Query 008996
Match_columns 547
No_of_seqs 243 out of 1998
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02744 dihydrolipoyllysine-r 100.0 1E-120 3E-125 988.8 46.5 534 2-547 1-539 (539)
2 KOG0557 Dihydrolipoamide acety 100.0 9E-97 2E-101 768.4 33.8 443 100-547 20-470 (470)
3 PRK05704 dihydrolipoamide succ 100.0 2.9E-94 6.3E-99 766.7 41.7 400 119-547 3-405 (407)
4 TIGR01347 sucB 2-oxoglutarate 100.0 6.8E-94 1.5E-98 762.6 42.3 400 119-547 1-401 (403)
5 TIGR02927 SucB_Actino 2-oxoglu 100.0 4E-93 8.6E-98 789.4 43.6 428 116-545 133-585 (590)
6 TIGR01349 PDHac_trf_mito pyruv 100.0 3.2E-91 6.9E-96 749.6 41.8 419 120-547 1-435 (435)
7 TIGR01348 PDHac_trf_long pyruv 100.0 3.1E-90 6.6E-95 760.9 41.8 416 119-547 117-546 (546)
8 PLN02528 2-oxoisovalerate dehy 100.0 1E-89 2.3E-94 734.1 40.5 398 121-547 1-413 (416)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 2.2E-88 4.8E-93 721.0 35.9 400 118-547 2-403 (404)
10 PLN02226 2-oxoglutarate dehydr 100.0 2.3E-85 4.9E-90 700.2 39.4 395 94-547 66-461 (463)
11 PRK11854 aceF pyruvate dehydro 100.0 1.4E-84 3E-89 727.8 42.2 411 118-547 206-633 (633)
12 PTZ00144 dihydrolipoamide succ 100.0 1.3E-83 2.9E-88 682.3 37.6 377 114-547 40-416 (418)
13 PRK11855 dihydrolipoamide acet 100.0 6.7E-82 1.5E-86 696.8 41.2 412 118-547 119-547 (547)
14 PRK11856 branched-chain alpha- 100.0 1.2E-80 2.6E-85 666.1 41.9 406 119-547 3-410 (411)
15 KOG0558 Dihydrolipoamide trans 100.0 1.5E-78 3.1E-83 607.4 25.8 398 116-547 62-471 (474)
16 KOG0559 Dihydrolipoamide succi 100.0 1.2E-76 2.5E-81 596.5 23.8 384 118-547 72-455 (457)
17 PRK14843 dihydrolipoamide acet 100.0 7.9E-76 1.7E-80 612.9 26.3 293 252-547 46-347 (347)
18 PRK11857 dihydrolipoamide acet 100.0 4.1E-75 8.8E-80 598.2 26.8 290 255-547 2-305 (306)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 6.2E-63 1.3E-67 490.8 21.5 228 316-547 3-231 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 1.2E-50 2.6E-55 450.0 28.8 222 318-541 116-350 (1228)
21 PF00364 Biotin_lipoyl: Biotin 99.7 7.3E-18 1.6E-22 139.0 8.6 74 119-193 1-74 (74)
22 PRK14875 acetoin dehydrogenase 99.7 1.8E-17 4E-22 173.0 13.0 76 118-194 2-77 (371)
23 PRK06748 hypothetical protein; 99.6 1.3E-15 2.7E-20 127.9 9.9 62 132-194 12-74 (83)
24 PRK11892 pyruvate dehydrogenas 99.6 6.4E-15 1.4E-19 160.1 15.7 83 119-201 3-85 (464)
25 PRK05889 putative acetyl-CoA c 99.5 1.9E-13 4.2E-18 111.7 9.6 61 132-193 10-70 (71)
26 cd06663 Biotinyl_lipoyl_domain 99.5 3.8E-13 8.3E-18 109.9 10.2 72 121-193 2-73 (73)
27 TIGR02927 SucB_Actino 2-oxoglu 99.4 6.6E-13 1.4E-17 148.8 13.3 78 119-197 3-80 (590)
28 PRK11854 aceF pyruvate dehydro 99.4 6E-13 1.3E-17 150.4 11.6 75 119-196 3-77 (633)
29 PRK08225 acetyl-CoA carboxylas 99.4 3.2E-12 6.9E-17 104.1 9.0 61 132-193 9-69 (70)
30 PF02817 E3_binding: e3 bindin 99.4 4.2E-13 9.1E-18 96.9 3.0 38 254-291 2-39 (39)
31 COG0511 AccB Biotin carboxyl c 99.3 2.1E-12 4.6E-17 119.4 8.2 62 131-193 77-138 (140)
32 PRK11855 dihydrolipoamide acet 99.3 1.4E-11 3E-16 137.3 11.3 76 119-196 3-78 (547)
33 PRK06549 acetyl-CoA carboxylas 99.2 2.5E-11 5.5E-16 110.5 9.4 62 131-193 68-129 (130)
34 TIGR01348 PDHac_trf_long pyruv 99.2 3.4E-11 7.3E-16 134.0 10.6 74 120-195 2-75 (546)
35 PRK05641 putative acetyl-CoA c 99.2 5.6E-11 1.2E-15 111.3 9.1 61 132-193 92-152 (153)
36 PF00302 CAT: Chloramphenicol 99.2 2.1E-09 4.6E-14 105.6 20.4 177 338-536 23-206 (206)
37 PRK07051 hypothetical protein; 99.2 9.9E-11 2.1E-15 98.0 9.2 68 119-193 4-78 (80)
38 cd06850 biotinyl_domain The bi 99.2 1.3E-10 2.7E-15 92.4 9.2 62 131-193 6-67 (67)
39 PLN02983 biotin carboxyl carri 99.1 1.2E-10 2.5E-15 116.3 8.9 61 132-193 205-272 (274)
40 PRK13757 chloramphenicol acety 99.1 3.6E-09 7.8E-14 104.8 18.9 178 341-541 31-214 (219)
41 TIGR00531 BCCP acetyl-CoA carb 99.1 1.8E-10 3.8E-15 108.5 8.6 60 133-193 89-155 (156)
42 cd06849 lipoyl_domain Lipoyl d 99.1 9.5E-10 2.1E-14 87.0 10.9 73 120-193 2-74 (74)
43 PRK06302 acetyl-CoA carboxylas 99.1 3.8E-10 8.2E-15 106.1 8.7 60 133-193 88-154 (155)
44 PRK14042 pyruvate carboxylase 99.0 9.1E-10 2E-14 123.0 9.9 62 132-194 533-594 (596)
45 TIGR02712 urea_carbox urea car 98.9 2.5E-09 5.4E-14 128.5 9.7 62 131-193 1139-1200(1201)
46 TIGR01108 oadA oxaloacetate de 98.9 3.6E-09 7.8E-14 118.4 7.8 59 131-190 524-582 (582)
47 PRK14040 oxaloacetate decarbox 98.8 8.7E-09 1.9E-13 115.5 9.6 61 132-193 532-592 (593)
48 TIGR01235 pyruv_carbox pyruvat 98.8 1.1E-08 2.5E-13 122.0 9.4 61 132-193 1082-1142(1143)
49 PRK09282 pyruvate carboxylase 98.7 5.7E-08 1.2E-12 109.2 9.2 61 132-193 530-590 (592)
50 PRK12999 pyruvate carboxylase; 98.5 1.9E-07 4.2E-12 112.0 9.2 61 132-193 1084-1144(1146)
51 COG4845 Chloramphenicol O-acet 98.5 9.4E-06 2E-10 78.4 17.3 183 338-545 26-217 (219)
52 COG4770 Acetyl/propionyl-CoA c 98.4 4.5E-07 9.9E-12 98.6 7.5 62 131-193 582-643 (645)
53 COG1038 PycA Pyruvate carboxyl 98.2 1.5E-06 3.4E-11 97.3 6.8 60 133-193 1088-1147(1149)
54 cd06848 GCS_H Glycine cleavage 98.2 3E-06 6.5E-11 73.3 6.0 62 119-181 16-78 (96)
55 KOG0369 Pyruvate carboxylase [ 97.9 1.6E-05 3.6E-10 87.7 7.4 61 132-193 1114-1174(1176)
56 TIGR03077 not_gcvH glycine cle 97.8 2.5E-05 5.4E-10 69.5 5.4 40 141-180 39-78 (110)
57 PRK00624 glycine cleavage syst 97.8 5.8E-05 1.3E-09 67.5 6.4 43 134-176 33-76 (114)
58 PRK14843 dihydrolipoamide acet 97.7 1.9E-05 4.1E-10 83.6 2.4 43 253-295 4-46 (347)
59 KOG0368 Acetyl-CoA carboxylase 97.7 6.6E-05 1.4E-09 88.7 6.9 65 129-195 690-754 (2196)
60 KOG0238 3-Methylcrotonyl-CoA c 97.6 0.00012 2.7E-09 79.1 7.3 60 133-193 610-669 (670)
61 PRK13380 glycine cleavage syst 97.6 0.00012 2.7E-09 68.1 6.1 60 119-179 31-91 (144)
62 TIGR00998 8a0101 efflux pump m 97.5 0.00027 5.9E-09 73.7 8.0 35 162-197 205-239 (334)
63 PRK09783 copper/silver efflux 97.4 0.00051 1.1E-08 74.4 9.5 67 131-198 130-245 (409)
64 PRK10559 p-hydroxybenzoic acid 97.4 0.00039 8.4E-09 72.6 7.3 66 131-197 54-189 (310)
65 TIGR01730 RND_mfp RND family e 97.4 0.00028 6.1E-09 72.7 6.1 66 131-197 33-169 (322)
66 PRK01202 glycine cleavage syst 97.3 0.00065 1.4E-08 62.0 7.0 52 141-193 46-104 (127)
67 PRK10476 multidrug resistance 97.2 0.00072 1.6E-08 71.4 7.3 35 162-197 209-243 (346)
68 TIGR00527 gcvH glycine cleavag 97.2 0.00048 1E-08 62.9 5.0 38 140-177 44-81 (127)
69 PRK15136 multidrug efflux syst 97.0 0.0013 2.8E-08 70.9 7.2 35 162-197 216-250 (390)
70 PRK03598 putative efflux pump 97.0 0.0012 2.6E-08 69.3 6.6 34 162-196 204-237 (331)
71 PRK09578 periplasmic multidrug 96.9 0.0017 3.7E-08 69.6 7.1 65 131-196 70-207 (385)
72 PF13533 Biotin_lipoyl_2: Biot 96.9 0.00095 2.1E-08 50.9 3.4 28 132-159 10-37 (50)
73 PF01597 GCV_H: Glycine cleava 96.7 0.0034 7.4E-08 56.9 6.4 43 134-176 32-75 (122)
74 PRK09859 multidrug efflux syst 96.7 0.0035 7.5E-08 67.2 7.5 65 132-197 69-206 (385)
75 PRK15030 multidrug efflux syst 96.6 0.0043 9.2E-08 66.9 7.4 65 132-197 73-210 (397)
76 PF13533 Biotin_lipoyl_2: Biot 96.6 0.0044 9.6E-08 47.2 5.2 34 161-195 2-35 (50)
77 PRK11578 macrolide transporter 96.6 0.0053 1.2E-07 65.4 7.5 65 132-197 69-221 (370)
78 PRK11556 multidrug efflux syst 96.5 0.0055 1.2E-07 66.6 6.8 64 131-195 94-230 (415)
79 PF12700 HlyD_2: HlyD family s 96.5 0.002 4.3E-08 66.6 3.2 26 132-158 29-54 (328)
80 COG0509 GcvH Glycine cleavage 96.3 0.0043 9.4E-08 56.6 4.0 38 139-176 46-83 (131)
81 TIGR02971 heterocyst_DevB ABC 96.1 0.011 2.5E-07 61.6 6.8 33 163-197 206-238 (327)
82 PRK12784 hypothetical protein; 96.0 0.039 8.4E-07 45.7 7.9 64 131-195 12-76 (84)
83 TIGR03309 matur_yqeB selenium- 95.9 0.023 4.9E-07 57.6 7.4 55 132-193 172-226 (256)
84 cd06253 M14_ASTE_ASPA_like_3 A 95.2 0.06 1.3E-06 56.1 8.0 57 134-193 238-297 (298)
85 TIGR00999 8a0102 Membrane Fusi 95.1 0.05 1.1E-06 54.6 6.8 36 161-197 88-123 (265)
86 TIGR01843 type_I_hlyD type I s 95.1 0.067 1.5E-06 57.3 8.1 34 163-197 273-307 (423)
87 PF13375 RnfC_N: RnfC Barrel s 95.0 0.031 6.6E-07 49.1 4.3 45 133-178 39-83 (101)
88 PRK05889 putative acetyl-CoA c 95.0 0.048 1E-06 44.3 5.2 33 163-196 4-36 (71)
89 cd06250 M14_PaAOTO_like An unc 95.0 0.068 1.5E-06 57.1 7.7 58 133-193 297-358 (359)
90 cd06251 M14_ASTE_ASPA_like_1 A 94.7 0.1 2.2E-06 54.0 8.0 56 135-193 229-286 (287)
91 PRK08225 acetyl-CoA carboxylas 94.7 0.039 8.4E-07 44.6 3.9 26 131-156 45-70 (70)
92 KOG0559 Dihydrolipoamide succi 94.6 0.26 5.6E-06 52.0 10.5 37 118-158 113-149 (457)
93 TIGR02994 ectoine_eutE ectoine 94.5 0.1 2.3E-06 55.0 7.4 56 135-193 265-324 (325)
94 cd06252 M14_ASTE_ASPA_like_2 A 94.3 0.16 3.4E-06 53.4 8.4 58 134-194 253-314 (316)
95 PRK06748 hypothetical protein; 94.1 0.077 1.7E-06 45.0 4.5 29 131-159 49-77 (83)
96 COG3608 Predicted deacylase [G 93.8 0.18 3.9E-06 53.1 7.4 61 132-195 263-326 (331)
97 COG0511 AccB Biotin carboxyl c 93.0 0.15 3.2E-06 47.4 4.8 35 161-196 70-104 (140)
98 cd06850 biotinyl_domain The bi 92.6 0.19 4.1E-06 39.2 4.3 30 164-194 2-31 (67)
99 cd06254 M14_ASTE_ASPA_like_4 A 92.4 0.29 6.3E-06 50.6 6.6 55 133-190 231-287 (288)
100 PRK07051 hypothetical protein; 92.1 0.2 4.3E-06 41.8 4.0 27 130-156 53-79 (80)
101 PF13437 HlyD_3: HlyD family s 92.1 0.23 4.9E-06 42.9 4.5 32 164-196 2-33 (105)
102 PF05896 NQRA: Na(+)-transloca 91.7 0.18 3.9E-06 51.3 4.0 50 123-179 32-83 (257)
103 PF07247 AATase: Alcohol acety 91.1 6.9 0.00015 43.0 16.0 177 344-539 251-480 (480)
104 PF09891 DUF2118: Uncharacteri 90.6 0.35 7.6E-06 45.4 4.4 46 131-176 87-133 (150)
105 TIGR02946 acyl_WS_DGAT acyltra 90.2 9 0.00019 41.5 15.7 164 345-540 232-440 (446)
106 PRK06549 acetyl-CoA carboxylas 89.7 0.62 1.4E-05 42.8 5.2 34 161-195 61-94 (130)
107 TIGR01936 nqrA NADH:ubiquinone 89.3 0.39 8.5E-06 52.8 4.3 45 132-177 37-81 (447)
108 PRK10476 multidrug resistance 88.9 0.73 1.6E-05 48.6 5.8 39 153-194 42-80 (346)
109 PF00364 Biotin_lipoyl: Biotin 88.6 0.71 1.5E-05 37.8 4.4 34 163-197 2-41 (74)
110 TIGR00998 8a0101 efflux pump m 88.5 0.65 1.4E-05 48.4 5.1 33 161-194 42-74 (334)
111 PRK05641 putative acetyl-CoA c 88.4 0.8 1.7E-05 43.2 5.1 33 162-195 85-117 (153)
112 PF00529 HlyD: HlyD family sec 87.8 0.5 1.1E-05 48.1 3.6 33 162-195 2-34 (305)
113 PRK05352 Na(+)-translocating N 87.6 0.56 1.2E-05 51.7 4.0 43 133-176 39-81 (448)
114 cd06255 M14_ASTE_ASPA_like_5 A 87.5 1.6 3.5E-05 45.3 7.2 41 135-175 241-283 (293)
115 PRK05035 electron transport co 87.5 1.1 2.4E-05 52.0 6.5 43 133-176 46-88 (695)
116 PF00529 HlyD: HlyD family sec 86.6 0.46 1E-05 48.4 2.6 29 131-159 8-36 (305)
117 TIGR01945 rnfC electron transp 86.5 0.98 2.1E-05 49.6 5.2 43 133-176 40-82 (435)
118 TIGR02971 heterocyst_DevB ABC 86.5 1.1 2.4E-05 46.7 5.4 42 153-195 5-49 (327)
119 PF07831 PYNP_C: Pyrimidine nu 86.0 0.66 1.4E-05 38.5 2.7 29 130-158 28-56 (75)
120 TIGR01235 pyruv_carbox pyruvat 86.0 1.5 3.3E-05 53.6 6.9 62 133-196 1047-1108(1143)
121 TIGR01730 RND_mfp RND family e 85.3 1.6 3.6E-05 44.7 5.9 39 154-194 20-58 (322)
122 PF04952 AstE_AspA: Succinylgl 85.2 2.6 5.6E-05 43.2 7.3 58 134-194 229-290 (292)
123 PF13437 HlyD_3: HlyD family s 84.9 1.9 4.1E-05 37.1 5.2 27 131-157 6-32 (105)
124 PF12700 HlyD_2: HlyD family s 84.7 1 2.2E-05 46.4 4.0 39 153-195 15-53 (328)
125 KOG3373 Glycine cleavage syste 84.4 0.63 1.4E-05 43.9 2.1 40 141-180 89-128 (172)
126 TIGR01843 type_I_hlyD type I s 83.9 1.8 3.9E-05 46.3 5.7 42 153-195 35-76 (423)
127 PRK11556 multidrug efflux syst 83.7 2.3 5E-05 46.3 6.4 57 136-194 63-119 (415)
128 PRK11578 macrolide transporter 83.7 2.3 5.1E-05 45.2 6.4 57 135-193 36-92 (370)
129 TIGR01000 bacteriocin_acc bact 83.5 2.2 4.7E-05 47.0 6.2 40 155-195 53-92 (457)
130 TIGR00531 BCCP acetyl-CoA carb 83.1 1.2 2.6E-05 42.1 3.4 28 129-156 129-156 (156)
131 PRK09859 multidrug efflux syst 83.0 2.8 6.2E-05 44.9 6.7 54 139-194 40-93 (385)
132 PLN02226 2-oxoglutarate dehydr 82.7 1.3 2.9E-05 48.8 4.1 29 130-158 140-168 (463)
133 TIGR03794 NHPM_micro_HlyD NHPM 82.7 2.2 4.8E-05 46.3 5.8 36 159-195 56-91 (421)
134 PRK06302 acetyl-CoA carboxylas 82.4 1.4 3E-05 41.6 3.6 27 130-156 129-155 (155)
135 PRK03598 putative efflux pump 82.1 1.9 4.1E-05 45.2 4.9 33 161-194 43-75 (331)
136 COG1726 NqrA Na+-transporting 81.8 1.6 3.5E-05 46.3 4.0 40 137-179 42-83 (447)
137 PF02749 QRPTase_N: Quinolinat 81.2 1.3 2.7E-05 37.7 2.6 23 135-157 46-68 (88)
138 PRK15136 multidrug efflux syst 81.1 2.2 4.8E-05 46.0 5.1 33 161-194 61-93 (390)
139 PRK10559 p-hydroxybenzoic acid 80.6 2.4 5.2E-05 44.3 5.0 32 162-194 48-79 (310)
140 PLN02983 biotin carboxyl carri 80.2 1.8 3.9E-05 44.3 3.7 26 131-156 248-273 (274)
141 PRK09578 periplasmic multidrug 80.0 4.4 9.5E-05 43.4 6.9 53 139-193 42-94 (385)
142 TIGR03794 NHPM_micro_HlyD NHPM 79.1 1.8 3.9E-05 47.0 3.6 30 131-160 65-94 (421)
143 PRK09294 acyltransferase PapA5 78.9 54 0.0012 35.2 14.9 91 372-473 229-347 (416)
144 COG4656 RnfC Predicted NADH:ub 78.1 1.9 4E-05 47.9 3.3 39 136-176 45-83 (529)
145 PRK14042 pyruvate carboxylase 76.0 3.7 8E-05 46.9 5.0 34 163-197 527-560 (596)
146 TIGR01000 bacteriocin_acc bact 75.1 2.6 5.6E-05 46.4 3.5 30 131-160 66-95 (457)
147 PRK15030 multidrug efflux syst 74.8 4.3 9.3E-05 43.8 5.0 42 151-194 56-97 (397)
148 PRK09439 PTS system glucose-sp 74.7 7.1 0.00015 37.5 5.9 27 132-158 100-126 (169)
149 cd00210 PTS_IIA_glc PTS_IIA, P 74.7 2.7 5.9E-05 38.3 2.9 27 132-158 78-104 (124)
150 PRK05305 phosphatidylserine de 73.6 7.9 0.00017 38.2 6.1 54 133-192 150-204 (206)
151 TIGR00830 PTBA PTS system, glu 73.5 3 6.4E-05 37.9 2.8 27 132-158 78-104 (121)
152 COG0845 AcrA Membrane-fusion p 72.9 10 0.00022 38.7 7.0 46 148-195 54-99 (372)
153 TIGR01108 oadA oxaloacetate de 72.5 5.1 0.00011 45.7 5.0 35 162-197 518-552 (582)
154 PRK14875 acetoin dehydrogenase 72.2 4.7 0.0001 42.0 4.4 29 131-159 52-80 (371)
155 PTZ00144 dihydrolipoamide succ 72.1 4.1 9E-05 44.5 4.1 29 130-158 93-121 (418)
156 PRK05704 dihydrolipoamide succ 71.7 4.7 0.0001 44.0 4.4 30 130-159 51-80 (407)
157 PRK09783 copper/silver efflux 71.7 5.7 0.00012 43.2 5.0 53 141-194 102-156 (409)
158 COG0845 AcrA Membrane-fusion p 71.7 3.5 7.6E-05 42.2 3.3 27 131-157 73-99 (372)
159 COG1566 EmrA Multidrug resista 71.4 4.6 9.9E-05 43.2 4.1 35 162-197 209-243 (352)
160 TIGR01347 sucB 2-oxoglutarate 71.4 4.8 0.0001 43.8 4.4 30 129-158 48-77 (403)
161 cd06849 lipoyl_domain Lipoyl d 70.3 5.1 0.00011 30.6 3.2 24 132-155 51-74 (74)
162 PLN02528 2-oxoisovalerate dehy 70.2 5.4 0.00012 43.6 4.5 31 129-159 46-76 (416)
163 TIGR00164 PS_decarb_rel phosph 70.0 11 0.00023 36.8 6.0 52 133-190 130-181 (189)
164 COG2190 NagE Phosphotransferas 69.6 15 0.00034 34.8 6.7 27 132-158 85-111 (156)
165 cd06663 Biotinyl_lipoyl_domain 68.7 5.9 0.00013 31.7 3.4 25 131-155 49-73 (73)
166 PRK09439 PTS system glucose-sp 68.5 12 0.00027 35.8 6.0 18 175-193 106-123 (169)
167 PRK14040 oxaloacetate decarbox 68.4 7 0.00015 44.7 5.0 34 161-195 524-557 (593)
168 COG4072 Uncharacterized protei 67.3 11 0.00025 34.7 5.1 45 131-175 98-143 (161)
169 PF02666 PS_Dcarbxylase: Phosp 67.2 10 0.00022 37.1 5.3 58 132-192 144-202 (202)
170 COG0508 AceF Pyruvate/2-oxoglu 65.5 7.4 0.00016 42.4 4.3 39 119-161 44-82 (404)
171 PF00358 PTS_EIIA_1: phosphoen 65.5 13 0.00027 34.3 5.2 17 176-193 89-105 (132)
172 PF00358 PTS_EIIA_1: phosphoen 65.4 2.4 5.2E-05 39.0 0.5 27 132-158 82-108 (132)
173 cd00210 PTS_IIA_glc PTS_IIA, P 65.4 17 0.00037 33.1 6.0 21 172-193 81-101 (124)
174 COG4770 Acetyl/propionyl-CoA c 65.1 8.1 0.00018 43.5 4.5 34 162-196 576-609 (645)
175 PRK09282 pyruvate carboxylase 64.0 9.7 0.00021 43.6 5.1 34 161-195 522-555 (592)
176 TIGR01995 PTS-II-ABC-beta PTS 63.2 9.1 0.0002 44.0 4.7 27 132-158 542-568 (610)
177 TIGR00830 PTBA PTS system, glu 62.4 20 0.00043 32.5 5.8 20 173-193 82-101 (121)
178 TIGR02712 urea_carbox urea car 61.3 10 0.00022 47.0 4.9 34 162-196 1133-1166(1201)
179 TIGR01349 PDHac_trf_mito pyruv 59.9 11 0.00024 41.4 4.5 29 131-159 49-78 (435)
180 COG2190 NagE Phosphotransferas 59.6 20 0.00042 34.1 5.4 23 170-193 86-108 (156)
181 TIGR02645 ARCH_P_rylase putati 59.3 15 0.00033 41.0 5.4 44 153-197 405-472 (493)
182 PRK09824 PTS system beta-gluco 59.2 18 0.00039 41.7 6.1 27 132-158 558-584 (627)
183 COG1566 EmrA Multidrug resista 56.6 16 0.00036 39.1 4.9 33 161-194 53-85 (352)
184 COG0157 NadC Nicotinate-nucleo 55.9 11 0.00024 38.9 3.4 24 134-157 64-87 (280)
185 PRK11892 pyruvate dehydrogenas 54.7 14 0.00031 41.0 4.2 31 129-159 50-81 (464)
186 PRK12999 pyruvate carboxylase; 53.7 16 0.00035 45.1 4.9 34 162-196 1077-1110(1146)
187 PRK14844 bifunctional DNA-dire 51.9 22 0.00048 46.9 5.6 19 137-155 2423-2441(2836)
188 PRK03934 phosphatidylserine de 50.8 26 0.00057 35.9 5.2 55 134-193 211-265 (265)
189 TIGR02644 Y_phosphoryl pyrimid 50.8 13 0.00028 40.6 3.0 42 154-196 326-398 (405)
190 PRK04350 thymidine phosphoryla 50.5 26 0.00056 39.2 5.4 42 155-197 399-464 (490)
191 TIGR02643 T_phosphoryl thymidi 50.4 25 0.00053 38.8 5.1 40 157-197 335-405 (437)
192 TIGR03327 AMP_phos AMP phospho 49.9 26 0.00056 39.3 5.2 42 155-197 408-473 (500)
193 cd01134 V_A-ATPase_A V/A-type 49.4 40 0.00087 36.3 6.3 54 139-195 54-110 (369)
194 cd01572 QPRTase Quinolinate ph 49.1 18 0.0004 37.1 3.7 26 132-157 56-81 (268)
195 PRK11856 branched-chain alpha- 48.4 23 0.00049 38.5 4.5 31 130-160 51-81 (411)
196 PRK08072 nicotinate-nucleotide 48.2 18 0.00038 37.5 3.4 22 136-157 66-87 (277)
197 PRK05820 deoA thymidine phosph 47.8 29 0.00062 38.4 5.1 40 157-197 336-406 (440)
198 PRK06078 pyrimidine-nucleoside 46.9 30 0.00066 38.1 5.1 41 155-196 329-400 (434)
199 COG1155 NtpA Archaeal/vacuolar 46.7 50 0.0011 37.2 6.7 57 140-198 122-180 (588)
200 cd06253 M14_ASTE_ASPA_like_3 A 45.1 26 0.00057 36.5 4.2 34 161-196 229-262 (298)
201 PRK06543 nicotinate-nucleotide 44.7 22 0.00047 37.0 3.5 23 135-157 66-88 (281)
202 cd06255 M14_ASTE_ASPA_like_5 A 44.6 34 0.00073 35.5 4.9 35 161-197 231-265 (293)
203 PF01551 Peptidase_M23: Peptid 44.5 42 0.0009 28.3 4.7 56 130-195 19-74 (96)
204 TIGR01042 V-ATPase_V1_A V-type 44.5 44 0.00095 38.2 6.0 66 121-195 106-179 (591)
205 PLN02744 dihydrolipoyllysine-r 44.4 24 0.00051 40.0 4.0 28 130-157 161-189 (539)
206 PRK06096 molybdenum transport 44.1 22 0.00048 36.9 3.4 22 135-156 62-83 (284)
207 PRK05742 nicotinate-nucleotide 44.0 22 0.00049 36.8 3.4 22 136-157 68-89 (277)
208 cd01573 modD_like ModD; Quinol 44.0 22 0.00049 36.6 3.4 24 134-157 56-79 (272)
209 cd06254 M14_ASTE_ASPA_like_4 A 43.3 32 0.00068 35.6 4.4 35 160-196 222-256 (288)
210 COG4908 Uncharacterized protei 43.1 4.1E+02 0.0089 29.3 12.7 64 371-445 237-317 (439)
211 cd01568 QPRTase_NadC Quinolina 42.8 24 0.00051 36.3 3.4 25 133-157 56-80 (269)
212 TIGR03309 matur_yqeB selenium- 42.6 31 0.00068 35.3 4.1 33 161-195 164-196 (256)
213 PRK07428 nicotinate-nucleotide 41.8 25 0.00055 36.6 3.5 23 135-157 73-95 (288)
214 PRK06978 nicotinate-nucleotide 41.3 26 0.00057 36.6 3.5 22 135-156 83-104 (294)
215 TIGR02645 ARCH_P_rylase putati 41.3 24 0.00052 39.5 3.3 32 126-157 439-470 (493)
216 PRK05848 nicotinate-nucleotide 41.3 26 0.00057 36.2 3.4 22 136-157 60-81 (273)
217 PRK10255 PTS system N-acetyl g 41.2 36 0.00079 39.4 4.9 29 132-160 578-606 (648)
218 cd06251 M14_ASTE_ASPA_like_1 A 40.9 36 0.00078 35.1 4.4 35 160-196 218-252 (287)
219 TIGR02643 T_phosphoryl thymidi 40.8 23 0.0005 39.0 3.1 29 128-156 374-402 (437)
220 cd06250 M14_PaAOTO_like An unc 40.8 40 0.00087 36.1 4.9 34 162-197 290-323 (359)
221 PRK09016 quinolinate phosphori 40.8 27 0.00059 36.6 3.4 23 135-157 86-108 (296)
222 PRK07896 nicotinate-nucleotide 40.7 27 0.00059 36.4 3.4 23 135-157 77-99 (289)
223 PRK12784 hypothetical protein; 40.6 41 0.00089 28.3 3.7 29 132-160 51-79 (84)
224 PLN02716 nicotinate-nucleotide 40.3 27 0.00059 36.7 3.4 24 134-157 78-101 (308)
225 COG0213 DeoA Thymidine phospho 40.2 50 0.0011 36.1 5.4 43 154-197 329-402 (435)
226 PRK04350 thymidine phosphoryla 40.2 26 0.00056 39.2 3.4 32 126-157 431-462 (490)
227 cd06252 M14_ASTE_ASPA_like_2 A 39.5 54 0.0012 34.4 5.6 36 159-196 242-277 (316)
228 TIGR03327 AMP_phos AMP phospho 39.4 26 0.00057 39.2 3.2 32 126-157 440-471 (500)
229 PRK06106 nicotinate-nucleotide 39.0 30 0.00065 36.0 3.4 24 134-157 70-93 (281)
230 PRK05820 deoA thymidine phosph 38.9 26 0.00055 38.7 3.1 30 128-157 375-404 (440)
231 PRK08385 nicotinate-nucleotide 38.4 31 0.00067 35.8 3.4 23 135-157 59-81 (278)
232 TIGR00078 nadC nicotinate-nucl 38.2 31 0.00068 35.4 3.4 22 136-157 56-77 (265)
233 PF07831 PYNP_C: Pyrimidine nu 37.6 48 0.001 27.4 3.8 29 167-198 30-58 (75)
234 COG1038 PycA Pyruvate carboxyl 37.5 26 0.00056 41.3 2.9 32 164-196 1082-1113(1149)
235 TIGR02994 ectoine_eutE ectoine 37.5 43 0.00093 35.4 4.4 33 161-195 255-287 (325)
236 PRK03140 phosphatidylserine de 37.3 41 0.00089 34.4 4.1 51 140-192 207-257 (259)
237 PF01551 Peptidase_M23: Peptid 37.1 28 0.0006 29.4 2.5 24 135-158 52-75 (96)
238 TIGR01043 ATP_syn_A_arch ATP s 36.8 70 0.0015 36.6 6.1 54 139-195 120-176 (578)
239 TIGR01334 modD putative molybd 36.4 37 0.00081 35.2 3.7 23 135-157 61-83 (277)
240 PRK06078 pyrimidine-nucleoside 35.2 32 0.00068 38.0 3.1 30 130-159 372-401 (434)
241 PRK04192 V-type ATP synthase s 35.2 78 0.0017 36.3 6.2 57 139-198 123-182 (586)
242 KOG0369 Pyruvate carboxylase [ 35.1 30 0.00066 39.9 2.9 34 163-197 1108-1141(1176)
243 KOG0238 3-Methylcrotonyl-CoA c 35.1 32 0.00069 38.5 3.0 32 164-196 604-635 (670)
244 TIGR00163 PS_decarb phosphatid 34.7 43 0.00094 33.8 3.8 48 143-192 189-236 (238)
245 TIGR02644 Y_phosphoryl pyrimid 34.7 34 0.00073 37.4 3.1 28 130-157 370-397 (405)
246 PLN00140 alcohol acetyltransfe 34.4 40 0.00087 36.9 3.8 31 512-542 148-178 (444)
247 PLN02663 hydroxycinnamoyl-CoA: 33.9 44 0.00095 36.3 3.9 30 512-541 145-174 (431)
248 COG3608 Predicted deacylase [G 33.4 73 0.0016 33.9 5.3 43 150-196 247-289 (331)
249 PRK10255 PTS system N-acetyl g 32.5 75 0.0016 36.9 5.6 58 132-193 506-601 (648)
250 TIGR00999 8a0102 Membrane Fusi 32.3 66 0.0014 32.0 4.7 26 131-156 95-120 (265)
251 PF06898 YqfD: Putative stage 32.0 55 0.0012 35.4 4.2 23 131-153 196-225 (385)
252 COG4072 Uncharacterized protei 30.5 1E+02 0.0022 28.7 4.9 43 146-200 87-129 (161)
253 PF02458 Transferase: Transfer 29.8 58 0.0013 34.9 4.0 31 512-542 147-177 (432)
254 TIGR01995 PTS-II-ABC-beta PTS 29.7 93 0.002 35.9 5.8 57 132-193 470-565 (610)
255 PRK09824 PTS system beta-gluco 29.3 90 0.002 36.2 5.6 57 132-193 486-581 (627)
256 PF09891 DUF2118: Uncharacteri 29.3 59 0.0013 30.7 3.4 45 145-201 75-119 (150)
257 PRK00044 psd phosphatidylserin 29.2 64 0.0014 33.5 4.0 58 134-194 224-286 (288)
258 PRK08662 nicotinate phosphorib 29.1 51 0.0011 35.2 3.3 25 132-158 69-93 (343)
259 PLN02481 Omega-hydroxypalmitat 28.7 62 0.0013 35.3 4.0 30 512-541 158-187 (436)
260 cd06910 M14_ASTE_ASPA_like_7 A 28.2 84 0.0018 32.2 4.6 28 141-172 227-255 (272)
261 KOG0557 Dihydrolipoamide acety 28.1 53 0.0012 36.3 3.3 30 167-197 50-79 (470)
262 PRK07188 nicotinate phosphorib 27.7 67 0.0014 34.5 3.9 23 135-157 72-94 (352)
263 PF06898 YqfD: Putative stage 27.4 86 0.0019 33.9 4.8 52 132-191 167-225 (385)
264 TIGR02876 spore_yqfD sporulati 27.0 90 0.002 33.8 4.8 47 139-185 208-254 (382)
265 PRK06559 nicotinate-nucleotide 26.6 62 0.0013 33.8 3.3 25 133-157 70-96 (290)
266 PRK11536 6-N-hydroxylaminopuri 26.3 50 0.0011 33.2 2.5 71 120-193 78-163 (223)
267 PF05896 NQRA: Na(+)-transloca 26.2 53 0.0012 33.7 2.7 31 161-192 29-59 (257)
268 KOG1668 Elongation factor 1 be 25.9 37 0.00079 34.2 1.4 28 136-163 180-207 (231)
269 PRK14698 V-type ATP synthase s 25.7 1.4E+02 0.003 36.7 6.5 67 120-195 106-179 (1017)
270 PF13375 RnfC_N: RnfC Barrel s 25.3 1.2E+02 0.0027 26.5 4.5 47 145-193 14-61 (101)
271 CHL00117 rpoC2 RNA polymerase 25.2 76 0.0017 39.9 4.2 36 137-172 405-448 (1364)
272 PF07247 AATase: Alcohol acety 25.0 72 0.0016 35.0 3.7 33 511-543 140-172 (480)
273 PRK10871 nlpD lipoprotein NlpD 24.6 42 0.0009 35.5 1.7 18 139-156 273-290 (319)
274 COG2258 Uncharacterized protei 24.3 85 0.0018 31.3 3.6 71 121-194 76-161 (210)
275 PF02749 QRPTase_N: Quinolinat 24.3 1.6E+02 0.0034 24.8 4.9 36 159-195 17-68 (88)
276 COG0298 HypC Hydrogenase matur 23.3 3.6E+02 0.0077 22.9 6.5 56 485-540 18-73 (82)
277 PLN03157 spermidine hydroxycin 22.5 91 0.002 34.1 3.9 30 512-541 146-175 (447)
278 COG0213 DeoA Thymidine phospho 22.3 75 0.0016 34.8 3.0 28 130-157 373-400 (435)
279 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 22.0 55 0.0012 27.0 1.6 54 138-194 2-66 (86)
280 cd00516 PRTase_typeII Phosphor 21.8 90 0.0019 31.8 3.5 26 132-157 48-73 (281)
281 PF07687 M20_dimer: Peptidase 21.5 97 0.0021 26.2 3.1 29 513-541 78-106 (111)
No 1
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=1.3e-120 Score=988.79 Aligned_cols=534 Identities=77% Similarity=1.143 Sum_probs=446.1
Q ss_pred cchhhhhhcchhhhchhhhccccccceEEeecCCCcC---CcccchhccccccccccceeecccCcccceeEeeeecccc
Q 008996 2 AYASHIINHSKKLKNVSNLLWHENAVLVRWFSNDAVS---SRDDLLKIHRHVYVPVESERVINSSAISSVSSVGVFKKKF 78 (547)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
+||+|||||||||||++|+|+|||+.+||||||++|+ |++++++.+++. ...+.+++ ..++++.|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~ 72 (539)
T PLN02744 1 AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAKRRGYP--PLERRSQP------KVSSLGLFGSNI 72 (539)
T ss_pred CchHHHhhhchhhcchHHHhcccccceEEEecCCCccCcccccchhhcccCC--cccccccc------ccccccccccch
Confidence 5899999999999999999999999999999999999 999998887764 33333333 567788999999
Q ss_pred chhhhccCCccccccccccccccccccccccccCCCCCCceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 79 CSVARKAGSPIAGSFLNRGFACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
||++++.+.|++..++++.++|+++.+.|+|++.+++|++++|+||+||++|+||+|.+|+|++||.|++||+||+||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 73 SRTARKNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred hhhhhhcCCccccchhhhccccccccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 008996 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPIST 238 (547)
Q Consensus 159 Ka~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (547)
|+++||+||.+|+|.+|++++|++.|++|++|+++.+++++..+++++.++..+.++.+++ .++++.+..+..+++.+.
T Consensus 153 Ka~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (539)
T PLN02744 153 KATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKA-KPSPPPPKEEEVEKPASS 231 (539)
T ss_pred cceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEccCccccccccccccccccccccccc-cCCCCCcccccccCCCCC
Confidence 9999999999999999999999536999999998866554433222211111000000000 000000000000011111
Q ss_pred CCCCCCCC-CCCCCCCccccChhhhhhhhhcCCCCCcccccCCCCccchhcHHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Q 008996 239 SEPKASKP-SAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDY 317 (547)
Q Consensus 239 ~~~~~~~~-~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~GTGp~GrItk~DV~~~la~~~~~~~a~~~a~~~~~~~~~~~ 317 (547)
+++....+ .+...+.++++||+||+||+||||||+.|+||||+|||+++||++|+++.....+++.+ .....+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~--~~~~~~~~~~ 309 (539)
T PLN02744 232 PEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPS--TDSKAPALDY 309 (539)
T ss_pred cccccccccccccccccccCCchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCC--cccCCCCCcc
Confidence 11101010 11122346889999999999999999999999999999999999998642211111100 0001111124
Q ss_pred cccccchhhhhhhhhcccccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCcee
Q 008996 318 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSW 397 (547)
Q Consensus 318 ~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~ 397 (547)
.++|+++|||.||++|++|++++||||++.++|+|+|+++|++++...+...|.|+|+++||+||+++||++||++|++|
T Consensus 310 ~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~ 389 (539)
T PLN02744 310 TDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSW 389 (539)
T ss_pred ccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheee
Confidence 56899999999999999999999999999999999999999999976655558899999999999999999999999999
Q ss_pred ccCcceecCcccEEEEeecCCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCC-CcCCcccE
Q 008996 398 ADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLG-GPFGIKQF 476 (547)
Q Consensus 398 ~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG-~~~G~~~~ 476 (547)
+++.|+++++|||||||++++||+||||+|+|+|||.||++++++|++++|+|+|+++||+||||||||+| + ||+.+|
T Consensus 390 ~~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~-~G~~~f 468 (539)
T PLN02744 390 TDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGP-FGIKQF 468 (539)
T ss_pred ccCcEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcc-ccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 8 999999
Q ss_pred EEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 477 CAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 477 tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||||||||+||||+|+++++|++...+|++++|++|+||||||||||||++||+||++|+++||||+.|||
T Consensus 469 tpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 469 CAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred eccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 99999999999999999999987434789999999999999999999999999999999999999999886
No 2
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=9e-97 Score=768.41 Aligned_cols=443 Identities=52% Similarity=0.830 Sum_probs=374.9
Q ss_pred ccccccccccccCCCCCCceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCC
Q 008996 100 CSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (547)
Q Consensus 100 ~~~~~~~r~~~~~~~~~~~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~ 179 (547)
+....+.+.+++...++.|++|.||.|+++|+||+|++|.++|||++++||+||||||||++|++|++++|||+||+++|
T Consensus 20 ~~~~~~~~~~~~a~~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~E 99 (470)
T KOG0557|consen 20 CTSVKTKCAHHSASKLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEE 99 (470)
T ss_pred hcccchhhhccccccCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeecc
Confidence 33333444444444499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeCCCEEEEEeccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccCh
Q 008996 180 GSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASP 259 (547)
Q Consensus 180 G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP 259 (547)
|.+.|+||.+||+++++++++++++++.++++..+..++++.+ ++++.....++|.+.+.+..+++..+..++|+++||
T Consensus 100 GskdvpVGk~Iaiive~e~di~~~k~~k~~~s~~~~~~~~~~~-~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP 178 (470)
T KOG0557|consen 100 GSKDVPVGKPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAAPP-PAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASP 178 (470)
T ss_pred CcccccCCCceEEEecccccHHHhhccccccccccCCcccCCC-CCCCcccccCCCCCCccccccccCCcCCCCceecCh
Confidence 9779999999999999999999998876643222222222211 111111122223222233222222222367999999
Q ss_pred hhhhhhhhcCCCCCcccccCCCCccchhcHHHHHHhcCCCCCCC------CCCCCCCCCCCCCccccccchhhhhhhhhc
Q 008996 260 VARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAK------APKGKDVAAPALDYVDIPHSQIRKITASRL 333 (547)
Q Consensus 260 ~aR~lA~e~gIDL~~V~GTGp~GrItk~DV~~~la~~~~~~~a~------~~a~~~~~~~~~~~~~~p~s~iRk~iA~~m 333 (547)
+||+||+|+|+|+++|.||||+|||++.||+.|++..+.+.... ++++..+..+...|+++|++.||+.+++||
T Consensus 179 ~Ak~la~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl 258 (470)
T KOG0557|consen 179 LAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRL 258 (470)
T ss_pred HHHHHHHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhh
Confidence 99999999999999999999999999999999998644321111 111111222334589999999999999999
Q ss_pred ccccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceecc-CcceecCcccEEE
Q 008996 334 LFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD-EYIRQFKNVNINV 412 (547)
Q Consensus 334 ~~S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~-~~i~~~~~vnIgv 412 (547)
++|+++|||+|++.+++++.|+++|+++| + ++++.++|+++||+||.+.||+++|++|++|++ ..|+++.+|||++
T Consensus 259 ~eSk~~IPh~yvt~~~~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~Vdisv 335 (470)
T KOG0557|consen 259 LESKQTIPHYYVTVDVNLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISV 335 (470)
T ss_pred hhhhcCCCeEEEeeeeehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhh
Confidence 99999999999999999999999999998 2 246889999999999999999999999999998 7899999999999
Q ss_pred EeecCCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEecc
Q 008996 413 AVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGS 492 (547)
Q Consensus 413 AV~~~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~ 492 (547)
||++++||++|+|+|+|.+.+.+|++++.+|++++|.|+|.|++|+||||||||||| ||++.|++||||||.|||++|.
T Consensus 336 AVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGm-f~V~~F~AiinPpq~~ILavg~ 414 (470)
T KOG0557|consen 336 AVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGM-FGVDMFTAIINPPQADILAVGA 414 (470)
T ss_pred eeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccC-cCccccccccCCchhhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeeeeec-CCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 493 AEKRVVPG-LGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 493 i~~r~v~~-~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
.++..|++ ..++.+.+..+|+||||+|||++||+.|++||+.|+++||||+.|||
T Consensus 415 ~~~~~v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 415 ATPSVVPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred CccccccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 99988852 35678999999999999999999999999999999999999999986
No 3
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=2.9e-94 Score=766.75 Aligned_cols=400 Identities=33% Similarity=0.488 Sum_probs=337.3
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
++|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTVGQVLGRIDEGAA 81 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 589999999999999999999999999999999999999999999999999999999999997 8999999999854432
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCCccccc
Q 008996 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (547)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~GT 278 (547)
+... .++ +...+++ .+ . +. +.+... . .. ...+.+||+||+||+||||||++|+||
T Consensus 82 ~~~~----~~~-------~~~~~~~-~~--~-----~~--~~~~~~--~-~~-~~~~~asP~aR~lA~e~gidl~~v~gt 136 (407)
T PRK05704 82 AGAA----AAA-------AAAAAAA-AA--A-----PA--QAQAAA--A-AE-QSNDALSPAARKLAAENGLDASAVKGT 136 (407)
T ss_pred cccc----CCC-------CCCCCCC-CC--C-----CC--CCCCCc--c-CC-CccccCCchhhhHHhhcCCChhhCCCC
Confidence 2110 000 0000000 00 0 00 000000 0 01 113569999999999999999999999
Q ss_pred CCCCccchhcHHHHHHhcCCCCC-CCCCCCCCCC--CCCCCccccccchhhhhhhhhcccccCCCcEEEEEeecchHHHH
Q 008996 279 GPNGLIVKADIEDYLASRGKEVP-AKAPKGKDVA--APALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (547)
Q Consensus 279 Gp~GrItk~DV~~~la~~~~~~~-a~~~a~~~~~--~~~~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~ 355 (547)
|++|||+++||++|++....... ++.+.....+ .+....+.+|+++|||.|+++|..|++++||||+..++|+++|+
T Consensus 137 G~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~ 216 (407)
T PRK05704 137 GKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVM 216 (407)
T ss_pred CCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHH
Confidence 99999999999999753211110 0000000000 01111235799999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCCCeEEeEEccCCCCCHHH
Q 008996 356 GLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 435 (547)
Q Consensus 356 ~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~e 435 (547)
++|++++..+....|.|+|+++||+||+++||++||.+|++|+++.+++++++||||||++++||+||||+|+|+|||.|
T Consensus 217 ~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~e 296 (407)
T PRK05704 217 DLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAE 296 (407)
T ss_pred HHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHH
Confidence 99999997655545889999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEE
Q 008996 436 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVT 515 (547)
Q Consensus 436 Ia~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~lt 515 (547)
|++++++|++++|+|+|+++||+||||||||+|+ ||+.+|+|||||||+||||+|+++++|++ .+|++++|++|+||
T Consensus 297 Ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~-~G~~~~tpiIn~pq~aILgvG~i~~~pv~--~~g~i~~r~~~~ls 373 (407)
T PRK05704 297 IEKKIAELAKKARDGKLSIEELTGGTFTITNGGV-FGSLMSTPIINPPQSAILGMHKIKERPVA--VNGQIVIRPMMYLA 373 (407)
T ss_pred HHHHHHHHHHHHHcCCCChHHcCCceEEEecCCc-ccccceeccccCCcEEEEEcccceEEeEE--ECCEEEEEEEEEEE
Confidence 9999999999999999999999999999999999 99999999999999999999999999987 37899999999999
Q ss_pred EeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 516 LSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 516 lt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||||||||||++||+||++|+++||||+.||+
T Consensus 374 ls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 405 (407)
T PRK05704 374 LSYDHRIIDGKEAVGFLVTIKELLEDPERLLL 405 (407)
T ss_pred EEechhhhCcHHHHHHHHHHHHHhhCHHHHhh
Confidence 99999999999999999999999999998875
No 4
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=6.8e-94 Score=762.57 Aligned_cols=400 Identities=32% Similarity=0.496 Sum_probs=337.5
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~vG~~l~~i~~~~~ 79 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVESGQVLAILEEGND 79 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCC
Confidence 378999999999999999999999999999999999999999999999999999999999997 8999999999854322
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCCccccc
Q 008996 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (547)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~GT 278 (547)
. . +..+++ +.+ +.+.+ ... + ..+.+ . ..+.++.+||+||+||+|+||||+.|+||
T Consensus 80 ~-~-------~~~~~~--~~~--~~~~~--~~~---~-~~~~~-----~--~~~~~~~asP~aR~lA~e~gvdl~~v~gt 134 (403)
T TIGR01347 80 A-T-------AAPPAK--SGE--EKEET--PAA---S-AAAAP-----T--AAANRPSLSPAARRLAKEHGIDLSAVPGT 134 (403)
T ss_pred C-c-------cccccc--ccC--CCCCC--CCC---C-CCCCC-----c--CccccccCCchhhhHHHHcCCChhhCCCC
Confidence 1 0 000000 000 00000 000 0 00000 0 11235679999999999999999999999
Q ss_pred CCCCccchhcHHHHHHhcCC-CCCCCCCCCCCCCCCCCCccccccchhhhhhhhhcccccCCCcEEEEEeecchHHHHHH
Q 008996 279 GPNGLIVKADIEDYLASRGK-EVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (547)
Q Consensus 279 Gp~GrItk~DV~~~la~~~~-~~~a~~~a~~~~~~~~~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~l 357 (547)
|++|||+++||++|++.... ..+++.+....+..+....+.+|+++|||+|+++|..|++++||||+..++|+++|+++
T Consensus 135 G~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~ 214 (403)
T TIGR01347 135 GVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMEL 214 (403)
T ss_pred CCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHH
Confidence 99999999999999753211 11100000000000011123579999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCCCeEEeEEccCCCCCHHHHH
Q 008996 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIA 437 (547)
Q Consensus 358 r~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa 437 (547)
|+++++.+..+.|.++|+++||+||+++||++||.+|++|+++.+++++++||||||++++||+||||||+|+|||.||+
T Consensus 215 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa 294 (403)
T TIGR01347 215 RKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIE 294 (403)
T ss_pred HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHH
Confidence 99999766555688999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEEEe
Q 008996 438 EEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLS 517 (547)
Q Consensus 438 ~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt 517 (547)
+++++|++++|+|+|+++||+||||||||+|+ ||+.+|+|||||||+||||+|+++++|++. +|++++|++|+||||
T Consensus 295 ~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~-~G~~~~tpiin~pq~aILgvG~i~~~pv~~--~g~i~~r~~m~lsLt 371 (403)
T TIGR01347 295 KEIADLGKKARDGKLTLEDMTGGTFTITNGGV-FGSLMSTPIINPPQSAILGMHGIKERPVAV--NGQIEIRPMMYLALS 371 (403)
T ss_pred HHHHHHHHHHHcCCCChhhcCCceEEEecCCc-CcccceeccccCCceEEEecccceEEEEEE--CCeEEEEEEEEEEEE
Confidence 99999999999999999999999999999999 999999999999999999999999999873 689999999999999
Q ss_pred ecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 518 CDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 518 ~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||||+|||++||+||++|+++||||+.||+
T Consensus 372 ~DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 401 (403)
T TIGR01347 372 YDHRLIDGKEAVTFLVTIKELLEDPRRLLL 401 (403)
T ss_pred ecchhhChHHHHHHHHHHHHHhcCHHHHHh
Confidence 999999999999999999999999998875
No 5
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=4e-93 Score=789.45 Aligned_cols=428 Identities=28% Similarity=0.419 Sum_probs=338.7
Q ss_pred CCceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
...++|+||+||++|+||+|.+|+|++||.|++||+||+|||||+++||+||++|+|.+|++++|+ .|++|++|++|.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~vG~~l~~i~~ 211 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDVGAEIAKIGD 211 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecCCCEEEEEec
Confidence 335799999999999999999999999999999999999999999999999999999999999997 8999999999865
Q ss_pred cCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC--CCcccCCCC--CCCCCCC-CC-CCCCCCCccccChhhhhhhhhcC
Q 008996 196 EEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPK--QEEVEKPIS--TSEPKAS-KP-SAASPEDRLFASPVARNLAEEHN 269 (547)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~--~~~~~~~-~~-~~~~~~~~v~aSP~aR~lA~e~g 269 (547)
++++........+...+...++.++.+...+.. ......+.. .+.+... .+ ....++.++++||+||+||+|||
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~g 291 (590)
T TIGR02927 212 AGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHG 291 (590)
T ss_pred CCCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcC
Confidence 443321100000000000000000000000000 000000000 0000000 00 01112347889999999999999
Q ss_pred CCCCcccccCCCCccchhcHHHHHHhcCC--CCCCC-----CCCCC--CCC--CC---CCCccccccchhhhhhhhhccc
Q 008996 270 VSLSSIKGTGPNGLIVKADIEDYLASRGK--EVPAK-----APKGK--DVA--AP---ALDYVDIPHSQIRKITASRLLF 335 (547)
Q Consensus 270 IDL~~V~GTGp~GrItk~DV~~~la~~~~--~~~a~-----~~a~~--~~~--~~---~~~~~~~p~s~iRk~iA~~m~~ 335 (547)
|||++|+|||++|||+++||++|+..... ..++. .++.. ... .+ ...++++|+++|||.|+++|.+
T Consensus 292 vdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~ 371 (590)
T TIGR02927 292 IDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTRE 371 (590)
T ss_pred CCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHH
Confidence 99999999999999999999999854211 11110 00000 000 01 0123467999999999999999
Q ss_pred ccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceecc--CcceecCcccEEEE
Q 008996 336 SKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVA 413 (547)
Q Consensus 336 S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~--~~i~~~~~vnIgvA 413 (547)
|++++||||++.++|+|+|+++|+++|+.+...+|.|||+++||+||+++||++||.+|++|++ +.|++++++|||||
T Consensus 372 S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvA 451 (590)
T TIGR02927 372 ALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFA 451 (590)
T ss_pred HhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEE
Confidence 9999999999999999999999999997655445889999999999999999999999999974 47999999999999
Q ss_pred eecCCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccc
Q 008996 414 VQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSA 493 (547)
Q Consensus 414 V~~~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i 493 (547)
|++++||+||||||+|+|||.+|++++++|++++|+|+|+++||+||||||||||| ||+.+|+|||||||+||||+|++
T Consensus 452 v~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~-~G~~~~tpIIn~PqvaILgvG~i 530 (590)
T TIGR02927 452 VDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGS-EGALFDTPILIPPQAAILGTGAI 530 (590)
T ss_pred EECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCC-CCccceeceecCCCeEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeeeecC-CCC--ceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccc
Q 008996 494 EKRVVPGL-GPD--QYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESM 545 (547)
Q Consensus 494 ~~r~v~~~-~~g--~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~l 545 (547)
+++|++.. .+| ++++|++|+||||||||||||++||+||++|+++||||..+
T Consensus 531 ~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~~ 585 (590)
T TIGR02927 531 VKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAFE 585 (590)
T ss_pred eEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCcccc
Confidence 99998742 233 49999999999999999999999999999999999999753
No 6
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=3.2e-91 Score=749.60 Aligned_cols=419 Identities=53% Similarity=0.865 Sum_probs=336.5
Q ss_pred EEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCee-eeCCCEEEEEeccCC
Q 008996 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEEEE 198 (547)
Q Consensus 120 ~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~-v~vG~~l~~i~~~~~ 198 (547)
+|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+ . |++|++|++|.+.++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~-~~v~vG~~l~~i~~~~~ 79 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT-KDVPVNKPIAVLVEEKE 79 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC-EEecCCCEEEEEeccCC
Confidence 36899999999999999999999999999999999999999999999999999999999997 8 999999999865433
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC---CCC--CC-CCCCCCCccccChhhhhhhhhcCCCC
Q 008996 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEP---KAS--KP-SAASPEDRLFASPVARNLAEEHNVSL 272 (547)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~-~~~~~~~~v~aSP~aR~lA~e~gIDL 272 (547)
+..............+ ++...+.. +..+...+.+...+.+ ... .. .....+.++++||+||+||+||||||
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl 156 (435)
T TIGR01349 80 DVADAFKNYKLESSAS-APKPSEIA--PTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDL 156 (435)
T ss_pred cccccccccccccccc-CCCCcccc--cCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCH
Confidence 3210000000000000 00000000 0000000000000000 000 00 00112236789999999999999999
Q ss_pred CcccccCCCCccchhcHHHHHHhcCCCCCCC--CCCCC--CCCCC--CCCccccccchhhhhhhhhcccccCCCcEEEEE
Q 008996 273 SSIKGTGPNGLIVKADIEDYLASRGKEVPAK--APKGK--DVAAP--ALDYVDIPHSQIRKITASRLLFSKQTIPHYYLT 346 (547)
Q Consensus 273 ~~V~GTGp~GrItk~DV~~~la~~~~~~~a~--~~a~~--~~~~~--~~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~ 346 (547)
+.|+|||++|||+++||++|++......+.+ .+.+. ....+ ......+||++|||.|+++|+.|++++||+|+.
T Consensus 157 ~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~ 236 (435)
T TIGR01349 157 SAVAGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVS 236 (435)
T ss_pred hHCCCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEE
Confidence 9999999999999999999986421111110 00000 00001 112345799999999999999999999999999
Q ss_pred eecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCCCeEEeEEc
Q 008996 347 VDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIR 426 (547)
Q Consensus 347 ~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~ 426 (547)
.++|+++|+++|+++++.... |.++|+++||+||+++||++||.+|++|+++.|+++++|||||||++++||+||||+
T Consensus 237 ~evd~t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~ 314 (435)
T TIGR01349 237 IECNVDKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVR 314 (435)
T ss_pred EEEEhHHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCC
Confidence 999999999999999865432 789999999999999999999999999999889999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCc-
Q 008996 427 DADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQ- 505 (547)
Q Consensus 427 ~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~- 505 (547)
|+|+|||.||++++++|++++|+|+|+++||+||||||||+|+ ||+.+|+|||||||+|||++|++.++|++. +|+
T Consensus 315 ~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~-~G~~~~tpiin~pq~aIlgvG~i~~~pv~~--~~~~ 391 (435)
T TIGR01349 315 NADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGM-FGIKDFTAIINPPQACILAVGAVEDVAVVD--NDEE 391 (435)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCc-cCccceECccCCCceEEEEcccceEEeEEe--CCcc
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999873 455
Q ss_pred --eEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 506 --YKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 506 --i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
+++|++|+||||||||+|||++||+||++|+++||||+.|||
T Consensus 392 ~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 392 KGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred ceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999999999876
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=3.1e-90 Score=760.90 Aligned_cols=416 Identities=30% Similarity=0.476 Sum_probs=336.9
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
++|+||+||+ |+||+|.+|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+++..+++
T Consensus 117 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 117 QEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPTGDLILTLSVAGS 194 (546)
T ss_pred eEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 6999999999 9999999999999999999999999999999999999999999999999997 9999999999865443
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCcc-ccChhhhhhhhhcCCCCCcccc
Q 008996 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIKG 277 (547)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~aSP~aR~lA~e~gIDL~~V~G 277 (547)
+..... .+. .+ ++..+.+++....+...+.+..+..+. ........+.++ ++||+||+||+||||||+.|+|
T Consensus 195 ~~~~~~--~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~g 267 (546)
T TIGR01348 195 TPATAP--APA-SA---QPAAQSPAATQPEPAAAPAAAKAQAPA-PQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKG 267 (546)
T ss_pred Cccccc--Ccc-cc---cccCCCCccccccccCCCCCCCccCcc-cccccccccccccCCCHHHHHHHHHcCCCHhhCCC
Confidence 211100 000 00 000000000000000000000000000 000001122356 6999999999999999999999
Q ss_pred cCCCCccchhcHHHHHHhcCC-CCCCCCCCC-C-C--CCCC-----CC-CccccccchhhhhhhhhcccccCCCcEEEEE
Q 008996 278 TGPNGLIVKADIEDYLASRGK-EVPAKAPKG-K-D--VAAP-----AL-DYVDIPHSQIRKITASRLLFSKQTIPHYYLT 346 (547)
Q Consensus 278 TGp~GrItk~DV~~~la~~~~-~~~a~~~a~-~-~--~~~~-----~~-~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~ 346 (547)
||++|||+++||++|+..... ..+.+.++. . . ...+ .. .++.+|+++|||.|+++|.+|++++||||+.
T Consensus 268 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~ 347 (546)
T TIGR01348 268 TGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF 347 (546)
T ss_pred CCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence 999999999999999853211 110000000 0 0 0001 00 1345799999999999999999999999999
Q ss_pred eecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceecc--CcceecCcccEEEEeecCCCeEEeE
Q 008996 347 VDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGLYVPV 424 (547)
Q Consensus 347 ~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~--~~i~~~~~vnIgvAV~~~~GL~vPV 424 (547)
.++|+|+|+++|+++++.... .|.|+|+++||+||+++||++||.+|++|++ +.|+++++|||||||++++||+|||
T Consensus 348 ~evdvt~l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPv 426 (546)
T TIGR01348 348 DKADITEMEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPV 426 (546)
T ss_pred EEEEcHHHHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECC
Confidence 999999999999999976554 4889999999999999999999999999984 4699999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCC
Q 008996 425 IRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPD 504 (547)
Q Consensus 425 I~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g 504 (547)
|+|+|+|||.+|++++++|++++|+|+|+++||+||||||||+|| ||+.+|+|||||||+|||++|+++++|++ .+|
T Consensus 427 i~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~-~G~~~~~piin~Pq~aIl~vg~~~~~p~~--~~~ 503 (546)
T TIGR01348 427 IKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGG-IGGTAFTPIVNAPEVAILGVSKSGMEPVW--NGK 503 (546)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCC-CCCcceECCCCCCceEEEEcccceEEeEE--ECC
Confidence 999999999999999999999999999999999999999999999 99999999999999999999999999987 367
Q ss_pred ceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 505 QYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 505 ~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
++++|++|+||||||||||||++||+||++|+++||||+.|||
T Consensus 504 ~~~~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 504 EFEPRLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred EEEEEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999999999999886
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1e-89 Score=734.12 Aligned_cols=398 Identities=29% Similarity=0.472 Sum_probs=331.3
Q ss_pred EecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCCCc
Q 008996 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (547)
Q Consensus 121 i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~~~ 200 (547)
++||+||++|+||+|.+|+|++||.|++||+||+|||||+.++++|+.+|+|.++++++|+ .|++|++|+.+..++++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~~~ 79 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKVGETLLKIMVEDSQH 79 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEeccCCcc
Confidence 4699999999999999999999999999999999999999999999999999999999997 899999999885433321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCCcccccCC
Q 008996 201 PKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGP 280 (547)
Q Consensus 201 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~GTGp 280 (547)
.. +... + .+.+..+.+. +.. +.+. . . ....+++||+||+||+||||||+.|+|||+
T Consensus 80 ~~-----~~~~-~--~~~~~~~~~~---------~~~-~~~~----~-~-~~~~~~asP~aR~lA~e~gvdl~~v~gtG~ 135 (416)
T PLN02528 80 LR-----SDSL-L--LPTDSSNIVS---------LAE-SDER----G-S-NLSGVLSTPAVRHLAKQYGIDLNDILGTGK 135 (416)
T ss_pred cc-----ccCC-C--CCCCCccCCC---------CCC-CCcc----c-c-ccCCccCChHHHHHHHHhCCCHHHCCCCCC
Confidence 10 0000 0 0000000000 000 0000 0 0 111357999999999999999999999999
Q ss_pred CCccchhcHHHHHHhcCC-CCCCCCC--CCCCC-------CCCC-C--CccccccchhhhhhhhhcccccCCCcEEEEEe
Q 008996 281 NGLIVKADIEDYLASRGK-EVPAKAP--KGKDV-------AAPA-L--DYVDIPHSQIRKITASRLLFSKQTIPHYYLTV 347 (547)
Q Consensus 281 ~GrItk~DV~~~la~~~~-~~~a~~~--a~~~~-------~~~~-~--~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~ 347 (547)
+|||+++||++|++.... ..+++.+ ..... ..+. . ..+.+|+++|||+|+++|.+|+ ++||||+..
T Consensus 136 ~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~ 214 (416)
T PLN02528 136 DGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVE 214 (416)
T ss_pred CCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEE
Confidence 999999999999853211 1010000 00000 0000 0 1235799999999999999996 999999999
Q ss_pred ecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccC--cceecCcccEEEEeecCCCeEEeEE
Q 008996 348 DICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVI 425 (547)
Q Consensus 348 ~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~--~i~~~~~vnIgvAV~~~~GL~vPVI 425 (547)
++|+++|+++|+++++... ..|.|+|+++||+||+++||++||.+|++|+++ .+++++++||||||++++||+||||
T Consensus 215 eid~~~l~~~r~~~~~~~~-~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi 293 (416)
T PLN02528 215 EINVDALVELKASFQENNT-DPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNI 293 (416)
T ss_pred EEEhHHHHHHHHHHhhhhh-hcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEeccc
Confidence 9999999999999986533 348899999999999999999999999999865 6999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCc
Q 008996 426 RDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQ 505 (547)
Q Consensus 426 ~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~ 505 (547)
+++|+||+.||++++++|++++|+|+|+++||+||||||||+|| ||+.+|+|||||||+|||++|+++++|++. .+|+
T Consensus 294 ~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~-~G~~~~tpIin~pq~aIlgvG~i~~~pv~~-~~g~ 371 (416)
T PLN02528 294 KNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGA-IGGKFGSPVLNLPEVAIIALGRIQKVPRFV-DDGN 371 (416)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCcc-ccCCceECcccCCceEEEEcccceEEeEEe-CCCc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999874 3689
Q ss_pred eEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 506 YKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 506 i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
+++|++|+||||||||||||++||+||++|+++||||+.|||
T Consensus 372 i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~lll 413 (416)
T PLN02528 372 VYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLML 413 (416)
T ss_pred EEEEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCHHHHHh
Confidence 999999999999999999999999999999999999999875
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.2e-88 Score=721.00 Aligned_cols=400 Identities=45% Similarity=0.671 Sum_probs=341.2
Q ss_pred ceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 118 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.++|+||+||++|+||+|++|+|++||+|++||+|+||||||+++||+||++|+|.+|++++|+ +|+||++|++|.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEEG 80 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC-EEcCCCeEEEEecCC
Confidence 4699999999999999999999999999999999999999999999999999999999999998 899999999996655
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCCcccc
Q 008996 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (547)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~G 277 (547)
++. +..++.++++..+.++ .++.+ .......+..+||++|+||+|+||||+++.|
T Consensus 81 ~~~-------~a~~~~~~~~~~~~~~-------------~~~~~-----~~~~~~~~~~asP~~r~la~e~gidl~~v~g 135 (404)
T COG0508 81 ADA-------PAAAEAPPEPAAAAPA-------------SAPAT-----AASAAAGRVLASPAVRRLAREAGIDLSKVKG 135 (404)
T ss_pred Ccc-------cccCcccCCccccCcC-------------cccCc-----cccccccccccCcchhhhhhhcCCCHHHcCC
Confidence 432 0000000000000000 00000 0001114678999999999999999999999
Q ss_pred cCCCCccchhcHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhcccccCCCcEEEEEeecchHHHHHH
Q 008996 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (547)
Q Consensus 278 TGp~GrItk~DV~~~la~~~~~~~a~~~a~~~~~~~~~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~l 357 (547)
||++|||+++|++.|+.......+...+...........+..+|++++||.++++|..|++++||+|...++|++.|+++
T Consensus 136 tG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~l 215 (404)
T COG0508 136 TGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMAL 215 (404)
T ss_pred cCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHH
Confidence 99999999999999987541111111110000111223456789999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccC--cceecCcccEEEEeecCCCeEEeEEccCCCCCHHH
Q 008996 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 435 (547)
Q Consensus 358 r~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~--~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~e 435 (547)
|++++..+..+ |.|+|+++|++||++.||++||.+|++|+++ .+.+++++|||+||++++||++|||+|+|++|+.+
T Consensus 216 r~~~~~~~~~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~ 294 (404)
T COG0508 216 RKKLKEEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAE 294 (404)
T ss_pred HHHhhhhhccc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHH
Confidence 99999876644 9999999999999999999999999888865 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEE
Q 008996 436 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVT 515 (547)
Q Consensus 436 Ia~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~lt 515 (547)
|++++.+|+.++|+|+|+++||+||||||||+|+ ||+..|+||||+||+||||+|++.++|++ .++++++|+||+|+
T Consensus 295 i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~-~g~~~~tpiin~Pq~aILgv~~~~~rpv~--~~~~i~~~~mm~ls 371 (404)
T COG0508 295 IAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGM-FGSLMFTPIINPPQVAILGVGAIEERPVV--VGGEIVVRPMMYLS 371 (404)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCc-cccceecccccChhHheeeccccccCceE--ecCceeeEeeEeec
Confidence 9999999999999999999999999999999999 99999999999999999999999999988 35699999999999
Q ss_pred EeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 516 LSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 516 lt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||||||+|||+++++||.++|++||||..||+
T Consensus 372 ls~DHRviDGa~aa~Fl~~ik~~le~p~~ll~ 403 (404)
T COG0508 372 LSYDHRVIDGAEAARFLVALKELLEDPERLLL 403 (404)
T ss_pred ccccccccccHHHHHHHHHHHHHhcChhhhhc
Confidence 99999999999999999999999999999875
No 10
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=2.3e-85 Score=700.24 Aligned_cols=395 Identities=29% Similarity=0.420 Sum_probs=320.3
Q ss_pred ccccccccccccccccccCCCCCCc-eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEE
Q 008996 94 LNRGFACSKVHLKRGFSSDSGLPPH-QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYL 172 (547)
Q Consensus 94 ~~~~~~~~~~~~~r~~~~~~~~~~~-~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l 172 (547)
.+++++.++..+.|+|+..+..... .+|+||+||++|+||+|.+|+|++||.|++||+||+|||||+++||+||++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v 145 (463)
T PLN02226 66 ISRSASLVSSTLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVI 145 (463)
T ss_pred cCCchhhhhhhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEE
Confidence 4455555555555555543321111 699999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCeeeeCCCEEEEEeccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 008996 173 AKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPE 252 (547)
Q Consensus 173 ~ki~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (547)
.+|++++|+ .|++|++|++|.+.+++.+ .+.. ....|. .. .+++.. +.+ . .. .
T Consensus 146 ~~ilv~eGd-~V~vG~~L~~I~~~~~~~~-----~~~~--~~~~~~-----~~------~~~~~~-~~~-----~-~~-~ 198 (463)
T PLN02226 146 QEFLVKEGD-TVEPGTKVAIISKSEDAAS-----QVTP--SQKIPE-----TT------DPKPSP-PAE-----D-KQ-K 198 (463)
T ss_pred EEEEeCCCC-EecCCCEEEEeccCCcccc-----ccCc--cCCCCC-----CC------CCCCCC-ccc-----c-cc-c
Confidence 999999997 9999999999853322110 0000 000000 00 000000 000 0 00 1
Q ss_pred CccccChhhhhhhhhcCCCCCcccccCCCCccchhcHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhh
Q 008996 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASR 332 (547)
Q Consensus 253 ~~v~aSP~aR~lA~e~gIDL~~V~GTGp~GrItk~DV~~~la~~~~~~~a~~~a~~~~~~~~~~~~~~p~s~iRk~iA~~ 332 (547)
.++.++|++|+.+ .++|+.+.- . +...+ ...+....+.+|+++|||.||++
T Consensus 199 ~~v~asp~~r~~~----------~~~~~~~~~--------------~-~~~~~----~~~~~~~~~~ipls~~Rk~IA~~ 249 (463)
T PLN02226 199 PKVESAPVAEKPK----------APSSPPPPK--------------Q-SAKEP----QLPPKERERRVPMTRLRKRVATR 249 (463)
T ss_pred cCCCcchhhcccc----------CCCCCCCCc--------------c-cccCc----ccccCCCceeeeChHHHHHHHHH
Confidence 2567899887643 234443310 0 00000 00001113457999999999999
Q ss_pred cccccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEE
Q 008996 333 LLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINV 412 (547)
Q Consensus 333 m~~S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgv 412 (547)
|..|++++||||+..++|+++|+++|+++++....+.|.|+|+++||+||+++||++||++|++|+++.|+++++|||||
T Consensus 250 M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGv 329 (463)
T PLN02226 250 LKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISI 329 (463)
T ss_pred HHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEE
Confidence 99999999999999999999999999999976655568899999999999999999999999999998999999999999
Q ss_pred EeecCCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEecc
Q 008996 413 AVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGS 492 (547)
Q Consensus 413 AV~~~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~ 492 (547)
||++++||+||||+|+|+|||.||++++++|++++|+|+|+++||+||||||||+|+ ||+.+|+|||||||+||||+|+
T Consensus 330 AV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~-~Gv~~ftPIInpPqvAILgvG~ 408 (463)
T PLN02226 330 AVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGV-YGSLISTPIINPPQSAILGMHS 408 (463)
T ss_pred EEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCc-ccccceeccccCCcEEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 493 AEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 493 i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
++++|++ .+|++++|++|+||||||||+|||++||+||++|+++||||+.||+
T Consensus 409 i~~~pvv--~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl 461 (463)
T PLN02226 409 IVSRPMV--VGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLL 461 (463)
T ss_pred ceEEEEE--ECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence 9999997 4789999999999999999999999999999999999999998875
No 11
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=1.4e-84 Score=727.78 Aligned_cols=411 Identities=32% Similarity=0.496 Sum_probs=335.3
Q ss_pred ceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 118 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.++|+||+|| |+||+|.+|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|+.+.+++
T Consensus 206 ~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKTGSLIMRFEVEG 282 (633)
T ss_pred ceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence 4799999999 9999999999999999999999999999999999999999999999999997 999999999986443
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC-CCCCCCCCCCccccChhhhhhhhhcCCCCCccc
Q 008996 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKA-SKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (547)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~ 276 (547)
++.... +.+. .++.++ +.+. .. +.+.+.+.+.. ........+.++++||+||+||+||||||+.|+
T Consensus 283 ~~~~~~----~~~~-~~~~~~---~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~ 349 (633)
T PRK11854 283 AAPAAA----PAKQ-EAAAPA---PAAA---KA--EAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVK 349 (633)
T ss_pred CCcccc----cccc-CCCCCC---cccc---cc--CCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcC
Confidence 321100 0000 000000 0000 00 00000000000 000001123467899999999999999999999
Q ss_pred ccCCCCccchhcHHHHHHhcCC-C--CCCCCCCC--CC--CCCC-----CC-CccccccchhhhhhhhhcccccCCCcEE
Q 008996 277 GTGPNGLIVKADIEDYLASRGK-E--VPAKAPKG--KD--VAAP-----AL-DYVDIPHSQIRKITASRLLFSKQTIPHY 343 (547)
Q Consensus 277 GTGp~GrItk~DV~~~la~~~~-~--~~a~~~a~--~~--~~~~-----~~-~~~~~p~s~iRk~iA~~m~~S~~~iP~~ 343 (547)
|||++|||+++||++|+++... . .+.++++. .+ ...+ .. ....+|+++|||.|+++|..|++++|||
T Consensus 350 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~ 429 (633)
T PRK11854 350 GTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHV 429 (633)
T ss_pred CCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999864211 0 01100000 00 0000 00 1235799999999999999999999999
Q ss_pred EEEeecchHHHHHHHHHHhHHHHH-hcCCcccHHHHHHHHHHHHHhhCCCCCceec--cCcceecCcccEEEEeecCCCe
Q 008996 344 YLTVDICVDNLMGLRNQLNSIQEA-SAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENGL 420 (547)
Q Consensus 344 ~l~~~idv~~L~~lr~~l~~~~~~-~~g~klTi~~~liKA~a~AL~~~P~lN~~~~--~~~i~~~~~vnIgvAV~~~~GL 420 (547)
|++.++|+++|+++|++++..... ..|.++|+++||+||+++||++||++|++|+ ++.+++++++||||||++++||
T Consensus 430 ~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL 509 (633)
T PRK11854 430 TQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGL 509 (633)
T ss_pred EEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCce
Confidence 999999999999999999854322 3588999999999999999999999999996 4579999999999999999999
Q ss_pred EEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeec
Q 008996 421 YVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPG 500 (547)
Q Consensus 421 ~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~ 500 (547)
++|||++++++||.+|++++++|++++|+|+|+++|++||||||||+|+ ||+.+|+|||||||+|||++|++.++|++
T Consensus 510 ~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~-~G~~~~tpii~ppq~aIlgvG~i~~~p~~- 587 (633)
T PRK11854 510 VVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGG-LGTTHFTPIVNAPEVAILGVSKSAMEPVW- 587 (633)
T ss_pred EEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcc-cCCcceeccccCCceEEEEcccceEEEEE-
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999999987
Q ss_pred CCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 501 LGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 501 ~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
.++.+++|++|+||||||||+|||+++|+||++|+++||+|..|||
T Consensus 588 -~~~~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 588 -NGKEFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred -ECCEEEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 3678999999999999999999999999999999999999999886
No 12
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.3e-83 Score=682.29 Aligned_cols=377 Identities=30% Similarity=0.447 Sum_probs=305.4
Q ss_pred CCCCceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 114 GLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 114 ~~~~~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.+...++|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+ .|++|++|+++
T Consensus 40 ~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~-~V~~G~~L~~I 118 (418)
T PTZ00144 40 SYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGD-TVEVGAPLSEI 118 (418)
T ss_pred ccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCC-EecCCCEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999997 89999999998
Q ss_pred eccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCC
Q 008996 194 VEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLS 273 (547)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~ 273 (547)
.+.+++.. .+.. +.+ +++++. + .+.+...+.|... .....+..++|.+|+...
T Consensus 119 ~~~~~~~~-----~~~~------~~~--~~~~~~-~--~~~~~~~~~p~~~----~~a~~~~~a~p~vr~~~~------- 171 (418)
T PTZ00144 119 DTGGAPPA-----AAPA------AAA--AAKAEK-T--TPEKPKAAAPTPE----PPAASKPTPPAAAKPPEP------- 171 (418)
T ss_pred cCCCcccc-----cccc------ccC--CCCCcc-C--CCCCCCCCCCccc----cccccccCCchhhhcccc-------
Confidence 54332110 0000 000 000000 0 0000000000000 001113345666653100
Q ss_pred cccccCCCCccchhcHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhcccccCCCcEEEEEeecchHH
Q 008996 274 SIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDN 353 (547)
Q Consensus 274 ~V~GTGp~GrItk~DV~~~la~~~~~~~a~~~a~~~~~~~~~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~ 353 (547)
.. . ++..+. ...........+|+++|||+||++|..|++++||||+..++|+++
T Consensus 172 ---------------------~~-~--~~~~~~--~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~ 225 (418)
T PTZ00144 172 ---------------------AP-A--AKPPPT--PVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSA 225 (418)
T ss_pred ---------------------CC-C--CCCCCC--CccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechH
Confidence 00 0 000000 000001112347999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCCCeEEeEEccCCCCCH
Q 008996 354 LMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGL 433 (547)
Q Consensus 354 L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl 433 (547)
|+++|+++++....+.|.|+|+++||+||+++||++||.+|++|+++.+++++++||||||++++||+||||+|+|+|||
T Consensus 226 l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl 305 (418)
T PTZ00144 226 LMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSF 305 (418)
T ss_pred HHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCH
Confidence 99999999976555558899999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEE
Q 008996 434 STIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMS 513 (547)
Q Consensus 434 ~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ 513 (547)
.||++++++|++++|+|+|+++||+||||||||+|+ ||+.+|+|||||||+||||+|+++++|++ .+|++++|++|+
T Consensus 306 ~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~-~G~~~~tpIInpPq~aILgvG~i~~~pvv--~~g~i~~r~~m~ 382 (418)
T PTZ00144 306 AEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGV-FGSLMGTPIINPPQSAILGMHAIKKRPVV--VGNEIVIRPIMY 382 (418)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCC-CCcceeeeeecCCceEEEecccceeEeEE--ECCEEEEEeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999997 478999999999
Q ss_pred EEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 514 VTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 514 ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||||||||+|||++||+||++|+++||||+.||+
T Consensus 383 lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll 416 (418)
T PTZ00144 383 LALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLL 416 (418)
T ss_pred EEEecchhhhChHHHHHHHHHHHHHhcCHHHHhh
Confidence 9999999999999999999999999999998875
No 13
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=6.7e-82 Score=696.84 Aligned_cols=412 Identities=36% Similarity=0.538 Sum_probs=335.1
Q ss_pred ceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 118 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..+|+||+||+ |+||+|.+|+|++||.|++||.|++|||||+.++|+||++|+|.++++++|+ .|++|++|+++.+.+
T Consensus 119 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLVVIEVAA 196 (547)
T ss_pred ceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence 36999999999 9999999999999999999999999999999999999999999999999997 999999999986543
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCcc-ccChhhhhhhhhcCCCCCccc
Q 008996 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIK 276 (547)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~aSP~aR~lA~e~gIDL~~V~ 276 (547)
++..... .+. .. .+... ..+.+. . .+...+.+............+. ++||+||+||+||||||++|+
T Consensus 197 ~~~~~~~--~~~---~~-~~~~~-~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~ 264 (547)
T PRK11855 197 AAPAAAA--APA---AA-APAAA-AAAAPA---P--APAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVK 264 (547)
T ss_pred Ccccccc--CCC---CC-CCccc-cccCCC---C--CCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCc
Confidence 2210000 000 00 00000 000000 0 0000000000000001111233 799999999999999999999
Q ss_pred ccCCCCccchhcHHHHHHhcCCC--CCCC-CCCC---CC--CCCCC------CCccccccchhhhhhhhhcccccCCCcE
Q 008996 277 GTGPNGLIVKADIEDYLASRGKE--VPAK-APKG---KD--VAAPA------LDYVDIPHSQIRKITASRLLFSKQTIPH 342 (547)
Q Consensus 277 GTGp~GrItk~DV~~~la~~~~~--~~a~-~~a~---~~--~~~~~------~~~~~~p~s~iRk~iA~~m~~S~~~iP~ 342 (547)
|||++|||+++||++|++..... .+.. +.+. .. ...+. .....+|+++|||.|+++|..|++++||
T Consensus 265 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~ 344 (547)
T PRK11855 265 GTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPH 344 (547)
T ss_pred CCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCe
Confidence 99999999999999998642111 0100 0000 00 00110 0134578999999999999999999999
Q ss_pred EEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceec--cCcceecCcccEEEEeecCCCe
Q 008996 343 YYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENGL 420 (547)
Q Consensus 343 ~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~--~~~i~~~~~vnIgvAV~~~~GL 420 (547)
||++.++|+++|+++|+++++..+. .|.++|+++||+||+++||.+||+||++|+ ++.+++++++|||+||++++||
T Consensus 345 ~~~~~evd~t~l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl 423 (547)
T PRK11855 345 VTQFDEADITDLEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGL 423 (547)
T ss_pred EEEEEEEEChHHHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCcc
Confidence 9999999999999999999875543 388999999999999999999999999998 4578899999999999999999
Q ss_pred EEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeec
Q 008996 421 YVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPG 500 (547)
Q Consensus 421 ~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~ 500 (547)
++|||+|++++|+.+|+++++++++++|+|+|.++|+.||||||||+|+ ||..+|+|||||||+|||++|++.++|++
T Consensus 424 ~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~-~g~~~~tpii~~pq~ail~~G~~~~~pv~- 501 (547)
T PRK11855 424 VVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGG-IGGTAFTPIINAPEVAILGVGKSQMKPVW- 501 (547)
T ss_pred EeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCcc-ccccceecCcCCCceEEEEcccceEeeee-
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999999975
Q ss_pred CCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 501 LGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 501 ~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
.+|.+.+|++|+|||+||||+|||+++++||+.|+++||+|+.|||
T Consensus 502 -~~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 502 -DGKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred -eCCEEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 4688999999999999999999999999999999999999999886
No 14
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.2e-80 Score=666.10 Aligned_cols=406 Identities=45% Similarity=0.659 Sum_probs=334.9
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
.+++||++|++|+||+|.+|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+ .|++|++|+.+.+.++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~-~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD-VVPVGSVIAVIEEEGE 81 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC-EeCCCCEEEEEecCCC
Confidence 479999999999999999999999999999999999999999999999999999999999997 8999999999865543
Q ss_pred -CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCCcccc
Q 008996 199 -DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (547)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~G 277 (547)
+...+ +++... .+... +++.. .+.....+..........+.++.+||+||+||+||||||++|+|
T Consensus 82 ~~~~~~----~~~~~~--~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~g 147 (411)
T PRK11856 82 AEAAAA----AEAAPE--APAPE-PAPAA-------AAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKG 147 (411)
T ss_pred Cccccc----cCCCCC--CCCCC-CCCCC-------CCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcC
Confidence 21111 000000 00000 00000 00000000000000011122446899999999999999999999
Q ss_pred cCCCCccchhcHHHHHHhcCCCCC-CCCCCCCCCCCCCCCccccccchhhhhhhhhcccccCCCcEEEEEeecchHHHHH
Q 008996 278 TGPNGLIVKADIEDYLASRGKEVP-AKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMG 356 (547)
Q Consensus 278 TGp~GrItk~DV~~~la~~~~~~~-a~~~a~~~~~~~~~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~ 356 (547)
||++|||+++||++|+++...... ...+....+.......+.+|++++||.++++|..|++++||||++.++|+++|++
T Consensus 148 sG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~ 227 (411)
T PRK11856 148 SGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLA 227 (411)
T ss_pred CCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHH
Confidence 999999999999999864321100 0000000000011134568999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCCCeEEeEEccCCCCCHHHH
Q 008996 357 LRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTI 436 (547)
Q Consensus 357 lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eI 436 (547)
+|+++++. +.++|+++|++||+++||.+||++|++|.++.+++|+++|||+||++++||++|||++++++++.+|
T Consensus 228 ~~k~~~~~-----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei 302 (411)
T PRK11856 228 LRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFEL 302 (411)
T ss_pred HHHHHHhh-----ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHH
Confidence 99998642 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEEE
Q 008996 437 AEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTL 516 (547)
Q Consensus 437 a~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltl 516 (547)
+++++++++++|+|+|+++|+.||||||||+|+ +|..+|+|||||||+|||++|++.++|++. +|+++++.+|+|||
T Consensus 303 ~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~-~g~~~~~Pii~~p~~ail~iG~~~~~~~~~--~g~~~~~~~m~lsl 379 (411)
T PRK11856 303 AREIKDLAEKAREGKLKPEELQGGTFTISNLGM-FGGDYFTPIINPPEVAILGVGAIVERPVVV--DGEIVVRKVMPLSL 379 (411)
T ss_pred HHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCc-cCCCceECccCCCceEEEEcccceEEEEEE--CCEEEEEEEEEEeE
Confidence 999999999999999999999999999999999 999999999999999999999999999873 78999999999999
Q ss_pred eecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 517 SCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 517 t~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
+||||+|||+++++||+.|+++||||+.|||
T Consensus 380 t~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 410 (411)
T PRK11856 380 SFDHRVIDGADAARFLKALKELLENPALLLL 410 (411)
T ss_pred EeehhhcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence 9999999999999999999999999999885
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.5e-78 Score=607.38 Aligned_cols=398 Identities=31% Similarity=0.463 Sum_probs=335.7
Q ss_pred CCceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
...+.+++-++|+++.|+++.+|+|||||+|++.|.||||++||++++|+|.++|+|++|+...++ ...||++|..+.-
T Consensus 62 ~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd-ia~VGk~Lvd~ev 140 (474)
T KOG0558|consen 62 SGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD-IAKVGKPLVDLEV 140 (474)
T ss_pred cceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh-hhHhCcceeeeee
Confidence 346899999999999999999999999999999999999999999999999999999999999997 9999999987643
Q ss_pred cCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCCcc
Q 008996 196 EEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSI 275 (547)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V 275 (547)
++. .+. +..+.. .|+. +...+ .+...+.....++|++|+||+||||||+.|
T Consensus 141 e~~-~ds-----~e~s~e--s~~v------------------s~~~~---~~~~~~~~~tlaTPaVRrlA~e~~idla~v 191 (474)
T KOG0558|consen 141 EDS-QDS-----PEDSDE--SPAV------------------SLGES---KQGEESLLKTLATPAVRRLAKENGIDLAEV 191 (474)
T ss_pred ccC-cCC-----cccCCc--cccc------------------cCCCC---chhhhhccccccCHHHHHHHHHhCCceEee
Confidence 221 110 000000 0000 00000 011122335679999999999999999999
Q ss_pred cccCCCCccchhcHHHHHHhcCCCC--CCC-----CCCCCC--CCCCC-CCccccccchhhhhhhhhcccccCCCcEEEE
Q 008996 276 KGTGPNGLIVKADIEDYLASRGKEV--PAK-----APKGKD--VAAPA-LDYVDIPHSQIRKITASRLLFSKQTIPHYYL 345 (547)
Q Consensus 276 ~GTGp~GrItk~DV~~~la~~~~~~--~a~-----~~a~~~--~~~~~-~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l 345 (547)
+|||.+|||+|+||++|+.+..... +.+ .+.+.+ .+.+. .....+|+.+.+|+|.+.|+++ ..||||.+
T Consensus 192 ~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y 270 (474)
T KOG0558|consen 192 TGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGY 270 (474)
T ss_pred eccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCcccc
Confidence 9999999999999999998652211 110 111100 11111 1234579999999999999987 78999999
Q ss_pred EeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccC--cceecCcccEEEEeecCCCeEEe
Q 008996 346 TVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVP 423 (547)
Q Consensus 346 ~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~--~i~~~~~vnIgvAV~~~~GL~vP 423 (547)
..+||+|.|+++|++++....+ .|+|+|+++|++||+++||.++|.+|++++.+ .|+...++|||+|++|++||+||
T Consensus 271 ~dEIn~~sLvklr~elk~~a~e-~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVP 349 (474)
T KOG0558|consen 271 VDEINCDSLVKLRQELKENAKE-RGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVP 349 (474)
T ss_pred ccccChHHHHHHHHHHhhhhhh-cCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceecc
Confidence 9999999999999999865443 58999999999999999999999999999864 68889999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCC
Q 008996 424 VIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGP 503 (547)
Q Consensus 424 VI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~ 503 (547)
.|+|++.+|+.||++++++|.+..+.|+|+++|+.|||||+||+|. +|.++..|+|+|||+||.++|+|++-|-.. ..
T Consensus 350 NiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~-IGGtf~~P~i~~PeVAIgAlGrie~vPrFn-kk 427 (474)
T KOG0558|consen 350 NIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGA-IGGTFASPVIMPPEVAIGALGRIEKVPRFN-KK 427 (474)
T ss_pred CccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeeccc-ccccccCcccccchhhhhhccccccccccC-CC
Confidence 9999999999999999999999999999999999999999999998 999999999999999999999999887764 46
Q ss_pred CceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 504 DQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 504 g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
|++....+|.++|+.|||||||+..|+|-+.||+|||||+.|||
T Consensus 428 ~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll 471 (474)
T KOG0558|consen 428 GEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLL 471 (474)
T ss_pred CCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhh
Confidence 88999999999999999999999999999999999999999986
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.2e-76 Score=596.49 Aligned_cols=384 Identities=32% Similarity=0.457 Sum_probs=304.5
Q ss_pred ceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 118 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.+++.+|-++++++||+|.+|++++||.|+++|.||+|||||++++|.||.+|+|.++++++|+ +|.+|+.|+.|....
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gd-tV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGD-TVTPGQKLAKISPGA 150 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCC-cccCCceeEEecCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999998 899999999985432
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccccChhhhhhhhhcCCCCCcccc
Q 008996 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (547)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aR~lA~e~gIDL~~V~G 277 (547)
...+. +...|+..++.++|+..+ .|.+.+ ..+..+..|...+++++.+.....++ +...-+.+-+++
T Consensus 151 Apa~~-~~~apa~~~pk~~~a~~a-~p~~~s----~~~p~~~apv~e~p~~p~~~~P~~~~-a~k~~v~~~~~~------ 217 (457)
T KOG0559|consen 151 APAKG-GASAPAKAEPKTAPAAAA-PPKPSS----KPPPKEAAPVAESPPAPSSPEPVPAS-AKKPSVAQPKPP------ 217 (457)
T ss_pred CCccc-cccCCCccCCCCCCCCCC-CCCccC----CCCccccCCCCCCCCCCCCCCCCCcc-ccCccccCCCCC------
Confidence 21111 011111110000011000 000000 00000001111010111111000000 000000000000
Q ss_pred cCCCCccchhcHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccccchhhhhhhhhcccccCCCcEEEEEeecchHHHHHH
Q 008996 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (547)
Q Consensus 278 TGp~GrItk~DV~~~la~~~~~~~a~~~a~~~~~~~~~~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~l 357 (547)
+.....+..+...++|++||+.||.||.+|.++....+.+.++||++|+++
T Consensus 218 -----------------------------p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~m 268 (457)
T KOG0559|consen 218 -----------------------------PSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEM 268 (457)
T ss_pred -----------------------------cccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 001111223455789999999999999999888888888999999999999
Q ss_pred HHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCCCeEEeEEccCCCCCHHHHH
Q 008996 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIA 437 (547)
Q Consensus 358 r~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa 437 (547)
|+++++.+-+++|+|+.++.+|+||++.||++.|-+|+.++++.|+|++++||+|||.|+.||+||||||++.|++.||.
T Consensus 269 Rk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE 348 (457)
T KOG0559|consen 269 RKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIE 348 (457)
T ss_pred HHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHH
Confidence 99999888788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEEEe
Q 008996 438 EEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLS 517 (547)
Q Consensus 438 ~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt 517 (547)
.+|..|..|||+|+|+-+||.||||||||-|. ||..+.||||||||+||||+++|.+||++ .+|++++|+||++.||
T Consensus 349 ~~i~~L~~KAr~g~laiedM~gGTFTISNGGV-fGSL~gTPIINpPQsAILGmHgI~eRPv~--v~G~Vv~RPMMYvALT 425 (457)
T KOG0559|consen 349 KTIAGLGKKARDGKLAIEDMAGGTFTISNGGV-FGSLYGTPIINPPQSAILGMHGIKERPVV--VGGQVVPRPMMYVALT 425 (457)
T ss_pred HHHHHHHHhhccCceeeeeccCceEEEeCCcE-eeeeccCcccCCchhhhhhccccccccee--eCCEeeeccceEEEee
Confidence 99999999999999999999999999999776 99999999999999999999999999998 5899999999999999
Q ss_pred ecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 518 CDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 518 ~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||||+|||.+|.-||+.+|+++|||..|||
T Consensus 426 YDHRliDGREAVtFLr~iK~~VEDP~~mll 455 (457)
T KOG0559|consen 426 YDHRLIDGREAVTFLRKIKEAVEDPRKMLL 455 (457)
T ss_pred ccccccccHHHHHHHHHHHHHhhCHHHHhh
Confidence 999999999999999999999999999986
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=7.9e-76 Score=612.88 Aligned_cols=293 Identities=33% Similarity=0.504 Sum_probs=260.4
Q ss_pred CCccccChhhhhhhhhcCCCCCcccccCCCCccchhcHHHHHHhcCCCC-CC-CCCCCCCCCCC-----CCCccccccch
Q 008996 252 EDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEV-PA-KAPKGKDVAAP-----ALDYVDIPHSQ 324 (547)
Q Consensus 252 ~~~v~aSP~aR~lA~e~gIDL~~V~GTGp~GrItk~DV~~~la~~~~~~-~a-~~~a~~~~~~~-----~~~~~~~p~s~ 324 (547)
..++++||+||+||+|+||||++|+|||++|||+++||++|+....... .+ +....+....+ ....+.+|+++
T Consensus 46 ~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 125 (347)
T PRK14843 46 TNVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTP 125 (347)
T ss_pred cccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcH
Confidence 3467799999999999999999999999999999999999985421111 01 00000000000 11134579999
Q ss_pred hhhhhhhhcccccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceecc--Ccc
Q 008996 325 IRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYI 402 (547)
Q Consensus 325 iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~--~~i 402 (547)
|||.||++|.+|++++||||+..++|+++|+++|+++++.+....|.|+|+++||+||++.||++||.+|++|++ +.+
T Consensus 126 ~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i 205 (347)
T PRK14843 126 MRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTI 205 (347)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeE
Confidence 999999999999999999999999999999999999987555455889999999999999999999999999984 468
Q ss_pred eecCcccEEEEeecCCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEeeCC
Q 008996 403 RQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINP 482 (547)
Q Consensus 403 ~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpiinp 482 (547)
+++++|||||||++++||+||||||+|+|||.||++++++|++++|+|+|+++||+||||||||+|+ ||+.+|+|||||
T Consensus 206 ~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~-~G~~~~tpIInp 284 (347)
T PRK14843 206 ITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGM-FGVQSFGPIINQ 284 (347)
T ss_pred EEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCC-CcccceeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CceEEEEeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 483 PQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 483 Pq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||+||||+|+++++|++ .+|++++|++|+||||||||+|||++||+||++|+++||+|+.||+
T Consensus 285 Pq~aIlgvG~i~~~pv~--~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 285 PNSAILGVSSTIEKPVV--VNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred CceEEEecCCcceeeEE--ECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 99999999999999987 4789999999999999999999999999999999999999999875
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=4.1e-75 Score=598.21 Aligned_cols=290 Identities=29% Similarity=0.467 Sum_probs=258.2
Q ss_pred cccChhhhhhhhhcCCCCCcccccCCCCccchhcHHHHHHhcCC-CCCCC---CCC--CCC----C-C-CCCCCcccccc
Q 008996 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGK-EVPAK---APK--GKD----V-A-APALDYVDIPH 322 (547)
Q Consensus 255 v~aSP~aR~lA~e~gIDL~~V~GTGp~GrItk~DV~~~la~~~~-~~~a~---~~a--~~~----~-~-~~~~~~~~~p~ 322 (547)
+++||+||+||+|+||||++|+|||++|||+++||++|+.+... ..+.+ .+. ... + + .+......+|+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV 81 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence 46899999999999999999999999999999999999854211 01100 000 000 0 0 01111345799
Q ss_pred chhhhhhhhhcccccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceecc--C
Q 008996 323 SQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--E 400 (547)
Q Consensus 323 s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~--~ 400 (547)
++||+.|+++|.+|++++||+|+..++|+++|+++|+++++.+..+.|.|+|+++||+||+++||++||.+|++|++ +
T Consensus 82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 161 (306)
T PRK11857 82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161 (306)
T ss_pred cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCC
Confidence 99999999999999999999999999999999999999997655556899999999999999999999999999984 4
Q ss_pred cceecCcccEEEEeecCCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcccEEEee
Q 008996 401 YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAII 480 (547)
Q Consensus 401 ~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~~tpii 480 (547)
.++++++|||||||++++||+||||+|+|+|||.||++++++|++++|+|+|+++||+||||||||+|+ +|+.+|+|||
T Consensus 162 ~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~-~G~~~~tpiI 240 (306)
T PRK11857 162 ELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGS-VGSLYGVPVI 240 (306)
T ss_pred EEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCC-CCccceeccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCceEEEEeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 481 NPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 481 npPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
||||+||||+|+++++|++ .+|++++|++|+||||||||+|||++||+||++|+++||+|+.|++
T Consensus 241 n~pq~aILgvG~i~~~pvv--~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 241 NYPELAIAGVGAIIDKAIV--KNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred CCCccceeecccceEEeEE--ECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 9999999999999999998 4789999999999999999999999999999999999999998753
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=6.2e-63 Score=490.77 Aligned_cols=228 Identities=47% Similarity=0.764 Sum_probs=203.5
Q ss_pred CccccccchhhhhhhhhcccccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCc
Q 008996 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (547)
Q Consensus 316 ~~~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~ 395 (547)
+++++|++++||++|++|.+|++++||+|+..++|+++|+++|+++++..... +.++|+++|++||+++||++||.+|+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~-~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEP-GGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHT-TST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhh-ccCCChhHeeeehHhhhhHHHHHhcc
Confidence 45678999999999999999999999999999999999999999999765543 55999999999999999999999999
Q ss_pred eeccCc-ceecCcccEEEEeecCCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCCCcCCcc
Q 008996 396 SWADEY-IRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIK 474 (547)
Q Consensus 396 ~~~~~~-i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~ 474 (547)
+|+++. +++++++||||||++++||++|||+|++++|+.||+++++++++++|+|+|+++||+||||||||+|+ ||+.
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~-~g~~ 160 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGM-FGVE 160 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGG-TT-S
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCC-CCcc
Confidence 999887 99999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cEEEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccccC
Q 008996 475 QFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 547 (547)
Q Consensus 475 ~~tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~lll 547 (547)
+|+|||||||+|||++|+++++|++ .+|+++++++|++|||||||++||++||+||++|+++||||+.|||
T Consensus 161 ~~~pii~~pq~ail~vG~i~~~p~~--~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 161 SFTPIINPPQVAILGVGAIRDRPVV--EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp CEE----TTSSEEEEEEEEEEEEEE--ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eeEccCCcccceEEEecceEEEEEE--EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 9999999999999999999999998 5899999999999999999999999999999999999999999987
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1.2e-50 Score=450.04 Aligned_cols=222 Identities=23% Similarity=0.327 Sum_probs=209.4
Q ss_pred cccccchhhhhhhhhcccccCCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCcee
Q 008996 318 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSW 397 (547)
Q Consensus 318 ~~~p~s~iRk~iA~~m~~S~~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~ 397 (547)
...|+++++++++++|..| ..+|+++...+|+++.|+++|..+|+++....|.|+|+||||+||+++||++||.+|++|
T Consensus 116 ~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy 194 (1228)
T PRK12270 116 EVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY 194 (1228)
T ss_pred ceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence 4578999999999999999 569999999999999999999999998887889999999999999999999999999999
Q ss_pred c--cCc--ceecCcccEEEEeecC-----CCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEeCC
Q 008996 398 A--DEY--IRQFKNVNINVAVQTE-----NGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLG 468 (547)
Q Consensus 398 ~--~~~--i~~~~~vnIgvAV~~~-----~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L~~~d~~ggTfTISNlG 468 (547)
. +++ +++.++|||||||+++ +||+||||++||+|++.+|.+++.+|+.|||+|+|+++||+||||||||+|
T Consensus 195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G 274 (1228)
T PRK12270 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG 274 (1228)
T ss_pred eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence 8 443 8999999999999998 589999999999999999999999999999999999999999999999999
Q ss_pred CcCCcccEEEeeCCCceEEEEeccceeeeeecC----CCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcC
Q 008996 469 GPFGIKQFCAIINPPQSGILAVGSAEKRVVPGL----GPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 541 (547)
Q Consensus 469 ~~~G~~~~tpiinpPq~aIL~vG~i~~r~v~~~----~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~ 541 (547)
| ||+.+|+|||||||+||||+|++..++++.. ..+++.++++|+||+|||||||||+++++||++|+++||-
T Consensus 275 ~-iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLeG 350 (1228)
T PRK12270 275 G-IGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLLG 350 (1228)
T ss_pred c-ccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHhc
Confidence 9 9999999999999999999999998887631 2468999999999999999999999999999999999983
No 21
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.73 E-value=7.3e-18 Score=139.01 Aligned_cols=74 Identities=42% Similarity=0.721 Sum_probs=71.6
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
++|++|.+|..+++++|.+|++++||.|++||+||+|||||+.++|+||.+|+|.++++++|+ .|.+|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~-~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGD-TVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTE-EEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999997 99999999975
No 22
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.73 E-value=1.8e-17 Score=173.00 Aligned_cols=76 Identities=39% Similarity=0.646 Sum_probs=73.5
Q ss_pred ceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 118 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.++++||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|++|++|+.+.
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~g~~l~~i~ 77 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPVGALLAVVA 77 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCCCCEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999997 999999999984
No 23
>PRK06748 hypothetical protein; Validated
Probab=99.63 E-value=1.3e-15 Score=127.94 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=59.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEe-CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEt-dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.|+|.+|+|++||.|++||+|++||| ||++++|+||.+|+|.++++++|+ .|++|++|+++.
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd-~V~vG~~la~I~ 74 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITVR 74 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC-EECCCCEEEEEE
Confidence 48999999999999999999999999 999999999999999999999998 899999999983
No 24
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.61 E-value=6.4e-15 Score=160.15 Aligned_cols=83 Identities=54% Similarity=0.870 Sum_probs=76.7
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
++|+||++|++|+||+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|++.|++|++|+++.++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999537999999999866554
Q ss_pred Ccc
Q 008996 199 DIP 201 (547)
Q Consensus 199 ~~~ 201 (547)
+..
T Consensus 83 ~~~ 85 (464)
T PRK11892 83 SAS 85 (464)
T ss_pred ccc
Confidence 443
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.48 E-value=1.9e-13 Score=111.67 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=59.1
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|+|.+|++++||.|++||+|++||+||++++|.||.+|+|.++++++|+ .|+.|++|+++
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~-~V~~G~~l~~i 70 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGD-VIQAGDLIAVI 70 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 49999999999999999999999999999999999999999999999997 89999999986
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.46 E-value=3.8e-13 Score=109.91 Aligned_cols=72 Identities=33% Similarity=0.625 Sum_probs=68.9
Q ss_pred EecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 121 i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
+.+|+++.++.+|++.+|++++||.|++||+|+++|++|+.++|.||.+|+|.++.++.|+ .+..|+.|+.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~-~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGT-KVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999997 89999999863
No 27
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.44 E-value=6.6e-13 Score=148.75 Aligned_cols=78 Identities=36% Similarity=0.564 Sum_probs=74.2
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
++|.||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+ .|++|++|+++.+.+
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd-~v~vG~~ia~i~~~~ 80 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDD-TVDIGGEIAIIGEAG 80 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCC-EEeeeeeEEEEeecc
Confidence 579999999999999999999999999999999999999999999999999999999999997 899999999886533
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.42 E-value=6e-13 Score=150.39 Aligned_cols=75 Identities=31% Similarity=0.438 Sum_probs=71.8
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
.+|+||+|| |+||+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+ .|++|++|+.+.++
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEeCCCEEEEEecc
Confidence 479999999 9999999999999999999999999999999999999999999999999997 99999999998544
No 29
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.36 E-value=3.2e-12 Score=104.06 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=59.0
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
-|+|.+|++++||.|++||+|++||+||+.+++.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~-~V~~g~~l~~i 69 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGD-FVNEGDVLLEI 69 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCC-EECCCCEEEEE
Confidence 38999999999999999999999999999999999999999999999997 99999999986
No 30
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.35 E-value=4.2e-13 Score=96.93 Aligned_cols=38 Identities=53% Similarity=0.782 Sum_probs=34.3
Q ss_pred ccccChhhhhhhhhcCCCCCcccccCCCCccchhcHHH
Q 008996 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 291 (547)
Q Consensus 254 ~v~aSP~aR~lA~e~gIDL~~V~GTGp~GrItk~DV~~ 291 (547)
++++||+||+||+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 57899999999999999999999999999999999985
No 31
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.35 E-value=2.1e-12 Score=119.37 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=59.7
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.-|++.+.+|++||+|++||+||.||.||+.++|+||.+|+|.+|++++|+ .|..|++|+.|
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve~G~~L~~I 138 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAVI 138 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccCCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 99999999987
No 32
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.28 E-value=1.4e-11 Score=137.31 Aligned_cols=76 Identities=33% Similarity=0.521 Sum_probs=72.6
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
++|+||++|+ |.||+|.+|+|++||.|++||+||+|||||+.++|.||.+|+|.++++++|+ .|.+|++|+.+.+.
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd-~V~~G~~L~~i~~~ 78 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGD-TVSVGGLLAVIEAA 78 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCC-EecCCceeeEeccc
Confidence 4799999999 9999999999999999999999999999999999999999999999999997 89999999988543
No 33
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.25 E-value=2.5e-11 Score=110.49 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=59.4
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ-VVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 89999999876
No 34
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.22 E-value=3.4e-11 Score=134.03 Aligned_cols=74 Identities=35% Similarity=0.532 Sum_probs=70.8
Q ss_pred EEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 120 ~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
+|+||+||.. .+|+|++|+|++||.|++||+|++|||||+.++|.|+.+|+|.++++++|+ .|++|++|+++..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd-~V~~G~~La~i~~ 75 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGD-TLPVGGVIATLEV 75 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCC-EEeccceEEEEec
Confidence 6899999987 999999999999999999999999999999999999999999999999997 9999999998843
No 35
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.20 E-value=5.6e-11 Score=111.26 Aligned_cols=61 Identities=28% Similarity=0.430 Sum_probs=58.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGD-TVDTGQPLIEL 152 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCC-EECCCCEEEEe
Confidence 47999999999999999999999999999999999999999999999997 99999999976
No 36
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.19 E-value=2.1e-09 Score=105.60 Aligned_cols=177 Identities=15% Similarity=0.215 Sum_probs=126.2
Q ss_pred CCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccC-cceecCcccEEEEeec
Q 008996 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE-YIRQFKNVNINVAVQT 416 (547)
Q Consensus 338 ~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~-~i~~~~~vnIgvAV~~ 416 (547)
..-|.+.++.++|+|+|.+..++ .++++...++.++.+|+-++|+++-++.++ .+.+++.++.+.+|-.
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~----------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKE----------KGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH 92 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHH----------TT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHH----------cCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence 35689999999999999776443 147899999999999999999999999987 9999999999999975
Q ss_pred -CCCeEEeEEccCCCCCHHHHHHHHHHHHHHHhcC-CCCCCC-CCCCcEEEEeCCCcCCcccE-EEeeCCCc--eEEEEe
Q 008996 417 -ENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQD-YEGGTFTVTNLGGPFGIKQF-CAIINPPQ--SGILAV 490 (547)
Q Consensus 417 -~~GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g-~L~~~d-~~ggTfTISNlG~~~G~~~~-tpiinpPq--~aIL~v 490 (547)
+++++.-+.-.-+ .++.++.+...+.++++++. .+.++. .....|.+|++=- +.-+.+ .++-+.+. .-++..
T Consensus 93 ~~~~tFs~~~~~y~-~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW-~~FTs~~~~~~~~~~~~~P~it~ 170 (206)
T PF00302_consen 93 KDDETFSFCWTEYD-EDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPW-VSFTSFSHPVPNGKDDSIPRITW 170 (206)
T ss_dssp TTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETT-S--SEEEEEESSTTT-SS-EEEE
T ss_pred CCCCeEEEEEecCC-CCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccc-eecccccccccCCCcccccEEEe
Confidence 5576654433333 48999999999999988764 455443 3445789999833 233333 33333332 357999
Q ss_pred ccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHH
Q 008996 491 GSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFK 536 (547)
Q Consensus 491 G~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk 536 (547)
|+..++ +| |-+|||++.+-|.++||.++++|++.|.
T Consensus 171 GK~~~~------~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 171 GKYFEE------NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp E--EEE------TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred eeeEeE------CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 998764 45 3479999999999999999999999874
No 37
>PRK07051 hypothetical protein; Validated
Probab=99.19 E-value=9.9e-11 Score=98.02 Aligned_cols=68 Identities=29% Similarity=0.419 Sum_probs=61.6
Q ss_pred eEEecCCCCCCCCeeEEEE-------EEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEE
Q 008996 119 QEIGMPSLSPTMQEGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIA 191 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~-------w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~ 191 (547)
.++..|.. |++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+
T Consensus 4 ~~~~ap~~------g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~-~V~~G~~l~ 76 (80)
T PRK07051 4 HEIVSPLP------GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGE-PVEAGQVLA 76 (80)
T ss_pred cEEeCCCc------eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcC-EECCCCEEE
Confidence 35556643 56777 99999999999999999999999999999999999999999997 899999999
Q ss_pred EE
Q 008996 192 IT 193 (547)
Q Consensus 192 ~i 193 (547)
++
T Consensus 77 ~i 78 (80)
T PRK07051 77 RI 78 (80)
T ss_pred EE
Confidence 87
No 38
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.18 E-value=1.3e-10 Score=92.38 Aligned_cols=62 Identities=27% Similarity=0.498 Sum_probs=58.9
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.+|+|.+|++++||.|++||+|+++|++|...+|+||.+|+|.++.+++|+ .|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD-QVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 469999999999999999999999999999999999999999999999997 89999999864
No 39
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.14 E-value=1.2e-10 Score=116.30 Aligned_cols=61 Identities=31% Similarity=0.502 Sum_probs=58.4
Q ss_pred eeEEEE-------EEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~-------w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.+|++++|+ .|.+|++|+.|
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~vGqpL~~I 272 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVSVDTPLFVI 272 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 478888 99999999999999999999999999999999999999999997 89999999987
No 40
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.13 E-value=3.6e-09 Score=104.77 Aligned_cols=178 Identities=15% Similarity=0.215 Sum_probs=134.0
Q ss_pred cEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCC-C
Q 008996 341 PHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTEN-G 419 (547)
Q Consensus 341 P~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~-G 419 (547)
|++.++.++|+|+|.+..++ .++++...++.|+.+|+-++|+++-++.++.+..++.++.+..|-.++ +
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~----------~~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~ 100 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 100 (219)
T ss_pred CceEEEEEEEHHHHHHHHHH----------cCCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCc
Confidence 45999999999999765432 247889999999999999999999999999999999999999998554 5
Q ss_pred eEEeEEccCCCCCHHHHHHHHHHHHHHHhcC-CCCCCCCCCCcEEEEeCCCcCCc-ccE-EEeeCCCc--eEEEEeccce
Q 008996 420 LYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQDYEGGTFTVTNLGGPFGI-KQF-CAIINPPQ--SGILAVGSAE 494 (547)
Q Consensus 420 L~vPVI~~ad~~sl~eIa~~i~~l~~kar~g-~L~~~d~~ggTfTISNlG~~~G~-~~~-tpiinpPq--~aIL~vG~i~ 494 (547)
++.-+.-.-+ -++.++.+...+.++++.+. .+-+.....-.|.||.+ ||=. +.+ .++-+... .-++..|+..
T Consensus 101 tFs~~~~~y~-~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~i--PW~sFTs~~~~~~~~~~~~~P~it~GKy~ 177 (219)
T PRK13757 101 TFSSLWSEYH-DDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSAN--PWVSFTSFDLNVANMDNFFAPVFTMGKYY 177 (219)
T ss_pred eEEEEEecCc-CCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecc--cCcCccccccccccCCCCcCcEEEeeceE
Confidence 6654433333 37888888888888888875 45554445567888876 4321 111 22322222 2378889886
Q ss_pred eeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcC
Q 008996 495 KRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 541 (547)
Q Consensus 495 ~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~ 541 (547)
++ +| |-+|||++.+-|-++||.++++|++.|.++|.+
T Consensus 178 ~~------~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 178 TQ------GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred EE------CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 53 44 357999999999999999999999999999876
No 41
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.12 E-value=1.8e-10 Score=108.45 Aligned_cols=60 Identities=28% Similarity=0.491 Sum_probs=57.2
Q ss_pred eEEEE-------EEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 133 GNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 133 g~i~~-------w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.++++++|+ .|..|++|+.|
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~~Gq~L~~i 155 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVEYGQPLIVI 155 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EECCCCEEEEE
Confidence 67765 99999999999999999999999999999999999999999997 99999999976
No 42
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.10 E-value=9.5e-10 Score=86.96 Aligned_cols=73 Identities=56% Similarity=0.865 Sum_probs=69.7
Q ss_pred EEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 120 ~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
++.+|+++....+|+|.+|++.+|+.|..|++++.+|++|+..++.++.+|++.+....+|+ .+..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~-~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD-TVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcC-EeCCCCEEEEC
Confidence 57899999999999999999999999999999999999999999999999999999999997 89999999863
No 43
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.07 E-value=3.8e-10 Score=106.13 Aligned_cols=60 Identities=27% Similarity=0.495 Sum_probs=56.8
Q ss_pred eEEEE-------EEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 133 GNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 133 g~i~~-------w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
|++.. |+|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+ .|..|++|+.+
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~~Gq~L~~i 154 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVEFGQPLFVI 154 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeCCCCEEEEe
Confidence 56665 99999999999999999999999999999999999999999997 99999999876
No 44
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.01 E-value=9.1e-10 Score=123.03 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=59.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.|+|.+|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+ .|.+|++|+.|.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd-~V~~G~~L~~I~ 594 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGD-KVTPGQVLIRVE 594 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcC-EECCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999997 899999999873
No 45
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.92 E-value=2.5e-09 Score=128.48 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=59.6
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
..|+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+ .|.+|++|++|
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~-~V~~G~~l~~i 1200 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGD-MVDAGDIVAVL 1200 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCC-EeCCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 89999999986
No 46
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.86 E-value=3.6e-09 Score=118.44 Aligned_cols=59 Identities=31% Similarity=0.468 Sum_probs=56.3
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l 190 (547)
..|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+ .|.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd-~V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGD-AVSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCCC
Confidence 349999999999999999999999999999999999999999999999997 89999875
No 47
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.83 E-value=8.7e-09 Score=115.54 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=59.1
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++.+++|+ .|..|++|+.+
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGD-AVAVGDTLLTL 592 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 48999999999999999999999999999999999999999999999997 99999999986
No 48
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.80 E-value=1.1e-08 Score=121.98 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=59.1
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|++|
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i 1142 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE-QIDAKDLLLVL 1142 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 48999999999999999999999999999999999999999999999998 89999999986
No 49
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.66 E-value=5.7e-08 Score=109.19 Aligned_cols=61 Identities=26% Similarity=0.454 Sum_probs=59.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|+|.+|+|++||.|++||+|++||++|+..+|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 590 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGD-RVNPGDVLMEI 590 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 48999999999999999999999999999999999999999999999997 99999999987
No 50
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.53 E-value=1.9e-07 Score=111.95 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=59.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|+|.+|+|++||.|++||+|+++|+||+..+|.||.+|+|.++.+++|+ .|..|++|+.+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~-~V~~g~~l~~i 1144 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGD-QVEAGDLLVEL 1144 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 39999999999999999999999999999999999999999999999997 89999999987
No 51
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=98.48 E-value=9.4e-06 Score=78.37 Aligned_cols=183 Identities=13% Similarity=0.184 Sum_probs=129.4
Q ss_pred CCCcEEEEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecC
Q 008996 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTE 417 (547)
Q Consensus 338 ~~iP~~~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~ 417 (547)
...||+.+....|++.+-...++ .+++++..++.|+.+++.++++++=++.++.+.+++.++..+.|-.+
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~vk~----------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~ 95 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGYVKE----------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHG 95 (219)
T ss_pred cccceEeeeeeeehhHHHHHHHH----------cCCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcC
Confidence 45899999999998886444332 15799999999999999999999999999999999999999999985
Q ss_pred C-CeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCC-CCCCCCCC-cEEEEeCCCcCCcccEEEeeCCCc------eEEE
Q 008996 418 N-GLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSL-KPQDYEGG-TFTVTNLGGPFGIKQFCAIINPPQ------SGIL 488 (547)
Q Consensus 418 ~-GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L-~~~d~~gg-TfTISNlG~~~G~~~~tpiinpPq------~aIL 488 (547)
+ +++.-+--+ =+.+..++++....-+++.+++.- .++|-.-. -..+||+ -...||.+=.+=+ .-|+
T Consensus 96 ~~e~Fs~l~~e-~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~l----PWlsFtslS~~~~~~k~~~~PiF 170 (219)
T COG4845 96 ETETFSVLWTE-YQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNL----PWLSFTSLSHHYRRNKIYGQPIF 170 (219)
T ss_pred CCcEEEEEecc-ccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccc----cccceeeeeeeccCCccccceeE
Confidence 5 555544333 346888888877777777777632 22221111 1222332 1222322211100 0155
Q ss_pred EeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhcCcccc
Q 008996 489 AVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESM 545 (547)
Q Consensus 489 ~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~~l 545 (547)
..|+-.. .||.+ .||+++...|-.+||-+++.|++.|..++++|-.+
T Consensus 171 ~~Grf~~------~~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 171 YAGRFYE------EDGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred eecceec------cCCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 5665533 47766 48999999999999999999999999999999765
No 52
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.41 E-value=4.5e-07 Score=98.62 Aligned_cols=62 Identities=27% Similarity=0.460 Sum_probs=59.7
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
..|+|+...|++|++|.+||+|+.+|.||++..|.||.+|+|.++.+.+|+ .|.+|++|..+
T Consensus 582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd-~V~~g~vLve~ 643 (645)
T COG4770 582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGD-QVAVGTVLVEF 643 (645)
T ss_pred CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCC-ccccCceEEEe
Confidence 458999999999999999999999999999999999999999999999998 89999999887
No 53
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.24 E-value=1.5e-06 Score=97.31 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
|.|++..|++||.|++||+|+.+|.||++..|.||.+|+|.++++.+|+ .|..|+.|..+
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd-~i~~gDLLi~~ 1147 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD-QIDGGDLLVVV 1147 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCC-ccccCceEEEc
Confidence 8999999999999999999999999999999999999999999999998 89999999765
No 54
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.18 E-value=3e-06 Score=73.33 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=49.4
Q ss_pred eEEecCCCCCCCCeeEEEE-EEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCC
Q 008996 119 QEIGMPSLSPTMQEGNIAR-WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 181 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~-w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~ 181 (547)
..+.|=+.+..+- |+|.. |++++|+.|++||+|++||++|++.+|.||.+|+|.++..+.++
T Consensus 16 ~~lGlt~~~~~~l-G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 16 ATVGITDYAQDLL-GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred EEEeeCHHHHhhC-CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 3455555544442 55555 78888999999999999999999999999999999998766654
No 55
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.95 E-value=1.6e-05 Score=87.68 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=58.3
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|+|++..|++|++|++||+||.+..+|+++-|.||.+|+|.++.+..|+ .+..|+.+.++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~-~~~g~DL~~~~ 1174 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGT-KVEGGDLIVEL 1174 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCC-cccccceEEEc
Confidence 48999999999999999999999999999999999999999999999997 89999998876
No 56
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.84 E-value=2.5e-05 Score=69.47 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=36.1
Q ss_pred CCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCC
Q 008996 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (547)
Q Consensus 141 ~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G 180 (547)
++|+.|++||+|++||++|+..+|.||.+|+|.++.....
T Consensus 39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 6799999999999999999999999999999999854433
No 57
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.76 E-value=5.8e-05 Score=67.54 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=36.9
Q ss_pred EEEEEEc-CCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe
Q 008996 134 NIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (547)
Q Consensus 134 ~i~~w~v-~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~ 176 (547)
.|..... ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 33 ~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 33 NILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 3433333 669999999999999999999999999999999883
No 58
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.68 E-value=1.9e-05 Score=83.65 Aligned_cols=43 Identities=40% Similarity=0.726 Sum_probs=39.8
Q ss_pred CccccChhhhhhhhhcCCCCCcccccCCCCccchhcHHHHHHh
Q 008996 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (547)
Q Consensus 253 ~~v~aSP~aR~lA~e~gIDL~~V~GTGp~GrItk~DV~~~la~ 295 (547)
+++++||.+|++|+++|||++.|+|||++|||+++||++|...
T Consensus 4 ~~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 4 DKLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred ccccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 5667899999999999999999999999999999999999753
No 59
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.68 E-value=6.6e-05 Score=88.71 Aligned_cols=65 Identities=25% Similarity=0.484 Sum_probs=60.1
Q ss_pred CCCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 129 ~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
+-+.|++++|+|+.|+.|..||+-+|||.||+.|.+.|+.+|+|. ...++|+ .+..|++||.+.-
T Consensus 690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~-~i~aG~vlakL~l 754 (2196)
T KOG0368|consen 690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGD-AIEAGSVLAKLTL 754 (2196)
T ss_pred CCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCC-ccCccceeEEeec
Confidence 456799999999999999999999999999999999999999995 6689998 9999999998753
No 60
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.61 E-value=0.00012 Score=79.06 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
|.|.+.+|++||.|.+||.|+.+|.+|+..-+.||.+|++..+.++.|+ +|.-|.+|..+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~-~v~~g~vlv~~ 669 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGA-TVGDGAVLVEF 669 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCc-ccCCCceEEEe
Confidence 6899999999999999999999999999999999999999999999997 89999998765
No 61
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.59 E-value=0.00012 Score=68.12 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=47.0
Q ss_pred eEEecCCCCCCCCeeEEEEEEcC-CCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCC
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKK-EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~-~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~ 179 (547)
..|.|-+.+..+ =|.|..+.++ +|+.|++||+++.||++|+..+|.||.+|+|.++...-
T Consensus 31 ~~vGitd~aq~~-lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l 91 (144)
T PRK13380 31 VTVGITDYAQTM-AGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEAL 91 (144)
T ss_pred EEEecCHHHHHh-cCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhh
Confidence 344444444332 2567777776 89999999999999999999999999999999886543
No 62
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.49 E-value=0.00027 Score=73.74 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.7
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..|.||.+|+|..+.+.+|+ .|..|++|+.+.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQ-VVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCC-EeCCCCeeEEEEcCC
Confidence 47999999999999999997 999999999987654
No 63
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.44 E-value=0.00051 Score=74.41 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=57.8
Q ss_pred CeeEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------Cee
Q 008996 131 QEGNIARWL-KKEGDKVSPGEVLCEVETD------------------------------------------------KAT 161 (547)
Q Consensus 131 ~eg~i~~w~-v~~Gd~V~~gd~l~evEtd------------------------------------------------Ka~ 161 (547)
..|.|.+.+ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 349999998 9999999999999999831 113
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
..|.||++|+|.+..+.+|+ .|..|++|+.|.+.+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~-~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGMDP 245 (409)
T ss_pred EEEECCCCeEEEEEECCCCC-EECCCCeEEEEEcCCe
Confidence 57999999999999999997 9999999999976543
No 64
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.38 E-value=0.00039 Score=72.60 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=57.6
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCC---------------------------------------------------
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 159 (547)
..|.|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999998731
Q ss_pred -------------------eeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 160 -------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 160 -------------------a~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
-...|.||.+|+|.++.+++|+ .|..|++|+.+.+.+
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~-~V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGE-FITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCC-EecCCCeeEEEEeCC
Confidence 0246999999999999999997 999999999887643
No 65
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.37 E-value=0.00028 Score=72.67 Aligned_cols=66 Identities=24% Similarity=0.427 Sum_probs=57.1
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa-------------------------------------------------- 160 (547)
.+|.|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 358999999999999999999999976311
Q ss_pred ---------------------eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 161 ---------------------~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
...|.||.+|+|..+....|+ .|..|++|+.+.+.+
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGA-YVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCc-eeCCCCcEEEEEcCC
Confidence 246999999999999999997 999999999886543
No 66
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.30 E-value=0.00065 Score=62.00 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=41.8
Q ss_pred CCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEE---eeCCCCeeee---CCC-EEEEE
Q 008996 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI---VKGDGSKEIK---VGE-VIAIT 193 (547)
Q Consensus 141 ~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki---~~~~G~~~v~---vG~-~l~~i 193 (547)
++|+.|++||++++||++|+..+|.||.+|+|.++ +..+.+ .+. -|+ -|+.+
T Consensus 46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~-~ln~~p~~~gWl~~v 104 (127)
T PRK01202 46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPE-LVNEDPYGEGWLFKI 104 (127)
T ss_pred CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcH-hhcCCCCCCceEEEE
Confidence 67999999999999999999999999999999999 444443 333 333 56555
No 67
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.21 E-value=0.00072 Score=71.37 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=31.7
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..|.||++|+|.++.+.+|+ .|..|++|+.|++.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~-~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGE-FAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCC-CcCCCCeEEEEecCC
Confidence 46999999999999999997 999999999997654
No 68
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.20 E-value=0.00048 Score=62.87 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=35.1
Q ss_pred cCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEee
Q 008996 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (547)
Q Consensus 140 v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~ 177 (547)
.++|+.|++||+++.||++|+..+|.||.+|+|.++..
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~ 81 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVND 81 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehH
Confidence 36799999999999999999999999999999998753
No 69
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.04 E-value=0.0013 Score=70.90 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=31.8
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..|.||.+|+|..+.+++|+ .|..|++|+.+++..
T Consensus 216 t~I~AP~dG~V~~~~v~~G~-~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGA-QISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCC-EeCCCCeEEEEEeCC
Confidence 47999999999999999997 999999999987654
No 70
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.02 E-value=0.0012 Score=69.25 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=31.0
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
..|.||.+|+|..+.+.+|+ .|..|++|+.+.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~-~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGT-MLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCC-CcCCCCeEEEEecC
Confidence 57999999999999999997 99999999988654
No 71
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.94 E-value=0.0017 Score=69.58 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=54.8
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa-------------------------------------------------- 160 (547)
..|+|.++++++||.|++||+|+++++.-.
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 349999999999999999999999987310
Q ss_pred ---------------------eEEEecCcCeEEEEEeeCCCCeeeeCC--CEEEEEecc
Q 008996 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (547)
Q Consensus 161 ---------------------~~ev~ap~~G~l~ki~~~~G~~~v~vG--~~l~~i~~~ 196 (547)
...|.||++|+|.+..+++|+ .|..| ++|+.+.+.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~-~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGA-LVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCC-eecCCCCcceEEEEec
Confidence 137999999999999999997 89886 488877543
No 72
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.91 E-value=0.00095 Score=50.88 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=25.7
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdK 159 (547)
.|+|.+|+|++||.|++||+|++++++.
T Consensus 10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 5999999999999999999999998753
No 73
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.75 E-value=0.0034 Score=56.85 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=33.8
Q ss_pred EEEEEE-cCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe
Q 008996 134 NIARWL-KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (547)
Q Consensus 134 ~i~~w~-v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~ 176 (547)
.|+.+. .++|+.|++||+++.||+.|.+.++.||.+|+|.++.
T Consensus 32 ~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 32 DIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred ceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 343333 4569999999999999999999999999999999884
No 74
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.74 E-value=0.0035 Score=67.25 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=54.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC----------------------------------------------------
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDK---------------------------------------------------- 159 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdK---------------------------------------------------- 159 (547)
.|.|.+.++++||.|++||+|++|+..-
T Consensus 69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~ 148 (385)
T PRK09859 69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE 148 (385)
T ss_pred cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 4999999999999999999999998630
Q ss_pred -------------------eeEEEecCcCeEEEEEeeCCCCeeeeCCC--EEEEEeccC
Q 008996 160 -------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVEEE 197 (547)
Q Consensus 160 -------------------a~~ev~ap~~G~l~ki~~~~G~~~v~vG~--~l~~i~~~~ 197 (547)
....|.||++|+|.+..+..|+ .|..|+ +|+.+.+.+
T Consensus 149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~~ 206 (385)
T PRK09859 149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGA-LVTANQADSLVTVQRLD 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCC-eECCCCCcceEEEEecC
Confidence 1247999999999999999997 999985 677775543
No 75
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.64 E-value=0.0043 Score=66.91 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=54.3
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC----------------------------------------------------
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDK---------------------------------------------------- 159 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdK---------------------------------------------------- 159 (547)
.|.|.+.++++||.|++||+|++|+...
T Consensus 73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~ 152 (397)
T PRK15030 73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 152 (397)
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 4999999999999999999999997521
Q ss_pred -------------------eeEEEecCcCeEEEEEeeCCCCeeeeCCCE--EEEEeccC
Q 008996 160 -------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEV--IAITVEEE 197 (547)
Q Consensus 160 -------------------a~~ev~ap~~G~l~ki~~~~G~~~v~vG~~--l~~i~~~~ 197 (547)
-...|.||++|+|.+..++.|+ .|..|++ |+.+.+.+
T Consensus 153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~~ 210 (397)
T PRK15030 153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQLD 210 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCC-EECCCCCceEEEEEecC
Confidence 0135999999999999999997 9999985 66665433
No 76
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.62 E-value=0.0044 Score=47.19 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=30.8
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
++.|.+|.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~-~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQ-QVKKGDVLLVLDS 35 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCC-EEcCCCEEEEECc
Confidence 467999999999999999997 9999999999843
No 77
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.57 E-value=0.0053 Score=65.40 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=53.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC----------------------------------------------------
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDK---------------------------------------------------- 159 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdK---------------------------------------------------- 159 (547)
.|.|.+|++++||.|++||+|++++...
T Consensus 69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~ 148 (370)
T PRK11578 69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT 148 (370)
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4999999999999999999999998731
Q ss_pred ---------------------------------eeEEEecCcCeEEEEEeeCCCCeeeeCC---CEEEEEeccC
Q 008996 160 ---------------------------------ATVEMECMEEGYLAKIVKGDGSKEIKVG---EVIAITVEEE 197 (547)
Q Consensus 160 ---------------------------------a~~ev~ap~~G~l~ki~~~~G~~~v~vG---~~l~~i~~~~ 197 (547)
....|.||++|+|..+.+..|+ .|..| ++|+.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~-~V~~~~~~~~l~~i~~~~ 221 (370)
T PRK11578 149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADMS 221 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCc-EeecccCCceEEEEecCC
Confidence 0137999999999999999997 88766 4688775543
No 78
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.46 E-value=0.0055 Score=66.58 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=53.6
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCC---------------------------------------------------
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK--------------------------------------------------- 159 (547)
..|.|.++++++||.|++||+|++|....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999996531
Q ss_pred --------------------eeEEEecCcCeEEEEEeeCCCCeeeeCCC--EEEEEec
Q 008996 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVE 195 (547)
Q Consensus 160 --------------------a~~ev~ap~~G~l~ki~~~~G~~~v~vG~--~l~~i~~ 195 (547)
-...|.||++|+|..+.+..|+ .|..|+ +|+.+.+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~-~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGN-QISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCc-eecCCCCceeEEEec
Confidence 0237999999999999999997 899985 5776644
No 79
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.45 E-value=0.002 Score=66.56 Aligned_cols=26 Identities=42% Similarity=0.682 Sum_probs=20.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
.|.| +|+|++||.|++||+|++++++
T Consensus 29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 29 SGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp -EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred CEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 5999 9999999999999999999884
No 80
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0043 Score=56.57 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=34.9
Q ss_pred EcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe
Q 008996 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~ 176 (547)
+.++|+.|++||.++.||+-|+..+|.||.+|.|.++.
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 45789999999999999999999999999999998763
No 81
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.12 E-value=0.011 Score=61.58 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=27.9
Q ss_pred EEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 163 ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.|.||++|+|..+.+..|+ .|.. ++|+.+.+.+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~-~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGE-VIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCC-ccCC-CccEEEecCC
Confidence 6889999999999999997 8875 7888876543
No 82
>PRK12784 hypothetical protein; Provisional
Probab=96.03 E-value=0.039 Score=45.67 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=57.7
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEe-CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEt-dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
-.|+|.+.++.+++.|-+=++|+-|++ |+.-..|.--.+|.|.-+.+.+|+ .|..+..|+.+.+
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~dtlL~~~ed 76 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLED 76 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc-eecCCcEEEEEee
Confidence 468999999999999999999999999 566667888999999999999997 8999999998743
No 83
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=95.91 E-value=0.023 Score=57.56 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=47.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|.+ +..++-||.|++||+|+.|+. .+|.||.+|+|..+ .++|. .|..|--|+.|
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~-~V~~G~Ki~dI 226 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGL-TVTEGLKIGDV 226 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCC-CcCCCCEEEEE
Confidence 3544 559999999999999999974 79999999999877 48897 89999999987
No 84
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.24 E-value=0.06 Score=56.05 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=46.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe---CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 134 NIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l~evEt---dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
=+...+++.||.|++||+|++|=. +....+|.||.+|+|.-+. ..- .|..|+.|+.|
T Consensus 238 Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p-~v~~G~~l~~i 297 (298)
T cd06253 238 GIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYP-LVYEGSLVARI 297 (298)
T ss_pred eEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCC-eecCCceEEEe
Confidence 366788999999999999999954 4567789999999997654 444 79999999876
No 85
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=95.11 E-value=0.05 Score=54.63 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=31.5
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.+.|.||.+|+|..+....|+ .|..|++|+.+.+..
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGD-YVAPQAELFRVADLG 123 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCC-EeCCCCceEEEEcCC
Confidence 346899999999999999997 999999999886543
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.09 E-value=0.067 Score=57.31 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.3
Q ss_pred EEecCcCeEEEEEee-CCCCeeeeCCCEEEEEeccC
Q 008996 163 EMECMEEGYLAKIVK-GDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 163 ev~ap~~G~l~ki~~-~~G~~~v~vG~~l~~i~~~~ 197 (547)
.|.||++|+|..+.+ ..|+ .|..|++|+.+....
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~-~v~~g~~l~~i~~~~ 307 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGG-VVQPGETLMEIVPED 307 (423)
T ss_pred EEECCCCcEEEEEEEEccCc-eecCCCeeEEEecCC
Confidence 599999999998875 7997 999999999987543
No 87
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.03 E-value=0.031 Score=49.09 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=38.4
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeC
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~ 178 (547)
|.-.+-.|++||.|.+||.|++.+ +-....|-||.+|+|.+|.-.
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeee
Confidence 445578899999999999999997 466889999999999998543
No 88
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=95.03 E-value=0.048 Score=44.34 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=29.7
Q ss_pred EEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 163 ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
.|.||.+|+|.++++++|+ .|+.|++|+.+...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd-~V~~g~~l~~ve~~ 36 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGD-QIGKGDTLVLLESM 36 (71)
T ss_pred EEeCCCCEEEEEEEeCCCC-EECCCCEEEEEEec
Confidence 5899999999999999998 99999999987443
No 89
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.00 E-value=0.068 Score=57.14 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=46.3
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe----CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEt----dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
+=+..+.++.||.|++||+|++|-. +....+|.||.+|+|.-+. ..- .|..|+.|+.|
T Consensus 297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~-~V~~G~~l~~I 358 (359)
T cd06250 297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRR-FVRAGDELAKI 358 (359)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCc-cccCCCeEEEe
Confidence 3467899999999999999999954 3445557999999996554 443 79999999876
No 90
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.75 E-value=0.1 Score=54.03 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=44.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe--CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt--dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
+.++.++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..- .|..|+.|+.+
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~-~v~~G~~l~~i 286 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLP-LVNEGDALFHI 286 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCC-ccCCCCEEEEe
Confidence 55789999999999999999954 2334789999999997654 332 68999999875
No 91
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.75 E-value=0.039 Score=44.63 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.8
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evE 156 (547)
.+|+|.+|++++||.|..||+|++||
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 67999999999999999999999986
No 92
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=94.64 E-value=0.26 Score=51.97 Aligned_cols=37 Identities=32% Similarity=0.618 Sum_probs=30.5
Q ss_pred ceEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 118 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
.+.+.+|.- ..|+|.+++|++||+|+.|+.|+.|++.
T Consensus 113 K~tv~V~sP----~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 113 KTTVEVPSP----ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred ceeeeccCC----CcceeeEEecCCCCcccCCceeEEecCC
Confidence 345666643 3599999999999999999999999875
No 93
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.45 E-value=0.1 Score=54.97 Aligned_cols=56 Identities=32% Similarity=0.424 Sum_probs=45.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe----CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt----dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
+....++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..- .|..|+.|+.+
T Consensus 265 i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~-~V~~Gd~l~~i 324 (325)
T TIGR02994 265 LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPG-LIKSGDCIAVL 324 (325)
T ss_pred EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCC-ccCCCCEEEEe
Confidence 55788999999999999999954 2346789999999997654 333 69999999876
No 94
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.34 E-value=0.16 Score=53.37 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=46.0
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe----CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 134 NIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l~evEt----dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
=+....++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..- .|..|+.|+.+.
T Consensus 253 G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~-~v~~G~~l~~i~ 314 (316)
T cd06252 253 GLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPG-LVRRGDCLAVLA 314 (316)
T ss_pred eEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCC-ccCCCCEEEEEe
Confidence 366788999999999999999854 2456689999999997553 332 689999998764
No 95
>PRK06748 hypothetical protein; Validated
Probab=94.14 E-value=0.077 Score=44.96 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=26.8
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 159 (547)
..|+|.++++++||.|..|++|+.|+.|-
T Consensus 49 ~~G~v~~i~v~~Gd~V~vG~~la~I~~~~ 77 (83)
T PRK06748 49 ISGYIESLEVVEGQAIADQKLLITVRDDL 77 (83)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence 57999999999999999999999999764
No 96
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.79 E-value=0.18 Score=53.07 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=49.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEe---CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEt---dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
++=+++.+++.||.|++||+|+.|=. -+..+||.|+.+|+|..+... + .|+.|+.++++..
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~-~--~v~~Gdl~~~v~~ 326 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL-R--LVQPGDLLKVVGR 326 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec-c--ccCCCCeeeeecc
Confidence 34488999999999999999998865 488999999999999877533 3 5888888877643
No 97
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=93.04 E-value=0.15 Score=47.37 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.5
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
...|.||..|++.++++++|| .|+.||+||++...
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd-~V~~Gq~l~IiEAM 104 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGD-TVKAGQTLAIIEAM 104 (140)
T ss_pred CceEecCcceEEEEEeeccCC-EEcCCCEEEEEEee
Confidence 457999999999999999998 89999999998654
No 98
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=92.62 E-value=0.19 Score=39.24 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=28.0
Q ss_pred EecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 164 v~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
|.||.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 2 v~a~~~G~v~~~~v~~G~-~v~~g~~l~~i~ 31 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGD-KVEAGQPLAVLE 31 (67)
T ss_pred ccCCccEEEEEEEeCCCC-EECCCCEEEEEE
Confidence 689999999999999997 999999999874
No 99
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.41 E-value=0.29 Score=50.58 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=40.0
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe--CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEE
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEt--dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l 190 (547)
+=+...+++.||.|++||+|++|=. .....+|.||.+|+|.-+.. .- .|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~-~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TL-PVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CC-ccCCCCcc
Confidence 3466788899999999999998832 24456799999999975532 22 56777665
No 100
>PRK07051 hypothetical protein; Validated
Probab=92.10 E-value=0.2 Score=41.77 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=24.9
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEE
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evE 156 (547)
-.+|+|.+|++++||.|+.||+|++++
T Consensus 53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 53 EAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 357999999999999999999999986
No 101
>PF13437 HlyD_3: HlyD family secretion protein
Probab=92.08 E-value=0.23 Score=42.89 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=19.8
Q ss_pred EecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 164 v~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
|.||++|+|..+.++.|+ .|..|++|+.+.+.
T Consensus 2 i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGE-VVSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCCC-EECCCCEEEEEEcc
Confidence 556666666666666665 66666666665543
No 102
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=91.74 E-value=0.18 Score=51.32 Aligned_cols=50 Identities=36% Similarity=0.589 Sum_probs=37.9
Q ss_pred cCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCee--EEEecCcCeEEEEEeeCC
Q 008996 123 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKAT--VEMECMEEGYLAKIVKGD 179 (547)
Q Consensus 123 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~--~ev~ap~~G~l~ki~~~~ 179 (547)
+|+=-.+|. -+.+|+|||.|+.||+|++ ||-. +-+.||.+|+|.+|...+
T Consensus 32 ~~~Df~g~~----Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 32 LPDDFPGMK----PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred cCcccCCCC----ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence 444444444 4889999999999999994 5554 457899999999987533
No 103
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=91.15 E-value=6.9 Score=42.95 Aligned_cols=177 Identities=20% Similarity=0.260 Sum_probs=88.7
Q ss_pred EEEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhC--CCC--Cc-eec-----cCcceecC------c
Q 008996 344 YLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKV--PRC--NS-SWA-----DEYIRQFK------N 407 (547)
Q Consensus 344 ~l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~--P~l--N~-~~~-----~~~i~~~~------~ 407 (547)
+....++-+.+-++++..++ .++|++.+|..+++.||.+. |.. +. .+. +-+-+... .
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~-------~~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~p~~~~~~~~ 323 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRK-------HGTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFLPEDSELRDE 323 (480)
T ss_pred EEEEEECHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCCCcccccccc
Confidence 34456666666666665543 25799999999999999973 222 11 111 11101111 1
Q ss_pred ccEEEEeecCCCeEEeEEccCC-----CCCHHHHHHHHHHHHHH-HhcCC------------C-CCCC-----------C
Q 008996 408 VNINVAVQTENGLYVPVIRDAD-----KKGLSTIAEEVRQLAQK-AKDNS------------L-KPQD-----------Y 457 (547)
Q Consensus 408 vnIgvAV~~~~GL~vPVI~~ad-----~~sl~eIa~~i~~l~~k-ar~g~------------L-~~~d-----------~ 457 (547)
...|..|...+ +.+.+...+ ...+.++++++++-+.+ ...+. + .-.| .
T Consensus 324 ~~~g~~v~~~~--~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~ 401 (480)
T PF07247_consen 324 YSYGNFVGGID--FSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSKIGKP 401 (480)
T ss_pred ccceeEEEccc--eeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhhcCCC
Confidence 22343333221 112222222 13578888888865544 33221 0 0011 1
Q ss_pred CCCcEEEEeCCCcCCc-c---c-EEE-eeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHH-HH
Q 008996 458 EGGTFTVTNLGGPFGI-K---Q-FCA-IINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIG-AE 530 (547)
Q Consensus 458 ~ggTfTISNlG~~~G~-~---~-~tp-iinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~a-a~ 530 (547)
.++||.|||||. +.. . + ..- +...++. .+|..-.-=|+...+|. |++++++=.=+++-.+. -.
T Consensus 402 r~~t~evSNLG~-~~~~~~~~~~I~~~~Fsq~~~---~~~~~f~~~viS~~~G~------L~i~~s~~~~~~~~~~~~~~ 471 (480)
T PF07247_consen 402 RRSTFEVSNLGV-FDFEENGKWKIEDMVFSQSAG---VIGSAFSFNVISTKGGG------LNISISWQEGIVEDEEMEDE 471 (480)
T ss_pred CCCcEEEEeCCc-ccCCCCCCeEEEEEEEeCCCC---CCcCCEEEEEEEcCCCc------eEEEEEEeCCcccccchHHH
Confidence 478999999998 762 1 0 111 1111111 02222111111112332 78888876666665555 58
Q ss_pred HHHHHHHhh
Q 008996 531 WLKAFKGYI 539 (547)
Q Consensus 531 FL~~lk~~L 539 (547)
|++.|++.|
T Consensus 472 ~~~~~~~~~ 480 (480)
T PF07247_consen 472 FMELFKQNL 480 (480)
T ss_pred HHHHHHhhC
Confidence 999998765
No 104
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=90.61 E-value=0.35 Score=45.41 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=35.1
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEE-EecCcCeEEEEEe
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIV 176 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~e-v~ap~~G~l~ki~ 176 (547)
-||..+-..+.+||.|.+||.|+-+.|-|-.+- +.||.+|+|.=+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 467777889999999999999999999999886 8999999997654
No 105
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=90.18 E-value=9 Score=41.55 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=84.6
Q ss_pred EEeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeecCC------
Q 008996 345 LTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTEN------ 418 (547)
Q Consensus 345 l~~~idv~~L~~lr~~l~~~~~~~~g~klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~~~------ 418 (547)
....++++.+.++.+ ..+.|++++++.|++.+|.++ ++.. ++ .....+.|++.|+...
T Consensus 232 ~~~~~~~~~l~~~a~----------~~g~T~ndvllaa~~~al~~~--~~~~--~~--~~~~~i~~~~pv~~R~~~~~~~ 295 (446)
T TIGR02946 232 AAQSLPLADVKAVAK----------AFGVTINDVVLAAVAGALRRY--LEER--GE--LPDDPLVAMVPVSLRPMEDDSE 295 (446)
T ss_pred EeeccCHHHHHHHHH----------HhCCCHHHHHHHHHHHHHHHH--HHHc--CC--CCCCceEEEEeeeccccccCCC
Confidence 345566666543321 125799999999999999885 2221 11 2223477777777421
Q ss_pred -----CeEEeEEccCCCCCHHHHHHHHHHHHHHHhcCCC-------------CCC-------------CCCCCcEEEEeC
Q 008996 419 -----GLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSL-------------KPQ-------------DYEGGTFTVTNL 467 (547)
Q Consensus 419 -----GL~vPVI~~ad~~sl~eIa~~i~~l~~kar~g~L-------------~~~-------------d~~ggTfTISNl 467 (547)
|++...+. .+..+..+-..++++-...+++... -|. .....|++|||+
T Consensus 296 ~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNv 374 (446)
T TIGR02946 296 GGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNV 374 (446)
T ss_pred CCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCC
Confidence 22222222 2223344444555555555544311 110 011348999999
Q ss_pred CCcCCcccE--------EEeeCCCceEEEEeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhh
Q 008996 468 GGPFGIKQF--------CAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYI 539 (547)
Q Consensus 468 G~~~G~~~~--------tpiinpPq~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~L 539 (547)
++|-.-.++ .++..++.-..|+++-.. -+| .|.+++++|-.++.. ..+|+..|.+.|
T Consensus 375 pg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-------y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l 439 (446)
T TIGR02946 375 PGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-------YNG------QLDFGLLADRDAVPD--PQELADALEAAL 439 (446)
T ss_pred CCCCcccEecCeeEEEeeccccccCCCeEEEEEEe-------cCC------eEEEEEeechhhCCC--HHHHHHHHHHHH
Confidence 874322211 111111111112222111 123 489999999988873 777888777766
Q ss_pred c
Q 008996 540 E 540 (547)
Q Consensus 540 E 540 (547)
+
T Consensus 440 ~ 440 (446)
T TIGR02946 440 E 440 (446)
T ss_pred H
Confidence 5
No 106
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=89.71 E-value=0.62 Score=42.77 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=30.8
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
...|.||.+|+|.++++.+|+ .|+.|++|+.+..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd-~V~~Gq~L~~lEa 94 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGD-QVTENQPLLILEA 94 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 557999999999999999998 9999999998844
No 107
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=89.34 E-value=0.39 Score=52.84 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=37.5
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEee
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~ 177 (547)
.|.-.+-+|++||+|..||+|++-... ..+.+.||.+|+|.+|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 355567899999999999999976532 578899999999999953
No 108
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=88.87 E-value=0.73 Score=48.61 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=33.9
Q ss_pred EEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 153 ~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
+.||++ .+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~-~VkkGq~L~~ld 80 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQ-AVKKGDLLFRID 80 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEEC
Confidence 445554 678999999999999999997 999999999984
No 109
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=88.62 E-value=0.71 Score=37.80 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=27.7
Q ss_pred EEecCcCeEEEE------EeeCCCCeeeeCCCEEEEEeccC
Q 008996 163 EMECMEEGYLAK------IVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 163 ev~ap~~G~l~k------i~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
+|.+|.-|.+.+ +++++|+ .|+.|++|+.+..+.
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~-~V~~G~~l~~iet~K 41 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGD-KVKKGDPLAEIETMK 41 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTE-EESTTSEEEEEESSS
T ss_pred EEECCCCccEEEecceeEEEECCCC-EEEcCceEEEEEcCc
Confidence 577787776555 9999997 999999999985543
No 110
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=88.54 E-value=0.65 Score=48.40 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.8
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.+.|.|+.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~-~V~kGq~L~~ld 74 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTD-YVKQGDVLVRLD 74 (334)
T ss_pred eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEEC
Confidence 678999999999999999997 999999999983
No 111
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=88.43 E-value=0.8 Score=43.22 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=29.9
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
..|.||..|+|.++++++|| .|..|++|+.+..
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd-~V~~Gq~l~~iEa 117 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQ-QVKVGQGLLILEA 117 (153)
T ss_pred CEEECCCCeEEEEEEeCCCC-EEcCCCEEEEEee
Confidence 46899999999999999998 9999999998743
No 112
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=87.76 E-value=0.5 Score=48.11 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=23.5
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
..|.++..|+|.+|++++|+ .|+.|++|+.+..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~-~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQ-RVKKGQVLARLDP 34 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTE-EE-TTSECEEE--
T ss_pred EEEeCCCCeEEEEEEccCcC-EEeCCCEEEEEEe
Confidence 57899999999999999997 9999999999843
No 113
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=87.56 E-value=0.56 Score=51.67 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=36.2
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~ 176 (547)
|.-.+-+|++||+|..||.|++-... ..+.+.||.+|+|.+|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 55567899999999999999965433 46889999999999994
No 114
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=87.51 E-value=1.6 Score=45.33 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=24.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe--CCeeEEEecCcCeEEEEE
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKI 175 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt--dKa~~ev~ap~~G~l~ki 175 (547)
+.+..++.||.|++||.|++|-. .....++.||.+|+|.-+
T Consensus 241 i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 241 LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44566677777777777776643 122345677777776543
No 115
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=87.50 E-value=1.1 Score=52.03 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=35.4
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~ 176 (547)
|.-.+-+|++||+|.+||+|++-. .-..+.|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 444568899999999999999653 2356899999999999885
No 116
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=86.62 E-value=0.46 Score=48.41 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=21.0
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 159 (547)
..|.|.+.+|++||.|++||+|+++....
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 45999999999999999999999998543
No 117
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=86.51 E-value=0.98 Score=49.57 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.4
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~ 176 (547)
|.-.+-.|++||+|+.||.|++-+ ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 444567899999999999999883 3468899999999999885
No 118
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=86.48 E-value=1.1 Score=46.70 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=35.1
Q ss_pred EEEEeCCeeEEEecCcC---eEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 153 CEVETDKATVEMECMEE---GYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 153 ~evEtdKa~~ev~ap~~---G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
+.|+...-.+.|.++.+ |+|.++++.+|+ .|+.|++|+.+..
T Consensus 5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~-~V~~G~~L~~ld~ 49 (327)
T TIGR02971 5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEGD-RVQAGQVLAELDS 49 (327)
T ss_pred ceEeecCceEEecCCCCCCCcEEEEEEccCCC-EecCCcEEEEecC
Confidence 34555555668899999 999999999998 9999999999843
No 119
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=85.99 E-value=0.66 Score=38.48 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=20.0
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
++-+.=..++++.||.|++||+||+|=++
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEES
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcC
Confidence 44555568888999999999999888654
No 120
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=85.96 E-value=1.5 Score=53.65 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
|...+..++.++.+..++.....+.. -..+|.||..|.|.++++++|+ .|+.|++|+++...
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd-~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQ-AVNKGDPLVVLEAM 1108 (1143)
T ss_pred CeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCC-EeCCCCEEEEEEec
Confidence 35666678888877777666554322 2347999999999999999998 89999999998543
No 121
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=85.33 E-value=1.6 Score=44.71 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=32.7
Q ss_pred EEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 154 evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.|+..+ +..|.+|.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~-~V~kG~~L~~l~ 58 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQ-KVKKGQVLARLD 58 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 344333 568999999999999999997 999999999883
No 122
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=85.21 E-value=2.6 Score=43.18 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=45.6
Q ss_pred EEEEEEcCCCCeecCCCeE--EEEEe--CCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 134 NIARWLKKEGDKVSPGEVL--CEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l--~evEt--dKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
=+..+.++.||.|++||+| .++-. +-...+|.||.+|+|. ...+.- .|..|+.|+.+.
T Consensus 229 G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~-~v~~G~~l~~v~ 290 (292)
T PF04952_consen 229 GLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESP-YVEQGDALAKVA 290 (292)
T ss_dssp EEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSS-ECTTTEEEEEEE
T ss_pred EEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCccc-ccCCCCeEEEEe
Confidence 3569999999999999999 55432 2345689999999995 445665 799999998764
No 123
>PF13437 HlyD_3: HlyD family secretion protein
Probab=84.95 E-value=1.9 Score=37.08 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=25.0
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
..|.|..|.+++|+.|.+|++|++|..
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 469999999999999999999999985
No 124
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=84.72 E-value=1 Score=46.41 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 153 ~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
+.|+. -+..|.++.+|.| ++++.+|+ .|+.|++|+.+..
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~-~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGD-KVKKGQVLAELDS 53 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTS-EEETT-EEEEEE-
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcC-EECCCCEEEEEEC
Confidence 45554 4567999999999 99999998 8999999999853
No 125
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=84.38 E-value=0.63 Score=43.95 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=36.1
Q ss_pred CCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCC
Q 008996 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (547)
Q Consensus 141 ~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G 180 (547)
++|-.|.+||.++-||+-|+.-+|.+|.+|.|.+|..+=.
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~ 128 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE 128 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence 6899999999999999999999999999999999864433
No 126
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.89 E-value=1.8 Score=46.31 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=36.1
Q ss_pred EEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 153 ~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
++|..+.....|.++.+|+|.++++.+|+ .|+.|++|+.+..
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~-~V~kG~~L~~ld~ 76 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGD-RVKAGQVLVELDA 76 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCC-EecCCCeEEEEcc
Confidence 35666777778999999999999999997 8999999998843
No 127
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=83.70 E-value=2.3 Score=46.32 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=43.7
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 136 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.-..++.|+.-..-+...+|+.. -.+.|.++.+|+|.++.+++|+ .|+.|++|+.|.
T Consensus 63 ~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~-~VkkGq~La~ld 119 (415)
T PRK11556 63 QAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEID 119 (415)
T ss_pred EEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCC-EecCCCEEEEEC
Confidence 33344555544444566778764 5678999999999999999997 999999999983
No 128
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=83.70 E-value=2.3 Score=45.25 Aligned_cols=57 Identities=12% Similarity=0.224 Sum_probs=40.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 135 IARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
+.-+.++.|+....=..-+.|+... .+.|.++.+|.|.++.+++|+ .|+.|++|+.+
T Consensus 36 v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~-~V~kG~~L~~l 92 (370)
T PRK11578 36 YQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVI 92 (370)
T ss_pred eEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCC-EEcCCCEEEEE
Confidence 3334444444332223444565443 558999999999999999997 99999999988
No 129
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.50 E-value=2.2 Score=47.02 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=33.2
Q ss_pred EEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 155 VETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 155 vEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
|+.+.-...|.++..|+|.++++++|+ .|+.|++|+.+..
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~-~V~~G~~L~~ld~ 92 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENK-FVKKGDLLVVYDN 92 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCC-EecCCCEEEEECc
Confidence 443444567899999999999999997 9999999999843
No 130
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=83.07 E-value=1.2 Score=42.15 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=25.2
Q ss_pred CCCeeEEEEEEcCCCCeecCCCeEEEEE
Q 008996 129 TMQEGNIARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 129 ~~~eg~i~~w~v~~Gd~V~~gd~l~evE 156 (547)
.-..|+|.+|+++.||.|..||+|++|+
T Consensus 129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 129 AEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 3467999999999999999999999985
No 131
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=83.01 E-value=2.8 Score=44.92 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=43.8
Q ss_pred EcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.++.|+....-+..+.|+... .++|.++.+|+|.++.+.+|+ .|+.|++|+.|.
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~-~VkkGqvLa~ld 93 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGD-KVNQGDSLYQID 93 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcC-EecCCCEEEEEC
Confidence 445555555556677887654 678999999999999999998 999999999983
No 132
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=82.70 E-value=1.3 Score=48.84 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=26.4
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
..+|+|.+|++++||.|..||+|+.||.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 45799999999999999999999999854
No 133
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=82.65 E-value=2.2 Score=46.35 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=31.5
Q ss_pred CeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 159 Ka~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
.-...|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 56 ~~~~~v~a~~~G~V~~i~V~eG~-~V~kGq~L~~l~~ 91 (421)
T TIGR03794 56 SGVDTIQSPGSGVVIDLDVEVGD-QVKKGQVVARLFQ 91 (421)
T ss_pred CceeEEECCCCeEEEEEECCCcC-EECCCCEEEEECc
Confidence 33458999999999999999997 9999999999843
No 134
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=82.36 E-value=1.4 Score=41.62 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEE
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evE 156 (547)
-.+|+|.+|+++.||.|..||+|++|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 367999999999999999999999885
No 135
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=82.15 E-value=1.9 Score=45.17 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.8
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd-~V~kG~~L~~ld 75 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGD-AVKAGQVLGELD 75 (331)
T ss_pred EEEeecccCcEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 668999999999999999998 999999999983
No 136
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=81.82 E-value=1.6 Score=46.27 Aligned_cols=40 Identities=35% Similarity=0.500 Sum_probs=32.7
Q ss_pred EEEcCCCCeecCCCeEEEEEeCCe--eEEEecCcCeEEEEEeeCC
Q 008996 137 RWLKKEGDKVSPGEVLCEVETDKA--TVEMECMEEGYLAKIVKGD 179 (547)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~evEtdKa--~~ev~ap~~G~l~ki~~~~ 179 (547)
...|++||.|++||+|+| ||- .+-++||.+|+|..|...+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 567899999999999996 554 4568999999999986443
No 137
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=81.17 E-value=1.3 Score=37.67 Aligned_cols=23 Identities=48% Similarity=0.993 Sum_probs=18.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
-++|++++||.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 35799999999999999999985
No 138
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=81.11 E-value=2.2 Score=46.03 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=31.0
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.+.|.++.+|+|.++.+++|+ .|+.|++|+.|.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd-~VkkGqvL~~LD 93 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTD-FVKEGDVLVTLD 93 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCC-EECCCCEEEEEC
Confidence 778999999999999999997 999999999983
No 139
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=80.60 E-value=2.4 Score=44.28 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=29.7
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
+.|.++.+|.|.++.+++|+ .|+.|++|+.+.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd-~VkkGqvLa~Ld 79 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQ-LVKKGQVLFTID 79 (310)
T ss_pred EEEccCCceEEEEEEeCCcC-EEcCCCEEEEEC
Confidence 56999999999999999998 999999999983
No 140
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=80.18 E-value=1.8 Score=44.26 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=24.1
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evE 156 (547)
.+|+|.+|++++||.|..||+|++||
T Consensus 248 ~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 248 QSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEec
Confidence 36899999999999999999999986
No 141
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=79.97 E-value=4.4 Score=43.45 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=42.0
Q ss_pred EcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.++.|+.-..-..-+.|+.+. .++|.++.+|+|.++.+++|+ .|+.|++|+.+
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd-~VkkGq~La~l 94 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAYR-QAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRI 94 (385)
T ss_pred EEEEecccceEEEEEEEEEee-EEEEeccCcEEEEEEECCCCC-EEcCCCEEEEE
Confidence 445555444445567777654 579999999999999999998 99999999998
No 142
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.11 E-value=1.8 Score=47.04 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=26.7
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa 160 (547)
..|.|.+.+|++||.|++||+|++|++...
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence 459999999999999999999999987633
No 143
>PRK09294 acyltransferase PapA5; Provisional
Probab=78.94 E-value=54 Score=35.22 Aligned_cols=91 Identities=22% Similarity=0.230 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCCceeccCcceecCcccEEEEeec-------------CC--CeEEeEEccCCCCCHHHH
Q 008996 372 RISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQT-------------EN--GLYVPVIRDADKKGLSTI 436 (547)
Q Consensus 372 klTi~~~liKA~a~AL~~~P~lN~~~~~~~i~~~~~vnIgvAV~~-------------~~--GL~vPVI~~ad~~sl~eI 436 (547)
++|++.++..|++.++.+.-... ...+.+++.|+. .+ |++...+.-....++.|+
T Consensus 229 ~~t~~~~l~Aa~~~~l~r~~~~~----------~~~i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~~~~~~~~sf~el 298 (416)
T PRK09294 229 RLTVNALVSAAILLAEWQLRRTP----------HVPLPYVYPVDLRFRLTPPVAATEGTNLLGAATYLAEIGPDTDIVDL 298 (416)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCC----------CCceeeecchhhHhhcCCCCCcccceeeEeeeeeeccccCCCCHHHH
Confidence 48999999999999987642110 001222233331 01 111111222234699999
Q ss_pred HHHHHHHHHHH-hcCCCC--C----CCCCC------CcEEEEeCCCcCCc
Q 008996 437 AEEVRQLAQKA-KDNSLK--P----QDYEG------GTFTVTNLGGPFGI 473 (547)
Q Consensus 437 a~~i~~l~~ka-r~g~L~--~----~d~~g------gTfTISNlG~~~G~ 473 (547)
++++++-.... ..+.+. . .-+.| .++++||+|. ++.
T Consensus 299 a~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~-~~~ 347 (416)
T PRK09294 299 ARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGV-APP 347 (416)
T ss_pred HHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCc-CCC
Confidence 99998765533 333211 0 01111 3799999998 753
No 144
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=78.11 E-value=1.9 Score=47.95 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=35.6
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe
Q 008996 136 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (547)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~ 176 (547)
...+|++||+|.+||+|.+=|. ..+-+.||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 4678999999999999998775 88899999999999997
No 145
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=76.03 E-value=3.7 Score=46.93 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=30.8
Q ss_pred EEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 163 ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
+|.||..|.|.++++++|+ .|+.|++|+++....
T Consensus 527 ~v~apm~G~V~~~~V~~Gd-~V~~Gq~L~~iEamK 560 (596)
T PRK14042 527 DITVAIPGSIIAIHVSAGD-EVKAGQAVLVIEAMK 560 (596)
T ss_pred eEecCcceEEEEEEeCCCC-EeCCCCEEEEEEecc
Confidence 6999999999999999998 999999999985443
No 146
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.14 E-value=2.6 Score=46.40 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=26.0
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa 160 (547)
..|.|.+.+|++||.|++||+|++++..-.
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 349999999999999999999999975433
No 147
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=74.75 E-value=4.3 Score=43.80 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=35.3
Q ss_pred eEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 151 VLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 151 ~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
..+.|+. .-.++|.+..+|+|.++.+++|+ .|+.|++|+.|.
T Consensus 56 ~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd-~VkkGqvLa~ld 97 (397)
T PRK15030 56 LPGRTSA-YRIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQID 97 (397)
T ss_pred EEEEEEE-EEEEEEEecCcEEEEEEEcCCCC-EecCCCEEEEEC
Confidence 3456664 34678999999999999999998 999999999983
No 148
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=74.70 E-value=7.1 Score=37.50 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+|+--+++|++||+|++||+|+++.-+
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHH
Confidence 367789999999999999999999764
No 149
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=74.69 E-value=2.7 Score=38.30 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.3
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+|+-.++++++||+|++||+|+++--+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 466789999999999999999998643
No 150
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=73.62 E-value=7.9 Score=38.18 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=41.7
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCE-EEE
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEV-IAI 192 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~-l~~ 192 (547)
+.|.. ++++|+.|++||.+.-++-- .++++--|.+ .++.+++|+ .|..|+. |+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~-kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQ-KVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCC-EEEcccEEEEE
Confidence 45554 46899999999999999876 5666666665 278899997 8999985 454
No 151
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=73.54 E-value=3 Score=37.90 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+|+-.++++++||+|++||+|+++.-+
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 366689999999999999999998643
No 152
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=72.91 E-value=10 Score=38.73 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=36.1
Q ss_pred CCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 148 PGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 148 ~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
.-.....++. .-..++.++..|.|.++++++|+ .|+.|++|+.+..
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~-~Vk~Gq~L~~ld~ 99 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGD-RVKKGQLLARLDP 99 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCC-eecCCCEEEEECC
Confidence 3344455555 34447888899999999999997 9999999998844
No 153
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=72.48 E-value=5.1 Score=45.72 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=31.3
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..|.||..|.|.++++++|+ .|+.|++|+++....
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd-~V~~G~~l~~iEamK 552 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQ-TVAEGEVLLILEAMK 552 (582)
T ss_pred CeEeCCccEEEEEEEeCCCC-EECCCCEEEEEEecc
Confidence 47999999999999999998 999999999985443
No 154
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=72.18 E-value=4.7 Score=41.99 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=26.5
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 159 (547)
..|+|.+.++++||.|..|++|+.|+.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999998754
No 155
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=72.15 E-value=4.1 Score=44.54 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=26.5
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
..+|+|.++++++||.|..|++|++|++.
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 45799999999999999999999999864
No 156
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=71.73 E-value=4.7 Score=44.00 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=27.2
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 159 (547)
..+|+|.++++++||.|..|++|++||++.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 467999999999999999999999998654
No 157
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=71.67 E-value=5.7 Score=43.19 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=39.6
Q ss_pred CCCCeecCCCeEEEEEeC-CeeEEEecCcCeEEEEEe-eCCCCeeeeCCCEEEEEe
Q 008996 141 KEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIV-KGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 141 ~~Gd~V~~gd~l~evEtd-Ka~~ev~ap~~G~l~ki~-~~~G~~~v~vG~~l~~i~ 194 (547)
+.++.-..-+..+.|+-| .-...|.++.+|+|.+++ +.+|+ .|+.|++|+.+.
T Consensus 102 ~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd-~VkkGq~La~l~ 156 (409)
T PRK09783 102 TRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLT 156 (409)
T ss_pred EEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEEecCCCC-EECCCCEEEEEe
Confidence 334433333445667654 345689999999999998 89998 999999999984
No 158
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=71.66 E-value=3.5 Score=42.16 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=25.6
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 569999999999999999999999987
No 159
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=71.42 E-value=4.6 Score=43.21 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=31.5
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..|.||.+|+|.+..++.|+ .|.+|.+|+.+++..
T Consensus 209 T~IrAP~dG~V~~~~v~~G~-~V~~G~~l~alVp~~ 243 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQ-YVSAGTPLMALVPLD 243 (352)
T ss_pred CEEECCCCceEEeecccCCC-eecCCCceEEEeccc
Confidence 34999999999999999997 999999999887754
No 160
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=71.41 E-value=4.8 Score=43.84 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=27.0
Q ss_pred CCCeeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 129 ~~~eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
...+|+|.++++++||.|..|++|++|+.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 346799999999999999999999999865
No 161
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=70.26 E-value=5.1 Score=30.55 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEV 155 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~ev 155 (547)
.|++.++++++|+.|..|++|++|
T Consensus 51 ~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 51 AGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CEEEEEEeeCCcCEeCCCCEEEEC
Confidence 477999999999999999999875
No 162
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=70.18 E-value=5.4 Score=43.61 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCCeeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 008996 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (547)
Q Consensus 129 ~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 159 (547)
...+|+|.+|++++||.|..|++|++|+++.
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 3467999999999999999999999998654
No 163
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=70.00 E-value=11 Score=36.77 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=40.6
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEE
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l 190 (547)
..|..| +++|+.|++||.+.-++-- .++++--|.+ .++.+++|+ .|..|+.|
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~-~V~~G~tl 181 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGE-KVTAGETV 181 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCC-EEEeceEE
Confidence 345444 5899999999999999865 5666666665 267899997 89999976
No 164
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=69.58 E-value=15 Score=34.75 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=24.0
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+|+--+-++++||+|++||+|+++.-|
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHH
Confidence 377889999999999999999998765
No 165
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=68.74 E-value=5.9 Score=31.73 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.9
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEV 155 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~ev 155 (547)
.+|+|.+|++++|+.|..|+.|++|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4699999999999999999999875
No 166
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=68.46 E-value=12 Score=35.84 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.7
Q ss_pred EeeCCCCeeeeCCCEEEEE
Q 008996 175 IVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 175 i~~~~G~~~v~vG~~l~~i 193 (547)
.++++|+ .|+.|++|+.+
T Consensus 106 ~~Vk~Gd-~Vk~G~~L~~~ 123 (169)
T PRK09439 106 RIAEEGQ-RVKVGDPIIEF 123 (169)
T ss_pred EEecCCC-EEeCCCEEEEE
Confidence 4789997 89999999887
No 167
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=68.41 E-value=7 Score=44.73 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.7
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
...|.||..|.|.++.+++|+ .|+.|++|+++..
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd-~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQ-TVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCCC-EeCCCCEEEEEec
Confidence 447999999999999999998 8999999999743
No 168
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.32 E-value=11 Score=34.70 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=39.5
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEE-EecCcCeEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKI 175 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~e-v~ap~~G~l~ki 175 (547)
.||-++--.+..|+.|.+||+++-|.|-|-.+- +++|.+|++.=+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 478888889999999999999999999998887 789999998644
No 169
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=67.23 E-value=10 Score=37.10 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=43.1
Q ss_pred eeEEEEEEc-CCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEE
Q 008996 132 EGNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (547)
Q Consensus 132 eg~i~~w~v-~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~ 192 (547)
=+.|.-|.. ++|+.|++||.+.-++= -.++.+--|.+-.. ++.++.|+ .|..|+.|++
T Consensus 144 v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~-~V~~Ge~i~~ 202 (202)
T PF02666_consen 144 VGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQ-KVRAGETIGY 202 (202)
T ss_pred eceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCC-EEEeeeEEeC
Confidence 356666654 69999999999999986 55555444443333 78899997 8999999863
No 170
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=65.48 E-value=7.4 Score=42.40 Aligned_cols=39 Identities=31% Similarity=0.561 Sum_probs=31.5
Q ss_pred eEEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeCCee
Q 008996 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKAT 161 (547)
Q Consensus 119 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~ 161 (547)
..+.+|.. .+|+|.+.++++||.|..|++|+.|++.-..
T Consensus 44 a~~EV~ap----~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~ 82 (404)
T COG0508 44 ATMEVPAP----DAGVLAKILVEEGDTVPVGAVIARIEEEGAD 82 (404)
T ss_pred eeEEecCC----CCeEEEEEeccCCCEEcCCCeEEEEecCCCc
Confidence 34455543 5799999999999999999999999986443
No 171
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=65.47 E-value=13 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=12.9
Q ss_pred eeCCCCeeeeCCCEEEEE
Q 008996 176 VKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 176 ~~~~G~~~v~vG~~l~~i 193 (547)
++++|+ .|+.|++|+.+
T Consensus 89 ~v~~G~-~V~~G~~L~~~ 105 (132)
T PF00358_consen 89 LVKEGD-KVKAGQPLIEF 105 (132)
T ss_dssp SS-TTS-EE-TTEEEEEE
T ss_pred EEeCCC-EEECCCEEEEE
Confidence 778997 89999999886
No 172
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=65.43 E-value=2.4 Score=39.03 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+|+--+|++++||+|++||+|+++.-+
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~ 108 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLE 108 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHH
Confidence 466789999999999999999998654
No 173
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=65.43 E-value=17 Score=33.12 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.0
Q ss_pred EEEEeeCCCCeeeeCCCEEEEE
Q 008996 172 LAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 172 l~ki~~~~G~~~v~vG~~l~~i 193 (547)
=-+.++++|+ .|..|++|+.+
T Consensus 81 gF~~~vk~Gd-~V~~G~~l~~~ 101 (124)
T cd00210 81 GFTSHVEEGQ-RVKQGDKLLEF 101 (124)
T ss_pred ceEEEecCCC-EEcCCCEEEEE
Confidence 3345789997 89999999886
No 174
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=65.08 E-value=8.1 Score=43.51 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=30.3
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
-.+.||..|+|..+.+++|+ .|..|++|+++...
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~-~V~~G~~lvvlEAM 609 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQ-EVSAGDLLVVLEAM 609 (645)
T ss_pred CceecCCCceEEEEEecCCC-EecCCCeEEEeEeh
Confidence 35899999999999999997 99999999988543
No 175
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.98 E-value=9.7 Score=43.58 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=30.8
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
...|.||.+|+|.++.+++|+ .|+.|++|+.+..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd-~V~~Gq~L~~iea 555 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGD-KVKAGDTVLVLEA 555 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 367999999999999999998 9999999999843
No 176
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=63.24 E-value=9.1 Score=43.97 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+|+--+.+|++||+|++||+|+++.-+
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHH
Confidence 466789999999999999999999765
No 177
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=62.35 E-value=20 Score=32.54 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=16.9
Q ss_pred EEEeeCCCCeeeeCCCEEEEE
Q 008996 173 AKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 173 ~ki~~~~G~~~v~vG~~l~~i 193 (547)
-+.++++|+ .|+.|++|+.+
T Consensus 82 F~~~v~~Gd-~V~~G~~l~~~ 101 (121)
T TIGR00830 82 FTSHVEEGQ-RVKKGDPLLEF 101 (121)
T ss_pred eEEEecCCC-EEcCCCEEEEE
Confidence 356789997 89999999987
No 178
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=61.30 E-value=10 Score=46.98 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=30.4
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
..|.||..|.|.++++++|+ .|+.|++|+++..+
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd-~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGD-RVEAGQPLVILEAM 1166 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCC-EECCCCEEEEEEec
Confidence 45999999999999999998 99999999998443
No 179
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=59.88 E-value=11 Score=41.41 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=26.4
Q ss_pred CeeEEEEEEcCCCCe-ecCCCeEEEEEeCC
Q 008996 131 QEGNIARWLKKEGDK-VSPGEVLCEVETDK 159 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~-V~~gd~l~evEtdK 159 (547)
.+|+|.+|++++||. |..|++|++||.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 569999999999999 99999999998654
No 180
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=59.59 E-value=20 Score=34.08 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.5
Q ss_pred eEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 170 GYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 170 G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
|.--+.++++|+ .|++||+|..+
T Consensus 86 GegF~~~v~~Gd-~Vk~Gd~Li~f 108 (156)
T COG2190 86 GEGFESLVKEGD-KVKAGDPLLEF 108 (156)
T ss_pred CcceEEEeeCCC-EEccCCEEEEE
Confidence 444455899997 89999999886
No 181
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=59.34 E-value=15 Score=40.95 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=36.6
Q ss_pred EEEEeCCeeEEEecCcCeEEEEE------------------------eeCCCCeeeeCCCEEEEEeccC
Q 008996 153 CEVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 153 ~evEtdKa~~ev~ap~~G~l~ki------------------------~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..+..-+-+.+|.|+.+|+|..| +++.|+ .|+.|++|+.|..+.
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd-~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGD-QVKKGDPLYTIYAES 472 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCC-EecCCCeEEEEECCC
Confidence 33455678899999999999988 789998 899999999997443
No 182
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=59.24 E-value=18 Score=41.72 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.5
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+|+--+++|++||+|++||+|+++.-+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHH
Confidence 356679999999999999999999764
No 183
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=56.60 E-value=16 Score=39.06 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEe
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.+.|.+..+|+|.++.+.+.+ .|+.|++|+.|.
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq-~Vk~Gd~L~~iD 85 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQ-LVKKGDVLFRID 85 (352)
T ss_pred EEEEcCcCceEEEEEEecCCC-EecCCCeEEEEC
Confidence 346889999999999999997 899999999983
No 184
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=55.87 E-value=11 Score=38.90 Aligned_cols=24 Identities=50% Similarity=0.959 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 008996 134 NIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
.-..|++++||.|++||+|+++|-
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G 87 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEG 87 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEec
Confidence 345899999999999999999984
No 185
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=54.65 E-value=14 Score=40.97 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCCeeEEEEEEcCCCC-eecCCCeEEEEEeCC
Q 008996 129 TMQEGNIARWLKKEGD-KVSPGEVLCEVETDK 159 (547)
Q Consensus 129 ~~~eg~i~~w~v~~Gd-~V~~gd~l~evEtdK 159 (547)
...+|+|.++++++|+ .|+.|++|++++.+.
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 3468999999999995 799999999998643
No 186
>PRK12999 pyruvate carboxylase; Reviewed
Probab=53.74 E-value=16 Score=45.05 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=30.7
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
.+|.||..|+|.++++++|+ .|+.|++|+++...
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd-~V~~G~~L~~leam 1110 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGD-EVKAGDPLAVIEAM 1110 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCC-EECCCCEEEEEEcc
Confidence 56999999999999999998 99999999988543
No 187
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=51.87 E-value=22 Score=46.90 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.5
Q ss_pred EEEcCCCCeecCCCeEEEE
Q 008996 137 RWLKKEGDKVSPGEVLCEV 155 (547)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~ev 155 (547)
..+|++|+.|++||+||+.
T Consensus 2423 ~l~v~~g~~V~~g~~la~w 2441 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEW 2441 (2836)
T ss_pred EEEecCCCEecCCCEEEEE
Confidence 5789999999999999986
No 188
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=50.79 E-value=26 Score=35.92 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=40.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 134 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
.|..|.. +|+.|++||.+..++-- .++.+--|. |.+ ++.++.|+ .|..|+.|+.|
T Consensus 211 ~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~-~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGK-SVKFGESIGEI 265 (265)
T ss_pred ceeeecc-CCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCC-EEEcchhhccC
Confidence 3445543 59999999999999874 555554443 334 57789997 89999998753
No 189
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=50.78 E-value=13 Score=40.59 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=35.7
Q ss_pred EEEeCCeeEEEecCcCeEEEEE-------------------------------eeCCCCeeeeCCCEEEEEecc
Q 008996 154 EVETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 154 evEtdKa~~ev~ap~~G~l~ki-------------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (547)
.+-..+.+.+|.|+.+|||..| +++.|+ .|..|++|++|..+
T Consensus 326 ~~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~-~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 326 KLPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGD-RVKKGDPLATLYSS 398 (405)
T ss_pred cCCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcC-EeCCCCeEEEEeCC
Confidence 3456788899999999999987 788997 89999999998743
No 190
>PRK04350 thymidine phosphorylase; Provisional
Probab=50.53 E-value=26 Score=39.18 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=35.9
Q ss_pred EEeCCeeEEEecCcCeEEEEE------------------------eeCCCCeeeeCCCEEEEEeccC
Q 008996 155 VETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 155 vEtdKa~~ev~ap~~G~l~ki------------------------~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
+..-+.+.+|.|+.+|+|..| +++.|+ .|+.|++|++|..+.
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd-~V~~G~~l~~i~a~~ 464 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGD-KVKKGDPLYTIHAES 464 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCC-EecCCCeEEEEecCC
Confidence 455678899999999999988 789997 899999999987433
No 191
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=50.42 E-value=25 Score=38.81 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=34.0
Q ss_pred eCCeeEEEecCcCeEEEEE-------------------------------eeCCCCeeeeCCCEEEEEeccC
Q 008996 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 157 tdKa~~ev~ap~~G~l~ki-------------------------------~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.-+-+.+|.|+.+|||.+| +++.|+ .|+.|++|+++..+.
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd-~V~~Gd~l~~i~~~~ 405 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGD-RVEKGEPLAVVHAAD 405 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcC-EeCCCCeEEEEECCC
Confidence 4577889999999999988 788997 899999999997433
No 192
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=49.95 E-value=26 Score=39.26 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=35.2
Q ss_pred EEeCCeeEEEecCcCeEEEEE------------------------eeCCCCeeeeCCCEEEEEeccC
Q 008996 155 VETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 155 vEtdKa~~ev~ap~~G~l~ki------------------------~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
+-.-+.+.+|.||.+|||..| +++.|+ .|+.|++|+.+..+.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd-~V~~G~pl~~i~a~~ 473 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGE-KVKKGDPLYTIYAES 473 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcC-EeCCCCeEEEEECCC
Confidence 345677889999999999988 788997 899999999997443
No 193
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=49.36 E-value=40 Score=36.32 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=39.6
Q ss_pred EcCCCCeecCCCeEEEEE-eCCeeEEE--ecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 139 LKKEGDKVSPGEVLCEVE-TDKATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~evE-tdKa~~ev--~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
.+++||.|..||.+.+|. |.-.+.-| +.-..|.|..+ +.+|+ ..+-++++.+..
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~--~~~~~~~~~~~~ 110 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD--YTVDDVILEVEF 110 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC--eeEEEEEEEEEe
Confidence 479999999999999875 43344444 44458999765 57785 778888887754
No 194
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.12 E-value=18 Score=37.14 Aligned_cols=26 Identities=50% Similarity=0.906 Sum_probs=22.0
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
++--++|++++|+.|++||+|++++-
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEE
Confidence 35556899999999999999999984
No 195
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=48.41 E-value=23 Score=38.53 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=27.4
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa 160 (547)
..+|+|.++++++|+.|..|++|++|+.+..
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 3579999999999999999999999987553
No 196
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.21 E-value=18 Score=37.54 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.0
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 008996 136 ARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~evEt 157 (547)
++|++++|+.|++||+|++++-
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 5999999999999999999873
No 197
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=47.84 E-value=29 Score=38.36 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred eCCeeEEEecCcCeEEEEE-------------------------------eeCCCCeeeeCCCEEEEEeccC
Q 008996 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 157 tdKa~~ev~ap~~G~l~ki-------------------------------~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..+-..+|.|+.+|+|..| +++.|+ .|..|++|+.|..+.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~-~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGD-RVDAGEPLATLHADD 406 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcC-EECCCCeEEEEeCCC
Confidence 4677899999999999887 788997 899999999997433
No 198
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=46.89 E-value=30 Score=38.10 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=35.0
Q ss_pred EEeCCeeEEEecCcCeEEEEE-------------------------------eeCCCCeeeeCCCEEEEEecc
Q 008996 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 155 vEtdKa~~ev~ap~~G~l~ki-------------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (547)
+-.-+...+|.|+.+|||..| +++.|+ .|+.|++|+++..+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~-~V~~g~~l~~i~~~ 400 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGD-SVKKGESLATIYAN 400 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcC-EeCCCCeEEEEeCC
Confidence 445677889999999999988 788997 89999999999843
No 199
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=46.68 E-value=50 Score=37.20 Aligned_cols=57 Identities=30% Similarity=0.300 Sum_probs=41.8
Q ss_pred cCCCCeecCCCeEEEEE-eCCe-eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 140 KKEGDKVSPGEVLCEVE-TDKA-TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 140 v~~Gd~V~~gd~l~evE-tdKa-~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
+++||.|..||+|.+|. |.-. .+-|+.+..|.+..+.+.+|+ ..|-++|+.+..+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEecCCC
Confidence 47999999999999774 4322 223556667777778888895 899999999855444
No 200
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=45.09 E-value=26 Score=36.47 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.5
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
..-|.||.+|.+. ..++.|+ .|+.|++|+.+.+.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~-~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGD-IVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCC-EECCCCEEEEEeCC
Confidence 5679999999996 5589997 99999999999764
No 201
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.70 E-value=22 Score=36.96 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
-++|++++|+.|++||+|++++-
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 45999999999999999999873
No 202
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=44.64 E-value=34 Score=35.53 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=30.0
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
..-|.||.+|.+. ..++.|+ .|+.||+|+.|.+.-
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~-~V~~Gq~lg~I~dp~ 265 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGD-TIPAGQPLGRVVDLY 265 (293)
T ss_pred eEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 5678999999995 6689997 999999999997643
No 203
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=44.54 E-value=42 Score=28.28 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=32.4
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
+.+|+|+.+-..+ ...-...|+...-..-+- |-+.++.++.|+ .|+.|+.|+.+..
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y----~~l~~~~v~~G~-~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVY----GHLDSVSVKVGD-RVKAGQVIGTVGN 74 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEE----EEESEESS-TTS-EE-TTCEEEEEBS
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEE----eccccccceecc-cccCCCEEEecCC
Confidence 5678887766633 223444455433222111 235566789997 8999999999753
No 204
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=44.50 E-value=44 Score=38.17 Aligned_cols=66 Identities=17% Similarity=0.328 Sum_probs=47.1
Q ss_pred EecCCCCCCCCeeEEEEE-----EcCCCCeecCCCeEEEEE-eCCeeEE--EecCcCeEEEEEeeCCCCeeeeCCCEEEE
Q 008996 121 IGMPSLSPTMQEGNIARW-----LKKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (547)
Q Consensus 121 i~mP~lg~~~~eg~i~~w-----~v~~Gd~V~~gd~l~evE-tdKa~~e--v~ap~~G~l~ki~~~~G~~~v~vG~~l~~ 192 (547)
+.+|.|... .+| .+++||.|..||++++|. |.-.+.- |+.-..|+|..+ +.+|+ ..+.++|+.
T Consensus 106 ~~~~~ld~~------~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~ 176 (591)
T TIGR01042 106 VNVPALDRD------KKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLE 176 (591)
T ss_pred CCCCCCCcc------ccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEE
Confidence 346666532 456 588899999999999754 4444433 344557999876 67885 889999999
Q ss_pred Eec
Q 008996 193 TVE 195 (547)
Q Consensus 193 i~~ 195 (547)
+..
T Consensus 177 ~~~ 179 (591)
T TIGR01042 177 VEF 179 (591)
T ss_pred Eee
Confidence 864
No 205
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=44.44 E-value=24 Score=40.02 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.7
Q ss_pred CCeeEEEEEEcCCCC-eecCCCeEEEEEe
Q 008996 130 MQEGNIARWLKKEGD-KVSPGEVLCEVET 157 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd-~V~~gd~l~evEt 157 (547)
..+|+|.++++++|| .|..|++||+++.
T Consensus 161 ~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 161 MEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred CCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 457999999999996 7999999998854
No 206
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=44.10 E-value=22 Score=36.93 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 008996 135 IARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evE 156 (547)
-++|++++|+.|++||+|++++
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEE
Confidence 3599999999999999999887
No 207
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.99 E-value=22 Score=36.77 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.2
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 008996 136 ARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~evEt 157 (547)
++|++++|+.|++||+|++++-
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6999999999999999999874
No 208
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=43.98 E-value=22 Score=36.58 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 008996 134 NIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
.-++|++++|+.|++||+|++++-
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEE
Confidence 345899999999999999999874
No 209
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=43.29 E-value=32 Score=35.56 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=29.6
Q ss_pred eeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 160 a~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
...-+.||..|.+. ..++.|+ .|+.|++|+.+.+.
T Consensus 222 ~~~~v~Ap~~G~~~-~~~~~G~-~V~~G~~lg~i~dp 256 (288)
T cd06254 222 DVYYVTSPASGLWY-PFVKAGD-TVQKGALLGYVTDY 256 (288)
T ss_pred CCEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECC
Confidence 45678999999996 6678997 89999999998764
No 210
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=43.05 E-value=4.1e+02 Score=29.26 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=43.7
Q ss_pred CcccHHHHHHHHH--HHHHhh--CCCCCceeccCcceecCcccEEEEeec------C-------CCeEEeEEccCCCCCH
Q 008996 371 KRISVNDLVIKAA--ALALRK--VPRCNSSWADEYIRQFKNVNINVAVQT------E-------NGLYVPVIRDADKKGL 433 (547)
Q Consensus 371 ~klTi~~~liKA~--a~AL~~--~P~lN~~~~~~~i~~~~~vnIgvAV~~------~-------~GL~vPVI~~ad~~sl 433 (547)
...|++|+++.|+ -+.+-. |+.+|. .+.|++.||. . .+....+|+..|--++
T Consensus 237 ~gaTiNDiilaa~~~fr~~y~~~~~k~~~-----------~lsi~~~VDlRkyl~sk~~sI~Nls~~~~i~I~~dd~~~f 305 (439)
T COG4908 237 HGATINDIILAALLKFRLLYNTTHEKANN-----------YLSIDMPVDLRKYLPSKEESISNLSSYLTIVINVDDVTDF 305 (439)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhhchhhcC-----------eeeeceeeehhhhccccccceeccceeEEEEEeccccccH
Confidence 3579999999998 444333 444443 4556666661 1 2467788999888899
Q ss_pred HHHHHHHHHHHH
Q 008996 434 STIAEEVRQLAQ 445 (547)
Q Consensus 434 ~eIa~~i~~l~~ 445 (547)
....+.+++...
T Consensus 306 e~t~~~vk~~~~ 317 (439)
T COG4908 306 EKTLEKVKGIMN 317 (439)
T ss_pred HHHHHHHHhhcC
Confidence 988888887654
No 211
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.84 E-value=24 Score=36.30 Aligned_cols=25 Identities=52% Similarity=0.874 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 133 g~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
+.-++|++++|+.|++||+|++++-
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 4445899999999999999999984
No 212
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=42.61 E-value=31 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.4
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
+--|.||.+|.+.. .++-|+ .|+.|++|+.+.+
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd-~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGD-SVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCC-EEeCCCEEEEEcC
Confidence 45599999999976 789997 9999999999843
No 213
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.76 E-value=25 Score=36.58 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
-.+|++++|+.|++||+|++++-
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 45799999999999999999873
No 214
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.34 E-value=26 Score=36.60 Aligned_cols=22 Identities=32% Similarity=0.809 Sum_probs=19.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 008996 135 IARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evE 156 (547)
-++|+++.||.|++||+|++++
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEE
Confidence 4699999999999999999886
No 215
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=41.32 E-value=24 Score=39.47 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCCCCCeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 126 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
+|..++-+-=+.++++.||.|++||+|++|=.
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 45566777778999999999999999999863
No 216
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.31 E-value=26 Score=36.19 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 008996 136 ARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~evEt 157 (547)
.+|++++|+.|++||+|++++-
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5999999999999999999873
No 217
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=41.18 E-value=36 Score=39.42 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=23.6
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa 160 (547)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 35667889999999999999999876543
No 218
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=40.86 E-value=36 Score=35.13 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.8
Q ss_pred eeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 160 a~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
...-+.||.+|.+. ..++.|+ .|+.|++|+.+.+.
T Consensus 218 ~~~~v~A~~~G~~~-~~~~~Gd-~V~~G~~ig~i~d~ 252 (287)
T cd06251 218 SSVWVRAPQGGLLR-SLVKLGD-KVKKGQLLATITDP 252 (287)
T ss_pred CCeEEecCCCeEEE-EecCCCC-EECCCCEEEEEECC
Confidence 33579999999996 5789998 99999999998764
No 219
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=40.80 E-value=23 Score=39.03 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCCCeeEEEEEEcCCCCeecCCCeEEEEE
Q 008996 128 PTMQEGNIARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 128 ~~~~eg~i~~w~v~~Gd~V~~gd~l~evE 156 (547)
+.++-+-=+.|+++.||.|++||+|++|=
T Consensus 374 d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 374 DTIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CCcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 34555666799999999999999999986
No 220
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=40.77 E-value=40 Score=36.15 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.1
Q ss_pred EEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 162 ~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.-|.||..|.+. ..++.|+ .|+.|++|+.+.+.-
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd-~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGD-WVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 359999999996 6689998 999999999997644
No 221
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=40.75 E-value=27 Score=36.55 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
-++|++++|+.|++||+|++++-
T Consensus 86 ~v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 86 TIEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 35899999999999999998873
No 222
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.71 E-value=27 Score=36.42 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
-++|++++|+.|++||+|++++-
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 45899999999999999999874
No 223
>PRK12784 hypothetical protein; Provisional
Probab=40.65 E-value=41 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa 160 (547)
.|.|....|.+||+|..|-.|+.+|.|-.
T Consensus 51 SG~I~~v~Ve~Gq~i~~dtlL~~~edDll 79 (84)
T PRK12784 51 SGNIRLVNVVVGQQIHTDTLLVRLEDDLL 79 (84)
T ss_pred eeeEEEEEeecCceecCCcEEEEEeeceE
Confidence 48899999999999999999999998753
No 224
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=40.35 E-value=27 Score=36.70 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 008996 134 NIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
.-++|++++|+.|++||+|++++-
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 345799999999999999999873
No 225
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=40.24 E-value=50 Score=36.13 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=34.9
Q ss_pred EEEeCCeeEEEecCcCeEEEEE-------------------------------eeCCCCeeeeCCCEEEEEeccC
Q 008996 154 EVETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 154 evEtdKa~~ev~ap~~G~l~ki-------------------------------~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.+..-+...+|.|..+|+|.++ ..+.|+ .|++|++|+.+..+.
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge-~Vk~Gd~l~tiya~~ 402 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGE-KVKKGDPLATIYAES 402 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCC-eeccCCeEEEEecCC
Confidence 4445677888889999998887 678897 899999999998744
No 226
>PRK04350 thymidine phosphorylase; Provisional
Probab=40.21 E-value=26 Score=39.20 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.5
Q ss_pred CCCCCCeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 126 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
+|..++-+-=+.++++.||.|++||+|++|=.
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 55567777778999999999999999999863
No 227
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=39.48 E-value=54 Score=34.36 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.4
Q ss_pred CeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 159 Ka~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
+...-|.||..|.+. ..++.|+ .|+.|++|+.+.+.
T Consensus 242 ~~~~~v~A~~~G~~~-~~~~~G~-~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLFE-PLVDLGD-EVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEEE-EecCCCC-EEcCCCEEEEEECC
Confidence 344679999999996 6689997 99999999999764
No 228
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=39.39 E-value=26 Score=39.23 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCCCCCeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 126 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
+|..++-+-=+.++++.||.|++||+|++|=.
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 55567777778999999999999999999863
No 229
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.04 E-value=30 Score=35.96 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 008996 134 NIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 134 ~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
.-++|++++|+.|++||+|++++-
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEE
Confidence 456999999999999999999873
No 230
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=38.87 E-value=26 Score=38.74 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCCCeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 128 PTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 128 ~~~~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
..++.+-=+.|+++.||.|++||+||+|=.
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 445566667999999999999999999873
No 231
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.40 E-value=31 Score=35.79 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
-++|++++|+.|++||+|++++-
T Consensus 59 ~v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 59 KVEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 45899999999999999998873
No 232
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=38.22 E-value=31 Score=35.40 Aligned_cols=22 Identities=59% Similarity=1.113 Sum_probs=19.6
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 008996 136 ARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~evEt 157 (547)
++|++++|+.|++||+|++++-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4899999999999999999874
No 233
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=37.65 E-value=48 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=21.1
Q ss_pred CcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 167 p~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
|..|+. +.++.|| .|+.|++|+.+..+.+
T Consensus 30 ~~vGi~--l~~k~Gd-~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGIE--LHKKVGD-RVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EEE--ESS-TTS-EEBTTSEEEEEEESSS
T ss_pred cCcCeE--ecCcCcC-EECCCCeEEEEEcCCh
Confidence 344654 6789998 8999999999876554
No 234
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=37.55 E-value=26 Score=41.26 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=29.0
Q ss_pred EecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 164 v~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
|-||..|+|.++.+..|+ .|+.|++|+++...
T Consensus 1082 igApmpG~Vv~v~V~~G~-~Vk~Gd~l~~ieAM 1113 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGD-KVKKGDVLAVIEAM 1113 (1149)
T ss_pred cCCCCCCceEEEEEccCC-eecCCCeeeehhhh
Confidence 889999999999999998 89999999987543
No 235
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=37.53 E-value=43 Score=35.45 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
..-|.||.+|.+. ..++.|+ .|+.|++|+.+.+
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G~-~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLGD-PVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEEE-EecCCCC-EeCCCCEEEEEEC
Confidence 4469999999996 6689997 9999999999976
No 236
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=37.32 E-value=41 Score=34.40 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=33.8
Q ss_pred cCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEE
Q 008996 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (547)
Q Consensus 140 v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~ 192 (547)
..+|+.|++||.+.-++-. .++.+--|.+-.--...+.+|+ .|..|+.|+.
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~-~V~~Ge~ig~ 257 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQ-EVRLGEKIGT 257 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCC-EEEcChhhcc
Confidence 3578888888888888877 5555554433222234567786 7888888764
No 237
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=37.12 E-value=28 Score=29.35 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=17.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEeC
Q 008996 135 IARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
+....|++||.|++||.|+.+...
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred cccccceecccccCCCEEEecCCC
Confidence 444458999999999999999753
No 238
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=36.77 E-value=70 Score=36.57 Aligned_cols=54 Identities=31% Similarity=0.415 Sum_probs=41.1
Q ss_pred EcCCCCeecCCCeEEEE-EeCCeeEE--EecCcCeEEEEEeeCCCCeeeeCCCEEEEEec
Q 008996 139 LKKEGDKVSPGEVLCEV-ETDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~ev-EtdKa~~e--v~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
.+++||.|..||++++| ||.-.+.. ++.-..|+|..| +.+|+ ..+-++++.+..
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~--~~~~~~v~~~~~ 176 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD--YTVEDTIAVVDT 176 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC--ceeeeeEEEEec
Confidence 37899999999999988 55544443 344468999876 67885 889999998754
No 239
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=36.35 E-value=37 Score=35.16 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
-++|+++.|+.|+.||+|++++-
T Consensus 61 ~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 61 SIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEe
Confidence 45899999999999999999873
No 240
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=35.23 E-value=32 Score=37.97 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEtdK 159 (547)
++-+-=+.|+++.||.|++||+|++|=+|+
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 466667799999999999999999987554
No 241
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=35.16 E-value=78 Score=36.27 Aligned_cols=57 Identities=26% Similarity=0.375 Sum_probs=42.1
Q ss_pred EcCCCCeecCCCeEEEEEeC-CeeE--EEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCC
Q 008996 139 LKKEGDKVSPGEVLCEVETD-KATV--EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~evEtd-Ka~~--ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~ 198 (547)
.+++||.|..||+|.+|.-. -... =|+.-..|.+..| +.+|+ ..+-++|+.+.+..+
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~--ytv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD--YTVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEEccCC
Confidence 47899999999999987643 2222 2455568999766 67885 889999998865443
No 242
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=35.12 E-value=30 Score=39.88 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=30.0
Q ss_pred EEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 163 ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
.|-||..|+|.+|.+++|+ -|+.|++|+++....
T Consensus 1108 ~igAPMpG~vieikvk~G~-kV~Kgqpl~VLSAMK 1141 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGA-KVKKGQPLAVLSAMK 1141 (1176)
T ss_pred cccCCCCCceEEEEEecCc-eecCCCceEeeecce
Confidence 3789999999999999998 799999999985543
No 243
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=35.12 E-value=32 Score=38.53 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=28.7
Q ss_pred EecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 164 v~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
+-||..|.|.|+++++|+ .|..|+.|+++...
T Consensus 604 ~~aPMpG~Iekv~Vkpgd-~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGD-KVKEGQELVVLIAM 635 (670)
T ss_pred eecCCCCeeeeeeccchh-hhcccCceEEEEec
Confidence 789999999999999997 89999999887543
No 244
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=34.70 E-value=43 Score=33.76 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEE
Q 008996 143 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (547)
Q Consensus 143 Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~ 192 (547)
|+.|++||.+.-++- -.++.+--|.+-+-.+..+.+|+ .|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~-kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQ-EVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCC-EEEcChhhcc
Confidence 999999999999987 45666555543222256788997 8999999864
No 245
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=34.66 E-value=34 Score=37.42 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
++-+-=+.++++.||.|++||+|++|=+
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 5666667999999999999999999864
No 246
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=34.38 E-value=40 Score=36.92 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=28.3
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHhhcCc
Q 008996 512 MSVTLSCDHRVIDGAIGAEWLKAFKGYIENP 542 (547)
Q Consensus 512 m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P 542 (547)
+-|++++.|.+.||.-+..||+.|.++....
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg~ 178 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRGH 178 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999988753
No 247
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=33.87 E-value=44 Score=36.32 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=27.8
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHhhcC
Q 008996 512 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 541 (547)
Q Consensus 512 m~ltlt~DHRviDGa~aa~FL~~lk~~LE~ 541 (547)
+-|++++.|.++||.-+..|++.+.+....
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999998865
No 248
>COG3608 Predicted deacylase [General function prediction only]
Probab=33.43 E-value=73 Score=33.90 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=33.5
Q ss_pred CeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEecc
Q 008996 150 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (547)
Q Consensus 150 d~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~ 196 (547)
......+++ .--+.||..|.| +.++..|| .|..|++|+++..-
T Consensus 247 ~~~~~~~~~--~~~i~Ap~~G~v-~~~v~lGd-~VeaG~~la~i~~~ 289 (331)
T COG3608 247 TKGLALPSS--DEMIRAPAGGLV-EFLVDLGD-KVEAGDVLATIHDP 289 (331)
T ss_pred cceeecccc--cceeecCCCceE-EEeecCCC-cccCCCeEEEEecC
Confidence 444455555 335899999999 58899998 89999999998653
No 249
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=32.47 E-value=75 Score=36.90 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=39.7
Q ss_pred eeEEEEEEcCCCCeec---CCCeEEEEEeCCeeEEEecCcCeEEEEE---------------------------------
Q 008996 132 EGNIARWLKKEGDKVS---PGEVLCEVETDKATVEMECMEEGYLAKI--------------------------------- 175 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~---~gd~l~evEtdKa~~ev~ap~~G~l~ki--------------------------------- 175 (547)
+|++....--+.+... -||-++..=+| -.|.||++|+|..+
T Consensus 506 ~G~vi~l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF 582 (648)
T PRK10255 506 TGDVVALDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGF 582 (648)
T ss_pred CcEEEEcccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCc
Confidence 3555444333333332 37777766655 47889999999876
Q ss_pred --eeCCCCeeeeCCCEEEEE
Q 008996 176 --VKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 176 --~~~~G~~~v~vG~~l~~i 193 (547)
++++|| .|+.||+|+.+
T Consensus 583 ~~~Vk~Gd-~V~~G~~l~~~ 601 (648)
T PRK10255 583 KRLVEEGA-QVSAGQPILEM 601 (648)
T ss_pred eEEecCCC-EEcCCCEEEEE
Confidence 688897 89999998876
No 250
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=32.34 E-value=66 Score=32.01 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.7
Q ss_pred CeeEEEEEEcCCCCeecCCCeEEEEE
Q 008996 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 131 ~eg~i~~w~v~~Gd~V~~gd~l~evE 156 (547)
..|.|..+.+.+|+.|..|++|++|-
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 45899999999999999999999875
No 251
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=32.00 E-value=55 Score=35.42 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=17.5
Q ss_pred CeeEEEEE-------EcCCCCeecCCCeEE
Q 008996 131 QEGNIARW-------LKKEGDKVSPGEVLC 153 (547)
Q Consensus 131 ~eg~i~~w-------~v~~Gd~V~~gd~l~ 153 (547)
..|.|.+. +|++||.|++||+|.
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLI 225 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLI 225 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEE
Confidence 45666665 468889999999987
No 252
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.51 E-value=1e+02 Score=28.74 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=32.8
Q ss_pred ecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCCCc
Q 008996 146 VSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (547)
Q Consensus 146 V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~~~ 200 (547)
+++||.|..| |.+|++.-..+..|+ .+..|+++|-+..-.+++
T Consensus 87 lkkGd~ll~i-----------PvEGYvVtpIaDvG~-RvrkGd~~AAvttRkG~v 129 (161)
T COG4072 87 LKKGDELLLI-----------PVEGYVVTPIADVGN-RVRKGDPFAAVTTRKGEV 129 (161)
T ss_pred ecCCCEEEEE-----------ecCcEEEEEeecccc-hhcCCCceeEEEecccce
Confidence 4556666655 788999999999998 999999998765544443
No 253
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=29.84 E-value=58 Score=34.92 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.0
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHhhcCc
Q 008996 512 MSVTLSCDHRVIDGAIGAEWLKAFKGYIENP 542 (547)
Q Consensus 512 m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P 542 (547)
+-|++++.|-++||.-+..||+.|.+.....
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 5789999999999999999999999987653
No 254
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=29.69 E-value=93 Score=35.87 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=38.5
Q ss_pred eeEEEEEEcCCCCeecC----CCeEEEEEeCCeeEEEecCcCeEEEEE--------------------------------
Q 008996 132 EGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI-------------------------------- 175 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~----gd~l~evEtdKa~~ev~ap~~G~l~ki-------------------------------- 175 (547)
+|++... .++-|.|=. ||-++..=+| -+|.||++|+|..+
T Consensus 470 ~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 4555443 334444433 6666655443 46888888888766
Q ss_pred ---eeCCCCeeeeCCCEEEEE
Q 008996 176 ---VKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 176 ---~~~~G~~~v~vG~~l~~i 193 (547)
++++|| .|+.||+|+.+
T Consensus 546 F~~~v~~g~-~V~~G~~l~~~ 565 (610)
T TIGR01995 546 FEILVKVGD-HVKAGQLLLTF 565 (610)
T ss_pred eEEEecCcC-EEcCCCEEEEe
Confidence 788997 89999999876
No 255
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=29.30 E-value=90 Score=36.15 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=40.1
Q ss_pred eeEEEEEEcCCCCeecC----CCeEEEEEeCCeeEEEecCcCeEEEEE--------------------------------
Q 008996 132 EGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI-------------------------------- 175 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~----gd~l~evEtdKa~~ev~ap~~G~l~ki-------------------------------- 175 (547)
+|++.... ++-|.|=. ||-++..=+| -+|.||++|+|..+
T Consensus 486 ~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~g 561 (627)
T PRK09824 486 TGEVVPLE-QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKF 561 (627)
T ss_pred ceEEeeHH-HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCC
Confidence 45554433 45555544 6777755544 47889999998876
Q ss_pred ---eeCCCCeeeeCCCEEEEE
Q 008996 176 ---VKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 176 ---~~~~G~~~v~vG~~l~~i 193 (547)
++++|| .|+.||+|+.+
T Consensus 562 F~~~v~~Gd-~V~~G~~l~~~ 581 (627)
T PRK09824 562 FTAHVNVGD-KVNTGDLLIEF 581 (627)
T ss_pred ceEEecCCC-EEcCCCEEEEE
Confidence 788997 89999999876
No 256
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=29.28 E-value=59 Score=30.69 Aligned_cols=45 Identities=22% Similarity=0.478 Sum_probs=28.1
Q ss_pred eecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEEeccCCCcc
Q 008996 145 KVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIP 201 (547)
Q Consensus 145 ~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~~~~~ 201 (547)
.+++|+-|+.++. +|+..-..+.+|+ .|.-|+.||.+.....++-
T Consensus 75 ~l~~G~~L~l~~v-----------eG~~v~~i~~~G~-rV~~gd~lA~v~T~KGeVR 119 (150)
T PF09891_consen 75 LLKKGTELCLVPV-----------EGYQVYPIVDEGD-RVRKGDRLAYVTTRKGEVR 119 (150)
T ss_dssp EE-TT-B-EEEEE-----------ESSEEEESS-TSE-EE-TT-EEEEEE-TTS-EE
T ss_pred EECCCCEEEEEEe-----------cceEEEEEcccCc-EeccCcEEEEEEecCcceE
Confidence 4667777888763 4666678889997 9999999999877666554
No 257
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=29.18 E-value=64 Score=33.51 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=39.2
Q ss_pred EEEEEEcCC----CCeecCCCeEEEEEeCCeeEEEecCcCeEEE-EEeeCCCCeeeeCCCEEEEEe
Q 008996 134 NIARWLKKE----GDKVSPGEVLCEVETDKATVEMECMEEGYLA-KIVKGDGSKEIKVGEVIAITV 194 (547)
Q Consensus 134 ~i~~w~v~~----Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~-ki~~~~G~~~v~vG~~l~~i~ 194 (547)
.+..|.... |..|++||.+.-.+=. .++.+--|. |.+. ...+.+|+ .|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~-~~~~~~~~v~~g~-kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPP-GKVQLAEQLQAGS-VVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeC-CCceeccccCCCC-EEEcChhhcCcc
Confidence 445565532 7799999999999874 555554443 3331 23467897 899999998653
No 258
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=29.06 E-value=51 Score=35.18 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtd 158 (547)
++++ |++++|+.|.+|++|++||-+
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 3554 899999999999999999853
No 259
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=28.69 E-value=62 Score=35.30 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=28.0
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHhhcC
Q 008996 512 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 541 (547)
Q Consensus 512 m~ltlt~DHRviDGa~aa~FL~~lk~~LE~ 541 (547)
+-|++++.|.++||.-+..|++.|.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999998875
No 260
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=28.18 E-value=84 Score=32.21 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=16.3
Q ss_pred CCCCeecC-CCeEEEEEeCCeeEEEecCcCeEE
Q 008996 141 KEGDKVSP-GEVLCEVETDKATVEMECMEEGYL 172 (547)
Q Consensus 141 ~~Gd~V~~-gd~l~evEtdKa~~ev~ap~~G~l 172 (547)
..|+.|.+ |++|++.. .-++.+|++|++
T Consensus 227 ~~~~~~~~~G~~la~~~----~~~~~ap~~g~v 255 (272)
T cd06910 227 RGGETIPRAGTVIAHDG----GEPIRTPYDDCV 255 (272)
T ss_pred CCcceeccCCcEEEEeC----CeEEeCCCCCEE
Confidence 44566666 66666631 256666666655
No 261
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=28.12 E-value=53 Score=36.27 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=26.1
Q ss_pred CcCeEEEEEeeCCCCeeeeCCCEEEEEeccC
Q 008996 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (547)
Q Consensus 167 p~~G~l~ki~~~~G~~~v~vG~~l~~i~~~~ 197 (547)
...|.|.++..+||| .+..|++||.|..+.
T Consensus 50 MeeGnIvsW~kKeGd-kls~GDvl~EVETDK 79 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGD-KLSAGDVLLEVETDK 79 (470)
T ss_pred ccCCceeeEeeccCC-ccCCCceEEEEeccc
Confidence 467999999999998 899999999986543
No 262
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=27.67 E-value=67 Score=34.50 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 008996 135 IARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 135 i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
+..|.+++|+.|.+||+|++||-
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEEE
Confidence 46888999999999999988874
No 263
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=27.40 E-value=86 Score=33.91 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=34.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEe-------eCCCCeeeeCCCEEE
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV-------KGDGSKEIKVGEVIA 191 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~-------~~~G~~~v~vG~~l~ 191 (547)
+|+-....+.|-... +...+..--+|-|..+|+|.++. +++|| .|+.||+|.
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd-~VkkGdvLI 225 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGD-TVKKGDVLI 225 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCC-EECCCCEEE
Confidence 466666666654433 23334445678899999999985 56665 777777774
No 264
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=27.01 E-value=90 Score=33.81 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred EcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCCCCeeee
Q 008996 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIK 185 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~G~~~v~ 185 (547)
.|++||.|++||+|..=+-.+-.-...-+.+|.|....-.+.+.+++
T Consensus 208 ~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V~a~t~ye~~~~vp 254 (382)
T TIGR02876 208 VVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEVFARTWYEKTVEVP 254 (382)
T ss_pred EEccCCEEcCCCEEEEeEeCCCCceEEEccceEEEEEEEEEEEEEEe
No 265
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.62 E-value=62 Score=33.82 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.0
Q ss_pred eEEEEEEc--CCCCeecCCCeEEEEEe
Q 008996 133 GNIARWLK--KEGDKVSPGEVLCEVET 157 (547)
Q Consensus 133 g~i~~w~v--~~Gd~V~~gd~l~evEt 157 (547)
.....|++ ++|+.|++||+|++++-
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEEE
Confidence 34558888 99999999999999873
No 266
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=26.26 E-value=50 Score=33.20 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=52.8
Q ss_pred EEecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeC-----Cee----------EEEecCcCeEEEEEeeCCCCeee
Q 008996 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD-----KAT----------VEMECMEEGYLAKIVKGDGSKEI 184 (547)
Q Consensus 120 ~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtd-----Ka~----------~ev~ap~~G~l~ki~~~~G~~~v 184 (547)
.+....+||+++---+.+-.+..||.++-|+.+++|-.- |.. .-.+.-..|...+++ ++| .|
T Consensus 78 ~l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL-~~G--~V 154 (223)
T PRK11536 78 LFVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI-APG--KV 154 (223)
T ss_pred ccCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE-CCc--EE
Confidence 355678999987666777888999999999999988652 211 112345669988775 788 59
Q ss_pred eCCCEEEEE
Q 008996 185 KVGEVIAIT 193 (547)
Q Consensus 185 ~vG~~l~~i 193 (547)
.+|+.|-.+
T Consensus 155 ~~GD~v~l~ 163 (223)
T PRK11536 155 SADAPLELV 163 (223)
T ss_pred cCCCEEEEE
Confidence 999999876
No 267
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=26.19 E-value=53 Score=33.71 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=26.6
Q ss_pred eEEEecCcCeEEEEEeeCCCCeeeeCCCEEEE
Q 008996 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (547)
Q Consensus 161 ~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~ 192 (547)
.--+..++-|..-+.+++||| .|+.||+|.+
T Consensus 29 ~al~~~Df~g~~Pkm~VkeGD-~Vk~Gq~LF~ 59 (257)
T PF05896_consen 29 VALLPDDFPGMKPKMLVKEGD-RVKAGQPLFE 59 (257)
T ss_pred EEEcCcccCCCCccEEeccCC-EEeCCCeeEe
Confidence 334667888999999999998 8999999986
No 268
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=25.85 E-value=37 Score=34.22 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=26.3
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCCeeEE
Q 008996 136 ARWLKKEGDKVSPGEVLCEVETDKATVE 163 (547)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~evEtdKa~~e 163 (547)
..|++.+|..+++=|..|.||.||+.++
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccc
Confidence 4699999999999999999999999887
No 269
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=25.73 E-value=1.4e+02 Score=36.66 Aligned_cols=67 Identities=33% Similarity=0.473 Sum_probs=48.4
Q ss_pred EEecCCCCCCCCeeEEEEEE----cCCCCeecCCCeEEEEE-eCCeeEEE--ecCcCeEEEEEeeCCCCeeeeCCCEEEE
Q 008996 120 EIGMPSLSPTMQEGNIARWL----KKEGDKVSPGEVLCEVE-TDKATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (547)
Q Consensus 120 ~i~mP~lg~~~~eg~i~~w~----v~~Gd~V~~gd~l~evE-tdKa~~ev--~ap~~G~l~ki~~~~G~~~v~vG~~l~~ 192 (547)
=|.+|.|..+ .+|. +++||+|..||++.+|. |.-.+.-| +.-..|+|..| +.+|+ ..+-++|+.
T Consensus 106 g~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~--~~~~~~~~~ 176 (1017)
T PRK14698 106 GISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE--YTIEEVIAK 176 (1017)
T ss_pred CCCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC--cceeeEEEE
Confidence 3457777754 2553 68899999999999875 44344444 45558999876 67885 889999998
Q ss_pred Eec
Q 008996 193 TVE 195 (547)
Q Consensus 193 i~~ 195 (547)
+..
T Consensus 177 ~~~ 179 (1017)
T PRK14698 177 VKT 179 (1017)
T ss_pred EEc
Confidence 864
No 270
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=25.33 E-value=1.2e+02 Score=26.46 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=31.6
Q ss_pred eecCCCeEEEEEeC-CeeEEEecCcCeEEEEEeeCCCCeeeeCCCEEEEE
Q 008996 145 KVSPGEVLCEVETD-KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (547)
Q Consensus 145 ~V~~gd~l~evEtd-Ka~~ev~ap~~G~l~ki~~~~G~~~v~vG~~l~~i 193 (547)
...++..|-++..- ++.+.+ ....|.-.+.++++|| .|..||.|+..
T Consensus 14 ~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd-~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 14 ELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGD-KVKKGQLIAEA 61 (101)
T ss_pred ccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCC-EEcCCCEEEec
Confidence 34556666655533 333333 4446777788999998 89999999874
No 271
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=25.18 E-value=76 Score=39.91 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=30.6
Q ss_pred EEEcCCCCeecCCCeEEEEEe--------CCeeEEEecCcCeEE
Q 008996 137 RWLKKEGDKVSPGEVLCEVET--------DKATVEMECMEEGYL 172 (547)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~evEt--------dKa~~ev~ap~~G~l 172 (547)
..+|+.|+.|++||+|+|+.. +|+...|-|..+|.+
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 468999999999999999974 456678889988885
No 272
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=25.01 E-value=72 Score=34.98 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=29.5
Q ss_pred EEEEEEeecccccchHHHHHHHHHHHHhhcCcc
Q 008996 511 FMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPE 543 (547)
Q Consensus 511 ~m~ltlt~DHRviDGa~aa~FL~~lk~~LE~P~ 543 (547)
...|.+.|||=+.||.-|..|.+.|-+.|..+.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 367899999999999999999999999998653
No 273
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=24.62 E-value=42 Score=35.55 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=10.2
Q ss_pred EcCCCCeecCCCeEEEEE
Q 008996 139 LKKEGDKVSPGEVLCEVE 156 (547)
Q Consensus 139 ~v~~Gd~V~~gd~l~evE 156 (547)
+|++||.|++||.|+++-
T Consensus 273 ~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 273 LVREQQEVKAGQKIATMG 290 (319)
T ss_pred ccCCcCEECCCCeEEeEc
Confidence 455566666666665554
No 274
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.33 E-value=85 Score=31.29 Aligned_cols=71 Identities=15% Similarity=0.311 Sum_probs=52.3
Q ss_pred EecCCCCCCCCeeEEEEEEcCCCCeecCCCeEEEEEeC--------------CeeEE-EecCcCeEEEEEeeCCCCeeee
Q 008996 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD--------------KATVE-MECMEEGYLAKIVKGDGSKEIK 185 (547)
Q Consensus 121 i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~evEtd--------------Ka~~e-v~ap~~G~l~ki~~~~G~~~v~ 185 (547)
+.-+.+||+++--=|.+-.+..||.+.-||+|.||.-- +.... -.+-..|+..+++ ++| .|.
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL-~~G--~v~ 152 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL-EEG--KVR 152 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc-ccc--eec
Confidence 45678899987777888889999999999999999641 11111 1233457888775 777 599
Q ss_pred CCCEEEEEe
Q 008996 186 VGEVIAITV 194 (547)
Q Consensus 186 vG~~l~~i~ 194 (547)
+|++|-++.
T Consensus 153 ~gD~l~l~~ 161 (210)
T COG2258 153 AGDPLKLIP 161 (210)
T ss_pred CCCceEEec
Confidence 999998763
No 275
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=24.30 E-value=1.6e+02 Score=24.76 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=25.1
Q ss_pred CeeEEEecCcCeEE----------------EEEeeCCCCeeeeCCCEEEEEec
Q 008996 159 KATVEMECMEEGYL----------------AKIVKGDGSKEIKVGEVIAITVE 195 (547)
Q Consensus 159 Ka~~ev~ap~~G~l----------------~ki~~~~G~~~v~vG~~l~~i~~ 195 (547)
+++..+-+.++|++ .++++++|+ .|..|++|+.+..
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l~~~v~~~~~dG~-~v~~g~~i~~i~G 68 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKLGLEVEWLVKDGD-RVEPGDVILEIEG 68 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHCTEEEEESS-TT--EEETTCEEEEEEE
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhccEEEEEEeCCCC-CccCCcEEEEEEe
Confidence 44556666666665 456889997 9999999998743
No 276
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=3.6e+02 Score=22.93 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=46.4
Q ss_pred eEEEEeccceeeeeecCCCCceEEEeEEEEEEeecccccchHHHHHHHHHHHHhhc
Q 008996 485 SGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIE 540 (547)
Q Consensus 485 ~aIL~vG~i~~r~v~~~~~g~i~ir~~m~ltlt~DHRviDGa~aa~FL~~lk~~LE 540 (547)
.|++-+|++++.+-..-.++++.+.+++-+-..|=--+||-.+|-.-|..++++..
T Consensus 18 ~A~Vd~gGvkreV~l~Lv~~~v~~GdyVLVHvGfAi~~idEeeAketle~l~e~~~ 73 (82)
T COG0298 18 LAIVDVGGVKREVNLDLVGEEVKVGDYVLVHVGFAMSKIDEEEAKETLEALQEMFD 73 (82)
T ss_pred eEEEEeccEeEEEEeeeecCccccCCEEEEEeeEEEeecCHHHHHHHHHHHHHHHH
Confidence 79999999998865543445777888888888888899999999999999997764
No 277
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=22.55 E-value=91 Score=34.08 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=27.6
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHhhcC
Q 008996 512 MSVTLSCDHRVIDGAIGAEWLKAFKGYIEN 541 (547)
Q Consensus 512 m~ltlt~DHRviDGa~aa~FL~~lk~~LE~ 541 (547)
+-|++++.|.++||.-+..|++.|.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 578999999999999999999999998765
No 278
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=22.26 E-value=75 Score=34.85 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCeeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 130 ~~eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
|+-+.=+...++.||.|++||+|++|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5556667899999999999999998865
No 279
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=22.02 E-value=55 Score=26.96 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=35.3
Q ss_pred EEcCCCCeecCCCeEEEEEeCCeeEEEecCcCeEEEEEeeCC----------CCeeeeCCCEE-EEEe
Q 008996 138 WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD----------GSKEIKVGEVI-AITV 194 (547)
Q Consensus 138 w~v~~Gd~V~~gd~l~evEtdKa~~ev~ap~~G~l~ki~~~~----------G~~~v~vG~~l-~~i~ 194 (547)
|..++||.| .|.++ .+..+.+.+++..+.+|.|..-.... .+ .+++|+.+ +.+.
T Consensus 2 y~p~~GdiV-~g~V~-~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~-~l~vGd~i~~~V~ 66 (86)
T cd05789 2 YIPEVGDVV-IGRVT-EVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRS-YLDEGDLIVAEVQ 66 (86)
T ss_pred CcCCCCCEE-EEEEE-EECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHh-hCCCCCEEEEEEE
Confidence 556777777 34433 46667788889888999987543321 11 37899987 4443
No 280
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=21.82 E-value=90 Score=31.82 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.4
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEe
Q 008996 132 EGNIARWLKKEGDKVSPGEVLCEVET 157 (547)
Q Consensus 132 eg~i~~w~v~~Gd~V~~gd~l~evEt 157 (547)
.+.+..|.+++|+.|..||++++||-
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G 73 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEG 73 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEE
Confidence 35677899999999999999999984
No 281
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=21.48 E-value=97 Score=26.17 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=26.7
Q ss_pred EEEEeecccccchHHHHHHHHHHHHhhcC
Q 008996 513 SVTLSCDHRVIDGAIGAEWLKAFKGYIEN 541 (547)
Q Consensus 513 ~ltlt~DHRviDGa~aa~FL~~lk~~LE~ 541 (547)
..++.+|-|+.++.+..++++.+++++++
T Consensus 78 ~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 78 EATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp EEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 57889999999999999999999999874
Done!