Query 008992
Match_columns 547
No_of_seqs 186 out of 418
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 16:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008992.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008992hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 24.5 32 0.0024 28.5 4.1 29 374-403 17-45 (118)
2 d2ihoa2 d.3.1.18 (A:156-293) A 20.8 7.1 0.00052 33.2 -0.9 35 189-223 31-70 (138)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 20.5 9.1 0.00066 28.5 -0.2 50 407-461 9-58 (59)
4 d1oqya2 a.5.2.1 (A:317-360) DN 20.0 6.6 0.00048 27.8 -1.0 20 384-403 9-30 (44)
5 d1vpqa_ c.1.32.1 (A:) Hypothet 19.7 73 0.0053 28.8 6.0 27 251-277 148-174 (260)
6 d1vjna_ d.157.1.4 (A:) Hypothe 17.8 70 0.0051 27.5 5.2 54 175-233 142-200 (209)
7 d2g7ja1 d.198.5.1 (A:1-112) Pu 16.5 27 0.002 28.5 1.8 26 377-406 3-28 (112)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 15.0 44 0.0032 25.0 2.6 23 369-392 13-35 (75)
9 d2fr5a1 c.97.1.1 (A:11-146) mo 13.7 53 0.0038 27.2 3.0 41 384-429 94-134 (136)
10 d2axti1 f.23.37.1 (I:1-35) Pho 13.0 50 0.0036 22.0 2.0 10 63-72 17-26 (35)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=24.46 E-value=32 Score=28.54 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEeecc
Q 008992 374 LCPLNAVEVTRLLKALGAPKIARIYWAGGE 403 (547)
Q Consensus 374 ~CPLTPeEvgl~LraLGf~~~T~IYlAaGe 403 (547)
.|||++||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 7999999999999998765554 5666544
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=20.79 E-value=7.1 Score=33.16 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=28.6
Q ss_pred eEeccccccccccCCC-----CCCcCCCChHHHHHhccCC
Q 008992 189 ALVVPILQVNVIWGDE-----SEFSDIFDLEHFKSVLAND 223 (547)
Q Consensus 189 TLVlP~L~~~s~W~D~-----S~F~DIFD~dhFI~~L~~d 223 (547)
=||||...-+++|+++ .-=+.|||-|.|--+.|.-
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaA 70 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAA 70 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHH
Confidence 3899999999999963 2457899999998877654
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.54 E-value=9.1 Score=28.54 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=34.0
Q ss_pred ccccccchHhhCCCceecccCCCcccccccccchhhhhHhhhhhhcCCceeeeCC
Q 008992 407 GKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSH 461 (547)
Q Consensus 407 g~~~L~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~ 461 (547)
-++.+.-|++|||++- ++.+-. -|+ .+..+..+|+|=..-..-+.|-|++
T Consensus 9 ~Ee~i~~LkeMFP~~D-~~vI~~--VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMD-QEVIRS--VLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSSC-HHHHHH--HHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cHHHHHHHHHHCCCCC-HHHHHH--HHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 4566899999999983 222211 111 2567888999988888888777654
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=6.6 Score=27.84 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=15.8
Q ss_pred HHHHHcCCCCCc--EEEEeecc
Q 008992 384 RLLKALGAPKIA--RIYWAGGE 403 (547)
Q Consensus 384 l~LraLGf~~~T--~IYlAaGe 403 (547)
.=|.+|||+++. .+|+|-.+
T Consensus 9 eRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 9 ERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp HHHHHHTCCSHHHHHHTSSSSS
T ss_pred HHHHHcCCCHHHHHHHHHHhCc
Confidence 348899999998 46888766
No 5
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga maritima [TaxId: 2336]}
Probab=19.69 E-value=73 Score=28.85 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhhhhcceEEEeccCccc
Q 008992 251 PQWIRARYLRRLNREGVLLLRGLDSRL 277 (547)
Q Consensus 251 p~~y~~~vlP~L~k~~VI~l~~~d~RL 277 (547)
++|+.+.+...|+++||+++..-...+
T Consensus 148 ~sW~~~~~~~~L~~~~v~~V~~D~p~~ 174 (260)
T d1vpqa_ 148 YSWDREETYEFLRNHGITFVVVDEPKL 174 (260)
T ss_dssp GGGCSHHHHHHHHHHTCEEEEEECCCC
T ss_pred chhccHHHHHHHHHcCCEEEEECCCCC
Confidence 579999999999999999876544443
No 6
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=17.83 E-value=70 Score=27.54 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCeEeccccccccccCCCCCCcCCCChHHHHHhccCC-----cEEeccCccc
Q 008992 175 QIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLAND-----VRIVSSLPST 233 (547)
Q Consensus 175 ~IcDaVaVARiLNATLVlP~L~~~s~W~D~S~F~DIFD~dhFI~~L~~d-----VrIVk~LP~~ 233 (547)
.--+|+.+|+.|++-.|||-= |+.....| ++=..|.|++.++.. +-.+.++|++
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred CHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 356889999999999999952 22222222 345578888876643 3334455553
No 7
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=16.53 E-value=27 Score=28.52 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEeecccCC
Q 008992 377 LNAVEVTRLLKALGAPKIARIYWAGGEPLG 406 (547)
Q Consensus 377 LTPeEvgl~LraLGf~~~T~IYlAaGeiyG 406 (547)
|-|.||+.+|+..||..+. .+-+.||
T Consensus 3 LRPDEVArVLe~aGF~~d~----vt~kaYG 28 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV----VTNKTYG 28 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE----EETTEEE
T ss_pred cChHHHHHHHHHcCceEEE----eeccccc
Confidence 6799999999999997542 3345566
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=14.96 E-value=44 Score=24.96 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.8
Q ss_pred HhhCCCCCCCHHHHHHHHHHcCCC
Q 008992 369 RKLAGLCPLNAVEVTRLLKALGAP 392 (547)
Q Consensus 369 ~R~~G~CPLTPeEvgl~LraLGf~ 392 (547)
.|..|.. ++++|+...|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 4566766 9999999999999996
No 9
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.73 E-value=53 Score=27.23 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHHcCCCCCcEEEEeecccCCccccccchHhhCCCceecccCCC
Q 008992 384 RLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLAL 429 (547)
Q Consensus 384 l~LraLGf~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKe~Las 429 (547)
.+|.-+ ..++.||+...+ |+.....|.++.|.-+++++|-.
T Consensus 94 Q~l~E~--~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp HHHHHT--CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred HHHHhh--CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 455554 468899998877 66667789999999999998753
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.95 E-value=50 Score=21.98 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=4.3
Q ss_pred HHhhhccccC
Q 008992 63 GMLKLGFNLD 72 (547)
Q Consensus 63 ~~~~~~~~~~ 72 (547)
+++.+||-.+
T Consensus 17 ~lFiFGFLSn 26 (35)
T d2axti1 17 LLFVFGFLSG 26 (35)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHhhccC
Confidence 3344444433
Done!