BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008993
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34355|YTCJ_BACSU Putative amidohydrolase YtcJ OS=Bacillus subtilis (strain 168)
GN=ytcJ PE=4 SV=1
Length = 529
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 158/541 (29%), Positives = 249/541 (46%), Gaps = 68/541 (12%)
Query: 52 GVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ-LAADGTNVLNLQGKVVVPGFIDSHV 110
G I+T + +++ +++G I G+Y +++ + T ++L G V+ PGF+DSH+
Sbjct: 8 GFIYTMLEEGDRTEAVYVEDGVIKGTGSYERLKEKYGSPETEEISLNGAVMFPGFVDSHL 67
Query: 111 HFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWN-NDLWGGDLPMASW 169
H I G + ++ L ++ KD ++ KE + K W++G GWN N D
Sbjct: 68 HLIGHGEKQLQLDLSALTSKDSILQAAKERERQLPKNDWLIGEGWNENQFETPDYLTKHD 127
Query: 170 IDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAA 229
+D + P PV L R+ H NS ALQ GI+ + DP+GG I+K ++GEPTGLL D A
Sbjct: 128 LDRLFPDRPVLLKRICRHAIAVNSAALQAAGISRNTPDPDGGVIVKDANGEPTGLLFDKA 187
Query: 230 MKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV--- 286
LIL +P VS EAL A ++G+T G S LS+ + DV
Sbjct: 188 QDLILKAVPPVSQHYVDEALTAAIKDCWTKGLTG---------GHSEDLSY--YGDVSVP 236
Query: 287 ---YQWASYSEKMKIRVCLFFPLET---WSSLADLINKTGHVLSDWVYLGGVKAFADGSL 340
Y+ A+ K R L E W L L +V G +K FADG+L
Sbjct: 237 MKAYEKAAAGGKYPFRCHLLVHHEAVDRWEQLEKLSGP-------YVEFGAMKIFADGAL 289
Query: 341 GSNSALFH--------------------------------EVAIHAIGDRANDLVLDMYK 368
G +AL EVA+HAIGD A + VL+ +
Sbjct: 290 GGRTALLKEPYQDDPSTNGVQVHDDETLGRLIRKAREKGMEVAVHAIGDLAFEKVLNAIE 349
Query: 369 SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAE 428
G+ D R+ HAQ L + R I +QP + D +LG DR
Sbjct: 350 KHPPKNGRHD---RLIHAQVLDNELIERAARMPIALDLQPHFVASDFPWVIDRLGKDRM- 405
Query: 429 RESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDN--AWIPSERISLTD 486
+ ++ +++L++ L A GSD P+ ++PL I++A+ R N ++ SE + + +
Sbjct: 406 KTAFAWKTLISKGILCAGGSDAPIEPVDPLLGIQSAVLRKSSHEQNGPSYNESECLPVYE 465
Query: 487 ALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVS-ASIEATYVSGVQA 545
A+ +T +A + E G ++ G ADF +LS + A++ I+ T ++G
Sbjct: 466 AIKLYTEGSAGIIYKEKSRGKIAEGYDADFTVLSGDPFAIDPAQLHLLEIKKTVINGQIV 525
Query: 546 Y 546
Y
Sbjct: 526 Y 526
>sp|Q68AP4|NFDA_ARTPS N-substituted formamide deformylase OS=Arthrobacter pascens GN=nfdA
PE=1 SV=1
Length = 542
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 148/547 (27%), Positives = 237/547 (43%), Gaps = 61/547 (11%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ N + T D A ++ + GRI VG + V+ AA VL++ GK VVPGF
Sbjct: 6 DLMIINANVRTVDARNSCAQAVLVSGGRIAIVGTETEVRGAAAPDAEVLDVSGKTVVPGF 65
Query: 106 IDSHVH-----FIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWN-NDL 159
ID+H H F P + + L + DE + ++ +N G W+ G ++ + +
Sbjct: 66 IDAHNHLSVAAFAPDSVDCSTPPLATL---DEVLEVIERHCRNIPPGQWVRGINFHASHI 122
Query: 160 WGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSG 219
P +D++ P+NP +L H G ANS AL LVGI + +P GG I + SG
Sbjct: 123 REQRNPTRYELDEVAPNNPFFLIDASCHAGFANSAALDLVGIGAHTPEPWGGEIERDLSG 182
Query: 220 EPTGLLIDAAMKLI--LPW--IPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGES 275
+PTG L++AA L+ W E D E L N L+ G+T V D
Sbjct: 183 KPTGTLLEAAANLLHSASWNDYAERDWDRAVELLHSKMNDYLAVGLTGVGD--------- 233
Query: 276 VQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADL--INKTGHVLSDWVYL---G 330
+ A++Y+ A + KM + + + S+ DL + ++ YL G
Sbjct: 234 -AMVTAKSAELYRRADAAGKMPFTLQQLHGGDHFFSMQDLGRSDTVDRIMEPESYLLRGG 292
Query: 331 GVKAFADGS----------------LGSN--------------SALFHEVAIHAIGDRAN 360
+K F D + +G+N S L +AIH +G+ A
Sbjct: 293 AMKIFVDRAYPSPAIDQIHDGCKTHVGANFYSKSEVHDLAVRASKLGINLAIHGMGNCAI 352
Query: 361 DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARK 420
D+VLD Y++V + D R+EHA +G R D GI P +
Sbjct: 353 DIVLDAYEAVRRQSNA-DTVLRLEHAFIAETGQGQRMADLGIDLVANPGLAFGWGEVFNM 411
Query: 421 KLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSE 480
G ++ + + +S+L ++L SD P +P + TA+ R P E
Sbjct: 412 WRGENQEHLKLFPVRSMLDAGVRVSLASDHPCGTYSPAEIMWTAVARETMAG-APLEPDE 470
Query: 481 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSA-SIEATY 539
++ +AL +T++ A A ++ GS+ GK A+ ++L + E+ + TY
Sbjct: 471 AVTADEALRMYTINPAHASGRGSEEGSIEAGKRANLLVLDRDPVDCATGELRELQVLRTY 530
Query: 540 VSGVQAY 546
V GV Y
Sbjct: 531 VDGVLRY 537
>sp|Q06555|AEPA_PECCC Exoenzymes regulatory protein AepA OS=Pectobacterium carotovorum
subsp. carotovorum GN=aepA PE=4 SV=1
Length = 465
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 160/386 (41%), Gaps = 62/386 (16%)
Query: 29 LKLTPATTTTTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAA 88
+K+ T T++ A V N I+T +D A + + G+IV VG + A
Sbjct: 5 VKMLSVTLGLFTSHAFAHTVYENARIYTVNDRQPTASVLVVDQGKIVYVGGNDGAKPFKA 64
Query: 89 DGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR----VKLRGVSHKDEFVRRVKEAVKNS 144
T +++L+GK V+PGFI+SH H P + + V + G + + ++K +
Sbjct: 65 TATELVDLEGKTVLPGFIESHAH--PATVAVMEAGDFVYVDGARTLSQILSQLKAYLVAH 122
Query: 145 KKGSWILGGGWNNDLWG---GDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGI 201
K +++L G+N G G LP A+ +D ++ P+ + H G ANS AL + +
Sbjct: 123 PKANYLLAQGFNVASLGLPQGALPTAADLDTVSESVPIVVYDSGMHAGWANSAALNVAHV 182
Query: 202 TNLSEDPNGGT--IMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSR 259
+ DP G + + G PTG + ++AM ++ +V+ E L S
Sbjct: 183 DANTPDPIPGKHYFERDNKGNPTGFMHESAMHNVVDAQQFNAVENVAEKLQPILKTYHSL 242
Query: 260 GVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCL---FFPLETWSSLADLI 316
G T + D G + V A +E+ K++V +F S+ ++
Sbjct: 243 GFTAITDVGDTFS-----------TTVAAIARLNEQGKLKVYYQRGYFYDAAKSTEQNIA 291
Query: 317 NKTGHVLSDWVYLGGV-----KAFADGSLGSNSALFHE---------------------- 349
+ G L + + G + K F DG++ +S ++
Sbjct: 292 SLKG--LREKYHQGNLSINLYKLFMDGTIEMDSGAMYQPYPNGNVVEPFLSQKQINDNVA 349
Query: 350 --------VAIHAIGDRANDLVLDMY 367
V +HAIGD+A +LD +
Sbjct: 350 AALKAGFSVHVHAIGDKAQQSILDAF 375
>sp|A0AJJ5|ADEC_LISW6 Adenine deaminase OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=ade PE=3 SV=1
Length = 579
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 13/71 (18%)
Query: 44 EADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKV 100
+ADLV+ NG I F+G+ + +AIKNG I +G++S +Q +++ G+
Sbjct: 19 KADLVIKNGRIVNVFSGE---IMEGDIAIKNGYIAGIGDFSEAEQ-------IMDAAGEF 68
Query: 101 VVPGFIDSHVH 111
+VPGFID+HVH
Sbjct: 69 IVPGFIDAHVH 79
>sp|P39761|ADEC_BACSU Adenine deaminase OS=Bacillus subtilis (strain 168) GN=adeC PE=1
SV=2
Length = 577
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+AD+V+ NG I + + +AI +G IV +G Y +G N+++ +G+++VP
Sbjct: 18 KADIVIKNGKIMDVYNQEWIYEDIAITDGVIVGLGEY--------EGENIIDAEGQMIVP 69
Query: 104 GFIDSHVHF 112
GFID HVH
Sbjct: 70 GFIDGHVHI 78
>sp|Q1MCV9|URE1_RHIL3 Urease subunit alpha OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=ureC PE=3 SV=1
Length = 570
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +K+GRIV++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGIYKADIGLKDGRIVAIGKAGNPDMQPGVNIIVGPGTEAIAAEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
>sp|B5ZMP0|URE1_RHILW Urease subunit alpha OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=ureC PE=3 SV=1
Length = 570
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +K+GRIV++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGVYKADIGLKDGRIVAIGKAGNPDMQPGVNIIVGPGTEAIAAEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
>sp|B3PXB3|URE1_RHIE6 Urease subunit alpha OS=Rhizobium etli (strain CIAT 652) GN=ureC
PE=3 SV=1
Length = 570
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +KNGRI ++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGIYKADIGLKNGRIAAIGKAGNPDMQPGVNIIVGPGTEAIAGEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
>sp|Q2K517|URE1_RHIEC Urease subunit alpha OS=Rhizobium etli (strain CFN 42 / ATCC 51251)
GN=ureC PE=3 SV=1
Length = 570
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +KNGRI ++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGIYKADIGLKNGRIAAIGKAGNPDMQPGVNIIVGPGTEAIAGEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
>sp|B2V525|ADEC_CLOBA Adenine deaminase OS=Clostridium botulinum (strain Alaska E43 /
Type E3) GN=ade PE=3 SV=1
Length = 581
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 14/73 (19%)
Query: 43 LEADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
++AD VV NG I FTGD + +AI +G I +G Y DG +++ Q K
Sbjct: 19 VKADTVVKNGKILNVFTGD---ITRGDIAIVDGFIAGIGKY--------DGEQIIDAQDK 67
Query: 100 VVVPGFIDSHVHF 112
V+VPGFID H+H
Sbjct: 68 VIVPGFIDGHMHI 80
>sp|Q2RL95|ADEC_MOOTA Adenine deaminase OS=Moorella thermoacetica (strain ATCC 39073)
GN=ade PE=3 SV=1
Length = 596
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 28 LLKLTPATTTTTTTNLEADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQ 84
L ++T T L AD V+ G + FTG+ + +AIKNGRI SVG+ SA
Sbjct: 8 LAEVTRELVAVATGKLPADTVIKGGKVVNVFTGE---ILPWDIAIKNGRIASVGDVSAA- 63
Query: 85 QLAADGTNVLNLQGKVVVPGFIDSHVH 111
T V++ G + PGF+D HVH
Sbjct: 64 --VGPETEVIDASGYYLCPGFMDGHVH 88
>sp|A9BIU9|ADEC_PETMO Adenine deaminase OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=ade PE=3 SV=1
Length = 570
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+ADLV NG I + + + +AI NG I+ G Y +G ++L+GK + P
Sbjct: 15 KADLVFKNGKIIDVFNEKVIEEDLAISNGVIIGFGKY--------EGKEEVDLEGKFISP 66
Query: 104 GFIDSHVHF 112
GFID+H+H
Sbjct: 67 GFIDAHLHL 75
>sp|Q71YS6|ADEC_LISMF Adenine deaminase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=ade PE=3 SV=1
Length = 579
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+ADLV+ NG I + +AIKNG I +GN+ D +++ G + P
Sbjct: 19 KADLVIKNGRIINVFSGEIMDGDIAIKNGYIAGIGNFP-------DAEKIIDAAGAFIAP 71
Query: 104 GFIDSHVH 111
GFID+HVH
Sbjct: 72 GFIDAHVH 79
>sp|B2TJH6|ADEC_CLOBB Adenine deaminase OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=ade PE=3 SV=1
Length = 581
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 43 LEADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
++AD VV NG I FTGD + +AI +G I +G Y +G ++ Q K
Sbjct: 19 VKADTVVKNGKILNVFTGD---IMRGDIAIVDGFIAGIGQY--------EGEQIIYAQNK 67
Query: 100 VVVPGFIDSHVHF 112
V+VPGFID H+H
Sbjct: 68 VIVPGFIDGHMHI 80
>sp|Q5WJ39|ADEC1_BACSK Adenine deaminase 1 OS=Bacillus clausii (strain KSM-K16) GN=ade1
PE=3 SV=1
Length = 576
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
AD++V NG + ++ S+AI +G IV +G+Y+ +G V++ QGK V P
Sbjct: 21 ADILVINGKLIDVYTLTIYEASIAITDGYIVGIGDYT-------EGKTVIDAQGKYVCPP 73
Query: 105 FIDSHVHF 112
ID HVH
Sbjct: 74 LIDGHVHI 81
>sp|Q2YYQ6|URE1_STAAB Urease subunit alpha OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|P67405|URE1_STAAW Urease subunit alpha OS=Staphylococcus aureus (strain MW2) GN=ureC
PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|A8Z387|URE1_STAAT Urease subunit alpha OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|Q6G732|URE1_STAAS Urease subunit alpha OS=Staphylococcus aureus (strain MSSA476)
GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|P67404|URE1_STAAN Urease subunit alpha OS=Staphylococcus aureus (strain N315) GN=ureC
PE=1 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|P67403|URE1_STAAM Urease subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|A6QJD0|URE1_STAAE Urease subunit alpha OS=Staphylococcus aureus (strain Newman)
GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|Q5HDR8|URE1_STAAC Urease subunit alpha OS=Staphylococcus aureus (strain COL) GN=ureC
PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|Q2G2K5|URE1_STAA8 Urease subunit alpha OS=Staphylococcus aureus (strain NCTC 8325)
GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|Q2FEK3|URE1_STAA3 Urease subunit alpha OS=Staphylococcus aureus (strain USA300)
GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|A7X5M3|URE1_STAA1 Urease subunit alpha OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|A5IV71|URE1_STAA9 Urease subunit alpha OS=Staphylococcus aureus (strain JH9) GN=ureC
PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|A6U414|URE1_STAA2 Urease subunit alpha OS=Staphylococcus aureus (strain JH1) GN=ureC
PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|Q6GEE4|URE1_STAAR Urease subunit alpha OS=Staphylococcus aureus (strain MRSA252)
GN=ureC PE=3 SV=1
Length = 571
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV++N VI D ++ AD + IKNG I ++GN V + T+++ +G
Sbjct: 70 ADLVISNAVIIDYD-KVVKAD-IGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|Q12XX8|ADEC_METBU Adenine deaminase OS=Methanococcoides burtonii (strain DSM 6242)
GN=ade PE=3 SV=1
Length = 584
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 40 TTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
T ++AD + G++ + + +A+K G IV +G+ S+ L D T ++++ GK
Sbjct: 15 TGKVKADTIFFGGLLINVNTKEMLYRDIAVKEGYIVGIGDVSS---LKGDETEMIDVTGK 71
Query: 100 VVVPGFIDSHVHFIPGGLQMARVKLRGVSH 129
+ PG +D HVHF + +++ + ++H
Sbjct: 72 HLCPGLMDGHVHFESSMVTLSQFAVPALAH 101
>sp|Q65K51|ADEC_BACLD Adenine deaminase OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=ade PE=3 SV=1
Length = 573
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+A+ V+ NG I + +AI +G IV +G Y +G N+++ +G+++VP
Sbjct: 18 KAETVIKNGKIMDVFNQEWLETDIAITDGAIVGLGEY--------EGGNIIDAEGQMIVP 69
Query: 104 GFIDSHVHF 112
GFID HVH
Sbjct: 70 GFIDGHVHI 78
>sp|Q8RFG1|HUTI_FUSNN Imidazolonepropionase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=hutI PE=3 SV=1
Length = 413
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126
+ I+ +IV+VG+ +++ T +++L GK+V PG IDSH H + GG
Sbjct: 37 IVIEKDKIVAVGSGEVLKEYLTPATEMVDLSGKLVTPGLIDSHTHLVHGG---------- 86
Query: 127 VSHKDEFVRRV 137
S ++EF ++
Sbjct: 87 -SRENEFAMKI 96
>sp|A7Z9N4|URE1_BACA2 Urease subunit alpha OS=Bacillus amyloliquefaciens (strain FZB42)
GN=ureC PE=3 SV=1
Length = 569
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--------QLAADGTNVLNLQ 97
DLV+TN VI D + + + +K+GRIV VG + GT V++ +
Sbjct: 68 DLVITNAVIL--DYTGIVKADIGVKDGRIVGVGKSGNPDIMDGVDPYMIIGAGTEVISGE 125
Query: 98 GKVVVPGFIDSHVHFI-PGGLQMA 120
GK+V G +D+H+HFI P +++A
Sbjct: 126 GKIVTAGGVDTHIHFICPQQMEVA 149
>sp|A8ESZ8|URE1_ARCB4 Urease subunit beta OS=Arcobacter butzleri (strain RM4018) GN=ureB
PE=3 SV=1
Length = 566
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ---------QLAADGTNVLN 95
ADL++TN +I D + ++ + IK+G+I+++G ++ A+ T +L+
Sbjct: 64 ADLIITNAIII--DYTGIYKADIGIKDGKILAIGKSGNPNLCDGITEGLEIGAN-TEILS 120
Query: 96 LQGKVVVPGFIDSHVHFI-PGGLQMA 120
+GK++ G ID+H+HFI PG + A
Sbjct: 121 AEGKIITAGGIDTHIHFISPGQINEA 146
>sp|Q92AR6|ADEC_LISIN Adenine deaminase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=ade PE=3 SV=1
Length = 579
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 44 EADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKV 100
+ADLV+ NG I F+G+ + +AIKNG I +G++ D +++ G+
Sbjct: 19 KADLVIKNGRIVNVFSGE---IMEGDIAIKNGYIAGIGHFP-------DADQIIDAAGEF 68
Query: 101 VVPGFIDSHVH 111
+ PGFID+HVH
Sbjct: 69 ISPGFIDAHVH 79
>sp|A7Z463|ADEC_BACA2 Adenine deaminase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=ade PE=3 SV=1
Length = 577
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+AD V+ NG I + + +AI G IV +G Y +G V++ +G+++VP
Sbjct: 18 KADTVIKNGKIMDVFNQEWISADIAITGGVIVGLGEY--------EGEEVIDAEGQMIVP 69
Query: 104 GFIDSHVHF 112
GFID HVH
Sbjct: 70 GFIDGHVHI 78
>sp|P94212|NDDD_ALCXX N-acyl-D-aspartate deacylase OS=Alcaligenes xylosoxydans
xylosoxydans PE=1 SV=1
Length = 498
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+AD ++ + G +A++ GRIV++G+++ A G V++ +G + P
Sbjct: 13 QADFIIAGATLIDGGGGPARQGDLAVRGGRIVALGDFAH-----APGVPVIDARGLALAP 67
Query: 104 GFIDSHVH 111
GFIDSH H
Sbjct: 68 GFIDSHTH 75
>sp|Q67JH7|HUTI_SYMTH Imidazolonepropionase OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=hutI PE=3 SV=1
Length = 425
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 58 DDSLLFADSMAIKNGRIVSVGNYSAVQQLAADG--TNVLNLQGKVVVPGFIDSHVHFIPG 115
D +++ ++A ++GRIV+VG V + G T V++ +G+ V+PGF+D H H
Sbjct: 29 DAAVIPGGALAARDGRIVAVGPEDEVLRTVETGPDTRVIDARGRAVIPGFVDPHTHLCFA 88
Query: 116 GLQMARVKLR--GVSHKDEFVR--RVKEAVKNSKKGSW 149
G + LR G ++++ R + E V+ ++ S
Sbjct: 89 GDRAEEFALRLGGATYQEIAARGGGILETVRATRAASQ 126
>sp|Q3AE90|ADEC1_CARHZ Adenine deaminase 1 OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=ade1 PE=3 SV=1
Length = 603
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101
L+A LV+ NG++ ++ +A+ + I+ VG+ S L T V++LQGK
Sbjct: 23 ELKATLVLKNGLVINVVTREIYPADVAVYDEYILKVGDAS---DLIGPETEVVDLQGKYY 79
Query: 102 V-PGFIDSHVHF 112
V PGFIDSH+HF
Sbjct: 80 VSPGFIDSHMHF 91
>sp|A0LMI3|MTAD_SYNFM 5-methylthioadenosine/S-adenosylhomocysteine deaminase
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=mtaD PE=3 SV=2
Length = 438
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 44 EADLVVTNGVIFTGD-DSLLF-ADSMAIKNGRIVSVGNYSAVQQLAAD--GTNVLNLQGK 99
ADL++ NG++ T D D F ++AI NG I +VG ++LAAD T L++ G
Sbjct: 5 RADLLLVNGMVLTLDPDGRRFDPGAVAILNGEIAAVG---PAERLAADFRATRTLDVGGC 61
Query: 100 VVVPGFIDSHVH 111
VV+PG I++H H
Sbjct: 62 VVLPGLINAHTH 73
>sp|Q8Y6E5|ADEC_LISMO Adenine deaminase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=ade PE=3 SV=1
Length = 580
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+ADLV+ NG I + +AIKNG I +G++ D +++ G + P
Sbjct: 20 KADLVIKNGRIINVFSGEIMDGDIAIKNGYIAGIGSFP-------DAEKIIDAAGAFIAP 72
Query: 104 GFIDSHVH 111
GFID+HVH
Sbjct: 73 GFIDAHVH 80
>sp|Q4A0J5|URE1_STAS1 Urease subunit alpha OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=ureC
PE=1 SV=3
Length = 571
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV+TN +I D ++ AD + +KNG I+ +G V + T++++ +G
Sbjct: 70 ADLVITNAMIIDYD-KIVKAD-IGVKNGYIMKIGKAGNPDIMDNVDIIIGATTDIISAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHFI
Sbjct: 128 KIVTAGGIDTHVHFI 142
>sp|Q5LSQ2|URE1_RUEPO Urease subunit alpha OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM
15171 / DSS-3) GN=ureC PE=3 SV=1
Length = 569
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 38 TTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGT 91
TT D V+TN +I D S ++ + +KNGRI +G V + GT
Sbjct: 61 TTRAEGAVDTVITNALIV--DHSGIYKADVGLKNGRIAKIGKAGNPDTQPGVDIIVGPGT 118
Query: 92 NVLNLQGKVVVPGFIDSHVHFI 113
+ +G+++ G DSH+HFI
Sbjct: 119 EAIAGEGRILTAGGFDSHIHFI 140
>sp|A1WIM3|URE1_VEREI Urease subunit alpha OS=Verminephrobacter eiseniae (strain EF01-2)
GN=ureC PE=3 SV=1
Length = 590
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN +I D + + + +++GRI ++G + V + GT V++ +G+
Sbjct: 72 DTVLTNALIM--DAAGIVKADIGLRDGRIAAIGKAGNPDTQAGVDIIIGPGTEVISCEGQ 129
Query: 100 VVVPGFIDSHVHFI 113
+V G IDSH+HFI
Sbjct: 130 IVTAGGIDSHIHFI 143
>sp|C4LF63|URE1_TOLAT Urease subunit alpha OS=Tolumonas auensis (strain DSM 9187 / TA4)
GN=ureC PE=3 SV=1
Length = 567
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +KNGRI +G V + GT V+ +G
Sbjct: 67 DLVITNALII--DHWGIVKADIGVKNGRIAGIGKAGNPDVQPGVTLVIGPGTEVIAGEGS 124
Query: 100 VVVPGFIDSHVHFI 113
+V G IDSH+HFI
Sbjct: 125 IVTAGGIDSHIHFI 138
>sp|Q1IBP0|URE1_PSEE4 Urease subunit alpha OS=Pseudomonas entomophila (strain L48)
GN=ureC PE=3 SV=1
Length = 567
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V GT V+ +GK
Sbjct: 67 DLVLTNALII--DHWGIVKADIGVKHGRIAAIGKAGNPDVQPGVSVPVGPGTEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G IDSH+HFI
Sbjct: 125 IVTAGGIDSHIHFI 138
>sp|Q0VKY1|URE1_ALCBS Urease subunit alpha OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=ureC PE=3 SV=1
Length = 567
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
DLV+TN +I D + + IKNGRI ++G V + GT+V+ +G
Sbjct: 67 DLVITNALIL--DYWGIVKADIGIKNGRIAAIGKAGNPDVQPNVDIIVGPGTDVIAGEGS 124
Query: 100 VVVPGFIDSHVHFI 113
++ G IDSH+HFI
Sbjct: 125 IITAGGIDSHIHFI 138
>sp|A3CL31|HUTI_STRSV Imidazolonepropionase OS=Streptococcus sanguinis (strain SK36)
GN=hutI PE=3 SV=1
Length = 421
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+A+K+G+I++VG+ L T + + +GK+ PG ID H H + GG
Sbjct: 39 IAVKDGKILAVGSGEPDASLVGPDTKIQSYEGKIATPGLIDCHTHLVYGG 88
>sp|P42873|URE1_STAXY Urease subunit alpha OS=Staphylococcus xylosus GN=ureC PE=1 SV=3
Length = 571
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
ADLV+TN +I D ++ AD + +KNG I+ +G V + T++++ +G
Sbjct: 70 ADLVITNALILDYD-KIVKAD-IGVKNGYIMKIGKAGNPDIMDNVDIIIGATTDIISAEG 127
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVHF+
Sbjct: 128 KIVTAGGIDTHVHFV 142
>sp|P58080|HUTI_STRP1 Imidazolonepropionase OS=Streptococcus pyogenes serotype M1 GN=hutI
PE=3 SV=2
Length = 421
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV--KL 124
+AIK+G IV++G+ +L T + + +GK+ PG ID H H + GG + KL
Sbjct: 39 IAIKDGLIVALGSGEPDAELVGTQTIMRSYKGKIATPGIIDCHTHLVYGGSREHEFAKKL 98
Query: 125 RGVSHKD 131
GVS+ D
Sbjct: 99 AGVSYLD 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,018,920
Number of Sequences: 539616
Number of extensions: 8599629
Number of successful extensions: 25301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 485
Number of HSP's that attempted gapping in prelim test: 24563
Number of HSP's gapped (non-prelim): 1191
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)