Query 009001
Match_columns 547
No_of_seqs 184 out of 1373
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 19:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00273 oxidase reductase; Pr 100.0 3.7E-58 8E-63 476.3 27.7 269 84-377 2-315 (320)
2 PLN02485 oxidoreductase 100.0 1.3E-57 2.7E-62 474.1 28.5 274 84-376 4-328 (329)
3 COG3491 PcbC Isopenicillin N s 100.0 6.1E-58 1.3E-62 462.4 24.5 255 83-361 1-297 (322)
4 PLN02912 oxidoreductase, 2OG-F 100.0 1.4E-57 3.1E-62 477.2 27.4 264 85-376 39-335 (348)
5 PLN02216 protein SRG1 100.0 4E-57 8.7E-62 475.3 29.1 264 86-376 51-347 (357)
6 PLN02758 oxidoreductase, 2OG-F 100.0 4.5E-57 9.8E-62 475.6 28.1 266 85-376 50-349 (361)
7 PLN02904 oxidoreductase 100.0 8.7E-57 1.9E-61 472.8 29.1 264 85-375 49-343 (357)
8 PLN02750 oxidoreductase, 2OG-F 100.0 1.4E-56 3E-61 469.3 29.6 264 85-376 24-331 (345)
9 PLN02254 gibberellin 3-beta-di 100.0 1.5E-56 3.2E-61 471.1 29.6 263 85-376 54-347 (358)
10 PLN02276 gibberellin 20-oxidas 100.0 1.9E-56 4.2E-61 470.8 28.9 265 85-375 38-341 (361)
11 PLN02997 flavonol synthase 100.0 2.7E-56 5.8E-61 463.7 28.9 259 85-373 30-316 (325)
12 PLN02515 naringenin,2-oxogluta 100.0 3.1E-56 6.7E-61 468.7 29.5 266 85-377 35-333 (358)
13 PLN03178 leucoanthocyanidin di 100.0 2.1E-56 4.5E-61 470.5 27.5 270 84-376 44-348 (360)
14 PLN02393 leucoanthocyanidin di 100.0 3E-56 6.6E-61 469.5 27.6 267 84-373 48-347 (362)
15 PLN03002 oxidoreductase, 2OG-F 100.0 4.3E-56 9.3E-61 463.4 27.8 264 83-377 10-324 (332)
16 PLN02299 1-aminocyclopropane-1 100.0 1.6E-55 3.4E-60 457.3 28.8 268 84-376 3-297 (321)
17 PLN02156 gibberellin 2-beta-di 100.0 2.1E-55 4.5E-60 458.6 29.2 261 87-377 26-318 (335)
18 PLN02639 oxidoreductase, 2OG-F 100.0 2.3E-55 5E-60 458.8 29.2 260 85-376 35-327 (337)
19 PLN02947 oxidoreductase 100.0 2E-55 4.3E-60 464.9 27.3 263 84-375 63-360 (374)
20 PLN02704 flavonol synthase 100.0 2.1E-55 4.5E-60 458.7 27.0 258 85-372 40-331 (335)
21 PLN00417 oxidoreductase, 2OG-F 100.0 9.8E-55 2.1E-59 455.8 29.0 259 84-368 41-332 (348)
22 PLN02365 2-oxoglutarate-depend 100.0 3.3E-54 7.1E-59 443.6 27.5 255 85-376 3-288 (300)
23 KOG0143 Iron/ascorbate family 100.0 1.2E-52 2.7E-57 435.5 28.4 269 83-377 13-314 (322)
24 PLN02403 aminocyclopropanecarb 100.0 1.3E-51 2.8E-56 424.8 27.6 254 87-373 2-282 (303)
25 PLN02984 oxidoreductase, 2OG-F 100.0 2.5E-51 5.5E-56 428.8 26.2 246 85-375 36-326 (341)
26 PLN03001 oxidoreductase, 2OG-F 100.0 2.7E-44 5.9E-49 363.7 21.5 213 137-375 2-251 (262)
27 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.8 3.7E-20 8E-25 159.4 8.3 94 222-336 2-98 (98)
28 PF14226 DIOX_N: non-haem diox 99.4 8.2E-14 1.8E-18 123.3 5.0 69 88-160 1-74 (116)
29 PLN03176 flavanone-3-hydroxyla 99.4 7.7E-13 1.7E-17 119.7 9.0 66 85-151 35-100 (120)
30 PF04564 U-box: U-box domain; 99.3 1.7E-12 3.8E-17 107.4 3.9 67 399-465 3-71 (73)
31 smart00504 Ubox Modified RING 98.9 1.2E-09 2.7E-14 86.6 3.3 60 401-460 2-62 (63)
32 TIGR00599 rad18 DNA repair pro 97.3 0.00029 6.3E-09 75.8 4.9 70 395-464 21-91 (397)
33 PF11789 zf-Nse: Zinc-finger o 96.2 0.0015 3.3E-08 51.8 0.5 42 399-440 10-57 (57)
34 PLN03208 E3 ubiquitin-protein 95.9 0.0038 8.2E-08 61.1 1.7 54 401-454 19-89 (193)
35 PF13445 zf-RING_UBOX: RING-ty 95.2 0.01 2.2E-07 44.6 1.5 30 404-434 2-35 (43)
36 KOG0287 Postreplication repair 94.1 0.031 6.7E-07 58.6 2.5 73 392-464 12-88 (442)
37 PF15227 zf-C3HC4_4: zinc fing 93.5 0.039 8.3E-07 41.0 1.5 36 404-439 2-42 (42)
38 KOG1645 RING-finger-containing 93.1 0.092 2E-06 56.4 3.9 48 413-460 22-72 (463)
39 PF13640 2OG-FeII_Oxy_3: 2OG-F 93.1 0.11 2.3E-06 44.5 3.7 68 251-335 12-100 (100)
40 PF13923 zf-C3HC4_2: Zinc fing 92.3 0.072 1.5E-06 38.5 1.3 32 408-439 6-39 (39)
41 PF13920 zf-C3HC4_3: Zinc fing 91.5 0.1 2.2E-06 39.7 1.5 35 410-444 12-48 (50)
42 smart00184 RING Ring finger. E 91.3 0.13 2.8E-06 35.3 1.7 30 410-439 8-39 (39)
43 KOG0978 E3 ubiquitin ligase in 90.7 0.13 2.8E-06 59.1 1.9 55 397-451 640-696 (698)
44 PF13639 zf-RING_2: Ring finge 90.6 0.12 2.5E-06 38.3 1.0 29 411-439 14-43 (44)
45 PF12851 Tet_JBP: Oxygenase do 90.5 0.93 2E-05 43.7 7.4 70 251-335 87-170 (171)
46 cd00162 RING RING-finger (Real 90.0 0.23 5.1E-06 35.3 2.2 33 411-443 10-45 (45)
47 PF04641 Rtf2: Rtf2 RING-finge 89.6 0.17 3.6E-06 51.9 1.5 54 397-450 110-167 (260)
48 KOG2177 Predicted E3 ubiquitin 89.4 0.27 5.9E-06 48.3 2.8 69 396-466 9-78 (386)
49 PF00097 zf-C3HC4: Zinc finger 88.9 0.27 5.9E-06 35.5 1.8 32 408-439 6-41 (41)
50 PRK05467 Fe(II)-dependent oxyg 87.5 5.1 0.00011 40.5 10.5 48 268-335 130-177 (226)
51 KOG4642 Chaperone-dependent E3 87.4 0.48 1E-05 48.3 3.1 70 397-466 208-279 (284)
52 smart00702 P4Hc Prolyl 4-hydro 87.2 7.3 0.00016 36.9 11.0 160 120-335 3-178 (178)
53 COG5432 RAD18 RING-finger-cont 86.3 0.46 1E-05 49.2 2.3 76 392-467 14-93 (391)
54 TIGR00570 cdk7 CDK-activating 85.7 0.73 1.6E-05 48.4 3.5 34 414-447 22-57 (309)
55 KOG2042 Ubiquitin fusion degra 85.6 0.81 1.8E-05 54.3 4.2 66 399-464 869-936 (943)
56 PF14634 zf-RING_5: zinc-RING 85.0 0.37 8.1E-06 35.8 0.7 29 413-441 15-44 (44)
57 KOG3113 Uncharacterized conser 84.9 0.47 1E-05 48.3 1.6 51 399-450 110-164 (293)
58 TIGR02466 conserved hypothetic 82.8 15 0.00033 36.4 11.2 38 278-333 160-197 (201)
59 PF13532 2OG-FeII_Oxy_2: 2OG-F 81.5 24 0.00052 33.6 11.8 88 223-333 98-194 (194)
60 PHA02929 N1R/p28-like protein; 81.5 0.51 1.1E-05 47.9 0.3 38 413-452 195-233 (238)
61 KOG0320 Predicted E3 ubiquitin 80.1 1.1 2.3E-05 43.6 1.9 55 398-452 129-186 (187)
62 KOG2660 Locus-specific chromos 79.2 1.4 3.1E-05 46.4 2.7 69 393-461 8-82 (331)
63 PF12678 zf-rbx1: RING-H2 zinc 77.8 1.1 2.4E-05 37.1 1.1 27 414-440 46-73 (73)
64 PF14835 zf-RING_6: zf-RING of 76.8 1.5 3.3E-05 35.8 1.6 60 397-457 4-64 (65)
65 KOG0823 Predicted E3 ubiquitin 74.1 1.5 3.3E-05 44.1 1.2 46 408-453 55-104 (230)
66 PRK15401 alpha-ketoglutarate-d 73.4 21 0.00045 35.8 9.0 84 223-333 117-211 (213)
67 PF13759 2OG-FeII_Oxy_5: Putat 72.2 5.3 0.00011 34.6 4.0 38 277-332 63-100 (101)
68 COG5222 Uncharacterized conser 70.0 5.7 0.00012 41.5 4.3 60 401-460 275-338 (427)
69 KOG4628 Predicted E3 ubiquitin 69.9 2.2 4.8E-05 45.6 1.3 37 413-449 245-283 (348)
70 KOG1734 Predicted RING-contain 69.2 3.4 7.5E-05 42.6 2.5 57 396-452 225-289 (328)
71 KOG1813 Predicted E3 ubiquitin 68.2 1.7 3.7E-05 45.3 0.0 38 407-444 248-286 (313)
72 PHA02926 zinc finger-like prot 63.2 4.3 9.3E-05 41.0 1.8 36 414-451 193-235 (242)
73 COG5243 HRD1 HRD ubiquitin lig 58.0 6.3 0.00014 42.4 2.0 27 416-442 316-343 (491)
74 KOG0802 E3 ubiquitin ligase [P 56.4 5.7 0.00012 44.9 1.5 34 411-444 307-341 (543)
75 COG5152 Uncharacterized conser 55.9 4.9 0.00011 39.8 0.7 35 410-444 206-241 (259)
76 KOG0289 mRNA splicing factor [ 51.5 16 0.00035 40.2 3.9 46 405-450 5-52 (506)
77 KOG1924 RhoA GTPase effector D 51.1 30 0.00065 40.8 6.0 19 359-377 859-877 (1102)
78 COG5627 MMS21 DNA repair prote 47.3 26 0.00057 35.7 4.3 64 404-467 193-264 (275)
79 KOG2979 Protein involved in DN 44.8 23 0.00049 36.5 3.5 42 401-442 177-224 (262)
80 COG4647 AcxC Acetone carboxyla 40.0 11 0.00023 35.0 0.4 25 401-425 52-82 (165)
81 PF14311 DUF4379: Domain of un 39.4 13 0.00029 28.8 0.8 23 417-439 33-55 (55)
82 KOG3671 Actin regulatory prote 39.3 1.3E+02 0.0029 33.9 8.5 25 86-112 479-503 (569)
83 PF14447 Prok-RING_4: Prokaryo 38.1 15 0.00033 29.2 0.9 36 412-448 19-54 (55)
84 KOG0297 TNF receptor-associate 35.6 24 0.00053 38.4 2.3 62 397-458 18-83 (391)
85 COG5113 UFD2 Ubiquitin fusion 34.3 43 0.00093 38.7 3.9 67 397-463 851-919 (929)
86 KOG4275 Predicted E3 ubiquitin 33.3 8.2 0.00018 40.4 -1.7 32 410-443 310-341 (350)
87 KOG0317 Predicted E3 ubiquitin 31.3 29 0.00063 36.3 1.9 42 407-448 246-288 (293)
88 KOG0314 Predicted E3 ubiquitin 31.2 23 0.00049 39.4 1.1 66 407-472 228-295 (448)
89 PRK08333 L-fuculose phosphate 30.7 71 0.0015 30.7 4.4 38 85-128 118-155 (184)
90 KOG4172 Predicted E3 ubiquitin 30.4 19 0.00041 28.7 0.3 33 411-444 18-54 (62)
91 PF07350 DUF1479: Protein of u 30.1 31 0.00066 38.1 1.9 57 84-147 46-102 (416)
92 PRK08130 putative aldolase; Va 30.0 86 0.0019 30.9 4.9 38 85-128 125-162 (213)
93 KOG4367 Predicted Zn-finger pr 29.7 17 0.00036 40.0 -0.2 22 401-422 5-26 (699)
94 COG5540 RING-finger-containing 29.1 31 0.00066 36.5 1.6 34 411-444 337-372 (374)
95 KOG0162 Myosin class I heavy c 27.9 1.3E+02 0.0028 35.7 6.2 9 21-29 990-998 (1106)
96 KOG4159 Predicted E3 ubiquitin 27.5 61 0.0013 35.6 3.6 38 407-444 91-129 (398)
97 smart00734 ZnF_Rad18 Rad18-lik 27.2 22 0.00048 23.8 0.1 16 433-448 1-16 (26)
98 PF02891 zf-MIZ: MIZ/SP-RING z 26.4 43 0.00093 25.8 1.6 42 401-442 3-50 (50)
99 KOG1002 Nucleotide excision re 25.2 44 0.00096 37.8 2.0 47 407-453 543-595 (791)
100 PF10571 UPF0547: Uncharacteri 24.4 31 0.00067 23.2 0.4 16 409-424 10-26 (26)
101 KOG1924 RhoA GTPase effector D 23.4 2.1E+02 0.0045 34.3 6.9 24 450-473 986-1009(1102)
102 COG4068 Uncharacterized protei 23.1 93 0.002 25.2 2.9 34 433-478 8-41 (64)
103 KOG4265 Predicted E3 ubiquitin 22.7 40 0.00087 36.2 1.1 68 370-444 267-336 (349)
104 COG0315 MoaC Molybdenum cofact 22.2 27 0.00058 33.4 -0.3 30 513-542 54-83 (157)
105 TIGR02409 carnitine_bodg gamma 21.8 98 0.0021 33.1 3.9 51 85-143 107-157 (366)
106 PRK05874 L-fuculose-phosphate 21.6 1.4E+02 0.003 29.8 4.7 37 86-128 126-162 (217)
107 PF11142 DUF2917: Protein of u 21.5 97 0.0021 25.0 2.9 33 272-306 20-53 (63)
108 PF01157 Ribosomal_L21e: Ribos 21.5 41 0.00088 29.9 0.7 13 513-525 32-44 (99)
No 1
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=3.7e-58 Score=476.30 Aligned_cols=269 Identities=20% Similarity=0.267 Sum_probs=233.5
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC-------CCCc
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG-------KGSR 156 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~-------~~~r 156 (547)
+.+.||+|||+.+.+++..++++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|. ..++
T Consensus 2 ~~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~ 81 (320)
T PTZ00273 2 TRASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHR 81 (320)
T ss_pred CCCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCC
Confidence 467899999999987776678889999999999999999999999999999999999999999999832 2357
Q ss_pred Cccccc-----CC------c----------------------ccccCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhC
Q 009001 157 GVYMYR-----AG------R----------------------ALEDWDSS-P---PCMADIFRCMGKAARAALFAIARHL 199 (547)
Q Consensus 157 GYy~~~-----~G------~----------------------~~n~WP~~-P---~~m~~y~~~m~~la~~LL~~IA~~L 199 (547)
||.... .+ + .+|.||+. | +.|++|++.|.++++.||++||++|
T Consensus 82 GY~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~L 161 (320)
T PTZ00273 82 GYGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAI 161 (320)
T ss_pred CCCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 874321 00 0 13568865 3 8999999999999999999999999
Q ss_pred CCChhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCC
Q 009001 200 RLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGR 278 (547)
Q Consensus 200 GL~~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~ 278 (547)
|+++++|.+.+.+ +. +.+|++|||+++.... . ..|+++|||+|+||||+||. +||||++++|+
T Consensus 162 gl~~~~f~~~~~~-~~------~~lrl~~YP~~~~~~~-~--------~~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~ 225 (320)
T PTZ00273 162 GLREDFFDSKFME-PL------SVFRMKHYPALPQTKK-G--------RTVCGEHTDYGIITLLYQDSVGGLQVRNLSGE 225 (320)
T ss_pred CcCHHHHHHhhCC-Cc------ceeeeeecCCCCCccc-c--------CcccccccCCCeEEEEecCCCCceEEECCCCC
Confidence 9999999988866 33 5899999999875321 1 23589999999999999996 99999998999
Q ss_pred eEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCC
Q 009001 279 WYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSY 358 (547)
Q Consensus 279 Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y 358 (547)
|++|++. ||++|||+||+|++||||+|+|++|||+.+ ..+|||++||++|+.|++|.|+++++.. +.|.+|
T Consensus 226 Wi~V~p~--pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~------~~~R~Si~~F~~p~~d~~i~pl~~~~~~-~~~~~y 296 (320)
T PTZ00273 226 WMDVPPL--EGSFVVNIGDMMEMWSNGRYRSTPHRVVNT------GVERYSMPFFCEPNPNVIIKCLDNCHSE-ENPPKY 296 (320)
T ss_pred EEeCCCC--CCeEEEEHHHHHHHHHCCeeeCCCccccCC------CCCeEEEEEEEcCCCCceEecCccccCC-CCcccC
Confidence 9999999 999999999999999999999999999852 4689999999999999999999998754 478999
Q ss_pred CCccHHHHHHHHHHhhcCC
Q 009001 359 VPISVSQFMDDLSAEEDGL 377 (547)
Q Consensus 359 ~~it~ge~~~~~~~~~~~~ 377 (547)
++++++||+..++.+.|..
T Consensus 297 ~~~~~~e~~~~~~~~~~~~ 315 (320)
T PTZ00273 297 PPVRAVDWLLKRFAETYAY 315 (320)
T ss_pred CceeHHHHHHHHHHHHHHH
Confidence 9999999999999988763
No 2
>PLN02485 oxidoreductase
Probab=100.00 E-value=1.3e-57 Score=474.13 Aligned_cols=274 Identities=18% Similarity=0.218 Sum_probs=228.7
Q ss_pred CCCCcceeeCCCCCCC--C-----CchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC----
Q 009001 84 MLPRVRLSDVAPYDGA--P-----AGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG---- 152 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~--d-----~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~---- 152 (547)
+...||+|||+.+.++ + ..++++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|.
T Consensus 4 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~ 83 (329)
T PLN02485 4 DFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKM 83 (329)
T ss_pred CCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcc
Confidence 4678999999998642 1 2246778999999999999999999999999999999999999999999832
Q ss_pred ---CCCcCccccc-----------C----------C---------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHH
Q 009001 153 ---KGSRGVYMYR-----------A----------G---------RALEDWDSSP----PCMADIFRCMGKAARAALFAI 195 (547)
Q Consensus 153 ---~~~rGYy~~~-----------~----------G---------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~I 195 (547)
..++||.... + + ..+|.||..+ +.|++|+++|.+++++||++|
T Consensus 84 ~~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~ 163 (329)
T PLN02485 84 TPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGI 163 (329)
T ss_pred cCCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357873210 0 0 0245799764 899999999999999999999
Q ss_pred HHhCCCChhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC-C-CCeeEE
Q 009001 196 ARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PGLQVC 273 (547)
Q Consensus 196 A~~LGL~~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD-~-~GLQV~ 273 (547)
|++||+++++|.+.+...+. +.+|++|||+++....... ...|+++|||+|+||||+|| + +||||+
T Consensus 164 a~~Lgl~~~~f~~~~~~~~~------~~lrl~~YP~~~~~~~~~~------~~~g~~~HTD~g~lTlL~qd~~~~GLqV~ 231 (329)
T PLN02485 164 ALALGGSPDEFEGKMAGDPF------WVMRIIGYPGVSNLNGPPE------NDIGCGAHTDYGLLTLVNQDDDITALQVR 231 (329)
T ss_pred HHHcCCChHHhhhhhccCcc------ceEEEEeCCCCccccCCcc------cCcccccccCCCeEEEEeccCCCCeeeEE
Confidence 99999999998765433232 5899999999875321110 12468999999999999997 3 999999
Q ss_pred cCCCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCccccc-CC
Q 009001 274 DPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAA-GH 352 (547)
Q Consensus 274 ~~~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~-g~ 352 (547)
+++|+|++|++. ||++|||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|++|.|++.++. +.
T Consensus 232 ~~~g~Wi~V~p~--pg~~vVNiGD~L~~~TnG~~~St~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~ 304 (329)
T PLN02485 232 NLSGEWIWAIPI--PGTFVCNIGDMLKIWSNGVYQSTLHRVINN-----SPKYRVCVAFFYETNFDAAVEPLDICKEKRT 304 (329)
T ss_pred cCCCcEEECCCC--CCcEEEEhHHHHHHHHCCEeeCCCceecCC-----CCCCeEEEEEEecCCCCceeecchhhccccc
Confidence 989999999999 999999999999999999999999999964 3568999999999999999999998874 23
Q ss_pred CCCCCCCCccHHHHHHHHHHhhcC
Q 009001 353 VIPQSYVPISVSQFMDDLSAEEDG 376 (547)
Q Consensus 353 ~~p~~y~~it~ge~~~~~~~~~~~ 376 (547)
+.|++|++++|+||+..++.+.|.
T Consensus 305 ~~~~~y~~~t~~e~~~~~~~~~~~ 328 (329)
T PLN02485 305 GGSQVFKRVVYGEHLVNKVLTNFA 328 (329)
T ss_pred CCCCCCCcEeHHHHHHHHHHHhhc
Confidence 468899999999999999988763
No 3
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=6.1e-58 Score=462.40 Aligned_cols=255 Identities=23% Similarity=0.296 Sum_probs=222.0
Q ss_pred CCCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCccccc-------CCCC
Q 009001 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-------GKGS 155 (547)
Q Consensus 83 ~~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~-------~~~~ 155 (547)
|+...||+|||+.+.+.++.++.+++++|++||+++|||||+|||++.+++++++++++.||+||.|+| +..+
T Consensus 1 ~~~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~ 80 (322)
T COG3491 1 MSTRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQH 80 (322)
T ss_pred CCCCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccc
Confidence 456789999999999999889999999999999999999999999999999999999999999999983 4468
Q ss_pred cCccccc----CCc---------------------------ccccCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009001 156 RGVYMYR----AGR---------------------------ALEDWDSSP---PCMADIFRCMGKAARAALFAIARHLRL 201 (547)
Q Consensus 156 rGYy~~~----~G~---------------------------~~n~WP~~P---~~m~~y~~~m~~la~~LL~~IA~~LGL 201 (547)
+||+... .|+ ++|.||..| +.+..|+++|.+++.+||++||++|+|
T Consensus 81 rGY~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL 160 (322)
T COG3491 81 RGYTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLDL 160 (322)
T ss_pred cccccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9986541 111 245699667 899999999999999999999999999
Q ss_pred ChhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeE
Q 009001 202 RSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWY 280 (547)
Q Consensus 202 ~~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv 280 (547)
++++|+..+.+ ++ +++||+|||..+...+. .+.|+|+|+|+||||+||. +||||++++|+|+
T Consensus 161 ~~d~Fd~~~~d-~~------~~~RLlrYP~~~~~~~~----------~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl 223 (322)
T COG3491 161 PEDFFDKRTSD-PN------SVLRLLRYPSRPAREGA----------DGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWL 223 (322)
T ss_pred ChhhhhhccCC-ch------heEEEEecCCCcccccc----------cccccccCCCeEEEEEecccCCeEEecCCCCee
Confidence 99999999777 66 69999999998754332 2469999999999999997 9999999999999
Q ss_pred EeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCC
Q 009001 281 LADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVP 360 (547)
Q Consensus 281 ~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~ 360 (547)
+|+|. ||+||||+|||||+||||+|+||+|||+.| .+.+||||+||+.|+.|+.|.|+..+..+...+.++..
T Consensus 224 ~v~P~--pgtlvVNiGdmLe~~Tng~lrST~HRV~~~-----~~~~R~SipfF~~p~~Da~I~Pl~~l~~~~a~~~~~~~ 296 (322)
T COG3491 224 DVPPI--PGTLVVNIGDMLERWTNGRLRSTVHRVRNP-----PGVDRYSIPFFLEPNFDAEIAPLLPLCPEAANEPRGPG 296 (322)
T ss_pred ECCCC--CCeEEEeHHHHHHHHhCCeeccccceeecC-----CCccceeeeeeccCCCCccccccCCCCcccccCCcCCC
Confidence 99999 999999999999999999999999999974 34799999999999999999987754434334455544
Q ss_pred c
Q 009001 361 I 361 (547)
Q Consensus 361 i 361 (547)
-
T Consensus 297 t 297 (322)
T COG3491 297 T 297 (322)
T ss_pred C
Confidence 3
No 4
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.4e-57 Score=477.21 Aligned_cols=264 Identities=16% Similarity=0.231 Sum_probs=224.1
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC-------CCcC
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK-------GSRG 157 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~-------~~rG 157 (547)
..+||+|||+.+.+. .+++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|.+ ...+
T Consensus 39 ~~~iPvIDls~~~~~---~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~ 115 (348)
T PLN02912 39 GDSIPLIDLRDLHGP---NRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTR 115 (348)
T ss_pred CCCCCeEECcccCCc---CHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCccc
Confidence 467999999988653 367789999999999999999999999999999999999999999998432 1111
Q ss_pred cccc----cCC----------------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCC
Q 009001 158 VYMY----RAG----------------RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDT 213 (547)
Q Consensus 158 Yy~~----~~G----------------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~ 213 (547)
||.. ..+ ..+|.||..| +.+.+|++.|.+++.+||++||++||+++++|++++.+
T Consensus 116 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~- 194 (348)
T PLN02912 116 LSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGK- 194 (348)
T ss_pred ccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-
Confidence 1211 000 0135699765 89999999999999999999999999999999988865
Q ss_pred CCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCCcEE
Q 009001 214 PLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLL 292 (547)
Q Consensus 214 p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~lv 292 (547)
+. +.||++|||+++..+. . + |+++|||+|+||||+||. +||||+ ++|+|++|+|. +|++|
T Consensus 195 ~~------~~lrl~~YPp~~~~~~--~---~-----G~~~HtD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p~--pgalv 255 (348)
T PLN02912 195 HG------QHMAINYYPPCPQPEL--T---Y-----GLPGHKDANLITVLLQDEVSGLQVF-KDGKWIAVNPI--PNTFI 255 (348)
T ss_pred cc------ceeeeeecCCCCChhh--c---C-----CcCCCcCCCceEEEEECCCCceEEE-ECCcEEECCCc--CCeEE
Confidence 32 5899999999875321 2 3 589999999999999996 999999 58999999999 99999
Q ss_pred EEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCC-CCCCCCCccHHHHHHHHH
Q 009001 293 LITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHV-IPQSYVPISVSQFMDDLS 371 (547)
Q Consensus 293 VNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~-~p~~y~~it~ge~~~~~~ 371 (547)
||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|+.|.|++++++++. .|++|++++|+||+..++
T Consensus 256 VNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Sia~F~~p~~d~~i~pl~~~v~~~~~~p~~y~~~~~~ey~~~~~ 330 (348)
T PLN02912 256 VNLGDQMQVISNDKYKSVLHRAVVN-----TDKERISIPTFYCPSEDAVIGPAQELINEEEDSLAIYRNFTYAEYFEKFW 330 (348)
T ss_pred EEcCHHHHHHhCCEEEcccccccCC-----CCCCEEEEEEEecCCCCCeEeCCHHHhCcCCCCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999863 3568999999999999999999999886532 589999999999999988
Q ss_pred HhhcC
Q 009001 372 AEEDG 376 (547)
Q Consensus 372 ~~~~~ 376 (547)
.+.+.
T Consensus 331 ~~~~~ 335 (348)
T PLN02912 331 DTAFA 335 (348)
T ss_pred hcccC
Confidence 77654
No 5
>PLN02216 protein SRG1
Probab=100.00 E-value=4e-57 Score=475.33 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=225.8
Q ss_pred CCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCcCcc
Q 009001 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRGVY 159 (547)
Q Consensus 86 ~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~rGYy 159 (547)
..||+|||+.+.+++ .+++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++||.
T Consensus 51 ~~iPvIDls~~~~~~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~ 128 (357)
T PLN02216 51 SEIPIIDMKRLCSST--AMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFG 128 (357)
T ss_pred CCCCeEEChhccCCc--cHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccC
Confidence 579999999987644 34568899999999999999999999999999999999999999999832 2466763
Q ss_pred ccc----CC-----------------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCC
Q 009001 160 MYR----AG-----------------RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTP 214 (547)
Q Consensus 160 ~~~----~G-----------------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p 214 (547)
... .+ ..+|.||..| +.+++|+++|.+++.+||++||++|||++++|.+++.+..
T Consensus 129 ~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~ 208 (357)
T PLN02216 129 QAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDL 208 (357)
T ss_pred ccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCc
Confidence 210 00 0134599765 8999999999999999999999999999999999886521
Q ss_pred CCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC-C-CCeeEEcCCCCeEEeccCCCCCcEE
Q 009001 215 LPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PGLQVCDPNGRWYLADGGSAPGDLL 292 (547)
Q Consensus 215 ~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD-~-~GLQV~~~~G~Wv~Vpp~~~pg~lv 292 (547)
.+.||++|||+++.++. . .|+++|||+|+||||+|| . +||||+ ++|+|++|+|. ||+||
T Consensus 209 ------~~~lRl~~YPp~p~~~~--~--------~G~~~HtD~g~lTlL~q~~~v~GLQV~-~~g~Wi~V~p~--pgalv 269 (357)
T PLN02216 209 ------GQSIRMNYYPPCPQPDQ--V--------IGLTPHSDAVGLTILLQVNEVEGLQIK-KDGKWVSVKPL--PNALV 269 (357)
T ss_pred ------hheeEEeecCCCCCccc--c--------cCccCcccCceEEEEEecCCCCceeEE-ECCEEEECCCC--CCeEE
Confidence 25899999999975422 1 358999999999999994 3 999998 68999999999 99999
Q ss_pred EEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHHH
Q 009001 293 LITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSA 372 (547)
Q Consensus 293 VNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~ 372 (547)
||+||+|++||||+|||++|||+.+ ..++|||++||+.|+.|++|.|+++++++ +.|++|++++|+||+..++.
T Consensus 270 VNiGD~L~~~TNG~~kS~~HRVv~~-----~~~~R~Si~~F~~P~~d~~i~p~~~lv~~-~~p~~Y~~~t~~ey~~~~~~ 343 (357)
T PLN02216 270 VNVGDILEIITNGTYRSIEHRGVVN-----SEKERLSVATFHNTGMGKEIGPAKSLVER-QKAALFKSLTTKEYFDGLFS 343 (357)
T ss_pred EEcchhhHhhcCCeeeccCceeecC-----CCCCEEEEEEEecCCCCCeEeCcHHHcCC-CCCCCCCCcCHHHHHHHHHh
Confidence 9999999999999999999999863 35689999999999999999999998854 57899999999999999887
Q ss_pred hhcC
Q 009001 373 EEDG 376 (547)
Q Consensus 373 ~~~~ 376 (547)
+.+.
T Consensus 344 ~~~~ 347 (357)
T PLN02216 344 RELD 347 (357)
T ss_pred cccC
Confidence 6543
No 6
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.5e-57 Score=475.59 Aligned_cols=266 Identities=16% Similarity=0.180 Sum_probs=229.9
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCcCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRGV 158 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~rGY 158 (547)
..+||+|||+.+.+++.+++++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++||
T Consensus 50 ~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY 129 (361)
T PLN02758 50 PDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGY 129 (361)
T ss_pred CCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCcccc
Confidence 45799999999987666667788999999999999999999999999999999999999999999832 246787
Q ss_pred cccc----C-----------C------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCC
Q 009001 159 YMYR----A-----------G------RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDT 213 (547)
Q Consensus 159 y~~~----~-----------G------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~ 213 (547)
.... . + ..+|.||+.| +.+++|+++|.+++..||++||++||+++++|.+++.+
T Consensus 130 ~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~- 208 (361)
T PLN02758 130 GQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGE- 208 (361)
T ss_pred CcccccccccccCeeEEEEeeccCccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcC-
Confidence 4310 0 0 0134699764 89999999999999999999999999999999998866
Q ss_pred CCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC---CCeeEEcCCCCeEEeccCCCCCc
Q 009001 214 PLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS---PGLQVCDPNGRWYLADGGSAPGD 290 (547)
Q Consensus 214 p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~---~GLQV~~~~G~Wv~Vpp~~~pg~ 290 (547)
+. +.||++|||+++.++. . .|+++|||+|+||||+||. +||||++ +|+|++|+|. ||+
T Consensus 209 ~~------~~lR~~~YP~~~~~~~--~--------~g~~~HtD~g~lTlL~qd~~~v~GLQV~~-~g~Wi~V~p~--pga 269 (361)
T PLN02758 209 AV------QAVRMNYYPPCSRPDL--V--------LGLSPHSDGSALTVLQQGKGSCVGLQILK-DNTWVPVHPV--PNA 269 (361)
T ss_pred cc------ceeeeecCCCCCCccc--c--------cCccCccCCceeEEEEeCCCCCCCeeeee-CCEEEeCCCC--CCe
Confidence 33 5899999999975421 1 3589999999999999973 7999986 7999999999 999
Q ss_pred EEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHH
Q 009001 291 LLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDL 370 (547)
Q Consensus 291 lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~ 370 (547)
||||+||+|++||||+|||++|||+.+ ..++|||++||++|+.|++|.|+|+++++ +.|++|++++|+||+..+
T Consensus 270 lVVNiGD~L~~~SNG~~kS~~HRVv~~-----~~~~R~Sia~F~~P~~d~~i~pl~elv~~-~~p~~Y~~~~~~ey~~~~ 343 (361)
T PLN02758 270 LVINIGDTLEVLTNGKYKSVEHRAVTN-----KEKDRLSIVTFYAPSYEVELGPMPELVDD-ENPCKYRRYNHGEYSRHY 343 (361)
T ss_pred EEEEccchhhhhcCCeeecccceeecC-----CCCCEEEEEEEecCCCCCeEeCCHHHcCC-CCCCcCCCccHHHHHHHH
Confidence 999999999999999999999999963 35689999999999999999999998854 578999999999999999
Q ss_pred HHhhcC
Q 009001 371 SAEEDG 376 (547)
Q Consensus 371 ~~~~~~ 376 (547)
+.....
T Consensus 344 ~~~~~~ 349 (361)
T PLN02758 344 VTSKLQ 349 (361)
T ss_pred HhcccC
Confidence 876554
No 7
>PLN02904 oxidoreductase
Probab=100.00 E-value=8.7e-57 Score=472.76 Aligned_cols=264 Identities=16% Similarity=0.152 Sum_probs=225.4
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC-------CCcC
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK-------GSRG 157 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~-------~~rG 157 (547)
...||+|||+.+.+ ++.+++++++|.+||++||||+|+||||+.++++++++.+++||+||.|+|.+ .+.|
T Consensus 49 ~~~iPvIDls~~~~--~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~ 126 (357)
T PLN02904 49 TITLPVIDLSLLHD--PLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVR 126 (357)
T ss_pred CCCCCEEECcccCC--chhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCccc
Confidence 35799999998864 24567889999999999999999999999999999999999999999998432 1123
Q ss_pred cccccC----C----------------cccccCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCC
Q 009001 158 VYMYRA----G----------------RALEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDT 213 (547)
Q Consensus 158 Yy~~~~----G----------------~~~n~WP~~-P---~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~ 213 (547)
|..... + ..+|.||.. | +.+.+|+++|.+++.+||++||++||+++++|.+++..
T Consensus 127 ~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~- 205 (357)
T PLN02904 127 YGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEE- 205 (357)
T ss_pred ccccccccCCCCCCceEEeeeccCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-
Confidence 221100 0 013569976 3 99999999999999999999999999999999988765
Q ss_pred CCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCCCCeeEEcCCCCeEEeccCCCCCcEEE
Q 009001 214 PLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLL 293 (547)
Q Consensus 214 p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~~GLQV~~~~G~Wv~Vpp~~~pg~lvV 293 (547)
+. +.||++|||+++.++. . .|+++|||+|+||||+||.+||||++++|+|++|+|. ||+|||
T Consensus 206 ~~------~~lrl~~YPp~p~~~~--~--------~g~~~HtD~g~lTlL~qd~~GLQV~~~~g~Wi~V~p~--pgalVV 267 (357)
T PLN02904 206 GS------QVMAVNCYPACPEPEI--A--------LGMPPHSDFGSLTILLQSSQGLQIMDCNKNWVCVPYI--EGALIV 267 (357)
T ss_pred cc------cEEEeeecCCCCCccc--c--------cCCcCccCCCceEEEecCCCeeeEEeCCCCEEECCCC--CCeEEE
Confidence 22 5899999999975422 1 3589999999999999999999999988999999999 999999
Q ss_pred EcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 009001 294 ITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (547)
Q Consensus 294 NiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~~ 373 (547)
|+||+||+||||+|||++|||+.+ ..++|||++||+.|+.|++|.|++++++. ++|.+|++++|+||+..++.+
T Consensus 268 NiGD~Le~~TNG~~kSt~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~Pl~~~v~~-~~p~~Y~~~~~~ey~~~~~~~ 341 (357)
T PLN02904 268 QLGDQVEVMSNGIYKSVVHRVTVN-----KDYKRLSFASLHSLPLHKKISPAPELVNE-NKPAAYGEFSFNDFLDYISSN 341 (357)
T ss_pred EccHHHHHHhCCeeeccCCcccCC-----CCCCEEEEEEeecCCCCCeEeCCHHHcCC-CCCCcCCCCCHHHHHHHHHhc
Confidence 999999999999999999999963 35689999999999999999999998854 579999999999999888775
Q ss_pred hc
Q 009001 374 ED 375 (547)
Q Consensus 374 ~~ 375 (547)
..
T Consensus 342 ~~ 343 (357)
T PLN02904 342 DI 343 (357)
T ss_pred cc
Confidence 44
No 8
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.4e-56 Score=469.33 Aligned_cols=264 Identities=16% Similarity=0.186 Sum_probs=227.0
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCcCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRGV 158 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~rGY 158 (547)
...||+|||+.+. ..++++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|. ...+||
T Consensus 24 ~~~iPvIDls~~~---~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY 100 (345)
T PLN02750 24 DEEIPVIDLSVST---SHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGY 100 (345)
T ss_pred CCCCCeEECCCCC---cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccCc
Confidence 5689999999853 2347788999999999999999999999999999999999999999999842 223576
Q ss_pred cccc---------C----C-----------c--------ccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009001 159 YMYR---------A----G-----------R--------ALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLR 202 (547)
Q Consensus 159 y~~~---------~----G-----------~--------~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~ 202 (547)
+... + + . .+|.||+.| +.+++|++.|.+++..||++||++||++
T Consensus 101 ~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~ 180 (345)
T PLN02750 101 HDSEHTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGLP 180 (345)
T ss_pred CcccccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3210 0 0 0 136799764 8999999999999999999999999999
Q ss_pred hhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEc-CCCCeE
Q 009001 203 SDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCD-PNGRWY 280 (547)
Q Consensus 203 ~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~-~~G~Wv 280 (547)
+++|++++.+ +. +.+|++|||+++.... . .|+++|||+|+||||+||. +||||++ .+|+|+
T Consensus 181 ~~~f~~~~~~-~~------~~lR~~~YPp~~~~~~--~--------~g~~~HtD~g~lTlL~qd~v~GLQV~~~~~g~Wi 243 (345)
T PLN02750 181 ADRLNGYFKD-QI------SFARFNHYPPCPAPHL--A--------LGVGRHKDGGALTVLAQDDVGGLQISRRSDGEWI 243 (345)
T ss_pred HHHHHHHhcC-cc------eEEEEEecCCCCCccc--c--------cCcCCCCCCCeEEEEecCCCCceEEeecCCCeEE
Confidence 9999999876 32 6899999999874321 1 3589999999999999996 9999975 589999
Q ss_pred EeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCC
Q 009001 281 LADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVP 360 (547)
Q Consensus 281 ~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~ 360 (547)
+|++. ||+||||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|++|.|++++++. +.|.+|++
T Consensus 244 ~V~p~--pg~~vVNiGD~L~~~Tng~~~St~HRVv~~-----~~~~R~Si~~F~~P~~d~~i~pl~~~v~~-~~p~~y~p 315 (345)
T PLN02750 244 PVKPI--PDAFIINIGNCMQVWTNDLYWSAEHRVVVN-----SQKERFSIPFFFFPSHYVNIKPLDELINE-QNPPKYKE 315 (345)
T ss_pred EccCC--CCeEEEEhHHHHHHHhCCeeecccceeccC-----CCCCEEEEEEeecCCCCCeecCcHHhcCC-CCCCccCC
Confidence 99999 999999999999999999999999999963 45789999999999999999999998854 57999999
Q ss_pred ccHHHHHHHHHHhhcC
Q 009001 361 ISVSQFMDDLSAEEDG 376 (547)
Q Consensus 361 it~ge~~~~~~~~~~~ 376 (547)
++++||+..++...+.
T Consensus 316 ~~~~e~~~~~~~~~~~ 331 (345)
T PLN02750 316 FNWGKFFASRNRSDYK 331 (345)
T ss_pred ccHHHHHHHHHhcccc
Confidence 9999999988887664
No 9
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=1.5e-56 Score=471.11 Aligned_cols=263 Identities=16% Similarity=0.208 Sum_probs=220.5
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCcCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRGV 158 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~rGY 158 (547)
...||+|||+.. .++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++||
T Consensus 54 ~~~iPvIDl~~~---------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy 124 (358)
T PLN02254 54 DESIPVIDLSDP---------NALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGY 124 (358)
T ss_pred CCCCCeEeCCCH---------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccc
Confidence 457999999732 35899999999999999999999999999999999999999999842 235676
Q ss_pred ccccC----------------C----cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCC
Q 009001 159 YMYRA----------------G----RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTP 214 (547)
Q Consensus 159 y~~~~----------------G----~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p 214 (547)
..... + ...+.||..+ +.+++|+++|.+++++||++||++|||++++|.+++....
T Consensus 125 ~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~ 204 (358)
T PLN02254 125 GVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSG 204 (358)
T ss_pred cccccccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhccc
Confidence 33110 0 0124699764 8999999999999999999999999999999987663200
Q ss_pred CCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCCcEEE
Q 009001 215 LPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLL 293 (547)
Q Consensus 215 ~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~lvV 293 (547)
. .+..+.+|++|||+++.++. . .|+++|||+|+||||+||. +||||++.+|+|++|+|. ||+|||
T Consensus 205 ~--~~~~~~lRl~~YPp~p~~~~--~--------~G~~~HtD~g~lTiL~Qd~v~GLQV~~~~~~Wi~V~p~--pgalVV 270 (358)
T PLN02254 205 S--QGAQAALQLNSYPVCPDPDR--A--------MGLAPHTDSSLLTILYQSNTSGLQVFREGVGWVTVPPV--PGSLVV 270 (358)
T ss_pred c--cCcceeEEEecCCCCCCccc--c--------cCcCCccCCCcEEEEecCCCCCceEECCCCEEEEcccC--CCCEEE
Confidence 0 11236899999999975422 1 3589999999999999996 999999876689999999 999999
Q ss_pred EcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 009001 294 ITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (547)
Q Consensus 294 NiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~~ 373 (547)
|+||+||+||||+|||++|||+.+ ..++|||++||++|+.|++|.|++++++. ++|.+|++++++||+..++..
T Consensus 271 NiGD~lq~~SNg~~kS~~HRVv~~-----~~~~R~Sia~F~~P~~d~~i~pl~~lv~~-~~p~~Y~~~t~~ey~~~~~~~ 344 (358)
T PLN02254 271 NVGDLLHILSNGRFPSVLHRAVVN-----KTRHRISVAYFYGPPSDVQISPLPKLVDP-NHPPLYRSVTWKEYLATKAKH 344 (358)
T ss_pred EhHHHHHHHhCCeeccccceeecC-----CCCCEEEEEEEecCCCCcEEeCcHHhcCC-CCCcccCCcCHHHHHHHHHHh
Confidence 999999999999999999999963 45789999999999999999999999854 579999999999999988765
Q ss_pred hcC
Q 009001 374 EDG 376 (547)
Q Consensus 374 ~~~ 376 (547)
...
T Consensus 345 ~~~ 347 (358)
T PLN02254 345 FNK 347 (358)
T ss_pred hhh
Confidence 443
No 10
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=1.9e-56 Score=470.80 Aligned_cols=265 Identities=17% Similarity=0.207 Sum_probs=227.3
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCcCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRGV 158 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~rGY 158 (547)
...||+|||+.+.+++++++++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++||
T Consensus 38 ~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY 117 (361)
T PLN02276 38 ELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGY 117 (361)
T ss_pred CCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccc
Confidence 45799999999987776678889999999999999999999999999999999999999999999842 246787
Q ss_pred ccccC----C-----c---------c----------cccCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 009001 159 YMYRA----G-----R---------A----------LEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVF 206 (547)
Q Consensus 159 y~~~~----G-----~---------~----------~n~WP~~-P---~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f 206 (547)
..... + + . .|.||.. + +.+++|+..|.+++..||++||++||+++++|
T Consensus 118 ~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 197 (361)
T PLN02276 118 ASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGISLGVDRGYY 197 (361)
T ss_pred CccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 43210 0 0 0 1235543 2 68999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccC
Q 009001 207 NHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGG 285 (547)
Q Consensus 207 ~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~ 285 (547)
++++.+ +. +.+|++|||+++.++. . .|+++|||+|+||||+||. +||||+ .+|+|++|+|.
T Consensus 198 ~~~~~~-~~------~~lrl~~YP~~~~~~~--~--------~g~~~HTD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p~ 259 (361)
T PLN02276 198 RKFFED-GD------SIMRCNYYPPCQEPEL--T--------LGTGPHCDPTSLTILHQDQVGGLQVF-VDNKWRSVRPR 259 (361)
T ss_pred HHHhcC-cc------ceeeeEeCCCCCCccc--c--------cCCccccCCceeEEEEecCCCceEEE-ECCEEEEcCCC
Confidence 998866 32 5899999999865422 1 3589999999999999996 999999 68999999999
Q ss_pred CCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHH
Q 009001 286 SAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQ 365 (547)
Q Consensus 286 ~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge 365 (547)
+|++|||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|++|.|++++++. +.|.+|++++|+|
T Consensus 260 --pgalVVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Sia~F~~P~~d~~i~pl~~~v~~-~~p~~y~~~~~~e 331 (361)
T PLN02276 260 --PGALVVNIGDTFMALSNGRYKSCLHRAVVN-----SERERRSLAFFLCPKEDKVVRPPQELVDR-EGPRKYPDFTWSD 331 (361)
T ss_pred --CCeEEEEcHHHHHHHhCCccccccceeecC-----CCCCEEEEEEEecCCCCCEEeCChHhcCC-CCCCcCCCCCHHH
Confidence 999999999999999999999999999963 45789999999999999999999998854 5799999999999
Q ss_pred HHHHHHHhhc
Q 009001 366 FMDDLSAEED 375 (547)
Q Consensus 366 ~~~~~~~~~~ 375 (547)
|++.+.....
T Consensus 332 y~~~~~~~~~ 341 (361)
T PLN02276 332 LLEFTQKHYR 341 (361)
T ss_pred HHHHHHHhcc
Confidence 9987776544
No 11
>PLN02997 flavonol synthase
Probab=100.00 E-value=2.7e-56 Score=463.74 Aligned_cols=259 Identities=16% Similarity=0.200 Sum_probs=222.1
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC-----CCCcCcc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG-----KGSRGVY 159 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~-----~~~rGYy 159 (547)
...||+|||+.+. +++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++||.
T Consensus 30 ~~~IPvIDls~~~------~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY~ 103 (325)
T PLN02997 30 AVDVPVVDLSVSD------EDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGYK 103 (325)
T ss_pred CCCCCeEECCCCC------HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCccccC
Confidence 3479999999752 4568999999999999999999999999999999999999999999842 3467875
Q ss_pred ccc-CCc-----------------ccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCC
Q 009001 160 MYR-AGR-----------------ALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPA 217 (547)
Q Consensus 160 ~~~-~G~-----------------~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p~~~ 217 (547)
... .+. ..|.||..| +.+++|++.|.+++.+||++||++||+++++|.+++.+ +.
T Consensus 104 ~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~-~~-- 180 (325)
T PLN02997 104 RNYLGGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGG-ET-- 180 (325)
T ss_pred cccccCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-Cc--
Confidence 321 110 124699764 89999999999999999999999999999999998864 21
Q ss_pred CcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCCcEEEEcc
Q 009001 218 NEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITG 296 (547)
Q Consensus 218 ~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiG 296 (547)
..+.||++|||+++..+. . + |+++|||+|+||||+||. +||||+. +|+|++|+|. +|+||||+|
T Consensus 181 --~~~~lRl~~YP~~~~~~~--~---~-----g~~~HTD~g~lTlL~Qd~v~GLQV~~-~g~Wi~V~p~--pgalvVNiG 245 (325)
T PLN02997 181 --AEYVLRVNFYPPTQDTEL--V---I-----GAAAHSDMGAIALLIPNEVPGLQAFK-DEQWLDLNYI--NSAVVVIIG 245 (325)
T ss_pred --ccceeeeecCCCCCCccc--c---c-----CccCccCCCceEEEecCCCCCEEEeE-CCcEEECCCC--CCeEEEEec
Confidence 125799999999875321 1 3 589999999999999987 9999994 7899999999 999999999
Q ss_pred hhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 009001 297 KALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (547)
Q Consensus 297 D~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~~ 373 (547)
|+|++||||+|+|++|||+.+ ..++|||++||++|+.|++|.|+|+++++ +.|.+|++++|+||+..++.+
T Consensus 246 D~Le~~TNG~~kSt~HRVv~~-----~~~~R~Si~fF~~P~~d~~i~Plp~~v~~-~~p~~y~~~~~~e~l~~r~~~ 316 (325)
T PLN02997 246 DQLMRMTNGRFKNVLHRAKTD-----KERLRISWPVFVAPRADMSVGPLPELTGD-ENPPKFETLIYNDYIDQKIRG 316 (325)
T ss_pred hHHHHHhCCccccccceeeCC-----CCCCEEEEEEEecCCCCCeEeCChHHcCC-CCCCcCCCccHHHHHHHHHhh
Confidence 999999999999999999963 35689999999999999999999998854 578999999999999998774
No 12
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=3.1e-56 Score=468.66 Aligned_cols=266 Identities=16% Similarity=0.159 Sum_probs=225.7
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC------CCcCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK------GSRGV 158 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~------~~rGY 158 (547)
...||+|||+.+.+++ +++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|.+ ..+||
T Consensus 35 ~~~iPvIDls~~~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy 113 (358)
T PLN02515 35 SDEIPVISLAGIDEVG-GRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGF 113 (358)
T ss_pred CCCCCEEEChhccCCc-hHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCc
Confidence 4579999999986543 5578899999999999999999999999999999999999999999998422 24686
Q ss_pred cccc--CC-------------------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCC
Q 009001 159 YMYR--AG-------------------RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDT 213 (547)
Q Consensus 159 y~~~--~G-------------------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~ 213 (547)
.... .+ ...|.||+.+ +.+++|+++|.++++.||++|+++||+++++|.+++..
T Consensus 114 ~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~- 192 (358)
T PLN02515 114 IVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVD- 192 (358)
T ss_pred ccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcC-
Confidence 4210 00 0134699764 89999999999999999999999999999999988765
Q ss_pred CCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCC-CeEEeccCCCCCcE
Q 009001 214 PLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNG-RWYLADGGSAPGDL 291 (547)
Q Consensus 214 p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G-~Wv~Vpp~~~pg~l 291 (547)
+. +.+|++|||+++.++. . .|+++|||+|+||||+||. +||||++++| +|++|+|. ||+|
T Consensus 193 ~~------~~lrl~~YP~~~~~~~--~--------~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~Wi~Vpp~--pgal 254 (358)
T PLN02515 193 MD------QKVVVNYYPKCPQPDL--T--------LGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPV--EGAF 254 (358)
T ss_pred cc------ceEEEeecCCCCChhh--c--------cCCCCCCCCCeEEEEecCCCCceEEEECCCCeEEECCCC--CCeE
Confidence 22 5799999999864321 1 3589999999999999996 9999987655 79999999 9999
Q ss_pred EEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHH
Q 009001 292 LLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLS 371 (547)
Q Consensus 292 vVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~ 371 (547)
|||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|++|.|++ ++. ++.|++|++++|+||+..++
T Consensus 255 VVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Si~~F~~P~~d~~i~Pl~-~~~-~~~p~~y~~~t~~eyl~~~~ 327 (358)
T PLN02515 255 VVNLGDHGHYLSNGRFKNADHQAVVN-----SNCSRLSIATFQNPAPDATVYPLK-VRE-GEKPILEEPITFAEMYRRKM 327 (358)
T ss_pred EEEccHHHHHHhCCeeeeecceEECC-----CCCCEEEEEEEecCCCCCEEECCC-cCC-CCCCCcCCCcCHHHHHHHHH
Confidence 99999999999999999999999863 356899999999999999999997 443 34689999999999999999
Q ss_pred HhhcCC
Q 009001 372 AEEDGL 377 (547)
Q Consensus 372 ~~~~~~ 377 (547)
.+.+..
T Consensus 328 ~~~~~~ 333 (358)
T PLN02515 328 SRDLEL 333 (358)
T ss_pred hcccch
Confidence 887763
No 13
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=2.1e-56 Score=470.47 Aligned_cols=270 Identities=19% Similarity=0.236 Sum_probs=229.8
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC--------CCC
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG--------KGS 155 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~--------~~~ 155 (547)
....||+|||+.+.+++.+++++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|. ..+
T Consensus 44 ~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~ 123 (360)
T PLN03178 44 AGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAA 123 (360)
T ss_pred cCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCc
Confidence 345799999999988777678899999999999999999999999999999999999999999999831 236
Q ss_pred cCccccc----CC-----------------cccccCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhh
Q 009001 156 RGVYMYR----AG-----------------RALEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLL 210 (547)
Q Consensus 156 rGYy~~~----~G-----------------~~~n~WP~~-P---~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~ 210 (547)
+||.... .+ ..+|.||.. | +.+++|++.|.+++..||++||++|||++++|.+++
T Consensus 124 ~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~ 203 (360)
T PLN03178 124 QGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEV 203 (360)
T ss_pred cccccccccccccccchhHhhccccCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 7873321 01 013469976 3 899999999999999999999999999999999988
Q ss_pred cCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCC
Q 009001 211 DDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPG 289 (547)
Q Consensus 211 ~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg 289 (547)
... . ...+.+|++|||+++.++. . + |+++|||+|+||||+||. +||||+. +|+|++|+|. +|
T Consensus 204 ~~~-~---~~~~~lrl~~YP~~~~~~~--~---~-----g~~~HTD~g~lTlL~qd~v~GLQV~~-~g~Wi~V~p~--pg 266 (360)
T PLN03178 204 GGL-E---ELLLQMKINYYPRCPQPDL--A---L-----GVEAHTDVSALTFILHNMVPGLQVLY-EGKWVTAKCV--PD 266 (360)
T ss_pred cCc-c---cchhhhheeccCCCCCCcc--c---c-----CcCCccCCCceEEEeeCCCCceeEeE-CCEEEEcCCC--CC
Confidence 641 0 1225899999999875422 1 3 589999999999999986 9999995 8999999999 99
Q ss_pred cEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcE-EeCCcccccCCCCCCCCCCccHHHHHH
Q 009001 290 DLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAI-LDCSPIAAAGHVIPQSYVPISVSQFMD 368 (547)
Q Consensus 290 ~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~dav-I~Plp~~~~g~~~p~~y~~it~ge~~~ 368 (547)
++|||+||+||+||||+|||++|||+.+ ...+|||++||++|+.|+. +.|++++++. +.|.+|++++++||+.
T Consensus 267 ~lvVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Si~~F~~P~~d~~v~~pl~~~v~~-~~p~~y~p~~~~eyl~ 340 (360)
T PLN03178 267 SIVVHIGDTLEILSNGRYKSILHRGLVN-----KEKVRISWAVFCEPPKEKIILKPLPELVSK-EEPPKFPPRTFGQHVS 340 (360)
T ss_pred eEEEEccHHHHHHhCCccccccceeecC-----CCCCeEEEEEEecCCcccccccCcHHHcCC-CCcccCCCccHHHHHH
Confidence 9999999999999999999999999863 3467999999999999965 6999998754 5789999999999999
Q ss_pred HHHHhhcC
Q 009001 369 DLSAEEDG 376 (547)
Q Consensus 369 ~~~~~~~~ 376 (547)
.++...+.
T Consensus 341 ~~~~~~~~ 348 (360)
T PLN03178 341 HKLFKKPQ 348 (360)
T ss_pred HHHhcccC
Confidence 98877654
No 14
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=3e-56 Score=469.49 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=228.8
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCcC
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRG 157 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~rG 157 (547)
+.+.||+|||+.+.+++.+++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++|
T Consensus 48 ~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~G 127 (362)
T PLN02393 48 AEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEG 127 (362)
T ss_pred cCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCcccc
Confidence 456899999999987776778899999999999999999999999999999999999999999999842 24688
Q ss_pred cccccC---C------------------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcC
Q 009001 158 VYMYRA---G------------------RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDD 212 (547)
Q Consensus 158 Yy~~~~---G------------------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~ 212 (547)
|..... + ...|.||..| +.+++|+++|.+++.+||++||++||+++++|.+++.+
T Consensus 128 y~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~ 207 (362)
T PLN02393 128 YGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGG 207 (362)
T ss_pred cccccccccccccCchhheeeeecCccccchhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 732110 0 0135699764 89999999999999999999999999999999998865
Q ss_pred CCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC-C-CCeeEEcCCCCeEEeccCCCCCc
Q 009001 213 TPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PGLQVCDPNGRWYLADGGSAPGD 290 (547)
Q Consensus 213 ~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD-~-~GLQV~~~~G~Wv~Vpp~~~pg~ 290 (547)
. . ...+.+|++|||+++.++. . .|+++|||+|+||||+|+ . +||||+ ++|+|++|++. ||+
T Consensus 208 ~-~---~~~~~lRl~~YP~~p~~~~--~--------~g~~~HtD~g~lTlL~q~~~v~GLQV~-~~g~W~~V~p~--pga 270 (362)
T PLN02393 208 E-D---GVGACLRVNYYPKCPQPDL--T--------LGLSPHSDPGGMTILLPDDNVAGLQVR-RDDAWITVKPV--PDA 270 (362)
T ss_pred C-c---cccceeeeeecCCCCCccc--c--------cccccccCCceEEEEeeCCCCCcceee-ECCEEEECCCC--CCe
Confidence 2 1 1225899999999875422 1 358999999999999985 3 999999 68999999999 999
Q ss_pred EEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHH
Q 009001 291 LLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDL 370 (547)
Q Consensus 291 lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~ 370 (547)
+|||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|++|.|+|++++. ++|.+|++++++||+..+
T Consensus 271 lVVNiGD~l~~~Tng~~kSt~HRVv~~-----~~~~R~SiafF~~P~~d~~i~pl~~~v~~-~~p~~y~~~~~~ey~~~~ 344 (362)
T PLN02393 271 FIVNIGDQIQVLSNAIYKSVEHRVIVN-----SAKERVSLAFFYNPKSDLPIEPLKELVTP-DRPALYPPMTFDEYRLFI 344 (362)
T ss_pred EEEEcchhhHhhcCCeeeccceecccC-----CCCCEEEEEEEecCCCCceEeCcHHhcCC-CCCCCCCCccHHHHHHHH
Confidence 999999999999999999999999864 35689999999999999999999999854 579999999999998766
Q ss_pred HHh
Q 009001 371 SAE 373 (547)
Q Consensus 371 ~~~ 373 (547)
..+
T Consensus 345 ~~~ 347 (362)
T PLN02393 345 RTK 347 (362)
T ss_pred Hhc
Confidence 644
No 15
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.3e-56 Score=463.45 Aligned_cols=264 Identities=20% Similarity=0.308 Sum_probs=223.9
Q ss_pred CCCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCccccc-----CCCCcC
Q 009001 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-----GKGSRG 157 (547)
Q Consensus 83 ~~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~-----~~~~rG 157 (547)
+....||+|||+.. .+.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+| ...++|
T Consensus 10 ~~~~~iP~IDl~~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~G 83 (332)
T PLN03002 10 MKVSSLNCIDLAND------DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRG 83 (332)
T ss_pred CCCCCCCEEeCCch------hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCC
Confidence 34668999999942 3456889999999999999999999999999999999999999999984 234678
Q ss_pred cccccC-------------------C-----c---------ccccCCCC---h---HHHHHHHHHHHHHHHHHHHHHHHh
Q 009001 158 VYMYRA-------------------G-----R---------ALEDWDSS---P---PCMADIFRCMGKAARAALFAIARH 198 (547)
Q Consensus 158 Yy~~~~-------------------G-----~---------~~n~WP~~---P---~~m~~y~~~m~~la~~LL~~IA~~ 198 (547)
|..... + . .+|.||.. | +.+++|+++|.+++..||++||++
T Consensus 84 Y~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~ 163 (332)
T PLN03002 84 YTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALA 163 (332)
T ss_pred cCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 753200 0 0 13569974 4 899999999999999999999999
Q ss_pred CCCChhHHhh--hhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcC
Q 009001 199 LRLRSDVFNH--LLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDP 275 (547)
Q Consensus 199 LGL~~~~f~~--~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~ 275 (547)
|||++++|++ +++. + .+.||++|||+++.+. .+. .|+++|||+|+||||+||. +||||++.
T Consensus 164 Lgl~~~~f~~~~~~~~-~------~~~lrl~~YP~~~~~~-~~~--------~g~~~HTD~g~lTlL~qd~v~GLQV~~~ 227 (332)
T PLN03002 164 LDLDVGYFDRTEMLGK-P------IATMRLLRYQGISDPS-KGI--------YACGAHSDFGMMTLLATDGVMGLQICKD 227 (332)
T ss_pred cCCChHHhccccccCC-C------chheeeeeCCCCCCcc-cCc--------cccccccCCCeEEEEeeCCCCceEEecC
Confidence 9999999986 4443 2 2689999999986542 112 3589999999999999995 99999864
Q ss_pred ----CCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccC
Q 009001 276 ----NGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAG 351 (547)
Q Consensus 276 ----~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g 351 (547)
+|+|++|+|. ||+||||+||+|++||||+|+|++|||+.+ ..+|||++||++|+.|++|.|++++++.
T Consensus 228 ~~~~~g~Wi~Vpp~--pg~~VVNiGD~L~~wTng~~kSt~HRVv~~------~~~R~Sia~F~~p~~d~~i~pl~~~~~~ 299 (332)
T PLN03002 228 KNAMPQKWEYVPPI--KGAFIVNLGDMLERWSNGFFKSTLHRVLGN------GQERYSIPFFVEPNHDCLVECLPTCKSE 299 (332)
T ss_pred CCCCCCcEEECCCC--CCeEEEEHHHHHHHHhCCeeECcCCeecCC------CCCeeEEEEEecCCCCeeEecCCcccCC
Confidence 3689999999 999999999999999999999999999863 3579999999999999999999998844
Q ss_pred CCCCCCCCCccHHHHHHHHHHhhcCC
Q 009001 352 HVIPQSYVPISVSQFMDDLSAEEDGL 377 (547)
Q Consensus 352 ~~~p~~y~~it~ge~~~~~~~~~~~~ 377 (547)
+.|.+|++++++||+..++.+.|..
T Consensus 300 -~~p~~y~~~~~~e~l~~~~~~~~~~ 324 (332)
T PLN03002 300 -SDLPKYPPIKCSTYLTQRYEETHAK 324 (332)
T ss_pred -CCcccCCCccHHHHHHHHHHHHhhh
Confidence 5799999999999999999988864
No 16
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=1.6e-55 Score=457.29 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=224.8
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC---CCcCccc
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK---GSRGVYM 160 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~---~~rGYy~ 160 (547)
....||+|||+.+.. +++++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|.+ ..+||..
T Consensus 3 ~~~~iPvIDls~~~~---~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~gy~~ 79 (321)
T PLN02299 3 KMESFPVIDMEKLNG---EERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVASKGLEG 79 (321)
T ss_pred CCCCCCEEECcCCCc---ccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccCCCCccc
Confidence 356799999998853 3466789999999999999999999999999999999999999999998432 2456532
Q ss_pred ccC-----------------CcccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCc
Q 009001 161 YRA-----------------GRALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANE 219 (547)
Q Consensus 161 ~~~-----------------G~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p~~~~~ 219 (547)
... ....+.||+.| +.+.+|++.|.+++.+||++||++||+++++|++++.+. +.
T Consensus 80 ~~~~~~~~d~ke~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~----~~ 155 (321)
T PLN02299 80 VQTEVEDLDWESTFFLRHLPESNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGS----KG 155 (321)
T ss_pred ccccCCCcCHHHHcccccCCccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC----CC
Confidence 210 00124599764 899999999999999999999999999999998887531 01
Q ss_pred ccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC--CCCeeEEcCCCCeEEeccCCCCCcEEEEcch
Q 009001 220 VSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDPNGRWYLADGGSAPGDLLLITGK 297 (547)
Q Consensus 220 ~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD--~~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD 297 (547)
..+.+|++|||+++.++. . + |+++|||+|+||||+|| .+||||+ ++|+|++|+|. +|++|||+||
T Consensus 156 ~~~~lRl~~YPp~~~~~~--~---~-----G~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p~--pg~lvVNiGD 222 (321)
T PLN02299 156 PTFGTKVSNYPPCPKPDL--V---K-----GLRAHTDAGGIILLFQDDKVSGLQLL-KDGEWVDVPPM--RHSIVVNLGD 222 (321)
T ss_pred ccceeeeEecCCCCCccc--c---c-----CccCccCCCeEEEEEecCCCCCcCcc-cCCeEEECCCC--CCeEEEEeCH
Confidence 125799999999875422 1 3 47899999999999996 3999999 68999999999 9999999999
Q ss_pred hhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCC-CCCCCCCCccHHHHHHHHHHhhcC
Q 009001 298 ALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGH-VIPQSYVPISVSQFMDDLSAEEDG 376 (547)
Q Consensus 298 ~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~-~~p~~y~~it~ge~~~~~~~~~~~ 376 (547)
+|++||||+|||+.|||+.+ ...+|||++||++|+.|++|.|+|++++.+ ..|.+|++++++||+..++.+...
T Consensus 223 ~l~~~Tng~~kS~~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~pl~~~v~~~~~~p~~y~p~~~~e~l~~~~~~~~~ 297 (321)
T PLN02299 223 QLEVITNGKYKSVMHRVVAQ-----TDGNRMSIASFYNPGSDAVIYPAPALVEKEAEEEQVYPKFVFEDYMKLYAGLKFQ 297 (321)
T ss_pred HHHHHhCCceecccceeecC-----CCCCEEEEEEEecCCCCceEeCchHhcCcccCCCcCCCCCcHHHHHHHHHHcccC
Confidence 99999999999999999963 345899999999999999999999988543 258999999999999988876554
No 17
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=2.1e-55 Score=458.62 Aligned_cols=261 Identities=15% Similarity=0.174 Sum_probs=220.2
Q ss_pred CcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC----CCcCccccc
Q 009001 87 RVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK----GSRGVYMYR 162 (547)
Q Consensus 87 ~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~----~~rGYy~~~ 162 (547)
.||+|||+.. +..++|.+||++||||+|+||||+.++++++++.+++||+||.|+|.+ ..+||....
T Consensus 26 ~iPvIDls~~---------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~~ 96 (335)
T PLN02156 26 LIPVIDLTDS---------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKR 96 (335)
T ss_pred CCCcccCCCh---------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCccc
Confidence 5999999831 135789999999999999999999999999999999999999998432 234763210
Q ss_pred CC-c---------------------ccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCC-hhHHhhhhcCCCC
Q 009001 163 AG-R---------------------ALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLR-SDVFNHLLDDTPL 215 (547)
Q Consensus 163 ~G-~---------------------~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~-~~~f~~~~~~~p~ 215 (547)
.+ . ..+.||..| +.+++|+++|.+++++||++||++||++ +++|.+++.+.
T Consensus 97 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~-- 174 (335)
T PLN02156 97 IGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVK-- 174 (335)
T ss_pred cCCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCC--
Confidence 00 0 134598764 8999999999999999999999999996 47898887531
Q ss_pred CCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCCcEEEE
Q 009001 216 PANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLI 294 (547)
Q Consensus 216 ~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~lvVN 294 (547)
...+.+|++|||+++...... ..|+++|||+|+||||+||+ +||||+.++|+|++|+|. ||++|||
T Consensus 175 ---~~~~~lRl~~YP~~~~~~~~~--------~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~--pga~VVN 241 (335)
T PLN02156 175 ---ESDSCLRMNHYPEKEETPEKV--------EIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPD--HSSFFVL 241 (335)
T ss_pred ---CccceEeEEeCCCCCCCcccc--------ccCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCC--CCcEEEE
Confidence 112689999999987532211 24589999999999999986 999999888999999999 9999999
Q ss_pred cchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHHHhh
Q 009001 295 TGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEE 374 (547)
Q Consensus 295 iGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~~~ 374 (547)
+||+|++||||+|+|+.|||+.+ ..++|||++||+.|+.|++|.|+++++.+ ++|.+|++++++||+..++...
T Consensus 242 iGD~l~~wTNg~~kSt~HRVv~~-----~~~~R~SiafF~~P~~d~~i~pl~~~v~~-~~p~~y~p~~~~ey~~~~~~~~ 315 (335)
T PLN02156 242 VGDTLQVMTNGRFKSVKHRVVTN-----TKRSRISMIYFAGPPLSEKIAPLSCLVPK-QDDCLYNEFTWSQYKLSAYKTK 315 (335)
T ss_pred hHHHHHHHhCCeeeccceeeecC-----CCCCEEEEEEeecCCCCCEEeCChHhcCC-CCCccCCCccHHHHHHHHHhcc
Confidence 99999999999999999999963 35689999999999999999999999855 4799999999999999999988
Q ss_pred cCC
Q 009001 375 DGL 377 (547)
Q Consensus 375 ~~~ 377 (547)
+..
T Consensus 316 ~~~ 318 (335)
T PLN02156 316 LGD 318 (335)
T ss_pred CCC
Confidence 775
No 18
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.3e-55 Score=458.78 Aligned_cols=260 Identities=18% Similarity=0.249 Sum_probs=220.7
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC--------CCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK--------GSR 156 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~--------~~r 156 (547)
...||+|||+.. .+++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|.. ..+
T Consensus 35 ~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~ 108 (337)
T PLN02639 35 CENVPVIDLGSP------DRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMR 108 (337)
T ss_pred CCCCCeEECCCc------cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCccc
Confidence 467999999853 367789999999999999999999999999999999999999999998422 112
Q ss_pred Ccccc---cCC----------------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCC
Q 009001 157 GVYMY---RAG----------------RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDT 213 (547)
Q Consensus 157 GYy~~---~~G----------------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~ 213 (547)
+|... ..+ ..+|.||..| +.+++|++.|.+++.+||++||++|||++++|++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~- 187 (337)
T PLN02639 109 LSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGE- 187 (337)
T ss_pred cccccccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC-
Confidence 21110 000 0135699764 89999999999999999999999999999999988765
Q ss_pred CCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC--CCeeEEcCCCCeEEeccCCCCCcE
Q 009001 214 PLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS--PGLQVCDPNGRWYLADGGSAPGDL 291 (547)
Q Consensus 214 p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~--~GLQV~~~~G~Wv~Vpp~~~pg~l 291 (547)
.. +.+|++|||+++..+. . .|+++|||+|+||||+||. +||||+ ++|+|++|+|. ||++
T Consensus 188 ~~------~~lrl~~YP~~~~~~~--~--------~g~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p~--pg~l 248 (337)
T PLN02639 188 QG------QHMAVNYYPPCPEPEL--T--------YGLPAHTDPNALTILLQDQQVAGLQVL-KDGKWVAVNPH--PGAF 248 (337)
T ss_pred Cc------cEEEEEcCCCCCCccc--c--------cCCCCCcCCCceEEEEecCCcCceEee-cCCeEEeccCC--CCeE
Confidence 22 5899999999875321 1 3589999999999999973 999999 58999999999 9999
Q ss_pred EEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHH
Q 009001 292 LLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLS 371 (547)
Q Consensus 292 vVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~ 371 (547)
|||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|++|.|++++++. +.|++|++++++||+..++
T Consensus 249 VVNiGD~L~~~TNG~~kSt~HRVv~~-----~~~~R~Sia~F~~p~~d~~i~pl~~~~~~-~~p~~y~p~~~~e~~~~~~ 322 (337)
T PLN02639 249 VINIGDQLQALSNGRYKSVWHRAVVN-----TDKERMSVASFLCPCDDAVISPAKKLTDD-GTAAVYRDFTYAEYYKKFW 322 (337)
T ss_pred EEechhHHHHHhCCeeeccCcccccC-----CCCCEEEEEEEecCCCCceEeCchHHcCC-CCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999863 35689999999999999999999999854 5799999999999999888
Q ss_pred HhhcC
Q 009001 372 AEEDG 376 (547)
Q Consensus 372 ~~~~~ 376 (547)
.+...
T Consensus 323 ~~~~~ 327 (337)
T PLN02639 323 SRNLD 327 (337)
T ss_pred hccCC
Confidence 76554
No 19
>PLN02947 oxidoreductase
Probab=100.00 E-value=2e-55 Score=464.87 Aligned_cols=263 Identities=19% Similarity=0.230 Sum_probs=222.0
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC-------CCc
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK-------GSR 156 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~-------~~r 156 (547)
...+||+|||+.+.+ ..+.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|.+ ...
T Consensus 63 ~~~~iPvIDls~l~~---~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~ 139 (374)
T PLN02947 63 GNLKLPVIDLAELRG---SNRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPV 139 (374)
T ss_pred CCCCCCeEECcccCC---ccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCe
Confidence 355799999998864 2467789999999999999999999999999999999999999999998422 234
Q ss_pred Cccccc----CC------------c----ccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCC---hhHHhhh
Q 009001 157 GVYMYR----AG------------R----ALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLR---SDVFNHL 209 (547)
Q Consensus 157 GYy~~~----~G------------~----~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~---~~~f~~~ 209 (547)
||+... .+ . .++.||+.| +.+++|+++|.+++.+||++||++||++ .++|.+.
T Consensus 140 gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~ 219 (374)
T PLN02947 140 RYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEE 219 (374)
T ss_pred eeccccccccccccCceeceeeecCCcccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHH
Confidence 543210 00 0 134699765 8999999999999999999999999997 4566666
Q ss_pred hcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCC
Q 009001 210 LDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAP 288 (547)
Q Consensus 210 ~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~p 288 (547)
+.+ +. +.+|++|||+++.++. . + |+++|||+|+||||+||. +||||++ +|+|++|+|. |
T Consensus 220 ~~~-~~------~~lrln~YPp~p~~~~--~---~-----G~~~HTD~g~lTlL~Qd~v~GLQV~~-~g~Wi~V~p~--p 279 (374)
T PLN02947 220 FEA-GS------QMMVVNCYPACPEPEL--T---L-----GMPPHSDYGFLTLLLQDEVEGLQIMH-AGRWVTVEPI--P 279 (374)
T ss_pred hcC-cc------eeeeeecCCCCCCccc--c---c-----CCCCccCCCceEEEEecCCCCeeEeE-CCEEEeCCCC--C
Confidence 654 22 5899999999975422 1 3 589999999999999986 9999997 8999999999 9
Q ss_pred CcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHH
Q 009001 289 GDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMD 368 (547)
Q Consensus 289 g~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~ 368 (547)
|+||||+||+|++||||+|||++|||+.+ ..++|||++||+.|+.|++|.|++++++. ++|++|++++|+||+.
T Consensus 280 ga~VVNvGD~Lq~~SNG~~kS~~HRVv~~-----~~~~R~Sia~F~~P~~d~~i~Pl~~lv~~-~~p~~Y~~~~~~ey~~ 353 (374)
T PLN02947 280 GSFVVNVGDHLEIFSNGRYKSVLHRVRVN-----STKPRISVASLHSLPFERVVGPAPELVDE-QNPRRYMDTDFATFLA 353 (374)
T ss_pred CeEEEEeCceeeeeeCCEEeccccccccC-----CCCCEEEEEEEecCCCCCEEeCChHhcCC-CCCCcCCCCCHHHHHH
Confidence 99999999999999999999999999863 45789999999999999999999999854 5799999999999998
Q ss_pred HHHHhhc
Q 009001 369 DLSAEED 375 (547)
Q Consensus 369 ~~~~~~~ 375 (547)
..+....
T Consensus 354 ~~~~~~~ 360 (374)
T PLN02947 354 YLASAEG 360 (374)
T ss_pred HHHHhcc
Confidence 8776544
No 20
>PLN02704 flavonol synthase
Probab=100.00 E-value=2.1e-55 Score=458.74 Aligned_cols=258 Identities=14% Similarity=0.178 Sum_probs=220.0
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC--------CCCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG--------KGSR 156 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~--------~~~r 156 (547)
..+||+|||+.. .+++++++|.+||+++|||+|+||||+.++++++++.+++||+||.|+|. ..++
T Consensus 40 ~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~ 113 (335)
T PLN02704 40 DPQVPTIDLSDP------DEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIE 113 (335)
T ss_pred CCCCCeEECCCc------cHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccc
Confidence 457999999964 23567899999999999999999999999999999999999999999832 2357
Q ss_pred Cccccc----CCc-----------------ccccCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhc
Q 009001 157 GVYMYR----AGR-----------------ALEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLD 211 (547)
Q Consensus 157 GYy~~~----~G~-----------------~~n~WP~~-P---~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~ 211 (547)
||.... .+. ..|.||.. | +.+.+|++.|.+++.+||++||++||+++++|.+++.
T Consensus 114 Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~ 193 (335)
T PLN02704 114 GYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVG 193 (335)
T ss_pred cccccccccccCcccceeeeEeeecCCcccchhhCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 874321 010 02358865 3 8999999999999999999999999999999998775
Q ss_pred CCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCCc
Q 009001 212 DTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGD 290 (547)
Q Consensus 212 ~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~ 290 (547)
+.. ..+.+|++|||+++..+. . .|+++|||+|+||||+||. +||||+ ++|+|++|+|. ||+
T Consensus 194 ~~~-----~~~~lrl~~YP~~~~~~~--~--------~g~~~HtD~g~lTlL~qd~v~GLQV~-~~g~Wi~V~p~--pg~ 255 (335)
T PLN02704 194 GEE-----LEYLLKINYYPPCPRPDL--A--------LGVVAHTDMSAITILVPNEVQGLQVF-RDDHWFDVKYI--PNA 255 (335)
T ss_pred CCc-----hhhhhhhhcCCCCCCccc--c--------cCccCccCCcceEEEecCCCCceeEe-ECCEEEeCCCC--CCe
Confidence 421 125799999999864321 1 3589999999999999997 999998 58999999999 999
Q ss_pred EEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHH
Q 009001 291 LLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDL 370 (547)
Q Consensus 291 lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~ 370 (547)
||||+||+|++||||+|||++|||+.+ ..++|||++||++|+.|++|.|++++++. ++|++|++++++||+..+
T Consensus 256 lvVNvGD~L~~~TNg~~kSt~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~pl~~~~~~-~~p~~Y~~~~~~e~~~~~ 329 (335)
T PLN02704 256 LVIHIGDQIEILSNGKYKSVLHRTTVN-----KEKTRMSWPVFLEPPSELAVGPLPKLINE-DNPPKFKTKKFKDYVYCK 329 (335)
T ss_pred EEEEechHHHHHhCCeeecccceeecC-----CCCCeEEEEEEecCCCCceEeCChHhcCC-CCCccCCCCCHHHHHHHH
Confidence 999999999999999999999999963 45689999999999999999999999855 579999999999999888
Q ss_pred HH
Q 009001 371 SA 372 (547)
Q Consensus 371 ~~ 372 (547)
+.
T Consensus 330 ~~ 331 (335)
T PLN02704 330 LN 331 (335)
T ss_pred Hh
Confidence 76
No 21
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=9.8e-55 Score=455.85 Aligned_cols=259 Identities=15% Similarity=0.192 Sum_probs=217.6
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCcC
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSRG 157 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~rG 157 (547)
+..+||+|||+.+.++++.. ++.+++|.+||+++|||||+||||+.++++++++.+++||+||.|+|. ..++|
T Consensus 41 ~~~~IPvIDls~~~~~~~~~-~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~G 119 (348)
T PLN00417 41 PEMDIPAIDLSLLLSSSDDG-REELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQG 119 (348)
T ss_pred cCCCCCeEEChhhcCCCchH-HHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccc
Confidence 45689999999987765443 345689999999999999999999999999999999999999999832 24678
Q ss_pred ccccc--C--C-----c------------ccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcC
Q 009001 158 VYMYR--A--G-----R------------ALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDD 212 (547)
Q Consensus 158 Yy~~~--~--G-----~------------~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~ 212 (547)
|.... . + + ..|.||..| +.+.+|+.+|.+++.+||++||++||+++++|.+++.+
T Consensus 120 Y~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~ 199 (348)
T PLN00417 120 YGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGE 199 (348)
T ss_pred cccccccccCCCcCccceeecccCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 73311 0 0 0 124599764 89999999999999999999999999999999888765
Q ss_pred CCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC--CCCeeEEcCCCCeEEeccCCCCCc
Q 009001 213 TPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDPNGRWYLADGGSAPGD 290 (547)
Q Consensus 213 ~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD--~~GLQV~~~~G~Wv~Vpp~~~pg~ 290 (547)
.. .+.+|++|||+++..+. . .|+++|||+|+||||+|| .+||||+ ++|+|++|+|. ||+
T Consensus 200 ~~------~~~lRl~~YPp~~~~~~--~--------~g~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p~--pg~ 260 (348)
T PLN00417 200 NA------TMDTRFNMYPPCPRPDK--V--------IGVKPHADGSAFTLLLPDKDVEGLQFL-KDGKWYKAPIV--PDT 260 (348)
T ss_pred Cc------cceeeeeecCCCCCccc--c--------cCCcCccCCCceEEEEecCCCCceeEe-ECCeEEECCCC--CCc
Confidence 21 14699999999875422 1 358999999999999996 3999998 58999999999 999
Q ss_pred EEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHH
Q 009001 291 LLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMD 368 (547)
Q Consensus 291 lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~ 368 (547)
+|||+||+|++||||+|+|++|||+.+ ...+|||++||++|+.|++|+|++++++. ++|++|+++++++...
T Consensus 261 lVVNiGD~Le~~Tng~~kSt~HRVv~~-----~~~~R~Si~fF~~P~~d~~i~pl~~~v~~-~~p~~Y~~~~~~~~~~ 332 (348)
T PLN00417 261 ILINVGDQMEIMSNGIYKSPVHRVVTN-----REKERISVATFCIPGADKEIQPVDGLVSE-ARPRLYKTVKKYVELF 332 (348)
T ss_pred EEEEcChHHHHHhCCeecccceEEecC-----CCCCEEEEEEEecCCCCceecCchHhcCC-CCCCCCCCHHHHHHHH
Confidence 999999999999999999999999964 34689999999999999999999998854 5799999999555443
No 22
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=3.3e-54 Score=443.56 Aligned_cols=255 Identities=18% Similarity=0.213 Sum_probs=214.9
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC-----CCcCcc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK-----GSRGVY 159 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~-----~~rGYy 159 (547)
...||+|||+.+. +.+++|.+||++||||||+||||+.++++++++.+++||+||.|+|.+ ..+||.
T Consensus 3 ~~~iPvIDls~~~--------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~GY~ 74 (300)
T PLN02365 3 EVNIPTIDLEEFP--------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYM 74 (300)
T ss_pred cCCCCEEEChhhH--------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCCCC
Confidence 4569999999872 125899999999999999999999999999999999999999998432 357874
Q ss_pred cccCC-------------c--ccccCC----CCh---HHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhHHhhhhcCCCCC
Q 009001 160 MYRAG-------------R--ALEDWD----SSP---PCMADIFRCMGKAARAALFAIARHLRL-RSDVFNHLLDDTPLP 216 (547)
Q Consensus 160 ~~~~G-------------~--~~n~WP----~~P---~~m~~y~~~m~~la~~LL~~IA~~LGL-~~~~f~~~~~~~p~~ 216 (547)
..... . ..+.|| ..| +.|++|+++|.+++.+||++||++||+ ++++|++..
T Consensus 75 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~~------ 148 (300)
T PLN02365 75 APSEVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGWP------ 148 (300)
T ss_pred CcCCCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhcc------
Confidence 32100 0 012233 334 899999999999999999999999999 888887631
Q ss_pred CCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC--CCCeeEEcC-CCCeEEeccCCCCCcEEE
Q 009001 217 ANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDP-NGRWYLADGGSAPGDLLL 293 (547)
Q Consensus 217 ~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD--~~GLQV~~~-~G~Wv~Vpp~~~pg~lvV 293 (547)
+.+|++|||+++... +. .|+++|||+|+||||+|| .+||||+++ +|+|++|+|. ||++||
T Consensus 149 -----~~lr~~~YP~~p~~~--~~--------~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~--pga~vV 211 (300)
T PLN02365 149 -----SQFRINKYNFTPETV--GS--------SGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPL--PGTLLV 211 (300)
T ss_pred -----cceeeeecCCCCCcc--cc--------ccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCC--CCeEEE
Confidence 479999999986432 12 358999999999999997 399999987 7899999999 999999
Q ss_pred EcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHHHh
Q 009001 294 ITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373 (547)
Q Consensus 294 NiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~~ 373 (547)
|+||+|++||||+|+|++|||+.+ ...+|||++||+.|+.|++|.|++++++. +.|.+|++++++||+..++..
T Consensus 212 NiGD~l~~~TNG~~~St~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~p~~~~v~~-~~p~~y~~~~~~e~~~~~~~~ 285 (300)
T PLN02365 212 NLGDVATAWSNGRLCNVKHRVQCK-----EATMRISIASFLLGPKDDDVEAPPEFVDA-EHPRLYKPFTYEDYRKLRLST 285 (300)
T ss_pred EhhHHHHHHhCCceecccceeEcC-----CCCCEEEEEEEecCCCCCeEeCCHHHcCC-CCCccCCCccHHHHHHHHHhc
Confidence 999999999999999999999963 35689999999999999999999998854 578999999999999988876
Q ss_pred hcC
Q 009001 374 EDG 376 (547)
Q Consensus 374 ~~~ 376 (547)
.+.
T Consensus 286 ~~~ 288 (300)
T PLN02365 286 KLH 288 (300)
T ss_pred ccc
Confidence 554
No 23
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=1.2e-52 Score=435.54 Aligned_cols=269 Identities=17% Similarity=0.219 Sum_probs=229.7
Q ss_pred CCCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCccccc-----CC-CCc
Q 009001 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-----GK-GSR 156 (547)
Q Consensus 83 ~~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~-----~~-~~r 156 (547)
++...||+|||+.+...+. .+..++++|++||++||||||+||||+.++++++++.+++||+||.|+| .. .+.
T Consensus 13 ~~~~~iPvIDls~~~~~~~-~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~ 91 (322)
T KOG0143|consen 13 TSELDIPVIDLSCLDSDDP-GREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYR 91 (322)
T ss_pred ccCCCcCeEECCCCCCcch-hHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCcc
Confidence 3467899999998876554 6788899999999999999999999999999999999999999999983 22 357
Q ss_pred CcccccCCc---------------------ccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhc
Q 009001 157 GVYMYRAGR---------------------ALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLD 211 (547)
Q Consensus 157 GYy~~~~G~---------------------~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~ 211 (547)
||....... ..+.||+.| +.|++|.+++.+++..|+++|+++||++.+++.+.+.
T Consensus 92 gY~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~ 171 (322)
T KOG0143|consen 92 GYGTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFG 171 (322)
T ss_pred cccccccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhC
Confidence 764321110 123599876 8999999999999999999999999999877777776
Q ss_pred CCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC-C-CCeeEEcCCCCeEEeccCCCCC
Q 009001 212 DTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PGLQVCDPNGRWYLADGGSAPG 289 (547)
Q Consensus 212 ~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD-~-~GLQV~~~~G~Wv~Vpp~~~pg 289 (547)
.. ....+|+++||+++.++.. +|+++|||.|+||||.|| + +||||++.+|+|++|+|. ||
T Consensus 172 ~~------~~~~~r~n~Yp~cp~pe~~----------lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~--p~ 233 (322)
T KOG0143|consen 172 ET------GGQVMRLNYYPPCPEPELT----------LGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPI--PG 233 (322)
T ss_pred Cc------cceEEEEeecCCCcCcccc----------ccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCC--CC
Confidence 52 2358999999999876432 358999999999999998 4 999999768999999999 99
Q ss_pred cEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHH
Q 009001 290 DLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDD 369 (547)
Q Consensus 290 ~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~ 369 (547)
+||||+||+|++||||+|||+.|||+. | ..++|||+|||+.|..|++|.|+++++.++ |++|+++++.+|+..
T Consensus 234 a~vVNiGD~l~~lSNG~ykSv~HRV~~----n-~~~~R~Sia~F~~p~~d~~i~p~~elv~~~--~~~Y~~~~~~~y~~~ 306 (322)
T KOG0143|consen 234 AFVVNIGDMLQILSNGRYKSVLHRVVV----N-GEKERISVAFFVFPPLDKVIGPPEELVDEE--PPKYKPFTFGDYLEF 306 (322)
T ss_pred CEEEEcccHHhHhhCCcccceEEEEEe----C-CCCceEEEEEEecCCCCceecChhhhCCCC--CCccCcEEHHHHHHH
Confidence 999999999999999999999999997 3 345699999999999999999999998653 777999999999998
Q ss_pred HHHhhcCC
Q 009001 370 LSAEEDGL 377 (547)
Q Consensus 370 ~~~~~~~~ 377 (547)
.+......
T Consensus 307 ~~~~~~~~ 314 (322)
T KOG0143|consen 307 YFSKKLQG 314 (322)
T ss_pred HHhccccC
Confidence 88876554
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=1.3e-51 Score=424.82 Aligned_cols=254 Identities=18% Similarity=0.229 Sum_probs=209.9
Q ss_pred CcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC---CC-----CcCc
Q 009001 87 RVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG---KG-----SRGV 158 (547)
Q Consensus 87 ~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~---~~-----~rGY 158 (547)
+||+|||+.+.. +.+++++++|.+||++||||||+||||+.++++++++.+++||+||.+++- .. .+||
T Consensus 2 ~iPvIDls~~~~---~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~~~~~~~~~~~~~ 78 (303)
T PLN02403 2 EIPVIDFDQLDG---EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYESEIAKALDNEGK 78 (303)
T ss_pred CCCeEeCccCCc---ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccccCcccccCC
Confidence 599999998853 346788999999999999999999999999999999999999999998731 11 1221
Q ss_pred ccc-----------cCCcccccCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCcccce
Q 009001 159 YMY-----------RAGRALEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSS 223 (547)
Q Consensus 159 y~~-----------~~G~~~n~WP~~-P---~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p~~~~~~~s~ 223 (547)
-.. ......|.||+. | +.+++|+++|.+++..||++||++||+++++|.+++.+.. ...+.
T Consensus 79 ~~~~d~kE~~~~~~~p~~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~----~~~~~ 154 (303)
T PLN02403 79 TSDVDWESSFFIWHRPTSNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNK----GPSVG 154 (303)
T ss_pred CCCccHhhhcccccCCccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCC----Cccce
Confidence 000 000123569976 3 8999999999999999999999999999999988876310 11246
Q ss_pred eeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC--CCCeeEEcCCCCeEEeccCCCC-CcEEEEcchhhh
Q 009001 224 VLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD--SPGLQVCDPNGRWYLADGGSAP-GDLLLITGKALS 300 (547)
Q Consensus 224 lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD--~~GLQV~~~~G~Wv~Vpp~~~p-g~lvVNiGD~Le 300 (547)
+|++|||+++.++. . .|+++|||+|+||||+|+ .+||||+ ++|+|++|+|. | |++|||+||+|+
T Consensus 155 lrl~~YP~~~~~~~--~--------~G~~~HtD~g~lTlL~q~~~v~GLqV~-~~g~Wi~V~p~--p~~~lvVNvGD~L~ 221 (303)
T PLN02403 155 TKVAKYPECPRPEL--V--------RGLREHTDAGGIILLLQDDQVPGLEFL-KDGKWVPIPPS--KNNTIFVNTGDQLE 221 (303)
T ss_pred eeeEcCCCCCCccc--c--------cCccCccCCCeEEEEEecCCCCceEec-cCCeEEECCCC--CCCEEEEEehHHHH
Confidence 99999999864321 1 247899999999999996 3999997 68999999999 9 699999999999
Q ss_pred hhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCC-CccHHHHHHHHHHh
Q 009001 301 HATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV-PISVSQFMDDLSAE 373 (547)
Q Consensus 301 ~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~-~it~ge~~~~~~~~ 373 (547)
+||||+|+|++|||+.+ ..++|||++||++|+.|++|.|+++++ |+ +++|+||+..+...
T Consensus 222 ~~Tng~~~S~~HRVv~~-----~~~~R~Si~~F~~p~~d~~i~pl~~~~--------~~~~~~~~eyl~~~~~~ 282 (303)
T PLN02403 222 VLSNGRYKSTLHRVMAD-----KNGSRLSIATFYNPAGDAIISPAPKLL--------YPSNYRFQDYLKLYSTT 282 (303)
T ss_pred HHhCCeeecccceeecC-----CCCCEEEEEEEEcCCCCCeEeCchhhC--------CCCCccHHHHHHHHHHh
Confidence 99999999999999963 356799999999999999999999765 23 49999999888763
No 25
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.5e-51 Score=428.84 Aligned_cols=246 Identities=17% Similarity=0.238 Sum_probs=203.8
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCCC-----CcCcc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKG-----SRGVY 159 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~~-----~rGYy 159 (547)
...||+|||+.+. .++|.+||++||||||+||||+.++++++++.+++||+||.|+|.+. ..||+
T Consensus 36 ~~~IPvIDls~~~----------~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~ 105 (341)
T PLN02984 36 DIDIPVIDMECLD----------MEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYF 105 (341)
T ss_pred cCCCCeEeCcHHH----------HHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccc
Confidence 5569999999761 47999999999999999999999999999999999999999984331 12222
Q ss_pred cc-----cC------C----c---------c------cccCC-C---Ch---HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009001 160 MY-----RA------G----R---------A------LEDWD-S---SP---PCMADIFRCMGKAARAALFAIARHLRLR 202 (547)
Q Consensus 160 ~~-----~~------G----~---------~------~n~WP-~---~P---~~m~~y~~~m~~la~~LL~~IA~~LGL~ 202 (547)
.. .. + . . .+.|| . .| +.+++|+++|.+++..||++||++||++
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~ 185 (341)
T PLN02984 106 WGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLE 185 (341)
T ss_pred cCcccccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 10 00 0 0 0 01232 2 23 8999999999999999999999999999
Q ss_pred --hhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCe
Q 009001 203 --SDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRW 279 (547)
Q Consensus 203 --~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~W 279 (547)
+++|.+++.+ +. +.+|++|||+++..+. . .|+++|||+|+||||+||. +||||+ .+|+|
T Consensus 186 ~~~~~f~~~~~~-~~------~~lRl~~YPp~~~~~~--~--------~g~~aHTD~g~lTlL~Qd~v~GLQV~-~~g~W 247 (341)
T PLN02984 186 LSGDQKMSYLSE-ST------GVIRVYRYPQCSNEAE--A--------PGMEVHTDSSVISILNQDEVGGLEVM-KDGEW 247 (341)
T ss_pred cchhHHHHHhcC-cc------ceEEEEeCCCCCCccc--c--------cCccCccCCCceEEEEeCCCCCeeEe-eCCce
Confidence 9999998866 32 5899999999875321 1 3589999999999999986 999998 58999
Q ss_pred EEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCC
Q 009001 280 YLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV 359 (547)
Q Consensus 280 v~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~ 359 (547)
++|+|. ||+||||+||+|++||||+|||++|||+.+ + ..++|||++||++|+.|++|.| .+|+
T Consensus 248 v~V~p~--pgalVVNiGD~Le~wTNg~~kSt~HRVv~~---~-~~~~R~Sia~F~~P~~d~~i~p-----------~~y~ 310 (341)
T PLN02984 248 FNVKPI--ANTLVVNLGDMMQVISDDEYKSVLHRVGKR---N-KKKERYSICYFVFPEEDCVIKS-----------SKYK 310 (341)
T ss_pred EECCCC--CCeEEEECChhhhhhcCCeeeCCCCccccC---C-CCCCeEEEEEEecCCCCCEEcc-----------CCcC
Confidence 999999 999999999999999999999999999642 2 3568999999999999999863 5799
Q ss_pred CccHHHHHHHHHHhhc
Q 009001 360 PISVSQFMDDLSAEED 375 (547)
Q Consensus 360 ~it~ge~~~~~~~~~~ 375 (547)
+++++||+..++....
T Consensus 311 p~t~~e~l~~~~~~~~ 326 (341)
T PLN02984 311 PFTYSDFEAQVQLDVK 326 (341)
T ss_pred cccHHHHHHHHHhhhh
Confidence 9999999998876654
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.7e-44 Score=363.66 Aligned_cols=213 Identities=18% Similarity=0.266 Sum_probs=179.6
Q ss_pred HHHHHHHhc-CcccccC--------CCCcCcccccC-----Cc------------------ccccCCCCh----HHHHHH
Q 009001 137 LEAARLYFR-TKSQTVG--------KGSRGVYMYRA-----GR------------------ALEDWDSSP----PCMADI 180 (547)
Q Consensus 137 ~~~ar~FF~-LP~Ee~~--------~~~rGYy~~~~-----G~------------------~~n~WP~~P----~~m~~y 180 (547)
.+.+++||+ ||.|+|. ..++||..... +. .+|.||+.| +.+++|
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y 81 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEY 81 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHH
Confidence 578999997 9999831 13678722110 00 124599764 899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccE
Q 009001 181 FRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLL 260 (547)
Q Consensus 181 ~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlL 260 (547)
+.+|.+++++||++||++||+++++|++++.+ +. +.+|++|||+++.++. . + |+++|||+|+|
T Consensus 82 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~~------~~lrl~~YP~~~~~~~--~---~-----g~~~HtD~g~l 144 (262)
T PLN03001 82 GDCMKALAQKLLAFISESLGLPCSCIEDAVGD-FY------QNITVSYYPPCPQPEL--T---L-----GLQSHSDFGAI 144 (262)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC-cc------hhheeecCCCCCCccc--c---c-----CCcCCcCCCee
Confidence 99999999999999999999999999998865 32 5799999999875421 2 3 58999999999
Q ss_pred EEEeeCC-CCeeEEcCCCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCC
Q 009001 261 TLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGN 339 (547)
Q Consensus 261 TLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~d 339 (547)
|||+||+ +||||+ .+|+|++|+|. ||++|||+||+|++||||+|+|++|||+.+ ..++|||++||++|+.|
T Consensus 145 TlL~qd~v~GLqV~-~~g~Wi~V~p~--p~a~vVNiGD~l~~~tng~~~S~~HRVv~~-----~~~~R~Sia~F~~p~~d 216 (262)
T PLN03001 145 TLLIQDDVEGLQLL-KDAEWLMVPPI--SDAILIIIADQTEIITNGNYKSAQHRAIAN-----ANKARLSVATFHDPAKT 216 (262)
T ss_pred EEEEeCCCCceEEe-eCCeEEECCCC--CCcEEEEccHHHHHHhCCccccccceEEcC-----CCCCEEEEEEEEcCCCC
Confidence 9999986 999998 47899999999 999999999999999999999999999963 45689999999999999
Q ss_pred cEEeCCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 009001 340 AILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (547)
Q Consensus 340 avI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~~~~ 375 (547)
++|.|+++++++ +.|.+|++++++||+..++.+..
T Consensus 217 ~~i~p~~e~v~~-~~p~~y~~~~~~e~l~~~~~~~~ 251 (262)
T PLN03001 217 AKIAPASALSTE-SFPPRYCEIVYGEYVSSWYSKGP 251 (262)
T ss_pred CEEeCChHhcCC-CCCCcCCCccHHHHHHHHHHhcc
Confidence 999999999854 57899999999999988877543
No 27
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.81 E-value=3.7e-20 Score=159.36 Aligned_cols=94 Identities=37% Similarity=0.592 Sum_probs=69.6
Q ss_pred ceeeeeeecCCCCCCCCCcccccCCCCCCCCCCccc--ccEEEEeeC-CCCeeEEcCCCCeEEeccCCCCCcEEEEcchh
Q 009001 222 SSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK--GLLTLISSD-SPGLQVCDPNGRWYLADGGSAPGDLLLITGKA 298 (547)
Q Consensus 222 s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~--GlLTLL~qD-~~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~ 298 (547)
+.+|+++|++ + ..+ .++++|+|. +++|||+|+ .+||||++. ++|+.|++. ++.++||+||+
T Consensus 2 ~~~~~~~Y~~-~---~~~---------~~~~~H~D~~~~~~Til~~~~~~gL~~~~~-~~~~~v~~~--~~~~~v~~G~~ 65 (98)
T PF03171_consen 2 SQLRLNRYPP-P---ENG---------VGIGPHTDDEDGLLTILFQDEVGGLQVRDD-GEWVDVPPP--PGGFIVNFGDA 65 (98)
T ss_dssp -EEEEEEE-S-C---CGC---------EEEEEEEES--SSEEEEEETSTS-EEEEET-TEEEE------TTCEEEEEBHH
T ss_pred CEEEEEECCC-c---ccC---------CceeCCCcCCCCeEEEEecccchheecccc-ccccCccCc--cceeeeeceee
Confidence 4799999998 1 111 248999999 999999996 599999975 489999999 99999999999
Q ss_pred hhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecC
Q 009001 299 LSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMP 336 (547)
Q Consensus 299 Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P 336 (547)
|+.||||.++|+.|||..+ ....|+|++||++|
T Consensus 66 l~~~t~g~~~~~~HrV~~~-----~~~~R~s~~~f~~p 98 (98)
T PF03171_consen 66 LEILTNGRYPATLHRVVPP-----TEGERYSLTFFLRP 98 (98)
T ss_dssp HHHHTTTSS----EEEE-------STS-EEEEEEEEE-
T ss_pred eecccCCccCCceeeeEcC-----CCCCEEEEEEEECC
Confidence 9999999999999999973 35799999999998
No 28
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.44 E-value=8.2e-14 Score=123.26 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=60.3
Q ss_pred cceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccc-----cCCCCcCccc
Q 009001 88 VRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQT-----VGKGSRGVYM 160 (547)
Q Consensus 88 IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee-----~~~~~rGYy~ 160 (547)
||||||+. +.+.+.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+ +++.++||..
T Consensus 1 iPvIDls~----~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~ 74 (116)
T PF14226_consen 1 IPVIDLSP----DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSPSYRGYSP 74 (116)
T ss_dssp --EEEHGG----CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCTTCSEEEE
T ss_pred CCeEECCC----CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCCCCccccc
Confidence 79999998 346789999999999999999999999999999999999999999999998 3456788754
No 29
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.40 E-value=7.7e-13 Score=119.70 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=59.9
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCccccc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV 151 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~ 151 (547)
...||+|||+.+.+++ ..+.+++++|.+||++||||||+||||+.++++++++.+++||+||.++|
T Consensus 35 ~~~iPvIDls~~~~~~-~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K 100 (120)
T PLN03176 35 SNEIPVISIAGIDDGG-EKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEK 100 (120)
T ss_pred CCCCCeEECccccCCc-hHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHH
Confidence 3479999999987654 45677899999999999999999999999999999999999999999983
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.29 E-value=1.7e-12 Score=107.37 Aligned_cols=67 Identities=18% Similarity=0.406 Sum_probs=57.5
Q ss_pred hhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccccCCcchhhHHHHHHHHHHhhh
Q 009001 399 SVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 399 ~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~ 465 (547)
.-|.+|||+++|.|+||++|||+|....|+++++. ..|++|+++++..+|+||.+||.++++|..+.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAEN 71 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHc
Confidence 45899999999999999999999999999998866 99999999999999999999999999999874
No 31
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.87 E-value=1.2e-09 Score=86.64 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=55.6
Q ss_pred hcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHHH
Q 009001 401 LSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVA 460 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~~ 460 (547)
+..||++.+|+|+|+++|||+|....|.+++ +...|+.|+++++..+|+||..||.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 5679999999999999999999999999966 56789999999999999999999999874
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.00029 Score=75.84 Aligned_cols=70 Identities=24% Similarity=0.478 Sum_probs=59.7
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHHh-hccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID-TSRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~-~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
..|+.-+.=|+=..++.++++.+|||.|-..-|+.+++ ...|+.|...+....|.+|++|+.+++.|+.-
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 34555566677778889999999999999999999774 45699999999999999999999999999853
No 33
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.20 E-value=0.0015 Score=51.84 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=28.9
Q ss_pred hhhcCcCcccccchhhhh-ccCcccchhHHHHHHh---hccccc--cc
Q 009001 399 SVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVID---TSRCTI--CS 440 (547)
Q Consensus 399 ~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~~---~~~c~~--c~ 440 (547)
.-+.+|||..++.|+|.. .|||+|..+.|..+++ ...|+. |+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 347899999999999998 7999999999999873 467774 64
No 34
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=95.87 E-value=0.0038 Score=61.09 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=45.7
Q ss_pred hcCcCcccccchhhhhccCcccchhHHHHHHh-----------------hccccccccccccCCcchhhHH
Q 009001 401 LSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID-----------------TSRCTICSAEIETGSLVPNLAL 454 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~-----------------~~~c~~c~~~~~~~~~~pn~~l 454 (547)
+.=||=.+.+.|+++.+|||+|=..=|.+|+. ...|+.|...++.++|+|.|.-
T Consensus 19 ~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 19 FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred cCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 44466677789999999999999999999864 3589999999999999998753
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.18 E-value=0.01 Score=44.57 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=20.6
Q ss_pred cCcccccch----hhhhccCcccchhHHHHHHhhc
Q 009001 404 PLSGAFLDD----AMVVSCGHSFGGLMLRKVIDTS 434 (547)
Q Consensus 404 p~~~~~~~d----~~i~~cghsfg~~~~~~~~~~~ 434 (547)
|++-+ +.+ +|+|+|||+|-.+-|+++.+.+
T Consensus 2 pIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 2 PICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred Ccccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 56667 677 9999999999999999998765
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=94.11 E-value=0.031 Score=58.64 Aligned_cols=73 Identities=22% Similarity=0.459 Sum_probs=58.7
Q ss_pred CCCccchhh---hcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 392 NKEPSLRSV---LSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 392 ~~~~slr~i---l~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
.+.|||+.+ |.-=|--+++.=+||.+|||.|-+.-|++-+ +...|+.|-.+.++-.|.-|.-|-.+++.|.--
T Consensus 12 tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 12 TSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred ccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 455666532 2222235678889999999999999999955 899999999999999999999999999988644
No 37
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=93.54 E-value=0.039 Score=41.03 Aligned_cols=36 Identities=28% Similarity=0.681 Sum_probs=25.6
Q ss_pred cCcccccchhhhhccCcccchhHHHHHHhhc-----ccccc
Q 009001 404 PLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS-----RCTIC 439 (547)
Q Consensus 404 p~~~~~~~d~~i~~cghsfg~~~~~~~~~~~-----~c~~c 439 (547)
||=..++.|+|.++|||||=..=|+++.+.. .|+.|
T Consensus 2 piC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 2 PICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp TTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 3445688999999999999999999977543 57766
No 38
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.092 Score=56.43 Aligned_cols=48 Identities=29% Similarity=0.656 Sum_probs=40.9
Q ss_pred hhhhccCcccchhHHHHHHh---hccccccccccccCCcchhhHHHHHHHH
Q 009001 413 AMVVSCGHSFGGLMLRKVID---TSRCTICSAEIETGSLVPNLALRAAAVA 460 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~~---~~~c~~c~~~~~~~~~~pn~~lr~~~~~ 460 (547)
.+++-|||=||+..|++++- .+.|+.|+-+-+--+|.|.|+||..++-
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~d 72 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMD 72 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHh
Confidence 35567999999999999873 4789999999888999999999976653
No 39
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=93.06 E-value=0.11 Score=44.52 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=47.1
Q ss_pred CCCCccc-----ccEEEEe--eC------CCCeeEEcC---CCCeEEec-----cCCCCCcEEEEcchhhhhhhCCCCCC
Q 009001 251 MNGEVEK-----GLLTLIS--SD------SPGLQVCDP---NGRWYLAD-----GGSAPGDLLLITGKALSHATAGLRPA 309 (547)
Q Consensus 251 ~g~HTD~-----GlLTLL~--qD------~~GLQV~~~---~G~Wv~Vp-----p~~~pg~lvVNiGD~Le~~TnG~lkS 309 (547)
+++|+|. ..+|+|. .+ ++.|++.+. ++....++ |. +|.+|++-+ ..
T Consensus 12 ~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~--~g~~v~F~~-----------~~ 78 (100)
T PF13640_consen 12 FGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPK--PGRLVIFPS-----------DN 78 (100)
T ss_dssp EEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-B--TTEEEEEES-----------CT
T ss_pred EeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCC--CCEEEEEeC-----------CC
Confidence 5799998 5888884 31 166888863 45566666 88 999998877 34
Q ss_pred ccceeecCCCCCCCCCCeeeEEEeec
Q 009001 310 ALYRAAPDFVSCSNGGGRTSLAFRLM 335 (547)
Q Consensus 310 t~HRVv~p~~~~~~~~~R~SiafFl~ 335 (547)
.+|+|... .....|+++.+|++
T Consensus 79 ~~H~v~~v----~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 79 SLHGVTPV----GEGGRRYSLTFWFH 100 (100)
T ss_dssp CEEEEEEE-----EESEEEEEEEEEE
T ss_pred CeecCccc----CCCCCEEEEEEEEC
Confidence 69999862 13568999999874
No 40
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=92.26 E-value=0.072 Score=38.53 Aligned_cols=32 Identities=34% Similarity=0.779 Sum_probs=24.1
Q ss_pred cccchh-hhhccCcccchhHHHHHH-hhcccccc
Q 009001 408 AFLDDA-MVVSCGHSFGGLMLRKVI-DTSRCTIC 439 (547)
Q Consensus 408 ~~~~d~-~i~~cghsfg~~~~~~~~-~~~~c~~c 439 (547)
+.+.|+ ++++|||+|=..=+++++ +...|+.|
T Consensus 6 ~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 6 DELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp SB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 456677 577999999999999966 55778776
No 41
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=91.49 E-value=0.1 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.697 Sum_probs=29.1
Q ss_pred cchhhhhccCcc-cchhHHHHHH-hhccccccccccc
Q 009001 410 LDDAMVVSCGHS-FGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 410 ~~d~~i~~cghs-fg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
..|+++++|||. |=..=+++++ ..+.|++|.++|+
T Consensus 12 ~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 12 PRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp BSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 567889999999 8888788865 7799999999986
No 42
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=91.32 E-value=0.13 Score=35.31 Aligned_cols=30 Identities=40% Similarity=0.922 Sum_probs=25.0
Q ss_pred cchhhhhccCcccchhHHHHHHh--hcccccc
Q 009001 410 LDDAMVVSCGHSFGGLMLRKVID--TSRCTIC 439 (547)
Q Consensus 410 ~~d~~i~~cghsfg~~~~~~~~~--~~~c~~c 439 (547)
..+.++++|||.|-..-++++++ ...|+.|
T Consensus 8 ~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 8 LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 56788899999999999999775 5668776
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=0.13 Score=59.15 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=46.4
Q ss_pred chhhhcCcCcccccchhhhhccCcccchhHHHHHH--hhccccccccccccCCcchh
Q 009001 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI--DTSRCTICSAEIETGSLVPN 451 (547)
Q Consensus 397 lr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~--~~~~c~~c~~~~~~~~~~pn 451 (547)
-|.+|.=|+=..=--|++|.+|||=|=-.=++..+ ++..||+||.+.-.+++.|-
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 35677777777678899999999999999999988 56999999999988877553
No 44
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=90.63 E-value=0.12 Score=38.27 Aligned_cols=29 Identities=21% Similarity=0.737 Sum_probs=23.3
Q ss_pred chhhhhccCcccchhHHHHHH-hhcccccc
Q 009001 411 DDAMVVSCGHSFGGLMLRKVI-DTSRCTIC 439 (547)
Q Consensus 411 ~d~~i~~cghsfg~~~~~~~~-~~~~c~~c 439 (547)
++.++++|||.|-..=|++++ +..+||+|
T Consensus 14 ~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~C 43 (44)
T PF13639_consen 14 EKVVKLPCGHVFHRSCIKEWLKRNNSCPVC 43 (44)
T ss_dssp SCEEEETTSEEEEHHHHHHHHHHSSB-TTT
T ss_pred CeEEEccCCCeeCHHHHHHHHHhCCcCCcc
Confidence 455677899999999999976 66789988
No 45
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=90.47 E-value=0.93 Score=43.67 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=45.9
Q ss_pred CCCCccc----ccEEEEee-----CCCCeeEEcC-----CCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeec
Q 009001 251 MNGEVEK----GLLTLISS-----DSPGLQVCDP-----NGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAP 316 (547)
Q Consensus 251 ~g~HTD~----GlLTLL~q-----D~~GLQV~~~-----~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~ 316 (547)
...|.|. ..+|+++. ..+|+-+... -| +.|.+. +|++++..|..+ .|-|..
T Consensus 87 t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g--~~~~~~--~GtVl~~~~~~~-----------~Hgvtp 151 (171)
T PF12851_consen 87 THSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILG--VAFAYQ--PGTVLIFCAKRE-----------LHGVTP 151 (171)
T ss_pred ccceecCCCCCCCeEEEEecCCccccCceEeccccccccCC--EEEecC--CCcEEEEcccce-----------eeecCc
Confidence 5778887 55666655 2377777754 34 556667 999999988765 455543
Q ss_pred CCCCCCCCCCeeeEEEeec
Q 009001 317 DFVSCSNGGGRTSLAFRLM 335 (547)
Q Consensus 317 p~~~~~~~~~R~SiafFl~ 335 (547)
-...+.+..+|+|++||.+
T Consensus 152 v~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 152 VESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ccCCCCCCCeEEEEEEEeE
Confidence 2111234468999999986
No 46
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.95 E-value=0.23 Score=35.28 Aligned_cols=33 Identities=27% Similarity=0.731 Sum_probs=25.3
Q ss_pred chhhh-hccCcccchhHHHHHHhh--cccccccccc
Q 009001 411 DDAMV-VSCGHSFGGLMLRKVIDT--SRCTICSAEI 443 (547)
Q Consensus 411 ~d~~i-~~cghsfg~~~~~~~~~~--~~c~~c~~~~ 443 (547)
.+.++ .+|||.|-..=++++++. ..|+.|+..+
T Consensus 10 ~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 10 REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 34444 459999999999998764 6799998753
No 47
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.59 E-value=0.17 Score=51.85 Aligned_cols=54 Identities=17% Similarity=0.492 Sum_probs=44.6
Q ss_pred chhhhcCcCcccccch---hhh-hccCcccchhHHHHHHhhccccccccccccCCcch
Q 009001 397 LRSVLSDPLSGAFLDD---AMV-VSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVP 450 (547)
Q Consensus 397 lr~il~dp~~~~~~~d---~~i-~~cghsfg~~~~~~~~~~~~c~~c~~~~~~~~~~p 450 (547)
....+.-|+|+..|.. .+. .+|||=|....|+++.+...|++|+.+.+..+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccCCEEE
Confidence 4567788999988865 444 48999999999999975668999999999888775
No 48
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.27 Score=48.32 Aligned_cols=69 Identities=22% Similarity=0.456 Sum_probs=56.1
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHHHHHhhhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDD 466 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~~ 466 (547)
.+-..+.-||--+.+.+.+|++|||+|=..-|+.+. ....|+.|.. ... .+.||..|-..+..+++.-.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence 344567788888889999999999999999998866 3578999996 333 78899999999999887633
No 49
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=88.90 E-value=0.27 Score=35.48 Aligned_cols=32 Identities=34% Similarity=0.841 Sum_probs=24.7
Q ss_pred cccchhh-hhccCcccchhHHHHHHh---hcccccc
Q 009001 408 AFLDDAM-VVSCGHSFGGLMLRKVID---TSRCTIC 439 (547)
Q Consensus 408 ~~~~d~~-i~~cghsfg~~~~~~~~~---~~~c~~c 439 (547)
+.+++.+ +++|||+|-..=|+++++ ...|+.|
T Consensus 6 ~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 6 EPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp SBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred ccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 3455555 889999999999999776 3567666
No 50
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=87.48 E-value=5.1 Score=40.47 Aligned_cols=48 Identities=27% Similarity=0.328 Sum_probs=35.6
Q ss_pred CCeeEEcCCCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeec
Q 009001 268 PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLM 335 (547)
Q Consensus 268 ~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~ 335 (547)
|.|.+.+..|. ..|+|. .|.+||+.. +.+|+|.+- ....||++.+..+
T Consensus 130 GEl~~~~~~g~-~~Vkp~--aG~~vlfps------------~~lH~v~pV-----t~G~R~~~~~Wi~ 177 (226)
T PRK05467 130 GELVIEDTYGE-HRVKLP--AGDLVLYPS------------TSLHRVTPV-----TRGVRVASFFWIQ 177 (226)
T ss_pred CceEEecCCCc-EEEecC--CCeEEEECC------------CCceeeeec-----cCccEEEEEecHH
Confidence 66999877665 578888 888888774 378999852 3457999887754
No 51
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=0.48 Score=48.31 Aligned_cols=70 Identities=14% Similarity=0.293 Sum_probs=57.5
Q ss_pred chhhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccccCCcchhhHHHHHHHHHHhhhh
Q 009001 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVPNLALRAAAVAIKQEDD 466 (547)
Q Consensus 397 lr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~~ 466 (547)
.-+-||-=||-++|+|.+|.+.|=++....|...++. ..=+.=.-++++.-++|||+|+.+|.+|..|-+
T Consensus 208 vpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 208 VPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred ccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 3467888999999999999999999999988875533 223455566889999999999999999988744
No 52
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=87.22 E-value=7.3 Score=36.87 Aligned_cols=160 Identities=18% Similarity=0.109 Sum_probs=86.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHhcCccccc-CCCCcCc-ccccCCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009001 120 AAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-GKGSRGV-YMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIAR 197 (547)
Q Consensus 120 FF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~-~~~~rGY-y~~~~G~~~n~WP~~P~~m~~y~~~m~~la~~LL~~IA~ 197 (547)
++++.| =++++.++.+.+.++..+. +.+.. +....+. ...+.. ...|-..-+ -..+...|.+.|+.
T Consensus 3 i~~~~~-~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~--~~~~l~~~~--------~~~~~~~l~~~i~~ 70 (178)
T smart00702 3 VVVFHD-FLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQS--NGTWLELLK--------GDLVIERIRQRLAD 70 (178)
T ss_pred EEEECC-CCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEee--cceecCCCC--------CCHHHHHHHHHHHH
Confidence 344444 3678889999998887663 33221 1111000 000000 001221100 12344555566666
Q ss_pred hCCCChhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccc--------cEEEEee--CC
Q 009001 198 HLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG--------LLTLISS--DS 267 (547)
Q Consensus 198 ~LGL~~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~G--------lLTLL~q--D~ 267 (547)
.++++.. .... ...+++++|.+.. ...+|.|.. .+|++.. |.
T Consensus 71 ~~~~~~~----~~~~--------~~~~~~~~Y~~g~----------------~~~~H~D~~~~~~~~~r~~T~~~yLn~~ 122 (178)
T smart00702 71 FLGLLRG----LPLS--------AEDAQVARYGPGG----------------HYGPHVDNFEDDENGDRIATFLLYLNDV 122 (178)
T ss_pred HHCCCch----hhcc--------CcceEEEEECCCC----------------cccCcCCCCCCCCCCCeEEEEEEEeccC
Confidence 6666422 1111 1368999998731 146888865 5777765 32
Q ss_pred ---CCeeEEcCCC-CeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeec
Q 009001 268 ---PGLQVCDPNG-RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLM 335 (547)
Q Consensus 268 ---~GLQV~~~~G-~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~ 335 (547)
|.|.+.+.+. ....|.|. .|.+||+.... +..+|.|... ....|+++..+++
T Consensus 123 ~~GG~~~f~~~~~~~~~~v~P~--~G~~v~f~~~~---------~~~~H~v~pv-----~~G~r~~~~~W~~ 178 (178)
T smart00702 123 EEGGELVFPGLGLMVCATVKPK--KGDLLFFPSGR---------GRSLHGVCPV-----TRGSRWAITGWIR 178 (178)
T ss_pred CcCceEEecCCCCccceEEeCC--CCcEEEEeCCC---------CCccccCCcc-----eeCCEEEEEEEEC
Confidence 4577765332 35688888 88888865321 1678998752 2358999988764
No 53
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=86.34 E-value=0.46 Score=49.21 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=57.2
Q ss_pred CCCccchhh---hcCcCcccccchhhhhccCcccchhHHHH-HHhhccccccccccccCCcchhhHHHHHHHHHHhhhhh
Q 009001 392 NKEPSLRSV---LSDPLSGAFLDDAMVVSCGHSFGGLMLRK-VIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDR 467 (547)
Q Consensus 392 ~~~~slr~i---l~dp~~~~~~~d~~i~~cghsfg~~~~~~-~~~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~~~ 467 (547)
++.|||+.+ |.-=|-..++.=.++-+|||.|-..-|++ +-+...|+.|-.+-.+--|.=|.-+|.+.+.|.+--+.
T Consensus 14 T~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~~ 93 (391)
T COG5432 14 TKIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRDL 93 (391)
T ss_pred ccCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccHH
Confidence 466776532 11112234455567789999999999999 55889999999999988888899999999998876443
No 54
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.70 E-value=0.73 Score=48.43 Aligned_cols=34 Identities=21% Similarity=0.519 Sum_probs=28.5
Q ss_pred hhhccCcccchhHHHHHHh--hccccccccccccCC
Q 009001 414 MVVSCGHSFGGLMLRKVID--TSRCTICSAEIETGS 447 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~~~~ 447 (547)
||..|||+|=..=++++.. ...|+.|...+.-..
T Consensus 22 ~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 22 MVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred ccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 5668999999999999663 357999999988777
No 55
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=0.81 Score=54.34 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=58.6
Q ss_pred hhhcCcCcccccchhhhhc-cCcccchhHHHH-HHhhccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 399 SVLSDPLSGAFLDDAMVVS-CGHSFGGLMLRK-VIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 399 ~il~dp~~~~~~~d~~i~~-cghsfg~~~~~~-~~~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
+-..||+++.+|-|.|+++ .|+.-..--|++ ++...+=+-|-++++++.++||-.||+=++.+..|
T Consensus 869 def~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~e 936 (943)
T KOG2042|consen 869 DEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIKE 936 (943)
T ss_pred hhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHHH
Confidence 4466999999999999998 999999998888 44555556999999999999999999999999888
No 56
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=85.03 E-value=0.37 Score=35.78 Aligned_cols=29 Identities=34% Similarity=0.757 Sum_probs=25.3
Q ss_pred hhhhccCcccchhHHHHHH-hhcccccccc
Q 009001 413 AMVVSCGHSFGGLMLRKVI-DTSRCTICSA 441 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~-~~~~c~~c~~ 441 (547)
++|++|||+|=..=++++. ....|++|.+
T Consensus 15 ~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 15 PRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred eEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 6788999999999998887 6789999974
No 57
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=0.47 Score=48.31 Aligned_cols=51 Identities=20% Similarity=0.496 Sum_probs=42.3
Q ss_pred hhhcCcCcccccch----hhhhccCcccchhHHHHHHhhccccccccccccCCcch
Q 009001 399 SVLSDPLSGAFLDD----AMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVP 450 (547)
Q Consensus 399 ~il~dp~~~~~~~d----~~i~~cghsfg~~~~~~~~~~~~c~~c~~~~~~~~~~p 450 (547)
+-.-=||+|-.|.+ +.+.+|||=|..--|++|+ .+.|..|++..++.++++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh-hccccccCCcccccCeEe
Confidence 44556888888887 4567999999999999887 899999999999888765
No 58
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=82.83 E-value=15 Score=36.36 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.4
Q ss_pred CeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEe
Q 009001 278 RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFR 333 (547)
Q Consensus 278 ~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafF 333 (547)
.|+.|+|. +|.+||+...+ .|+|.+ +....+|+|++|=
T Consensus 160 ~~~~v~P~--~G~lvlFPS~L------------~H~v~p----~~~~~~RISiSFN 197 (201)
T TIGR02466 160 RFVYVPPQ--EGRVLLFESWL------------RHEVPP----NESEEERISVSFN 197 (201)
T ss_pred ccEEECCC--CCeEEEECCCC------------ceecCC----CCCCCCEEEEEEe
Confidence 58889999 99999987754 689875 3345799999984
No 59
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=81.49 E-value=24 Score=33.59 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=45.7
Q ss_pred eeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccc-------cEEEEeeCCCCeeEEcC--CCCeEEeccCCCCCcEEE
Q 009001 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG-------LLTLISSDSPGLQVCDP--NGRWYLADGGSAPGDLLL 293 (547)
Q Consensus 223 ~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~G-------lLTLL~qD~~GLQV~~~--~G~Wv~Vpp~~~pg~lvV 293 (547)
...+++|.+.. +++.|.|-- +++|-+....-+.+... .+.++.|... +|+++|
T Consensus 98 ~~liN~Y~~g~----------------~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~--~gsl~v 159 (194)
T PF13532_consen 98 QCLINYYRDGS----------------GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLP--PGSLLV 159 (194)
T ss_dssp EEEEEEESSTT-----------------EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE---TTEEEE
T ss_pred EEEEEecCCCC----------------CcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcC--CCCEEE
Confidence 67889998832 256777764 23333333333455443 3578888888 999999
Q ss_pred EcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEe
Q 009001 294 ITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFR 333 (547)
Q Consensus 294 NiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafF 333 (547)
+-|++=..| .|..+... ..... ......|+||.|.
T Consensus 160 m~g~~r~~~-H~I~~~~~-~~~~~---~~~~~~RislTfR 194 (194)
T PF13532_consen 160 MSGEARYDW-HGIPPVKK-DTHPS---HYVRGRRISLTFR 194 (194)
T ss_dssp EETTHHHHE-EEE-S-SC-EEEES---TEE-S-EEEEEEE
T ss_pred eChHHhhhe-eEcccccC-Ccccc---ccCCCCEEEEEeC
Confidence 999996665 44332211 00000 0012479999883
No 60
>PHA02929 N1R/p28-like protein; Provisional
Probab=81.46 E-value=0.51 Score=47.95 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=30.6
Q ss_pred hhhhccCcccchhHHHHHH-hhccccccccccccCCcchhh
Q 009001 413 AMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~ 452 (547)
+++.+|||.|-..=|.+++ ....||.|.+++. +++++-
T Consensus 195 ~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~--~v~~~r 233 (238)
T PHA02929 195 GILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI--SVIKSR 233 (238)
T ss_pred eecCCCCCcccHHHHHHHHhcCCCCCCCCCEee--EEeeee
Confidence 4567899999999999977 5578999999876 555543
No 61
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.07 E-value=1.1 Score=43.63 Aligned_cols=55 Identities=18% Similarity=0.449 Sum_probs=43.7
Q ss_pred hhhhcCcCcccccchhhhh--ccCcccchhHHHHHH-hhccccccccccccCCcchhh
Q 009001 398 RSVLSDPLSGAFLDDAMVV--SCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 398 r~il~dp~~~~~~~d~~i~--~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~ 452 (547)
....+=|+=..-....+++ +|||=|=..=|+..+ .+-.|++|.+.|+...+++-|
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3446777777777777766 699999999999955 778999999999977776543
No 62
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=79.25 E-value=1.4 Score=46.44 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=52.4
Q ss_pred CCccchhhhcCcCcccccchhhhhc-cCcccchhHHHH-HHhhcccccccccccc----CCcchhhHHHHHHHHH
Q 009001 393 KEPSLRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLRK-VIDTSRCTICSAEIET----GSLVPNLALRAAAVAI 461 (547)
Q Consensus 393 ~~~slr~il~dp~~~~~~~d~~i~~-cghsfg~~~~~~-~~~~~~c~~c~~~~~~----~~~~pn~~lr~~~~~~ 461 (547)
+-.-+-..+..+|=+-+|+||.-+. |.|||=..=|-+ +.+..+|+.|+.-|-. ..|.+.-+|++.+.-+
T Consensus 8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 3445566778888899999998775 999999988776 6688999999988653 3455566777776543
No 63
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=77.77 E-value=1.1 Score=37.11 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=21.6
Q ss_pred hhhccCcccchhHHHHHH-hhccccccc
Q 009001 414 MVVSCGHSFGGLMLRKVI-DTSRCTICS 440 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~-~~~~c~~c~ 440 (547)
++..|||.|...=|++++ ...+||+|.
T Consensus 46 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 46 VWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp EEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred EecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 334799999999999977 557999994
No 64
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=76.77 E-value=1.5 Score=35.81 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=30.1
Q ss_pred chhhhcCcCcccccchhhh-hccCcccchhHHHHHHhhccccccccccccCCcchhhHHHHH
Q 009001 397 LRSVLSDPLSGAFLDDAMV-VSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAA 457 (547)
Q Consensus 397 lr~il~dp~~~~~~~d~~i-~~cghsfg~~~~~~~~~~~~c~~c~~~~~~~~~~pn~~lr~~ 457 (547)
|...|.=+.-..+|.+++. -.|.|.|=+.=|..-+.. -|+.|+.|-.+.++.-|--|-.+
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-ECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT-B-SSS--B-S-SS----HHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-CCCCcCChHHHHHHHhhhhhhcc
Confidence 4455666777888999965 579999999888775554 49999999988888777666443
No 65
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.07 E-value=1.5 Score=44.13 Aligned_cols=46 Identities=30% Similarity=0.605 Sum_probs=40.9
Q ss_pred cccchhhhhccCcccchhHHHHHHhh----ccccccccccccCCcchhhH
Q 009001 408 AFLDDAMVVSCGHSFGGLMLRKVIDT----SRCTICSAEIETGSLVPNLA 453 (547)
Q Consensus 408 ~~~~d~~i~~cghsfg~~~~~~~~~~----~~c~~c~~~~~~~~~~pn~~ 453 (547)
+.-.|+||--|||=|==.=|-+|++. +.|+.|+..|+.+.|+|=|.
T Consensus 55 d~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 55 DLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred cccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 34679999999999999999998865 67899999999999999885
No 66
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=73.43 E-value=21 Score=35.83 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=48.8
Q ss_pred eeeeeeecCCCCCCCCCcccccCCCCCCCCCCccc-----c--cEEEEeeCCCCeeEEc--CCCCeEEeccCCCCCcEEE
Q 009001 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK-----G--LLTLISSDSPGLQVCD--PNGRWYLADGGSAPGDLLL 293 (547)
Q Consensus 223 ~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~-----G--lLTLL~qD~~GLQV~~--~~G~Wv~Vpp~~~pg~lvV 293 (547)
...+|+|.+.. +++.|.|- + ++.|-+.+..=+.+.. ..+.++.+.-. .|+++|
T Consensus 117 a~LvN~Y~~G~----------------~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~--~Gdllv 178 (213)
T PRK15401 117 ACLINRYAPGA----------------KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKRSDPLQRILLE--HGDVVV 178 (213)
T ss_pred EEEEEeccCcC----------------ccccccCCCcccCCCCEEEEeCCCCeEEEecccCCCCceEEEEeC--CCCEEE
Confidence 57889998742 26788883 2 2222222222233321 23468888888 999999
Q ss_pred EcchhhhhhhCCCCCCccceeecCCC--CCCCCCCeeeEEEe
Q 009001 294 ITGKALSHATAGLRPAALYRAAPDFV--SCSNGGGRTSLAFR 333 (547)
Q Consensus 294 NiGD~Le~~TnG~lkSt~HRVv~p~~--~~~~~~~R~SiafF 333 (547)
.-|+. +.| .|.|..-.. ....+..|+++.|.
T Consensus 179 m~G~s-r~~--------~HgVp~~~~~~~p~~g~~RINLTFR 211 (213)
T PRK15401 179 WGGPS-RLR--------YHGILPLKAGEHPLTGECRINLTFR 211 (213)
T ss_pred ECchH-hhe--------eccCCcCCCCcCCCCCCCeEEEEeE
Confidence 99996 554 455532100 00013479999985
No 67
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=72.15 E-value=5.3 Score=34.60 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=24.7
Q ss_pred CCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEE
Q 009001 277 GRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAF 332 (547)
Q Consensus 277 G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~Siaf 332 (547)
..++.++|. +|.|||+.+.+ .|+|.. +....+|+||+|
T Consensus 63 ~~~~~~~p~--~G~lvlFPs~l------------~H~v~p----~~~~~~Risisf 100 (101)
T PF13759_consen 63 SPYYIVEPE--EGDLVLFPSWL------------WHGVPP----NNSDEERISISF 100 (101)
T ss_dssp -SEEEE-----TTEEEEEETTS------------EEEE--------SSS-EEEEEE
T ss_pred CceEEeCCC--CCEEEEeCCCC------------EEeccC----cCCCCCEEEEEc
Confidence 468889999 99999999875 799875 334468999997
No 68
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=70.04 E-value=5.7 Score=41.54 Aligned_cols=60 Identities=25% Similarity=0.547 Sum_probs=49.8
Q ss_pred hcCcCcccccchhhhh-ccCcccchhHHHH-HHhh-ccccccccc-cccCCcchhhHHHHHHHH
Q 009001 401 LSDPLSGAFLDDAMVV-SCGHSFGGLMLRK-VIDT-SRCTICSAE-IETGSLVPNLALRAAAVA 460 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~-~cghsfg~~~~~~-~~~~-~~c~~c~~~-~~~~~~~pn~~lr~~~~~ 460 (547)
|.-||.+-++..+|=- .|||.|-.+-|+- ++++ ..|+.|... |--++|+|.+--..-+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~ 338 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEK 338 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHH
Confidence 7889999999999998 5999999999997 5555 789999975 778899999876544433
No 69
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.92 E-value=2.2 Score=45.63 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=30.8
Q ss_pred hhhhccCcccchhHHHHHH-hh-ccccccccccccCCcc
Q 009001 413 AMVVSCGHSFGGLMLRKVI-DT-SRCTICSAEIETGSLV 449 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~-~~-~~c~~c~~~~~~~~~~ 449 (547)
..||+|.|=|=..=|+.|+ +. ..||+|++.+.++.-.
T Consensus 245 lRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 245 LRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred eeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 5689999999999999987 55 4599999987765553
No 70
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.24 E-value=3.4 Score=42.62 Aligned_cols=57 Identities=18% Similarity=0.443 Sum_probs=41.4
Q ss_pred cchhhhcCcCcccccchhhh-----hccCcccchhHHHHHH---hhccccccccccccCCcchhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMV-----VSCGHSFGGLMLRKVI---DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i-----~~cghsfg~~~~~~~~---~~~~c~~c~~~~~~~~~~pn~ 452 (547)
|+=+|-..=+--++=+|++| |+|+|+|--.-|+.+- ++.+||-|+..++-.+++-|.
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNP 289 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCc
Confidence 44444444444444455555 6899999999999943 889999999999988887664
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=1.7 Score=45.30 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=31.8
Q ss_pred ccccchhhhhccCcccch-hHHHHHHhhccccccccccc
Q 009001 407 GAFLDDAMVVSCGHSFGG-LMLRKVIDTSRCTICSAEIE 444 (547)
Q Consensus 407 ~~~~~d~~i~~cghsfg~-~~~~~~~~~~~c~~c~~~~~ 444 (547)
.....+.|+.+|||.|=. -.|++.++...|.+|++.+-
T Consensus 248 r~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 248 RKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 455778899999999954 46777899999999999876
No 72
>PHA02926 zinc finger-like protein; Provisional
Probab=63.17 E-value=4.3 Score=40.96 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=28.8
Q ss_pred hhhccCcccchhHHHHHHhhc-------cccccccccccCCcchh
Q 009001 414 MVVSCGHSFGGLMLRKVIDTS-------RCTICSAEIETGSLVPN 451 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~~~~-------~c~~c~~~~~~~~~~pn 451 (547)
++.+|+|+|=-.=|++|.+.. .||+|-+... .++|+
T Consensus 193 IL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 193 LLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred ccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 456899999999999999753 4999999866 44443
No 73
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=58.03 E-value=6.3 Score=42.44 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=24.9
Q ss_pred hccCcccchhHHHHHH-hhccccccccc
Q 009001 416 VSCGHSFGGLMLRKVI-DTSRCTICSAE 442 (547)
Q Consensus 416 ~~cghsfg~~~~~~~~-~~~~c~~c~~~ 442 (547)
++|||-|-=.-|+-|+ +.-+|+||..+
T Consensus 316 LpCGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 316 LPCGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred ccccceeeHHHHHHHHHhccCCCcccCc
Confidence 6899999999999988 67899999999
No 74
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.42 E-value=5.7 Score=44.94 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=28.9
Q ss_pred chhhhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 411 DDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 411 ~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
.++-+++|||-|...-|++|. +..+|++|...+-
T Consensus 307 ~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 307 ITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 447889999999999999977 6789999998533
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=55.86 E-value=4.9 Score=39.81 Aligned_cols=35 Identities=31% Similarity=0.699 Sum_probs=29.0
Q ss_pred cchhhhhccCcccchh-HHHHHHhhccccccccccc
Q 009001 410 LDDAMVVSCGHSFGGL-MLRKVIDTSRCTICSAEIE 444 (547)
Q Consensus 410 ~~d~~i~~cghsfg~~-~~~~~~~~~~c~~c~~~~~ 444 (547)
.+..++-.|||+|-+. -|++.++...|.+|.+.+-
T Consensus 206 y~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 206 YESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 5678888999999665 5667889999999998754
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.53 E-value=16 Score=40.16 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=41.2
Q ss_pred Ccccccchhhhhc-cCcccchhHHHH-HHhhccccccccccccCCcch
Q 009001 405 LSGAFLDDAMVVS-CGHSFGGLMLRK-VIDTSRCTICSAEIETGSLVP 450 (547)
Q Consensus 405 ~~~~~~~d~~i~~-cghsfg~~~~~~-~~~~~~c~~c~~~~~~~~~~p 450 (547)
|||++=++.||.+ .||=|-.--|++ +.|++.|+|-+++++++.|+|
T Consensus 5 ISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 5 ISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVE 52 (506)
T ss_pred ccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeee
Confidence 7899999999996 999999999999 559999999999988776654
No 77
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=51.08 E-value=30 Score=40.81 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=13.5
Q ss_pred CCccHHHHHHHHHHhhcCC
Q 009001 359 VPISVSQFMDDLSAEEDGL 377 (547)
Q Consensus 359 ~~it~ge~~~~~~~~~~~~ 377 (547)
...|.-.|+.+.+++.|..
T Consensus 859 qk~TLLHfLae~~e~kypd 877 (1102)
T KOG1924|consen 859 QKTTLLHFLAEICEEKYPD 877 (1102)
T ss_pred hhhHHHHHHHHHHHHhChh
Confidence 3567777887777777764
No 78
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=47.26 E-value=26 Score=35.66 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=45.1
Q ss_pred cCcccccchhhhh-ccCcccchhHHHHHHh---hcccc--ccccccccCCcc--hhhHHHHHHHHHHhhhhh
Q 009001 404 PLSGAFLDDAMVV-SCGHSFGGLMLRKVID---TSRCT--ICSAEIETGSLV--PNLALRAAAVAIKQEDDR 467 (547)
Q Consensus 404 p~~~~~~~d~~i~-~cghsfg~~~~~~~~~---~~~c~--~c~~~~~~~~~~--pn~~lr~~~~~~~~~~~~ 467 (547)
|||-..-.-..|. +|-|=|-.++|.+.+. +-.|+ +|+|-.+-..+. |-+-+|.+++-+|+-++.
T Consensus 193 pitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~sqeq 264 (275)
T COG5627 193 PITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRNSQEQ 264 (275)
T ss_pred CcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHHhhhhh
Confidence 4444444444444 5999999999999665 67788 999987654443 457788888888776554
No 79
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=44.80 E-value=23 Score=36.52 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=34.9
Q ss_pred hcCcCcccccchhhhh-ccCcccchhHHHHHH---hhcccc--ccccc
Q 009001 401 LSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVI---DTSRCT--ICSAE 442 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~---~~~~c~--~c~~~ 442 (547)
+.||+|-.+..-.+|+ +|||=|..++|..++ .+-.|+ +|.++
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~ 224 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENP 224 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCcc
Confidence 3578888888889999 599999999999977 368898 88844
No 80
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.03 E-value=11 Score=35.03 Aligned_cols=25 Identities=28% Similarity=0.713 Sum_probs=14.5
Q ss_pred hcCcCccccc-----chhhhh-ccCcccchh
Q 009001 401 LSDPLSGAFL-----DDAMVV-SCGHSFGGL 425 (547)
Q Consensus 401 l~dp~~~~~~-----~d~~i~-~cghsfg~~ 425 (547)
+..|+..-+. +.-||- +||||||.-
T Consensus 52 illpvg~hlfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 52 ILLPVGDHLFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred eeeecCCcEEEEecccccEEEEeccccccCh
Confidence 3456654442 223333 799999964
No 81
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=39.38 E-value=13 Score=28.79 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=20.7
Q ss_pred ccCcccchhHHHHHHhhcccccc
Q 009001 417 SCGHSFGGLMLRKVIDTSRCTIC 439 (547)
Q Consensus 417 ~cghsfg~~~~~~~~~~~~c~~c 439 (547)
.|||+|-+.--.++.....|+.|
T Consensus 33 ~Cgh~w~~~v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhccCCCCCCCC
Confidence 58999999888888889999988
No 82
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=39.28 E-value=1.3e+02 Score=33.86 Aligned_cols=25 Identities=0% Similarity=0.011 Sum_probs=15.1
Q ss_pred CCcceeeCCCCCCCCCchhHHHHHHHH
Q 009001 86 PRVRLSDVAPYDGAPAGPYLKAVEALS 112 (547)
Q Consensus 86 ~~IPvIDLs~l~~~d~~~~~~~~~~L~ 112 (547)
.+++.++...+.++| .|..+.++|+
T Consensus 479 ~ql~~ve~t~~~~~d--gR~~LmaqIR 503 (569)
T KOG3671|consen 479 GQLKKVETTALSSGD--GRDALMAQIR 503 (569)
T ss_pred ccccceeeccCcCcc--cHHHHHHHHH
Confidence 356666666665433 4666666665
No 83
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=38.06 E-value=15 Score=29.18 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=25.0
Q ss_pred hhhhhccCcccchhHHHHHHhhccccccccccccCCc
Q 009001 412 DAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSL 448 (547)
Q Consensus 412 d~~i~~cghsfg~~~~~~~~~~~~c~~c~~~~~~~~~ 448 (547)
.-++++|||--=.+--. +-+-+.|++|..+++.++.
T Consensus 19 ~~~~~pCgH~I~~~~f~-~~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFP-GERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccccceeeccccC-hhhccCCCCCCCcccCCCC
Confidence 35688999954322211 3356899999999998775
No 84
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=35.64 E-value=24 Score=38.41 Aligned_cols=62 Identities=24% Similarity=0.485 Sum_probs=48.0
Q ss_pred chhhhcCcCcccccchhhhh-ccCcccchhHHHHHH-hhccccccccccccCCcch--hhHHHHHH
Q 009001 397 LRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVP--NLALRAAA 458 (547)
Q Consensus 397 lr~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~p--n~~lr~~~ 458 (547)
++.=|+.|+=..++.|++.. .|||.|.+.-+.+.. ....|+-|-++++...+.| |..-+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~ 83 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELL 83 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHH
Confidence 55557888889999999995 999999999999966 4589999988876555554 55555444
No 85
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.26 E-value=43 Score=38.73 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=57.4
Q ss_pred chhhhcCcCcccccchhhhhc-cCcccchhHHHH-HHhhccccccccccccCCcchhhHHHHHHHHHHh
Q 009001 397 LRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLRK-VIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQ 463 (547)
Q Consensus 397 lr~il~dp~~~~~~~d~~i~~-cghsfg~~~~~~-~~~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~ 463 (547)
..+-..|||.=.+|-|.|+++ .|-+-....|+- ++--++=+---.|++.+.++||-.||.-+--|..
T Consensus 851 vPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k 919 (929)
T COG5113 851 VPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYK 919 (929)
T ss_pred CchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHh
Confidence 557789999999999999997 999999999987 6677777888888999999999999976665543
No 86
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=8.2 Score=40.37 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=22.4
Q ss_pred cchhhhhccCcccchhHHHHHHhhcccccccccc
Q 009001 410 LDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEI 443 (547)
Q Consensus 410 ~~d~~i~~cghsfg~~~~~~~~~~~~c~~c~~~~ 443 (547)
-.|-++|+|||+.-...--+ +|.-|+||-|-|
T Consensus 310 P~DCvfLeCGHmVtCt~CGk--rm~eCPICRqyi 341 (350)
T KOG4275|consen 310 PRDCVFLECGHMVTCTKCGK--RMNECPICRQYI 341 (350)
T ss_pred CcceEEeecCcEEeehhhcc--ccccCchHHHHH
Confidence 35889999999876544333 344788887764
No 87
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.32 E-value=29 Score=36.29 Aligned_cols=42 Identities=14% Similarity=0.375 Sum_probs=37.4
Q ss_pred ccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCc
Q 009001 407 GAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSL 448 (547)
Q Consensus 407 ~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~ 448 (547)
.+.+.|..-.+|||=|=-.=|..|. |+..||.|-.+.+...+
T Consensus 246 Le~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 246 LENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred ecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 5678899999999999999999977 77889999999887766
No 88
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=23 Score=39.35 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=52.6
Q ss_pred ccccchhhhhc-cCcccchhHHHHHHhhccccccccc-cccCCcchhhHHHHHHHHHHhhhhhhhhhh
Q 009001 407 GAFLDDAMVVS-CGHSFGGLMLRKVIDTSRCTICSAE-IETGSLVPNLALRAAAVAIKQEDDRRLFHN 472 (547)
Q Consensus 407 ~~~~~d~~i~~-cghsfg~~~~~~~~~~~~c~~c~~~-~~~~~~~pn~~lr~~~~~~~~~~~~~~~~~ 472 (547)
..+++++++.+ |+-|||-.-|++-+..+.|+.|.+. ...+.+.|+..||.+....-.-.++...+.
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a~~n~~~~~~ 295 (448)
T KOG0314|consen 228 EVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVLADDLLPPKTLRDTINRILASGNSSGENS 295 (448)
T ss_pred hhhHHHHHhhhhhcccCCccccccccccccCCcchhhcccccccCCchhhHHHHHHHHhhhcccccCc
Confidence 45678888876 9999999999999988999999988 568899999999998876554444444443
No 89
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=30.74 E-value=71 Score=30.73 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCC
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSE 128 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV 128 (547)
...||++++.... .+++++.+.+++.+...+.|.|||+
T Consensus 118 ~~~v~v~~~~~~g------~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 118 LKKIPILPFRPAG------SVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CCCEeeecCCCCC------cHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4579999876432 2466788899999999999999996
No 90
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.43 E-value=19 Score=28.75 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=22.5
Q ss_pred chhhhhccCcc---cchhHHHHHH-hhccccccccccc
Q 009001 411 DDAMVVSCGHS---FGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 411 ~d~~i~~cghs---fg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
.|-||..|||= |.. +|+.+. -...|+||.++|+
T Consensus 18 vdsVlYtCGHMCmCy~C-g~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 18 VDSVLYTCGHMCMCYAC-GLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred chHHHHHcchHHhHHHH-HHHHHHccCCcCcchhhHHH
Confidence 46788899995 333 233333 4578999999875
No 91
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=30.13 E-value=31 Score=38.06 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=42.2
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCc
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTK 147 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP 147 (547)
...-||.||++++.++. ..+.+.+.+++.|+++|.|. |+.+......+..++|.+..
T Consensus 46 G~~~IP~i~f~di~~~~------~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~n 102 (416)
T PF07350_consen 46 GSSIIPEIDFADIENGG------VSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKAN 102 (416)
T ss_dssp T--SS-EEEHHHHHCT---------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceeeHHHHhCCC------CCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHhC
Confidence 34569999999997653 23567788888999999987 99999999999999998743
No 92
>PRK08130 putative aldolase; Validated
Probab=30.03 E-value=86 Score=30.95 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=29.8
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCC
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSE 128 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV 128 (547)
...||++++.... ..++++++.+++.+...+.+.|||+
T Consensus 125 ~g~i~v~~y~~~g------~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 125 VGHVPLIPYYRPG------DPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred cCccceECCCCCC------hHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4578998766431 2467788999999999999999995
No 93
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=29.68 E-value=17 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.854 Sum_probs=19.8
Q ss_pred hcCcCcccccchhhhhccCccc
Q 009001 401 LSDPLSGAFLDDAMVVSCGHSF 422 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~~cghsf 422 (547)
|+-|+-|.|.+|.+||+|||+.
T Consensus 5 lkc~vc~~f~~epiil~c~h~l 26 (699)
T KOG4367|consen 5 LKCPVCGSFYREPIILPCSHNL 26 (699)
T ss_pred ccCceehhhccCceEeecccHH
Confidence 5678999999999999999984
No 94
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.10 E-value=31 Score=36.50 Aligned_cols=34 Identities=26% Similarity=0.565 Sum_probs=29.2
Q ss_pred chhhhhccCcccchhHHHHHHh--hccccccccccc
Q 009001 411 DDAMVVSCGHSFGGLMLRKVID--TSRCTICSAEIE 444 (547)
Q Consensus 411 ~d~~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~ 444 (547)
|-.|+++|-|=|-..-++||+- ...|+.|+-++-
T Consensus 337 d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 337 DRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 4468999999999999999884 689999998763
No 95
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=27.94 E-value=1.3e+02 Score=35.70 Aligned_cols=9 Identities=44% Similarity=0.601 Sum_probs=3.5
Q ss_pred CCCcccccc
Q 009001 21 PQSQSTASA 29 (547)
Q Consensus 21 ~~~~~~~~~ 29 (547)
|.++|++++
T Consensus 990 p~~~s~~~s 998 (1106)
T KOG0162|consen 990 PVSTSTTTS 998 (1106)
T ss_pred CCCcccccc
Confidence 334444333
No 96
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.53 E-value=61 Score=35.56 Aligned_cols=38 Identities=29% Similarity=0.594 Sum_probs=31.7
Q ss_pred ccccchhhhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 407 GAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 407 ~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
...+-+.+..+|||||-..=|++.+ +..-|++|..++-
T Consensus 91 ~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 91 SRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred HhhcCCCccccccccccHHHHHHHhccCCCCcccccccc
Confidence 4557788888999999999888865 7788999998865
No 97
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=27.17 E-value=22 Score=23.80 Aligned_cols=16 Identities=19% Similarity=0.609 Sum_probs=11.9
Q ss_pred hccccccccccccCCc
Q 009001 433 TSRCTICSAEIETGSL 448 (547)
Q Consensus 433 ~~~c~~c~~~~~~~~~ 448 (547)
+..||+|++.+....+
T Consensus 1 ~v~CPiC~~~v~~~~i 16 (26)
T smart00734 1 LVQCPVCFREVPENLI 16 (26)
T ss_pred CCcCCCCcCcccHHHH
Confidence 3579999999865444
No 98
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=26.38 E-value=43 Score=25.77 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=21.3
Q ss_pred hcCcCcccccchhhhh-ccCcc--cchhHHHHH-Hhh--ccccccccc
Q 009001 401 LSDPLSGAFLDDAMVV-SCGHS--FGGLMLRKV-IDT--SRCTICSAE 442 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~-~cghs--fg~~~~~~~-~~~--~~c~~c~~~ 442 (547)
|..|||...|.=++=. .|-|- |..+..-.. .++ -.|++|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5678888887766655 59996 776554443 333 459999875
No 99
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=25.19 E-value=44 Score=37.79 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=37.8
Q ss_pred ccccchhhhhccCcccchhHHHHHHhh------ccccccccccccCCcchhhH
Q 009001 407 GAFLDDAMVVSCGHSFGGLMLRKVIDT------SRCTICSAEIETGSLVPNLA 453 (547)
Q Consensus 407 ~~~~~d~~i~~cghsfg~~~~~~~~~~------~~c~~c~~~~~~~~~~pn~~ 453 (547)
..+-+|++..+|-|.|-..-|+.-++. -+|+.|+.+++.+.--|-+.
T Consensus 543 ~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ale 595 (791)
T KOG1002|consen 543 HDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALE 595 (791)
T ss_pred CChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhh
Confidence 345789999999999999999886654 79999999988775555443
No 100
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.35 E-value=31 Score=23.21 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=10.6
Q ss_pred ccchhhhhc-cCcccch
Q 009001 409 FLDDAMVVS-CGHSFGG 424 (547)
Q Consensus 409 ~~~d~~i~~-cghsfg~ 424 (547)
+-.++.+=+ |||+|.+
T Consensus 10 V~~~~~~Cp~CG~~F~~ 26 (26)
T PF10571_consen 10 VPESAKFCPHCGYDFEA 26 (26)
T ss_pred chhhcCcCCCCCCCCcC
Confidence 344555666 9999963
No 101
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.39 E-value=2.1e+02 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhH
Q 009001 450 PNLALRAAAVAIKQEDDRRLFHNA 473 (547)
Q Consensus 450 pn~~lr~~~~~~~~~~~~~~~~~~ 473 (547)
=|..|-|.+.+-++-++...-+.+
T Consensus 986 rnaf~ea~~en~krRee~Ek~rr~ 1009 (1102)
T KOG1924|consen 986 RNAFLEAVAENEKRREEEEKERRA 1009 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444433333333
No 102
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=23.06 E-value=93 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=23.0
Q ss_pred hccccccccccccCCcchhhHHHHHHHHHHhhhhhhhhhhHHHHHh
Q 009001 433 TSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKR 478 (547)
Q Consensus 433 ~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~~~~~~~~~~~~~~ 478 (547)
-+-|.-|+++|..+.- +..|+=.++..+.++|+|
T Consensus 8 H~HC~VCg~aIp~de~------------~CSe~C~eil~ker~R~r 41 (64)
T COG4068 8 HRHCVVCGKAIPPDEQ------------VCSEECGEILNKERKRQR 41 (64)
T ss_pred CccccccCCcCCCccc------------hHHHHHHHHHHHHHHHHH
Confidence 4679999999997754 666665555555544443
No 103
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.70 E-value=40 Score=36.23 Aligned_cols=68 Identities=26% Similarity=0.305 Sum_probs=42.7
Q ss_pred HHHhhcCCCCCCCchhHHhhhcCCCccchhhhcCcCcccccchhhhhccCcccchhHHHHHH--hhccccccccccc
Q 009001 370 LSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI--DTSRCTICSAEIE 444 (547)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~--~~~~c~~c~~~~~ 444 (547)
.+.+.|+..+...+.... . ..+.+.+=|+|. | =--|-+|++|=|-==+.+=-+.+ .+-.|+||-++|+
T Consensus 267 ~LqEiyGien~~v~~~~~--~-~~~~gkeCVICl--s--e~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 267 LLQEIYGIENSTVEGTDA--D-ESESGKECVICL--S--ESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred eeehhhccccCCCCCCcc--c-cccCCCeeEEEe--c--CCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 345556654433332222 2 455566666652 1 13578999999976666666655 4788999999987
No 104
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=22.24 E-value=27 Score=33.42 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.8
Q ss_pred ceeecceeEeecCcccccccCccccccccc
Q 009001 513 PFSVNEKVLIKEDTREVCWEGSCHHIPMSQ 542 (547)
Q Consensus 513 p~~v~~~v~i~gn~rt~~~~~~~~~~~~~~ 542 (547)
++.+.--.=|++-|||+++-.-||-||.+.
T Consensus 54 Vl~tAriAgimaaKkT~elIPlCHpi~lt~ 83 (157)
T COG0315 54 VLATARIAGIMAAKRTSELIPLCHPLPLTK 83 (157)
T ss_pred HHHHHHHHHHHHhhhhhhhCccCCCCcccc
Confidence 344555555899999999999999999764
No 105
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=21.78 E-value=98 Score=33.11 Aligned_cols=51 Identities=6% Similarity=-0.119 Sum_probs=37.2
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHH
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLY 143 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~F 143 (547)
.+.+|.||+..+... .+...++.+++.++|++.+.+-+++.+ ...+.++.|
T Consensus 107 ~~~~~~~d~~~~~~~-----~~~~~~~~~~l~~~G~v~~rg~~~~~~---~~~~~~~~~ 157 (366)
T TIGR02409 107 ELSLPKFDHEAVMKD-----DSVLLDWLSAVRDVGIAVLKGAPTKPG---AVEKLGKRI 157 (366)
T ss_pred cccCCceeHHHHhCC-----HHHHHHHHHHHHhccEEEEeCCCCCHH---HHHHHHHHh
Confidence 356888999877642 234677899999999999999888764 344555554
No 106
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=21.63 E-value=1.4e+02 Score=29.77 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=29.2
Q ss_pred CCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCC
Q 009001 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSE 128 (547)
Q Consensus 86 ~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV 128 (547)
..||++++.... ..++++++.+++.+...+.|.|||+
T Consensus 126 ~~v~~~~y~~~g------s~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 126 GDVRCTEYAASG------TPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred CceeeecCCCCC------cHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 358888775321 2577889999999999999999996
No 107
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=21.53 E-value=97 Score=25.01 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=25.8
Q ss_pred EEcCCCC-eEEeccCCCCCcEEEEcchhhhhhhCCC
Q 009001 272 VCDPNGR-WYLADGGSAPGDLLLITGKALSHATAGL 306 (547)
Q Consensus 272 V~~~~G~-Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~ 306 (547)
++-.+|. |+.+... +++.++..||.|..-.+++
T Consensus 20 l~v~~G~vWlT~~g~--~~D~~L~~G~~l~l~~g~~ 53 (63)
T PF11142_consen 20 LRVESGRVWLTREGD--PDDYWLQAGDSLRLRRGGR 53 (63)
T ss_pred EEEccccEEEECCCC--CCCEEECCCCEEEeCCCCE
Confidence 3334564 9999888 9999999999998776654
No 108
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=21.52 E-value=41 Score=29.89 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=6.0
Q ss_pred ceeecceeEeecC
Q 009001 513 PFSVNEKVLIKED 525 (547)
Q Consensus 513 p~~v~~~v~i~gn 525 (547)
-|.+||+|-|++|
T Consensus 32 ~yk~GD~V~I~id 44 (99)
T PF01157_consen 32 EYKVGDKVDIKID 44 (99)
T ss_dssp ---TT-EEEE---
T ss_pred HccCCCEEEEEec
Confidence 5999999999998
Done!