BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009001
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 258 GLLTLI-SSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAA- 315
L+T++ +++ PGLQV +G W D S G++++ G L A+ G P+ +R
Sbjct: 178 NLITVLPTANEPGLQVKAKDGSW--LDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVIN 235
Query: 316 PDFVSCSNGGGRTSLAFRLMPQGNAIL 342
P+ R SL L P + +L
Sbjct: 236 PE--GTDKTKSRISLPLFLHPHPSVVL 260
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVLC---GGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 14 PHLMCVLC---GGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSR-CTICSAEIETGSLVPNLA 453
P L VL G F+D ++ C HSF + + ++TS+ C IC ++ + N+
Sbjct: 10 PHLMCVLC---GGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 66
Query: 454 LRAAAVAIKQEDDRRLFHNAALRKR 478
I + LF N R+R
Sbjct: 67 SDKTLQDIVYKLVPGLFKNEMKRRR 91
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 486 MDPMRRSNRENGDATTTDDGLNRGVQYPF 514
MD MR+ + ENG A TT +GL GV + F
Sbjct: 342 MDEMRKKSLENGQA-TTGEGLEWGVLFGF 369
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 486 MDPMRRSNRENGDATTTDDGLNRGVQYPF 514
MD MR+ + ENG A TT +GL GV + F
Sbjct: 342 MDEMRKKSLENGQA-TTGEGLEWGVLFGF 369
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 459 VAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRE-NGDATTTDDGLNRGVQY 512
+ ++ + D+R HNA RKRR + D +R S G+ + L++ +Y
Sbjct: 4 IEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEY 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,095,297
Number of Sequences: 62578
Number of extensions: 497385
Number of successful extensions: 907
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 8
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)