BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009000
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1
SV=3
Length = 876
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 30/226 (13%)
Query: 339 CHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDV----PDVLD 394
CH +VVG+D EW P +V G + + S++Q+A + VF+ D++ L++
Sbjct: 392 CH----QVVGVDVEWTPVFVAGGR-PRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQAFS 446
Query: 395 SCLTRILQSPGILKLGYNFQCDIKQLAHS-----YGELECFKHYEMLL--DIQNVFKEPK 447
+ ++L P I KLGY D+++L S + E + ++LL V P
Sbjct: 447 RLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAHVEKQILGGMDLLLVHRQMRVASVPA 506
Query: 448 G---------GLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
GLS L +++LG L+KT++ SNW++RPL + Q+ YAA DA LL++ H
Sbjct: 507 PAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEV--HQ 564
Query: 499 RSCSQPTDVSEGHDKIEWKSYIVSHMDNPKKSKKRPTIKKETESGA 544
C +P D S H + P ++K P ++K + A
Sbjct: 565 ALCREPARFHLSEDLA--GSRRPRHRERP-GARKPPGLQKASAPAA 607
>sp|P34607|MUT7_CAEEL Probable exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1
SV=1
Length = 910
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 21/209 (10%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKL--AEDVPDVLDSCLTRILQSP 404
VG D EWKP+ + +K++I+Q+ V++ D ++L A D +R+
Sbjct: 432 VGFDSEWKPSNLTAVHDSKIAIIQLFFKNCVWLVDCVELEKANMADDWWQKFASRLFGDS 491
Query: 405 GILKLGYNFQCDIKQLA-----HSYGELECFKHY-------EMLLDIQ-NVFKEPKGG-- 449
+ +G++ + D+ +A S ++E K+ E + DI + + PK
Sbjct: 492 PVKVVGFDMRNDLDAMATIPALKSSMKIEDTKNAFDLKRLAENVCDIDMEILELPKKTFK 551
Query: 450 LSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDVSE 509
L+ L +LG L+KT + SNW+ RPL + Q+ YAALDAVV+++ F + S + +
Sbjct: 552 LADLTHYLLGLELDKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFKKILSIVEEKNKDA 611
Query: 510 GHDKIEWKSYIVSHMDNPKKSKKRPTIKK 538
+KI +S +++ PKK K + +K
Sbjct: 612 DIEKIVRESNVMA----PKKDKGHKSYRK 636
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 328 VDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAE 387
VD D + + + ++ D EWKP + N+VS++Q+A+ + V++ D++ +++
Sbjct: 440 VDSKDKFYAMLSDLCRQSMIAFDSEWKPTFGGA---NEVSLIQLATWDDVYMIDVM-VSQ 495
Query: 388 DVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAH---SYGELECFKHYEMLLDIQ---- 440
P + + +LKL + DI S+ + + +LD+Q
Sbjct: 496 LEPLDWAALAKNVFNRDDVLKLSFAPSTDISMFQKALPSFNVMYSSQSTSAILDLQLLWR 555
Query: 441 -----NVFKEP------KGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAV 489
+ F+ P L+ L LG L+K+ + SNW QRPL + QL YAALDA
Sbjct: 556 HVERFDSFRFPYHEESVNQNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAF 615
Query: 490 VLLQIFHHV 498
LL+I+ +
Sbjct: 616 CLLEIYDAI 624
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
PE=1 SV=1
Length = 288
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 343 GCKVVGIDCEWKPNYVKGCKMNKVSIMQIASD----EMVFIFDLIKLAEDVPDVLDSCLT 398
G VG+D EW+P++ KG KV+ +QI D +++ IF +P L
Sbjct: 126 GIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFH-----SGIP----QSLQ 176
Query: 399 RILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQN--VFKEPKGGLSGLAEK 456
+++ ++K+G D +L H YG K E L D+ N + + K GL+ L E
Sbjct: 177 HLIEDSTLVKVGIGIDGDSVKLFHDYG--VSIKDVEDLSDLANQKIGGDKKWGLASLTET 234
Query: 457 ILGAGLNKTRRN--SNWEQRPLSQNQLEYAALDAVVLLQIF 495
++ L K R NWE PLS+ QL+YAA DA ++
Sbjct: 235 LVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLY 275
>sp|Q9VIF1|MUT7_DROME Probable exonuclease mut-7 homolog OS=Drosophila melanogaster
GN=CG9247 PE=1 SV=1
Length = 625
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 319 ELVVEDIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVF 378
+L E +I V++ D + + H++ V+ +D EW + C N++ ++QIA+ V+
Sbjct: 404 DLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSV---CGDNQLCVLQIATGHNVY 460
Query: 379 IFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYG---ELECFKHYEM 435
+ D + + I + I K+G++ D+ L S L+ HY
Sbjct: 461 LIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSLPLQLRLQMPHHY-- 518
Query: 436 LLDIQNVFKEPK-----------------GGLSGLAEKILGAGLNKTRRNSNWEQRPLSQ 478
LD++N++ E K L+ L+ LG LNK+ + SNW RPL +
Sbjct: 519 -LDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPLRR 577
Query: 479 NQLEYAALDAVVLLQIFH 496
Q+ YAA+DA L+ I++
Sbjct: 578 EQILYAAIDARCLMLIYN 595
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 324 DIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLI 383
D +V +GL KAI +E + +D E +++ ++QI +E ++ DL
Sbjct: 2 DFEYVTGEEGLKKAIKRLENSPYLYLDTE--------TTGDRIRLVQIGDEENTYVIDLY 53
Query: 384 KLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF 443
++ + P L +++ GI+ G+N + D+K L + YG M+ +
Sbjct: 54 EIQDIEP------LRKLINERGIV--GHNLKFDLKYL-YRYGIFPSATFDTMIASY--LL 102
Query: 444 KEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQ 503
+ L+ + +LG ++K+ + S+W LS QL+YAA D +VL ++F +R
Sbjct: 103 GYERHSLNHIVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLN 162
Query: 504 PTDVSEGHDKIEWKSYIVSHMDNP 527
D G + ++ ++ + + +P
Sbjct: 163 ELDAERGEELLKTRTAKIFDLKSP 186
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 300 LKTRE---PEAGFVHS---------RFLHLKELVVEDIIWVDEVDGLHKAICHIEGCKVV 347
L +RE PE +HS R L K + V D+++ L ++ +E V+
Sbjct: 48 LGSRELPPPEDDQLHSSAPRSSWKERILKAKVVTVSQEAEWDQIEPLLRS--ELEDFPVL 105
Query: 348 GIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDV--PDVLDSCLTRILQSPG 405
GIDCEW ++G K + +S++Q+AS + + L++L + + L L IL
Sbjct: 106 GIDCEWV--NLEG-KASPLSLLQMASPSGLCV--LVRLPKLICGGKTLPRTLLDILADGT 160
Query: 406 ILKLGYNFQCDIKQLAHSYGEL--ECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLN 463
ILK+G D +L YG + C + + +N L LAE +L L+
Sbjct: 161 ILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLD 220
Query: 464 KTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
K+ R SNW+ L+++Q+ YAA DA + + +F H+
Sbjct: 221 KSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 15/159 (9%)
Query: 346 VVGIDCEWKPNYVKGCKMNKVSIMQI-ASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSP 404
VVG D EW P Y G K ++V+++Q+ S+ ++F + ++ V L +L++
Sbjct: 72 VVGFDMEWPPIYKPG-KRSRVAVIQLCVSESKCYLFHISSMS-----VFPQGLKMLLENK 125
Query: 405 GILKLGYNFQCDIKQLAHSYG-ELECFKHYEMLLDIQN--VFKEPKGGLSGLAEKILGAG 461
I K G + D +L + +LE F L D+ N + L+GL + +LG
Sbjct: 126 SIKKAGVGIEGDQWKLLRDFDVKLESFVE---LTDVANEKLKCAETWSLNGLVKHVLGKQ 182
Query: 462 L--NKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
L +K+ R SNW PL+++Q YAA DA L I+ +
Sbjct: 183 LLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>sp|P34603|YO63_CAEEL Uncharacterized protein ZK1098.3 OS=Caenorhabditis elegans
GN=ZK1098.3 PE=4 SV=2
Length = 784
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 31/208 (14%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAE--DVPDVLDSCLTRILQSP 404
+G D E+KP ++ ++++I+Q+ + ++ + + + DV + +S
Sbjct: 447 IGYDSEFKPYHLIDVSTSRLAIIQLFFKDKAWLINCVAIDNLASRDDVWIRLYKGLFESN 506
Query: 405 GILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNV-------------------FKE 445
+G++ + DI+ + + FK + +IQNV
Sbjct: 507 KFSIVGFDIRQDIEAMFTVPSINKNFK----IENIQNVICVKSLAENVNALSMDILNLST 562
Query: 446 PKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPT 505
LS LA+ ++G ++K+ + NW+ RPL +NQ+ YA +DAV + ++F +
Sbjct: 563 KTSKLSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVFQKI------V 616
Query: 506 DVSEGHDKIEWKSYIVSHMDNPKKSKKR 533
+V H+ K + SHM KK K R
Sbjct: 617 EVVRKHELDAEKLLVESHMITVKKEKVR 644
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 17/160 (10%)
Query: 346 VVGIDCEWKPNYVKGCKMNKVSIMQI-ASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSP 404
VVG D EW P Y +G K+ KV+++Q+ S+ ++F + ++ V L +L++
Sbjct: 78 VVGFDMEWPPLYNRG-KLGKVALIQLCVSESKCYLFHVSSMS-----VFPQGLKMLLENK 131
Query: 405 GILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVFKEPK----GGLSGLAEKILGA 460
+ K G + D +L + K++ L D+ N K+ K L+ L + +LG
Sbjct: 132 AVKKAGVGIEGDQWKLLRDFDIK--LKNFVELTDVAN--KKLKCTETWSLNSLVKHLLGK 187
Query: 461 GL--NKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
L +K+ R SNW + PL+++Q YAA DA I+ ++
Sbjct: 188 QLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNL 227
>sp|B4K934|WRNXO_DROMO Werner Syndrome-like exonuclease OS=Drosophila mojavensis GN=WRNexo
PE=3 SV=1
Length = 329
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 327 WVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKL 385
WVD+ H I + D EW ++ G K S++QI DE +++ L L
Sbjct: 123 WVDQ--QTHTEIVPM------AFDMEWPFSFQTGP--GKSSVIQICVDERCCYVYQLSNL 172
Query: 386 AEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NV 442
+ + + L ++ P + G N + D ++LA + E+ E +D+ N
Sbjct: 173 KK-----IPAALVALINHPKVRLHGVNIKADFRKLARDFPEVAAEPLIEKCVDLGVWCNE 227
Query: 443 FKEPKG--GLSGLAEKILGAGLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
E G L LA I ++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 228 VCETGGRWSLERLANFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREI 287
Query: 499 RSCSQ 503
Q
Sbjct: 288 EQREQ 292
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 12/167 (7%)
Query: 368 IMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGEL 427
++Q+ + V + D + P++ + + +L P ++K+ + + DI+ +G +
Sbjct: 52 VVQLGGADCVAVIDTL-----APELDLAPVGELLADPAVIKVFHACRQDIEIFLLRFGSI 106
Query: 428 ECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALD 487
+ + F + + G L + G ++K R S+W +RPLSQ Q++YAA D
Sbjct: 107 PQPMFDTQVAAMVAGFGD-QVGYDTLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAAD 165
Query: 488 AVVLLQIFHHVRSCSQPTDVSEGHDKIEWKSYIVSHMDNPKKSKKRP 534
L ++ +R D E ++ W S ++ +++P + P
Sbjct: 166 VTHLRGVYETLR------DRLEKEGRLAWVSEEMAVLNDPATYRTDP 206
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 346 VVGIDCEWKPNYVKGCKMNKVSIMQI-ASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSP 404
V+G D EW P Y KG K KV+++Q+ S++ ++F + +A L R+L+
Sbjct: 72 VLGFDIEWPPVYTKG-KTGKVALIQVCVSEKKCYLFHISPMAG-----FPKGLKRLLEDE 125
Query: 405 GILKLGYNFQCDIKQLAHSYG-ELECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGL- 462
+ K+G + D +L Y +L+ F + + + KE K +GL + + L
Sbjct: 126 SVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKLRCKE-KWTFNGLIKHLFKEQLY 184
Query: 463 -NKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDVSEGHDKIEWKSYIV 521
K+ R SNW+ L+++Q YAA DA L I+ + EG D E S+ V
Sbjct: 185 KRKSYRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKL----------EGMDAHESDSFRV 234
Query: 522 SH 523
Sbjct: 235 GR 236
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
Query: 365 KVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 424
K+ ++Q + + + D + L PD+ S +L +P I+KL ++ D++ AH Y
Sbjct: 60 KLGLIQAYDGKTLALIDPVAL----PDL--SAFWSLLDNPNIIKLVHSCSEDLEVFAH-Y 112
Query: 425 GELECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYA 484
G+ + ++ + G + L E LG ++K ++W +RPL++ QL YA
Sbjct: 113 GQRQPTPLFDSQIAASLCGMGHGLGYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYA 172
Query: 485 ALDAVVLLQIFHHVRSCSQPTDVSEGHDKIEW 516
A D + L Q++ Q D + D++ W
Sbjct: 173 ANDVLYLYQLY------PQLADKLKAQDRLGW 198
>sp|B3LWP6|WRNXO_DROAN Werner Syndrome-like exonuclease OS=Drosophila ananassae GN=WRNexo
PE=3 SV=2
Length = 355
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++QI DE +I+ L L + L S L ++ P
Sbjct: 161 MAFDMEWPFSFQTGP--GKSSVIQICVDEKCCYIYQLTNLKK-----LPSALVALINHPK 213
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++L + E+ E +D+ NV + G L LA I
Sbjct: 214 VRLHGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNVICQTGGRWSLERLANFICRK 273
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 274 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 313
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 326 IWVDEVDGLHKAICHIEGCKVVGIDCE---WKPNYVKGCKMNKVSIMQIASDEMVFIFDL 382
IWVD L + ++ K + +D E ++ Y C +MQI++ E ++ D
Sbjct: 214 IWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVC------LMQISTRERDYLVDT 267
Query: 383 IKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNV 442
+KL E++ L + +P I+K+ + DI L G + L D +
Sbjct: 268 LKLRENL-----HILNEVFTNPSIVKVFHGAFMDIIWLQRDLG-----LYVVGLFDTYHA 317
Query: 443 FKE---PKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVR 499
K P+ L+ L E +K + ++W RPLS+ YA D LL I+ +R
Sbjct: 318 SKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLR 377
Query: 500 S 500
+
Sbjct: 378 N 378
>sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease OS=Drosophila grimshawi GN=WRNexo
PE=3 SV=1
Length = 331
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++QI DE +++ L KL + + + L ++ P
Sbjct: 137 MAFDMEWPFSFQTGP--GKSSVIQICVDERCCYVYQLSKL-----NKIPAALAALINHPK 189
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++L + E+ E +D+ N E G L LA I
Sbjct: 190 VRLHGVNIKADFRKLERDFPEMSAEPLIEKCVDLGVWCNQVCETGGRWSLERLANFIAKK 249
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 250 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREI 289
>sp|B4N9D3|WRNXO_DROWI Werner Syndrome-like exonuclease OS=Drosophila willistoni GN=WRNexo
PE=3 SV=2
Length = 356
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++Q+ DE +++ L KL + L + L +L P
Sbjct: 162 MAFDMEWPFSFQTGP--GKSSVIQVCVDERCCYVYQLSKLKK-----LPAALVALLNHPK 214
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++L + E+ E +D+ N E G L LA I
Sbjct: 215 VRLHGVNIKADFRKLQRDFPEVSADPLIEKCVDLGVWCNEICETGGRWSLERLANFIAKK 274
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 275 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 314
>sp|B4G5C9|WRNXO_DROPE Werner Syndrome-like exonuclease OS=Drosophila persimilis GN=WRNexo
PE=3 SV=2
Length = 355
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++QI DE +++ L L + L + L ++ P
Sbjct: 161 MAFDMEWPFSFQTGP--GKSSVIQICVDEKCCYVYQLTNLKK-----LPAALVALINHPK 213
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++L + E+ E +D+ N E G L LA I
Sbjct: 214 VRLHGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKK 273
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 274 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 313
>sp|Q299L3|WRNXO_DROPS Werner Syndrome-like exonuclease OS=Drosophila pseudoobscura
pseudoobscura GN=WRNexo PE=3 SV=2
Length = 356
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++QI DE +++ L L + L + L ++ P
Sbjct: 162 MAFDMEWPFSFQTGP--GKSSVIQICVDEKCCYVYQLTNLKK-----LPAALVALINHPK 214
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++L + E+ E +D+ N E G L LA I
Sbjct: 215 VRLHGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKK 274
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 275 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDL 314
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 365 KVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 424
K+ ++Q+ E V + D + + + P V +L +P +LK+ ++ D+ +
Sbjct: 67 KLGLIQLYDGEHVSLIDPLAITDFSPFV------ALLANPKVLKILHSCSEDLLVFLQEF 120
Query: 425 GELECFKHYEMLLDIQNVFK----EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQ 480
+L ++D Q + + GL+ LA++ L ++K +NW +RPLS Q
Sbjct: 121 DQLP-----RPMIDTQIMARFLGLGTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQ 175
Query: 481 LEYAALDAVVLLQIFH 496
L+YAA D LL ++H
Sbjct: 176 LQYAAGDVWYLLPLYH 191
>sp|B4I298|WRNXO_DROSE Werner Syndrome-like exonuclease OS=Drosophila sechellia GN=WRNexo
PE=3 SV=2
Length = 354
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++QI DE +I+ L + + L + L ++ P
Sbjct: 160 MAFDMEWPFSFQTGP--GKSSVIQICVDEKCCYIYQLTNVKK-----LPAALVALINHPK 212
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++LA + E+ E +D+ N E G L L I
Sbjct: 213 VRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKK 272
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 273 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|B4QUF6|WRNXO_DROSI Werner Syndrome-like exonuclease OS=Drosophila simulans GN=WRNexo
PE=3 SV=1
Length = 354
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++QI DE +I+ L + + L + L ++ P
Sbjct: 160 MAFDMEWPFSFQTGP--GKSSVIQICVDEKCCYIYQLTNVKK-----LPAALVALINHPK 212
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++LA + E+ E +D+ N E G L L I
Sbjct: 213 VRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKK 272
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 273 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|B4PLB3|WRNXO_DROYA Werner Syndrome-like exonuclease OS=Drosophila yakuba GN=WRNexo
PE=3 SV=1
Length = 354
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K +++QI DE +I+ L L + L + L ++ P
Sbjct: 160 MAFDMEWPFSFQTGP--GKSAVIQICVDEKCCYIYQLTNLKK-----LPAVLVALINHPK 212
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++LA + E+ E +D+ N E G L L I
Sbjct: 213 VRLHGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKK 272
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 273 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 368 IMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGEL 427
++Q+A + V + D + D+ + L +L P ++K+ + + D++ + +G L
Sbjct: 52 LVQLAGQDEVVVVDTLAPGIDL-----APLGVLLDDPEVVKVFHAARQDLEIFLYLFGHL 106
Query: 428 ECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALD 487
+ + F + + G L + GA ++K R S+W RPLS+ Q+ YAA D
Sbjct: 107 PAALFDTQVAAMVAGFGD-QVGYDNLVASLTGAHIDKAHRFSDWSARPLSEAQIAYAAAD 165
Query: 488 AVVLLQIFHHVRSCSQPTDVSEGHDKIEWKSYIVSHMDNPKKSKKRP 534
L ++ + + E +++W + ++ + +P + P
Sbjct: 166 VTHLRTVYQLL------LERLEREGRLDWVASDLAVLSDPATFRPDP 206
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 365 KVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 424
++ ++Q+ E + + D + + + P L IL+ P I K + D++ + +
Sbjct: 40 QLGLIQLFDGEHLALIDPLGITDWSP------LKAILRDPSITKFLHAGSEDLEVFLNVF 93
Query: 425 GELECFKHYEMLLDIQNVF----KEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQ 480
GEL + L+D Q + + G + + E+ G L+K+ ++W RPL++ Q
Sbjct: 94 GELP-----QPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQ 148
Query: 481 LEYAALDAVVLLQI 494
EYAA D LL I
Sbjct: 149 CEYAAADVWYLLPI 162
>sp|Q9VE86|WRNXO_DROME Werner Syndrome-like exonuclease OS=Drosophila melanogaster
GN=WRNexo PE=1 SV=2
Length = 353
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K +++QI DE +I+ L + + L + L ++ P
Sbjct: 159 MAFDMEWPFSFQTGP--GKSAVIQICVDEKCCYIYQLTNVKK-----LPAALVALINHPK 211
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++LA + E+ E +D+ N E G L L I
Sbjct: 212 VRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKK 271
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 272 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 311
>sp|B4M401|WRNXO_DROVI Werner Syndrome-like exonuclease OS=Drosophila virilis GN=WRNexo
PE=3 SV=2
Length = 330
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K S++QI +E +++ L KL + + L +L
Sbjct: 136 LAFDMEWPFSFQTGP--GKSSVIQICVEERCCYVYQLSKLKR-----IPAALVALLNHSK 188
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++L + E+ E +D+ N E G L LA I
Sbjct: 189 VRLHGVNIKADFRKLERDFPEVAAEPLIEKCIDLGVWCNEVCETGGRWSLERLANFIAKK 248
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 249 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDI 288
>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R431 PE=4 SV=1
Length = 399
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 28/179 (15%)
Query: 345 KVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSP 404
+++G+D E + G K K+SI+Q+++ + I + ++ + L L ++
Sbjct: 135 EIIGLDTE---TLISG-KSEKISIIQLSTSKHNIIIQVNQM-----NTLPQNLNKVFFDE 185
Query: 405 GILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVFKE----------PKG--GLSG 452
I+K+G D K+L + + K LD+ ++FK+ PK GL
Sbjct: 186 SIIKVGVAIDIDAKKLLQYFPTINQIKK---TLDLSDLFKQTNFTKHISINPKESIGLKI 242
Query: 453 LAEKILGAGL-NKTR---RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDV 507
LA +L + NK + SNW L+ +Q++YA D+ + L I++ ++ + DV
Sbjct: 243 LAAHVLDLYIENKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLMIYNELQLMTNNLDV 301
>sp|Q8VEG4|EXD2_MOUSE Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus
GN=Exd2 PE=2 SV=1
Length = 496
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 392 VLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGEL--ECFKHYEMLLDIQNVFKEPKGG 449
L L IL ILK+G D +L YG + C + + N
Sbjct: 22 TLPRTLLDILADGAILKVGVGCSEDANKLLQDYGLIVRGCLDLRYLAMKQGNNILCNGLS 81
Query: 450 LSGLAEKILGAGLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV--RSCSQPT 505
L LAE IL L+K+ R SNW+ L+++Q+ YAA DA + + +F H+ S+ +
Sbjct: 82 LKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHLLGYPFSRDS 141
Query: 506 DVSEGHDKIEWKSYI---VSHMDNPKKSK 531
E D+I W+ + + +D P +SK
Sbjct: 142 YEEESTDQINWQKALERCRNMVDIPFRSK 170
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 368 IMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGEL 427
++Q+AS + + D + D+ D ++ + +LK+ + + DI+ + H G
Sbjct: 41 VVQMASPDEAVVVDALAEGIDLKPFFD-----LMSNERVLKVFHAARQDIEIVWHQAG-- 93
Query: 428 ECFKHYEMLLDIQNVFKEPKGGLS----GLAEKILGAGLNKTRRNSNWEQRPLSQNQLEY 483
H + D Q G S L E++ G +KT R ++W +RPL+++QLEY
Sbjct: 94 -IIPHP--IFDTQVAAMVLGYGDSIAYDALVERVNGHRPDKTHRFTDWSRRPLTKDQLEY 150
Query: 484 AALDAVVLLQIF 495
A D L +F
Sbjct: 151 AVADVTHLRDVF 162
>sp|B3NZ68|WRNXO_DROER Werner Syndrome-like exonuclease OS=Drosophila erecta GN=WRNexo
PE=3 SV=1
Length = 354
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 347 VGIDCEWKPNYVKGCKMNKVSIMQIASDEMV-FIFDLIKLAEDVPDVLDSCLTRILQSPG 405
+ D EW ++ G K +++QI DE +I+ L L + L + L ++
Sbjct: 160 MAFDMEWPFSFQTGP--GKSAVIQICVDEKCCYIYQLTNLKK-----LPAVLVALINHSK 212
Query: 406 ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ---NVFKEPKG--GLSGLAEKILGA 460
+ G N + D ++LA + E+ E +D+ N E G L L I
Sbjct: 213 VRLHGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGVWCNEVCETGGRWSLERLTNFIAKK 272
Query: 461 GLNKTR--RNSNWEQRPLSQNQLEYAALDAVVLLQIFHHV 498
++K++ R S W PL +NQL YAA+D + I+ +
Sbjct: 273 AMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREL 312
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 365 KVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 424
++ ++Q+ E V + D + + E P +LQ I K + D++ +++
Sbjct: 36 QLGLIQLYDGENVALIDPLTITEWAP------FQALLQDQNITKFLHAGSEDLEVFQNAF 89
Query: 425 GEL-ECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEY 483
G + + F ++L V G + L E G L+K+ ++W RPL++ Q +Y
Sbjct: 90 GMMPDPFIDTQVLASF--VGHPLSCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDY 147
Query: 484 AALDAVVLLQIFHHV 498
AA D LL I H +
Sbjct: 148 AAADVWYLLPIAHKL 162
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 449 GLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDVS 508
G L K+ G ++K+ R ++W +RPLS QL+YA D L I+ + + T
Sbjct: 116 GYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVL--AKRLTHTK 173
Query: 509 EGHDKIEWKSYIVSHMDNPKKSKKRP 534
H W + ++ + +P+ RP
Sbjct: 174 RAH----WVAEEMAVLQDPETYAMRP 195
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 368 IMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGEL 427
++QIA D+ D + D+ + D ++ + ILK+ + D++ + H G++
Sbjct: 44 LIQIADDKEAAAIDPLAPGLDMTPLTDL----LVNNEDILKVFHAGGQDLEIILHHTGKM 99
Query: 428 ECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALD 487
F ++ + + + G S L E+ L L+K R ++W RPL + QL+YA D
Sbjct: 100 P-FPLFDTQIAAMALGVGEQVGYSNLVERYLSIKLDKGARFTDWSHRPLDRRQLDYAIAD 158
Query: 488 AVVLLQIF 495
L +F
Sbjct: 159 VTHLATLF 166
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 343 GCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQ 402
GC+ +D E ++ + +MQI++ FI D ++L D+ +L+ LT
Sbjct: 306 GCQEFAVDLE---HHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDM-YILNESLT---- 357
Query: 403 SPGILKLGYNFQCDIKQLAHSYG--ELECFKHYEM--LLDIQNVFKEPKGGLSGLAEKIL 458
P I+K+ + DI+ L +G + F ++ LL++ + L L
Sbjct: 358 DPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLA------RHSLDHLLRLYC 411
Query: 459 GAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVR 499
G NK + ++W RPL + L YA D LL I+ +R
Sbjct: 412 GVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMR 452
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 449 GLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIF 495
G L + LG L+K R ++W +RPL + Q++YA D L+QIF
Sbjct: 120 GYGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIF 166
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 449 GLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDVS 508
G L + G ++K R S+W RPLS+ Q+ YAA D L ++ +R+
Sbjct: 125 GYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRA----RLTR 180
Query: 509 EGHDKIEWKSYIVSHMDNPKKSKKRP 534
EG +++W + + + +P + P
Sbjct: 181 EG--RLDWVAEEAAVLADPATYRTEP 204
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 326 IWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKL 385
IWV L + ++ K + +D E ++ V +MQI++ E +I D ++L
Sbjct: 219 IWVSTESQLSDMLKELQNSKEIAVDLE---HHDYRSFRGFVCLMQISNREKDWIVDTLEL 275
Query: 386 AEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYG--ELECFKHYEMLLDIQNVF 443
L + +P I+K+ + DI L +G + F Y V
Sbjct: 276 R-----EELEALNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYAT----KVL 326
Query: 444 KEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRS 500
GL+ L +K +K + ++W RPL + L+YA D LL I+ H+R+
Sbjct: 327 GFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRN 383
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 449 GLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTD 506
G L +I A L+K+ R ++W +RPLS Q YA D L +I+ ++ + TD
Sbjct: 121 GYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELARTD 178
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 368 IMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYG-- 425
+MQI++ FI D ++L D+ +L+ LT P I+K+ + DI+ L +G
Sbjct: 328 LMQISTRTEDFIIDTLELRSDM-YILNESLT----DPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 426 ELECFKHYEM--LLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEY 483
+ F ++ LL++ + L L + NK + ++W RPL + L Y
Sbjct: 383 VVNMFDTHQAARLLNLG------RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSY 436
Query: 484 AALDAVVLLQIFHHVR 499
A D LL I+ +R
Sbjct: 437 ARDDTHYLLYIYDKMR 452
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 449 GLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIF 495
G S L +++L L K S+W QRPL++ Q+ YAA D L Q++
Sbjct: 122 GYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVY 168
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 29/178 (16%)
Query: 328 VDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKM-NKVSIMQIASDEMVFIFDLIKLA 386
+ + L A+ + V ID E +++ ++ ++Q+AS + + D I
Sbjct: 27 ITQTTDLEIALATLRNSDFVTIDTE----FIRETTFWPQLCLIQLASPDTTVLIDPISQD 82
Query: 387 EDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVFKEP 446
D+ D ++ + I+K+ + + DI+ + H G + L D Q
Sbjct: 83 IDLKPFFD-----LMVNKKIVKVFHAARQDIETIYHLGGVIPS-----PLFDTQIA---- 128
Query: 447 KGGLSGLAEKI---------LGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIF 495
G + G + I G L+K+ R ++W RPLS+ QL YA D L ++
Sbjct: 129 -GSICGFGDSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVY 185
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 453 LAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQI 494
L +++ G L K S+W +RPLS +QLEYAA D L I
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAI 160
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 332 DGLHKAICHIEGCKVVGIDCEWKPNYVKG-CKMNKVSIMQIASDEMVFIFDLIKLAEDVP 390
DGL + V +D E +V+ ++ ++Q+ E + + D + + P
Sbjct: 10 DGLSEVCSQARRMPQVALDTE----FVRTRTYYPQLGLIQLFDGERLSLIDPLSITVWQP 65
Query: 391 DVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELEC-FKHYEMLLDIQNVFKEPKGG 449
+L P + K + D++ +++G L F ++L + + K G
Sbjct: 66 ------FCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQIL--VAFLGKPLSYG 117
Query: 450 LSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQI 494
+ L + L+K+ ++W RPLS+ Q +YAA D LL +
Sbjct: 118 FAALVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPM 162
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 323 EDIIWVDEVDGLHKAICHIEGCKVVGIDCE--WKPNYVKGCKMNKVSIMQIA-SDEMVFI 379
E+II E L K + VG+D E W+ Y ++ ++QIA SDE +
Sbjct: 4 ENIISTTE--DLKKIVNKALKLDAVGLDTEFVWERTYYP-----QLGLIQIALSDEECYA 56
Query: 380 FDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDI 439
D + + + P L +L +K+ ++ D+ ++ + G
Sbjct: 57 IDPLSIKDLSP------LGELLADRNTIKILHDAPQDLIIMSQATGATP----------- 99
Query: 440 QNVFKEP-KGGLSG---------LAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAV 489
QN+F G +G L + L L+K+ +NW +RPL++ QL Y+ D
Sbjct: 100 QNIFDTRLAAGFAGSISTISLLQLVSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVR 159
Query: 490 VL 491
L
Sbjct: 160 YL 161
>sp|O13945|PPK9_SCHPO Protein kinase domain-containing protein ppk9
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ppk9 PE=4 SV=1
Length = 532
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 173 TQLKAQNEHRFDTAKTVIEQYIFAMIDSQSYMTAVSLLEHFSIRQSGESFLLKMIQNKEF 232
T A E D+ T + ++ Q + V L +HF Q+ E LKM+ N E
Sbjct: 3 TPSSASAESEKDSGNTYVGPWLLGRTLGQGNLAKVKLGKHF---QTNEKVALKMVYNDEL 59
Query: 233 KAAEKWATFMGKPILLKRL 251
+ + W + +L++L
Sbjct: 60 EDKDTWKRLQREVTILRQL 78
>sp|Q8CDF7|EXD1_MOUSE Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus
GN=Exd1 PE=2 SV=1
Length = 570
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 337 AICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSC 396
A+ HI+ V+ + E C+ K+ +Q+A++ V++FD+ L ++
Sbjct: 148 AMLHIKKQSVLSVAAEG----ANVCRHGKLCWLQVATNSRVYLFDIFLLGS---RAFNNG 200
Query: 397 LTRILQSPGILKLGYNFQCDIKQLAHSYG 425
L IL+ ILK+ ++ + L+H YG
Sbjct: 201 LQMILEDKRILKVIHDCRWLSDCLSHQYG 229
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 388 DVPDVLD-----SCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNV 442
D P L+ + + IL++P I K+G N + D A EL+ + MLL +
Sbjct: 395 DAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSY-TL 453
Query: 443 FKEPKGGLSGLAEKILG---------AGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQ 493
+ + LA++ LG AG K++ N Q PL Q EYAA DA V ++
Sbjct: 454 NSTGRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFN--QIPLEQ-ATEYAAEDADVTMK 510
Query: 494 I 494
+
Sbjct: 511 L 511
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 453 LAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDVSEGHD 512
L + + L+K+ R ++W +RPL Q++YA D L I+ ++ + T
Sbjct: 120 LVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKET------G 173
Query: 513 KIEWKSYIVSHMDNPKKSKKRP 534
++ W S ++ + +P ++ P
Sbjct: 174 RLGWLSDEMALLTSPATYEQHP 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,112,651
Number of Sequences: 539616
Number of extensions: 8281810
Number of successful extensions: 18442
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 18398
Number of HSP's gapped (non-prelim): 53
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)