Query 009001
Match_columns 547
No_of_seqs 184 out of 1373
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oox_A Putative 2OG-Fe(II) oxy 100.0 2E-58 7E-63 474.9 24.8 267 83-374 2-309 (312)
2 1gp6_A Leucoanthocyanidin diox 100.0 3.3E-57 1.1E-61 474.2 27.6 267 86-375 45-346 (356)
3 1w9y_A 1-aminocyclopropane-1-c 100.0 4E-56 1.4E-60 459.7 24.3 265 86-375 2-294 (319)
4 1odm_A Isopenicillin N synthas 100.0 2.3E-55 7.8E-60 455.8 22.8 263 83-375 4-325 (331)
5 1dcs_A Deacetoxycephalosporin 100.0 4.1E-55 1.4E-59 450.4 17.7 264 85-377 2-308 (311)
6 3on7_A Oxidoreductase, iron/as 100.0 1.5E-52 5E-57 425.7 24.7 248 87-375 3-278 (280)
7 2kr4_A Ubiquitin conjugation f 99.1 8.4E-11 2.9E-15 98.6 4.8 69 396-464 10-79 (85)
8 2kre_A Ubiquitin conjugation f 99.0 2E-10 7E-15 99.3 4.2 70 395-464 24-94 (100)
9 1wgm_A Ubiquitin conjugation f 98.9 3.9E-10 1.3E-14 97.2 3.9 71 395-465 17-89 (98)
10 2yu4_A E3 SUMO-protein ligase 98.9 7.7E-10 2.6E-14 94.3 3.5 69 396-464 3-82 (94)
11 2f42_A STIP1 homology and U-bo 98.9 1.2E-09 4E-14 104.1 4.8 71 394-464 100-172 (179)
12 1t1h_A Gspef-atpub14, armadill 98.8 1E-09 3.5E-14 89.4 2.9 71 395-465 3-75 (78)
13 2c2l_A CHIP, carboxy terminus 98.6 2.4E-08 8.1E-13 98.9 4.4 69 396-464 204-274 (281)
14 3ztg_A E3 ubiquitin-protein li 98.4 1.7E-07 5.8E-12 78.5 5.0 75 393-467 6-85 (92)
15 2bay_A PRE-mRNA splicing facto 98.2 4.3E-07 1.5E-11 71.6 2.0 53 401-453 4-58 (61)
16 3htk_C E3 SUMO-protein ligase 98.1 2.8E-06 9.7E-11 85.1 5.3 68 395-462 176-249 (267)
17 2y43_A E3 ubiquitin-protein li 98.0 2.9E-06 9.9E-11 72.1 4.2 71 395-465 17-89 (99)
18 1jm7_B BARD1, BRCA1-associated 98.0 3.2E-06 1.1E-10 74.2 3.0 70 395-465 17-87 (117)
19 3fl2_A E3 ubiquitin-protein li 97.9 5.1E-06 1.7E-10 73.5 4.2 70 396-465 48-120 (124)
20 1z6u_A NP95-like ring finger p 97.9 5.5E-06 1.9E-10 76.3 4.6 70 396-465 74-146 (150)
21 1jm7_A BRCA1, breast cancer ty 97.9 5.2E-06 1.8E-10 71.6 2.9 69 396-464 17-89 (112)
22 2ckl_A Polycomb group ring fin 97.8 1.8E-05 6.2E-10 68.2 4.8 70 395-464 10-85 (108)
23 3lrq_A E3 ubiquitin-protein li 97.8 1.4E-05 4.6E-10 68.4 3.7 71 395-465 17-90 (100)
24 2ecv_A Tripartite motif-contai 97.6 4.8E-06 1.7E-10 67.8 -0.9 62 396-457 15-83 (85)
25 3hct_A TNF receptor-associated 97.6 1.9E-05 6.5E-10 69.3 2.8 68 395-462 13-82 (118)
26 2ecw_A Tripartite motif-contai 97.6 9.1E-06 3.1E-10 66.1 0.1 62 396-457 15-83 (85)
27 2ckl_B Ubiquitin ligase protei 97.6 3.6E-05 1.2E-09 71.3 3.7 73 393-465 47-123 (165)
28 3m62_A Ubiquitin conjugation f 97.5 4.6E-05 1.6E-09 88.0 4.5 67 398-464 889-957 (968)
29 2egp_A Tripartite motif-contai 97.5 6.9E-06 2.4E-10 66.3 -1.9 62 396-457 8-77 (79)
30 4ayc_A E3 ubiquitin-protein li 97.3 7.4E-05 2.5E-09 67.3 2.4 60 398-459 51-111 (138)
31 3hcs_A TNF receptor-associated 97.3 0.00011 3.8E-09 68.2 2.8 68 395-462 13-82 (170)
32 2yur_A Retinoblastoma-binding 97.2 0.00021 7.3E-09 57.4 3.8 59 394-452 9-72 (74)
33 2djb_A Polycomb group ring fin 97.2 0.00019 6.7E-09 57.1 3.5 60 393-452 8-69 (72)
34 2csy_A Zinc finger protein 183 97.2 0.00011 3.8E-09 59.9 2.1 58 396-454 11-69 (81)
35 1rmd_A RAG1; V(D)J recombinati 97.1 0.00021 7.2E-09 62.1 3.3 57 395-451 18-76 (116)
36 3ng2_A RNF4, snurf, ring finge 97.0 0.00023 7.8E-09 56.1 2.3 49 404-452 14-70 (71)
37 3l11_A E3 ubiquitin-protein li 97.0 0.00024 8.2E-09 61.7 2.2 69 396-464 11-88 (115)
38 2ecy_A TNF receptor-associated 97.0 0.00041 1.4E-08 54.2 3.0 54 396-449 11-66 (66)
39 2xeu_A Ring finger protein 4; 96.9 0.00027 9.2E-09 54.3 1.9 39 414-452 24-63 (64)
40 1g25_A CDK-activating kinase a 96.9 0.00036 1.2E-08 54.4 2.0 49 404-452 7-62 (65)
41 2ct2_A Tripartite motif protei 96.9 0.00043 1.5E-08 56.7 2.6 60 395-454 10-80 (88)
42 2ysl_A Tripartite motif-contai 96.5 0.0011 3.9E-08 52.3 2.4 54 395-448 15-72 (73)
43 3knv_A TNF receptor-associated 96.0 0.0016 5.4E-08 59.2 1.1 66 395-460 26-102 (141)
44 2ect_A Ring finger protein 126 95.7 0.0041 1.4E-07 49.9 2.3 49 403-451 18-70 (78)
45 4ap4_A E3 ubiquitin ligase RNF 95.7 0.0034 1.2E-07 54.7 1.7 50 403-452 10-67 (133)
46 2ysj_A Tripartite motif-contai 95.4 0.0074 2.5E-07 46.4 2.7 44 396-439 16-63 (63)
47 2ea6_A Ring finger protein 4; 95.4 0.0083 2.8E-07 46.5 2.8 47 398-444 13-67 (69)
48 4ap4_A E3 ubiquitin ligase RNF 95.3 0.0049 1.7E-07 53.7 1.5 39 414-452 93-132 (133)
49 2ecj_A Tripartite motif-contai 95.3 0.0087 3E-07 44.9 2.6 44 396-439 11-58 (58)
50 2d8t_A Dactylidin, ring finger 95.3 0.0024 8.3E-08 50.5 -0.5 46 402-447 17-63 (71)
51 2ecn_A Ring finger protein 141 95.1 0.0031 1.1E-07 49.5 -0.3 51 397-448 12-63 (70)
52 1chc_A Equine herpes virus-1 r 94.8 0.013 4.4E-07 45.6 2.3 36 409-444 14-51 (68)
53 2ecm_A Ring finger and CHY zin 94.6 0.015 5.1E-07 43.1 2.3 32 413-444 22-54 (55)
54 2kiz_A E3 ubiquitin-protein li 94.1 0.02 7E-07 44.6 2.0 35 411-445 28-63 (69)
55 1x4j_A Ring finger protein 38; 93.9 0.024 8.4E-07 45.0 2.3 34 413-446 39-73 (75)
56 1bor_A Transcription factor PM 93.6 0.012 4.2E-07 44.5 -0.0 42 403-446 9-50 (56)
57 2l0b_A E3 ubiquitin-protein li 93.6 0.027 9.1E-07 46.9 2.0 32 413-444 56-88 (91)
58 1iym_A EL5; ring-H2 finger, ub 93.3 0.027 9.1E-07 41.8 1.4 32 413-444 21-54 (55)
59 1e4u_A Transcriptional repress 92.7 0.085 2.9E-06 43.0 3.7 47 402-448 13-65 (78)
60 2ecg_A Baculoviral IAP repeat- 92.6 0.051 1.8E-06 43.4 2.2 45 398-445 23-68 (75)
61 4ic3_A E3 ubiquitin-protein li 92.4 0.03 1E-06 44.8 0.6 45 397-444 21-66 (74)
62 2hbt_A EGL nine homolog 1; pro 91.4 4.7 0.00016 39.5 15.3 176 104-336 12-213 (247)
63 1v87_A Deltex protein 2; ring- 91.0 0.11 3.7E-06 44.4 2.7 30 415-444 58-93 (114)
64 2y1n_A E3 ubiquitin-protein li 90.4 0.088 3E-06 55.5 1.8 46 403-448 335-382 (389)
65 2ecl_A Ring-box protein 2; RNF 90.1 0.089 3E-06 42.8 1.2 34 413-446 42-77 (81)
66 2ep4_A Ring finger protein 24; 89.7 0.17 5.9E-06 39.7 2.6 33 413-445 31-64 (74)
67 2vje_B MDM4 protein; proto-onc 89.2 0.12 4.1E-06 40.1 1.3 35 410-444 17-55 (63)
68 2yho_A E3 ubiquitin-protein li 87.3 0.14 4.8E-06 41.6 0.6 45 398-445 16-61 (79)
69 2vje_A E3 ubiquitin-protein li 86.4 0.21 7.3E-06 38.8 1.1 36 409-444 17-56 (64)
70 2ea5_A Cell growth regulator w 86.0 0.3 1E-05 38.5 1.8 36 407-445 22-58 (68)
71 3dpl_R Ring-box protein 1; ubi 85.6 0.29 9.8E-06 42.2 1.6 31 414-444 69-100 (106)
72 2rg4_A Uncharacterized protein 81.6 4.5 0.00015 38.8 8.5 43 278-338 167-209 (216)
73 2d8s_A Cellular modulator of i 81.4 0.52 1.8E-05 38.5 1.5 36 411-446 28-71 (80)
74 3dkq_A PKHD-type hydroxylase S 80.0 3.1 0.00011 41.0 6.8 49 268-336 147-195 (243)
75 3i3q_A Alpha-ketoglutarate-dep 79.0 9.2 0.00031 36.7 9.6 115 168-335 77-202 (211)
76 3t6p_A Baculoviral IAP repeat- 77.4 0.46 1.6E-05 49.2 -0.0 42 401-445 296-338 (345)
77 4a0k_B E3 ubiquitin-protein li 76.3 0.53 1.8E-05 41.4 0.0 31 414-444 80-111 (117)
78 2iuw_A Alkylated repair protei 69.3 12 0.00042 36.2 8.0 86 223-336 127-230 (238)
79 1wim_A KIAA0161 protein; ring 68.3 1.9 6.6E-05 35.5 1.6 28 417-444 25-65 (94)
80 3s57_A Alpha-ketoglutarate-dep 63.0 17 0.00059 34.4 7.4 84 223-334 101-201 (204)
81 2ct0_A Non-SMC element 1 homol 63.0 3.6 0.00012 33.2 2.2 28 417-444 33-63 (74)
82 3k1l_B Fancl; UBC, ring, RWD, 62.0 2.6 9E-05 43.8 1.5 30 416-445 332-373 (381)
83 3i2d_A E3 SUMO-protein ligase 60.7 4.6 0.00016 42.2 3.1 66 396-461 245-316 (371)
84 3tht_A Alkylated DNA repair pr 60.3 17 0.00057 37.5 7.2 98 223-338 199-315 (345)
85 4fo9_A E3 SUMO-protein ligase 46.4 11 0.00037 39.2 3.1 74 395-468 210-289 (360)
86 3itq_A Prolyl 4-hydroxylase, a 41.7 91 0.0031 29.7 8.7 65 259-336 143-212 (216)
87 3vk6_A E3 ubiquitin-protein li 41.5 9.8 0.00033 32.6 1.5 31 414-444 16-48 (101)
88 2jig_A Prolyl-4 hydroxylase; h 34.2 1E+02 0.0035 28.9 7.7 48 279-337 170-218 (224)
89 4ayb_P DNA-directed RNA polyme 34.1 3.6 0.00012 30.6 -2.0 28 415-443 6-33 (48)
90 2dbn_A Hypothetical protein YB 23.0 34 0.0012 36.7 2.2 57 84-147 97-153 (461)
91 1vq8_Q 50S ribosomal protein L 21.5 29 0.00098 29.5 1.0 13 513-525 33-45 (96)
92 2gmg_A Hypothetical protein PF 20.0 11 0.00038 32.5 -1.9 30 409-442 64-93 (105)
No 1
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=2e-58 Score=474.89 Aligned_cols=267 Identities=22% Similarity=0.310 Sum_probs=227.8
Q ss_pred CCCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC------CCCc
Q 009001 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG------KGSR 156 (547)
Q Consensus 83 ~~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~------~~~r 156 (547)
|+...||+|||+.+.+ .+++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++
T Consensus 2 m~~~~iPvIDls~~~~----~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~ 77 (312)
T 3oox_A 2 MSTSAIDPVSFSLYAK----DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGAR 77 (312)
T ss_dssp --CCSSCCEETHHHHH----CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTS
T ss_pred CCCCCCCeEEChHhcc----cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcc
Confidence 3467899999998754 46788999999999999999999999999999999999999999999832 3457
Q ss_pred Cccccc-C----------------Cc------------ccccCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCCh
Q 009001 157 GVYMYR-A----------------GR------------ALEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRS 203 (547)
Q Consensus 157 GYy~~~-~----------------G~------------~~n~WP~~-P---~~m~~y~~~m~~la~~LL~~IA~~LGL~~ 203 (547)
||.... + +. ..|.||+. | +.+++|+++|.+++.+||++||++||+++
T Consensus 78 Gy~~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~ 157 (312)
T 3oox_A 78 GYIPFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLER 157 (312)
T ss_dssp EEECCCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred ccccccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 763210 0 00 12469976 3 89999999999999999999999999999
Q ss_pred hHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEe
Q 009001 204 DVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLA 282 (547)
Q Consensus 204 ~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~V 282 (547)
++|.+++++ +. +.+|++|||+++.+.. + .|+++|||+|+||||+||. +||||++++|+|++|
T Consensus 158 ~~f~~~~~~-~~------~~lr~~~Ypp~~~~~~-------~---~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V 220 (312)
T 3oox_A 158 DFFKPTVQD-GN------SVLRLLHYPPIPKDAT-------G---VRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPI 220 (312)
T ss_dssp TTTHHHHTT-CC------CEEEEEEECCCSSCCC------------CEEEECCCSSEEEEECCTTSCEEEECTTSCEEEC
T ss_pred HHHHHHhcC-Cc------ceeeeEecCCCCCCcC-------C---cCccceecCceEEEEeEcCcCceEEECCCCcEEEC
Confidence 999998876 32 6899999999876421 1 3589999999999999995 999999999999999
Q ss_pred ccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCC-Cc
Q 009001 283 DGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV-PI 361 (547)
Q Consensus 283 pp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~-~i 361 (547)
+|. ||+||||+||+|++||||+|||+.|||+.+.... ...+|||++||++|+.|++|.|+++|++. ++|++|+ +|
T Consensus 221 ~p~--pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~-~~~~R~Sia~F~~P~~d~~i~pl~~~v~~-~~p~~y~~~~ 296 (312)
T 3oox_A 221 NPP--PGCLVINIGDMLERLTNNVLPSTVHRVVNPPPER-RGVPRYSTPFFLHFASDYEIKTLQNCVTA-ENPDRYPESI 296 (312)
T ss_dssp CCC--SSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGG-TTSCEEECCEEECCCTTCEECCCGGGCCS-SSCCSCSSCE
T ss_pred CCC--CCeEEEEhHHHHHHHhCCeecCCCceEeCCCccC-CCCCEEEEEEEecCCCCcEEecCccccCC-CCcccCCCCe
Confidence 999 9999999999999999999999999998753211 24689999999999999999999999854 5799999 99
Q ss_pred cHHHHHHHHHHhh
Q 009001 362 SVSQFMDDLSAEE 374 (547)
Q Consensus 362 t~ge~~~~~~~~~ 374 (547)
|++||+..++.+.
T Consensus 297 t~~eyl~~r~~~~ 309 (312)
T 3oox_A 297 TADEFLQQRLREI 309 (312)
T ss_dssp EHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHh
Confidence 9999999999865
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=3.3e-57 Score=474.17 Aligned_cols=267 Identities=19% Similarity=0.251 Sum_probs=229.8
Q ss_pred CCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccC--------CCCcC
Q 009001 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVG--------KGSRG 157 (547)
Q Consensus 86 ~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~--------~~~rG 157 (547)
..||+|||+.+.+++++.+++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|. ..++|
T Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~G 124 (356)
T 1gp6_A 45 PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124 (356)
T ss_dssp CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSE
T ss_pred CCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccc
Confidence 3699999999977665667889999999999999999999999999999999999999999999832 24678
Q ss_pred cccccC----C-----------------cccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcC
Q 009001 158 VYMYRA----G-----------------RALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDD 212 (547)
Q Consensus 158 Yy~~~~----G-----------------~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~ 212 (547)
|..... + ...|.||..+ +.+++|+++|.+++.+||++||++|||++++|.+++..
T Consensus 125 y~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 204 (356)
T 1gp6_A 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGG 204 (356)
T ss_dssp EECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTH
T ss_pred cCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 643210 0 0134599864 89999999999999999999999999999999998862
Q ss_pred CCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCCcE
Q 009001 213 TPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDL 291 (547)
Q Consensus 213 ~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~l 291 (547)
. ....+.||++|||+++.++. . .|+++|||+|+||||+||. +||||+ ++|+|++|+|. ||+|
T Consensus 205 ~----~~~~~~lrl~~YPp~~~~~~--~--------~g~~~HtD~g~lTlL~qd~v~GLQV~-~~g~Wi~V~p~--pgal 267 (356)
T 1gp6_A 205 L----EELLLQMKINYYPKCPQPEL--A--------LGVEAHTDVSALTFILHNMVPGLQLF-YEGKWVTAKCV--PDSI 267 (356)
T ss_dssp H----HHCEEEEEEEEECCCSSTTT--C--------CSEEEECCCSSEEEEEECSCCCEEEE-ETTEEEECCCC--TTCE
T ss_pred c----CCccceeeeeecCCCCCccc--c--------cCcCCccCCCeEEEEEEcCCCCeEEe-cCCcEEECcCC--CCeE
Confidence 0 01126899999999875422 1 3589999999999999995 999999 48999999999 9999
Q ss_pred EEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCc-EEeCCcccccCCCCCCCCCCccHHHHHHHH
Q 009001 292 LLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNA-ILDCSPIAAAGHVIPQSYVPISVSQFMDDL 370 (547)
Q Consensus 292 vVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~da-vI~Plp~~~~g~~~p~~y~~it~ge~~~~~ 370 (547)
|||+||+||+||||+|||++|||+.+ ..++|||++||++|+.|+ +|.|++++++. ++|.+|++||++||+..+
T Consensus 268 vVNiGD~l~~~TnG~~kS~~HRVv~~-----~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~-~~p~~y~~~t~~eyl~~~ 341 (356)
T 1gp6_A 268 VMHIGDTLEILSNGKYKSILHRGLVN-----KEKVRISWAVFCEPPKDKIVLKPLPEMVSV-ESPAKFPPRTFAQHIEHK 341 (356)
T ss_dssp EEEECHHHHHHTTTSSCCCCEEECCC-----SSCCEEEEEEEEECCTTTCEECCCGGGCCS-SSCCSSCCEEHHHHHHHH
T ss_pred EEEeccHHHHhcCCEeeccCceecCC-----CCCCEEEEEEeecCCCCCcEEeCChhhcCC-CCCccCCCccHHHHHHHH
Confidence 99999999999999999999999974 357999999999999999 99999998854 579999999999999998
Q ss_pred HHhhc
Q 009001 371 SAEED 375 (547)
Q Consensus 371 ~~~~~ 375 (547)
+...+
T Consensus 342 ~~~~~ 346 (356)
T 1gp6_A 342 LFGKE 346 (356)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88765
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=4e-56 Score=459.67 Aligned_cols=265 Identities=14% Similarity=0.157 Sum_probs=220.8
Q ss_pred CCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCC---CCcCccccc
Q 009001 86 PRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGK---GSRGVYMYR 162 (547)
Q Consensus 86 ~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~---~~rGYy~~~ 162 (547)
..||+|||+.+. ++.+++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|.+ ..+||....
T Consensus 2 ~~iPvIDls~l~---~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~~Gy~~~~ 78 (319)
T 1w9y_A 2 ENFPIISLDKVN---GVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQ 78 (319)
T ss_dssp CCCCEEEGGGGG---STTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEECcccC---cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCccc
Confidence 469999999885 24578899999999999999999999999999999999999999999998432 123543210
Q ss_pred -----------------CCcccccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCccc
Q 009001 163 -----------------AGRALEDWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVS 221 (547)
Q Consensus 163 -----------------~G~~~n~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p~~~~~~~ 221 (547)
.....|.||..| +.|++|+++|.+++.+||++||++||+++++|.+++++. ++..
T Consensus 79 ~e~~~~d~ke~~~~~~~p~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~----~~~~ 154 (319)
T 1w9y_A 79 AEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGS----KGPN 154 (319)
T ss_dssp CCGGGCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTT----TCCE
T ss_pred ccCCCCChhhheeeecCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc----CCcc
Confidence 001245699864 899999999999999999999999999999999988641 0123
Q ss_pred ceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC-C-CCeeEEcCCCCeEEeccCCCCCcEEEEcchhh
Q 009001 222 SSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PGLQVCDPNGRWYLADGGSAPGDLLLITGKAL 299 (547)
Q Consensus 222 s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD-~-~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~L 299 (547)
+.+|++|||+++.++. . .|+++|||+|+||||+|| . +||||+ ++|+|++|+|. ||+||||+||+|
T Consensus 155 ~~lrl~~YPp~~~~~~--~--------~g~~~HtD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p~--pgalvVNiGD~l 221 (319)
T 1w9y_A 155 FGTKVSNYPPCPKPDL--I--------KGLRAHTDAGGIILLFQDDKVSGLQLL-KDGQWIDVPPM--RHSIVVNLGDQL 221 (319)
T ss_dssp EEEEEEECCCCSCGGG--G--------SSCCCBCCSSSEEEEEESSSCCCEEEE-ETTEEEECCCC--TTCEEEEECHHH
T ss_pred ceeEEEecCCCccccc--c--------cccccccCCCceEEEEecCCCCeeeEe-eCCeEEEcccC--CCcEEEEhHHHH
Confidence 6899999999875421 1 358999999999999995 3 999998 58999999999 999999999999
Q ss_pred hhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCC--CCCCCCCCccHHHHHHHHHHhhc
Q 009001 300 SHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGH--VIPQSYVPISVSQFMDDLSAEED 375 (547)
Q Consensus 300 e~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~--~~p~~y~~it~ge~~~~~~~~~~ 375 (547)
|+||||+|||+.|||+.+ ..++|||++||++|+.|++|.|++++++.+ ++|.+|+++|++||+..++...+
T Consensus 222 ~~~SnG~~kS~~HRVv~~-----~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~ 294 (319)
T 1w9y_A 222 EVITNGKYKSVMHRVIAQ-----KDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKF 294 (319)
T ss_dssp HHHTTTSSCCCCEEECCC-----SSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTC
T ss_pred HHHhCCeeecccceecCC-----CCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhc
Confidence 999999999999999973 357899999999999999999999998542 14899999999999988776554
No 4
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=2.3e-55 Score=455.78 Aligned_cols=263 Identities=13% Similarity=0.115 Sum_probs=223.4
Q ss_pred CCCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHH-hcCcccccCCC-CcCccc
Q 009001 83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLY-FRTKSQTVGKG-SRGVYM 160 (547)
Q Consensus 83 ~~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~F-F~LP~Ee~~~~-~rGYy~ 160 (547)
++...||+|||+.+.+++++.+++++++|.+||++||||||+|||| +++++++.+++| |+||.|+|.+. .+||..
T Consensus 4 ~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~~Gy~~ 80 (331)
T 1odm_A 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAIRAYNK 80 (331)
T ss_dssp CCBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBCTTTCT
T ss_pred ccCCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhhcCCCc
Confidence 3456799999999977766678889999999999999999999999 899999999999 99999984321 144421
Q ss_pred cc-----C-------C---------------------------cccccCCCC---h---HHHHHHHHHHHHHHHHHHHHH
Q 009001 161 YR-----A-------G---------------------------RALEDWDSS---P---PCMADIFRCMGKAARAALFAI 195 (547)
Q Consensus 161 ~~-----~-------G---------------------------~~~n~WP~~---P---~~m~~y~~~m~~la~~LL~~I 195 (547)
.. . + ..+|.||.. | +.|++|+++|.+++..||++|
T Consensus 81 ~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~l 160 (331)
T 1odm_A 81 EHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGY 160 (331)
T ss_dssp TCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 0 014569975 4 899999999999999999999
Q ss_pred HHhCCCChhHHhhhhcCCCCCCCcccceee--eeeec------C---CCCCCCCCcccccCCCCCCCCCCcccccEEEEe
Q 009001 196 ARHLRLRSDVFNHLLDDTPLPANEVSSSVL--VATYS------P---ASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLIS 264 (547)
Q Consensus 196 A~~LGL~~~~f~~~~~~~p~~~~~~~s~lR--ll~YP------p---~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~ 264 (547)
|++||+++++|.+++++ +. +.+| ++||| + ++.++ .+. .|+++|||+|+||||+
T Consensus 161 a~~Lgl~~~~f~~~~~~-~~------~~lr~~l~~YP~~~~~~p~~~~~~~~-~~~--------~g~~~HtD~g~lTlL~ 224 (331)
T 1odm_A 161 ALALGKEENFFARHFKP-DD------TLASVVLIRYPYLDPYPEAAIKTAAD-GTK--------LSFEWHEDVSLITVLY 224 (331)
T ss_dssp HHHTTSCTTTTGGGCCT-TT------CCCEEEEEEECCCSSCCGGGCEECTT-SCE--------EEEEEECCSSSEEEEE
T ss_pred HHHhCCCHHHHHHHhcC-cH------HHHHHHHhhCCCcccccccccCCCcc-ccc--------cccccccCCCeEEEEe
Confidence 99999999999998866 32 6899 99999 6 43321 112 3589999999999999
Q ss_pred eCC-CCeeEEcCCCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEe
Q 009001 265 SDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILD 343 (547)
Q Consensus 265 qD~-~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~ 343 (547)
||. +||||++++| |++|+|. ||+||||+||+||+||||+|||+.|||+.+ .++|||++||++|+.|++|.
T Consensus 225 qd~v~GLQV~~~~g-Wi~V~p~--pgalvVNiGD~l~~~TnG~~kS~~HRVv~~------~~~R~Sia~F~~P~~d~~i~ 295 (331)
T 1odm_A 225 QSNVQNLQVETAAG-YQDIEAD--DTGYLINCGSYMAHLTNNYYKAPIHRVKWV------NAERQSLPFFVNLGYDSVID 295 (331)
T ss_dssp ECSSCCEEEEETTE-EEECCCC--TTSEEEEECHHHHHHTTTSSCCCCEEEECC------CSCEEEEEEEECCCTTCBCC
T ss_pred eCCCCCEEEEcCCC-eEECCCC--CCeEEEEccHHHHHHhCCEeeCCCceeCCC------CCCEEEEEEEEcCCCCCEEe
Confidence 996 9999999899 9999999 999999999999999999999999999852 56899999999999999999
Q ss_pred CCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 009001 344 CSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (547)
Q Consensus 344 Plp~~~~g~~~p~~y~~it~ge~~~~~~~~~~ 375 (547)
|++++++.. + .+|+++|++||+..+++..+
T Consensus 296 pl~~~~~~~-~-~~y~~~t~~e~l~~~~~~~~ 325 (331)
T 1odm_A 296 PFDPREPNG-K-SDREPLSYGDYLQNGLVSLI 325 (331)
T ss_dssp CCCTTSTTC-C-CSSCCCBHHHHHHHHHHHHH
T ss_pred CCCcccccc-c-cCCCCccHHHHHHHHHHHHH
Confidence 999987543 4 88999999999999988764
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=4.1e-55 Score=450.44 Aligned_cols=264 Identities=15% Similarity=0.100 Sum_probs=215.2
Q ss_pred CCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCc-cccc-------CCCCc
Q 009001 85 LPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTK-SQTV-------GKGSR 156 (547)
Q Consensus 85 ~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP-~Ee~-------~~~~r 156 (547)
...||+|||+.+.+++.. ++|.+||++||||||+||||+.++++++++.+++||+|| .|+| ...++
T Consensus 2 ~~~iPvIDls~l~~~~~~------~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~ 75 (311)
T 1dcs_A 2 DTTVPTFSLAELQQGLHQ------DEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRR 75 (311)
T ss_dssp CCCCCEEEHHHHHTTCSH------HHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSS
T ss_pred CCCCcEEEchhhcCCCHH------HHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCC
Confidence 357999999988654321 389999999999999999999999999999999999999 8873 23468
Q ss_pred CcccccC----------Cc-----------ccccCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhCCC----ChhHHhh
Q 009001 157 GVYMYRA----------GR-----------ALEDWDSSP---PCMADIFRCMGKAARAALFAIARHLRL----RSDVFNH 208 (547)
Q Consensus 157 GYy~~~~----------G~-----------~~n~WP~~P---~~m~~y~~~m~~la~~LL~~IA~~LGL----~~~~f~~ 208 (547)
||..... +. .+|.|| .| +.|++|+++|.+++.+||++||++||+ ++++|.+
T Consensus 76 Gy~~~~~e~~~~~~~~~~~~d~~E~~~~~~~~n~wP-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~f~~ 154 (311)
T 1dcs_A 76 GFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFP-SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLD 154 (311)
T ss_dssp EEEEC-----------------CEEEEECSSSCCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHS
T ss_pred ceeeccccccccccCCCCCCCcceeeeccCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcHhHHhh
Confidence 8754210 00 135699 65 899999999999999999999999999 8888876
Q ss_pred hhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeC-C-CC---eeEEcCCCCeEEec
Q 009001 209 LLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSD-S-PG---LQVCDPNGRWYLAD 283 (547)
Q Consensus 209 ~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD-~-~G---LQV~~~~G~Wv~Vp 283 (547)
. . +.+|++|||+++.++..+ ....|+++|||+|+||||+|| . +| |||++ +|+|++|+
T Consensus 155 ~--~---------~~lrl~~YPp~~~~~~~~------~~~~g~~~HtD~g~lTlL~qd~~v~G~~~LqV~~-~g~W~~V~ 216 (311)
T 1dcs_A 155 C--E---------PLLRFRYFPQVPEHRSAE------EQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV-GGAFTDLP 216 (311)
T ss_dssp C--C---------CEEEEEEECC-----------------CCEEEEEECSSEEEEEEECCTTCCCCEEEEE-TTEEEECC
T ss_pred c--c---------hhhheecCCCCCcccccC------ccccccccccCCCeEEEEecCCCCCCceeEEEEe-CCEEEeCc
Confidence 5 1 589999999987542111 002358999999999999999 5 99 99998 89999999
Q ss_pred cCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCC--CCc
Q 009001 284 GGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSY--VPI 361 (547)
Q Consensus 284 p~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y--~~i 361 (547)
|. ||+||||+||+||+||||+|||+.|||+.+.......++|||++||++|+.|++|. +|++++. ++|.+| +++
T Consensus 217 p~--pg~lvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~~d~~i~-l~~~~~~-~~p~~y~~~~~ 292 (311)
T 1dcs_A 217 YR--PDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADFTFS-VPLAREC-GFDVSLDGETA 292 (311)
T ss_dssp CC--TTCEEEEECHHHHHHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCCTTCEEE-HHHHHHT-TCCCCCCSSEE
T ss_pred CC--CCeEEEEHHHHHHHHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCCCCcEEe-CCcccCC-CCccccCCCCc
Confidence 99 99999999999999999999999999997521101157899999999999999999 9988754 478999 999
Q ss_pred cHHHHHHHHHHhhcCC
Q 009001 362 SVSQFMDDLSAEEDGL 377 (547)
Q Consensus 362 t~ge~~~~~~~~~~~~ 377 (547)
|++||+..++.+.|..
T Consensus 293 t~~ey~~~~~~~~~~~ 308 (311)
T 1dcs_A 293 TFQDWIGGNYVNIRRT 308 (311)
T ss_dssp EHHHHHCSSCCCEECC
T ss_pred cHHHHHHHHHHHHhcc
Confidence 9999999888877753
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=1.5e-52 Score=425.74 Aligned_cols=248 Identities=16% Similarity=0.240 Sum_probs=200.9
Q ss_pred CcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccc----cCCCCcCccccc
Q 009001 87 RVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQT----VGKGSRGVYMYR 162 (547)
Q Consensus 87 ~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee----~~~~~rGYy~~~ 162 (547)
.||+|||+.. +.+++|.+||++||||||+||||+.++++++++.+++||+++... ....++||....
T Consensus 3 ~IPvIDls~~---------~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~le~K~k~~~~~~~~~GY~~~~ 73 (280)
T 3on7_A 3 KLETIDYRAA---------DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFMFNRETHDGFFPAS 73 (280)
T ss_dssp -CCEEETTST---------THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTSGGGGGGBCCTTTCCEEECCC
T ss_pred CCCEEECCCh---------hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhhHHHHHhccCCCCCCccccCc
Confidence 6999999863 136899999999999999999999999999999999999983322 123478976432
Q ss_pred CCc------ccc--------cCCCCh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCh--hH---HhhhhcCCCCCCCc
Q 009001 163 AGR------ALE--------DWDSSP----PCMADIFRCMGKAARAALFAIARHLRLRS--DV---FNHLLDDTPLPANE 219 (547)
Q Consensus 163 ~G~------~~n--------~WP~~P----~~m~~y~~~m~~la~~LL~~IA~~LGL~~--~~---f~~~~~~~p~~~~~ 219 (547)
..+ ..+ .||..| +.+++|+++|.+++++||++||++||++. ++ |.+++++..
T Consensus 74 ~~e~~~~~~~~D~kE~~~~~p~~~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~----- 148 (280)
T 3on7_A 74 ISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSH----- 148 (280)
T ss_dssp --------CCCCSCEEEEECTTSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSCHHHHHTTCS-----
T ss_pred cccccCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHHHHHHhcCCc-----
Confidence 011 111 155443 89999999999999999999999999863 33 455565421
Q ss_pred ccceeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccccEEEEeeCC-CCeeEEcCCCCeEEeccCCCCCcEEEEcchh
Q 009001 220 VSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKA 298 (547)
Q Consensus 220 ~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~GlLTLL~qD~-~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~ 298 (547)
.+.+|++|||+++.++..+. .|+++|||+|+||||+||. +||||++++|+|++|+|. ||++|||+||+
T Consensus 149 -~~~lr~~~YP~~~~~~~~~~--------~g~~~HtD~g~lTlL~qd~~~GLqV~~~~g~W~~V~p~--pg~~vVNiGD~ 217 (280)
T 3on7_A 149 -KTLLRILHYPPMTGDEEMGA--------IRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSD--FGNIIINIGDM 217 (280)
T ss_dssp -SCEEEEEEECCCCTTCCCCS--------EEEEEECCCSSEEEEECCSCCCEEEECTTSCEEECCCC--TTCEEEEECHH
T ss_pred -cceEEEEECCCCCCccccCc--------ccccCCCCCCeEEEEEecCCCCeEEEcCCCCEEECcCC--CCEEEEEcChH
Confidence 25899999999986532222 3589999999999999995 999999999999999999 99999999999
Q ss_pred hhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCCCcEEeCCcccccCCCCCCCCCCccHHHHHHHHHHhhc
Q 009001 299 LSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEED 375 (547)
Q Consensus 299 Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~davI~Plp~~~~g~~~p~~y~~it~ge~~~~~~~~~~ 375 (547)
|++||||+|||+.|||+.+...+ ...+|||++||++|+.|++|.| +||++||+.+++.+..
T Consensus 218 l~~~Tng~~kS~~HRVv~~~~~~-~~~~R~Si~~F~~P~~d~~i~p---------------~ita~~~l~~rl~~~~ 278 (280)
T 3on7_A 218 LQEASDGYFPSTSHRVINPEGTD-KTKSRISLPLFLHPHPSVVLSE---------------RYTADSYLMERLRELG 278 (280)
T ss_dssp HHHHTTTSSCCCCEEEECCTTCC-TTSCEEECCEEECCCTTCBCSS---------------SCBHHHHHHHHHHHTT
T ss_pred HHHHhCCcccCCCceEeCCCCCC-CCCCeEEEEEEEcCCCCCEECC---------------CccHHHHHHHHHHHhc
Confidence 99999999999999999753211 2468999999999999999863 5899999999999864
No 7
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.07 E-value=8.4e-11 Score=98.58 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=63.9
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
.+..-+..||+.++|.|+|+++|||+|-..-|++++ +...|+.|+++++...|+||.+||.+++.++++
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999976 578999999999999999999999999999876
No 8
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.99 E-value=2e-10 Score=99.30 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=64.8
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
..+..-+..||+..+|.|+|+++|||+|-..-|++++ +...|+.|.++++...|+||.+||.+++.++.+
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 3566789999999999999999999999999999977 578999999999999999999999999999876
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=3.9e-10 Score=97.19 Aligned_cols=71 Identities=11% Similarity=0.187 Sum_probs=64.9
Q ss_pred ccchhhhcCcCcccccchhhhhccC-cccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHHHHHhhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCG-HSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cg-hsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~ 465 (547)
..+..-+..||+.++|.|+|+++|| |+|-..-|++++ +...|+.|.++++...|+||.+||.+++.++++.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 3456778999999999999999999 999999999977 5678999999999999999999999999998763
No 10
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=7.7e-10 Score=94.27 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=62.0
Q ss_pred cchhhhcCcCcccccchhhhhc-cCcccchhHHHHHHhhc-------cccc--cccc-cccCCcchhhHHHHHHHHHHhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLRKVIDTS-------RCTI--CSAE-IETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~-cghsfg~~~~~~~~~~~-------~c~~--c~~~-~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
++..-+..||+.++|.|+|+++ |||+|-..-|.++++.. .|+. |.+. ++...|+||.+||.+++.++++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 4556688999999999999996 99999999999988654 8999 9988 9999999999999999999765
No 11
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.87 E-value=1.2e-09 Score=104.11 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=64.8
Q ss_pred CccchhhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 394 EPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 394 ~~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
...+..-+..|||+.+|.|+|+++|||||....|.++++. .+||.|+++++...|+||++||.+++.++.+
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999998865 3699999999999999999999999999765
No 12
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.84 E-value=1e-09 Score=89.39 Aligned_cols=71 Identities=20% Similarity=0.405 Sum_probs=64.5
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHHh--hccccccccccccCCcchhhHHHHHHHHHHhhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID--TSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~ 465 (547)
+.+.+-+.-||..++|.|+++++|||+|-..-|+++++ ...|+.|.+++....|+||++||.+++.++++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 35667788899999999999999999999999999885 578999999999999999999999999998764
No 13
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=2.4e-08 Score=98.90 Aligned_cols=69 Identities=14% Similarity=0.283 Sum_probs=62.2
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
.....+..||+.++|.|+|+++|||||-..-|.++++. .+||.|.++++...|+||.+||.+++.|..+
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 34467889999999999999999999999999998864 3499999999999999999999999999865
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.43 E-value=1.7e-07 Score=78.50 Aligned_cols=75 Identities=23% Similarity=0.406 Sum_probs=65.3
Q ss_pred CCccchhhhcCcCcccccchhhhhc-cCcccchhHHHHHHhh---cccccccccc-ccCCcchhhHHHHHHHHHHhhhhh
Q 009001 393 KEPSLRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLRKVIDT---SRCTICSAEI-ETGSLVPNLALRAAAVAIKQEDDR 467 (547)
Q Consensus 393 ~~~slr~il~dp~~~~~~~d~~i~~-cghsfg~~~~~~~~~~---~~c~~c~~~~-~~~~~~pn~~lr~~~~~~~~~~~~ 467 (547)
..+.+..-+.=||-.++|.|+++++ |||+|-..=|+++++. ..|+.|.+++ ....+.||..|+.+++.++++.+.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 3456777888899999999999999 9999999999998743 5899999996 688999999999999999988543
No 15
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.19 E-value=4.3e-07 Score=71.58 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=48.9
Q ss_pred hcCcCcccccchhhhh-ccCcccchhHHHHHH-hhccccccccccccCCcchhhH
Q 009001 401 LSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLA 453 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~ 453 (547)
+..|||+++|.|.|++ +|||+|....|++++ +...|+.++++++..+|+||..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 5689999999999999 999999999999977 5678999999999999999865
No 16
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.06 E-value=2.8e-06 Score=85.08 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=60.6
Q ss_pred ccchhhhcCcCcccccchhhhh-ccCcccchhHHHHHHhh---ccccc--cccccccCCcchhhHHHHHHHHHH
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVIDT---SRCTI--CSAEIETGSLVPNLALRAAAVAIK 462 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~~~---~~c~~--c~~~~~~~~~~pn~~lr~~~~~~~ 462 (547)
.+++.-++.||+..+|.|+|++ .|||+|-...|.++++. ..||. |++.++..+|.||..|+-.++.++
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 3567778999999999999986 89999999999998865 47998 999999999999999998887654
No 17
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.04 E-value=2.9e-06 Score=72.05 Aligned_cols=71 Identities=18% Similarity=0.437 Sum_probs=62.1
Q ss_pred ccchhhhcCcCcccccchhhhh-ccCcccchhHHHHHHh-hccccccccccccCCcchhhHHHHHHHHHHhhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVID-TSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~~-~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~ 465 (547)
..+...+.=||-...+.|++++ +|||+|-..=|+++++ ...|+.|.+.+....+.||+.|+.+++.+++..
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 3455667788888899999888 8999999999999774 579999999999999999999999999998763
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.95 E-value=3.2e-06 Score=74.17 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=62.5
Q ss_pred ccchhhhcCcCcccccchhhhh-ccCcccchhHHHHHHhhccccccccccccCCcchhhHHHHHHHHHHhhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~ 465 (547)
..|+..+.=||-..++.|++++ +|||+|-..=|+++++ ..|++|.+.+....|.||+.|+.++..+++..
T Consensus 17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred HhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 3456777888889999999999 9999999999999887 89999999999999999999999999887653
No 19
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.95 E-value=5.1e-06 Score=73.45 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=60.4
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHh--hcccccccccccc-CCcchhhHHHHHHHHHHhhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID--TSRCTICSAEIET-GSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~~-~~~~pn~~lr~~~~~~~~~~ 465 (547)
.+..-+.=||-..++.|+++++|||+|-..=|+++++ ...|++|.+++.. ..+.||..|+.+++.+-...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 4556677899999999999999999999999999875 3489999999987 88999999999998776543
No 20
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.95 E-value=5.5e-06 Score=76.30 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=61.8
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHhhc--cccccccccccC-CcchhhHHHHHHHHHHhhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS--RCTICSAEIETG-SLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~~--~c~~c~~~~~~~-~~~pn~~lr~~~~~~~~~~ 465 (547)
.+..-+.=||-..++.|+++++|||+|-..=|.++++.. .|++|.+.+... .|.||+.|+.++..|..++
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTT
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHh
Confidence 355667888999999999999999999999999988654 799999999987 9999999999999887654
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.87 E-value=5.2e-06 Score=71.56 Aligned_cols=69 Identities=16% Similarity=0.438 Sum_probs=61.5
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHhhc----cccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS----RCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~~----~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
.++..+.=||-.+.+.|+++++|||+|-..=|.++++.. .|+.|.+++...++.+|+.|+..++.+.+.
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 556667778888889999999999999999999998764 799999999999999999999999988764
No 22
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.78 E-value=1.8e-05 Score=68.21 Aligned_cols=70 Identities=20% Similarity=0.417 Sum_probs=61.0
Q ss_pred ccchhhhcCcCcccccchhhhh-ccCcccchhHHHHHHh-hccccccccccccC----CcchhhHHHHHHHHHHhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVID-TSRCTICSAEIETG----SLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~~-~~~c~~c~~~~~~~----~~~pn~~lr~~~~~~~~~ 464 (547)
..|+.-+.=||-..++.|++++ +|||+|-..=|+++++ ...|+.|.+.+... .|.+|..|+.++..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 4566777788889999999998 9999999999999874 57899999999876 899999999999988764
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.77 E-value=1.4e-05 Score=68.38 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=62.9
Q ss_pred ccchhhhcCcCcccccchhhh-hccCcccchhHHHHHHhhc--cccccccccccCCcchhhHHHHHHHHHHhhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMV-VSCGHSFGGLMLRKVIDTS--RCTICSAEIETGSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i-~~cghsfg~~~~~~~~~~~--~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~ 465 (547)
.+|+..+.=||=..++.|+++ ++|||+|-..=|+++++.. .|+.|.+++..+.|++|..|..+++.+++..
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 467777778888888999999 9999999999999988654 8999999999999999999999998887663
No 24
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=4.8e-06 Score=67.75 Aligned_cols=62 Identities=21% Similarity=0.467 Sum_probs=52.7
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHh-------hccccccccccccCCcchhhHHHHH
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID-------TSRCTICSAEIETGSLVPNLALRAA 457 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~-------~~~c~~c~~~~~~~~~~pn~~lr~~ 457 (547)
.++..+.=||-...+.|+++++|||+|-..=|+++++ ...|+.|.+.+....+.||+.|+.+
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 4555566777788889999999999999999999775 4789999999999999999988654
No 25
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.64 E-value=1.9e-05 Score=69.31 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=59.4
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccccCCcchhhHHHHHHHHHH
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVPNLALRAAAVAIK 462 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~~~~~~pn~~lr~~~~~~~ 462 (547)
+.+..-+.=||-..++.|+++++|||+|-..=|.++++. ..|++|.+++....++||..|+..+..++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 366677788899999999999999999999999998754 38999999999999999999988877655
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.60 E-value=9.1e-06 Score=66.10 Aligned_cols=62 Identities=21% Similarity=0.480 Sum_probs=52.8
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHh-------hccccccccccccCCcchhhHHHHH
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID-------TSRCTICSAEIETGSLVPNLALRAA 457 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~-------~~~c~~c~~~~~~~~~~pn~~lr~~ 457 (547)
.++.-+.=||-...+.|+++++|||+|-..=|+++++ ...|+.|.+.++.+.+.||+.|+.+
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 4555667778888889999999999999999999775 4689999999999999999988654
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.56 E-value=3.6e-05 Score=71.26 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=60.2
Q ss_pred CCccchhhhcCcCcccccchhhhh-ccCcccchhHHHHHHh--hccccccccccc-cCCcchhhHHHHHHHHHHhhh
Q 009001 393 KEPSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVID--TSRCTICSAEIE-TGSLVPNLALRAAAVAIKQED 465 (547)
Q Consensus 393 ~~~slr~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~~--~~~c~~c~~~~~-~~~~~pn~~lr~~~~~~~~~~ 465 (547)
...++..-+.=||-...+.|++++ +|||+|-..=|.++++ ...|++|..++. .+.|.||..|+.++..+....
T Consensus 47 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp ---CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred chhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 345677788889999999999988 9999999999999886 567999999984 678999999999999987653
No 28
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.52 E-value=4.6e-05 Score=88.05 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=62.0
Q ss_pred hhhhcCcCcccccchhhhhccC-cccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHHHHHhh
Q 009001 398 RSVLSDPLSGAFLDDAMVVSCG-HSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 398 r~il~dp~~~~~~~d~~i~~cg-hsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~ 464 (547)
.+-+.+|||.++|.|.||++.| +++-...|++++ +-.+||.=+++++...|+||++||++++.+..+
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQ 957 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHH
Confidence 4679999999999999999998 699999999977 567899999999999999999999999999876
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.50 E-value=6.9e-06 Score=66.32 Aligned_cols=62 Identities=19% Similarity=0.396 Sum_probs=52.4
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHh--------hccccccccccccCCcchhhHHHHH
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID--------TSRCTICSAEIETGSLVPNLALRAA 457 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~--------~~~c~~c~~~~~~~~~~pn~~lr~~ 457 (547)
.|+.-+.=||-.+.+.|+++++|||+|-..=|+++++ ...|+.|.+++....|.||+.|+.+
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 4455566777788899999999999999999998775 4689999999999999999988643
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.32 E-value=7.4e-05 Score=67.35 Aligned_cols=60 Identities=20% Similarity=0.446 Sum_probs=46.0
Q ss_pred hhhhcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCcchhhHHHHHHH
Q 009001 398 RSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLALRAAAV 459 (547)
Q Consensus 398 r~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~lr~~~~ 459 (547)
..-+.=||-...+.|+++++|||+|-..=|.+++ ....||+|.+++.... +|+.+...+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~i~ 111 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT--YSLVLDNCIN 111 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE--ECHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC--CccchhHHHH
Confidence 3445678888899999999999999999999977 5688999999987432 3444444433
No 31
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.25 E-value=0.00011 Score=68.20 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=59.7
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccccCCcchhhHHHHHHHHHH
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVPNLALRAAAVAIK 462 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~~~~~~pn~~lr~~~~~~~ 462 (547)
+.|.+.+.=||-..++.|+++++|||+|=..=|.++++. ..|++|..++..+.++||.+++..+..++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 367788889999999999999999999999999998854 38999999999999999999888776543
No 32
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.21 E-value=0.00021 Score=57.37 Aligned_cols=59 Identities=19% Similarity=0.415 Sum_probs=49.2
Q ss_pred CccchhhhcCcCcccccchhhhhc-cCcccchhHHHHHHhh---ccccccccc-cccCCcchhh
Q 009001 394 EPSLRSVLSDPLSGAFLDDAMVVS-CGHSFGGLMLRKVIDT---SRCTICSAE-IETGSLVPNL 452 (547)
Q Consensus 394 ~~slr~il~dp~~~~~~~d~~i~~-cghsfg~~~~~~~~~~---~~c~~c~~~-~~~~~~~pn~ 452 (547)
.+.++.-+.=||-..++.|+++++ |||+|=..=|+++++. ..|+.|.++ +..+.+++|.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 72 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPS 72 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCTT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccCC
Confidence 345667778888899999999999 9999999999998875 489999998 4467777764
No 33
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00019 Score=57.14 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=51.0
Q ss_pred CCccchhhhcCcCcccccchhhhh-ccCcccchhHHHHHH-hhccccccccccccCCcchhh
Q 009001 393 KEPSLRSVLSDPLSGAFLDDAMVV-SCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 393 ~~~slr~il~dp~~~~~~~d~~i~-~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~ 452 (547)
..+.|+..+.=||=.+.+.|++++ +|||+|-..=|++++ ....|++|.+.+....+++|+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 345566777788888899999987 999999999999977 467999999999999888775
No 34
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00011 Score=59.85 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=47.2
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCcchhhHH
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNLAL 454 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~~l 454 (547)
.+..-+.=||-...+.|+++++|||+|=..=|.+++ ....|++|.+.+. +.+.||..|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHH
Confidence 344456667788888999999999999999999976 4678999999997 777788444
No 35
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.15 E-value=0.00021 Score=62.15 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=49.8
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccccCCcchh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIETGSLVPN 451 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~~~~~~pn 451 (547)
..++.-+.=||-..++.|+++++|||+|-..=|.++++. ..|++|.+++....+.++
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 456677888999999999999999999999999998864 689999999998887655
No 36
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.04 E-value=0.00023 Score=56.06 Aligned_cols=49 Identities=22% Similarity=0.507 Sum_probs=40.5
Q ss_pred cCcccccchh-------hhhccCcccchhHHHHHH-hhccccccccccccCCcchhh
Q 009001 404 PLSGAFLDDA-------MVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 404 p~~~~~~~d~-------~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~ 452 (547)
||=.+.+.+. ++++|||+|-..=|++++ +...|++|.+++....+.|+|
T Consensus 14 ~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 14 PICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred cccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 3444555565 788999999999999976 668999999999999998876
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.99 E-value=0.00024 Score=61.68 Aligned_cols=69 Identities=12% Similarity=0.232 Sum_probs=56.1
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHh--hcccccccccccc-------CCcchhhHHHHHHHHHHhh
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID--TSRCTICSAEIET-------GSLVPNLALRAAAVAIKQE 464 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~~-------~~~~pn~~lr~~~~~~~~~ 464 (547)
.+.+-+.=||=..++.|+++++|||+|-..=|+++++ ...|+.|.+.+.. ..+.+|..|+..++.+-.+
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 3445566688888899999999999999999999774 4689999999874 6677899999888776655
No 38
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00041 Score=54.20 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=45.2
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHh--hccccccccccccCCcc
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID--TSRCTICSAEIETGSLV 449 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~~~~~~ 449 (547)
.+.+-+.=||-...+.|+++++|||+|=..=|+++++ ...|++|.+.+..+.|+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~if 66 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTCC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhcC
Confidence 3445566778888899999999999999999999883 46899999999987764
No 39
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.94 E-value=0.00027 Score=54.29 Aligned_cols=39 Identities=26% Similarity=0.603 Sum_probs=34.9
Q ss_pred hhhccCcccchhHHHHHH-hhccccccccccccCCcchhh
Q 009001 414 MVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~ 452 (547)
++++|||.|-..=|++++ ....|++|.+++....+.|+|
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp EEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred EeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 678999999999999977 567999999999999988876
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.87 E-value=0.00036 Score=54.38 Aligned_cols=49 Identities=18% Similarity=0.404 Sum_probs=38.5
Q ss_pred cCccc-ccchh----hhhccCcccchhHHHHHHh--hccccccccccccCCcchhh
Q 009001 404 PLSGA-FLDDA----MVVSCGHSFGGLMLRKVID--TSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 404 p~~~~-~~~d~----~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~~~~~~pn~ 452 (547)
|+-.+ ++.+. ++++|||+|-..=|++++. ...|++|.++++.+++.|++
T Consensus 7 ~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 7 PRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp STTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred CcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 33334 45555 5679999999999999853 36799999999999998875
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.00043 Score=56.68 Aligned_cols=60 Identities=28% Similarity=0.546 Sum_probs=47.6
Q ss_pred ccchhhhcCcCcccccch----hhhhccCcccchhHHHHHHhh----cccccccccccc---CCcchhhHH
Q 009001 395 PSLRSVLSDPLSGAFLDD----AMVVSCGHSFGGLMLRKVIDT----SRCTICSAEIET---GSLVPNLAL 454 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d----~~i~~cghsfg~~~~~~~~~~----~~c~~c~~~~~~---~~~~pn~~l 454 (547)
..++..+.=||-.+.+.| +++++|||+|-..=|+++++. ..|+.|.+.+.. ..|..|+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~~ 80 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLTV 80 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTTT
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHHH
Confidence 455566667777888888 899999999999999998876 699999999875 355556544
No 42
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.47 E-value=0.0011 Score=52.34 Aligned_cols=54 Identities=17% Similarity=0.482 Sum_probs=44.9
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHHh----hccccccccccccCCc
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID----TSRCTICSAEIETGSL 448 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~----~~~c~~c~~~~~~~~~ 448 (547)
+.+...+.=||-.+.+.|+++++|||+|=..=|+++++ ...|++|.+++..+.+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34555667788888899999999999999999999985 4589999999986654
No 43
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.02 E-value=0.0016 Score=59.23 Aligned_cols=66 Identities=20% Similarity=0.370 Sum_probs=53.1
Q ss_pred ccchhhhcCcCcccccchhhhhccCcccchhHHHHHHhh--ccccccccccc---------cCCcchhhHHHHHHHH
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT--SRCTICSAEIE---------TGSLVPNLALRAAAVA 460 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~--~~c~~c~~~~~---------~~~~~pn~~lr~~~~~ 460 (547)
+.|.+-+.=||-..++.|++.++|||+|=..=|+++++. ..|+.|.+++. .+.++|+.+++..+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 456677778899999999999999999999999998864 38999999753 4467788777666553
No 44
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.74 E-value=0.0041 Score=49.86 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=37.3
Q ss_pred CcCcccccch---hhhhccCcccchhHHHHHH-hhccccccccccccCCcchh
Q 009001 403 DPLSGAFLDD---AMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPN 451 (547)
Q Consensus 403 dp~~~~~~~d---~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn 451 (547)
=||-.+.+++ .++++|||.|-..=|++++ ....|++|.+.+....+.+|
T Consensus 18 C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3444444433 3556999999999999977 45799999999998888765
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.66 E-value=0.0034 Score=54.72 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=41.0
Q ss_pred CcCcccccchh-------hhhccCcccchhHHHHHH-hhccccccccccccCCcchhh
Q 009001 403 DPLSGAFLDDA-------MVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 403 dp~~~~~~~d~-------~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~ 452 (547)
=||=.+.+.|. ++++|||+|-..=|++++ +...|++|.+.++...+.+++
T Consensus 10 C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp CTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECB
T ss_pred CcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccc
Confidence 34445566666 888999999999999977 567899999999988887764
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.42 E-value=0.0074 Score=46.38 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=36.6
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHhh----cccccc
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT----SRCTIC 439 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~----~~c~~c 439 (547)
.++.-+.=||=.+.+.|+++++|||+|=..=|+++++. ..|++|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45555667777888999999999999999999998863 479988
No 47
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.36 E-value=0.0083 Score=46.45 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=36.4
Q ss_pred hhhhcCcCcccccchh-------hhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 398 RSVLSDPLSGAFLDDA-------MVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 398 r~il~dp~~~~~~~d~-------~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
...+.=||=.+.+.+. ++++|||.|-..=|++++ ....|++|.+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3334445556666666 788999999999999977 5678999999876
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.32 E-value=0.0049 Score=53.70 Aligned_cols=39 Identities=26% Similarity=0.603 Sum_probs=35.6
Q ss_pred hhhccCcccchhHHHHHH-hhccccccccccccCCcchhh
Q 009001 414 MVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSLVPNL 452 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~~pn~ 452 (547)
++++|||.|-..=|++++ ..+.|+.|..++..+.++|+|
T Consensus 93 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 93 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp EEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred EeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 778999999999999966 678999999999999999886
No 49
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.30 E-value=0.0087 Score=44.86 Aligned_cols=44 Identities=20% Similarity=0.551 Sum_probs=35.6
Q ss_pred cchhhhcCcCcccccchhhhhccCcccchhHHHHHHh----hcccccc
Q 009001 396 SLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVID----TSRCTIC 439 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~~----~~~c~~c 439 (547)
.++..+.=||=.+.+.|+++++|||+|-..=|+++++ ...|++|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4445566677788889999999999999999999854 3788887
No 50
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.30 E-value=0.0024 Score=50.52 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=37.6
Q ss_pred cCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCC
Q 009001 402 SDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGS 447 (547)
Q Consensus 402 ~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~ 447 (547)
.=||=.+.+.|+++++|||.|=..=|++++ ....|++|.+.+....
T Consensus 17 ~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp BCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 345566778889999999999999999965 5679999999988443
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.14 E-value=0.0031 Score=49.52 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=38.9
Q ss_pred chhhhcCcCcccccchhhhhccCcccchhHHHHHH-hhccccccccccccCCc
Q 009001 397 LRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETGSL 448 (547)
Q Consensus 397 lr~il~dp~~~~~~~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~~~ 448 (547)
+..-+.=||=.+.+.+ ++++|||+|-..=|++++ ....|++|.+++.....
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 3334444555666677 889999999999999976 57899999999885543
No 52
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=94.76 E-value=0.013 Score=45.56 Aligned_cols=36 Identities=22% Similarity=0.559 Sum_probs=29.9
Q ss_pred ccch-hhhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 409 FLDD-AMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 409 ~~~d-~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
.+.| .++++|||+|-..=|++++ ....|+.|.+.+.
T Consensus 14 ~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 14 DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred cccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3445 4788999999999999976 4688999999976
No 53
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.64 E-value=0.015 Score=43.12 Aligned_cols=32 Identities=28% Similarity=0.656 Sum_probs=27.7
Q ss_pred hhhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 413 AMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
.++++|||.|-..=|++++ +...|++|.+++.
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred eEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 6778999999999999977 5579999998875
No 54
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.06 E-value=0.02 Score=44.58 Aligned_cols=35 Identities=26% Similarity=0.646 Sum_probs=29.7
Q ss_pred chhhhhccCcccchhHHHHHH-hhcccccccccccc
Q 009001 411 DDAMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIET 445 (547)
Q Consensus 411 ~d~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~ 445 (547)
++.++++|||.|-..=|++++ ....|++|.+.+..
T Consensus 28 ~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 28 EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 456778999999999999976 56889999999874
No 55
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.93 E-value=0.024 Score=45.02 Aligned_cols=34 Identities=26% Similarity=0.574 Sum_probs=28.9
Q ss_pred hhhhccCcccchhHHHHHH-hhccccccccccccC
Q 009001 413 AMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIETG 446 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~ 446 (547)
.++++|||.|-..=|++++ ....|++|.+++...
T Consensus 39 ~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 39 LRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp EEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred EEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3678999999999999977 567899999998754
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.61 E-value=0.012 Score=44.54 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=33.2
Q ss_pred CcCcccccchhhhhccCcccchhHHHHHHhhccccccccccccC
Q 009001 403 DPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETG 446 (547)
Q Consensus 403 dp~~~~~~~d~~i~~cghsfg~~~~~~~~~~~~c~~c~~~~~~~ 446 (547)
=||=...+.|+++++|||+|=..=|++ ....|+.|.+.+...
T Consensus 9 C~IC~~~~~~p~~l~CgH~fC~~Ci~~--~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA--SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSSCSSCBCCSCSTTSCCSBTTTCSS--SSSSCSSCCSSSSCC
T ss_pred ceEeCCccCCeEEcCCCCcccHHHHcc--CCCCCCcCCcEeecC
Confidence 455566778899999999998877766 467899999998743
No 57
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=93.59 E-value=0.027 Score=46.85 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=28.3
Q ss_pred hhhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 413 AMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
.++++|||.|-..=|++|+ ....|++|.+++.
T Consensus 56 ~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 56 ATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp EEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred EEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 6778999999999999977 5688999999876
No 58
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=93.30 E-value=0.027 Score=41.80 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=27.0
Q ss_pred hhhhc-cCcccchhHHHHHH-hhccccccccccc
Q 009001 413 AMVVS-CGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 413 ~~i~~-cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
.++++ |||.|-..=|++++ +...|++|.+++.
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred eEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 56666 99999999999976 5688999998864
No 59
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=92.67 E-value=0.085 Score=43.00 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=35.5
Q ss_pred cCcCccccc--chhhhhc--cCcccchhHHHHHHh--hccccccccccccCCc
Q 009001 402 SDPLSGAFL--DDAMVVS--CGHSFGGLMLRKVID--TSRCTICSAEIETGSL 448 (547)
Q Consensus 402 ~dp~~~~~~--~d~~i~~--cghsfg~~~~~~~~~--~~~c~~c~~~~~~~~~ 448 (547)
.=||=-+.+ +|..+++ |||+|=..=|.++.+ ...|+.|.++++...+
T Consensus 13 ~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 13 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp BCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 334444444 5777776 999999999999873 4789999999986655
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.58 E-value=0.051 Score=43.43 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=35.3
Q ss_pred hhhhcCcCcccccchhhhhccCcc-cchhHHHHHHhhcccccccccccc
Q 009001 398 RSVLSDPLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIET 445 (547)
Q Consensus 398 r~il~dp~~~~~~~d~~i~~cghs-fg~~~~~~~~~~~~c~~c~~~~~~ 445 (547)
+..+.=||=...+.|+++++|||. |=..=+++ ...|++|.++++.
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---CCCCccCCceecC
Confidence 444555666677888999999999 98877754 4899999999874
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=92.39 E-value=0.03 Score=44.81 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.1
Q ss_pred chhhhcCcCcccccchhhhhccCcc-cchhHHHHHHhhccccccccccc
Q 009001 397 LRSVLSDPLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIE 444 (547)
Q Consensus 397 lr~il~dp~~~~~~~d~~i~~cghs-fg~~~~~~~~~~~~c~~c~~~~~ 444 (547)
|+..+.=|+=.+.+.|+++++|||. |=..=++++ ..|++|.++++
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~ 66 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---DKCPMCYTVIT 66 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---SBCTTTCCBCS
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---ccCCCcCcCcc
Confidence 3344445666677889999999999 988887776 89999999987
No 62
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=91.44 E-value=4.7 Score=39.51 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccccCCCCcCcccc-cCCc--c-c-c--cCCCC--h
Q 009001 104 YLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMY-RAGR--A-L-E--DWDSS--P 174 (547)
Q Consensus 104 ~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP~Ee~~~~~rGYy~~-~~G~--~-~-n--~WP~~--P 174 (547)
..-..+.+.+++.+.|++++.|- ++.++++.+.+.++.+-.... ...+.... ..+. . . + .|-+. +
T Consensus 12 ~~~~~~~i~~~L~~~g~~Vid~f-Ls~ee~~~L~~~~~~~~~~g~-----~~~a~i~~~~~~~~~~iR~d~i~wl~~~~~ 85 (247)
T 2hbt_A 12 LKLALEYIVPCMNKHGICVVDDF-LGKETGQQIGDEVRALHDTGK-----FTDGQLVSQKSDSSKDIRGDKITWIEGKEP 85 (247)
T ss_dssp HHHHHHTHHHHHHHTSEEEESSS-SCHHHHHHHHHHHHHHHHTTC-----SCSCCEEECCSSSTTCEECCEEEEECSCST
T ss_pred hhhhHHHHHHHhccCCEEEECCC-CCHHHHHHHHHHHHhhhhcCC-----ccccccccccccccccccccceeeeccccc
Confidence 34445778899999999998876 899999999998887431110 00010000 0000 0 0 0 13321 2
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCCCCCCC
Q 009001 175 --PCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMN 252 (547)
Q Consensus 175 --~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag~~g~g 252 (547)
+.+..|++.+.++-.. +...||+.. ... ..-+.+.+|++. + . ...
T Consensus 86 ~~~~~~~l~~~i~~l~~~----ln~~lGl~~------i~~--------~~e~~~~~Y~~~----G--~---------~y~ 132 (247)
T 2hbt_A 86 GCETIGLLMSSMDDLIRH----CNGKLGSYK------ING--------RTKAMVACYPGN----G--T---------GYV 132 (247)
T ss_dssp TCHHHHHHHHHHHHHHHH----TTTTSTTCC------EEE--------ECCEEEEEECSS----S--C---------CEE
T ss_pred chhHHHHHHHHHHHHHHH----HhhhcCccc------ccc--------cceEEEEEecCC----C--C---------ccc
Confidence 4455566665544332 222233210 000 024678889861 1 1 135
Q ss_pred CCcccc-----cEEEEee--C-------CCCeeEEcCCC-CeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecC
Q 009001 253 GEVEKG-----LLTLISS--D-------SPGLQVCDPNG-RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPD 317 (547)
Q Consensus 253 ~HTD~G-----lLTLL~q--D-------~~GLQV~~~~G-~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p 317 (547)
.|.|.. .+|+++. + +|-|.+.+.++ ....|.|. .|.+|++-.+. -.+|.|.+
T Consensus 133 ~H~D~~~~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~~~~~~v~P~--~grlv~F~s~~----------~~~H~V~p- 199 (247)
T 2hbt_A 133 RHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPK--FDRLLFFWSDR----------RNPHEVQP- 199 (247)
T ss_dssp EECSSCSCCSEEEEEEEECBTTCCHHHHBCCEEECCTTCSSCEEECCB--TTEEEEEECST----------TCCEEECC-
T ss_pred ccccCCCCCCceEEEEEEeCCCCCCCCCceeEEEecCCCCceEEEEcC--CCEEEEEecCC----------Cceeeecc-
Confidence 666662 5677664 2 24477886543 57899999 99999887531 15899974
Q ss_pred CCCCCCCCCeeeEEEeecC
Q 009001 318 FVSCSNGGGRTSLAFRLMP 336 (547)
Q Consensus 318 ~~~~~~~~~R~SiafFl~P 336 (547)
....||||+..++-
T Consensus 200 -----~~~~R~sit~W~~~ 213 (247)
T 2hbt_A 200 -----AYATRYAITVWYFD 213 (247)
T ss_dssp -----BSSCEEEEEEEEEE
T ss_pred -----CCCEEEEEEEEEcC
Confidence 34689999876653
No 63
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=91.00 E-value=0.11 Score=44.45 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=26.4
Q ss_pred hhccCcccchhHHHHHHh------hccccccccccc
Q 009001 415 VVSCGHSFGGLMLRKVID------TSRCTICSAEIE 444 (547)
Q Consensus 415 i~~cghsfg~~~~~~~~~------~~~c~~c~~~~~ 444 (547)
+++|||.|-..=|.+|++ ...|++|...+.
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 679999999999999984 468999998875
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=90.43 E-value=0.088 Score=55.52 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=37.2
Q ss_pred CcCcccccchhhhhccCcccchhHHHHHHh--hccccccccccccCCc
Q 009001 403 DPLSGAFLDDAMVVSCGHSFGGLMLRKVID--TSRCTICSAEIETGSL 448 (547)
Q Consensus 403 dp~~~~~~~d~~i~~cghsfg~~~~~~~~~--~~~c~~c~~~~~~~~~ 448 (547)
=|+=.+.+.|+++++|||.|=..=|+++++ ...||.|.+++....+
T Consensus 335 C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp CTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 344456678899999999999999999886 6899999999875443
No 65
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.09 E-value=0.089 Score=42.77 Aligned_cols=34 Identities=24% Similarity=0.572 Sum_probs=27.5
Q ss_pred hhhh-ccCcccchhHHHHHH-hhccccccccccccC
Q 009001 413 AMVV-SCGHSFGGLMLRKVI-DTSRCTICSAEIETG 446 (547)
Q Consensus 413 ~~i~-~cghsfg~~~~~~~~-~~~~c~~c~~~~~~~ 446 (547)
.+++ +|||.|-..=|++++ ...+||+|.+++...
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred EEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 4445 499999999999987 557899999987643
No 66
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.73 E-value=0.17 Score=39.73 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=27.4
Q ss_pred hhhhccCcccchhHHHHHH-hhcccccccccccc
Q 009001 413 AMVVSCGHSFGGLMLRKVI-DTSRCTICSAEIET 445 (547)
Q Consensus 413 ~~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~~ 445 (547)
.++++|||.|-..=|++++ ....|++|.+++..
T Consensus 31 ~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 31 LGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp EEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred EEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3455999999999999977 45789999999763
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=89.19 E-value=0.12 Score=40.05 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=27.9
Q ss_pred cchhhhh--ccCcc-cchhHHHHHHh-hccccccccccc
Q 009001 410 LDDAMVV--SCGHS-FGGLMLRKVID-TSRCTICSAEIE 444 (547)
Q Consensus 410 ~~d~~i~--~cghs-fg~~~~~~~~~-~~~c~~c~~~~~ 444 (547)
..|++++ +|||. |=..=++++.+ .+.|++|.++|+
T Consensus 17 ~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 17 PRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp BSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4566666 99998 88888888764 468999999986
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=87.29 E-value=0.14 Score=41.61 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=33.2
Q ss_pred hhhhcCcCcccccchhhhhccCcc-cchhHHHHHHhhcccccccccccc
Q 009001 398 RSVLSDPLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIET 445 (547)
Q Consensus 398 r~il~dp~~~~~~~d~~i~~cghs-fg~~~~~~~~~~~~c~~c~~~~~~ 445 (547)
+.-..=++=.+...|+++++|||. |=..=++++ ..|++|.++++.
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---CcCCCCCchhhC
Confidence 333444555666788999999999 766666554 599999999874
No 69
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=86.41 E-value=0.21 Score=38.77 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=28.1
Q ss_pred ccchhhhh--ccCcc-cchhHHHHHH-hhccccccccccc
Q 009001 409 FLDDAMVV--SCGHS-FGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 409 ~~~d~~i~--~cghs-fg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
-..|++++ +|||. |=..=+++++ +...|++|.++|+
T Consensus 17 ~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 17 RPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp SCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34567776 99999 6677777866 4578999999986
No 70
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.96 E-value=0.3 Score=38.54 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=28.3
Q ss_pred ccccchhhhhccCcc-cchhHHHHHHhhcccccccccccc
Q 009001 407 GAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIET 445 (547)
Q Consensus 407 ~~~~~d~~i~~cghs-fg~~~~~~~~~~~~c~~c~~~~~~ 445 (547)
.+-..|.++++|||. |=..=++ +...|++|.+.|+.
T Consensus 22 ~~~~~~~v~~pCgH~~~C~~C~~---~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 22 QNGTVNWVLLPCRHTCLCDGCVK---YFQQCPMCRQFVQE 58 (68)
T ss_dssp SSSCCCCEETTTTBCCSCTTHHH---HCSSCTTTCCCCCC
T ss_pred CcCCCCEEEECCCChhhhHHHHh---cCCCCCCCCcchhc
Confidence 344578899999999 7766665 46899999999873
No 71
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=85.57 E-value=0.29 Score=42.24 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.5
Q ss_pred hhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 414 MVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
++++|||.|-..=|.+++ ...+|++|.++..
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred eecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999999999977 5678999999854
No 72
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=81.56 E-value=4.5 Score=38.76 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=33.0
Q ss_pred CeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecCCC
Q 009001 278 RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQG 338 (547)
Q Consensus 278 ~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P~~ 338 (547)
.+..|.|. +|.+||+...+ .|.|.+ +....+|+||+|-+.+..
T Consensus 167 ~~~~i~P~--~G~lvlFpS~l------------~H~V~p----~~~~~~RiSIsFN~~~~~ 209 (216)
T 2rg4_A 167 TFRSVAPK--VGDVLLWESWL------------RHEVPM----NMAEEDRISVSFNYAWGE 209 (216)
T ss_dssp SEEEECCC--TTEEEEEETTS------------CEEECC----CCSSSCEEEEEEEEEC--
T ss_pred CeeEecCC--CCeEEEECCCC------------EEeccC----CCCCCCEEEEEEEeecCC
Confidence 56788999 99999997763 799985 223468999999998865
No 73
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.45 E-value=0.52 Score=38.54 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=30.5
Q ss_pred chhhhhccC-----cccchhHHHHHHhhc---cccccccccccC
Q 009001 411 DDAMVVSCG-----HSFGGLMLRKVIDTS---RCTICSAEIETG 446 (547)
Q Consensus 411 ~d~~i~~cg-----hsfg~~~~~~~~~~~---~c~~c~~~~~~~ 446 (547)
++.+|++|. |-|=..=|++|++.+ +|++|...+...
T Consensus 28 ~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 28 ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 466788995 999999999999775 899999997643
No 74
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=79.97 E-value=3.1 Score=40.95 Aligned_cols=49 Identities=24% Similarity=0.269 Sum_probs=34.9
Q ss_pred CCeeEEcCCCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecC
Q 009001 268 PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMP 336 (547)
Q Consensus 268 ~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P 336 (547)
|.|.+.+..| =..|+|. .|.++++.. .++|+|.+. ....|++++++++-
T Consensus 147 Getvf~~~~~-~~~V~P~--~G~~v~F~s------------~~lH~v~pV-----~~G~R~~~~~Wi~s 195 (243)
T 3dkq_A 147 GELVIQDTYG-QQSIKLS--AGSLVLYPS------------SSLHQVTPV-----LSGERTAAFMWLQS 195 (243)
T ss_dssp CCEEEEETTE-EEEECCC--TTCEEEEET------------TSEEEECCE-----EEECEEEEEEEEEE
T ss_pred ceEEEeeCCC-cEEEecC--CCEEEEECC------------CCeEcCccc-----cccCEEEEEEehhh
Confidence 5577775443 3678998 999999753 369999741 23589999988763
No 75
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=79.00 E-value=9.2 Score=36.71 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=68.5
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCcccceeeeeeecCCCCCCCCCcccccCCC
Q 009001 168 EDWDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGG 247 (547)
Q Consensus 168 n~WP~~P~~m~~y~~~m~~la~~LL~~IA~~LGL~~~~f~~~~~~~p~~~~~~~s~lRll~YPp~~~~~~~~~~~~~gag 247 (547)
..||..|+.+.++.+++... .|++ . +. + ....+++|.+..
T Consensus 77 ~pw~~~P~~L~~l~~~~~~~-----------~g~~-----~-~~--p-------n~~LvN~Y~~G~-------------- 116 (211)
T 3i3q_A 77 KPWPAMPQSFHNLCQRAATA-----------AGYP-----D-FQ--P-------DACLINRYAPGA-------------- 116 (211)
T ss_dssp SBCCCCCHHHHHHHHHHHHH-----------TTCT-----T-CC--C-------CEEEEEEECTTC--------------
T ss_pred CCCCchHHHHHHHHHHHHHh-----------cCCC-----C-cC--C-------CEEEEEEEcCCC--------------
Confidence 35998887777766654421 2221 1 11 1 267889998732
Q ss_pred CCCCCCCccc-------ccEEEEeeCCCCeeEEcC--CCCeEEeccCCCCCcEEEEcchhhhhhhCCCCCCccceeecCC
Q 009001 248 KPAMNGEVEK-------GLLTLISSDSPGLQVCDP--NGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDF 318 (547)
Q Consensus 248 ~~g~g~HTD~-------GlLTLL~qD~~GLQV~~~--~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~ 318 (547)
+++.|.|. .+++|-+....=+.+... .+.++.+.-. +|+++|.-|++- .| .|.|..-.
T Consensus 117 --~i~~H~D~~e~~~~~pI~svSLG~~~~f~f~~~~~~~~~~~i~L~--~GsllvM~G~~r-~~--------~H~I~~~~ 183 (211)
T 3i3q_A 117 --KLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE--HGDVVVWGGESR-LF--------YHGIQPLK 183 (211)
T ss_dssp --CEEEECCCCCSCTTSCEEEEEEESCEEEEECCSSTTSCCEEEEEC--TTCEEEECGGGT-TC--------CEEECCCC
T ss_pred --CcccccCCCccccCCCEEEEECCCCeEEEEecccCCCceEEEECC--CCCEEEECchHH-ce--------EeccCccc
Confidence 25677772 244555554444555532 3568888888 999999999873 34 57775311
Q ss_pred CC--CCCCCCeeeEEEeec
Q 009001 319 VS--CSNGGGRTSLAFRLM 335 (547)
Q Consensus 319 ~~--~~~~~~R~SiafFl~ 335 (547)
.. ...+..|+|+.|...
T Consensus 184 ~~~~p~~~~~RIsLTFR~~ 202 (211)
T 3i3q_A 184 AGFHPLTIDCRYNLTFRQA 202 (211)
T ss_dssp CCCBTTTBTCEEEEEEECC
T ss_pred CCcCCCCCCCEEEEEeeec
Confidence 00 001246999999753
No 76
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=77.43 E-value=0.46 Score=49.21 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=34.4
Q ss_pred hcCcCcccccchhhhhccCcc-cchhHHHHHHhhcccccccccccc
Q 009001 401 LSDPLSGAFLDDAMVVSCGHS-FGGLMLRKVIDTSRCTICSAEIET 445 (547)
Q Consensus 401 l~dp~~~~~~~d~~i~~cghs-fg~~~~~~~~~~~~c~~c~~~~~~ 445 (547)
+.=|+=...+.|+++++|||+ |=..=+.++ ..|++|.++++.
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGC---SBCTTTCCBCCE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcC---CcCCCCCCCccC
Confidence 444666777889999999999 888777765 899999999873
No 77
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=76.32 E-value=0.53 Score=41.45 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=0.0
Q ss_pred hhhccCcccchhHHHHHH-hhccccccccccc
Q 009001 414 MVVSCGHSFGGLMLRKVI-DTSRCTICSAEIE 444 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~-~~~~c~~c~~~~~ 444 (547)
++++|||.|-..=|.+++ ...+||+|.++..
T Consensus 80 ~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 80 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp --------------------------------
T ss_pred ccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 345899999999999976 5678999998854
No 78
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=69.31 E-value=12 Score=36.24 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=55.0
Q ss_pred eeeeeeecCCCCCCCCCcccccCCCCCCCCCCccc--------ccEEEEeeCCCCeeEEcCC----------CCeEEecc
Q 009001 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK--------GLLTLISSDSPGLQVCDPN----------GRWYLADG 284 (547)
Q Consensus 223 ~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~--------GlLTLL~qD~~GLQV~~~~----------G~Wv~Vpp 284 (547)
.+.+++|.+... +++.|.|- .+.+|-+....=+.+.... +..+.+.-
T Consensus 127 ~~LvN~Y~~G~d---------------~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~~~~~~~~~~~~~~~~i~L 191 (238)
T 2iuw_A 127 SLLCNLYRNEKD---------------SVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPL 191 (238)
T ss_dssp EEEEEEECSTTC---------------CEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC--------CCCEEEEEE
T ss_pred EEEEEEECCCCC---------------ceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccCCccccCcccCCceEEEEc
Confidence 578899987421 25677774 2344444333334443322 36888888
Q ss_pred CCCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEeecC
Q 009001 285 GSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMP 336 (547)
Q Consensus 285 ~~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl~P 336 (547)
. +|+++|+-|++=..| .|.|..- ......|+|+.|....
T Consensus 192 ~--~gsllvM~G~~r~~w--------~H~I~~~---~~~~~~RIsLTfR~v~ 230 (238)
T 2iuw_A 192 D--HGTLLIMEGATQADW--------QHRVPKE---YHSREPRVNLTFRTVY 230 (238)
T ss_dssp C--TTCEEEEEETHHHHE--------EEEECCC---SSCCCCEEEEEEECCC
T ss_pred C--CCCEEEEChhhhCcc--------EecCCCc---CCCCCCEEEEEeeecc
Confidence 8 999999999998888 4555420 0124589999998643
No 79
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.28 E-value=1.9 Score=35.47 Aligned_cols=28 Identities=21% Similarity=0.592 Sum_probs=22.7
Q ss_pred ccCcccchhHHHHHHhh---------ccccc--cccc--cc
Q 009001 417 SCGHSFGGLMLRKVIDT---------SRCTI--CSAE--IE 444 (547)
Q Consensus 417 ~cghsfg~~~~~~~~~~---------~~c~~--c~~~--~~ 444 (547)
+|||+|=..=|++.++. ..|+. |.+. ++
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~ 65 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEEC
T ss_pred CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccC
Confidence 69999999988886543 47998 9988 55
No 80
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=63.03 E-value=17 Score=34.40 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=53.5
Q ss_pred eeeeeeecCCCCCCCCCcccccCCCCCCCCCCccc--------ccEEEEeeCCCCeeEEcC---------CCCeEEeccC
Q 009001 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEK--------GLLTLISSDSPGLQVCDP---------NGRWYLADGG 285 (547)
Q Consensus 223 ~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~--------GlLTLL~qD~~GLQV~~~---------~G~Wv~Vpp~ 285 (547)
.+.+++|.+... +++.|.|- .+++|-+....=+.+... .+..+.+.-.
T Consensus 101 ~~LvN~Y~~G~d---------------~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~~~~~~~~~~~~~~~L~ 165 (204)
T 3s57_A 101 FVLINRYKDGSD---------------HICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVRLPLA 165 (204)
T ss_dssp EEEEEEESSTTC---------------CEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGCSSSCSCCCCCEEEEEC
T ss_pred eeEEEEECCCCC---------------cccceecChhhccCCCcEEEEECCCceEEEEEEcCCCccccccCCceEEEECC
Confidence 577999988431 25667665 233444443333444422 2256778877
Q ss_pred CCCCcEEEEcchhhhhhhCCCCCCccceeecCCCCCCCCCCeeeEEEee
Q 009001 286 SAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRL 334 (547)
Q Consensus 286 ~~pg~lvVNiGD~Le~~TnG~lkSt~HRVv~p~~~~~~~~~R~SiafFl 334 (547)
+|+++|+-|++=..| .|.|..- ......|+|+.|..
T Consensus 166 --~GsllvM~g~~q~~w--------~H~Ip~~---~~~~~~RislTFR~ 201 (204)
T 3s57_A 166 --HGSLLMMNHPTNTHW--------YHSLPVR---KKVLAPRVNLTFRK 201 (204)
T ss_dssp --TTEEEEEETTHHHHE--------EEEECCC---TTCCSCEEEEEEEC
T ss_pred --CCCEEEECchhhhee--------Eeecccc---CCCCCCEEEEEeee
Confidence 999999999988888 6776531 11236899999964
No 81
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.03 E-value=3.6 Score=33.18 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=25.3
Q ss_pred ccCcccchhHHHHHHhhc---cccccccccc
Q 009001 417 SCGHSFGGLMLRKVIDTS---RCTICSAEIE 444 (547)
Q Consensus 417 ~cghsfg~~~~~~~~~~~---~c~~c~~~~~ 444 (547)
.|||.|-..=|.+++++. +|+.|+++..
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 899999999999999775 8999999865
No 82
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=62.02 E-value=2.6 Score=43.83 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=26.6
Q ss_pred hccCcccchhHHHHHHhh------------cccccccccccc
Q 009001 416 VSCGHSFGGLMLRKVIDT------------SRCTICSAEIET 445 (547)
Q Consensus 416 ~~cghsfg~~~~~~~~~~------------~~c~~c~~~~~~ 445 (547)
.+|||.|-+.-|.+|+++ ..|+-|.++|+.
T Consensus 332 ~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 379999999999999986 479999999873
No 83
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=60.75 E-value=4.6 Score=42.19 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=54.5
Q ss_pred cchhhhcCcCcccccchhhhh-ccCcc--cchhHHHHHHh---hccccccccccccCCcchhhHHHHHHHHH
Q 009001 396 SLRSVLSDPLSGAFLDDAMVV-SCGHS--FGGLMLRKVID---TSRCTICSAEIETGSLVPNLALRAAAVAI 461 (547)
Q Consensus 396 slr~il~dp~~~~~~~d~~i~-~cghs--fg~~~~~~~~~---~~~c~~c~~~~~~~~~~pn~~lr~~~~~~ 461 (547)
+++==|.+|||...|..++=. .|-|. |..+.+-.+.+ .-.|++|++.+...+|...-.|..+.+..
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 455558899999999888877 59998 99988877654 47899999999999999988888777655
No 84
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=60.31 E-value=17 Score=37.52 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=65.2
Q ss_pred eeeeeeecCCCCCCCCCcccccCCCCCCCCCCcccc------cEEEEeeCCCCeeEEcCCCCeEEeccCCCCCcEEEEcc
Q 009001 223 SVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKG------LLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITG 296 (547)
Q Consensus 223 ~lRll~YPp~~~~~~~~~~~~~gag~~g~g~HTD~G------lLTLL~qD~~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiG 296 (547)
.+.++.|.+.. +++.|.|.. +++|-+....=+.+...+|.++.+.-. +|+++|+-|
T Consensus 199 ~~lvN~Y~~G~----------------~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~~~~~~l~L~--~gsLlvM~G 260 (345)
T 3tht_A 199 QMTINQYEPGQ----------------GIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLP--RRSLLVMTG 260 (345)
T ss_dssp EEEEEEECTTC----------------CEEEECCCTTTBCSCEEEEEESSCEEEEEECTTSCEEEEEEC--TTEEEEECT
T ss_pred EEEEEEecCCC----------------CEeeccCCchhcCCeEEEEECCCceeEEEccCCCceEEEEcC--CCcEEEECh
Confidence 67889897721 256777763 445544445557777667789999888 999999999
Q ss_pred hhhhhhhCCCCCCccceeecCC--------C-CC----CCCCCeeeEEEeecCCC
Q 009001 297 KALSHATAGLRPAALYRAAPDF--------V-SC----SNGGGRTSLAFRLMPQG 338 (547)
Q Consensus 297 D~Le~~TnG~lkSt~HRVv~p~--------~-~~----~~~~~R~SiafFl~P~~ 338 (547)
++-..|..|.-+-...-+-... . .+ .....|+|+.|..-++.
T Consensus 261 ~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~ 315 (345)
T 3tht_A 261 ESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQT 315 (345)
T ss_dssp HHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSS
T ss_pred HHhhceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCC
Confidence 9999998776554433321100 0 00 01346999999987765
No 85
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.37 E-value=11 Score=39.25 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=57.0
Q ss_pred ccchhhhcCcCcccccchhhhh-ccCcc--cchhHHHHHHh---hccccccccccccCCcchhhHHHHHHHHHHhhhhhh
Q 009001 395 PSLRSVLSDPLSGAFLDDAMVV-SCGHS--FGGLMLRKVID---TSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRR 468 (547)
Q Consensus 395 ~slr~il~dp~~~~~~~d~~i~-~cghs--fg~~~~~~~~~---~~~c~~c~~~~~~~~~~pn~~lr~~~~~~~~~~~~~ 468 (547)
.+++==|.+|||...|..++=. .|-|- |.....-.+.+ +-.|++|++.+.-++|...-.+-.+.+....-|+..
T Consensus 210 ~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~~~v~~I~ 289 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDCSDVDEIK 289 (360)
T ss_dssp CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTTCSSCCEEE
T ss_pred eeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHhCCCCCEEE
Confidence 3455567899999998888766 59998 99998888665 478999999999889988887777766543333333
No 86
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=41.67 E-value=91 Score=29.71 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=38.4
Q ss_pred cEEEEee--CC--CCeeEEcCCCCeEEeccCCCCCcEEEEcchhhhhhhCCC-CCCccceeecCCCCCCCCCCeeeEEEe
Q 009001 259 LLTLISS--DS--PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGL-RPAALYRAAPDFVSCSNGGGRTSLAFR 333 (547)
Q Consensus 259 lLTLL~q--D~--~GLQV~~~~G~Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~-lkSt~HRVv~p~~~~~~~~~R~SiafF 333 (547)
++|+++. |. ||=-+....| +.|.|. .|.++++-.-. .+|. -..++|.|.+- ....|+++..+
T Consensus 143 ~~T~l~YLnd~~~GGeT~Fp~~~--~~V~P~--~G~al~f~~~~----~~g~~d~~~lH~~~PV-----~~G~K~v~~~W 209 (216)
T 3itq_A 143 ISTLVMYLNDVEEGGETFFPKLN--LSVHPR--KGMAVYFEYFY----QDQSLNELTLHGGAPV-----TKGEKWIATQW 209 (216)
T ss_dssp EEEEEEECSCCSEECCEEETTTT--EEECCC--TTCEEEEECCC----SSHHHHHTTCEEECCE-----EESCEEEEEEE
T ss_pred EEEEEEecccCCcCceeEecCCC--CEEecC--CCeEEEEeccC----CCCCCCCcccccccee-----ccccEEEEEee
Confidence 4676664 42 4543443223 788898 88888875311 1121 13579998741 23479998877
Q ss_pred ecC
Q 009001 334 LMP 336 (547)
Q Consensus 334 l~P 336 (547)
++-
T Consensus 210 ~~~ 212 (216)
T 3itq_A 210 VRR 212 (216)
T ss_dssp EES
T ss_pred Eec
Confidence 653
No 87
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=41.51 E-value=9.8 Score=32.64 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.0
Q ss_pred hhhccCcccchhHHHHHH--hhccccccccccc
Q 009001 414 MVVSCGHSFGGLMLRKVI--DTSRCTICSAEIE 444 (547)
Q Consensus 414 ~i~~cghsfg~~~~~~~~--~~~~c~~c~~~~~ 444 (547)
-+++|.|-|=-+=+..+. +.+.|+.|+.+|+
T Consensus 16 RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 16 RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred eeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 467999999988888864 5689999999976
No 88
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=34.17 E-value=1e+02 Score=28.89 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=32.2
Q ss_pred eEEeccCCCCCcEEEEcchhhhhhhCCCC-CCccceeecCCCCCCCCCCeeeEEEeecCC
Q 009001 279 WYLADGGSAPGDLLLITGKALSHATAGLR-PAALYRAAPDFVSCSNGGGRTSLAFRLMPQ 337 (547)
Q Consensus 279 Wv~Vpp~~~pg~lvVNiGD~Le~~TnG~l-kSt~HRVv~p~~~~~~~~~R~SiafFl~P~ 337 (547)
-+.|.|. .|.+||+-- ...+|.. ..++|.|.+- ....||++..+++-+
T Consensus 170 ~~~V~P~--~G~al~f~~----~~~~g~~d~~~lH~~~PV-----~~G~K~~~~~Wi~~~ 218 (224)
T 2jig_A 170 GLAVKPI--KGDALMFYS----LKPDGSNDPASLHGSCPT-----LKGDKWSATKWIHVA 218 (224)
T ss_dssp SEEECCC--TTCEEEEES----BCTTSCBCGGGCEEECCE-----EESEEEEEEEEEESS
T ss_pred ceEEecc--cCcEEEEEe----eCCCCCCCCCCcccCCcc-----ccceEEEEEEeEEcC
Confidence 4789999 888888753 1123332 5689998741 234799998887654
No 89
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.12 E-value=3.6 Score=30.58 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=22.1
Q ss_pred hhccCcccchhHHHHHHhhcccccccccc
Q 009001 415 VVSCGHSFGGLMLRKVIDTSRCTICSAEI 443 (547)
Q Consensus 415 i~~cghsfg~~~~~~~~~~~~c~~c~~~~ 443 (547)
-+.||+.|+.+.|+.+ -.-.|+.|+--|
T Consensus 6 C~rCg~~fs~~el~~l-P~IrCpyCGyri 33 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL-PGVRCPYCGYKI 33 (48)
T ss_dssp CCCTTTTCCCCCSCCC-SSSCCTTTCCSC
T ss_pred eeccCCCccHHHHhhC-CCcccCccCcEE
Confidence 3579999999988765 456899998664
No 90
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=23.04 E-value=34 Score=36.67 Aligned_cols=57 Identities=11% Similarity=-0.089 Sum_probs=43.5
Q ss_pred CCCCcceeeCCCCCCCCCchhHHHHHHHHHhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCc
Q 009001 84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTK 147 (547)
Q Consensus 84 ~~~~IPvIDLs~l~~~d~~~~~~~~~~L~~A~~~~GFF~L~nhGV~~~li~~a~~~ar~FF~LP 147 (547)
...-||.||++.+.++.- .+...+.+++.|+++|.|. |+.+......+...+|.+..
T Consensus 97 G~~~iP~i~f~di~~~~~------s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~~n 153 (461)
T 2dbn_A 97 GDAVWPVLSYADIKAGHV------TAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLDRN 153 (461)
T ss_dssp TCCSSCEEEHHHHHHTCC------CHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcceecHHHhcCCCC------CHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHHhC
Confidence 345699999998765431 2445678889999999987 99988888888888887543
No 91
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=21.53 E-value=29 Score=29.47 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=11.9
Q ss_pred ceeecceeEeecC
Q 009001 513 PFSVNEKVLIKED 525 (547)
Q Consensus 513 p~~v~~~v~i~gn 525 (547)
-|.+||.|-||||
T Consensus 33 ~yk~Gd~VdIk~~ 45 (96)
T 1vq8_Q 33 EFDDGEKVHLKID 45 (96)
T ss_dssp CCCTTCEEEECCC
T ss_pred HcCCCCEEEEEec
Confidence 4899999999998
No 92
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.00 E-value=11 Score=32.51 Aligned_cols=30 Identities=30% Similarity=0.621 Sum_probs=24.4
Q ss_pred ccchhhhhccCcccchhHHHHHHhhccccccccc
Q 009001 409 FLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAE 442 (547)
Q Consensus 409 ~~~d~~i~~cghsfg~~~~~~~~~~~~c~~c~~~ 442 (547)
+|.++.=..||+.| .+++.+-+.|+.|+-.
T Consensus 64 ~v~p~~C~~CG~~F----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 64 LIKPAQCRKCGFVF----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp EECCCBBTTTCCBC----CCCSSCCSSCSSSCCC
T ss_pred EEECcChhhCcCee----cccCCCCCCCcCCCCC
Confidence 37777888999999 4556778999999876
Done!