~Lg~~LV~RmR~~GpyiALHLR~E~DMlAfsgC~~g~e~~e~l~~~R~~~~~~~~~~~~i~~~~~R~~G~C 375 (547)
-+|++++|++..+.+.+.+.-.+|.|+||.|-= |-+..-. .+.+- ++ .++ ....+.
T Consensus 273 l~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E~-~~~~~-~~---Y~~-~v~~~~----------------- 328 (526)
T 2de0_X 273 LIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTEA-AFHPI-EE---YMV-HVEEHF----------------- 328 (526)
T ss_dssp HTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------CC-CSCSH-HH---HHH-HHHHHH-----------------
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcccc-ccCCH-HH---HHH-HHHHHH-----------------
Confidence 389999999999999988766889999999953 2221100 00010 00 111 110111
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEeecccCCccccccchHhhCCCc--eecccCCC-cccccccccchhhhhHhhhhhhc
Q 008992 376 PLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHL--YNKEDLAL-PGELEPFANKASLMAAIDYIVSE 452 (547)
Q Consensus 376 PLTPeEvgl~LraLGf~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl--~tKe~Las-~eEL~pF~~~ss~~AALDYiVcl 452 (547)
..|+....+..+.||||+-+ ...++-+++.||+. ++-..... .+.-..+...+...+.+|.++.+
T Consensus 329 --------~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs 396 (526)
T 2de0_X 329 --------QLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLS 396 (526)
T ss_dssp --------HHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHH
T ss_pred --------HHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHh
Confidence 11233346778899999988 34466777789985 33222111 11111122223467899999999
Q ss_pred CCceeeeCCCCchhhhhhhhcccc
Q 008992 453 NSDIFMPSHGGNMGHAIQGHRAYA 476 (547)
Q Consensus 453 ~SDVFV~t~~GNfa~~V~GhR~y~ 476 (547)
++|+||++.++|+++++...|.-.
T Consensus 397 ~cd~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 397 QADFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp HSSEEEECTTSHHHHHHHHHHTTS
T ss_pred cCCeeecCCCCHHHHHHHHHhcCc
Confidence 999999999999999987766443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.77 E-value=0.00025 Score=71.14 Aligned_cols=256 Identities=13% Similarity=0.162 Sum_probs=126.3
Q ss_pred CCcEEEEEEcCchhhHHHHHHHHHHHHHHhCCeEeccccccccccCCCCCCcCCCChHHHHHhccC--CcEEecc-Cccc
Q 008992 157 RRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLAN--DVRIVSS-LPST 233 (547)
Q Consensus 157 snGYL~V~~nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~D~S~F~DIFD~dhFI~~L~~--dVrIVk~-LP~~ 233 (547)
+.+||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| +..|. ...+ ...+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4579999999999999999999999999999998886433 22221 2355555 22232 1100 0000100 0100
Q ss_pred ccccCCcccccCCCCCChhHH-----------HHHHHH-------hhh--hcc-eEEEeccCccccCCCChhhhhhhhhh
Q 008992 234 HIMTRPVEEKRTPLHVSPQWI-----------RARYLR-------RLN--REG-VLLLRGLDSRLSKDLPSDLQKLRCKV 292 (547)
Q Consensus 234 ~~~~~~~~~~~vp~~~sp~~y-----------~~~vlP-------~L~--k~~-VI~l~~~d~RLa~~lP~diQrLRCrv 292 (547)
...+....|.|+ .+++.+ ++. .+. ...+.+- ..+ .+..-|. .-..
T Consensus 78 ---------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~---~w~~~~~-~~~~ 143 (330)
T 2hhc_A 78 ---------LSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACL---MWRCSEE-AERL 143 (330)
T ss_dssp ---------CCCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCC---TTSSCHH-HHHH
T ss_pred ---------ccCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-ccc---ccchhhh-hHHH
Confidence 000000001110 122221 111 110 0122220 011 1111111 1233
Q ss_pred cccccccChhHHHHHHHHHHHHHhcCCeEEeeccchhhhhhhhcCCCCc---hhhHHHHHHHhhccccccccCCCChHHH
Q 008992 293 AFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGP---EYDEMISNERKQRPELLTARSNMTYHER 369 (547)
Q Consensus 293 nf~ALrF~p~I~~Lg~~LV~RmR~~GpyiALHLR~E~DMlAfsgC~~g~---e~~e~l~~~R~~~~~~~~~~~~i~~~~~ 369 (547)
.|.-|+++++|++..+.+.+.+-...++|+||.|.=.+. ..|.++. +....++.+..
T Consensus 144 i~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~~~~~~~~~l~~~~~----------------- 203 (330)
T 2hhc_A 144 IFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAPYWADSELALHQVCM----------------- 203 (330)
T ss_dssp HHHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC---------------CHHHHHHHHHHHH-----------------
T ss_pred HHhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCcchHHHhHHHHHHHH-----------------
Confidence 457789999999999988876434569999999954321 1232210 00000111110
Q ss_pred hhCCCCCCCHHHHHHHHHHc--CCC-CCcEEEEeecccCCccccccchHhhCCCceecc-cCCCc--cccc-ccc-cchh
Q 008992 370 KLAGLCPLNAVEVTRLLKAL--GAP-KIARIYWAGGEPLGGKEALLPLITEFPHLYNKE-DLALP--GELE-PFA-NKAS 441 (547)
Q Consensus 370 R~~G~CPLTPeEvgl~LraL--Gf~-~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKe-~Las~--eEL~-pF~-~~ss 441 (547)
-++.+ -.+ .+..||||+-+. ..++-|+++||++.+-. .+... ..+- +.. ....
T Consensus 204 ---------------~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 264 (330)
T 2hhc_A 204 ---------------AIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGG 264 (330)
T ss_dssp ---------------HHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHH
T ss_pred ---------------HHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccc
Confidence 00100 012 467999999884 34677889999853321 11100 0000 000 1135
Q ss_pred hhhHhhhhhhcCCceee-eCCCCchhhhhh
Q 008992 442 LMAAIDYIVSENSDIFM-PSHGGNMGHAIQ 470 (547)
Q Consensus 442 ~~AALDYiVcl~SDVFV-~t~~GNfa~~V~ 470 (547)
..|.+|.+...++|.+| ++..++|+...+
T Consensus 265 ~~~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 265 ASALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred hHHHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 56889999999999999 555777777655
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=32.94 E-value=18 Score=27.25 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.1
Q ss_pred ccccChhHHHHHHHHHHHHHhcCCeE
Q 008992 296 ALRFAPPILQLGNKLAERMRSKGPYL 321 (547)
Q Consensus 296 ALrF~p~I~~Lg~~LV~RmR~~Gpyi 321 (547)
++-|+.-+.++|.++|.||++...|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45577889999999999999876553
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=17.88 E-value=1.2e+02 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeecc
Q 008992 374 LCPLNAVEVTRLLKALGAPKIARIYWAGGE 403 (547)
Q Consensus 374 ~CPLTPeEvgl~LraLGf~~~T~IYlAaGe 403 (547)
.|||++||+...|+.|--+.+ ..||..++
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 799999999999999885543 56665554
No 7
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=17.27 E-value=53 Score=33.23 Aligned_cols=41 Identities=32% Similarity=0.598 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCCCcEEEEeecccCCccccccchHhhCCCceecccCCCcccccccccchhhhhHhhhhh
Q 008992 380 VEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIV 450 (547)
Q Consensus 380 eEvgl~LraLGf~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~~AALDYiV 450 (547)
+||-.+||+|||| |+ .||..|.++.- |. +-+..++||+++|
T Consensus 71 eev~~~lK~L~YP-------------------------~~--isKS~L~a~g~--pH-sWp~~Lg~L~WLv 111 (315)
T 2ve7_A 71 EEVPRIFKDLGYP-------------------------FA--LSKSSMYTVGA--PH-TWPHIVAALVWLI 111 (315)
T ss_dssp HHHHHHHHHTTCS-------------------------SC--CCHHHHHTTTS--TT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-------------------------ce--eCHHHhcCCCC--CC-cHHHHHHHHHHHH
Confidence 5799999999999 11 47888877651 21 2357899999987
No 8
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=16.76 E-value=51 Score=29.34 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeecccCC
Q 008992 377 LNAVEVTRLLKALGAPKIARIYWAGGEPLG 406 (547)
Q Consensus 377 LTPeEvgl~LraLGf~~~T~IYlAaGeiyG 406 (547)
|-|.||+.+|...||..+. ..-+.||
T Consensus 3 LRPDEVArVLEk~GF~~D~----vt~kaYG 28 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV----VTNKTYG 28 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE----EETTEEE
T ss_pred cChHHHHHHHHHcCceEEE----eeccccc
Confidence 6799999999999998553 2345565
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=15.58 E-value=30 Score=27.07 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=32.5
Q ss_pred cccccchHhhCCCceecccCCCcccccccccchhhhhHhhhhhhcCCceeeeCC
Q 008992 408 KEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSH 461 (547)
Q Consensus 408 ~~~L~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~ 461 (547)
+..++-|++|||++ +++.+-. -|. .+..+..+|||-...+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-d~~~I~~--vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIRS--VLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHHH--HHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHHH--HHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 45678899999987 2322211 111 2456889999999988877665554
No 10
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=15.43 E-value=71 Score=31.62 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=22.4
Q ss_pred HhhCCCCCCCHHHH----HHHHHHcCCCCCcEEEEeecccCC
Q 008992 369 RKLAGLCPLNAVEV----TRLLKALGAPKIARIYWAGGEPLG 406 (547)
Q Consensus 369 ~R~~G~CPLTPeEv----gl~LraLGf~~~T~IYlAaGeiyG 406 (547)
+|+-|.| -|. +.+|++|||+ +|+.+|.+|.
T Consensus 66 ~~RGGyC----~ElN~Lf~~~L~~LGF~----V~~~~~rV~~ 99 (284)
T 1e2t_A 66 ARRGGYC----FELNGLFERALRDIGFN----VRSLLGRVIL 99 (284)
T ss_dssp TCCCBCH----HHHHHHHHHHHHHTTCC----EEEEEEEECT
T ss_pred CCCcEEh----HHHHHHHHHHHHHCCCe----EEEEEEEEec
Confidence 3567899 674 6789999998 7776666653
Done!