Query 009000
Match_columns 547
No_of_seqs 212 out of 1216
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 99.9 1.2E-23 4.1E-28 225.0 19.7 198 320-534 105-305 (428)
2 2e6m_A Werner syndrome ATP-dep 99.9 1.6E-21 5.6E-26 187.8 19.1 173 323-506 15-199 (208)
3 1vk0_A Hypothetical protein; h 99.9 5.4E-22 1.9E-26 193.2 14.1 164 327-500 23-205 (206)
4 2hbj_A Exosome complex exonucl 99.8 1.5E-19 5E-24 192.5 20.9 172 322-506 84-258 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.8 1.5E-19 5.1E-24 189.8 19.4 169 324-506 2-174 (375)
6 3cym_A Uncharacterized protein 99.7 9.6E-17 3.3E-21 172.3 15.5 170 324-506 17-191 (440)
7 2kfn_A Klenow fragment of DNA 99.6 1.1E-14 3.8E-19 161.8 20.2 173 323-504 5-195 (605)
8 3pv8_A DNA polymerase I; DNA p 99.5 8.8E-14 3E-18 154.2 10.9 148 345-506 30-185 (592)
9 1x9m_A DNA polymerase; DNA plo 99.1 2.9E-10 1E-14 128.4 9.9 148 346-507 1-188 (698)
10 1bgx_T TAQ DNA polymerase; DNA 98.8 4.6E-09 1.6E-13 120.7 6.1 172 260-503 244-421 (832)
11 4dfk_A DNA polymerase I, therm 98.5 2.6E-07 9E-12 101.5 8.8 116 345-504 11-131 (540)
12 3v9w_A Ribonuclease T; DEDD nu 97.7 0.00017 5.8E-09 70.1 11.0 159 327-506 20-225 (235)
13 1wlj_A Interferon stimulated g 96.3 0.026 8.8E-07 53.0 10.9 91 393-505 73-172 (189)
14 2p1j_A POLIII, DNA polymerase 96.2 0.062 2.1E-06 50.1 13.1 90 393-504 82-178 (186)
15 2f96_A Ribonuclease T; RNAse, 94.8 0.27 9.1E-06 47.1 12.3 84 405-504 126-215 (224)
16 2gui_A DNA polymerase III epsi 93.9 1.4 4.8E-05 40.8 14.8 95 393-504 85-187 (194)
17 2qxf_A Exodeoxyribonuclease I; 86.2 4.8 0.00016 43.4 12.0 92 393-501 84-200 (482)
18 3u3y_B Three prime repair exon 85.5 1.5 5E-05 45.0 7.1 94 392-502 103-215 (314)
19 1y97_A Three prime repair exon 85.4 1.1 3.8E-05 42.9 6.0 93 392-502 98-210 (238)
20 3mxm_B Three prime repair exon 83.4 1.8 6.3E-05 42.0 6.6 94 392-502 103-215 (242)
21 1qht_A Protein (DNA polymerase 70.4 41 0.0014 38.2 13.7 154 343-499 134-327 (775)
22 1w0h_A 3'-5' exonuclease ERI1; 63.9 14 0.00047 34.1 6.8 94 394-504 89-197 (204)
23 1s5j_A DNA polymerase I; repli 58.6 1.6E+02 0.0056 33.7 15.7 100 392-495 259-386 (847)
24 1zbh_A 3'-5' exonuclease ERI1; 57.5 48 0.0016 32.9 9.9 94 394-504 157-265 (299)
25 3iay_A DNA polymerase delta ca 54.6 85 0.0029 36.5 12.6 63 436-498 395-465 (919)
26 1rxw_A Flap structure-specific 49.5 6.7 0.00023 40.0 2.1 90 206-298 211-312 (336)
27 3g5g_A Regulatory protein; tra 48.7 14 0.00047 30.6 3.6 47 122-168 41-87 (99)
28 1zbu_A ERI-1 homolog, 3'-5' ex 46.6 77 0.0026 32.4 9.6 94 394-504 207-315 (349)
29 2k9q_A Uncharacterized protein 43.4 21 0.00072 27.4 3.7 46 123-168 16-61 (77)
30 3omt_A Uncharacterized protein 42.3 19 0.00065 27.3 3.3 46 123-168 22-67 (73)
31 2igi_A Oligoribonuclease; RNAs 40.9 84 0.0029 28.1 8.0 89 394-502 85-177 (180)
32 3kz3_A Repressor protein CI; f 38.6 34 0.0012 26.5 4.3 51 122-172 25-75 (80)
33 3qq6_A HTH-type transcriptiona 38.5 27 0.00091 27.2 3.6 59 107-168 11-70 (78)
34 1y7y_A C.AHDI; helix-turn-heli 38.2 37 0.0012 25.3 4.3 47 122-168 26-72 (74)
35 2p58_C Putative type III secre 38.1 86 0.0029 27.2 6.8 43 194-247 29-71 (116)
36 2kpj_A SOS-response transcript 37.9 34 0.0012 27.4 4.3 47 122-168 22-68 (94)
37 2xi8_A Putative transcription 37.8 22 0.00076 25.8 2.9 46 123-168 15-60 (66)
38 3s8q_A R-M controller protein; 36.8 34 0.0012 26.4 4.0 47 122-168 24-70 (82)
39 2ofy_A Putative XRE-family tra 36.8 32 0.0011 26.8 3.9 56 113-169 19-75 (86)
40 3bs3_A Putative DNA-binding pr 36.7 30 0.001 26.0 3.6 46 123-168 24-69 (76)
41 2r1j_L Repressor protein C2; p 35.3 35 0.0012 24.9 3.7 46 123-168 19-64 (68)
42 1x57_A Endothelial differentia 34.7 42 0.0014 26.5 4.3 47 122-168 26-72 (91)
43 2ewt_A BLDD, putative DNA-bind 33.9 40 0.0014 24.9 3.9 47 122-168 21-69 (71)
44 2gbz_A Oligoribonuclease; ORN, 32.6 89 0.0031 28.6 6.8 90 394-503 89-182 (194)
45 2a6c_A Helix-turn-helix motif; 31.9 49 0.0017 25.8 4.3 62 107-168 15-78 (83)
46 2b5a_A C.BCLI; helix-turn-heli 31.5 41 0.0014 25.3 3.6 47 122-168 23-69 (77)
47 3u3w_A Transcriptional activat 31.0 1.1E+02 0.0039 28.7 7.5 84 122-213 18-101 (293)
48 2wiu_B HTH-type transcriptiona 30.3 31 0.0011 26.8 2.8 48 122-169 25-72 (88)
49 1lmb_3 Protein (lambda repress 30.2 63 0.0022 25.3 4.7 49 122-170 30-78 (92)
50 2uwj_G Type III export protein 30.0 88 0.003 27.1 5.6 43 194-247 28-70 (115)
51 3b7h_A Prophage LP1 protein 11 29.8 44 0.0015 25.2 3.5 47 122-168 20-67 (78)
52 1adr_A P22 C2 repressor; trans 29.4 48 0.0016 24.8 3.7 46 123-168 19-64 (76)
53 3t76_A VANU, transcriptional r 29.3 39 0.0013 27.5 3.3 55 111-168 28-82 (88)
54 3f6w_A XRE-family like protein 28.0 50 0.0017 25.4 3.7 50 122-171 27-76 (83)
55 1r69_A Repressor protein CI; g 28.0 45 0.0015 24.4 3.2 45 123-168 15-59 (69)
56 3mlf_A Transcriptional regulat 26.1 57 0.0019 27.3 3.9 55 112-168 28-82 (111)
57 3op9_A PLI0006 protein; struct 26.1 52 0.0018 27.1 3.6 55 113-169 15-69 (114)
58 3vk0_A NHTF, transcriptional r 25.7 59 0.002 27.0 3.9 62 107-168 18-80 (114)
59 3k6g_A Telomeric repeat-bindin 23.8 59 0.002 28.0 3.4 38 151-192 14-51 (111)
60 3ivp_A Putative transposon-rel 23.5 65 0.0022 27.1 3.8 55 112-168 17-71 (126)
61 2jvl_A TRMBF1; coactivator, he 22.7 94 0.0032 25.7 4.6 58 111-168 35-95 (107)
62 1zug_A Phage 434 CRO protein; 22.7 61 0.0021 23.8 3.1 45 123-168 17-61 (71)
63 2xvc_A ESCRT-III, SSO0910; cel 22.5 52 0.0018 25.5 2.5 38 219-256 12-54 (59)
64 3trb_A Virulence-associated pr 21.7 71 0.0024 26.7 3.6 47 122-168 27-73 (104)
65 2bnm_A Epoxidase; oxidoreducta 21.5 83 0.0028 28.4 4.3 47 122-168 23-70 (198)
66 3lfp_A CSP231I C protein; tran 20.8 52 0.0018 26.5 2.5 46 123-168 15-64 (98)
67 2f6m_B Vacuolar protein sortin 20.5 83 0.0028 27.3 3.7 66 183-251 37-106 (109)
68 1xi4_A Clathrin heavy chain; a 20.5 4.2E+02 0.014 32.8 10.9 162 132-294 559-751 (1630)
69 2izo_A FEN1, flap structure-sp 20.2 22 0.00075 36.3 0.0 91 207-297 210-315 (346)
70 2o4w_A Lysozyme; protein foldi 20.0 85 0.0029 28.8 4.0 46 211-258 91-148 (171)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.91 E-value=1.2e-23 Score=224.97 Aligned_cols=198 Identities=19% Similarity=0.219 Sum_probs=166.3
Q ss_pred cCCcCeEEEcCHHHHHHHHHHhhCCCeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchHHHHHHHH
Q 009000 320 LVVEDIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTR 399 (547)
Q Consensus 320 ~~~~~y~~Idt~eeL~~lle~L~~a~vIgfDtE~~~l~~~~~~~~~VsLlQLAt~~~a~~Idl~~l~~~~p~~Ll~~Lk~ 399 (547)
.....|.+|++.+++..+++.+..++.+|||+||.+.. +....++++||++++++++||+..... . ...|++
T Consensus 105 ~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~---~~~~~l~lIQLa~~~~~~lidpl~l~~----~-l~~L~~ 176 (428)
T 3saf_A 105 IEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYR---SFLGLTCLMQISTRTEDFIIDTLELRS----D-MYILNE 176 (428)
T ss_dssp GGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTT---CSSCEEEEEEEECSSCEEEEETTTTGG----G-GGGGHH
T ss_pred CCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCC---CCCCeEEEEEEEeCCcEEEEEeccchh----h-HHHHHH
Confidence 44568999999999999999999999999999998752 235689999999988899999876421 1 246899
Q ss_pred hhcCCCceEEEechHHHHHHHHHHhCCcccccccchhhhHHHhh---cCCCCCHHHHHHHHhCCCCCCCcccccCCCCCC
Q 009000 400 ILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---KEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPL 476 (547)
Q Consensus 400 LLed~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLAl---~~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpL 476 (547)
+|+|+++.|||||+|+|+++|.+.+|+.. .++||||++. +..++||+.|+++|||..++|+++.++|++|||
T Consensus 177 lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~-----~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpL 251 (428)
T 3saf_A 177 SLTDPAIVKVFHGADSDIEWLQKDFGLYV-----VNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPL 251 (428)
T ss_dssp HHTCTTSEEEESSCHHHHHHHHHHHCCCC-----SSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSC
T ss_pred HHcCCCceEEEeehHHHHHHHHHHcCCCc-----CceeechhHHHHhCCCCCCHHHHHHHHcCCCCCccccccccccCCC
Confidence 99999999999999999999976699853 5689999993 444689999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccchhHHHHHhhccCcccccCCC
Q 009000 477 SQNQLEYAALDAVVLLQIFHHVRSCSQPTDVSEGHDKIEWKSYIVSHMDNPKKSKKRP 534 (547)
Q Consensus 477 t~~Qi~YAAeDA~vlLrL~~~L~~rLee~~~~~~~~~~~w~s~~~~~~~~~~k~~~~~ 534 (547)
+++|+.|||.||+++++||+.|.++|++.+. ....|...+..+++..+..+..+
T Consensus 252 s~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~ 305 (428)
T 3saf_A 252 PEEMLSYARDDTHYLLYIYDKMRLEMWERGN----GQPVQLQVVWQRSRDICLKKFIK 305 (428)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHTT----SCSHHHHHHHHHHHHHTTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----ccccHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999987553 22457777777776666555443
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.88 E-value=1.6e-21 Score=187.78 Aligned_cols=173 Identities=26% Similarity=0.431 Sum_probs=140.0
Q ss_pred cCeEEEcCHHHHH----HHHHHhhCCCeEEEEeeeecCCccCCcCCceeEEEEEe-CCeEEEEEcCcccCCCchHHHHHH
Q 009000 323 EDIIWVDEVDGLH----KAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIAS-DEMVFIFDLIKLAEDVPDVLDSCL 397 (547)
Q Consensus 323 ~~y~~Idt~eeL~----~lle~L~~a~vIgfDtE~~~l~~~~~~~~~VsLlQLAt-~~~a~~Idl~~l~~~~p~~Ll~~L 397 (547)
.++.+|++.+++. .+++.+...+++|||+||.+.+.. +....++++|+++ ++.++|+|+.+.. ..+ ..|
T Consensus 15 g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~~~~~~~i~~~~~~-~~~----~~L 88 (208)
T 2e6m_A 15 GSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVSESKCYLFHISSMS-VFP----QGL 88 (208)
T ss_dssp SEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECSSSEEEEECGGGCS-SCC----HHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecCCCeEEEEECcccc-cch----HHH
Confidence 4689999999988 555677778899999999875211 1245789999998 4789999887542 122 468
Q ss_pred HHhhcCCCceEEEechHHHHHHHHHHhCCcccccccchhhh-HHHhh---c-CCCCCHHHHHHHHhCCCCCC--Cccccc
Q 009000 398 TRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLD-IQNVF---K-EPKGGLSGLAEKILGAGLNK--TRRNSN 470 (547)
Q Consensus 398 k~LLed~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfD-tmLAl---~-~~~~gLd~LAer~Lg~~L~K--~e~~Sd 470 (547)
+++|+|+++.|||||+|+|++.|.+.+|+.. .++|| +|++. + ..++||++|++++||..+.| ..+.++
T Consensus 89 ~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~-----~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~ 163 (208)
T 2e6m_A 89 KMLLENKSIKKAGVGIEGDQWKLLRDFDVKL-----ESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSN 163 (208)
T ss_dssp HHHHTCTTSEEEESSHHHHHHHHHHHHCCCC-----CSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSC
T ss_pred HHHhcCCCceEEEEeeHHHHHHHHHHCCCCC-----CCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCC
Confidence 9999999999999999999999998789843 44899 89993 3 46899999999999998855 457899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009000 471 WEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTD 506 (547)
Q Consensus 471 W~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee~~ 506 (547)
|..|||+++|+.|||.||+++++||+.|.++|++.+
T Consensus 164 W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~ 199 (208)
T 2e6m_A 164 WSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQ 199 (208)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999997743
No 3
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.87 E-value=5.4e-22 Score=193.17 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=130.9
Q ss_pred EEcCHHHHHHHHHHh------hCCCeEEEEeeeecCCc----cCCcC-CceeEEEEEeCCeEEEEEcCcccCCCchHHHH
Q 009000 327 WVDEVDGLHKAICHI------EGCKVVGIDCEWKPNYV----KGCKM-NKVSIMQIASDEMVFIFDLIKLAEDVPDVLDS 395 (547)
Q Consensus 327 ~Idt~eeL~~lle~L------~~a~vIgfDtE~~~l~~----~~~~~-~~VsLlQLAt~~~a~~Idl~~l~~~~p~~Ll~ 395 (547)
.|.+.+++..+++.+ ....++|||+||.+.+. .+..+ ++++++|+|+++.+++|++. ...|..+ .
T Consensus 23 ~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~---~~~~~~L-~ 98 (206)
T 1vk0_A 23 DVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLP---KPFHDNL-K 98 (206)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECC---SSCCGGG-H
T ss_pred EEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEecc---ccCCccH-H
Confidence 345555566666554 55679999999997531 01122 58999999999999999982 2234444 3
Q ss_pred HHHHhhcCCCceEEEechHHHHHHHHHHhCCcccccccchhhhHH-Hhh---c---CCCCCHHHHHHHHhCCCC-CCCcc
Q 009000 396 CLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQ-NVF---K---EPKGGLSGLAEKILGAGL-NKTRR 467 (547)
Q Consensus 396 ~Lk~LLed~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtm-LAl---~---~~~~gLd~LAer~Lg~~L-~K~e~ 467 (547)
.|+.+|+|+++.||||+++.|+..|.+.||+.. .++||++ ++. . ..++||+.|++++||.++ +|..+
T Consensus 99 ~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~-----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~ 173 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQIEEDLDLLRENHGLVI-----RNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSI 173 (206)
T ss_dssp HHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCC-----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHhcCCCceEEEeccHHHHHHHHHhcCCCc-----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcc
Confidence 588999999999999999999999998899843 7789997 552 2 247899999999999999 44568
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009000 468 NSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRS 500 (547)
Q Consensus 468 ~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~ 500 (547)
.|||++ ||+++|+.|||.||+++++||+.|..
T Consensus 174 ~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 174 EAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999 99999999999999999999999975
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.83 E-value=1.5e-19 Score=192.47 Aligned_cols=172 Identities=24% Similarity=0.315 Sum_probs=146.5
Q ss_pred CcCeEEEcCHHHHHHHHHHhhCCCeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchHHHHHHHHhh
Q 009000 322 VEDIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRIL 401 (547)
Q Consensus 322 ~~~y~~Idt~eeL~~lle~L~~a~vIgfDtE~~~l~~~~~~~~~VsLlQLAt~~~a~~Idl~~l~~~~p~~Ll~~Lk~LL 401 (547)
...+.+|++.+++..+++.+..++.+|+|+||.+.. +....++++|+++++.+|++|..... . ....|+++|
T Consensus 84 ~~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~---~~~~~l~liQla~~~~~ylid~l~l~-~----~l~~L~~lL 155 (410)
T 2hbj_A 84 DSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYR---SYYGIVCLMQISTRERDYLVDTLKLR-E----NLHILNEVF 155 (410)
T ss_dssp GCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSS---SSSCEEEEEEEECSSCEEEEETTTTT-T----TGGGGHHHH
T ss_pred CCCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCc---CCCCcEEEEEEEECCcEEEEechhhh-h----hHHHHHHHH
Confidence 346889999999999999988889999999998752 12567999999998889999864321 1 123589999
Q ss_pred cCCCceEEEechHHHHHHHHHHhCCcccccccchhhhHHHhh---cCCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCH
Q 009000 402 QSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---KEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQ 478 (547)
Q Consensus 402 ed~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLAl---~~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~ 478 (547)
+|+++.|||||+|+|++.|.+.+|+.. .++||||++. +..++||+.|+++|||..++|+.+.++|..|||++
T Consensus 156 ~d~~i~KV~h~~k~Dl~~L~~~~Gi~~-----~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~ 230 (410)
T 2hbj_A 156 TNPSIVKVFHGAFMDIIWLQRDLGLYV-----VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSK 230 (410)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHHCCCC-----SSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCH
T ss_pred cCCCceEEEEehHHHHHHHHHHcCCCc-----CCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccccccCCCCCCCCH
Confidence 999999999999999999987789854 4489999993 43379999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009000 479 NQLEYAALDAVVLLQIFHHVRSCSQPTD 506 (547)
Q Consensus 479 ~Qi~YAAeDA~vlLrL~~~L~~rLee~~ 506 (547)
+|+.|||.||+++++||+.|.++|++.+
T Consensus 231 ~q~~YAa~Da~~ll~L~~~L~~~L~~~g 258 (410)
T 2hbj_A 231 PMTAAARADTHFLLNIYDQLRNKLIESN 258 (410)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999997744
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.82 E-value=1.5e-19 Score=189.76 Aligned_cols=169 Identities=23% Similarity=0.333 Sum_probs=144.7
Q ss_pred CeEEEcCHHHHHHHHHHhhCCCeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchHHHHHHHHhhcC
Q 009000 324 DIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQS 403 (547)
Q Consensus 324 ~y~~Idt~eeL~~lle~L~~a~vIgfDtE~~~l~~~~~~~~~VsLlQLAt~~~a~~Idl~~l~~~~p~~Ll~~Lk~LLed 403 (547)
+|.+|++.+++..+++.+...+.+|+|+||.+.. +....++++|+++++.+|++|.... .. ...|+++|+|
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~---~~~~~l~liqla~~~~~~lid~~~l--~~----~~~L~~ll~d 72 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTR---TYYPQLGLIQLFDGEHLALIDPLGI--TD----WSPLKAILRD 72 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCS---CSSCEEEEEEEECSSCEEEECGGGC--SC----CHHHHHHHHC
T ss_pred CeEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCC---cCCCceEEEEEecCCcEEEEeCCCC--CC----hHHHHHHHcC
Confidence 4678889899999999988889999999998762 2245799999998778898885432 11 2468999999
Q ss_pred CCceEEEechHHHHHHHHHHhCCcccccccchhhhHHHhh---c-CCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCHH
Q 009000 404 PGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---K-EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQN 479 (547)
Q Consensus 404 ~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLAl---~-~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~~ 479 (547)
+++.|||||+|+|++.|.+.+|+.. .++||||++. + ..++||+.|+++|||..++|+.+.++|..|||+++
T Consensus 73 ~~i~Kv~h~~k~Dl~~L~~~~Gi~~-----~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~ 147 (375)
T 1yt3_A 73 PSITKFLHAGSEDLEVFLNVFGELP-----QPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTER 147 (375)
T ss_dssp TTSEEEESSCHHHHHHHHHHHSSCC-----SSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHH
T ss_pred CCceEEEeeHHHHHHHHHHHcCCCC-----CcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHH
Confidence 9999999999999999987689843 4789999993 3 44799999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009000 480 QLEYAALDAVVLLQIFHHVRSCSQPTD 506 (547)
Q Consensus 480 Qi~YAAeDA~vlLrL~~~L~~rLee~~ 506 (547)
|+.|||.||+++++||+.|.++|++.+
T Consensus 148 q~~YAa~Da~~l~~L~~~L~~~L~~~g 174 (375)
T 1yt3_A 148 QCEYAAADVWYLLPITAKLMVETEASG 174 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999997743
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.70 E-value=9.6e-17 Score=172.26 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=138.9
Q ss_pred CeEEEcCHHHHHHHHHHhhCC-CeEEEEeeeecCCccCCcCCceeEEEEEe-CCeEEEEEcCcccCCCchHHHHHHHHhh
Q 009000 324 DIIWVDEVDGLHKAICHIEGC-KVVGIDCEWKPNYVKGCKMNKVSIMQIAS-DEMVFIFDLIKLAEDVPDVLDSCLTRIL 401 (547)
Q Consensus 324 ~y~~Idt~eeL~~lle~L~~a-~vIgfDtE~~~l~~~~~~~~~VsLlQLAt-~~~a~~Idl~~l~~~~p~~Ll~~Lk~LL 401 (547)
.+.+|++.+++..+++.+..+ +.++||+||.+.. .+...++++|+++ ++.+||||........ .. ...|+++|
T Consensus 17 ~~~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~---~~~~~l~liQla~~~~~~~lid~l~~~~~~-~~-l~~L~~lL 91 (440)
T 3cym_A 17 VPNVIDTLPAFRDYCSELASSHGSLAADAERASGF---RYGHEDWLVQFKRDGAGIGLLDPQALAAAG-AD-WNDFNRAV 91 (440)
T ss_dssp CCCEECSHHHHHHHHHHHHSCEEEEEEEEEECTTT---SSSCCEEEEEEEEETTEEEEECHHHHHHTT-CC-HHHHHHHH
T ss_pred CCEeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCC---CCCCCEEEEEEEECCCcEEEEEcCCccccc-cC-HHHHHHHH
Confidence 346788889999999988877 8899999998752 1245799999998 4568998763210000 00 35789999
Q ss_pred cCCCceEEEechHHHHHHHHHHhCCcccccccchhhhHHHh---hcCCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCH
Q 009000 402 QSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNV---FKEPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQ 478 (547)
Q Consensus 402 ed~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLA---l~~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~ 478 (547)
+|+ .||+||+|.|+..|. .+|+.. .++|||+++ ++..++|++.|+++|+|..++|+.+.++|..|||++
T Consensus 92 ~d~--~KV~h~~k~Dl~~L~-~~gi~~-----~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~ 163 (440)
T 3cym_A 92 GDA--VWILHDSLQDLPGFD-ELGMEP-----QRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPR 163 (440)
T ss_dssp TTC--EEEESSHHHHHHHHH-HHTCCC-----CEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCH
T ss_pred CCC--CEEEEcCHHHHHHHH-HcCCcC-----CceehHHHHHHHhCCCCCCHHHHHHHHhCCCcccccccCCCcCCCCCH
Confidence 997 799999999999997 489843 578999999 342389999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009000 479 NQLEYAALDAVVLLQIFHHVRSCSQPTD 506 (547)
Q Consensus 479 ~Qi~YAAeDA~vlLrL~~~L~~rLee~~ 506 (547)
+|..|||.||+++++||+.|.++|++.+
T Consensus 164 ~q~~YAa~Da~~Ll~L~~~L~~~L~~~g 191 (440)
T 3cym_A 164 DWRNYAALDVELLIELETKMRAELKRQG 191 (440)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999997744
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.62 E-value=1.1e-14 Score=161.81 Aligned_cols=173 Identities=20% Similarity=0.183 Sum_probs=137.5
Q ss_pred cCeEEEcCHHHHHHHHHHhhCCCeEEEEeeeecCCccCCcCCceeEEEEEe-CCeEEEEEcCccc----CCC-chHHHHH
Q 009000 323 EDIIWVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIAS-DEMVFIFDLIKLA----EDV-PDVLDSC 396 (547)
Q Consensus 323 ~~y~~Idt~eeL~~lle~L~~a~vIgfDtE~~~l~~~~~~~~~VsLlQLAt-~~~a~~Idl~~l~----~~~-p~~Ll~~ 396 (547)
.+|.+|++.+++..|++.+..++.++||+|+++... ....+..+|++. ++.++|+|+.+.. ... .+++...
T Consensus 5 ~~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~---~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 5 DNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDN---ISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALEL 81 (605)
T ss_dssp SSSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCT---TTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHH
T ss_pred hheEEecCHHHHHHHHHhcccCCeEEEEEecCCCCc---ccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHH
Confidence 468888888999999998887888999999998721 134566677776 7788888776521 111 1334578
Q ss_pred HHHhhcCCCceEEEechHHHHHHHHHHhCCcccccccchhhhHHHhh---c--CCCCCHHHHHHHHhCCCCC-------C
Q 009000 397 LTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF---K--EPKGGLSGLAEKILGAGLN-------K 464 (547)
Q Consensus 397 Lk~LLed~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLAl---~--~~~~gLd~LAer~Lg~~L~-------K 464 (547)
|+++|+++++.||+||+|+|++.|.+ +|+.. .+.+||||++. + ..+++|+.|+++|||.... |
T Consensus 82 L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi~l----~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gK 156 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNLKYDRGILAN-YGIEL----RGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK 156 (605)
T ss_dssp HHHHHTCTTSCEEESSHHHHHHHHHT-TTCCC----CCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCS
T ss_pred HHHHHcCCCCeEEEECcHHHHHHHHH-CCCCC----CCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCC
Confidence 99999999999999999999999998 78843 25689999992 3 3479999999999987653 4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009000 465 TRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 504 (547)
Q Consensus 465 ~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee 504 (547)
+...++|..+|+ +++.+||+.||+++++|++.|.++|++
T Consensus 157 g~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 157 GKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp STTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455568988888 678999999999999999999999876
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.47 E-value=8.8e-14 Score=154.25 Aligned_cols=148 Identities=8% Similarity=-0.023 Sum_probs=119.1
Q ss_pred CeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchHHHHHHHHhhcCCCceEEEechHHHHHHHHHHh
Q 009000 345 KVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 424 (547)
Q Consensus 345 ~vIgfDtE~~~l~~~~~~~~~VsLlQLAt~~~a~~Idl~~l~~~~p~~Ll~~Lk~LLed~~I~KVGhnlK~Dl~vLa~~~ 424 (547)
...++|+|+.... +....+..++++.++++||+|+.+. .....|+++|+|+++.||+||+|+|+++|.+ +
T Consensus 30 ~~~aldtE~~~~~---~~~a~Lvgisla~~~~a~yIp~~~~------~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~~-~ 99 (592)
T 3pv8_A 30 DKAALVVEVVEEN---YHDAPIVGIAVVNEHGRFFLRPETA------LADPQFVAWLGDETKKKSMFDSKRAAVALKW-K 99 (592)
T ss_dssp SEEEEEEECCSSS---CTTCCCCEEEEEETTEEEEECHHHH------TTCHHHHHHHTCTTSEEEESSHHHHHHHHHH-T
T ss_pred cCcEEEEEEcCCc---cCcccEEEEEEEcCCceEEEccchh------hHHHHHHHHHhCCCCeEEEechHHHHHHHHH-c
Confidence 4568999987652 2244566778888878999987531 1225799999999999999999999999988 8
Q ss_pred CCcccccccchhhhHHHh---hc--CCCCCHHHHHHHHhCCCCCCCcccccCCC---CCCCHHHHHHHHHHHHHHHHHHH
Q 009000 425 GELECFKHYEMLLDIQNV---FK--EPKGGLSGLAEKILGAGLNKTRRNSNWEQ---RPLSQNQLEYAALDAVVLLQIFH 496 (547)
Q Consensus 425 GIl~~~~~~~~vfDtmLA---l~--~~~~gLd~LAer~Lg~~L~K~e~~SdW~~---rpLt~~Qi~YAAeDA~vlLrL~~ 496 (547)
|+.. .+++||||++ ++ .++|+|++|+++|||..+++.++..+|.. .+.++.+.+|||.||+++++|++
T Consensus 100 Gi~l----~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~ 175 (592)
T 3pv8_A 100 GIEL----CGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELER 175 (592)
T ss_dssp TCCC----CCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 9843 2678999999 33 45899999999999999888777667753 45557789999999999999999
Q ss_pred HHHhccCCCC
Q 009000 497 HVRSCSQPTD 506 (547)
Q Consensus 497 ~L~~rLee~~ 506 (547)
.|.++|++.+
T Consensus 176 ~L~~~L~e~~ 185 (592)
T 3pv8_A 176 PFLDELRRNE 185 (592)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhcch
Confidence 9999997744
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.05 E-value=2.9e-10 Score=128.37 Aligned_cols=148 Identities=15% Similarity=0.068 Sum_probs=110.8
Q ss_pred eEEEEeeeecCCccCCcCCceeEEEEEe--CCeEEEEEcCcccCCCchHHHHHHHHhhcCCCceEEEech-HHHHHHHHH
Q 009000 346 VVGIDCEWKPNYVKGCKMNKVSIMQIAS--DEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNF-QCDIKQLAH 422 (547)
Q Consensus 346 vIgfDtE~~~l~~~~~~~~~VsLlQLAt--~~~a~~Idl~~l~~~~p~~Ll~~Lk~LLed~~I~KVGhnl-K~Dl~vLa~ 422 (547)
+++||+|++++.. ...+++++|+.. .+..+.+|... .+.....|+++|+ +++.||+||+ |+|+++|.+
T Consensus 1 ~vv~D~ETtGl~~---~~d~i~~iqi~~~~~~~~~~~~p~~-----i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~ 71 (698)
T 1x9m_A 1 MIVSDIEANALLE---SVTKFHCGVIYDYSTAEYVSYRPSD-----FGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTK 71 (698)
T ss_dssp CEEEEEEESSCGG---GCCCEEEEEEEETTTTEEEEECGGG-----HHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHH
T ss_pred CEEEEcCCCCcCC---CCCEEEEEEEEecCCCcEEEEChHH-----HHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHH
Confidence 4799999998842 245788999987 45777776431 1224578999999 8899999998 999999988
Q ss_pred Hh------CCcccccccchhhhHHHhh---c--CCCCCHHHHHHHHh-------CCCC-----C-----------CCcc-
Q 009000 423 SY------GELECFKHYEMLLDIQNVF---K--EPKGGLSGLAEKIL-------GAGL-----N-----------KTRR- 467 (547)
Q Consensus 423 ~~------GIl~~~~~~~~vfDtmLAl---~--~~~~gLd~LAer~L-------g~~L-----~-----------K~e~- 467 (547)
.+ |+... .+.++|||++. + ..+++|++|+++|| |..+ + ++..
T Consensus 72 ~~~~~~~~Gi~l~---~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~ 148 (698)
T 1x9m_A 72 LAKLQLNREFHLP---RENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEY 148 (698)
T ss_dssp HHHHHHCCCCCCC---GGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhhhcccCCccCC---CCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccc
Confidence 43 87321 15689999992 3 45899999999997 4322 1 2211
Q ss_pred -c-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 009000 468 -N-SNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTDV 507 (547)
Q Consensus 468 -~-SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee~~~ 507 (547)
. .+|.. +++.+.+||+.||.++++|++.|.++|++.+.
T Consensus 149 ~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 149 VDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp CTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred cccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 27865 55888999999999999999999999988654
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.76 E-value=4.6e-09 Score=120.66 Aligned_cols=172 Identities=14% Similarity=0.027 Sum_probs=126.4
Q ss_pred HHHHhhcchhHHHHHHHHhhccCCHHHHHHHHHHcCCcccccccCcccCCcccccccccccCCcCeEEEcCHHHHHHHHH
Q 009000 260 AEAKTKGDKRLLEYLVYLAMEAGYSEKVDELCERYSLEGFLKTREPEAGFVHSRFLHLKELVVEDIIWVDEVDGLHKAIC 339 (547)
Q Consensus 260 a~~~~~~D~~l~~~lv~L~~~~~d~~~L~~l~~ryef~sll~el~~~~~~~~~~~~~l~~~~~~~y~~Idt~eeL~~lle 339 (547)
.++++.+|+++...+. ...+||.+++.++|++|||++|++++... .. + + . ..|..|++
T Consensus 244 ~L~~i~~d~~~~~~~~--~~~~~d~~~l~~~~~~~~f~~~~~~~~~~--~~-----~-~-~--~~~~~~~~--------- 301 (832)
T 1bgx_T 244 DLAKVRTDLPLEVDFA--KRREPDRERLRAFLERLEFGSLLHEFGLL--ES-----P-K-A--LEEAPWPP--------- 301 (832)
T ss_dssp GSSCCCSCCCCCCCCC--CCCCCCHHHHHHHHTTTTCCSTTCCSCCC--CC-----C-S-C--CEEECSSC---------
T ss_pred HHHhhccCCCCCCChh--HcCCccHHHHHHHHHHcCCHHHHHhhccc--cC-----C-C-c--CceeEeec---------
Confidence 5678888888765544 77889999999999999999999988321 00 0 0 0 12444443
Q ss_pred HhhCCCeEEEEeeeecCCccCCcCCceeE-EEEEe-CCeEEEEEcCcccCCCchHHHHHHHHhhcCCCceEEEechHHHH
Q 009000 340 HIEGCKVVGIDCEWKPNYVKGCKMNKVSI-MQIAS-DEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDI 417 (547)
Q Consensus 340 ~L~~a~vIgfDtE~~~l~~~~~~~~~VsL-lQLAt-~~~a~~Idl~~l~~~~p~~Ll~~Lk~LLed~~I~KVGhnlK~Dl 417 (547)
..+..+++|+|+++ .+ ...+ ++++. ++.++|+|+ + + ..|+++|+++++ |+|+|+
T Consensus 302 --~~~~~va~d~et~~-~~------~~~l~vg~a~~~g~a~yvp~-~------~---~~Lk~lLed~~i-----n~K~d~ 357 (832)
T 1bgx_T 302 --PEGAFVGFVLSRKE-PM------WADLLALAAARGGRVHRAPE-P------Y---KALRDLKEARGL-----LAKDLS 357 (832)
T ss_dssp --CTTCCBEEECSSSC-TT------TCCCCEEECBSSSEEECCSC-H------H---HHHHHCSSBCBT-----THHHHH
T ss_pred --cCCceEEEEEecCC-cc------cCceeEEEEEcCCCEEEEEC-C------H---HHHHHHHhCCCC-----ChHHHH
Confidence 23467999999765 21 1223 55776 678888877 3 1 468999999987 999999
Q ss_pred HHHHHHhCCcccccccchhhhHHHh---hc-CCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHH
Q 009000 418 KQLAHSYGELECFKHYEMLLDIQNV---FK-EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQ 493 (547)
Q Consensus 418 ~vLa~~~GIl~~~~~~~~vfDtmLA---l~-~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLr 493 (547)
++|.+ +|+.. ..++|||++ ++ . +|+|++|+++| |. +|. + + || .||+++++
T Consensus 358 ~~L~~-~Gi~~-----~~~~Dt~laayLl~p~-~~~l~~l~~~~-gk---------~~~-----~-~--ya-~da~~~~~ 411 (832)
T 1bgx_T 358 VLALR-EGLGL-----PPGDDPMLLAYLLDPS-NTTPEGVARRY-GG---------EWT-----E-E--AG-ERAALSER 411 (832)
T ss_dssp HHHHH-HTCCC-----CBCCCHHHHHHHHCTT-CCSTTHHHHHH-SC---------CCC-----S-S--HH-HHHHHHHH
T ss_pred HHHHH-cCCcc-----CcccCHHHHHHHcCCC-CCCHHHHHHHh-CC---------Cch-----H-H--HH-HHHHHHHH
Confidence 99998 89843 367999999 34 4 89999999999 32 121 1 1 87 79999999
Q ss_pred HHHHHHhccC
Q 009000 494 IFHHVRSCSQ 503 (547)
Q Consensus 494 L~~~L~~rLe 503 (547)
|++.|.++|+
T Consensus 412 l~~~l~~~L~ 421 (832)
T 1bgx_T 412 LFANLWGRLE 421 (832)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 11
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.46 E-value=2.6e-07 Score=101.51 Aligned_cols=116 Identities=12% Similarity=-0.017 Sum_probs=90.5
Q ss_pred CeEEEEeeeecCCccCCcCCceeEEEEEeCCeEEEEEcCcccCCCchHHHHHHHHhhcCCCceEEEechHHHHHHHHHHh
Q 009000 345 KVVGIDCEWKPNYVKGCKMNKVSIMQIASDEMVFIFDLIKLAEDVPDVLDSCLTRILQSPGILKLGYNFQCDIKQLAHSY 424 (547)
Q Consensus 345 ~vIgfDtE~~~l~~~~~~~~~VsLlQLAt~~~a~~Idl~~l~~~~p~~Ll~~Lk~LLed~~I~KVGhnlK~Dl~vLa~~~ 424 (547)
+.+++|+|+.... .....+.+++++.++++|+++ .....|+++|+| +.||+||+|+|++ + +
T Consensus 11 ~~valDtE~~~~~---~~~a~Lvgi~la~~~~a~~i~----------~~l~~l~~~l~d--~~kV~hn~K~Dl~---~-~ 71 (540)
T 4dfk_A 11 EGAFVGFVLSRKE---PMWADLLALAAARGGRVHRAP----------EPYKALRDLKEA--RGLLAKDLSVLAL---R-E 71 (540)
T ss_dssp TTCEEEEEESSSC---TTTCCEEEEEEEETTEEEECS----------SHHHHHTTCSSB--CSTTHHHHHHHHH---H-T
T ss_pred CceEEEEEecCCc---cCcccEEEEEEEcCCEEEEeh----------hhHHHHHHHHcC--CCEEEeccHHHHH---H-c
Confidence 3489999998752 124456677888888888764 123578999998 8899999999999 4 7
Q ss_pred CCcccccccchhhhHHHh---hc-CCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009000 425 GELECFKHYEMLLDIQNV---FK-EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRS 500 (547)
Q Consensus 425 GIl~~~~~~~~vfDtmLA---l~-~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~ 500 (547)
|+.. .++||||++ ++ . +|+|++|+++|++. |. ++|+.||+++++||+.|.+
T Consensus 72 Gi~~-----~~~fDT~laAyLL~p~-~~~L~~La~~yl~~----------~g---------k~a~~DA~~t~~L~~~L~~ 126 (540)
T 4dfk_A 72 GLGL-----PPGDDPMLLAYLLDPS-NTTPEGVARRYGGE----------WT---------EEAGERAALSERLFANLWG 126 (540)
T ss_dssp TCCC-----CBCCCHHHHHHHHCTT-CCCHHHHHHHHTSC----------CC---------SCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-----CcceeHHHHHHHhCCC-CCCHHHHHHHHhhh----------hc---------cchHHHHHHHHHHHHHHHH
Confidence 8742 368999999 33 5 89999999999975 11 1367899999999999999
Q ss_pred cc-CC
Q 009000 501 CS-QP 504 (547)
Q Consensus 501 rL-ee 504 (547)
+| ++
T Consensus 127 ~L~~~ 131 (540)
T 4dfk_A 127 RLEGE 131 (540)
T ss_dssp HTTTC
T ss_pred HHHhh
Confidence 99 54
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.71 E-value=0.00017 Score=70.09 Aligned_cols=159 Identities=13% Similarity=0.055 Sum_probs=91.6
Q ss_pred EEcCHHHHHHHHHHhhCCCeEEEEeeeecCCccCCcCCceeEEEEE---e----CCe-----EEEEEcCc---cc-----
Q 009000 327 WVDEVDGLHKAICHIEGCKVVGIDCEWKPNYVKGCKMNKVSIMQIA---S----DEM-----VFIFDLIK---LA----- 386 (547)
Q Consensus 327 ~Idt~eeL~~lle~L~~a~vIgfDtE~~~l~~~~~~~~~VsLlQLA---t----~~~-----a~~Idl~~---l~----- 386 (547)
-+++.+.+..+...+.....+.||+|++++. +..-.+++|+ + .+. .|..-+.. ..
T Consensus 20 ~~~~~~~~~~l~~~l~~~~~vviD~ETTGl~-----~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~ 94 (235)
T 3v9w_A 20 HMSDNAQLTGLCDRFRGFYPVVIDVETAGFN-----AKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEA 94 (235)
T ss_dssp ---------CHHHHTTTEEEEEEEEEESSSC-----TTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHH
T ss_pred cccccccccCchhcccCCcEEEEEEeCCCCC-----CCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHH
Confidence 3556666777778888888999999999863 1222344433 1 122 12221111 00
Q ss_pred -------C-----CCc--hHHHHHHHHhhcC-------CCceEEEechHHHHHHHHHH---hCCcc-cccccchhhhHHH
Q 009000 387 -------E-----DVP--DVLDSCLTRILQS-------PGILKLGYNFQCDIKQLAHS---YGELE-CFKHYEMLLDIQN 441 (547)
Q Consensus 387 -------~-----~~p--~~Ll~~Lk~LLed-------~~I~KVGhnlK~Dl~vLa~~---~GIl~-~~~~~~~vfDtmL 441 (547)
. ..| .+....+.+++++ ++...||||+++|+..|.+. +|+.. .+ ....++||+.
T Consensus 95 ~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~-~~~~~~Dt~~ 173 (235)
T 3v9w_A 95 LAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPF-HPFATFDTAA 173 (235)
T ss_dssp HHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCE-EEEEEEEHHH
T ss_pred HHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCC-CCCcEEEhHH
Confidence 0 001 1233455555542 46789999999999988653 36521 00 0134789998
Q ss_pred hhc--CCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009000 442 VFK--EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPTD 506 (547)
Q Consensus 442 Al~--~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee~~ 506 (547)
+.. ..+++|+.|++++ |++... .+.++|..||.++.+|+..|.+++++.+
T Consensus 174 la~~~~p~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 174 LAGLALGQTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp HHHHHHSCCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 843 2357999999876 544321 1135699999999999999999987644
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.27 E-value=0.026 Score=52.96 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=62.3
Q ss_pred HHHHHHHhhcCCCceEEEechHHHHHHHHHHhCCcccccccchhhhHHHhh------c---CCCCCHHHHHHHHhCCCCC
Q 009000 393 LDSCLTRILQSPGILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVF------K---EPKGGLSGLAEKILGAGLN 463 (547)
Q Consensus 393 Ll~~Lk~LLed~~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLAl------~---~~~~gLd~LAer~Lg~~L~ 463 (547)
+...|..++.+ ...||||+.+|+..|...+.- ..++||+... . ..+++|+.|+++++|.+..
T Consensus 73 v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~~-------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~ 143 (189)
T 1wlj_A 73 ARLEILQLLKG--KLVVGHDLKHDFQALKEDMSG-------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQ 143 (189)
T ss_dssp HHHHHHHHHTT--SEEEESSHHHHHHHTTCCCTT-------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHCC--CEEEECCcHHHHHHHHHhCCC-------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCC
Confidence 34567777864 578999999999998753221 2356887541 1 2578999999998897654
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 009000 464 KTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQPT 505 (547)
Q Consensus 464 K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee~ 505 (547)
.... .+.|..||.++.+|+..+.++++..
T Consensus 144 ~~~~-------------~H~Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 144 NSLL-------------GHSSVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp CCTT-------------CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-------------CcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 2110 1338899999999999988777553
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.19 E-value=0.062 Score=50.11 Aligned_cols=90 Identities=21% Similarity=0.136 Sum_probs=61.9
Q ss_pred HHHHHHHhhcCCCceEEEechHHHHHHHHHH---hCCcccccccchhhhHHHhh----cCCCCCHHHHHHHHhCCCCCCC
Q 009000 393 LDSCLTRILQSPGILKLGYNFQCDIKQLAHS---YGELECFKHYEMLLDIQNVF----KEPKGGLSGLAEKILGAGLNKT 465 (547)
Q Consensus 393 Ll~~Lk~LLed~~I~KVGhnlK~Dl~vLa~~---~GIl~~~~~~~~vfDtmLAl----~~~~~gLd~LAer~Lg~~L~K~ 465 (547)
+...|..++.+ ...||||..+|+..|.+. +|+... ...++||+... +..+++|+.++++ +|++...
T Consensus 82 v~~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~---~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~~- 154 (186)
T 2p1j_A 82 VLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDW---ERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPFR- 154 (186)
T ss_dssp HHHHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCC---CCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCSTT-
T ss_pred HHHHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCC---CCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCCC-
Confidence 34566777765 467999999999988642 344110 13467987663 2457899999986 5765320
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009000 466 RRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 504 (547)
Q Consensus 466 e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee 504 (547)
.+.|..||..+.+|+..+.++.++
T Consensus 155 ---------------~H~Al~Da~~t~~l~~~l~~~~~~ 178 (186)
T 2p1j_A 155 ---------------HHRALDDARVTAQVFLRFVEMMKK 178 (186)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHTTCC--
T ss_pred ---------------CcCHHHHHHHHHHHHHHHHHHHHh
Confidence 245889999999999999877655
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=94.82 E-value=0.27 Score=47.06 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=56.3
Q ss_pred CceEEEechHHHHHHHHHH---hCCcc-cccccchhhhHHHhhc--CCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCH
Q 009000 405 GILKLGYNFQCDIKQLAHS---YGELE-CFKHYEMLLDIQNVFK--EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQ 478 (547)
Q Consensus 405 ~I~KVGhnlK~Dl~vLa~~---~GIl~-~~~~~~~vfDtmLAl~--~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~ 478 (547)
....||||..+|+..|.+. +|+.. .+ ....++||+.... ..+++|+.++++ +|++.....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~-~~~~~iDt~~l~~~~~~~~~L~~l~~~-~gi~~~~~~------------ 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPF-HPFSSFDTATLAGLAYGQTVLAKACQA-AGMEFDNRE------------ 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCE-EEEEEEEHHHHHHHHHSCCSHHHHHHH-TTCCCCTTS------------
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCc-cccceeeHHHHHHHHcCCCCHHHHHHH-cCCCcCCCC------------
Confidence 4567999999999988642 45420 00 0134679987643 235789999886 576542111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 009000 479 NQLEYAALDAVVLLQIFHHVRSCSQP 504 (547)
Q Consensus 479 ~Qi~YAAeDA~vlLrL~~~L~~rLee 504 (547)
.+.|..||.++.+|+..+..++.+
T Consensus 192 --~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 192 --AHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHH
Confidence 234889999999999998888755
No 16
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=93.91 E-value=1.4 Score=40.80 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCCceEEEechHHHHHHHHHH---hCCc-ccccccchhhhHHHhh----cCCCCCHHHHHHHHhCCCCCC
Q 009000 393 LDSCLTRILQSPGILKLGYNFQCDIKQLAHS---YGEL-ECFKHYEMLLDIQNVF----KEPKGGLSGLAEKILGAGLNK 464 (547)
Q Consensus 393 Ll~~Lk~LLed~~I~KVGhnlK~Dl~vLa~~---~GIl-~~~~~~~~vfDtmLAl----~~~~~gLd~LAer~Lg~~L~K 464 (547)
+...|..++.+. ..||||..+|+..|.+. +|+. +.+.....++||+... ...+++|+.++++ +|.+...
T Consensus 85 v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~ 161 (194)
T 2gui_A 85 VADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSK 161 (194)
T ss_dssp HHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTT
T ss_pred HHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCC
Confidence 345667777653 56999999999988652 4542 1110013567887652 2446799999986 5765421
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009000 465 TRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 504 (547)
Q Consensus 465 ~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee 504 (547)
.. .+.|..||.++.+|+..+..+.+.
T Consensus 162 ~~--------------~H~Al~Da~~ta~l~~~l~~~~~~ 187 (194)
T 2gui_A 162 RT--------------LHGALLDAQILAEVYLAMTGGQTS 187 (194)
T ss_dssp CS--------------SCCHHHHHHHHHHHHHHHTC----
T ss_pred CC--------------CCChHHHHHHHHHHHHHHHhccch
Confidence 00 133889999999999988665443
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=86.19 E-value=4.8 Score=43.41 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCCCceEEEec-hHHHHHHHHHH---hCCcccccc---cchhhhHHHh----h--------------cCCC
Q 009000 393 LDSCLTRILQSPGILKLGYN-FQCDIKQLAHS---YGELECFKH---YEMLLDIQNV----F--------------KEPK 447 (547)
Q Consensus 393 Ll~~Lk~LLed~~I~KVGhn-lK~Dl~vLa~~---~GIl~~~~~---~~~vfDtmLA----l--------------~~~~ 447 (547)
+...+..++..+....|||| +.+|..+|.+. +|+...... ....+||+-. . ...+
T Consensus 84 vl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s 163 (482)
T 2qxf_A 84 FAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPS 163 (482)
T ss_dssp HHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBC
T ss_pred HHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCC
Confidence 34566677875567789999 89999887642 333110000 0234565543 1 1136
Q ss_pred CCHHHHHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 009000 448 GGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSC 501 (547)
Q Consensus 448 ~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~r 501 (547)
++|+.|++. +|++.. ..+-|-.||.++.+|+..+..+
T Consensus 164 ~kL~~L~~~-~Gi~~~----------------~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 164 FRLEHLTKA-NGIEHS----------------NAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CCHHHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-cCCCCC----------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 789999875 475432 1244778999999999888654
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=85.53 E-value=1.5 Score=44.96 Aligned_cols=94 Identities=14% Similarity=0.060 Sum_probs=62.2
Q ss_pred HHHHHHHHhhcC--CCceEEEec-hHHHHHHHHHH---hCCcccccccchhhhHHHhh----c---------CCCCCHHH
Q 009000 392 VLDSCLTRILQS--PGILKLGYN-FQCDIKQLAHS---YGELECFKHYEMLLDIQNVF----K---------EPKGGLSG 452 (547)
Q Consensus 392 ~Ll~~Lk~LLed--~~I~KVGhn-lK~Dl~vLa~~---~GIl~~~~~~~~vfDtmLAl----~---------~~~~gLd~ 452 (547)
++...|..++.+ +....|||| ..+|...|.+. +|+...+ ....++|++... . ..+++|++
T Consensus 103 ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~-~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~ 181 (314)
T 3u3y_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHTTC-------CCCCSHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC-CCceEEeHHHHHHHHHHHhCccccccCCCCCHHH
Confidence 455666777776 225679999 99999988653 3542100 012256877631 1 25799999
Q ss_pred HHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009000 453 LAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 502 (547)
Q Consensus 453 LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rL 502 (547)
++++++|++... .+-|-.||.++.+|+..+.+++
T Consensus 182 L~~~l~gi~~~~----------------aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 182 IYTRLYWQAPTD----------------SHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp HHHHHHSSCCSC----------------SSSHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHhcCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 999988876431 1338889999999988766544
No 19
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=85.43 E-value=1.1 Score=42.87 Aligned_cols=93 Identities=20% Similarity=0.111 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCC--CceEEEech-HHHHHHHHHH---hCCcccccccchhhhHHHh----h---------c-CCCCCHH
Q 009000 392 VLDSCLTRILQSP--GILKLGYNF-QCDIKQLAHS---YGELECFKHYEMLLDIQNV----F---------K-EPKGGLS 451 (547)
Q Consensus 392 ~Ll~~Lk~LLed~--~I~KVGhnl-K~Dl~vLa~~---~GIl~~~~~~~~vfDtmLA----l---------~-~~~~gLd 451 (547)
++...|..+++.- ....||||. .+|+..|.+. +|+... ....++||+.. . . ..+++|+
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~--~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~ 175 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP--RDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLG 175 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCC--TTCEEEEHHHHHHHHHHHC----------CCSHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCC--CCCEEEEHHHHHHHHHhccCccccCCCCCCCCHH
Confidence 4456677788763 256799999 9999888642 454210 01246798765 2 1 2578999
Q ss_pred HHHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009000 452 GLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 502 (547)
Q Consensus 452 ~LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rL 502 (547)
.++++++|.+.. ..+.|-.||..+.+|+..+.+++
T Consensus 176 ~l~~~~~gi~~~----------------~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 176 SLFHRYFRAEPS----------------AAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhCCCCc----------------cCccHHHHHHHHHHHHHHHHHHH
Confidence 999988886532 13568899999999999887654
No 20
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=83.40 E-value=1.8 Score=42.05 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcC--CCceEEEech-HHHHHHHHHH---hCCcccccccchhhhHHHhhc-------------CCCCCHHH
Q 009000 392 VLDSCLTRILQS--PGILKLGYNF-QCDIKQLAHS---YGELECFKHYEMLLDIQNVFK-------------EPKGGLSG 452 (547)
Q Consensus 392 ~Ll~~Lk~LLed--~~I~KVGhnl-K~Dl~vLa~~---~GIl~~~~~~~~vfDtmLAl~-------------~~~~gLd~ 452 (547)
++...|..++.+ +....||||. .+|+..|.+. +|+...+ ....++|++.... ..+++|++
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~-~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~ 181 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHHHHCC------CCCSHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCc-cCCeEeehHHHHHHHHhhcCccccCCCCCcCHHH
Confidence 455667777776 2256799995 9999988653 4542100 0124578877521 25789999
Q ss_pred HHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009000 453 LAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 502 (547)
Q Consensus 453 LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rL 502 (547)
|+++++|++... .+-|..||.++.+|+..+..++
T Consensus 182 l~~~~~gi~~~~----------------~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 182 IYTRLYWQAPTD----------------SHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHHHHSSCCSS----------------TTSHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHhCCCCCC----------------CcChHHHHHHHHHHHHHHHHHH
Confidence 999999976531 1338899999999988765543
No 21
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=70.43 E-value=41 Score=38.18 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=83.7
Q ss_pred CCCeEEEEeeeecCCccCCcCCceeEEEEEe--CCeEEEEEcCcc-----c-CCCchHHHHHHHHhhc--CCCceEEEec
Q 009000 343 GCKVVGIDCEWKPNYVKGCKMNKVSIMQIAS--DEMVFIFDLIKL-----A-EDVPDVLDSCLTRILQ--SPGILKLGYN 412 (547)
Q Consensus 343 ~a~vIgfDtE~~~l~~~~~~~~~VsLlQLAt--~~~a~~Idl~~l-----~-~~~p~~Ll~~Lk~LLe--d~~I~KVGhn 412 (547)
.-.+++||.|+.+.. ++.+..-.+++|+. .+...++-.... . .....+++..+..++. ||+ ..+|||
T Consensus 134 ~l~ilsfDIEt~~~~--~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPD-iivGyN 210 (775)
T 1qht_A 134 ELTMLAFAIATLYHE--GEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPD-VLITYN 210 (775)
T ss_dssp CCCEEEEEEEECCCT--TCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCS-EEEESS
T ss_pred CcEEEEEEEEEcCCC--CCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCC-EEEEeC
Confidence 447899999998631 12222233555553 222222211110 0 0111234445555554 565 468999
Q ss_pred hH-HHHHHHHH---HhCCcccccc-------------------cchhhhHHHhhc----CCCCCHHHHHHHHhCCCCCC-
Q 009000 413 FQ-CDIKQLAH---SYGELECFKH-------------------YEMLLDIQNVFK----EPKGGLSGLAEKILGAGLNK- 464 (547)
Q Consensus 413 lK-~Dl~vLa~---~~GIl~~~~~-------------------~~~vfDtmLAl~----~~~~gLd~LAer~Lg~~L~K- 464 (547)
.. +|+..|.. .+|+...+.+ -...+|++..+. ..+++|+.+++.+||..-..
T Consensus 211 ~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv 290 (775)
T 1qht_A 211 GDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKV 290 (775)
T ss_dssp TTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCCCCCCC
T ss_pred CCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCCCCCcc
Confidence 86 57765532 2554211100 022568877642 45799999999999974321
Q ss_pred -Ccccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009000 465 -TRRNS-NWEQRPLSQNQLEYAALDAVVLLQIFHHVR 499 (547)
Q Consensus 465 -~e~~S-dW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~ 499 (547)
..++. .|...+-...-++|...||..+++|+..+.
T Consensus 291 ~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp CHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11222 244433124558999999999999977653
No 22
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=63.90 E-value=14 Score=34.09 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=60.0
Q ss_pred HHHHHHhhcCCC-----ceEEEechHHHHH-HHHHH---hCCcccccccchhhhHHHhhc------CCCCCHHHHHHHHh
Q 009000 394 DSCLTRILQSPG-----ILKLGYNFQCDIK-QLAHS---YGELECFKHYEMLLDIQNVFK------EPKGGLSGLAEKIL 458 (547)
Q Consensus 394 l~~Lk~LLed~~-----I~KVGhnlK~Dl~-vLa~~---~GIl~~~~~~~~vfDtmLAl~------~~~~gLd~LAer~L 458 (547)
...+..++.+.. ...||||..+|+. .|.+. +|+... .....++||+..+. ..+++|+.++++ +
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p-~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~ 166 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP-PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-L 166 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCC-GGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-T
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCc-ccccceEEHHHHHHHHhCCCCccchHHHHHHH-c
Confidence 345556666432 3579999999996 77542 454210 00125789987632 135899999976 5
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009000 459 GAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 504 (547)
Q Consensus 459 g~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee 504 (547)
|++... . .+-|..||..+.+|+..+..+...
T Consensus 167 gi~~~~-~--------------~H~Al~Da~~ta~l~~~l~~~~~~ 197 (204)
T 1w0h_A 167 GMDYDG-R--------------PHCGLDDSKNIARIAVRMLQDGCE 197 (204)
T ss_dssp TCCCCS-C--------------TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCC-C--------------ccCcHHHHHHHHHHHHHHHHCCCe
Confidence 765321 0 133889999999999998877543
No 23
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=58.59 E-value=1.6e+02 Score=33.69 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCCCceEEEechH-HHHHHHHH---HhCCcc---ccc---------ccchhhhHHHhhc-----------
Q 009000 392 VLDSCLTRILQSPGILKLGYNFQ-CDIKQLAH---SYGELE---CFK---------HYEMLLDIQNVFK----------- 444 (547)
Q Consensus 392 ~Ll~~Lk~LLed~~I~KVGhnlK-~Dl~vLa~---~~GIl~---~~~---------~~~~vfDtmLAl~----------- 444 (547)
+++..+..++.+.. ..+|||.. +|+..|.. .+|+.. .+. .....+|++..+.
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~ 337 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc
Confidence 56677778888875 68999986 68876643 255521 010 0122456665421
Q ss_pred -CCCCCHHHHHHHHhCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009000 445 -EPKGGLSGLAEKILGAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIF 495 (547)
Q Consensus 445 -~~~~gLd~LAer~Lg~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~ 495 (547)
..+++|+.+++.+||..-. .-...|.... ...-++|.-.||..+++|+
T Consensus 338 kl~sysL~~Va~~~Lg~~K~--dv~~~i~~~~-~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 338 KYNEYNLDAVAKALLGTSKV--KVDTLISFLD-VEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CCSSCSHHHHHHHHHCCCCC----SSCTTTCC-HHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHhCCCCc--chhHhhhhcc-HHHHHHHHHHHHHHHHHHH
Confidence 1579999999999996421 1112222211 2344799999999999985
No 24
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=57.55 E-value=48 Score=32.89 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=61.2
Q ss_pred HHHHHHhhcCC-----CceEEEechHHHHH-HHHHH---hCCcccccccchhhhHHHhhc----CC--CCCHHHHHHHHh
Q 009000 394 DSCLTRILQSP-----GILKLGYNFQCDIK-QLAHS---YGELECFKHYEMLLDIQNVFK----EP--KGGLSGLAEKIL 458 (547)
Q Consensus 394 l~~Lk~LLed~-----~I~KVGhnlK~Dl~-vLa~~---~GIl~~~~~~~~vfDtmLAl~----~~--~~gLd~LAer~L 458 (547)
...|..++.+. ....||||..+|+. .|... +|+... .-...++|++..+. .. .++|+.++++ +
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p-~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~ 234 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP-PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-L 234 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCC-GGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-T
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCC-cccchHHHHHHHHHHHhCCCCCCccHHHHHHH-c
Confidence 44566666653 14679999999998 87653 454210 00124679876632 12 3899999986 5
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009000 459 GAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 504 (547)
Q Consensus 459 g~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee 504 (547)
|++... . .+-|-.||.++.+|+..+..+...
T Consensus 235 gi~~~g-~--------------~H~Al~DA~ata~l~~~l~~~~~~ 265 (299)
T 1zbh_A 235 GMDYDG-R--------------PNCGLDDSKNIARIAVRMLQDGCE 265 (299)
T ss_dssp TCCCCS-C--------------TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCC-C--------------CCChHHHHHHHHHHHHHHHHhCCc
Confidence 765321 0 133889999999999999887654
No 25
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=54.61 E-value=85 Score=36.46 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=40.3
Q ss_pred hhhHHHhh----cCCCCCHHHHHHHHhCCCCC--CCcccccCCC-CCC-CHHHHHHHHHHHHHHHHHHHHH
Q 009000 436 LLDIQNVF----KEPKGGLSGLAEKILGAGLN--KTRRNSNWEQ-RPL-SQNQLEYAALDAVVLLQIFHHV 498 (547)
Q Consensus 436 vfDtmLAl----~~~~~gLd~LAer~Lg~~L~--K~e~~SdW~~-rpL-t~~Qi~YAAeDA~vlLrL~~~L 498 (547)
.+|++..+ +..+++|+.+++.+||..-. ..+++..|.. .+- ...-+.|.-.||..+++|+..+
T Consensus 395 ~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 395 QLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777664 24689999999999996432 1223333322 111 1233689999999999998876
No 26
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=49.46 E-value=6.7 Score=39.98 Aligned_cols=90 Identities=13% Similarity=-0.019 Sum_probs=58.7
Q ss_pred HHHHHHhhhccccchHHHHHHHhccchH--------HHHHHHHhcCc-hHHHHHHhhhcchH--HHHHHhhcchhHHHHH
Q 009000 206 AVSLLEHFSIRQSGESFLLKMIQNKEFK--------AAEKWATFMGK-PILLKRLAEKACWD--IAEAKTKGDKRLLEYL 274 (547)
Q Consensus 206 ~~~li~~f~~~~~~~~~l~~~~~~~~~~--------~a~~~~~~~~~-~~~~~~l~~k~~wd--~a~~~~~~D~~l~~~l 274 (547)
.-.+.++|.+....+..+--|+-+...+ .|.+|...+|- ..+++.+.+ .|+ +.++++..|+++. ..
T Consensus 211 ~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~~--~l~~~~~l~~i~~~~~v~-~~ 287 (336)
T 1rxw_A 211 LESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKV--NIDHVEEIRNFFLNPPVT-DD 287 (336)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC------CHHHHHHHHSCCCC-CC
T ss_pred HHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCCC--CCccHHHHHHHHhCCCCC-Cc
Confidence 4456677777655444444455422222 57777777663 344555432 343 3778888888877 36
Q ss_pred HHHhhccCCHHHHHHHH-HHcCCcc
Q 009000 275 VYLAMEAGYSEKVDELC-ERYSLEG 298 (547)
Q Consensus 275 v~L~~~~~d~~~L~~l~-~ryef~s 298 (547)
.++.+.+||.+++.+++ +++||+.
T Consensus 288 ~~~~~~~~d~~~l~~~~~~~~~f~~ 312 (336)
T 1rxw_A 288 YRIEFREPDFEKAIEFLCEEHDFSR 312 (336)
T ss_dssp CCCCCCCCCHHHHHHHHTTTTCCCH
T ss_pred ccccCCCCCHHHHHHHHHHccCCCH
Confidence 77888999999999999 9999974
No 27
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=48.74 E-value=14 Score=30.64 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=41.2
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+|+++-+.-.+....+-.|-.|........+.+|++.||++++++
T Consensus 41 gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l 87 (99)
T 3g5g_A 41 GMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVF 87 (99)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 45688888888888899999999998888999999999999988776
No 28
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=46.56 E-value=77 Score=32.40 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=60.9
Q ss_pred HHHHHHhhcCC-----CceEEEechHHHHH-HHHHH---hCCcccccccchhhhHHHhhc----CC--CCCHHHHHHHHh
Q 009000 394 DSCLTRILQSP-----GILKLGYNFQCDIK-QLAHS---YGELECFKHYEMLLDIQNVFK----EP--KGGLSGLAEKIL 458 (547)
Q Consensus 394 l~~Lk~LLed~-----~I~KVGhnlK~Dl~-vLa~~---~GIl~~~~~~~~vfDtmLAl~----~~--~~gLd~LAer~L 458 (547)
...|..++.+. ....|+||..+|+. .|... +|+... .-...++|++..+. .. .++|+.|+++ +
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p-~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~ 284 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP-PFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-L 284 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCC-GGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-T
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCc-cccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-c
Confidence 44556677653 14679999999998 87643 454210 00124678877642 12 3899999976 5
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009000 459 GAGLNKTRRNSNWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQP 504 (547)
Q Consensus 459 g~~L~K~e~~SdW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLee 504 (547)
|++... + .+-|..||.++.+|+..+..+...
T Consensus 285 gi~~~g--~-------------~HrAl~DA~ata~ll~~ll~~~~~ 315 (349)
T 1zbu_A 285 GMDYDG--R-------------PHCGLDDSKNIARIAVRMLQDGCE 315 (349)
T ss_dssp TCCCCS--C-------------TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCC--C-------------CCCHHHHHHHHHHHHHHHHHhccc
Confidence 765321 0 133889999999999998877654
No 29
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=43.39 E-value=21 Score=27.41 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=39.6
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++++-+.-.+....+-.+..|...-....+.++++.||+++.++
T Consensus 16 lsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l 61 (77)
T 2k9q_A 16 LTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNAL 61 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 4588888888888899999999987767788999999999988776
No 30
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=42.28 E-value=19 Score=27.28 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=40.1
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++|+-+.-.+....+-.+..|........+.++++.||+++.++
T Consensus 22 lsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l 67 (73)
T 3omt_A 22 KTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVREL 67 (73)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4588888888888899999999988878999999999999988775
No 31
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=40.87 E-value=84 Score=28.12 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=48.5
Q ss_pred HHHHHHhhcCC----CceEEEechHHHHHHHHHHhCCcccccccchhhhHHHhhcCCCCCHHHHHHHHhCCCCCCCcccc
Q 009000 394 DSCLTRILQSP----GILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNS 469 (547)
Q Consensus 394 l~~Lk~LLed~----~I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLAl~~~~~gLd~LAer~Lg~~L~K~e~~S 469 (547)
...+..++.+- ....||||+.+|+..|.+.+.-.... -....+|+. ++..++.+++.. +.+
T Consensus 85 ~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~-~~~~~~d~~--------tl~~l~~~~~p~-~~~----- 149 (180)
T 2igi_A 85 ELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAY-FHYRYLDVS--------TLKELARRWKPE-ILD----- 149 (180)
T ss_dssp HHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHH-SCSCEEETH--------HHHHHHHHHCGG-GGG-----
T ss_pred HHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccC-CCcceeeHH--------HHHHHHHHhChH-hhh-----
Confidence 45566677651 35689999999999998632110000 001233411 233345554321 000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009000 470 NWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCS 502 (547)
Q Consensus 470 dW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rL 502 (547)
+. +. ...+-|-.||.++.+|+..+.+++
T Consensus 150 ~i---~~--~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 150 GF---TK--QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp GS---CC--CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CC---CC--cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 00 00 012458899999999999988765
No 32
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=38.60 E-value=34 Score=26.45 Aligned_cols=51 Identities=6% Similarity=0.086 Sum_probs=42.8
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccchHHHH
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKAI 172 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a~ 172 (547)
.-+|+++-+.-++.-..+-.+..|........+.++++.||++.+++...+
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~l~~~l 75 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSI 75 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhHHH
Confidence 345888888888888999999999888778999999999999988775443
No 33
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=38.49 E-value=27 Score=27.23 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=45.2
Q ss_pred hhHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhcccccch
Q 009000 107 FSHLIISALRRHQKTTVNSADSTQAKEIAAYLFLDITGG-FVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
|.+=| ..+|.-.. -+++|+-+.-.+....+-.+-.| ........+.+|++.||+++.++
T Consensus 11 ~~~~i-k~~R~~~g--ltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l 70 (78)
T 3qq6_A 11 IGQRI-KQYRKEKG--YSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 70 (78)
T ss_dssp HHHHH-HHHHHHTT--CCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHHHH
T ss_pred ccHHH-HHHHHHcC--CCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 44433 34455333 45888888888889999999999 67778899999999999987775
No 34
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=38.17 E-value=37 Score=25.30 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=39.7
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+++|+-+.-.+....+-.+..|........+.++++.||++..++
T Consensus 26 g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l 72 (74)
T 1y7y_A 26 GLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPREL 72 (74)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 34688888888888899999999987767888999999999987765
No 35
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.11 E-value=86 Score=27.23 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHhhchhhHHHHHHHhhhccccchHHHHHHHhccchHHHHHHHHhcCchHH
Q 009000 194 IFAMIDSQSYMTAVSLLEHFSIRQSGESFLLKMIQNKEFKAAEKWATFMGKPIL 247 (547)
Q Consensus 194 i~~~~~~~~~~~~~~li~~f~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 247 (547)
|-+.+++..-.++|+||+--| +|--|+|+.|-.+..-.-.|.+
T Consensus 29 IAdwL~~~~~~E~v~lIR~sS-----------LmNrG~Yq~Al~l~~~~c~pdl 71 (116)
T 2p58_C 29 IAEWLHLKGEEEAVQLIRLSS-----------LMNRGDYASALQQGNKLAYPDL 71 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHTTCHHHHHHHHTTSCCGGG
T ss_pred HHHHHHhCCcHHHHHHHHHHH-----------HHcchhHHHHHHhcCCCCCchH
Confidence 344445533378999998544 5567889999988888778876
No 36
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=37.87 E-value=34 Score=27.39 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=40.0
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+++++-+.-.+....+-.+..|........+.+|++.||++++++
T Consensus 22 glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l 68 (94)
T 2kpj_A 22 EKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDL 68 (94)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 34688888888888889999999987767888999999999988876
No 37
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=37.83 E-value=22 Score=25.82 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=39.1
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++|+.+.-.+....+-.+..|........+.++++.||++..++
T Consensus 15 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l 60 (66)
T 2xi8_A 15 ISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI 60 (66)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4578888888888899999999987777888999999999987665
No 38
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=36.80 E-value=34 Score=26.38 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=40.9
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+++++.+.-.+....+-.+-.|........+.+|++.||++++++
T Consensus 24 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~~l 70 (82)
T 3s8q_A 24 GMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVF 70 (82)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 45688888888888899999999988778899999999999988776
No 39
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=36.80 E-value=32 Score=26.77 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhcccccchH
Q 009000 113 SALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDIE 169 (547)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~~ 169 (547)
.-||+..+.. +++++-+.-++....+-.+-.|.. ......+.+|++.||+++.++-
T Consensus 19 ~~l~~~R~~~-sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l~ 75 (86)
T 2ofy_A 19 ELLRSARGDM-SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVA 75 (86)
T ss_dssp HHHHHHHTTS-CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHC-CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 3344433333 688888888888999999999987 6667889999999999887763
No 40
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.67 E-value=30 Score=26.02 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=39.3
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++|+.+.-.+....+-.+..|........+.++++.||++.+++
T Consensus 24 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 24 RTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4578888888888889999999987777888999999999988775
No 41
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.33 E-value=35 Score=24.89 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=38.7
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++|+-+.-.+....+-.+..|........+.++++.||++..++
T Consensus 19 ~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l 64 (68)
T 2r1j_L 19 IRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYL 64 (68)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 3588888888888889999999977767888999999999977664
No 42
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=34.67 E-value=42 Score=26.54 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+|+|+-+.-.+....+-.+-.|........+.+|++.||++++++
T Consensus 26 glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l 72 (91)
T 1x57_A 26 GLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK 72 (91)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSST
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 34688888888888899999999987767888999999999999986
No 43
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=33.90 E-value=40 Score=24.95 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=39.3
Q ss_pred cCCccchhHHHH--HHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKE--IAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+++|+-+.-. +....+-.+-.|........+.++++.||++++++
T Consensus 21 glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 21 GLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp TCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGG
T ss_pred CCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 346888877777 78888999999987777888999999999988765
No 44
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=32.58 E-value=89 Score=28.62 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCC----ceEEEechHHHHHHHHHHhCCcccccccchhhhHHHhhcCCCCCHHHHHHHHhCCCCCCCcccc
Q 009000 394 DSCLTRILQSPG----ILKLGYNFQCDIKQLAHSYGELECFKHYEMLLDIQNVFKEPKGGLSGLAEKILGAGLNKTRRNS 469 (547)
Q Consensus 394 l~~Lk~LLed~~----I~KVGhnlK~Dl~vLa~~~GIl~~~~~~~~vfDtmLAl~~~~~gLd~LAer~Lg~~L~K~e~~S 469 (547)
...+..++.+.- ...||||+.+|...|.+.+.-.... -....+|+. +|..++.+++.. +.+ ..
T Consensus 89 ~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~-~~~~~~d~~--------~l~~l~~~~~p~-~~~--~i- 155 (194)
T 2gbz_A 89 EAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERY-FHYRNLDVS--------TIKELARRWAPA-VAS--GF- 155 (194)
T ss_dssp HHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHH-SCSCEEEHH--------HHHHHHHHHCGG-GGT--TC-
T ss_pred HHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhccc-CCCccccHH--------HHHHHHHHhCHH-HHh--CC-
Confidence 445566666531 3479999999999997632210000 001122432 355667776421 000 00
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccC
Q 009000 470 NWEQRPLSQNQLEYAALDAVVLLQIFHHVRSCSQ 503 (547)
Q Consensus 470 dW~~rpLt~~Qi~YAAeDA~vlLrL~~~L~~rLe 503 (547)
+. ...+.|-.||.++.+|+..+..++.
T Consensus 156 -----~~--~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 156 -----AK--SSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp -----CC--CSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred -----CC--CCCcccHHHHHHHHHHHHHHHHHhc
Confidence 11 1124588999999999999988764
No 45
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.87 E-value=49 Score=25.85 Aligned_cols=62 Identities=6% Similarity=0.166 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhhhcc-cCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhcccccch
Q 009000 107 FSHLIISALRRHQKT-TVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~ 168 (547)
....+-.-||++.+. .-+|+|+-+.-.+....+-++..|.. ......+.++++.||++++-+
T Consensus 15 ~~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~~l 78 (83)
T 2a6c_A 15 MRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEIN 78 (83)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCC
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeEEE
Confidence 333444455554433 44688888888888899999999987 356778999999999987643
No 46
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.52 E-value=41 Score=25.31 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=40.0
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+++++.+.-.+....+-.+..|........+.++++.||+++.++
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~~l 69 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTF 69 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 34588888888888889999999987777888999999999987765
No 47
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=30.98 E-value=1.1e+02 Score=28.66 Aligned_cols=84 Identities=6% Similarity=0.067 Sum_probs=58.6
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccchHHHHhhhhhccccchhHHHHHHHHHHHHHHhhc
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKAITQLKAQNEHRFDTAKTVIEQYIFAMIDSQ 201 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 201 (547)
+-+|+++.+.- +....+-.|-.|........+.+|++.||++++.+-.-- +....... ..+.+-+..++..+
T Consensus 18 ~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~------~~~~~~~~-~~l~~~i~~~~~~~ 89 (293)
T 3u3w_A 18 GLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVL------IYSDIERK-KQFKDQVIMLCKQK 89 (293)
T ss_dssp TCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTT------TSSCHHHH-HHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCC------CCCcchhH-HHHHHHHHHHHHHh
Confidence 34688887777 888889999999988889999999999999988763321 11112222 22233456667778
Q ss_pred hhhHHHHHHHhh
Q 009000 202 SYMTAVSLLEHF 213 (547)
Q Consensus 202 ~~~~~~~li~~f 213 (547)
.|..|..+++..
T Consensus 90 ~y~~a~~~~~~~ 101 (293)
T 3u3w_A 90 RYKEIYNKVWNE 101 (293)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 888888777654
No 48
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=30.32 E-value=31 Score=26.84 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=40.8
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccchH
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIE 169 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~ 169 (547)
.-+++++-+.-.+....+-.+..|........+.++++.||+++..+.
T Consensus 25 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~ 72 (88)
T 2wiu_B 25 GWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD 72 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHhc
Confidence 346888888888888899999999776677889999999999998875
No 49
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=30.17 E-value=63 Score=25.31 Aligned_cols=49 Identities=4% Similarity=0.026 Sum_probs=41.2
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccchHH
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEK 170 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~ 170 (547)
.-+|+++-+.-++....+-.+..|........+.++++.||++..++-.
T Consensus 30 glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~ 78 (92)
T 1lmb_3 30 GLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhh
Confidence 4568888888888889999999998776778899999999998888643
No 50
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=30.02 E-value=88 Score=27.10 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=29.6
Q ss_pred HHHHHhhchhhHHHHHHHhhhccccchHHHHHHHhccchHHHHHHHHhcCchHH
Q 009000 194 IFAMIDSQSYMTAVSLLEHFSIRQSGESFLLKMIQNKEFKAAEKWATFMGKPIL 247 (547)
Q Consensus 194 i~~~~~~~~~~~~~~li~~f~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 247 (547)
|-+.+++..-.++|+||+--| +|--|+|+.|-.+..-.-.|++
T Consensus 28 IAdwL~~~~~~E~v~lIR~sS-----------LmNrG~Yq~Al~l~~~~c~pdl 70 (115)
T 2uwj_G 28 IAEWLERLGQDEAARLIRISS-----------LANQGRYQEALAFAHGNPWPAL 70 (115)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHTTCHHHHHGGGTTCCCGGG
T ss_pred HHHHHHhCCcHHHHHHHHHHH-----------HHcchhHHHHHHhcCCCCCchH
Confidence 344445533378999998544 5567888888877777667776
No 51
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=29.78 E-value=44 Score=25.20 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=39.6
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+++++-+.-++....+-.+..|.. ......+.++++.||+++.++
T Consensus 20 g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~l 67 (78)
T 3b7h_A 20 NLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDF 67 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34588888888888899999999988 667888999999999987765
No 52
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.41 E-value=48 Score=24.77 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=39.0
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++++-+.-.+....+-.+..|........+.++++.||++...+
T Consensus 19 ls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l 64 (76)
T 1adr_A 19 IRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYL 64 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4588888888888889999999987767888999999999987775
No 53
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.26 E-value=39 Score=27.50 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=44.2
Q ss_pred HHHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 111 IISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-|..+|.-. .-+|+++-+.-.+..+++-.+..|... ....+.+|++.||++.+++
T Consensus 28 rLk~lR~~~--glTq~eLA~~~GiS~~tis~iE~G~~~-s~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 28 KLWKLLIDR--DMKKGELREAVGVSKSTFAKLGKNENV-SLTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHTTCCC-CHHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcCCCc-CHHHHHHHHHHHCcCHHHH
Confidence 345555522 346899999999999999999999764 7888999999999998886
No 54
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=28.01 E-value=50 Score=25.36 Aligned_cols=50 Identities=2% Similarity=-0.089 Sum_probs=42.3
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccchHHH
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKA 171 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a 171 (547)
.-+|+++-+.-++....+-.+-.|........+.++++.||++..++-..
T Consensus 27 gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~ 76 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSK 76 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34688888888888899999999988878899999999999988776443
No 55
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=27.98 E-value=45 Score=24.40 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=36.9
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++|+-+.-.+....+-.+..|....... +.++++.||++.+++
T Consensus 15 lsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l~~~~~~l 59 (69)
T 1r69_A 15 LNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASALGVSVDWL 59 (69)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHHCcCHHHH
Confidence 458888888888889999999997764444 999999999987765
No 56
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=26.11 E-value=57 Score=27.31 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=44.2
Q ss_pred HHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 112 ISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
|..+|.-. .-+++++-+.-.+....+-.+-.|........+.+|++.||++++++
T Consensus 28 Lk~~R~~~--gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l 82 (111)
T 3mlf_A 28 LKELRTDY--GLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDI 82 (111)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 34455523 34588888888888899999999987777889999999999988875
No 57
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=26.07 E-value=52 Score=27.14 Aligned_cols=55 Identities=9% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccchH
Q 009000 113 SALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIE 169 (547)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~ 169 (547)
..+|.-. .-+|+++-+.=++....+-.+-.|........+.+|++.||+++..+-
T Consensus 15 ~~~r~~~--glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~ 69 (114)
T 3op9_A 15 SRLKKEH--GLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELV 69 (114)
T ss_dssp HHHHHHH--TCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 4455433 345888888888888999999999887788999999999999887763
No 58
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=25.73 E-value=59 Score=27.01 Aligned_cols=62 Identities=6% Similarity=0.025 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhhcc-cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 107 FSHLIISALRRHQKT-TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
+...+-.-||+..+. .-+|+++-+.-.+....+-.+-.|........+.+|++.||+++.++
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l 80 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQL 80 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 334444445543322 44688888888888889999999998888999999999999988775
No 59
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=23.78 E-value=59 Score=27.98 Aligned_cols=38 Identities=16% Similarity=0.450 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcccccchHHHHhhhhhccccchhHHHHHHHH
Q 009000 151 EKLMVKILEAFDVRLTDIEKAITQLKAQNEHRFDTAKTVIEQ 192 (547)
Q Consensus 151 ~r~~~~l~e~f~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 192 (547)
-+++..+.|.|.++|-+|+.|+ +|+--++.+++.||..
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAl----LK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAF----LKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH----HHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----HHccccHHHHHHHHhC
Confidence 5788999999999999999997 4554467777777744
No 60
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=23.49 E-value=65 Score=27.09 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHHHhhhcccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 112 ISALRRHQKTTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
|..+|.-. .-+++++-+.-++....+-.+-.|........+.+|++.||+++.++
T Consensus 17 lk~~R~~~--glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l 71 (126)
T 3ivp_A 17 IKEARKKQ--GLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEF 71 (126)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHc--CCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 34455422 34688888888888899999999998778899999999999988876
No 61
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=22.75 E-value=94 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=45.2
Q ss_pred HHHHHHhhhc---ccCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 111 IISALRRHQK---TTVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 111 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
+-.-||...+ ..-+|+|+-+.-.+....+-.+-.|........+.+|++.||+++++.
T Consensus 35 ~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~e~ 95 (107)
T 2jvl_A 35 VGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGA 95 (107)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHhhh
Confidence 3344444433 245688988888888899999999987767888999999999999875
No 62
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.72 E-value=61 Score=23.79 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=36.7
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+++|+-+.-.+....+-.+..|..... ..+.++++.||++..++
T Consensus 17 lsq~~lA~~~gis~~~i~~~e~g~~~~~-~~l~~i~~~l~~~~~~l 61 (71)
T 1zug_A 17 MTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWL 61 (71)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTCCSSC-STHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCh-HHHHHHHHHHCCCHHHH
Confidence 4588888888888899999999987643 34999999999987765
No 63
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.49 E-value=52 Score=25.48 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=29.2
Q ss_pred chHHHHHHHhccchHHHHHHHHhcCch-----HHHHHHhhhcc
Q 009000 219 GESFLLKMIQNKEFKAAEKWATFMGKP-----ILLKRLAEKAC 256 (547)
Q Consensus 219 ~~~~l~~~~~~~~~~~a~~~~~~~~~~-----~~~~~l~~k~~ 256 (547)
++..|.-+-.+|.|=....+|..+|-+ +++++|++||.
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 344666667777888899999999965 45999999984
No 64
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=21.70 E-value=71 Score=26.65 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=40.4
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+|+|+-+.-.+.-..+-+|..|-.......+.+|.+.||++.+.+
T Consensus 27 gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~~l 73 (104)
T 3trb_A 27 KMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFW 73 (104)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 45688988888888999999999998888999999999999975443
No 65
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=21.52 E-value=83 Score=28.39 Aligned_cols=47 Identities=6% Similarity=-0.003 Sum_probs=40.9
Q ss_pred cCCccchhHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhcccccch
Q 009000 122 TVNSADSTQAKEIAAYLFLDITGGFV-DHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~l~e~f~~~~~~~ 168 (547)
.-+++|+-+.-.+...++-.|-.|.. ......+.+|++.||+++.++
T Consensus 23 g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l 70 (198)
T 2bnm_A 23 KMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGAL 70 (198)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHE
Confidence 34588888888888999999999988 777888999999999988887
No 66
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=20.81 E-value=52 Score=26.45 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=39.4
Q ss_pred CCccchhHHHHHHHHH----HHHHhcCCCCChhHHHHHHHHHhcccccch
Q 009000 123 VNSADSTQAKEIAAYL----FLDITGGFVDHDEKLMVKILEAFDVRLTDI 168 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~ 168 (547)
-+|+++-+.-++.... +-.+-.|........+.+|++.||++++++
T Consensus 15 lsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l 64 (98)
T 3lfp_A 15 ISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYL 64 (98)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred CCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4588887777777777 999999988778999999999999988886
No 67
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=20.50 E-value=83 Score=27.27 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=41.3
Q ss_pred hhHHHHHH-HHHHHHHHhhchhhH-HHHHHHhhhccccchHHHHHHHhccchHHHHHHHHhcCc--hHHHHHH
Q 009000 183 FDTAKTVI-EQYIFAMIDSQSYMT-AVSLLEHFSIRQSGESFLLKMIQNKEFKAAEKWATFMGK--PILLKRL 251 (547)
Q Consensus 183 ~~~~~~~~-~~~i~~~~~~~~~~~-~~~li~~f~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~--~~~~~~l 251 (547)
+..+=+.| +.||+..+.++-|.+ |..||-+|..-..++.. ..++ ..|+..+.|...++. |.-+.||
T Consensus 37 II~tle~LEkAyikD~It~~eYt~~c~rLL~QyKt~~~~~~~--~~v~-~~~~~le~F~~~y~l~cp~A~~RL 106 (109)
T 2f6m_B 37 IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNK--EEIN-KHFQSIEAFADTYNITASNAITRL 106 (109)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTT--THHH-HHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccH--HHHH-HHCCCHHHHHHHhCCCChHHHHHH
Confidence 34444555 789999999988997 89999999865443210 0122 346667777776553 4434444
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=20.48 E-value=4.2e+02 Score=32.80 Aligned_cols=162 Identities=13% Similarity=0.137 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhcccccchHHHHhhhhhccccchhHHHHH-----HHHHHHHHHhh------
Q 009000 132 KEIAAYLFLDITGGFVDHDEKLMVKILEAFDVRLTDIEKAITQLKAQNEHRFDTAKTV-----IEQYIFAMIDS------ 200 (547)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~r~~~~l~e~f~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~------ 200 (547)
..-++.+++|+.++--+.+..+=-||+|+==+.-..|++||-++.+-..++......+ +-|..-|...+
T Consensus 559 iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR 638 (1630)
T 1xi4_A 559 IQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKR 638 (1630)
T ss_pred HHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHH
Confidence 3457889999999976655666678899877777778999877666543333322111 11111111111
Q ss_pred -----chhhH--HHHHHHhhhccccchHHHHHHHhccc-------hHHHHHHHHhcCchHHHHHHhhhcchHH------H
Q 009000 201 -----QSYMT--AVSLLEHFSIRQSGESFLLKMIQNKE-------FKAAEKWATFMGKPILLKRLAEKACWDI------A 260 (547)
Q Consensus 201 -----~~~~~--~~~li~~f~~~~~~~~~l~~~~~~~~-------~~~a~~~~~~~~~~~~~~~l~~k~~wd~------a 260 (547)
....+ -++-.-+.|.+++ .+.|.+|+..|- .+.|.++....|-..+|+-+-+-.+||- +
T Consensus 639 ~~~~~~~~~~~~l~~~fg~l~~~~s-~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~s 717 (1630)
T 1xi4_A 639 AVVHTHLLNPEWLVNYFGSLSVEDS-LECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGS 717 (1630)
T ss_pred HhhccCcCCHHHHHHHHhcCCHHHH-HHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHh
Confidence 00001 1112222233222 225555664331 1358899999999998888877788886 5
Q ss_pred HHHhhcchhHHHHHHHHhhccCCHHHHHHHHHHc
Q 009000 261 EAKTKGDKRLLEYLVYLAMEAGYSEKVDELCERY 294 (547)
Q Consensus 261 ~~~~~~D~~l~~~lv~L~~~~~d~~~L~~l~~ry 294 (547)
-+-..+|+++..-.+..+.+.+...++...|++-
T Consensus 718 iv~~s~d~~vhfkyi~aa~~~~q~~everi~res 751 (1630)
T 1xi4_A 718 IVNFSQDPDVHFKYIQAACKTGQIKEVERICRES 751 (1630)
T ss_pred hccccCChHHHHHHHHHHHHhCCchhhhHHhccC
Confidence 5667779999998888888888888887777763
No 69
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=20.16 E-value=22 Score=36.34 Aligned_cols=91 Identities=10% Similarity=-0.049 Sum_probs=48.0
Q ss_pred HHHHHhhhccccchHHHHHHHhccchH---------HHHHHHHhcC-chHHHHHHhh---hcchH-HHHHHhhcchhHHH
Q 009000 207 VSLLEHFSIRQSGESFLLKMIQNKEFK---------AAEKWATFMG-KPILLKRLAE---KACWD-IAEAKTKGDKRLLE 272 (547)
Q Consensus 207 ~~li~~f~~~~~~~~~l~~~~~~~~~~---------~a~~~~~~~~-~~~~~~~l~~---k~~wd-~a~~~~~~D~~l~~ 272 (547)
-.+.++|.|....+.-+--|+-+...+ .|.++...+| ...+++.+.+ ...|+ ..++++..|+++..
T Consensus 210 ~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~k~~~~~~~~~l~~i~~~~~v~~ 289 (346)
T 2izo_A 210 EILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDINFNIDEIRGLFLNPQVVK 289 (346)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC-----------------CTTHHHHHHSCCCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhccCCCCccHHHHHHHhhCCCCCC
Confidence 344556666544333333334332222 4556666555 2333333221 22333 35666777776665
Q ss_pred HHHHHhhccCCHHHHHHHH-HHcCCc
Q 009000 273 YLVYLAMEAGYSEKVDELC-ERYSLE 297 (547)
Q Consensus 273 ~lv~L~~~~~d~~~L~~l~-~ryef~ 297 (547)
...++.+.+||.+++.+++ +++||+
T Consensus 290 ~~~~l~~~~~d~~~l~~~~~~~~~f~ 315 (346)
T 2izo_A 290 PEEALDLNEPNGEDIINILVYEHNFS 315 (346)
T ss_dssp CC-CCCCCCCCHHHHHHHTTTTTCCC
T ss_pred ccccCccCCCCHHHHHHHHHHhcCCC
Confidence 5677888999999999999 999995
No 70
>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=20.05 E-value=85 Score=28.78 Aligned_cols=46 Identities=26% Similarity=0.520 Sum_probs=28.5
Q ss_pred Hhhhcccc---chHHHHHHHhccchHHHH------HHHHhcCchHHHHHHh---hhcchH
Q 009000 211 EHFSIRQS---GESFLLKMIQNKEFKAAE------KWATFMGKPILLKRLA---EKACWD 258 (547)
Q Consensus 211 ~~f~~~~~---~~~~l~~~~~~~~~~~a~------~~~~~~~~~~~~~~l~---~k~~wd 258 (547)
+-||+-.. .++++.+.+..+++.+|. +|+.--|+. +++++ ..|.|+
T Consensus 91 fafNvG~g~~~~fStllk~lnaGd~~~A~~el~~s~W~~~~g~R--~~r~~~~~~~G~~~ 148 (171)
T 2o4w_A 91 MVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNR--AKRVITTFRTGTWD 148 (171)
T ss_dssp HHHHHCHHHHHTCHHHHHHHHTTCHHHHHHHHHSSHHHHHSHHH--HHHHHHHHHHSSSG
T ss_pred HHHhcCcccccchhHHHHHHHCcCHHHHHHHHHhccccccCCcc--cHHHHHHHHcCCcc
Confidence 33555542 458889999999998654 677664433 33333 356666
Done!