Query 009002
Match_columns 547
No_of_seqs 206 out of 1533
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 19:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00136 silicon transporter; 100.0 4.7E-64 1E-68 542.1 47.3 471 1-546 1-477 (482)
2 KOG2639 Sodium sulfate symport 100.0 4.4E-59 9.6E-64 481.1 29.6 483 3-546 169-675 (685)
3 COG1055 ArsB Na+/H+ antiporter 100.0 8.8E-57 1.9E-61 473.7 38.4 403 12-545 8-420 (424)
4 PRK15445 arsenical pump membra 100.0 2.2E-53 4.8E-58 456.6 44.2 405 11-544 2-418 (427)
5 cd01118 ArsB_permease Anion pe 100.0 1.6E-51 3.5E-56 440.9 43.3 401 12-545 2-414 (416)
6 PF02040 ArsB: Arsenical pump 100.0 9.4E-50 2E-54 421.3 39.6 404 12-544 2-417 (423)
7 PLN00137 NHAD transporter fami 100.0 1.6E-49 3.4E-54 423.2 39.3 385 9-540 5-412 (424)
8 TIGR00935 2a45 arsenical pump 100.0 7.4E-49 1.6E-53 421.9 42.5 405 10-545 2-420 (429)
9 TIGR00775 NhaD Na+/H+ antiport 100.0 3.5E-49 7.7E-54 420.4 38.3 357 13-512 7-384 (420)
10 cd01117 YbiR_permease Putative 100.0 1.8E-48 3.8E-53 413.1 42.6 375 29-544 7-382 (384)
11 PRK09547 nhaB sodium/proton an 100.0 7.5E-48 1.6E-52 409.0 37.5 370 47-545 76-495 (513)
12 cd01116 P_permease Permease P 100.0 1.4E-45 3.1E-50 394.5 43.4 399 17-544 2-410 (413)
13 TIGR00785 dass anion transport 100.0 1.9E-42 4.1E-47 373.9 40.5 404 7-545 8-439 (444)
14 cd00625 ArsB_NhaD_permease Ani 100.0 4.3E-40 9.4E-45 349.9 42.2 385 29-545 7-395 (396)
15 TIGR00774 NhaB Na+/H+ antiport 100.0 2.7E-40 5.8E-45 342.6 36.8 374 46-545 75-494 (515)
16 cd01115 SLC13_permease Permeas 100.0 1.8E-39 3.8E-44 343.8 40.6 366 14-545 2-377 (382)
17 COG0471 CitT Di- and tricarbox 100.0 1.4E-38 3.1E-43 343.8 37.0 381 35-545 51-451 (461)
18 PF00939 Na_sulph_symp: Sodium 100.0 1.7E-37 3.8E-42 337.4 37.0 409 4-545 27-460 (471)
19 PF03600 CitMHS: Citrate trans 100.0 5.7E-37 1.2E-41 321.2 36.9 305 33-482 18-342 (351)
20 TIGR00784 citMHS citrate trans 100.0 3.5E-27 7.5E-32 253.3 39.6 353 63-544 57-420 (431)
21 KOG1281 Na+/dicarboxylate, Na+ 99.9 2E-25 4.4E-30 237.6 30.6 424 7-543 42-566 (586)
22 cd01116 P_permease Permease P 99.9 1.2E-20 2.5E-25 202.2 21.4 184 11-196 219-409 (413)
23 PRK09412 anaerobic C4-dicarbox 99.9 1.3E-18 2.8E-23 186.5 33.9 156 39-198 28-186 (433)
24 TIGR00786 dctM TRAP transporte 99.8 1.5E-17 3.2E-22 177.9 38.6 345 57-545 31-394 (405)
25 cd01115 SLC13_permease Permeas 99.8 1.1E-19 2.4E-24 192.5 22.0 168 29-199 209-378 (382)
26 PLN00136 silicon transporter; 99.8 2.9E-20 6.3E-25 201.6 17.6 167 370-546 33-199 (482)
27 TIGR00785 dass anion transport 99.8 4E-19 8.7E-24 192.2 23.3 187 8-196 247-437 (444)
28 PRK15445 arsenical pump membra 99.8 1.8E-19 3.9E-24 193.9 20.1 187 10-199 224-420 (427)
29 TIGR00935 2a45 arsenical pump 99.8 1.4E-18 3.1E-23 187.1 22.6 186 10-200 225-422 (429)
30 COG0471 CitT Di- and tricarbox 99.8 2.4E-18 5.3E-23 186.4 22.3 190 9-200 262-453 (461)
31 cd01118 ArsB_permease Anion pe 99.8 4.2E-18 9E-23 182.7 19.9 168 369-545 19-191 (416)
32 PF00939 Na_sulph_symp: Sodium 99.8 8.4E-18 1.8E-22 183.2 21.6 196 9-207 268-468 (471)
33 TIGR00770 Dcu anaerobic c4-dic 99.8 1.2E-15 2.6E-20 163.1 32.2 140 60-199 41-183 (430)
34 PRK12489 anaerobic C4-dicarbox 99.7 3.4E-15 7.3E-20 158.7 33.4 161 28-196 19-189 (443)
35 PRK09547 nhaB sodium/proton an 99.7 1.1E-16 2.3E-21 171.4 20.6 164 33-201 318-498 (513)
36 COG1055 ArsB Na+/H+ antiporter 99.7 1.6E-16 3.4E-21 168.5 19.6 186 11-199 226-421 (424)
37 cd01117 YbiR_permease Putative 99.7 1E-16 2.3E-21 170.1 18.2 166 370-545 11-176 (384)
38 PF03600 CitMHS: Citrate trans 99.7 8.2E-16 1.8E-20 161.3 18.6 169 368-544 16-189 (351)
39 cd00625 ArsB_NhaD_permease Ani 99.7 6.7E-16 1.4E-20 164.3 15.4 166 370-545 9-175 (396)
40 KOG2639 Sodium sulfate symport 99.6 3.8E-15 8.2E-20 155.9 16.4 191 7-199 469-675 (685)
41 PRK10654 dcuC C4-dicarboxylate 99.6 3.5E-11 7.7E-16 129.5 41.0 346 64-543 78-444 (455)
42 PLN00137 NHAD transporter fami 99.6 6.2E-14 1.3E-18 150.2 17.6 154 36-197 251-416 (424)
43 KOG1281 Na+/dicarboxylate, Na+ 99.5 2.5E-14 5.3E-19 153.4 10.5 146 51-197 421-567 (586)
44 TIGR00775 NhaD Na+/H+ antiport 99.5 2.9E-13 6.3E-18 144.9 16.9 152 35-197 245-408 (420)
45 TIGR00771 DcuC c4-dicarboxylat 99.5 1.3E-10 2.9E-15 123.2 33.7 347 57-539 14-387 (388)
46 TIGR00774 NhaB Na+/H+ antiport 99.4 3.2E-12 6.9E-17 134.2 15.3 151 385-544 77-261 (515)
47 TIGR00784 citMHS citrate trans 99.4 1.1E-11 2.3E-16 133.6 19.6 180 9-197 231-420 (431)
48 PF02040 ArsB: Arsenical pump 99.4 1.5E-11 3.2E-16 131.1 18.3 169 368-545 18-191 (423)
49 PF03606 DcuC: C4-dicarboxylat 99.3 1.3E-08 2.8E-13 110.8 35.8 141 64-207 79-223 (465)
50 TIGR00786 dctM TRAP transporte 99.3 2.8E-10 6E-15 122.0 21.3 144 49-194 240-390 (405)
51 COG2851 CitM H+/citrate sympor 99.2 3.9E-08 8.4E-13 100.3 29.8 342 59-533 55-411 (433)
52 TIGR00529 AF0261 converved hyp 99.2 2.2E-07 4.7E-12 98.6 36.7 151 37-194 25-181 (387)
53 PRK12489 anaerobic C4-dicarbox 99.2 9.2E-10 2E-14 117.5 18.6 175 361-544 12-190 (443)
54 TIGR00791 gntP gluconate trans 99.1 7.7E-07 1.7E-11 96.5 39.7 157 33-191 22-185 (440)
55 PRK09412 anaerobic C4-dicarbox 99.1 2.4E-09 5.2E-14 115.3 19.1 165 370-545 22-186 (433)
56 PF06450 NhaB: Bacterial Na+/H 99.1 1.7E-08 3.7E-13 103.2 22.4 144 46-189 75-250 (515)
57 PF07158 MatC_N: Dicarboxylate 99.1 8.3E-09 1.8E-13 93.8 16.8 127 28-156 20-149 (149)
58 PRK10654 dcuC C4-dicarboxylate 99.0 2.3E-08 5.1E-13 107.8 21.5 193 7-201 242-449 (455)
59 PF02447 GntP_permease: GntP f 99.0 1.2E-06 2.5E-11 94.2 33.5 159 33-194 22-188 (441)
60 PRK15060 L-dehydroascorbate tr 99.0 1.1E-05 2.3E-10 86.5 40.2 134 398-542 274-407 (425)
61 PF04165 DUF401: Protein of un 99.0 3E-06 6.6E-11 89.5 35.1 351 30-544 19-380 (385)
62 PF06808 DctM: DctM-like trans 99.0 1.9E-06 4.1E-11 92.6 33.5 131 399-541 275-406 (416)
63 PRK09821 putative transporter; 99.0 3.7E-06 8E-11 90.5 35.3 157 33-194 26-192 (454)
64 PRK11588 hypothetical protein; 99.0 2.6E-06 5.7E-11 92.1 34.0 131 75-206 122-254 (506)
65 TIGR00931 antiport_nhaC Na+/H+ 98.9 1.6E-05 3.5E-10 86.2 36.1 150 51-202 49-205 (454)
66 COG3067 NhaB Na+/H+ antiporter 98.9 5E-07 1.1E-11 90.6 22.2 143 47-189 76-250 (516)
67 PRK09921 permease DsdX; Provis 98.8 3.5E-05 7.6E-10 83.3 36.7 158 33-194 27-192 (445)
68 PRK14984 high-affinity glucona 98.8 1.3E-05 2.9E-10 85.9 33.0 158 33-192 22-186 (438)
69 PRK10472 low affinity gluconat 98.8 2.4E-05 5.2E-10 84.2 34.9 155 36-193 29-191 (445)
70 PRK09804 putative cryptic C4-d 98.8 6.7E-05 1.5E-09 80.1 36.9 348 64-543 75-447 (455)
71 PF03605 DcuA_DcuB: Anaerobic 98.8 4.6E-06 9.9E-11 86.0 26.8 164 27-197 14-182 (364)
72 COG1593 DctQ TRAP-type C4-dica 98.8 6.2E-07 1.3E-11 93.2 20.0 147 46-194 207-360 (379)
73 TIGR00770 Dcu anaerobic c4-dic 98.8 2.5E-07 5.5E-12 99.4 17.8 169 365-544 12-181 (430)
74 TIGR00771 DcuC c4-dicarboxylat 98.7 5.1E-07 1.1E-11 96.0 18.3 145 46-192 231-387 (388)
75 COG1593 DctQ TRAP-type C4-dica 98.7 0.00021 4.6E-09 74.5 36.0 133 398-541 228-360 (379)
76 PRK15060 L-dehydroascorbate tr 98.7 1.8E-06 3.9E-11 92.4 21.3 146 47-194 254-406 (425)
77 COG1288 Predicted membrane pro 98.7 1E-05 2.2E-10 84.8 25.1 129 77-206 111-241 (481)
78 PRK10034 fructuronate transpor 98.6 0.00028 6.1E-09 76.1 36.5 153 36-191 28-188 (447)
79 PF07399 DUF1504: Protein of u 98.6 3E-05 6.5E-10 80.6 27.5 336 52-544 84-437 (438)
80 COG2610 GntT H+/gluconate symp 98.6 0.00022 4.8E-09 76.3 34.9 155 33-190 23-185 (442)
81 TIGR02123 TRAP_fused TRAP tran 98.6 0.00023 5E-09 79.8 36.7 102 399-501 390-491 (613)
82 COG2704 DcuB Anaerobic C4-dica 98.4 1.3E-05 2.7E-10 82.0 18.1 165 27-199 18-187 (436)
83 PF07158 MatC_N: Dicarboxylate 98.4 1.9E-05 4.1E-10 72.1 16.7 120 361-481 14-135 (149)
84 PF06808 DctM: DctM-like trans 98.3 2.6E-05 5.5E-10 84.0 17.6 142 49-192 256-404 (416)
85 COG2056 Predicted permease [Ge 98.3 0.0026 5.7E-08 65.3 30.3 158 39-197 25-206 (444)
86 PRK11339 abgT putative aminobe 98.2 0.0045 9.7E-08 67.4 32.6 94 61-158 86-179 (508)
87 COG1757 NhaC Na+/H+ antiporter 98.1 0.017 3.6E-07 63.5 35.1 118 77-196 97-215 (485)
88 TIGR02123 TRAP_fused TRAP tran 98.1 0.00032 6.9E-09 78.7 21.5 144 49-194 371-522 (613)
89 TIGR00819 ydaH p-Aminobenzoyl- 98.1 0.031 6.7E-07 61.2 36.3 94 62-159 83-176 (513)
90 PF02652 Lactate_perm: L-lacta 98.0 0.038 8.3E-07 61.1 38.4 132 395-542 382-515 (522)
91 TIGR00931 antiport_nhaC Na+/H+ 97.9 0.00032 7E-09 76.2 17.1 122 64-186 310-432 (454)
92 PF07854 DUF1646: Protein of u 97.9 0.0015 3.3E-08 66.2 19.4 149 40-193 31-192 (347)
93 PRK09804 putative cryptic C4-d 97.8 0.0014 2.9E-08 70.3 19.4 193 7-200 240-451 (455)
94 COG3069 DcuC C4-dicarboxylate 97.8 0.045 9.8E-07 56.7 28.0 135 64-207 74-218 (451)
95 PF03553 Na_H_antiporter: Na+/ 97.7 0.0016 3.4E-08 67.0 17.4 106 64-169 162-268 (303)
96 PF03605 DcuA_DcuB: Anaerobic 97.6 0.0017 3.6E-08 67.4 14.3 171 362-545 9-183 (364)
97 COG1906 Uncharacterized conser 97.5 0.1 2.2E-06 53.1 25.9 149 39-194 28-183 (388)
98 TIGR00791 gntP gluconate trans 97.4 0.017 3.7E-07 62.8 20.2 160 366-538 18-185 (440)
99 TIGR00795 lctP L-lactate trans 97.3 0.44 9.6E-06 53.0 39.1 111 62-181 68-183 (530)
100 COG1757 NhaC Na+/H+ antiporter 97.2 0.011 2.3E-07 65.0 16.3 124 65-188 325-450 (485)
101 PF03606 DcuC: C4-dicarboxylat 97.2 0.008 1.7E-07 65.7 15.1 158 39-200 289-461 (465)
102 COG3069 DcuC C4-dicarboxylate 97.1 0.014 3.1E-07 60.3 14.5 190 3-194 234-441 (451)
103 PRK11588 hypothetical protein; 96.9 0.088 1.9E-06 57.6 19.8 191 7-198 284-496 (506)
104 COG2056 Predicted permease [Ge 96.8 0.054 1.2E-06 55.9 16.2 181 7-195 240-441 (444)
105 PRK10420 L-lactate permease; P 96.7 1.4 3E-05 49.2 37.4 122 51-181 59-192 (551)
106 TIGR00529 AF0261 converved hyp 96.7 0.13 2.7E-06 55.0 18.7 159 369-545 20-185 (387)
107 COG4664 FcbT3 TRAP-type mannit 96.6 0.75 1.6E-05 47.4 22.6 136 398-544 293-430 (447)
108 PRK10472 low affinity gluconat 96.4 0.42 9E-06 51.9 20.4 162 366-541 22-192 (445)
109 PRK09695 glycolate transporter 96.4 2.4 5.3E-05 47.4 39.9 101 400-510 414-516 (560)
110 COG2851 CitM H+/citrate sympor 96.3 0.064 1.4E-06 55.8 13.1 163 11-184 235-409 (433)
111 PRK10034 fructuronate transpor 96.1 0.6 1.3E-05 50.7 19.6 161 366-540 21-190 (447)
112 PF04165 DUF401: Protein of un 96.0 0.2 4.3E-06 53.4 15.5 141 43-196 230-379 (385)
113 PF02447 GntP_permease: GntP f 95.9 0.63 1.4E-05 50.5 18.9 162 368-543 20-190 (441)
114 PF02652 Lactate_perm: L-lacta 95.8 0.2 4.4E-06 55.5 15.2 133 51-190 368-510 (522)
115 PRK09821 putative transporter; 95.8 1.1 2.4E-05 48.7 20.3 163 367-544 23-195 (454)
116 PRK14984 high-affinity glucona 95.8 0.79 1.7E-05 49.6 19.0 159 367-541 19-188 (438)
117 PF02667 SCFA_trans: Short cha 95.3 5.3 0.00011 43.3 27.7 135 72-211 67-216 (453)
118 PF07854 DUF1646: Protein of u 95.2 0.025 5.5E-07 57.5 4.7 73 112-194 266-339 (347)
119 TIGR00819 ydaH p-Aminobenzoyl- 95.1 2.7 5.9E-05 46.3 20.3 139 52-194 329-486 (513)
120 PF03806 ABG_transport: AbgT p 95.0 7.1 0.00015 42.9 31.0 100 61-170 76-175 (502)
121 PRK10420 L-lactate permease; P 95.0 0.47 1E-05 52.9 14.3 113 51-170 388-507 (551)
122 PRK09695 glycolate transporter 95.0 0.53 1.2E-05 52.6 14.8 113 51-170 396-515 (560)
123 COG2704 DcuB Anaerobic C4-dica 94.8 0.056 1.2E-06 55.9 6.2 170 361-544 12-185 (436)
124 PRK11339 abgT putative aminobe 94.8 3.3 7.1E-05 45.6 19.9 153 52-208 327-498 (508)
125 PRK09921 permease DsdX; Provis 94.7 2.9 6.2E-05 45.6 19.5 160 367-541 24-192 (445)
126 TIGR00795 lctP L-lactate trans 94.7 0.81 1.8E-05 50.9 15.5 132 51-189 374-515 (530)
127 COG4664 FcbT3 TRAP-type mannit 94.6 1.7 3.7E-05 44.9 15.9 153 40-194 265-427 (447)
128 COG2610 GntT H+/gluconate symp 94.5 4.3 9.3E-05 44.0 19.6 123 366-491 19-148 (442)
129 COG1288 Predicted membrane pro 94.1 1.8 4E-05 46.2 15.5 184 9-198 275-474 (481)
130 TIGR00366 conserved hypothetic 93.9 11 0.00024 40.7 32.5 95 73-169 65-167 (438)
131 COG1620 LldP L-lactate permeas 93.3 1.6 3.5E-05 47.7 13.9 122 43-171 353-481 (522)
132 PF03553 Na_H_antiporter: Na+/ 92.9 2.1 4.5E-05 43.8 13.8 104 402-507 163-267 (303)
133 TIGR03802 Asp_Ala_antiprt aspa 91.4 1.9 4.1E-05 48.4 12.0 40 288-327 311-360 (562)
134 PF06450 NhaB: Bacterial Na+/H 91.3 2.4 5.2E-05 44.7 11.6 182 10-199 301-496 (515)
135 PF06166 DUF979: Protein of un 90.6 9.9 0.00021 38.8 14.8 141 391-543 153-300 (308)
136 COG4756 Predicted cation trans 89.6 0.36 7.8E-06 47.7 3.7 73 111-193 277-350 (367)
137 TIGR00366 conserved hypothetic 87.6 18 0.00038 39.2 15.1 128 51-182 291-430 (438)
138 PF02690 Na_Pi_cotrans: Na+/Pi 85.1 4.5 9.7E-05 36.9 8.0 83 68-160 2-85 (142)
139 PF07399 DUF1504: Protein of u 83.4 26 0.00056 37.5 13.5 79 106-192 347-432 (438)
140 COG4756 Predicted cation trans 81.9 2.3 5E-05 42.2 4.9 68 107-177 121-190 (367)
141 PRK03818 putative transporter; 81.6 6.5 0.00014 44.1 9.1 36 292-327 304-343 (552)
142 COG1620 LldP L-lactate permeas 81.1 95 0.0021 34.4 35.5 126 400-540 379-506 (522)
143 PF06166 DUF979: Protein of un 80.6 67 0.0014 32.9 14.8 137 58-201 157-305 (308)
144 PRK10519 hypothetical protein; 80.1 33 0.00072 31.7 11.7 127 398-547 21-148 (151)
145 PF03806 ABG_transport: AbgT p 75.6 90 0.0019 34.5 15.2 120 72-195 348-480 (502)
146 COG3067 NhaB Na+/H+ antiporter 71.7 22 0.00048 36.8 8.8 157 34-195 319-492 (516)
147 COG2978 AbgT Putative p-aminob 71.2 1.6E+02 0.0035 32.1 26.1 93 62-158 88-180 (516)
148 COG1906 Uncharacterized conser 70.8 1.4E+02 0.003 31.2 14.0 125 56-194 250-381 (388)
149 TIGR00704 NaPi_cotrn_rel Na/Pi 64.5 40 0.00088 34.9 9.3 86 66-160 12-97 (307)
150 PF02667 SCFA_trans: Short cha 62.0 76 0.0016 34.6 11.0 126 64-194 319-445 (453)
151 PF06149 DUF969: Protein of un 59.0 1.8E+02 0.004 28.4 14.6 178 362-544 10-207 (218)
152 COG1283 NptA Na+/phosphate sym 58.8 61 0.0013 36.1 9.8 88 67-163 142-230 (533)
153 COG3817 Predicted membrane pro 57.2 1.6E+02 0.0036 29.5 11.4 117 392-514 158-282 (313)
154 PF02690 Na_Pi_cotrans: Na+/Pi 57.1 75 0.0016 28.9 8.7 85 404-500 1-86 (142)
155 PF06149 DUF969: Protein of un 54.6 2.2E+02 0.0047 27.9 15.8 159 37-200 22-210 (218)
156 COG4666 TRAP-type uncharacteri 51.7 4.2E+02 0.009 30.2 19.2 112 73-190 196-315 (642)
157 PF13726 Na_H_antiport_2: Na+- 49.0 1.6E+02 0.0034 24.7 9.7 56 40-95 25-86 (88)
158 COG3817 Predicted membrane pro 46.5 1.6E+02 0.0035 29.5 9.5 137 59-201 162-309 (313)
159 TIGR00704 NaPi_cotrn_rel Na/Pi 46.4 3.3E+02 0.0072 28.2 12.4 92 398-500 132-224 (307)
160 COG1283 NptA Na+/phosphate sym 42.9 2.4E+02 0.0053 31.5 11.3 93 398-501 136-229 (533)
161 COG0700 SpmB Uncharacterized m 35.7 2.7E+02 0.0058 25.8 8.5 126 401-547 33-158 (162)
162 PRK10519 hypothetical protein; 29.6 3.9E+02 0.0084 24.7 8.8 70 64-143 25-97 (151)
163 PRK12911 bifunctional preprote 29.3 9.6E+02 0.021 30.1 13.9 46 84-131 981-1026(1403)
164 PF13726 Na_H_antiport_2: Na+- 26.6 3.8E+02 0.0083 22.4 9.5 29 403-431 57-85 (88)
165 COG2031 AtoE Short chain fatty 26.5 4.3E+02 0.0092 28.5 9.3 136 74-212 69-216 (446)
166 COG2978 AbgT Putative p-aminob 25.8 7E+02 0.015 27.5 10.9 130 76-209 364-506 (516)
167 PRK04972 putative transporter; 24.0 1.1E+02 0.0024 34.4 5.0 40 288-327 311-355 (558)
168 PF10066 DUF2304: Uncharacteri 23.5 3.8E+02 0.0083 23.2 7.3 32 397-429 29-60 (115)
169 TIGR00825 EIIBC-GUT PTS system 23.4 1.6E+02 0.0035 30.1 5.3 98 64-162 188-289 (331)
170 PF13194 DUF4010: Domain of un 21.9 6.4E+02 0.014 24.5 9.2 20 108-127 24-43 (211)
No 1
>PLN00136 silicon transporter; Provisional
Probab=100.00 E-value=4.7e-64 Score=542.11 Aligned_cols=471 Identities=61% Similarity=1.030 Sum_probs=365.4
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHH
Q 009002 1 MAMASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLE 80 (547)
Q Consensus 1 ~~~~~~~k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~ 80 (547)
|+..+..|.+...+++...|++.++.+++.++++++.++++|+++++++|+++++|+++.+||+++++++|||+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~ 80 (482)
T PLN00136 1 MALASLPKVVLGSLAFGVFWMLAVFPSVPFLPIGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLK 80 (482)
T ss_pred CCCCcccchhhHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccc
Q 009002 81 SADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATP 160 (547)
Q Consensus 81 ~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~Tp 160 (547)
++|++|++++++.+..++++++++.++++++++|+|++|++++++|+|+++++|++.|++|.+++++++++||+||++||
T Consensus 81 ~tG~~~~ia~~l~~~~~~~~~ll~~l~~~ta~lSafl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~Tp 160 (482)
T PLN00136 81 NAGMFKHLGRLLAWRSQGGRDLLCRVCVVTALASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATP 160 (482)
T ss_pred HcCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 99999999999988777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCcccccc
Q 009002 161 IGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFT 240 (547)
Q Consensus 161 iG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~ 240 (547)
+|||+|+++.+.++++|.||++.++|+.++++++++.++++++||.++.+.+.+...++. |. .++...++ +.
T Consensus 161 iG~p~Nlii~~~~~i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~--~~-~~~~~~~~-~~---- 232 (482)
T PLN00136 161 IGNPQNLVIAFNSKITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQM--EA-VEEGRSPA-SA---- 232 (482)
T ss_pred ccccchheeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhh--hh-hhcccccc-hh----
Confidence 999999999998899999999999999999999999999999999886432210000000 00 00000000 00
Q ss_pred ccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcc
Q 009002 241 SLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRG 320 (547)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (547)
..++ +..+ .++.. . .+.+
T Consensus 233 -~~~~-------~~~~-------------~~~~~-----~-----------------------------~~~~------- 250 (482)
T PLN00136 233 -KSTK-------QQSP-------------ALLQA-----G-----------------------------LNGD------- 250 (482)
T ss_pred -hhhh-------hhhh-------------hhhhc-----c-----------------------------cccc-------
Confidence 0000 0000 00000 0 0000
Q ss_pred cccchhhhhHHHhhcccccccc-----chhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCChHHHH
Q 009002 321 IGSVITLVNVLLRQLSRGKESL-----SSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSL 395 (547)
Q Consensus 321 l~~gd~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~~~~~~~~~ 395 (547)
..+|+ ..+...+++++.+ ..++|+.+.+.+...+++.++.....|+|++++|+.++.++++.+..+.+|++
T Consensus 251 -~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~ll~~~~~~~v~~~~l~~f~~g~p~~~iAl~~a~~lll~~~~~~~~~l 326 (482)
T PLN00136 251 -GNGDM---SSMMSENISTKHPWFMQCTEHRRKLFLKSFAYVVTVGMVVAYMVGLNMSWTAITTAIALVVVDFRDAEPCL 326 (482)
T ss_pred -ccchh---HHHhhccccccccccccchhccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00000 0000000000000 02234444444432333444445567899999999999999988888999999
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009002 396 EKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAI 475 (547)
Q Consensus 396 ~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~ 475 (547)
+++||++++||+|+|++++|++++|+.+++++.+....+.+.....+.+.+++.++|+++||+|++++|.|.+.. .+..
T Consensus 327 ~~v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~~~~~~~~~~~s~~lS~~isNvp~~~~m~p~v~~-~~~~ 405 (482)
T PLN00136 327 DTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNSVGGISVLSVIILLLSNLASNVPTVLLMGDEVAA-AAAL 405 (482)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-Hhcc
Confidence 999999999999999999999999999999999876644444445556677889999999999999999996653 2222
Q ss_pred hcC-CchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhhc
Q 009002 476 SAA-DEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLI 546 (547)
Q Consensus 476 ~~~-~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~i 546 (547)
.+. .+...|+.+++++|+|||+||+||.+|+++.+.++|++++||+++|+||+|+|+|+++++++++.+.+
T Consensus 406 ~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~~~~G~~isf~~f~k~G~P~~l~~~~i~~~~~ 477 (482)
T PLN00136 406 ISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAIGIPLI 477 (482)
T ss_pred cCCcccchHHHHHHHHHhhccceeeccchhHHHHHHHHHHhhccCCcccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 221 12458888999999999999999999999999998754469999999999999999999999988753
No 2
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-59 Score=481.09 Aligned_cols=483 Identities=29% Similarity=0.437 Sum_probs=346.7
Q ss_pred ccchhH---HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHH
Q 009002 3 MASTVK---VVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYL 79 (547)
Q Consensus 3 ~~~~~k---~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l 79 (547)
+.+-+| ..+|..+++.+|++++|+..+..+..+....+.++.++++....+++++.+++|++++.+++|||+++..+
T Consensus 169 ~~Pl~~~~gv~~aa~il~gfyaLiVfe~v~rt~aa~~~s~ls~a~Lavi~~rptle~iv~wID~etL~LLfGmMilv~il 248 (685)
T KOG2639|consen 169 YAPLIKETGVLYAAVILAGFYALIVFEIVDRTFAAMLASTLSLAILAVIGDRPTLETIVSWIDFETLGLLFGMMILVAIL 248 (685)
T ss_pred ccceeeccchHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345556 89999999999999999998888888777777888888888899999999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccc
Q 009002 80 ESADMFKYLGRMLSWKSRGP-KDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSA 158 (547)
Q Consensus 80 ~~sG~~~~ia~~i~~~~~~~-~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~ 158 (547)
++||+|||+|....+.++|+ |.++..+|++++++|+|+||++++++|+|+++++|+.++++|.++++.++..||+||.+
T Consensus 249 seTg~FdYlav~ayriSrG~~w~li~~Lclvtav~Sa~ldN~TtvLLltpv~IRLcevm~L~p~pvLi~~vi~aNIGga~ 328 (685)
T KOG2639|consen 249 SETGVFDYLAVLAYRISRGHVWPLICLLCLVTAVLSAFLDNVTTVLLLTPVVIRLCEVMNLDPHPVLIAVVIYANIGGAA 328 (685)
T ss_pred hhccHHHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhcCCeEEEEecHHHHHHHHHhcCCCCceEEEEEEeccccccc
Confidence 99999999999988888886 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccchheeec-----CCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhh--hcCCCcchhhhhhHHhhhccccccc
Q 009002 159 TPIGNPQNLVIAVQ-----SKIPFGKFLIGILPAMFVGVAVNALILLTMYWKL--LNSHKDEEDATAEVVAEEDVTSHRF 231 (547)
Q Consensus 159 TpiG~p~Nliv~~~-----~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~l--Lp~~~~~~~~~~~~~~e~~v~~~~~ 231 (547)
||||+|||+++..+ .|++|.+|..+++|..+.+++..+.++.+++|.. +-. +++ .++...++++..++.
T Consensus 329 TPIGdPpNvIIatns~i~~~gv~f~~Ftahm~pgvlla~l~~~~~lrlly~~~~~l~~-k~~---~e~~el~~ei~v~r~ 404 (685)
T KOG2639|consen 329 TPIGDPPNVIIATNSEIPKAGVDFAVFTAHMLPGVLLAMLQTFMYLRLLYWNIEELMV-KEP---DEEVELKHEIHVWRL 404 (685)
T ss_pred CcCCCCCcEEEEecceecccCcchhhhhHHHHHHHHHHHHHHhhhHhhheechHHHhc-cCc---hHHHHHHHHHHHhhc
Confidence 99999999999854 5788999999999998888776655554444431 100 000 011111111111111
Q ss_pred CCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCccc
Q 009002 232 SPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQR 311 (547)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
.++...- -.++ .+..|... .++++.. .+++++....
T Consensus 405 ~~~~~s~---~sk~-----------------------~envR~~~---~~~i~~r----~~~lr~r~~~----------- 440 (685)
T KOG2639|consen 405 AAAQVSP---ASKE-----------------------EENVRRTL---SAKIRAR----ARSLRERLPT----------- 440 (685)
T ss_pred CHhhcCc---ccch-----------------------HHHHHHHH---HHHHHHH----HHHHhhhccc-----------
Confidence 1111000 0000 00011000 0000000 0011100000
Q ss_pred ccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHH--HHHHHHHH----HhCCcHHHHHHHHHHHH-H
Q 009002 312 REETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLI--TLGMLVSL----LMGLNMSWTAITAALAL-V 384 (547)
Q Consensus 312 ~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~i~~~----~~gi~~~~~al~~a~~l-~ 384 (547)
+...++.+ ..+-.+++..++...++|..+.++...+. .+.+++.. ..|++++|+|++||.++ +
T Consensus 441 ------~~~~~~a~----~y~~tl~~l~~~~~irnk~ll~k~~~aL~fviv~F~l~svp~~~~gl~LgW~AIlgA~llLI 510 (685)
T KOG2639|consen 441 ------SCNSNPAE----NYFNTLAELQAKNRIRNKTLLIKCLRALWFVIVCFFLQSVPSLHMGLSLGWTAILGAILLLI 510 (685)
T ss_pred ------cccCCccH----HHHhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhccHHHhcCCCccHHHHHHHHHHHH
Confidence 00000000 00000111112223444555555543322 22222222 23789999999977654 4
Q ss_pred HhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhc-chhh----HHHHHHHHHHHHHHhhchHH
Q 009002 385 VLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEI-DHVG----GIAVLAAVILVLSNLASNVP 459 (547)
Q Consensus 385 ~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~-~~~~----~~~~l~~v~~~lS~~isN~p 459 (547)
+.+.+|.+..+++|+|++++||++||++..+++++|+.+|+++........ +... .+..+.+++++.|.|++|+|
T Consensus 511 l~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lGli~~l~dlte~vil~v~e~~~~~vAi~iilw~SAlasafidNip 590 (685)
T KOG2639|consen 511 LADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLGLIEWLGDLTEPVILSVGESYRLMVAIVIILWVSALASAFIDNIP 590 (685)
T ss_pred HhchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhHHhhhcchhhhhHHHHHHHHHHHHHHHHHhccCc
Confidence 567888999999999999999999999999999999999999998765432 2111 23445578899999999999
Q ss_pred HHHHHHHHHHHHHH-HhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHH
Q 009002 460 TVLLLGGRVAASAA-AISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIV 538 (547)
Q Consensus 460 ~~~ll~P~ia~~~a-~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~ 538 (547)
.++.|++......+ ...|.+.++..|++++++|.|||+|.+|+.||+++.+.+++ |||+++|.+|+|+|+|+|+.+
T Consensus 591 vt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~gGNgTLiGasANvv~A~iAeq---HGYkltF~~fF~~GfPmml~s 667 (685)
T KOG2639|consen 591 VTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLGGNGTLIGASANVVAAGIAEQ---HGYKLTFTQFFKVGFPMMLGS 667 (685)
T ss_pred chHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhcCCceeechhhHHHHHHHHHH---cCceEEehhHHHhcccHHHHH
Confidence 99999985433333 24455555677889999999999999999999999888765 899999999999999999999
Q ss_pred HHHHhhhc
Q 009002 539 TAIGLPLI 546 (547)
Q Consensus 539 ~iv~~~~i 546 (547)
..++.+.+
T Consensus 668 i~i~t~yL 675 (685)
T KOG2639|consen 668 ITIGTVYL 675 (685)
T ss_pred HHHHHHHH
Confidence 99887653
No 3
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-57 Score=473.68 Aligned_cols=403 Identities=30% Similarity=0.485 Sum_probs=330.6
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHh--cCChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q 009002 12 GSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYA--AIDLPILGLLFGTMVVSVYLESADMFKYLG 89 (547)
Q Consensus 12 a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~--~~~~~~i~~l~~~~il~~~l~~sG~~~~ia 89 (547)
++++|...++.+.. .+ +++++.+++|+.+++.+|+++++|+.. +.+|++++++.|||+++..++++|+|||.|
T Consensus 8 ~l~~~~l~~~~~~p---~~--~~~~~~a~~Ga~l~l~~giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a 82 (424)
T COG1055 8 ALFIFTLVYVLIRP---RK--LPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLA 82 (424)
T ss_pred HHHHHHHHHHhhhc---Cc--CchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 34444455554443 33 445688999999999999999999998 689999999999999999999999999999
Q ss_pred HHHHhhcCC-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchh
Q 009002 90 RMLSWKSRG-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLV 168 (547)
Q Consensus 90 ~~i~~~~~~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nli 168 (547)
.++.+.+++ ++++++.+.++++++|+|++||+++++++|+++.+||+.|.+|.|+++..+++||+||..||+|||||++
T Consensus 83 ~~~v~~s~g~~~~L~~~l~ll~a~~SA~l~N~tt~LlltPivl~~~~~~~~~~~p~l~~~~f~aN~gg~~t~iGdp~nii 162 (424)
T COG1055 83 IKMVKRSKGSGLKLLLLLVLLGALLSAFLDNDTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNII 162 (424)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHcccceeehhhhHHHHHHHHcCCCccHHHHHHHHHHcccccccccCChHHHH
Confidence 999999876 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHH-HhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccc
Q 009002 169 IAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMY-WKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEW 247 (547)
Q Consensus 169 v~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~-~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~ 247 (547)
+++..|++|.||...+.|+.++++++.++++++++ +|..|++.+.+ ++
T Consensus 163 i~~~~gisF~~f~~~m~~p~l~~li~~~~vl~~~~~~~~~~~~~~~~---------~~---------------------- 211 (424)
T COG1055 163 IASAAGISFNDFLANMFPPSLISLIATLVVLYLLFRRKVIPERYDDL---------LL---------------------- 211 (424)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh---------cc----------------------
Confidence 99999999999999999999999998887777776 33333221100 00
Q ss_pred hhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhh
Q 009002 248 NSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITL 327 (547)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l 327 (547)
.++ +
T Consensus 212 ------------------------~~~------------------------------------~---------------- 215 (424)
T COG1055 212 ------------------------LDP------------------------------------R---------------- 215 (424)
T ss_pred ------------------------cCh------------------------------------h----------------
Confidence 000 0
Q ss_pred hhHHHhhccccccccchhhHHHHHHHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCChHH----HHhhcChh
Q 009002 328 VNVLLRQLSRGKESLSSEWKRVLRKSCVY--LITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARP----SLEKVSYS 401 (547)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~~~~~~~----~~~~idw~ 401 (547)
+..+.|+.+.+.... .+.++++.....|+|+...++.++.+++....+++++ .++++||+
T Consensus 216 --------------~ai~~~~l~~~~~~vl~~vli~f~~~~~~~i~~~~val~~a~ill~~~~~~~~~~~~~il~~v~W~ 281 (424)
T COG1055 216 --------------EAIRDRALFKLSLVVLALVLIAFLLLPFLGIPVSLVALVGAAILLLLARLSPRESVNKILRGVEWS 281 (424)
T ss_pred --------------cccccHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHhccCcchhHHHhhhcCChH
Confidence 000112222222221 2334444455678999999999999988887777777 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCch
Q 009002 402 LLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEK 481 (547)
Q Consensus 402 ~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~ 481 (547)
+++||+|+|++++|++++|..+.+++.+....+.+.........+++.++|+++||.|+++.+.|.+...... .+.. .
T Consensus 282 ~l~Ff~Glfi~V~gl~~~Gv~~~la~~l~~~~~~~~~~~~~~~~~~s~~lSsv~~NvP~vl~~~~~i~~~~~~-~~~~-~ 359 (424)
T COG1055 282 TLLFFIGLFIVVGGLENAGVTEDLASVLKALSSGGLAAATLGIGWLSGLLSSVLDNVPTVLTFAPIIKGLAAN-GMGK-E 359 (424)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhccc-ccch-H
Confidence 9999999999999999999999999999877654455556677889999999999999999999965432221 1111 3
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 482 KAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 482 ~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
..|+..++++|+|||+|||||.||+++++.+|| +|.+++|++|+|+|.|.++..++++...
T Consensus 360 ~lw~A~a~Ga~lGgnlT~IGs~Anlv~~~i~~~---~g~~is~~~f~k~g~~i~~~~l~i~~~~ 420 (424)
T COG1055 360 PLWLALALGADLGGNLTPIGSAANLVWLGVLER---KGVPISFGEFFKVGIIVTLPSLFITLLY 420 (424)
T ss_pred HHHHHHHHhCccccchhhhhhHHHHHHHHHHHH---CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999987 5888999999999999999999887653
No 4
>PRK15445 arsenical pump membrane protein; Provisional
Probab=100.00 E-value=2.2e-53 Score=456.60 Aligned_cols=405 Identities=21% Similarity=0.285 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHh--cCChhHHHHHHHHHHHHHHHHHhcHHHHH
Q 009002 11 LGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYA--AIDLPILGLLFGTMVVSVYLESADMFKYL 88 (547)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~--~~~~~~i~~l~~~~il~~~l~~sG~~~~i 88 (547)
.++++|+.+++++++++ ..+|. ++++++++.+++++|+++++|+++ +++|+++++++|+|+++.+++++|++|++
T Consensus 2 ~~l~i~~~~~~~~~~~~-~~ip~--~~~all~~~ll~~~gv~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~i 78 (427)
T PRK15445 2 LAIAIFLLTLVLVIWQP-KGLGI--GWSALLGAVLALLTGVVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWA 78 (427)
T ss_pred HHHHHHHHHHHHHhccc-CCCCh--HHHHHHHHHHHHHHcCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 46678888888888875 23454 578999999999999999999985 69999999999999999999999999999
Q ss_pred HHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhhccccccCcc
Q 009002 89 GRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPP---HPFLLALASSANIGSSATPIGNP 164 (547)
Q Consensus 89 a~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p---~~~l~~~a~aa~~Gg~~TpiG~p 164 (547)
++++.++.+ ++++++..+++.++++|+|+||++++++++|++.++|++.|.+| .+++++.++++|.||..||+|||
T Consensus 79 a~~~~~~~~~~~~~l~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~ig~~ 158 (427)
T PRK15445 79 ALHVARWAKGNGRKLFVYIVLLGAAVAALFANDGAALILTPIVLAMLLALGFSKKATLAFVMAAGFIADTASLPLVVSNL 158 (427)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhcccccccccCCc
Confidence 999988766 46788899999999999999999999999999999999999999 57788999999999999999999
Q ss_pred cchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCcccccccccc
Q 009002 165 QNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNS 244 (547)
Q Consensus 165 ~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~ 244 (547)
+|++..+..+++|.||++.++|+.++++++...++++++|+..+++.+. ++ .++
T Consensus 159 ~N~i~~~~~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r~~~~~~~~~----------~~----------------~~~ 212 (427)
T PRK15445 159 VNIVSADYFGIGFAEYASVMVPVNLVSLAASLLVLWLYFRKDIPKTYDL----------EL----------------LKE 212 (427)
T ss_pred hHhhhhccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCccccc----------cc----------------ccC
Confidence 9999888789999999999999999988776655555554433211000 00 000
Q ss_pred ccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccc
Q 009002 245 QEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSV 324 (547)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 324 (547)
. + +
T Consensus 213 ~---------------------------~--------------------------------------~------------ 215 (427)
T PRK15445 213 P---------------------------A--------------------------------------S------------ 215 (427)
T ss_pred h---------------------------h--------------------------------------h------------
Confidence 0 0 0
Q ss_pred hhhhhHHHhhccccccccchhhHHHHHHHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHh----cCCChHHHHhhc
Q 009002 325 ITLVNVLLRQLSRGKESLSSEWKRVLRKSCVY--LITLGMLVSLLMGLNMSWTAITAALALVVL----DFKDARPSLEKV 398 (547)
Q Consensus 325 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~i~~~~~gi~~~~~al~~a~~l~~~----~~~~~~~~~~~i 398 (547)
..++|+...+.... ...+++......++|..+++++++.++++. ++.+.+|++|++
T Consensus 216 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~va~~~a~ll~~~~~~~~~~~~~~~~~~v 277 (427)
T PRK15445 216 ------------------AIKDPALFKLGWIVLALLLVGYFVLEPLGIPVSAIAGVGALILLLVARRGHAINTKKVLKGA 277 (427)
T ss_pred ------------------hccCHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHhC
Confidence 00001111111111 111222333345789999999999887764 456789999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC
Q 009002 399 SYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAA 478 (547)
Q Consensus 399 dw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~ 478 (547)
||++++|++|+|++++++++||+.+++++.+.+..+.++......+.+++.++|||+||+|+++++.|.+ ..++..+.
T Consensus 278 ~W~~l~~~~g~~~l~~al~~tG~~~~la~~l~~~~~~~~~~~~~~~~~~s~~lS~~~sN~p~~~~~~~~i--~~~~~~~~ 355 (427)
T PRK15445 278 PWQIVIFSLGMYLVVYGLRNAGLTDYLAGVLNYLADQGLFAATLGTGFLAAFLSSVMNNMPTVLIGALAI--DGSNATGV 355 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HhccCCcc
Confidence 9999999999999999999999999999998655333333334456678999999999999999875533 22333344
Q ss_pred CchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 479 DEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 479 ~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
++...++.++++++.|||+||+||++|+++.+.+++ +||+++|+||+|+|+|+++++++++..
T Consensus 356 ~~~~l~~al~~ga~~gg~~T~iGs~an~i~~~~~~~---~g~~i~f~~f~k~G~~~~~~~~~~~~~ 418 (427)
T PRK15445 356 IKEAMIYANVIGSDLGPKITPIGSLATLLWLHVLAQ---KGVKISWGYYFKVGIIITLPVLLVTLL 418 (427)
T ss_pred hHHHHHHHHHHhcccCcccchhhhHHHHHHHHHHHH---CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 555677888999999999999999999999999887 689999999999999999999987764
No 5
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=100.00 E-value=1.6e-51 Score=440.89 Aligned_cols=401 Identities=21% Similarity=0.307 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcC--ChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q 009002 12 GSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAI--DLPILGLLFGTMVVSVYLESADMFKYLG 89 (547)
Q Consensus 12 a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~--~~~~i~~l~~~~il~~~l~~sG~~~~ia 89 (547)
++.+++.++++++++.. .+|. ..++++++.++.++|++++||+++++ +|+++++++|+|+++.++++||++++++
T Consensus 2 ~l~i~~~~i~l~~~~~~-~i~~--~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia 78 (416)
T cd01118 2 AIAIFVLTLVLVIWRPF-GLPE--AVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVA 78 (416)
T ss_pred HHHHHHHHHHHHHHccC-CCCh--HHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 45667777777776631 2444 57899999999999999999999874 6999999999999999999999999999
Q ss_pred HHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhhccccccCccc
Q 009002 90 RMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPP---HPFLLALASSANIGSSATPIGNPQ 165 (547)
Q Consensus 90 ~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p---~~~l~~~a~aa~~Gg~~TpiG~p~ 165 (547)
+++.+..+ ++++++..++++++++|+|+||+++++++.|++.++|++.|.+| .+++++.++++|+||.+||+|||+
T Consensus 79 ~~l~~~~~~~~~~l~~~~~~~~~~ls~~~sn~a~~~~~~Pi~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~~~ 158 (416)
T cd01118 79 ALAARWARGSGRKLFTLIVLLGAAVTAFFANDGTALILTPIVIALLRALGAKKNRTLPFLYACAFIADAASLPLPISNLV 158 (416)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHcccccccccCCch
Confidence 99987765 47889999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred chheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccc
Q 009002 166 NLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQ 245 (547)
Q Consensus 166 Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~ 245 (547)
|+++++.++++|.||++.++|+.++++++...+.+.++|+.+|++.+. ++. .+
T Consensus 159 n~i~~~~~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~----------~~~----------------~~- 211 (416)
T cd01118 159 NIVTAGYFGIGFTEYAALMFLPSIVSILATYVVLYLFFRRALPKRLET----------ASV----------------KK- 211 (416)
T ss_pred HHHhHhccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccc----------ccc----------------cC-
Confidence 999998889999999999999999988776655555555444321100 000 00
Q ss_pred cchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccch
Q 009002 246 EWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVI 325 (547)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd 325 (547)
++
T Consensus 212 ------------------------------------------------------------------~~------------ 213 (416)
T cd01118 212 ------------------------------------------------------------------PS------------ 213 (416)
T ss_pred ------------------------------------------------------------------cc------------
Confidence 00
Q ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHH--HHHHHHHHHhCCcHHH-HHHHHHHHHHHhcCC---ChHHHHhhcC
Q 009002 326 TLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLI--TLGMLVSLLMGLNMSW-TAITAALALVVLDFK---DARPSLEKVS 399 (547)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~i~~~~~gi~~~~-~al~~a~~l~~~~~~---~~~~~~~~id 399 (547)
...++|+.....+..+. ...++.....+.+..+ +++.++.++++.++. +.+|+++++|
T Consensus 214 ----------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 277 (416)
T cd01118 214 ----------------LAIKDPLLFGLAWTLLVLLVVSAFGVDILLIPPSFIAGVLALIFLLLARRGGAINPLKVLKEAP 277 (416)
T ss_pred ----------------ccccchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHhCC
Confidence 00001111111111111 1111111123443444 445555555555555 8889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 009002 400 YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAAD 479 (547)
Q Consensus 400 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~ 479 (547)
|+++++|+|+|+++++++++|+.+++++.+.+..+.++......+.+++.++|||+||+|+++++.|++.. +.+
T Consensus 278 w~~ll~f~g~f~l~~al~~tG~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vls~~isNvp~~~l~~p~~~~------~~~ 351 (416)
T cd01118 278 WGVLLFSLGLYVVVFGLKNAGLTAILADLLNWLVSQGLLAAILGVGLLAAFLSNVMNNLPAVLIGALALAA------GHA 351 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc------ccc
Confidence 99999999999999999999999999999876533222222345567899999999999999999995421 345
Q ss_pred chHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 480 EKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 480 ~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
+...|+.+++++++|||+||+||+||+++++++++ +|++++|+||+|+|+|+++++++++...
T Consensus 352 ~~~~~~~l~~g~~~gg~~t~~gs~an~i~~~~~~~---~~~~~~~~~f~k~g~~~~~~~l~~~~~~ 414 (416)
T cd01118 352 PEALVYANLIGVDLGPKLTPIGSLATLLWLHVLRR---KGIRVSWGYYLKVGLIVTPPVLVVTLAA 414 (416)
T ss_pred cHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHH---CCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688899999999999999999999999998876 3445579999999999999999988754
No 6
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=100.00 E-value=9.4e-50 Score=421.32 Aligned_cols=404 Identities=27% Similarity=0.377 Sum_probs=325.5
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhc--CChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q 009002 12 GSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAA--IDLPILGLLFGTMVVSVYLESADMFKYLG 89 (547)
Q Consensus 12 a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~--~~~~~i~~l~~~~il~~~l~~sG~~~~ia 89 (547)
|.++|+.+.+++++. +.++|++ +.+..|+.+++++|+++++|+.+. ..||..+++.|++++++.++++|+|||+|
T Consensus 2 a~~if~~tl~~vi~r-P~~l~~~--~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A 78 (423)
T PF02040_consen 2 AIAIFLLTLLLVIWR-PRGLPEA--VWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLA 78 (423)
T ss_pred hHHHHHHHHHHHhcc-CCCCChH--HHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 678899999888875 6777876 779999999999999999999764 67999999999999999999999999999
Q ss_pred HHHHhhcCC-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhhccccccCccc
Q 009002 90 RMLSWKSRG-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPP---HPFLLALASSANIGSSATPIGNPQ 165 (547)
Q Consensus 90 ~~i~~~~~~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p---~~~l~~~a~aa~~Gg~~TpiG~p~ 165 (547)
.++.+++++ +++++..+++++++.|+|+|||+++++++|+++.++++.|++| .|+++..++.||.+|+..|++||+
T Consensus 79 ~~~a~~a~g~~~rLf~~v~ll~~~vTaflsND~talilTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSNlt 158 (423)
T PF02040_consen 79 LHAARWARGSGRRLFLLVYLLGAVVTAFLSNDATALILTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPVSNLT 158 (423)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccccCcH
Confidence 999988765 6889999999999999999999999999999999999999986 599999999999999999999999
Q ss_pred chheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccc
Q 009002 166 NLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQ 245 (547)
Q Consensus 166 Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~ 245 (547)
|++..+..+++|.||...+.++.++++++++..++++|||.+|++.+.+ +.++ |
T Consensus 159 NLv~~~~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~~~~~~~----------~~~~----p------------ 212 (423)
T PF02040_consen 159 NLVAADAFGISFLEYAAVMALPSLAAIAVTYLVLWLYFRRDLPKRYDLS----------ELPP----P------------ 212 (423)
T ss_pred HHHHHHccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh----------cccC----c------------
Confidence 9999999999999999999999999999999888999999998653210 0000 0
Q ss_pred cchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccch
Q 009002 246 EWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVI 325 (547)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd 325 (547)
+ +
T Consensus 213 ------------------------------------------------------------------~------~------ 214 (423)
T PF02040_consen 213 ------------------------------------------------------------------K------S------ 214 (423)
T ss_pred ------------------------------------------------------------------c------c------
Confidence 0 0
Q ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcCC----ChHHHHhhcC
Q 009002 326 TLVNVLLRQLSRGKESLSSEWKRVLRKSCVY--LITLGMLVSLLMGLNMSWTAITAALALVVLDFK----DARPSLEKVS 399 (547)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~~~----~~~~~~~~id 399 (547)
..+.++.++..... +++.+.+.....|+|.++++..++++++....+ +.++.+|+++
T Consensus 215 -----------------~i~d~~~~~~~~~vl~~ll~~~~~~~~~~ip~~~va~~~a~ill~~~~r~~~~~~~~~l~~~p 277 (423)
T PF02040_consen 215 -----------------AIKDPRLFRLSLVVLALLLAGFFVASFLGIPVSAVAGAGAVILLALARRSRKISPKRVLREVP 277 (423)
T ss_pred -----------------cccchhHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHhCC
Confidence 00001111112111 122334434456789988888888776654332 3468899999
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 009002 400 YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAAD 479 (547)
Q Consensus 400 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~ 479 (547)
|+++.|..|||+++.+++++|+.+.+++.+....+.+.....+.+.++++++||++||.|++.++.+.+ +.++..+..
T Consensus 278 W~il~F~~gLfvvV~~L~~~Gl~~~l~~~l~~~~~~~~~~a~~~~g~~~A~lsnl~NNLPa~Li~~~ai--~~~~~~~~~ 355 (423)
T PF02040_consen 278 WSILPFVLGLFVVVEGLENTGLTELLARLLGTAASQGLLAAILGMGFLSAILSNLMNNLPAVLIGALAI--QAAHAPGLV 355 (423)
T ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh--hcccCCchh
Confidence 999999999999999999999999999999765544444456677788999999999999888765533 222211111
Q ss_pred chHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 480 EKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 480 ~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
.+...+....|+++|+|+||+||.||++|.+.+|| +|++++|++|+|+|+++++.++++++.
T Consensus 356 ~~~~~~A~lIG~nlGp~lTp~GSLATLLWl~~L~~---~Gi~is~~~f~k~G~vlt~p~Ll~al~ 417 (423)
T PF02040_consen 356 REALIYALLIGVNLGPNLTPIGSLATLLWLHILRR---KGIKISWGEFLKLGLVLTPPVLLAALL 417 (423)
T ss_pred HHHHHHHHHHhcccCcccchHHhHHHHHHHHHHHH---CCCCCCHHHHHHHhHHHHHHHHHHHHH
Confidence 12355678899999999999999999999999988 699999999999999888877776654
No 7
>PLN00137 NHAD transporter family protein; Provisional
Probab=100.00 E-value=1.6e-49 Score=423.23 Aligned_cols=385 Identities=18% Similarity=0.264 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccC---ChHHHHhcCC------hhHHHHHHHHHHHHHHH
Q 009002 9 VVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVI---TPDQAYAAID------LPILGLLFGTMVVSVYL 79 (547)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~---~~~~a~~~~~------~~~i~~l~~~~il~~~l 79 (547)
-..++++|.++|.+++++.. ++++|+.+++.++.++++++.+ +++++++.++ ++++++++|||++++++
T Consensus 5 ~~~~~~if~~~y~~i~~e~~--~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l 82 (424)
T PLN00137 5 GLAMALVFGAGYAGIIFEES--LAFNKSGVALLMAVSLWVIRAIGAPSLEIVTLELRHALAEVSEIVFFLLGAMTIVEIV 82 (424)
T ss_pred hhHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999843 4577999999999999998888 8889888899 99999999999999999
Q ss_pred HHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHH-HHHHHHHHhhhccc
Q 009002 80 ESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPF-LLALASSANIGSSA 158 (547)
Q Consensus 80 ~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~-l~~~a~aa~~Gg~~ 158 (547)
+++|++|++++++.++ +++++++.++++++++|+|+|||+|++++.|++.++|++. +|.++ ++.++++||+||++
T Consensus 83 ~~~g~f~~~a~~~~~~--~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p~~~~~~~~~--~~~~~~~~~~~~aaNiGg~~ 158 (424)
T PLN00137 83 DAHQGFKLVTDSITTR--SPRTLLWVVGFITFFLSSILDNLTTTIVMVSLLRKLVPPS--EYRKLLGAVVVVAANAGGAW 158 (424)
T ss_pred HHcCcHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHhcccccee
Confidence 9999999999999876 8899999999999999999999999999999999999875 57777 67899999999999
Q ss_pred cccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCcccc
Q 009002 159 TPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSH 238 (547)
Q Consensus 159 TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~ 238 (547)
||||||||+++++.++++|.||+....|+.+++.++.+.++.+ +.+++..++ . ..+.
T Consensus 159 TpiGnp~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~~~----~~~~~~~~~---------~-~~~~--------- 215 (424)
T PLN00137 159 TPIGDVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALMSL----TSEENGSPQ---------D-SSPL--------- 215 (424)
T ss_pred ccCCCcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccCChh---------h-cccc---------
Confidence 9999999999999889999998877776666665543333222 222111000 0 0000
Q ss_pred ccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCC
Q 009002 239 FTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPS 318 (547)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (547)
++ ++
T Consensus 216 ----------------------------------~~-----------------------------------~~------- 219 (424)
T PLN00137 216 ----------------------------------LA-----------------------------------SE------- 219 (424)
T ss_pred ----------------------------------ch-----------------------------------hh-------
Confidence 00 00
Q ss_pred cccccchhhhhHHHhhccccccccchhhHHHHHHHHHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHhc----------
Q 009002 319 RGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYL-ITLGMLVSLLMGLNMSWTAITAALALVVLD---------- 387 (547)
Q Consensus 319 ~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~i~~~~~gi~~~~~al~~a~~l~~~~---------- 387 (547)
..++|+...+...+. +.+..+.....|+|+.+.++.++.++++..
T Consensus 220 ------------------------~~~~~~~l~~~l~i~~~~~~~~~~~~~gl~~~~~al~~~~~lll~~~~~~~~~~~~ 275 (424)
T PLN00137 220 ------------------------QMAPRGQLVFGVGVGALLFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESER 275 (424)
T ss_pred ------------------------hcccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhcccccc
Confidence 000011111222111 111113333467999999998876655531
Q ss_pred -CCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 009002 388 -FKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGG 466 (547)
Q Consensus 388 -~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P 466 (547)
+.+.+|+++++||++++||+|+|+++++++++|+.+.+++.+....+ . ...+..++.++||++||+|+++++.|
T Consensus 276 ~~~~~~~~l~~Vdw~tLlfF~GlFilvgal~~tG~~~~la~~l~~~~~--~---~~~i~~~s~ilS~~IsNVP~~~~~~p 350 (424)
T PLN00137 276 QALKVPQALSRIDTQGILFFLGILLSVGSLDAAGILRELANYLDANIP--N---VELIASAIGVASAIIDNVPLVAATMG 350 (424)
T ss_pred cccCHHHHHHhCCccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcC--C---chhHHHHHHHHHHHhcchHHHHHHhh
Confidence 25678999999999999999999999999999999999998854321 1 12466778899999999999999999
Q ss_pred HHHHHHHHhhcCC-chHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHH
Q 009002 467 RVAASAAAISAAD-EKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTA 540 (547)
Q Consensus 467 ~ia~~~a~~~~~~-~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~i 540 (547)
++. . .+.+ .+..|+.+++++|+|||+|+|||.||+++++..++ +| ++.|.|+. |..++..+
T Consensus 351 ~~~--~---~~~~~~~~~w~aLalga~lGGn~tliGS~Anvi~~~~~~~----~~---~~~~~~~~-~~~~~~~~ 412 (424)
T PLN00137 351 MYD--L---TDYPMDSELWQLIALCAGTGGSLLVIGSAAGVAFMGMEKV----DF---FWYLRKVS-GFAFAGYV 412 (424)
T ss_pred hhh--h---ccCCcchHHHHHHHHHhCccchHHHHHHHHHHHHHHHhhh----hh---hhhhhhhh-HHHHHHHH
Confidence 654 1 1211 24689999999999999999999999999997543 45 45566653 33333333
No 8
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=100.00 E-value=7.4e-49 Score=421.92 Aligned_cols=405 Identities=21% Similarity=0.298 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHH--hcCChhHHHHHHHHHHHHHHHHHhcHHHH
Q 009002 10 VLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAY--AAIDLPILGLLFGTMVVSVYLESADMFKY 87 (547)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~--~~~~~~~i~~l~~~~il~~~l~~sG~~~~ 87 (547)
+.++.+++.+++++++++. |.+.++.++.++.++.++|+++++|+. .+++|+++++++|+|+++++++++|+++|
T Consensus 2 ~~~l~i~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~~~~l~~~~g~~ii~~~l~~tGl~~~ 78 (429)
T TIGR00935 2 ILAGAIFLLTYVLVIWQPV---GLTIGASASSGAALAILAGVVSRPDIPTVWGIVWNATATFFAVIIISLILDETGFFEW 78 (429)
T ss_pred HHHHHHHHHHHHHHHheec---chHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhchhHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3567888888888888754 344446667777888899999999874 35999999999999999999999999999
Q ss_pred HHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccc
Q 009002 88 LGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQN 166 (547)
Q Consensus 88 ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~N 166 (547)
+++++.++.+ +++++++.+++.++++|+|+||+++++++.|++.++|++.|.+|.++++++++++|+||.+||+|+|+|
T Consensus 79 ia~~l~~~~~~~~~~l~~~~~~~~~~ls~~~~n~~~~~i~~Pi~~~l~~~~~~~~~~~~~~~~~~a~~gg~~t~iG~~~n 158 (429)
T TIGR00935 79 AAVHAYRLSNGRGWLLFTFICLLGAVVSAFFANDGAALILTPIVIAMCEVLGFNPRTILAFVVAAGFIADTASLPLIVSN 158 (429)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHHHhCCCCcchHHHHHHHHHHhhHHhcCCCCch
Confidence 9999988766 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeec---CCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccc
Q 009002 167 LVIAVQ---SKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLN 243 (547)
Q Consensus 167 liv~~~---~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~ 243 (547)
++..+. .+++|.||++.++|+.++++++...++++.+|+.++++.+ . |+
T Consensus 159 ~i~~~~~~~~~i~f~~f~~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~-----~----~~------------------- 210 (429)
T TIGR00935 159 LVNIVSADYFGLGFAEYTSHMLPGNILVLVATLLVLRLYFRNDIPKVYD-----L----EL------------------- 210 (429)
T ss_pred hhhhhcccccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCcccc-----h----hh-------------------
Confidence 988753 3799999999999999988776544433333322221000 0 00
Q ss_pred cccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCccccc
Q 009002 244 SQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGS 323 (547)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (547)
.. +++.
T Consensus 211 ----------------------------~~------------------------------------~~~~---------- 216 (429)
T TIGR00935 211 ----------------------------LL------------------------------------APKY---------- 216 (429)
T ss_pred ----------------------------cc------------------------------------Cccc----------
Confidence 00 0000
Q ss_pred chhhhhHHHhhccccccccchhhHHHHHHHHHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHH----hcCCChHHHHhh
Q 009002 324 VITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYL--ITLGMLVSLLMGLNMSWTAITAALALVV----LDFKDARPSLEK 397 (547)
Q Consensus 324 gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~i~~~~~gi~~~~~al~~a~~l~~----~~~~~~~~~~~~ 397 (547)
..+.|+...+.+.++ .++........+++....++.+++..+. .++.+.||+.++
T Consensus 217 -------------------~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~ 277 (429)
T TIGR00935 217 -------------------AIKDPALFKKCWIVLVFLLVGFFVLEFLGIPVSAIAWIAALGAIALAILADAIDTEKVLRG 277 (429)
T ss_pred -------------------cccCHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 000011111222211 1112222223456666666655544322 467788999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH--h
Q 009002 398 VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAA--I 475 (547)
Q Consensus 398 idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~--~ 475 (547)
+||+++++++|+|++++++++||+.+++++.+....+.+.......+..++.++||++||+| .+.|+ ....++ +
T Consensus 278 i~w~~l~~~~g~f~l~~~l~~tG~~~~la~~~~~~~~~~~~~~~~~~~~~~~~ls~~~sN~~---~~~pi-~~~i~~~~~ 353 (429)
T TIGR00935 278 APWQIVLFSAGMYLVVEGLKNLGLTEYLGGILNVLEDRGLWAAILGTGFVSAFLSSIMNNMP---TMLVG-ALSIDQSSA 353 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHccHH---HHHHH-HHHHhhccc
Confidence 99999999999999999999999999999965433222222223345678889999999999 36784 344443 3
Q ss_pred hcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 476 SAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
.|.+|...++.++++++.|||+||+||++|+++++.+++ +||+++|+||+|+|+|.++++++++...
T Consensus 354 ~g~~~~~~~~~l~~~~~~gg~~tp~gs~anli~~~~~~~---~g~~~~~~df~k~g~~~~~~~~~i~~~~ 420 (429)
T TIGR00935 354 TGLPKEPMVYANVIGADLGPKITPIGSLATLLWLHVLEQ---KGYKISWGYYFRTGIPMTIPVLFVTLAY 420 (429)
T ss_pred cccchhHHHHHHHHHHhcCcccCccccHHHHHHHHHHHH---CCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466766677888999999999999999999999988775 6888899999999999999999887653
No 9
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=100.00 E-value=3.5e-49 Score=420.38 Aligned_cols=357 Identities=20% Similarity=0.276 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHH---H---hcCC-hhHHHHHHHHHHHHHHHHHhcHH
Q 009002 13 SIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQA---Y---AAID-LPILGLLFGTMVVSVYLESADMF 85 (547)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a---~---~~~~-~~~i~~l~~~~il~~~l~~sG~~ 85 (547)
+.+|.++|.+++++.. +.++|+.++++|+.+++++|..+.+|+ + +..| ++++++++|||++++.++++|++
T Consensus 7 ~~if~~~y~~i~~e~~--~~~~r~~~al~ga~~~~~~~~~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~f 84 (420)
T TIGR00775 7 CLLFLFGYLTIVFEHI--VRVNKSAIWLAMGGLMWLVCFSHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHKGF 84 (420)
T ss_pred HHHHHHHHHHHHhcch--hhhccHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCcH
Confidence 5778899999999843 557799999999999999999999997 5 6678 99999999999999999999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHH--HHHHHhhhccccccCc
Q 009002 86 KYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLA--LASSANIGSSATPIGN 163 (547)
Q Consensus 86 ~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~--~a~aa~~Gg~~TpiG~ 163 (547)
|+++.++.++++ +++++.++++++++|+|+|||+|+++++|+++.+|+ .+|.|++++ ++++||+||++|||||
T Consensus 85 ~~la~~l~~~s~--r~Ll~~l~l~t~~lSa~LdN~tt~ll~~Pv~l~i~~---~~~~~~ll~~~i~~AANiGG~~TpIGd 159 (420)
T TIGR00775 85 SALVAWCVGKSR--KKLLWLLGFLSFFLSAALDNLTSIIIIISILKRLVK---AREDRLLLGAICVIAVNAGGAWTPLGD 159 (420)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---cCCccchHHhHHHHhcccccceeeCCC
Confidence 999998876554 899999999999999999999999999999999995 788888888 8999999999999999
Q ss_pred ccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccc
Q 009002 164 PQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLN 243 (547)
Q Consensus 164 p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~ 243 (547)
|||+++++.+|++|.||+....|+.++++++...++.+ ..|++...+ . +++ .
T Consensus 160 P~Ni~i~~~~~i~f~~f~~~l~~p~li~l~v~~~il~~----~~~~~~~~~-----~--~~~---~-------------- 211 (420)
T TIGR00775 160 VTTTMLWINGKIRFSGIIMPLFVPSLVCVVVAGFCGQL----FLPKRKPNT-----I--HED---V-------------- 211 (420)
T ss_pred cchhHhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccccccc-----c--ccc---c--------------
Confidence 99999999889999988888777777776554333332 233211000 0 000 0
Q ss_pred cccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCccccc
Q 009002 244 SQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGS 323 (547)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (547)
+. ++
T Consensus 212 ---------------------------~~--------------------------------------~~----------- 215 (420)
T TIGR00775 212 ---------------------------EL--------------------------------------KR----------- 215 (420)
T ss_pred ---------------------------cc--------------------------------------cc-----------
Confidence 00 00
Q ss_pred chhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc------------CCCh
Q 009002 324 VITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLD------------FKDA 391 (547)
Q Consensus 324 gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~------------~~~~ 391 (547)
...++++... .....++..+......++|+.++++.++.++++++ ..+.
T Consensus 216 ------------------~~~~~~~~l~-l~~~~~l~~f~~~~~~~l~~~~~al~~~~~lll~~~~l~~~~~~~~~~~~~ 276 (420)
T TIGR00775 216 ------------------ALPKSRRIVL-LGVGSLLMVPSWKAVLGFPPFMGALLGLGLVWLFSDWIHSPHGEKRLHLRV 276 (420)
T ss_pred ------------------chhhhHHHHH-HHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHhhccccccccccCH
Confidence 0001122221 11111222333334467999999999998777654 3456
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009002 392 RPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAAS 471 (547)
Q Consensus 392 ~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~ 471 (547)
+|+++++||++++||+|+|+++++++++|..+.+++.+.+..+ . . ...+++.++||++||+|+++.+.|....
T Consensus 277 ~~~l~~VDw~tLlfF~GlFilvg~l~~~G~l~~la~~l~~~~~--~-~---~~~~~s~i~S~~IdNVP~va~~i~l~~~- 349 (420)
T TIGR00775 277 PHILTRIDISSLTFFIGILLAVNALSLLGYLEDVSNVMDTQFS--R-N---WAAVMVGLLSSVLDNVPLVAATLGMYPL- 349 (420)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC--c-c---hHHHHHHHHHHHhccHHHHHHHHHhccc-
Confidence 8999999999999999999999999999999999998854322 1 1 1145577899999999999999995311
Q ss_pred HHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhcc
Q 009002 472 AAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQA 512 (547)
Q Consensus 472 ~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~ 512 (547)
+. .+..|+.+++++|+|||+|+|||.||+++++..
T Consensus 350 -----~~-~~~~w~aLalga~lGGn~tlIGS~Anvv~~~~~ 384 (420)
T TIGR00775 350 -----PM-SDGLWKLIAYTAGTGGSILIIGSAAGVALMGAE 384 (420)
T ss_pred -----cC-chHHHHHHHHHHCccchhHHHHHHHHHHHHHHH
Confidence 11 246899999999999999999999999988864
No 10
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=100.00 E-value=1.8e-48 Score=413.11 Aligned_cols=375 Identities=44% Similarity=0.616 Sum_probs=295.9
Q ss_pred CCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHH
Q 009002 29 PFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICL 108 (547)
Q Consensus 29 ~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~ 108 (547)
+....+.++++++++.++.++|+++++|++++++|+++++++|+|+++.+++++|+++++++++.++.++++++.+.+++
T Consensus 7 ~~~~~~~~~~a~~~~~ll~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~~~~~l~~~~~~ 86 (384)
T cd01117 7 PGLRLDRWAIALLGAALMLLFGVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAGSPRRLLFLLVL 86 (384)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33444456889999999999999999999999999999999999999999999999999999988776677888889999
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHH
Q 009002 109 ISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAM 188 (547)
Q Consensus 109 ~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~ 188 (547)
+++++|++++|+++++++.|++.++|++.|.+|.++++++++++|+||++||+|||+|+++++..+++|.||++.++|+.
T Consensus 87 ~~~~ls~~~~n~~~~~~~~Pi~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~~~~~~~~~~p~~ 166 (384)
T cd01117 87 LSGILSALLTNDTACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGISFPFFLAAMAPLA 166 (384)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcCCCCCHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCch
Q 009002 189 FVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSH 268 (547)
Q Consensus 189 iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (547)
++++++...+.+.++++..+++++. ++ +
T Consensus 167 i~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------------~------------------------ 194 (384)
T cd01117 167 LLGLLLLLILLLVLFPGELKGLPLD----KA------------------------T------------------------ 194 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccc----cc------------------------c------------------------
Confidence 8887765444443333222100000 00 0
Q ss_pred hhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHH
Q 009002 269 AETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKR 348 (547)
Q Consensus 269 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~ 348 (547)
+ +.+ + ..++.++
T Consensus 195 ----~-------------------------------------~~~-----------------------~----~~~~~~~ 206 (384)
T cd01117 195 ----K-------------------------------------EEG-----------------------V----GARKLAV 206 (384)
T ss_pred ----c-------------------------------------hhh-----------------------c----ccHHHHH
Confidence 0 000 0 0001111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 009002 349 VLRKSCVYLITLGMLVSLLMGL-NMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWE 427 (547)
Q Consensus 349 ~~~~~~~~~i~~~~i~~~~~gi-~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~ 427 (547)
. ....+++.........+. |..++++.++.+++..+ .+.+|+++++||+++++|+|+|.++++++++|..+++++
T Consensus 207 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~l~~i~w~~ll~f~g~f~l~~~l~~~g~~~~~~~ 282 (384)
T cd01117 207 K---LLVLILLLLVAFLALLGVIPLWTAALVAAVLLLLTR-LKPRRVLKKVDWGLLLFFAGLFILVGGFAQGLPLEGLSR 282 (384)
T ss_pred H---HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-CCHHHHHHhCCchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1 111111111111222344 55556666777777777 888999999999999999999999999999999999888
Q ss_pred HhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHH
Q 009002 428 FMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLI 507 (547)
Q Consensus 428 ~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNli 507 (547)
.+.. ......+++++.++|||+||+|+++++.|+. ... + +..|+.+++++++|||+||+||++|++
T Consensus 283 ~~~~------~~~~~~~~~~~~~lS~~isN~p~~~~~~pi~-~~~------~-~~~~~~l~~~~~~gg~~tpigs~an~i 348 (384)
T cd01117 283 LLPL------LDSVLSLFLVSIGLSQLISNVPAVLLLLPFL-PSA------D-EKDWLLLAAGSTIAGNLTLLGSAANLI 348 (384)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-Hhc------c-cHHHHHHHHHhhcccccchhhHHHHHH
Confidence 7643 1233456788999999999999999999953 221 2 347788999999999999999999999
Q ss_pred HHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 508 VCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 508 v~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
+++..|+ +|++++|+||+|+|+|.+++.++++.+
T Consensus 349 ~~~~~~~---~g~~~~~~~~~k~g~~~~i~~~~~~~~ 382 (384)
T cd01117 349 VAEAAER---RGVRLSFGEFLKYGVPLTLLTAAIGIL 382 (384)
T ss_pred HHHHHHH---CCCCCcHHHHHHHhhHHHHHHHHHHHH
Confidence 9998877 466789999999999999999887764
No 11
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=100.00 E-value=7.5e-48 Score=409.02 Aligned_cols=370 Identities=18% Similarity=0.223 Sum_probs=278.3
Q ss_pred HHHccCChHHHHhcC--ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHH
Q 009002 47 VIFQVITPDQAYAAI--DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCV 124 (547)
Q Consensus 47 ~l~gv~~~~~a~~~~--~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~ 124 (547)
+++|+++++|+++++ |+++++++++| ++++++++|++++++.++.++.++++++++.+++.++++|+|+||+++++
T Consensus 76 v~~Gv~s~~~a~~~f~~n~~vIlLL~fM--Vv~i~~~~gll~~v~~kil~~~~s~~~Lll~~~l~aA~LSAFLdN~Tvva 153 (513)
T PRK09547 76 VFIGMTSPEHVYHEIAANLEVLLLLMFM--VAGIYFMKQLLLFIFTKLLLSIRSKMLLSLAFCLAAAFLSAFLDALTVIA 153 (513)
T ss_pred HHHCCCCHHHHHHHhccCHHHHHHHHHH--HHHHHHHccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 789999999999995 67777776654 99999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHH-------------------HHHHcCCC---------chH----HHHHHHHHHhhhccccccCcccchheeec
Q 009002 125 VLTEFVLK-------------------IARQHNLP---------PHP----FLLALASSANIGSSATPIGNPQNLVIAVQ 172 (547)
Q Consensus 125 i~~Pi~~~-------------------ia~~~~~~---------p~~----~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~ 172 (547)
+++|++++ +|++.+++ |.| ++|+.++++|+||.+|+||+|||+++.+.
T Consensus 154 v~iPV~l~~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~p~pfL~~Llmpla~asnlGGv~TLIG~PqNLiIas~ 233 (513)
T PRK09547 154 VVISVAVGFYGIYHRVASGKGFSEDHDLTDDSHIDELYREDLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQ 233 (513)
T ss_pred hHHHHHHHHhhhhHHHHhccccccccccccccccchhhhhhhcccchHHHHHHHHHHHHHHhhhheeccCCcHHHHHHHh
Confidence 99999994 45556676 444 45566679999999999999999999998
Q ss_pred CCCChHHHHHhHHHHHHHHHHHHHHHHHHHHH--hhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhh
Q 009002 173 SKIPFGKFLIGILPAMFVGVAVNALILLTMYW--KLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSR 250 (547)
Q Consensus 173 ~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~--~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~ 250 (547)
.|++|.||+....|+.+..+++.+.+.+++-+ ++..+++.++ ..++.
T Consensus 234 ~g~~F~~F~~~~apv~lpvli~gll~~~l~~~~~~f~y~~~l~~-~~~~~------------------------------ 282 (513)
T PRK09547 234 AGWHFGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFGYGAKLPE-KVRQV------------------------------ 282 (513)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEeeccccch-hHHHH------------------------------
Confidence 89999999777777666555544433322111 1111100000 00000
Q ss_pred hhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhH
Q 009002 251 LESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNV 330 (547)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~ 330 (547)
+.+. ++
T Consensus 283 ---------------------l~~~----------------------------------~~------------------- 288 (513)
T PRK09547 283 ---------------------LQDY----------------------------------DD------------------- 288 (513)
T ss_pred ---------------------hhhh----------------------------------hh-------------------
Confidence 0000 00
Q ss_pred HHhhccccccccchhhHHHH-HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc---CCChHHHHhh-----cChh
Q 009002 331 LLRQLSRGKESLSSEWKRVL-RKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLD---FKDARPSLEK-----VSYS 401 (547)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~---~~~~~~~~~~-----idw~ 401 (547)
+.++++..++|+++ .+++.++. .+++.. +++++++++|+.++++.+ ..+.++.+++ +||+
T Consensus 289 ------~~~~~~~~~d~~~L~~~~l~~~~---li~~f~--l~~a~VaLiga~vill~~~~~~~~~e~~l~~~~~~~v~w~ 357 (513)
T PRK09547 289 ------QERAKRTRQDKAKLIVQALIGVW---LIVALA--LHLAEVGLIGLSVIILATAFTGVTDEHAIGKAFEEALPFT 357 (513)
T ss_pred ------ccCcccccccHHHHHHHHHHHHH---HHHHHH--HhHHHHHHHHHHHHHHhhcccCCCHHHHHhhCcCCCCChH
Confidence 00000011123333 44543221 222222 788999999998877765 5778899999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC-C-
Q 009002 402 LLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAA-D- 479 (547)
Q Consensus 402 ~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~-~- 479 (547)
++ |+|+|+++++++++|+.+.+++++.+..+.++ ...+++.+.++|+++||+|+++.|.|.+. ..+ ..|. +
T Consensus 358 tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~~---~~~~~~~sgllSaiiDNVp~~~~~ip~v~-~~~-~~g~~~~ 430 (513)
T PRK09547 358 AL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHAQ---LSLFYIANGLLSSISDNVFVGTVYINEAK-AAL-ESGAISR 430 (513)
T ss_pred HH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHhhchHHHHHHHHHHHH-HHH-hcCCCcc
Confidence 99 99999999999999999999999977644222 55677889999999999999999999654 333 3344 1
Q ss_pred --chHHHHHHHHHHHhhcChhhhhhhhhHHHH-hccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 480 --EKKAWLILAWVSTVAGNLSLVGSAANLIVC-EQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 480 --~~~~~~~l~~~~~~gg~~TpiGs~aNliv~-~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
.+..||.++.|+|+|||+||+|+.||+++. +.++ | |||++|+||+|+|+|.|+++.+++...
T Consensus 431 ~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~~~~~---~-g~~isf~~~~k~glP~tlv~~~v~~~~ 495 (513)
T PRK09547 431 KQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALA---P-LIRLSYGRMVWMALPYTIVLTLVGLLA 495 (513)
T ss_pred ccchHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHh---C-CCcccHHHHHHHhHHHHHHHHHHHHHH
Confidence 246899999999999999999999999999 7764 4 999999999999999999999988754
No 12
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=100.00 E-value=1.4e-45 Score=394.47 Aligned_cols=399 Identities=27% Similarity=0.458 Sum_probs=313.5
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCC----hHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 009002 17 AIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVIT----PDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRML 92 (547)
Q Consensus 17 ~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~----~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i 92 (547)
+.++++++++++ |.+ ++++++..+++++|+.+ ++|++++++|+++++++|++.++.+++++|+.|++++++
T Consensus 2 ~~~~~~~~~~~~---p~~--~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~tG~~~~la~~~ 76 (413)
T cd01116 2 IITYALIIFEKV---HRT--VAALAGALWLVILGLATLSPDLETIVSWVDWETLALLLGMMIIVSILSETGVFEYLAIWA 76 (413)
T ss_pred hHHHHHHHHccc---cHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 456666676653 554 77899999999999999 999999999999999999999999999999999999999
Q ss_pred HhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheee
Q 009002 93 SWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAV 171 (547)
Q Consensus 93 ~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~ 171 (547)
.++.+ +++++++.++++++++|+|++|+++++++.|++..+|++.|.+|..+++.+.+++|+||..||+|+|+|+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~pi~~~i~~~~g~~~~~~~~~~~~~a~~g~~~tp~g~~~n~~~~~ 156 (413)
T cd01116 77 VKISKGRPWRLLLLLGLLTAFLSAFLDNVTTVLLMVPVTIRLCEVLGLNPVPVLISEVIAANIGGAATLIGDPPNIMIGS 156 (413)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHccchhhccCCchhhhhhc
Confidence 87755 56778888899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhh
Q 009002 172 QSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRL 251 (547)
Q Consensus 172 ~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~ 251 (547)
..+++|.||++.++|..++++++..+..++.+++..++ .+ +. +++.
T Consensus 157 ~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~---~~----~~--~~~~------------------------- 202 (413)
T cd01116 157 AAGLTFNDFLLHMLPSVVLALVVTFILLYFLYRNILKA---RE----ED--VLAL------------------------- 202 (413)
T ss_pred cCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---cc----hh--HHHh-------------------------
Confidence 88899999999999998887776444333333322110 00 00 0000
Q ss_pred hhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHH
Q 009002 252 ESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVL 331 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~ 331 (547)
++.+ +.
T Consensus 203 ------------------~~~~-------------------------------------~~------------------- 208 (413)
T cd01116 203 ------------------AELE-------------------------------------PK------------------- 208 (413)
T ss_pred ------------------hccc-------------------------------------cc-------------------
Confidence 0000 00
Q ss_pred HhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHhcCC-ChHHHHhhcChhHHHHH
Q 009002 332 LRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLL----MGLNMSWTAITAALALVVLDFK-DARPSLEKVSYSLLIFF 406 (547)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~----~gi~~~~~al~~a~~l~~~~~~-~~~~~~~~idw~~ll~f 406 (547)
...++++....... ++...+.... .+++..+++++++.++...+.. +.+|+++++||++++++
T Consensus 209 ----------~~~~~~~~~~~~~~--i~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~ 276 (413)
T cd01116 209 ----------YPIKDKVLLLKSLT--ILTLVIIGFVLHSPLGVSLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFF 276 (413)
T ss_pred ----------cccCcHHHHHHHHH--HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHH
Confidence 00011111111211 1112222222 2457888999999888888877 89999999999999999
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 009002 407 CGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLI 486 (547)
Q Consensus 407 ~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~ 486 (547)
+|+++++.+++++|..|++++.+.+..+.+.......+.+++.++|+|+||+|+++++.| +....++..+.+|...++.
T Consensus 277 ~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~s~f~sn~~~~~~~~p-i~~~~~~~~~~~~~~~~~~ 355 (413)
T cd01116 277 AGLFVLVGGLEELGIIEWIAELLVGVILGRIAVAVILILWISALLSAFIDNIPVTATMIP-IVKDLASQLGIPLLPLWWA 355 (413)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHhcCCCchHHHHH
Confidence 999999999999999999999997765433333334556788999999999999999999 5677787788888777778
Q ss_pred HHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 487 LAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 487 l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
.+++++.||++||+|+++|+++++..++ +|++++|+||+|+|.|.+++..+++..
T Consensus 356 ~~~~a~~g~~~tp~gs~~n~i~~~~~~~---~g~~~~~~~~~~~g~~~~i~~~~~~~~ 410 (413)
T cd01116 356 LALGACLGGNGTLIGASANVVAAGIAEQ---HGYKISFWEFLKVGFPIMLVSLILATV 410 (413)
T ss_pred HHHHHhcccccccccchHHHHHHHHHHH---cCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999987654 355568999999999999998877654
No 13
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=100.00 E-value=1.9e-42 Score=373.86 Aligned_cols=404 Identities=20% Similarity=0.197 Sum_probs=303.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHH-HHHHHHHccCC---hHHHHhcCChhHHHHHHHHHHHHHHHHHh
Q 009002 7 VKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLG-AMLMVIFQVIT---PDQAYAAIDLPILGLLFGTMVVSVYLESA 82 (547)
Q Consensus 7 ~k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~-~~~l~l~gv~~---~~~a~~~~~~~~i~~l~~~~il~~~l~~s 82 (547)
.|..+.+.+++.+.++++++. +|. .++++++ .+++.++|+++ ++|++++++|+++++++|+|+++.+++++
T Consensus 8 ~~~~~~l~i~~~~i~~w~~~~---~~~--~~~a~~~~~~~l~l~g~~~~~~~~~~~~~~~~~~v~l~~~~~~i~~al~~t 82 (444)
T TIGR00785 8 SGAWLLLAIFVAAIVGWILEP---LPL--PVTALLAIPIIAVLLGVLSAFKFKNALSGFADPTIWLFFGAFILATALVKT 82 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CcH--HHHHHHHHHHHHHHhccCCcchHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 344455556666666666553 344 4778886 88889999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCC-c-hhHHHHHHHHHHHHhhhchhhH-HHHHHHHHHHHHHHHcCCCc--------hHHHHHHHHH
Q 009002 83 DMFKYLGRMLSWKSRG-P-KDLLCRICLISAISSALFTNDT-SCVVLTEFVLKIARQHNLPP--------HPFLLALASS 151 (547)
Q Consensus 83 G~~~~ia~~i~~~~~~-~-~~ll~~i~~~~~~lS~flsN~~-~v~i~~Pi~~~ia~~~~~~p--------~~~l~~~a~a 151 (547)
|+.+|+++++.++.++ + +..+..+++.+.+.|.|.||++ +++++.|++.++|++.|.+| ..+++++.++
T Consensus 83 Gl~~~ia~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~sn~ar~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~l~~~~~~~ 162 (444)
T TIGR00785 83 GLGKRIAYKLVGKMGGTTLGLGYFLVFLETLLAPMWPSNTARAGGILLPIIKSLLPLLGSKPEKSPRKIGKYLMLGIAYS 162 (444)
T ss_pred CchHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhCchHhHhHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHH
Confidence 9999999999887654 4 4555567777888899999999 99999999999999999998 4567899999
Q ss_pred HhhhccccccCcccchheeecC------CCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhc
Q 009002 152 ANIGSSATPIGNPQNLVIAVQS------KIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEED 225 (547)
Q Consensus 152 a~~Gg~~TpiG~p~Nliv~~~~------~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~ 225 (547)
+|+||++||+|+|+|+++.+.. +++|.||++.+.|..++++++...+.+.+ .|++.++++..++. .+
T Consensus 163 a~~g~~~t~~g~~~n~i~~~~~~~~~g~~i~~~~~~~~~~p~~ii~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~-- 235 (444)
T TIGR00785 163 ASIGSSGFLTGSAPNALAAGILSKILGIQISWGDWFLAGLPLGIILLLLVPLLLYVL----FPPELKLKDEVDLW-AK-- 235 (444)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHH----cCccccCCccHHHH-HH--
Confidence 9999999999999999987543 28999999999998888776644433333 33211100000000 00
Q ss_pred ccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccc
Q 009002 226 VTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVST 305 (547)
Q Consensus 226 v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (547)
++.++
T Consensus 236 --------------------------------------------~~~~~------------------------------- 240 (444)
T TIGR00785 236 --------------------------------------------EELEE------------------------------- 240 (444)
T ss_pred --------------------------------------------HHHHH-------------------------------
Confidence 00000
Q ss_pred cCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHH----HhCCcHHHHHHHHHH
Q 009002 306 DGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSL----LMGLNMSWTAITAAL 381 (547)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~----~~gi~~~~~al~~a~ 381 (547)
.+ + ...+.++ .+ .++...++.. ..++|.+++++.+++
T Consensus 241 ------~~------------------------~---~~~~e~~----~l--~v~~~~i~~~~~~~~~~~~~~~~al~~~~ 281 (444)
T TIGR00785 241 ------MG------------------------P---MSFREKA----LL--GIFLLALLLWIFGGSLGINASVVALLAVV 281 (444)
T ss_pred ------cC------------------------C---CCHHHHH----HH--HHHHHHHHHHHcCCCCCCChHHHHHHHHH
Confidence 00 0 0011111 11 1112222222 235799999999999
Q ss_pred HHHHhcCCChHHHHhh-cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcch-hh-HHHHHHHHHHHHHHhhchH
Q 009002 382 ALVVLDFKDARPSLEK-VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDH-VG-GIAVLAAVILVLSNLASNV 458 (547)
Q Consensus 382 ~l~~~~~~~~~~~~~~-idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~-~~-~~~~l~~v~~~lS~~isN~ 458 (547)
++++.+..+.||..++ +||+++++++|.+.++.+++++|+.+++++++.+..+... .. ....+.+.+.++++++||+
T Consensus 282 ll~~~g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~sG~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~ 361 (444)
T TIGR00785 282 LMLFLGIVTWKDIQKNKVAWNTLILFGGLIGLAGGLKKSGFIKWFSEKLVGILDGLSPTIAVLVLVVLFYIILYFFASNT 361 (444)
T ss_pred HHHHhCcccHHHHhhccCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9988999999998886 9999999999999999999999999999999976642211 11 1234456778899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHH
Q 009002 459 PTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIV 538 (547)
Q Consensus 459 p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~ 538 (547)
+++.++.| +....+++.|.||...++..+++++.+|++||+|+++|.++++. +++ +++||+|.|+|++++.
T Consensus 362 ~~~~i~~P-i~~~ia~~~G~~p~~~~~~~~~~~~~~~~~tP~~s~~n~i~~~~------g~~--~~~~~~k~~~p~~l~~ 432 (444)
T TIGR00785 362 AHTAALVP-IFFSVASAQGIPLELLALALALSASLMGFLTPYATPPNAIAYGS------GYV--KIKDMWRVGAIIGIVG 432 (444)
T ss_pred HHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCccceeecC------CCc--cHHHHHHhHHHHHHHH
Confidence 99999999 55677777899887666767788888899999999999998772 445 6999999999999999
Q ss_pred HHHHhhh
Q 009002 539 TAIGLPL 545 (547)
Q Consensus 539 ~iv~~~~ 545 (547)
+++..++
T Consensus 433 ~~~~~~~ 439 (444)
T TIGR00785 433 LIVLLLV 439 (444)
T ss_pred HHHHHHH
Confidence 8876553
No 14
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=100.00 E-value=4.3e-40 Score=349.93 Aligned_cols=385 Identities=36% Similarity=0.487 Sum_probs=292.4
Q ss_pred CCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCC-chhHHHHHH
Q 009002 29 PFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRG-PKDLLCRIC 107 (547)
Q Consensus 29 ~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~-~~~ll~~i~ 107 (547)
+.+|.+ .+++++..++.++|+.+++|++++++|+++++++|+++++.+++++|+.+++++++.+..++ ++. ...++
T Consensus 7 ~~~~~~--~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~~-~~~~~ 83 (396)
T cd00625 7 EKLPRA--VVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRRL-LLLLM 83 (396)
T ss_pred CcCCHH--HHHHHHHHHHHHhcCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCchH-HHHHH
Confidence 344554 77899999999999999999999999999999999999999999999999999999776554 444 66777
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHH
Q 009002 108 LISAISSALFTNDTSCVVLTEFVLKIARQHNLPP-HPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILP 186 (547)
Q Consensus 108 ~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p-~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (547)
..++++|+|++|++++.++.|++.+++++.|.+| ..+.+++++++++||+.||+|+|+|+++.+..++++.||++.+.|
T Consensus 84 ~~~~~ls~~~s~~~~~~il~Pi~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~~~~~~~~~~~ 163 (396)
T cd00625 84 LLTAALSAFFSNDATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLGFLDFLAFMAP 163 (396)
T ss_pred HHHHHHHHHHhchhhhhhhHHHHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeCCCCCHHHHHHHHhH
Confidence 8889999999999999999999999999999999 899999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCC
Q 009002 187 AMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNG 266 (547)
Q Consensus 187 ~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 266 (547)
..++..+....+.++++++...+.+ + .+++ +
T Consensus 164 ~~i~~~~~~~~~~~~~~~~~~~~~~-~---~~~~----~----------------------------------------- 194 (396)
T cd00625 164 PALGLLLLLLGLLYLLFRKKLLLPD-E---DKLT----V----------------------------------------- 194 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch-h---hhhh----h-----------------------------------------
Confidence 9988877666555555543321110 0 0000 0
Q ss_pred chhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhh
Q 009002 267 SHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEW 346 (547)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~ 346 (547)
.++ +.+ + ..+.++
T Consensus 195 -----~~~-----------------------------------~~~------------------------~---~~~~~~ 207 (396)
T cd00625 195 -----LAE-----------------------------------PLP------------------------A---RPLLKK 207 (396)
T ss_pred -----hhc-----------------------------------cCh------------------------h---cccccH
Confidence 000 000 0 000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcC--CChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHH
Q 009002 347 KRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDF--KDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSA 424 (547)
Q Consensus 347 ~~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~~--~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ 424 (547)
+. ...+... ..++......++..+.+..+++++++... .+.+|+++++||+++++++|.++++.+++++|+.++
T Consensus 208 ~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~w~~~~~~~~~~~l~~~l~~~G~~~~ 283 (396)
T cd00625 208 FL--LLALLLL--LLFVLLFFFLIPLGLIALLGALLLLLLLVRGLDPEEVLKSVDWGTLLFFAGLFVLVGALESTGLLEW 283 (396)
T ss_pred HH--HHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 11 1111111 11111111125666667666665554443 588999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhh
Q 009002 425 LWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAA 504 (547)
Q Consensus 425 ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~a 504 (547)
+++.+.+..+.++......+..++.++|+|+||+|++.++.|++ ...+ ++...+...+...+.++++|++||.+
T Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~n~~~~~~~~Pi~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~a 357 (396)
T cd00625 284 LAELLVALVGLPPLAALLLIGLLSALLSNFISNVPTVALLLPIA-ASLA-----PPEPAWLALALGSTLGGNLTLIGSLA 357 (396)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhc-----CchHHHHHHHHHhcccccccccccHH
Confidence 99999766432333334455678889999999999999999954 3332 23345667788889999999999999
Q ss_pred hHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 505 NLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 505 Nliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
|++.++..++. +++++|+||+|+|+|.+++..+++...
T Consensus 358 ~~l~~~~~~~~---~~~~~~~~~~k~g~~~~~~~~~~~~~~ 395 (396)
T cd00625 358 NLIPLGAAENA---GVGISFGEFLKVGLPLTLLSLVVSLLY 395 (396)
T ss_pred HHHHHHHHHHC---CCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987653 234579999999999999999988765
No 15
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=100.00 E-value=2.7e-40 Score=342.64 Aligned_cols=374 Identities=16% Similarity=0.208 Sum_probs=260.7
Q ss_pred HHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHH
Q 009002 46 MVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLG-RMLSWKSRGPKDLLCRICLISAISSALFTNDTSCV 124 (547)
Q Consensus 46 l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia-~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~ 124 (547)
-+++|+.+++++++.+.++.++++++||+++.+++++|+.++++ +.+.+. +++..+.+.+|+.++++|+|+||+++++
T Consensus 75 a~~iG~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll~i-~Sk~~L~l~f~laaafLSaFLsnttvtA 153 (515)
T TIGR00774 75 AIAIGMTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGI-RSKTLLSLAFCFAAAFLSAFLDALTVVA 153 (515)
T ss_pred HHHHCCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35789999999999999999999999999999999999999999 666666 6888999999999999999999999999
Q ss_pred HHHHHHHHH------------HHHcCCCchH-------------------HHHHHHHHHhhhccccccCcccchheeecC
Q 009002 125 VLTEFVLKI------------ARQHNLPPHP-------------------FLLALASSANIGSSATPIGNPQNLVIAVQS 173 (547)
Q Consensus 125 i~~Pi~~~i------------a~~~~~~p~~-------------------~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~ 173 (547)
+++|+++.+ +++.+.++.+ ++|+.+++||+||++||+|||||+++++..
T Consensus 154 vmIpVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~ 233 (515)
T TIGR00774 154 VVISVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQA 233 (515)
T ss_pred HHHHHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHh
Confidence 999999999 7777766665 899999999999999999999999999988
Q ss_pred CCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-hhhhhhHHhhhcccccccCCCccccccccccccchhhhh
Q 009002 174 KIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDE-EDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLE 252 (547)
Q Consensus 174 ~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~-~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 252 (547)
+.+|.+|+..+.|..+..++..+.+.++.-+..+-.-... .+..|+...|.+
T Consensus 234 g~~F~~FF~~m~Pv~LP~lIilll~~~l~~~~~~~gyg~~lp~~v~~~l~~~~--------------------------- 286 (515)
T TIGR00774 234 GWLFGEFFLRMSPVTLPVFICGLLTCALVEKLKVFGYGEKLPDNVRQILVDFD--------------------------- 286 (515)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccCCHHHHHHHHHHh---------------------------
Confidence 8888888887777666555443332222211111000000 000011000000
Q ss_pred hhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHH
Q 009002 253 SMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLL 332 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~ 332 (547)
+
T Consensus 287 ----------------------------------------------------------~--------------------- 287 (515)
T TIGR00774 287 ----------------------------------------------------------R--------------------- 287 (515)
T ss_pred ----------------------------------------------------------H---------------------
Confidence 0
Q ss_pred hhccccccccchhhH-HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH----HhcCCCh---HHHHhh-cChhHH
Q 009002 333 RQLSRGKESLSSEWK-RVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALV----VLDFKDA---RPSLEK-VSYSLL 403 (547)
Q Consensus 333 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~----~~~~~~~---~~~~~~-idw~~l 403 (547)
++++++.++.| ++....++..+ .+++.+ ++.+-+.++|..+.+ +.|..|. .+++++ .+..-+
T Consensus 288 ----~~~~~~~~~~~~~l~~q~~~~~~---l~~~la--~h~a~vg~igl~vii~~t~~~g~~~eh~~g~af~ealpftal 358 (515)
T TIGR00774 288 ----EERKTRTNQDKIKLWVQALIAVW---LIVALA--LHLAAVGLIGLSVIILATSFTGVTDEHSIGKAFEESLPFTAL 358 (515)
T ss_pred ----HHHHhcCHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHhHHHHHHHHHHHHhcCCcchhhhhHHHhhhccHHHH
Confidence 00000011112 22222322211 111111 122223333332222 2344443 355553 666554
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC-C---
Q 009002 404 IFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAA-D--- 479 (547)
Q Consensus 404 l~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~-~--- 479 (547)
+-+ .|.++.-..+..+.+-+-++.... ++......+.+.+.++|+++||+|+++.|.|.+... ...|. +
T Consensus 359 l~v--ff~~vavi~~q~lf~p~i~~vl~~---~~~~q~~~ilw~SgilSa~IDNVP~vatmIPvIk~l--~~~G~~~~~~ 431 (515)
T TIGR00774 359 LAV--FFSVVAVIIDQELFSPIIDFVLAA---EEKTQLALFYVFNGLLSSISDNVFVGTVYINEAKAA--LTEGLITREQ 431 (515)
T ss_pred HHH--HHHHHHHHHhhhhhHHHHHHHHcC---CCccchHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HhcCCCcccc
Confidence 433 466777777777777776666432 223345567788999999999999999999966443 23343 1
Q ss_pred chHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 480 EKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 480 ~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
.+..||.++.|+|+|||+||+|+.||+++.+.+++ .|||++|+||+|+|+|.|+++++++...
T Consensus 432 ~~~LWWALALGA~LGGNaTpiGAsANLVv~~iA~k---~G~rISF~~flK~GlP~TLvsliVs~ly 494 (515)
T TIGR00774 432 FELLAVAINTGTNLPSVATPNGQAAFLFLLTSALA---PLIRLSYGRMVYMALPYTIVLAIVGLLG 494 (515)
T ss_pred ccHHHHHHHHhccccccccHHHHHHHHHHHHHHHh---CCCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999887 5999999999999999999999998754
No 16
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=100.00 E-value=1.8e-39 Score=343.78 Aligned_cols=366 Identities=23% Similarity=0.318 Sum_probs=295.5
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 009002 14 IAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLS 93 (547)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~ 93 (547)
.+++.++++++.++ +|. ...++.++.++.++|+.++||++++++|+++++++|++.+++++++||+.||+++++.
T Consensus 2 ~i~~~~i~~w~~~~---~~~--~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~li~g~~~l~~~~~~tG~~~~la~~i~ 76 (382)
T cd01115 2 AILVFAAVLFVTEA---LPL--DVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGAALTRTGLAKRIATKLL 76 (382)
T ss_pred HHHHHHHHHHHHCc---ccH--HHHHHHHHHHHHHhCCCCHHHHHHHcCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 35666667767654 345 4778999999999999999999999999999999999999999999999999999998
Q ss_pred hhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheee-
Q 009002 94 WKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAV- 171 (547)
Q Consensus 94 ~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~- 171 (547)
++.+ +++.+...+++.+.++|+|++|++++.++.|++.++|++.|.+|.++++++.+++|.|+++||+|+|+|.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~Pi~~~~~~~~g~~~~~~~l~~~~~~~~g~~~~p~g~~~n~i~~~~ 156 (382)
T cd01115 77 KRAGKGERRLLLLLMLVTAFLSAFMSNTATVAIMLPVALGLAAKLDISPSRLLMPLAFAASIGGMLTLIGTPPNLVASGY 156 (382)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcccceecCCchHHHHHHH
Confidence 6655 46778888889999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -----cCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCcccccccccccc
Q 009002 172 -----QSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQE 246 (547)
Q Consensus 172 -----~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~ 246 (547)
..++++.||++.+.|..++++++ .++. +..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~--~~~--------------------------------------- 191 (382)
T cd01115 157 LESLGGQGFSFFEFTPIGLPLLIIGLLY----LWFI--FRL--------------------------------------- 191 (382)
T ss_pred HHHccCCCcCHHHHHHHHHHHHHHHHHH----HHHH--HHH---------------------------------------
Confidence 23578999999999887665432 1111 000
Q ss_pred chhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchh
Q 009002 247 WNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVIT 326 (547)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~ 326 (547)
T Consensus 192 -------------------------------------------------------------------------------- 191 (382)
T cd01115 192 -------------------------------------------------------------------------------- 191 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHH
Q 009002 327 LVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLL--MGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLI 404 (547)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~--~gi~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll 404 (547)
. ..+ ..+ ...+.... .+.|..+.++.++.++...+..+.||+.+++||++++
T Consensus 192 ---------------------~---~~~-~~i-~l~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~w~~l~ 245 (382)
T cd01115 192 ---------------------A---VLI-ITI-VLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDYKSIDWGIIF 245 (382)
T ss_pred ---------------------H---HHH-HHH-HHHHHHHHHcCcccHHHHHHHHHHHHHHHccCCHHHHHHcCCchHHH
Confidence 0 000 000 01111111 2368888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHhhhhhhc-chhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHH
Q 009002 405 FFCGMFITVDGFNKTGIPSALWEFMEPYAEI-DHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKA 483 (547)
Q Consensus 405 ~f~glf~l~~al~~tG~~~~ia~~l~~~~~~-~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~ 483 (547)
+++|++.++.+++++|+.|++++.+.+..+. ++......+..++.++|+++||++++.++.| +....++..|.||...
T Consensus 246 ~~~~~~~l~~~l~~~Gl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ls~~~sn~~~~~i~~P-i~~~~~~~~g~~p~~~ 324 (382)
T cd01115 246 LFAGGIPLGKALESSGAAALIAEALISLLGGLPPFAILLLLCLLTLVLTNFISNTATAVLLAP-IALSIALSLGLPPEAL 324 (382)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHcCCChHHH
Confidence 9999999999999999999999999764332 2222334556788899999999999999999 5577778889888655
Q ss_pred HHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 484 WLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 484 ~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
++..+++++. +++||+|+++|+++++. +++ +|+||+|.|+|.++++++++...
T Consensus 325 ~~~~~~~~~~-~~~tp~~~~~n~i~~~~------~~i--~~~~~~~~~~p~~i~~~~~~~~~ 377 (382)
T cd01115 325 LLAVAIGASC-AFMLPVGTPPNAIVLGP------GGY--KFSDFAKVGLPLSILSLVVSVTM 377 (382)
T ss_pred HHHHHHHHHH-HHcCccCCCCCeeeeCC------CCc--cHHHHHHhCHHHHHHHHHHHHHH
Confidence 5555555554 79999999999998873 444 79999999999999999887654
No 17
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=343.79 Aligned_cols=381 Identities=23% Similarity=0.281 Sum_probs=299.1
Q ss_pred HHHHHHHHHHHHHHHcc----CChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHHHHH
Q 009002 35 RTAGSLLGAMLMVIFQV----ITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRICLI 109 (547)
Q Consensus 35 ~~~~al~~~~~l~l~gv----~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~ 109 (547)
+.+.+++...+.++.+. .++++++..++|+++++++++|.++.+++++|+.+++|.++.+..+ +|+.+...++++
T Consensus 51 ~~~~~ll~~~~~~l~~~~~~~~~~~~~l~~~~~~~I~l~~~~f~~s~~~~~~gl~~~la~~~l~~~~~~p~~l~~~l~~~ 130 (461)
T COG0471 51 LFALAILVIVLLVLSGFILAISASKLALSGFANSTIWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLALGLVLL 130 (461)
T ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHhhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 34778888899999998 8899999999999999999999999999999999999998887766 689999999999
Q ss_pred HHHHh-hhchhhHHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhhccccccCcccchheeecCC---CChHHH
Q 009002 110 SAISS-ALFTNDTSCVVLTEFVLKIARQHNLPPH-----PFLLALASSANIGSSATPIGNPQNLVIAVQSK---IPFGKF 180 (547)
Q Consensus 110 ~~~lS-~flsN~~~v~i~~Pi~~~ia~~~~~~p~-----~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~---~~f~~f 180 (547)
+.++| ++++|+++..++.|++..+++..|.++. .+.+.+..++|+||..||+|+|+|.+.++..+ ++|.+|
T Consensus 131 ~~~ls~~~~sntat~~i~~piv~~~~~~~~~~~~~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~~~~~~~w 210 (461)
T COG0471 131 TLFLSPAFPSNTATGGIMLPLILSLSPLLGSPPRDKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPISLSWGEW 210 (461)
T ss_pred HHHHhCceecccchhHhhHHhhhcchhhcCCChHHHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhcccCCCHHHH
Confidence 99999 9999999999999999999999999988 57888999999999999999999999998776 999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCC
Q 009002 181 LIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSP 260 (547)
Q Consensus 181 ~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 260 (547)
.+.+.|+.++.+... +++.++..|.+... ++ ++ .... . + +
T Consensus 211 ~~~~~p~~iv~l~~~----~li~~~~~~~~~~~-----~~------~~------~~~~---~-~----~----------- 250 (461)
T COG0471 211 FLAMLPLGILLLLLL----LLLLYKLFPPREIK-----ET------PN------NPVA---A-K----R----------- 250 (461)
T ss_pred HHHHhhHHHHHHHHH----HHHHHhhcChHhhc-----cC------cc------hHHH---H-H----H-----------
Confidence 999999998876653 33334444322110 00 00 0000 0 0 0
Q ss_pred CCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhcccccc
Q 009002 261 NVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKE 340 (547)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~ 340 (547)
+.+ +.++
T Consensus 251 ----------~~~-------------------------------------~~~~-------------------------- 257 (461)
T COG0471 251 ----------ELK-------------------------------------ELGP-------------------------- 257 (461)
T ss_pred ----------HHH-------------------------------------HhcC--------------------------
Confidence 000 0000
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHH
Q 009002 341 SLSSEWKRVLRKSCVYLITLGMLVSLLMG-----LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDG 415 (547)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~~~~i~~~~~g-----i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~a 415 (547)
...+.... ..++.........+ .+...+++++..++.+.++.+.+|+++++||+++++|+|++.++.+
T Consensus 258 ---~~~~~~l~----~~i~~l~~~~w~~~~~~~~~~~~~~ali~~~~~~~~~vl~~~~~~~~i~W~~lilf~g~i~l~~~ 330 (461)
T COG0471 258 ---LLRDEKLL----LGIFLLLLLLWIFGKLLGKIDATLIALIPVALLLLAGVLTWKEVYKKIDWGTLILFGGLIALGSA 330 (461)
T ss_pred ---cchhhHHH----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 00000000 01111111111112 1456778888888888888888899999999999999999999999
Q ss_pred HHHhCHHHHHHHHhhhhhhcc-hhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 009002 416 FNKTGIPSALWEFMEPYAEID-HVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVA 494 (547)
Q Consensus 416 l~~tG~~~~ia~~l~~~~~~~-~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~g 494 (547)
++++|..+++++.+.+..+.. ...-...+++.+..+++|+||++++++|.| +...++++.|.+| ..+.+++..++++
T Consensus 331 l~~tG~~~~i~~~l~~~~~~~~~~~il~~~~~~~~~~~~f~SntA~~~~m~P-i~~~ia~~l~~~p-~~~~~~v~~~as~ 408 (461)
T COG0471 331 LSKTGAIAWIAGLLAGSLGGLGPFAILLLLLLLTLVLTLFASNTATAIAMVP-IAIALASALGGAP-LLLLMLVAVSASG 408 (461)
T ss_pred HHhcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCCc-hHHHHHHHHHHhh
Confidence 999999999999997654422 122233456788899999999999999999 6788898888877 6778888999999
Q ss_pred cChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 495 GNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 495 g~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
|++||+|+++|.++++ +|+|| ++||+|.|+|+++++.++.+.+
T Consensus 409 ~~~tpv~~~~n~iv~g------~G~~k--~~d~~~~G~~l~~v~~iv~i~~ 451 (461)
T COG0471 409 GFLTPVGSPPNPIALG------SGYVK--FKDWWKVGFILSIVLIIVLLVI 451 (461)
T ss_pred hhhcCCCCCCCceEEC------CCCcc--HHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999 68885 9999999999999999887654
No 18
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=1.7e-37 Score=337.45 Aligned_cols=409 Identities=24% Similarity=0.335 Sum_probs=290.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCCh---HHHHhcCChhHHHHHHHHHHHHHHHH
Q 009002 4 ASTVKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITP---DQAYAAIDLPILGLLFGTMVVSVYLE 80 (547)
Q Consensus 4 ~~~~k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~---~~a~~~~~~~~i~~l~~~~il~~~l~ 80 (547)
+.+.+..++++++++ ++.++ +.+|.. +++++..+++.+++..++ +++++++.++++++++|+|+++.+++
T Consensus 27 ~~~~~~~l~i~~~~i--i~w~t---e~iP~~--vtal~~~~l~~~~~~~~~~~~~~~~s~f~s~~v~li~g~f~i~~al~ 99 (471)
T PF00939_consen 27 SPQGMRCLAIFLFAI--ILWIT---EAIPLP--VTALLIIILLPVLGGVDPVAAKEAFSGFGSPTVWLIIGGFIIGAALE 99 (471)
T ss_pred CHHHHHHHHHHHHHH--HHHHc---CCCChH--HHHHHHHHHHHHHhccccccHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 345556566555442 23343 445665 678888888878888877 99999999999999999999999999
Q ss_pred HhcHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhH-HHH-HHHHHHHHHHHHcCCCchH---------HHHHH
Q 009002 81 SADMFKYLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDT-SCV-VLTEFVLKIARQHNLPPHP---------FLLAL 148 (547)
Q Consensus 81 ~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~-~v~-i~~Pi~~~ia~~~~~~p~~---------~l~~~ 148 (547)
|||+.+|++.++.++.+ +++.+...++....+++.++.+++ .+. ++.|++.++|++.|.++.. +++..
T Consensus 100 ktgL~~Ria~~~l~~~g~~~~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~~~i~~~~~~~~~~~~~~~~~~~l~l~~ 179 (471)
T PF00939_consen 100 KTGLDKRIALWLLKRFGGSPKGLLFAIMLAGLLLSFFIPSTTARAAPILLPILLSICEALGSKPSSKTPRNLGKALMLGI 179 (471)
T ss_pred HcCHHHHHHHHHHHHhCCchheehhHhhHHHHHHhccCccHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHHHHHH
Confidence 99999999999887654 577888888888888999985544 443 5669999999999886643 66788
Q ss_pred HHHHhhhccccccCcccchheee------cCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHh
Q 009002 149 ASSANIGSSATPIGNPQNLVIAV------QSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVA 222 (547)
Q Consensus 149 a~aa~~Gg~~TpiG~p~Nliv~~------~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~ 222 (547)
++++++||+.||.|+++|.+..+ ..+++|.||+..++|+.++.+++... +.+++.|.+.++.+..+++..
T Consensus 180 ~~~a~~~g~~~~~g~~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 255 (471)
T PF00939_consen 180 AFAASIGGMGTLTGSAPNLIAAGFLESATGISISFLDWFIYALPPGIIMLVLMWL----ILYKLFKPDVKNLPDGKEFIK 255 (471)
T ss_pred hhhccccccccccCCCchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhccccccchhhHHHHH
Confidence 99999999999999999998763 24589999999999998876654332 223333321111000011100
Q ss_pred hhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhccccc
Q 009002 223 EEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKE 302 (547)
Q Consensus 223 e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (547)
|+ .++
T Consensus 256 ~~-----------------------------------------------~~~---------------------------- 260 (471)
T PF00939_consen 256 KE-----------------------------------------------LKE---------------------------- 260 (471)
T ss_pred HH-----------------------------------------------HHh----------------------------
Confidence 00 000
Q ss_pred ccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 009002 303 VSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALA 382 (547)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~ 382 (547)
+.|- .++.|+. .....+.++..+.....|++..+++++++.+
T Consensus 261 ------------------lg~~------------------s~~Ek~~--~~i~~~~i~lw~~~~~~~i~~~~va~~~~~l 302 (471)
T PF00939_consen 261 ------------------LGPM------------------SKKEKKV--LVIFLLTILLWITESFHGIDPAIVALLGAVL 302 (471)
T ss_pred ------------------cCCC------------------chhHhhh--hhhhhhhhhcccCcccCCCCHHHHHHHHHHH
Confidence 0000 0111111 1111111111222223568999999999999
Q ss_pred HHHhcCCChHHH-HhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhh-cchhhHHHHH-HHHHHHHHHhhchHH
Q 009002 383 LVVLDFKDARPS-LEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAE-IDHVGGIAVL-AAVILVLSNLASNVP 459 (547)
Q Consensus 383 l~~~~~~~~~~~-~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~-~~~~~~~~~l-~~v~~~lS~~isN~p 459 (547)
+.+.+..+.||. .+++||+++++++|.+.++.+++++|+.+|+++.+.+..+ .++......+ .......++|+||++
T Consensus 303 l~~~~il~~~d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~~~~la~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~~a 382 (471)
T PF00939_consen 303 LFLPGILTWKDAAQKKIPWGTLFLFGGALSLGTALEKSGAAKWLANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSNTA 382 (471)
T ss_pred HHHHHhccHHHHHhcCCCchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHhcCcHH
Confidence 999999999975 5789999999999999999999999999999999987654 2222222222 233456799999999
Q ss_pred HHHHHHHHHHHHHHHhh-cCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHH
Q 009002 460 TVLLLGGRVAASAAAIS-AADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIV 538 (547)
Q Consensus 460 ~~~ll~P~ia~~~a~~~-~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~ 538 (547)
+++++.| +....+... |.||....+..++.++.+++++|+++++|.++|+ .|+| +.+||+|.|+|++++.
T Consensus 383 ~~~il~P-i~~~~a~~~~g~~p~~~~l~~~~~~~~~~~~lP~~sp~~~i~~~------~g~~--~~~d~~k~G~~~~ii~ 453 (471)
T PF00939_consen 383 TVAILIP-IVISLAAALGGINPLALALIVAFASSFAGFLLPYSSPPNAIAYG------TGYY--KFKDFIKYGFPLTIIA 453 (471)
T ss_pred HHHHHHH-HHHHHhhhccCCChHHHHHHHHHHhhhccccCCcCCcceeEEEc------CCCC--CHHHHHHHhHHHHHHH
Confidence 9999999 557777777 7776543333444444555999999999999998 3666 5999999999999999
Q ss_pred HHHHhhh
Q 009002 539 TAIGLPL 545 (547)
Q Consensus 539 ~iv~~~~ 545 (547)
.++...+
T Consensus 454 ~iv~~~~ 460 (471)
T PF00939_consen 454 IIVIILV 460 (471)
T ss_pred HHHHHHH
Confidence 8876543
No 19
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=5.7e-37 Score=321.24 Aligned_cols=305 Identities=35% Similarity=0.530 Sum_probs=244.2
Q ss_pred chHHHHHHHHHHHHHHH-----ccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCc-hhHHHHH
Q 009002 33 IGRTAGSLLGAMLMVIF-----QVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGP-KDLLCRI 106 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~-----gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~-~~ll~~i 106 (547)
.++...+.++++++.++ +..+++|++++++|+++++++|+++ ++++++||++|++++++.++.+++ +++++.+
T Consensus 18 ~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~~~l~~~~ 96 (351)
T PF03600_consen 18 IPVVAAALLGALLVALFGFPGFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKPWRLLLLL 96 (351)
T ss_pred hhHHHHHHHHHHHHHHHHhccccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCHHHHHHHH
Confidence 45567778888888888 8999999999999999999999999 999999999999999999888764 5888999
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCCh--HHHHHhH
Q 009002 107 CLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPF--GKFLIGI 184 (547)
Q Consensus 107 ~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f--~~f~~~~ 184 (547)
+++++++|+|+||++++++++|++.++||+.|++|+++++++++++|+||++||+|||+|+++.+..+++| .||+..+
T Consensus 97 ~~~~~~lS~~~~N~~~v~~~~Pi~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~~~~~~~~~~ 176 (351)
T PF03600_consen 97 MLVTALLSAFLDNTTVVLIMIPIVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPFFGFDFFALG 176 (351)
T ss_pred HHHHHHHHHhhhcchHHHhhHHHHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhhcccccchhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888998 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCC
Q 009002 185 LPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNG 264 (547)
Q Consensus 185 lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (547)
+|..++++++.+...++..+| +++
T Consensus 177 ~p~~i~~~~~~~~~~~~~~~~----~~~---------------------------------------------------- 200 (351)
T PF03600_consen 177 LPAVIVGLLVLIFILYFLFRK----RKP---------------------------------------------------- 200 (351)
T ss_pred HHHHHHHHHHHHHHHHHHccc----cCc----------------------------------------------------
Confidence 999888766533222111111 000
Q ss_pred CCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccch
Q 009002 265 NGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSS 344 (547)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~ 344 (547)
.
T Consensus 201 -------------------------------------------------------------------------------~ 201 (351)
T PF03600_consen 201 -------------------------------------------------------------------------------K 201 (351)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhcCCChHHHHh------hcChhHHHHHHHHHHHHHHHH
Q 009002 345 EWKRVLRKSCVYLITLGMLVSLLMGL-NMSWTAITAALALVVLDFKDARPSLE------KVSYSLLIFFCGMFITVDGFN 417 (547)
Q Consensus 345 ~~~~~~~~~~~~~i~~~~i~~~~~gi-~~~~~al~~a~~l~~~~~~~~~~~~~------~idw~~ll~f~glf~l~~al~ 417 (547)
.. ....++....+......|. |...+.+.++.+++..++++.+|.++ ++||+++++|+|+|+++++++
T Consensus 202 --~~---~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~l~ 276 (351)
T PF03600_consen 202 --LF---ASPFILVLVVILVLLVSGLVPIWIALLIGALLALLTNCKDLKEAYRVLNSGASIDWNTLLFFAGLFIFVGALS 276 (351)
T ss_pred --hh---HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcccchhhhHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 00 0111111222222224575 54445555777777788889899998 999999999999999999999
Q ss_pred HhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHH-----HHHHHHHHHHhhcCCchH
Q 009002 418 KTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLL-----GGRVAASAAAISAADEKK 482 (547)
Q Consensus 418 ~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll-----~P~ia~~~a~~~~~~~~~ 482 (547)
+||..|.+++.+.+..+ ......+...+.++|+++||+|.+..+ .| +..+.+++.|.+|..
T Consensus 277 ~tG~~~~la~~l~~~~~---~~~~~~i~~~~~~ls~~~~n~p~~~~~~~~~~~p-i~~~~~~~~Gv~~~~ 342 (351)
T PF03600_consen 277 NTGAFEALADWLLSISG---PLGPLAILWVSALLSAVISNVPATLLMSNDAMLP-IAISMAQQFGVSPLP 342 (351)
T ss_pred HhHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHH-HHHHHHHHCCCCHHH
Confidence 99999999999976533 222345556788999999999999998 77 556666777877643
No 20
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=99.97 E-value=3.5e-27 Score=253.30 Aligned_cols=353 Identities=14% Similarity=0.150 Sum_probs=253.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc
Q 009002 63 LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRG-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPP 141 (547)
Q Consensus 63 ~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p 141 (547)
.++..++.-...++..++++|.+|++++++.++.++ ++.+.+.+..++.+++.+.+|+.+.+++.|+...++++.|+||
T Consensus 57 ~~~~~~i~~~~~l~~il~~sG~~~~i~~~iv~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~li~~p~~~~l~~~lgi~~ 136 (431)
T TIGR00784 57 APTAAMLLFAILYFGIMIDAGLFDPLIEKILSIVKGDPLKIAVGTAVLTMLIALDGDGTTTYMITVSAMLPLYKRLGMNP 136 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCceeHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHcCCCH
Confidence 456666677788899999999999999999988776 5778888888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHH
Q 009002 142 HPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVV 221 (547)
Q Consensus 142 ~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~ 221 (547)
..+...++.+++.++ .+|.|+|+|..+.. .|.++.||+.+..|..+.++++...+.++.+||..++ .... ..+
T Consensus 137 ~~l~~~i~~~~~~~~-~~P~g~p~~~~a~~-lg~~~~~~~~~~~p~~i~~li~~~~~~~~~~r~~~~~-~~~~-~~~--- 209 (431)
T TIGR00784 137 MVLAGIAMLGLGIMN-MIPWGGPTTRAISV-LGLDPSEFFVPLIPTMLGGILCVIAVAYLLGKKERKR-LGVI-QLE--- 209 (431)
T ss_pred HHHHHHHHHHhhhhc-ceeCCchHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH-hccc-ccc---
Confidence 999999999999999 99999999975544 6899999999999999998887766666665544321 0000 000
Q ss_pred hhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccc
Q 009002 222 AEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESK 301 (547)
Q Consensus 222 ~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (547)
. ++. ++.+
T Consensus 210 --~------------------~~~------------------------~~~~---------------------------- 217 (431)
T TIGR00784 210 --P------------------RAS------------------------QSYP---------------------------- 217 (431)
T ss_pred --h------------------hhh------------------------hhhh----------------------------
Confidence 0 000 0000
Q ss_pred cccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHH
Q 009002 302 EVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMG-LNMSWTAITAA 380 (547)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~g-i~~~~~al~~a 380 (547)
.. ++++ ..++++..++.++. ++.+++....+ +++.+.++++.
T Consensus 218 ----------~~----------------------~~~~---~~~~~~~~~~~Ll~--~l~viv~~~~~~~~~~~~~li~~ 260 (431)
T TIGR00784 218 ----------AA----------------------ALES---ELKRPRLIWFNLLL--TISLMVFLVLGTKHLSVLFLIAF 260 (431)
T ss_pred ----------cc----------------------chhh---hhcCchHHHHHHHH--HHHHHHHHHhcccCHHHHHHHHH
Confidence 00 0000 00001111223221 12222222233 67778878887
Q ss_pred HHHHHhcC----CChHHHH----hhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchh-hHHHHHHHHHHHH
Q 009002 381 LALVVLDF----KDARPSL----EKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHV-GGIAVLAAVILVL 451 (547)
Q Consensus 381 ~~l~~~~~----~~~~~~~----~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~-~~~~~l~~v~~~l 451 (547)
.+.++++. ...++.. +.+||.++++++|+| +++++++|..|.+++.+.+..+.+.. .....+.+++..+
T Consensus 261 ~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf--~~~l~~~G~i~~la~~l~~~~~~~~~~~~~~i~~~~s~~~ 338 (431)
T TIGR00784 261 VLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVF--TGILSGTKMVDAMAGSLVSIIPSSMGGFFPVIVALTSIPF 338 (431)
T ss_pred HHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHH--HHHHhhcCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 77666653 2234555 679999999999999 99999999999999999876432221 2334566788999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhh
Q 009002 452 SNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFG 531 (547)
Q Consensus 452 S~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G 531 (547)
|+++||+|++..+.| +....+++.|.++.. ....+..+..+.+.+|+ +++|.++++. +++ +..|+.|+|
T Consensus 339 s~~~sn~a~~~~l~P-iv~~ia~~~G~~~~~-l~~a~~i~~~~~~~SPv-s~~~~l~~~~------~~~--~~~d~~k~~ 407 (431)
T TIGR00784 339 TFVMSNDAYYFGVLP-IFAEAASAYGIDPVE-IARASIMGQPVHLLSPL-VPSTVLLVGM------LGV--SLGDHQKFA 407 (431)
T ss_pred HHHcCCHHHHHHHHH-HHHHHHHHcCCCHHH-HHHHHHhcccchhcCCc-hHHHHHHHHc------cCC--CHHHHHHHH
Confidence 999999999999999 556777778887643 22222223334569999 8999999994 677 489999999
Q ss_pred hHHHHHHHHHHhh
Q 009002 532 VPSTLIVTAIGLP 544 (547)
Q Consensus 532 ~p~~li~~iv~~~ 544 (547)
++...+..++...
T Consensus 408 ~~~~~~~~~v~~~ 420 (431)
T TIGR00784 408 VKWAVITSIVMTL 420 (431)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888776553
No 21
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2e-25 Score=237.65 Aligned_cols=424 Identities=17% Similarity=0.205 Sum_probs=276.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHH
Q 009002 7 VKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFK 86 (547)
Q Consensus 7 ~k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~ 86 (547)
.|--+..++....|+... +|.. +++++-..+....|+++.+|..+..=.++.+++.|..+++.+.|+.++.+
T Consensus 42 ~~c~y~~~vm~~yw~~Ea------lpl~--vtal~p~~l~p~~gi~~s~eva~~yf~d~~~l~~~~l~~A~AvE~~~Lh~ 113 (586)
T KOG1281|consen 42 ARCAYVILVMAVYWVTEA------LPLA--VTALLPIVLFPFFGIVRSNEVANEYFKDTNLLFLGGLIMALAVEKCNLHK 113 (586)
T ss_pred HHHHHHHHHHHHHHHHhh------cCch--HHHHHHHHHHHHhcCccHHHHHHHHHhhhhHHHhhhHHHHHHHHHhhhhH
Confidence 455556666667776544 3554 67899999999999999999887777788888888999999999999999
Q ss_pred HHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCC--------------------------
Q 009002 87 YLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNL-------------------------- 139 (547)
Q Consensus 87 ~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~-------------------------- 139 (547)
++|.++.+..+ .|.++.+.++..++++|+|++|+++.++|+|++.++-++...
T Consensus 114 riaL~~~~~vg~~P~~l~lg~m~~taflsmwisntA~tamm~pi~~avL~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 193 (586)
T KOG1281|consen 114 RIALKVLRKVGVEPARLMLGFMGVTAFLSMWISNTATTAMMIPIATAVLQELPSFNDEEQHRMLESVSHLWAVEAIPTSF 193 (586)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHhhcchhhhcCCccc
Confidence 99998876655 688899999999999999999999999999999887765433
Q ss_pred -Cc-------------------------------------hHHHHHHHHHHhhhccccccCcccchheee---------c
Q 009002 140 -PP-------------------------------------HPFLLALASSANIGSSATPIGNPQNLVIAV---------Q 172 (547)
Q Consensus 140 -~p-------------------------------------~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~---------~ 172 (547)
.| .-+.+.+++++++||.+|..||.+|++..+ .
T Consensus 194 ~vp~~~v~~~~~~~~~g~~~~~~~~~i~~~~~s~~~~~~~~g~~L~ia~Sa~igg~~titGT~pnlVll~~~~~~fp~s~ 273 (586)
T KOG1281|consen 194 LVPLLTVFFPILKDETGKPMSPTSSSILSTMWSSTIMLLLKGFTLGIAYSAYIGGTLTITGTAPNLVLLGNMNVRFPLSM 273 (586)
T ss_pred CCcchhhcccccCCccCCCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHhhcchhhhcCCCccHHHHHHHHHhccccc
Confidence 11 235678999999999999999999998753 2
Q ss_pred CCCChHHHHHhHHHHHHHHHHHHHHHHHHHHH-hhhcCC----CcchhhhhhHHhhhcccccccCCCccccccccccccc
Q 009002 173 SKIPFGKFLIGILPAMFVGVAVNALILLTMYW-KLLNSH----KDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEW 247 (547)
Q Consensus 173 ~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~-~lLp~~----~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~ 247 (547)
...+|..|+...+|+.+..+.+...++-.++- .-++++ +.+...+++...++.+++
T Consensus 274 ~~~Nf~swl~Fs~ppmL~~L~~~w~~l~~lflG~~~~~~~~~~~s~~~s~q~~~a~~~i~~------------------- 334 (586)
T KOG1281|consen 274 WVSNFASWLFFSFPPMLRYLLASWPFLQALFLGIALAANIGGMSSPISSPQNIVAKKVIKP------------------- 334 (586)
T ss_pred cccchHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhhhhhcCCCCCcCChHHHHHHHHhhH-------------------
Confidence 34778888888889888777766554432221 111111 000001111111111100
Q ss_pred hhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhh
Q 009002 248 NSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITL 327 (547)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l 327 (547)
+.++. |+.... +... -+.- ==+-...+.++ ..+.+|
T Consensus 335 ----------~y~~l-G~~~~~----e~~v----~ilf------il~v~lw~tr~----------------p~~~pg--- 370 (586)
T KOG1281|consen 335 ----------EYDGL-GPMFFA----EKPV----FILF------ILLVWLWFTRD----------------PGFVPG--- 370 (586)
T ss_pred ----------hhccc-ccchHH----HHHH----HHHH------HHHHHHHHhcC----------------CCCccc---
Confidence 00000 000000 0000 0000 00000000000 000000
Q ss_pred hhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh---------------------
Q 009002 328 VNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVL--------------------- 386 (547)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~~~--------------------- 386 (547)
..+.+ + ++. + ......++++..++.++
T Consensus 371 w~~~f------~---~~~-~----------------------~~d~t~~~~i~ilLf~lps~~~~f~~~~~~~~~p~~~~ 418 (586)
T KOG1281|consen 371 WGDLF------K---PGF-F----------------------QSDSTSVVIITILLFCLPSQIPGFGKSGFIAIIPIVVF 418 (586)
T ss_pred hHhhc------C---Ccc-c----------------------eehhhHHHHHHHHhheecccCccccccCcccccccccc
Confidence 00000 0 000 0 00111222222222221
Q ss_pred -cCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHH
Q 009002 387 -DFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLG 465 (547)
Q Consensus 387 -~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~ 465 (547)
+..+.++.-++++|+++++.+|.|+++.|.+++|+.+++++.+.++.+.+...-..++.+++.++|+|.||++++.+++
T Consensus 419 ~~l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~TeF~Sntata~Ifi 498 (586)
T KOG1281|consen 419 FGLGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVVTEFVSNTATASIFI 498 (586)
T ss_pred cCccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHhcchhheeehH
Confidence 1123345555799999999999999999999999999999999875444333334455678899999999999999999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHh
Q 009002 466 GRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGL 543 (547)
Q Consensus 466 P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~ 543 (547)
|+ ...+|+.++.+|.+ ++.-...+|+.+++.|.+.++|.++++. |+. +-+||+|.|+.+++.+.+...
T Consensus 499 PI-l~ela~~l~~hply-l~lp~tl~~SfAf~LPvstpPNaivfs~------~~~--k~~dm~~~G~~l~i~~~a~l~ 566 (586)
T KOG1281|consen 499 PI-LAELAEALGIHPLY-LMLPTTLACSFAFMLPVSTPPNAIVFSM------GDI--KGKDMLKVGLFLNIGGPAILL 566 (586)
T ss_pred Hh-HHHHHHhcCCCCce-eehhHHHHHHHHHhcCCCCCCCeEEEee------ccc--chhhHhhhccchhHHHHHHHH
Confidence 95 46788888888754 5556777899999999999999999984 333 479999999988887766443
No 22
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=99.86 E-value=1.2e-20 Score=202.20 Aligned_cols=184 Identities=24% Similarity=0.270 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccC-ChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q 009002 11 LGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVI-TPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLG 89 (547)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~-~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia 89 (547)
++..++..+......+....+ +....+++++.++++.+.. +++|+++.++|+++++++|+++++.+++++|+.|+++
T Consensus 219 ~~~~i~~~~v~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la 296 (413)
T cd01116 219 KSLTILTLVIIGFVLHSPLGV--SLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGLFVLVGGLEELGIIEWIA 296 (413)
T ss_pred HHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 344444444443443333323 3446788888888889886 9999999999999999999999999999999999999
Q ss_pred HHHHhhcCC-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchh
Q 009002 90 RMLSWKSRG-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLV 168 (547)
Q Consensus 90 ~~i~~~~~~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nli 168 (547)
+.+.+..++ ++..+..+++++.++|+|+||++++.++.|++.++|++.|.+|.++.+++++++|+|++.||+|+|+|++
T Consensus 297 ~~l~~~~~~~~~~~~~~~~~~~~~~s~f~sn~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~a~~g~~~tp~gs~~n~i 376 (413)
T cd01116 297 ELLVGVILGRIAVAVILILWISALLSAFIDNIPVTATMIPIVKDLASQLGIPLLPLWWALALGACLGGNGTLIGASANVV 376 (413)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccccccchHHHH
Confidence 998877654 5666677788999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecC-----CCChHHHHHhHHHHHHHHHHHHH
Q 009002 169 IAVQS-----KIPFGKFLIGILPAMFVGVAVNA 196 (547)
Q Consensus 169 v~~~~-----~~~f~~f~~~~lp~~iv~~~v~~ 196 (547)
..+.. +++|.||++++.|..++++++..
T Consensus 377 ~~~~~~~~g~~~~~~~~~~~g~~~~i~~~~~~~ 409 (413)
T cd01116 377 AAGIAEQHGYKISFWEFLKVGFPIMLVSLILAT 409 (413)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 87432 38999999999999988766543
No 23
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.85 E-value=1.3e-18 Score=186.49 Aligned_cols=156 Identities=15% Similarity=0.288 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhc
Q 009002 39 SLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRICLISAISSALF 117 (547)
Q Consensus 39 al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~fl 117 (547)
+-+|.+++.+.=-.+|+| +++++++++++++.....+++||..|+.+++..+..+ ++++..+.+.+++.++|.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~----~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i~~~lfs~~~ 103 (433)
T PRK09412 28 GGLGVLILTFIFGLKPGS----IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPIVTYLFTFLA 103 (433)
T ss_pred HHHHHHHHHHhcCCCCCC----CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHh
Confidence 334444444332456666 9999999999999999999999999999997776655 46777777888889999888
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheee--cCCCChHHHHHhHHHHHHHHHHHH
Q 009002 118 TNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAV--QSKIPFGKFLIGILPAMFVGVAVN 195 (547)
Q Consensus 118 sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~--~~~~~f~~f~~~~lp~~iv~~~v~ 195 (547)
+|..+++.+.|+.+.+|++.|.||.+.+....+++++|+.+||+|.++|.+... ..|++|.||++..+|..++.+++.
T Consensus 104 ~~~~~~i~~~PI~i~ia~~lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia~~gi~f~~~~~~~lp~~iv~~~~~ 183 (433)
T PRK09412 104 GTGHIAFSTLPVIAEVAKEQGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLEPLGVSYLTLLMVVIPSTLLAVMVA 183 (433)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 887778889999999999999999988889999999999999998887776654 348999999999999998887765
Q ss_pred HHH
Q 009002 196 ALI 198 (547)
Q Consensus 196 ~~~ 198 (547)
..+
T Consensus 184 ~~~ 186 (433)
T PRK09412 184 AFV 186 (433)
T ss_pred HHH
Confidence 544
No 24
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=99.84 E-value=1.5e-17 Score=177.89 Aligned_cols=345 Identities=14% Similarity=0.135 Sum_probs=220.5
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHH
Q 009002 57 AYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRG-PKDLLCRICLISAISSALF-TNDTSCVVLTEFVLKIA 134 (547)
Q Consensus 57 a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~-~~~ll~~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia 134 (547)
.++..++..+..+.--..++..++++|..|++.+.+.+..++ +.......+..++++++.. +|.+++..+.|+.+.+.
T Consensus 31 ~~~~~~~~~l~ai~~Fi~~g~~l~~~G~~~~l~~~~~~~~g~~~~~~~~~~~~~~~l~g~l~Gs~~ataa~~~~~~iP~m 110 (405)
T TIGR00786 31 LFGGTDSFTLLAIPFFILAGNLMNRGGLARRLLNFAKALVGHLRGGLGHVNVLACALFAAVSGSSVATAAALGSLLIPAM 110 (405)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 345556666655555568899999999999999998877654 5667777888899999999 99999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHhhhccccccCcccch--hee-ecCCCChHHHHHhH-HHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009002 135 RQHNLPPHPFLLALASSANIGSSATPIGNPQNL--VIA-VQSKIPFGKFLIGI-LPAMFVGVAVNALILLTMYWKLLNSH 210 (547)
Q Consensus 135 ~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nl--iv~-~~~~~~f~~f~~~~-lp~~iv~~~v~~~~~~~~~~~lLp~~ 210 (547)
++.|.||.. +.++.+..|+..+. .|+|. +++ ...|.++.|++..+ +|..+..+.. +.+.+++.+|.. +
T Consensus 111 ~~~g~~~~~---a~av~a~~~~~g~l--~Pp~~~~i~~a~~~~i~~~~~~~a~~~p~~l~~~~~-~~~~~~~~~~~~--~ 182 (405)
T TIGR00786 111 TKAGYPKAF---AAGVIAASGIIGPL--IPPSIVMIIYGVAAGVSIAKLFIAGILPGLLLALSL-MLTIWWVARRLG--Y 182 (405)
T ss_pred HHcCCCHHH---HHHHHHHHhccccc--cCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC--C
Confidence 999999976 44444443333333 56665 343 34689999998744 4544443321 222222222210 0
Q ss_pred CcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCc
Q 009002 211 KDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGT 290 (547)
Q Consensus 211 ~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 290 (547)
+..+ + + +.++
T Consensus 183 ~~~~---~-------------------------~--------------------------~~~~---------------- 192 (405)
T TIGR00786 183 PRPP---K-------------------------A--------------------------SLRQ---------------- 192 (405)
T ss_pred CCCC---c-------------------------c--------------------------CHHH----------------
Confidence 0000 0 0 0000
Q ss_pred chhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhC-
Q 009002 291 FESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMG- 369 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~g- 369 (547)
+....++. .+.. ++.+.++.....|
T Consensus 193 --------------------------------------------------~~~~~~~~-~~~l---~l~~~vi~~~~~g~ 218 (405)
T TIGR00786 193 --------------------------------------------------RLRAFRKS-IWAL---LLPVLIIGGIFSGI 218 (405)
T ss_pred --------------------------------------------------HHHHHHHH-HHHH---HHHHHHHHHHHHhh
Confidence 00000111 1111 1111222223344
Q ss_pred CcHHHHHHHHHHHHH-----HhcCCChHHHHhhcC------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchh
Q 009002 370 LNMSWTAITAALALV-----VLDFKDARPSLEKVS------YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHV 438 (547)
Q Consensus 370 i~~~~~al~~a~~l~-----~~~~~~~~~~~~~id------w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 438 (547)
.++...+..+++..+ ..++.+.+|..+.++ |.+++.+++...+...++++|+.+.+++.+.+.. .+..
T Consensus 219 ~~~~~a~~~~~~~alli~~~~~~~~~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~~-~~~~ 297 (405)
T TIGR00786 219 FTPTEAAAVAAVYALALSTFVYRELTLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAI-SSPI 297 (405)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCC-ccHH
Confidence 445444433333222 224567777777777 7999999999999999999999999999997642 2222
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhh-hhhhhhHHHHhccccCCC
Q 009002 439 GGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSL-VGSAANLIVCEQAHRAPH 517 (547)
Q Consensus 439 ~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~Tp-iGs~aNliv~~~~~~~~~ 517 (547)
....++..+..+++.+++|+++..++.| +....+++.|.||. .+.......+..|++|| +|...+ ++.+.
T Consensus 298 ~~~~li~~~~~ilg~~~~~~a~~~i~~P-I~~p~a~~~Gv~p~-~~~~~~~~~~~~g~ltPPvg~~~~-~~~~~------ 368 (405)
T TIGR00786 298 VFLIMINILLLIVGMFMDLTPAILILTP-ILLPVAVHLGIDPV-HFGVMFVLNLEIGLLTPPVGTNLF-VASGV------ 368 (405)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHHHHcCCChH-HHHHHHHHHHHHhcCCCCchHHHH-HHHHh------
Confidence 2233445677788999999999999999 55778888899874 33344455566689997 984333 44553
Q ss_pred CCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 518 LGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 518 ~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
+|| ++.|++|.++|+.++.+++...+
T Consensus 369 ~~~--~~~~~~k~~~p~~~~~~~~~~~~ 394 (405)
T TIGR00786 369 AKM--SITEVTRALWPFLLAQFLVLLLV 394 (405)
T ss_pred cCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 49999999999988877765543
No 25
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=99.84 E-value=1.1e-19 Score=192.47 Aligned_cols=168 Identities=26% Similarity=0.421 Sum_probs=151.7
Q ss_pred CCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC--CchhHHHHH
Q 009002 29 PFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR--GPKDLLCRI 106 (547)
Q Consensus 29 ~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~--~~~~ll~~i 106 (547)
+..|. ...++.+++++.+.|+++++|+.++++|+++++++|++.++.+++++|+.|++++.+.+..+ +++..+..+
T Consensus 209 ~~~~~--~~~a~~~~~~l~~~~~~~~~~~~~~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~~~~~~~~~~~~~~~~ 286 (382)
T cd01115 209 GLLPV--SVAIAIGAIVLVFGGVLLTKEDYKSIDWGIIFLFAGGIPLGKALESSGAAALIAEALISLLGGLPPFAILLLL 286 (382)
T ss_pred CcccH--HHHHHHHHHHHHHHccCCHHHHHHcCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34454 46788888999999999999999999999999999999999999999999999999886433 456778888
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHH
Q 009002 107 CLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILP 186 (547)
Q Consensus 107 ~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (547)
++.+.++|.|+||++++.++.|++..++++.|.||.++.++.++++|. +..||+|+|+|++..+.+++++.||++.+.|
T Consensus 287 ~~~~~~ls~~~sn~~~~~i~~Pi~~~~~~~~g~~p~~~~~~~~~~~~~-~~~tp~~~~~n~i~~~~~~i~~~~~~~~~~p 365 (382)
T cd01115 287 CLLTLVLTNFISNTATAVLLAPIALSIALSLGLPPEALLLAVAIGASC-AFMLPVGTPPNAIVLGPGGYKFSDFAKVGLP 365 (382)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHcCccCCCCCeeeeCCCCccHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999997 7999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 009002 187 AMFVGVAVNALIL 199 (547)
Q Consensus 187 ~~iv~~~v~~~~~ 199 (547)
+.++++++...+.
T Consensus 366 ~~i~~~~~~~~~~ 378 (382)
T cd01115 366 LSILSLVVSVTMI 378 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887655443
No 26
>PLN00136 silicon transporter; Provisional
Probab=99.84 E-value=2.9e-20 Score=201.57 Aligned_cols=167 Identities=15% Similarity=0.177 Sum_probs=145.0
Q ss_pred CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHH
Q 009002 370 LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVIL 449 (547)
Q Consensus 370 i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~ 449 (547)
++..+++++++++++++++.+.+|+++.+||+++++++|+|+++.++++||+.|++++.+.+..+ +...-...+.+++.
T Consensus 33 i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~-~~~~ll~~l~~~ta 111 (482)
T PLN00136 33 IGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQ-GGRDLLCRVCVVTA 111 (482)
T ss_pred ccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 57777899999999999999999999999999999999999999999999999999999876432 22223345567899
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHh
Q 009002 450 VLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLK 529 (547)
Q Consensus 450 ~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k 529 (547)
++|+|++|++++++|.| +....++..+.+|.+.++..+++++.||+.||+|+++|+++.+ .+|| +|.||+|
T Consensus 112 ~lSafl~N~~t~llm~P-iv~~la~~~~~~p~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~------~~~i--~F~dF~~ 182 (482)
T PLN00136 112 LASALFTNDTCCVVLTE-FVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAF------NSKI--TFPKFLL 182 (482)
T ss_pred HHHHHhccHHHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccccchheeeC------CCCC--CHHHHHH
Confidence 99999999999999999 6678888889988878888899999999999999999999876 2455 7999999
Q ss_pred hhhHHHHHHHHHHhhhc
Q 009002 530 FGVPSTLIVTAIGLPLI 546 (547)
Q Consensus 530 ~G~p~~li~~iv~~~~i 546 (547)
.|.|.+++.+++++..+
T Consensus 183 ~~~P~~li~l~v~~~~l 199 (482)
T PLN00136 183 GILPAMLAGMAVNMVML 199 (482)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988776543
No 27
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=99.83 E-value=4e-19 Score=192.17 Aligned_cols=187 Identities=18% Similarity=0.166 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhc-CChhHHHHHHHHHHHHHHHHHhcHHH
Q 009002 8 KVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAA-IDLPILGLLFGTMVVSVYLESADMFK 86 (547)
Q Consensus 8 k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~-~~~~~i~~l~~~~il~~~l~~sG~~~ 86 (547)
|....++++....++++.+... +.+...+++.++.++.++|++++||+.+. ++|+++++++|++.++.+++++|+.+
T Consensus 247 ~e~~~l~v~~~~i~~~~~~~~~--~~~~~~~al~~~~ll~~~g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~sG~~~ 324 (444)
T TIGR00785 247 REKALLGIFLLALLLWIFGGSL--GINASVVALLAVVLMLFLGIVTWKDIQKNKVAWNTLILFGGLIGLAGGLKKSGFIK 324 (444)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC--CCChHHHHHHHHHHHHHhCcccHHHHhhccCCcHHHHHHHHHHHHHHHHHHcCHHH
Confidence 4445556666666666655322 34456788999999999999999999986 99999999999999999999999999
Q ss_pred HHHHHHHhhcC--C-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCc
Q 009002 87 YLGRMLSWKSR--G-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGN 163 (547)
Q Consensus 87 ~ia~~i~~~~~--~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~ 163 (547)
++++++.+..+ + +..++..+++.+.++++|+||++++.++.|++..+|++.|.+|.++.+..++++|+||.+||+|+
T Consensus 325 ~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~i~~Pi~~~ia~~~G~~p~~~~~~~~~~~~~~~~~tP~~s 404 (444)
T TIGR00785 325 WFSEKLVGILDGLSPTIAVLVLVVLFYIILYFFASNTAHTAALVPIFFSVASAQGIPLELLALALALSASLMGFLTPYAT 404 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999887653 3 24445667788889999999999999999999999999999999999999999999989999999
Q ss_pred ccchheeecCCCChHHHHHhHHHHHHHHHHHHH
Q 009002 164 PQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNA 196 (547)
Q Consensus 164 p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~ 196 (547)
|+|.+.++.+++++.||++.+.|..++.+++..
T Consensus 405 ~~n~i~~~~g~~~~~~~~k~~~p~~l~~~~~~~ 437 (444)
T TIGR00785 405 PPNAIAYGSGYVKIKDMWRVGAIIGIVGLIVLL 437 (444)
T ss_pred CccceeecCCCccHHHHHHhHHHHHHHHHHHHH
Confidence 999999888889999999999999988776543
No 28
>PRK15445 arsenical pump membrane protein; Provisional
Probab=99.83 E-value=1.8e-19 Score=193.91 Aligned_cols=187 Identities=19% Similarity=0.247 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHH----HccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHH
Q 009002 10 VLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVI----FQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMF 85 (547)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l----~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~ 85 (547)
....+++..+++...... .++++.+..+++++.++++ .|+++++|+.++++|+++++++|+++++.++++||+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~--~l~i~~~~va~~~a~ll~~~~~~~~~~~~~~~~~~v~W~~l~~~~g~~~l~~al~~tG~~ 301 (427)
T PRK15445 224 KLGWIVLALLLVGYFVLE--PLGIPVSAIAGVGALILLLVARRGHAINTKKVLKGAPWQIVIFSLGMYLVVYGLRNAGLT 301 (427)
T ss_pred HHHHHHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHhCChHHHHHHHHHHHHHHHHHHcCHH
Confidence 444455444444333222 2334445677888877776 3789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcc
Q 009002 86 KYLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNP 164 (547)
Q Consensus 86 ~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p 164 (547)
+++++.+.+..+ ++......++.+++++|+|+||+++++++ |+.+..++..|.+|.++++++++++|+||.+||+|+|
T Consensus 302 ~~la~~l~~~~~~~~~~~~~~~~~~s~~lS~~~sN~p~~~~~-~~~i~~~~~~~~~~~~l~~al~~ga~~gg~~T~iGs~ 380 (427)
T PRK15445 302 DYLAGVLNYLADQGLFAATLGTGFLAAFLSSVMNNMPTVLIG-ALAIDGSNATGVIKEAMIYANVIGSDLGPKITPIGSL 380 (427)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHhccCCcchHHHHHHHHHHhcccCcccchhhhH
Confidence 999999876554 45677778889999999999999999976 5555556667778889999999999999999999999
Q ss_pred cchhee---ecCC--CChHHHHHhHHHHHHHHHHHHHHHH
Q 009002 165 QNLVIA---VQSK--IPFGKFLIGILPAMFVGVAVNALIL 199 (547)
Q Consensus 165 ~Nliv~---~~~~--~~f~~f~~~~lp~~iv~~~v~~~~~ 199 (547)
+|+++. ++.| ++|.||+|.|+|.++++++++...+
T Consensus 381 an~i~~~~~~~~g~~i~f~~f~k~G~~~~~~~~~~~~~~l 420 (427)
T PRK15445 381 ATLLWLHVLAQKGVKISWGYYFKVGIIITLPVLLVTLLAL 420 (427)
T ss_pred HHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999754 3334 5699999999999999888766554
No 29
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=99.81 E-value=1.4e-18 Score=187.11 Aligned_cols=186 Identities=22% Similarity=0.255 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHH----HHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHH
Q 009002 10 VLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAML----MVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMF 85 (547)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~----l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~ 85 (547)
.++..+++.+.++..+... .|++....++.++.+ +...|+.++||+.++++|+++++++|+|+++.+++++|+.
T Consensus 225 ~~~~~v~~~~i~~~~~~~~--~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~f~l~~~l~~tG~~ 302 (429)
T TIGR00935 225 KKCWIVLVFLLVGFFVLEF--LGIPVSAIAWIAALGAIALAILADAIDTEKVLRGAPWQIVLFSAGMYLVVEGLKNLGLT 302 (429)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccCchHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCcHHHHHHHHHHHHHHHHHHCCHH
Confidence 4555666655555554432 233323334444422 2246899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH--cCCCchHHHHHHHHHHhhhccccccC
Q 009002 86 KYLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQ--HNLPPHPFLLALASSANIGSSATPIG 162 (547)
Q Consensus 86 ~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~--~~~~p~~~l~~~a~aa~~Gg~~TpiG 162 (547)
+++++.+....+ ++...+..++.+++++|+|+||++ ++.|++.++|++ .|.+|.++.+++++++|+||.+||+|
T Consensus 303 ~~la~~~~~~~~~~~~~~~~~~~~~~~~ls~~~sN~~---~~~pi~~~i~~~~~~g~~~~~~~~~l~~~~~~gg~~tp~g 379 (429)
T TIGR00935 303 EYLGGILNVLEDRGLWAAILGTGFVSAFLSSIMNNMP---TMLVGALSIDQSSATGLPKEPMVYANVIGADLGPKITPIG 379 (429)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHccHH---HHHHHHHHHhhccccccchhHHHHHHHHHHhcCcccCccc
Confidence 999995544433 345666678888999999999999 479999999875 47899999999999999999999999
Q ss_pred cccchheee---cCC--CChHHHHHhHHHHHHHHHHHHHHHHH
Q 009002 163 NPQNLVIAV---QSK--IPFGKFLIGILPAMFVGVAVNALILL 200 (547)
Q Consensus 163 ~p~Nliv~~---~~~--~~f~~f~~~~lp~~iv~~~v~~~~~~ 200 (547)
+|+|++..+ ..| ++|+||++.++|..+++++++..+++
T Consensus 380 s~anli~~~~~~~~g~~~~~~df~k~g~~~~~~~~~i~~~~l~ 422 (429)
T TIGR00935 380 SLATLLWLHVLEQKGYKISWGYYFRTGIPMTIPVLFVTLAYLL 422 (429)
T ss_pred cHHHHHHHHHHHHCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998653 333 67899999999999999888776664
No 30
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.4e-18 Score=186.40 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHH
Q 009002 9 VVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYL 88 (547)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~i 88 (547)
..+...++..+....++++.- ..++.+.+++.+..++.++|+++++|+++.++|+++++++|++.++.+++++|..+++
T Consensus 262 ~~l~~~i~~l~~~~w~~~~~~-~~~~~~~~ali~~~~~~~~~vl~~~~~~~~i~W~~lilf~g~i~l~~~l~~tG~~~~i 340 (461)
T COG0471 262 EKLLLGIFLLLLLLWIFGKLL-GKIDATLIALIPVALLLLAGVLTWKEVYKKIDWGTLILFGGLIALGSALSKTGAIAWI 340 (461)
T ss_pred hHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHhHHHHHHhCCchHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 344444444444444444321 1124567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC--chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccc
Q 009002 89 GRMLSWKSRG--PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQN 166 (547)
Q Consensus 89 a~~i~~~~~~--~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~N 166 (547)
++.+....++ +..+++.+++.+.+++.|+||++++..|.|+...++++.+.+|..+++..+++|+ ++++||+|+|+|
T Consensus 341 ~~~l~~~~~~~~~~~il~~~~~~~~~~~~f~SntA~~~~m~Pi~~~ia~~l~~~p~~~~~~v~~~as-~~~~tpv~~~~n 419 (461)
T COG0471 341 AGLLAGSLGGLGPFAILLLLLLLTLVLTLFASNTATAIAMVPIAIALASALGGAPLLLLMLVAVSAS-GGFLTPVGSPPN 419 (461)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHh-hhhhcCCCCCCC
Confidence 9998866553 4666778888999999999999999999999999999999999777777777776 599999999999
Q ss_pred hheeecCCCChHHHHHhHHHHHHHHHHHHHHHHH
Q 009002 167 LVIAVQSKIPFGKFLIGILPAMFVGVAVNALILL 200 (547)
Q Consensus 167 liv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~ 200 (547)
.++++.++++++||++.|+|..++++++...+..
T Consensus 420 ~iv~g~G~~k~~d~~~~G~~l~~v~~iv~i~~~~ 453 (461)
T COG0471 420 PIALGSGYVKFKDWWKVGFILSIVLIIVLLVIGL 453 (461)
T ss_pred ceEECCCCccHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887665543
No 31
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=99.79 E-value=4.2e-18 Score=182.74 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=141.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCChHHHHhh--cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHH
Q 009002 369 GLNMSWTAITAALALVVLDFKDARPSLEK--VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAA 446 (547)
Q Consensus 369 gi~~~~~al~~a~~l~~~~~~~~~~~~~~--idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~ 446 (547)
++|...+++.++.++.+++..+.+|++++ +||+++++++|+|+++.++++||+.+++++.+.+..+.++..-...++.
T Consensus 19 ~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~l~~~~~~~~~~l~~~~~~ 98 (416)
T cd01118 19 GLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAALAARWARGSGRKLFTLIVL 98 (416)
T ss_pred CCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 47999999999999999999999999986 6799999999999999999999999999999976544333333455667
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCc---hHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceee
Q 009002 447 VILVLSNLASNVPTVLLLGGRVAASAAAISAADE---KKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLS 523 (547)
Q Consensus 447 v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~---~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~ 523 (547)
++.++|.|+||+++++++.| +....++..+.+| ....+..++.++.||++||+|+++|+++++. + +++
T Consensus 99 ~~~~ls~~~sn~a~~~~~~P-i~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~~~n~i~~~~------~--~i~ 169 (416)
T cd01118 99 LGAAVTAFFANDGTALILTP-IVIALLRALGAKKNRTLPFLYACAFIADAASLPLPISNLVNIVTAGY------F--GIG 169 (416)
T ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHHHHHcCCCcccccHHHHHHHHHHcccccccccCCchHHHhHhc------c--CCC
Confidence 88999999999999999999 5678888888887 4445556677889999999999999998872 3 357
Q ss_pred hhhhHhhhhHHHHHHHHHHhhh
Q 009002 524 FWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 524 f~df~k~G~p~~li~~iv~~~~ 545 (547)
|.||+|.|+|.+++.+++...+
T Consensus 170 ~~~~~~~~~p~~li~~~~~~~~ 191 (416)
T cd01118 170 FTEYAALMFLPSIVSILATYVV 191 (416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988776544
No 32
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.78 E-value=8.4e-18 Score=183.23 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHH-HhcCChhHHHHHHHHHHHHHHHHHhcHHHH
Q 009002 9 VVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQA-YAAIDLPILGLLFGTMVVSVYLESADMFKY 87 (547)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a-~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ 87 (547)
..+++.++.++.++.+.+. ..+++...+++++++++.+.|++++||. .++++|+++++++|.+.++.++++||+.+|
T Consensus 268 Ek~~~~i~~~~i~lw~~~~--~~~i~~~~va~~~~~ll~~~~il~~~d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~~~~ 345 (471)
T PF00939_consen 268 EKKVLVIFLLTILLWITES--FHGIDPAIVALLGAVLLFLPGILTWKDAAQKKIPWGTLFLFGGALSLGTALEKSGAAKW 345 (471)
T ss_pred HhhhhhhhhhhhhcccCcc--cCCCCHHHHHHHHHHHHHHHHhccHHHHHhcCCCchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 3445556666666666554 3345556889999999999999999985 578999999999999999999999999999
Q ss_pred HHHHHHhhcC--CchhHHHH-HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHhhhccccccCc
Q 009002 88 LGRMLSWKSR--GPKDLLCR-ICLISAISSALFTNDTSCVVLTEFVLKIARQH-NLPPHPFLLALASSANIGSSATPIGN 163 (547)
Q Consensus 88 ia~~i~~~~~--~~~~ll~~-i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~-~~~p~~~l~~~a~aa~~Gg~~TpiG~ 163 (547)
+++.+....+ ++...+.. +.+...+.+.|+||++++.+++|++.++|+.. |.||....++++++++.+++++|+++
T Consensus 346 la~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~~a~~~il~Pi~~~~a~~~~g~~p~~~~l~~~~~~~~~~~~lP~~s 425 (471)
T PF00939_consen 346 LANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSNTATVAILIPIVISLAAALGGINPLALALIVAFASSFAGFLLPYSS 425 (471)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhhhccccCCcCC
Confidence 9999886654 34444433 34445667999999999999999999999999 99999999999999998779999999
Q ss_pred ccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009002 164 PQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLL 207 (547)
Q Consensus 164 p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lL 207 (547)
|+|.+.++.++++.+||+|.|+|..++++++... +...+|+.+
T Consensus 426 p~~~i~~~~g~~~~~d~~k~G~~~~ii~~iv~~~-~~~~~w~~i 468 (471)
T PF00939_consen 426 PPNAIAYGTGYYKFKDFIKYGFPLTIIAIIVIIL-VAYPYWKLI 468 (471)
T ss_pred cceeEEEcCCCCCHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999888776543 334456654
No 33
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=99.76 E-value=1.2e-15 Score=163.10 Aligned_cols=140 Identities=16% Similarity=0.268 Sum_probs=124.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcC
Q 009002 60 AIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHN 138 (547)
Q Consensus 60 ~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~ 138 (547)
+.|+++++++++++...+.+++||.+|+..+++.++.+ ++++..+.+.+++.++|.+.+|..++..+.|+.+.+|++.|
T Consensus 41 ~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~llipii~~lfs~~~g~~~~~l~f~PI~i~la~~lG 120 (430)
T TIGR00770 41 KIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITILAPSVTYFLTILAGTGHVVYSTLPVIAEVAKEQG 120 (430)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhC
Confidence 39999999999999999999999999999998877654 47788888899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhhccccccCcccchheee--cCCCChHHHHHhHHHHHHHHHHHHHHHH
Q 009002 139 LPPHPFLLALASSANIGSSATPIGNPQNLVIAV--QSKIPFGKFLIGILPAMFVGVAVNALIL 199 (547)
Q Consensus 139 ~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~--~~~~~f~~f~~~~lp~~iv~~~v~~~~~ 199 (547)
.||.+.+....+++|+|+.+||+|+|+|.++.. ..|++|.|++....|..++.+++...+.
T Consensus 121 ~d~i~~~ai~~~aa~iG~~as~in~~~~~~ig~~~~~Gi~f~~~l~~rip~~~v~l~v~~~~v 183 (430)
T TIGR00770 121 IKPERPLSLAVVSSQIAITASPVSAAVVFMSAILEPLGIEYLDLLMVTIPSTFLGCMLTAFFV 183 (430)
T ss_pred CCChhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999889999999999999999988877753 2489999999999999988877765543
No 34
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.75 E-value=3.4e-15 Score=158.68 Aligned_cols=161 Identities=16% Similarity=0.280 Sum_probs=128.3
Q ss_pred CCCccchHHHHHHHHHHHHH-HHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-CCchhHHHH
Q 009002 28 VPFLPIGRTAGSLLGAMLMV-IFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKS-RGPKDLLCR 105 (547)
Q Consensus 28 ~~~~pi~~~~~al~~~~~l~-l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~-~~~~~ll~~ 105 (547)
...+.++ ...=+|...+. .+|. +|.+ .++++++++++++++++++++||..|++.+++.+.. ++|++...
T Consensus 19 ~ggig~g--~~gg~g~~il~~~~~~-~p~~----~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~i~l- 90 (443)
T PRK12489 19 YGGIGLG--LLGGIGLVILVFVFGL-PPGK----PPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKYITI- 90 (443)
T ss_pred hhhhHHH--HHHHHHHHHHHHHcCC-CCCC----CcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhHHHH-
Confidence 4444454 32333333333 3454 4433 799999999999999999999999999999888764 46777776
Q ss_pred HHHHHHHHhhhchhhH-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee---ec----CCCCh
Q 009002 106 ICLISAISSALFTNDT-SCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA---VQ----SKIPF 177 (547)
Q Consensus 106 i~~~~~~lS~flsN~~-~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~---~~----~~~~f 177 (547)
+..++..+++|++|++ ++..++|++.++|++.|++|++.+.+.++++.+|..+||++..+|.++. +. .++++
T Consensus 91 lap~vt~l~afl~~Tg~~v~~~lPVi~~vA~k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l~~~l~~~~~~~~g~~~ 170 (443)
T PRK12489 91 LAPFVTYTLTFLCGTGHVVYSILPIIYDVALKNGIRPERPMAAASVASQMGITASPVSAAVVSLVAMLGNVTGEGRHITL 170 (443)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCCcCH
Confidence 5555666669999998 6999999999999999999999999999999999999999988887732 21 46899
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 009002 178 GKFLIGILPAMFVGVAVNA 196 (547)
Q Consensus 178 ~~f~~~~lp~~iv~~~v~~ 196 (547)
+|+...++|..++++++..
T Consensus 171 f~il~VgIP~~~ig~l~~~ 189 (443)
T PRK12489 171 LDILAVTIPATLIGVLAAA 189 (443)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877543
No 35
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=99.74 E-value=1.1e-16 Score=171.38 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHHHHc---cCChHHHHhc-----CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHH
Q 009002 33 IGRTAGSLLGAMLMVIFQ---VITPDQAYAA-----IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLC 104 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~g---v~~~~~a~~~-----~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~ 104 (547)
.+.+.+++.|+.++++++ -.++|++++. ++|+++ +.|+|+++++++++|+++.+++++....++.. ..
T Consensus 318 l~~a~VaLiga~vill~~~~~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~~--~~ 393 (513)
T PRK09547 318 LHLAEVGLIGLSVIILATAFTGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHAQ--LS 393 (513)
T ss_pred HhHHHHHHHHHHHHHHhhcccCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCh--HH
Confidence 345678999998877776 5889999988 999999 99999999999999999999999987766543 66
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCC-Cc---hHHHHHHHHHHhhhccccccCcccchhee-e---c-CCC
Q 009002 105 RICLISAISSALFTNDTSCVVLTEFVLKIARQHNL-PP---HPFLLALASSANIGSSATPIGNPQNLVIA-V---Q-SKI 175 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~-~p---~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~-~---~-~~~ 175 (547)
.+...++++|+++||++.+.+++|++.+.+ +.|. ++ .++.++++.++|+||.+||+|..+|+++. + + ..+
T Consensus 394 ~~~~~sgllSaiiDNVp~~~~~ip~v~~~~-~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~~~~~~g~~i 472 (513)
T PRK09547 394 LFYIANGLLSSISDNVFVGTVYINEAKAAL-ESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRL 472 (513)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHH-hcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHhCCCcc
Confidence 778889999999999999999999999998 7776 33 58899999999999999999999999887 3 2 248
Q ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHH
Q 009002 176 PFGKFLIGILPAMFVGVAVNALILLT 201 (547)
Q Consensus 176 ~f~~f~~~~lp~~iv~~~v~~~~~~~ 201 (547)
+|.||++.++|.+++..+++.+++.+
T Consensus 473 sf~~~~k~glP~tlv~~~v~~~~v~~ 498 (513)
T PRK09547 473 SYGRMVWMALPYTIVLTLVGLLAVEF 498 (513)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887665443
No 36
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.6e-16 Score=168.49 Aligned_cols=186 Identities=24% Similarity=0.362 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHH----HHhcCChhHHHHHHHHHHHHHHHHHhcHHH
Q 009002 11 LGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQ----AYAAIDLPILGLLFGTMVVSVYLESADMFK 86 (547)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~----a~~~~~~~~i~~l~~~~il~~~l~~sG~~~ 86 (547)
+...+++.+++...+. +.++++.+..++.++..+++..-.++++ ++++.+|+++++++||++++.+++++|+.+
T Consensus 226 ~~~~vl~~vli~f~~~--~~~~i~~~~val~~a~ill~~~~~~~~~~~~~il~~v~W~~l~Ff~Glfi~V~gl~~~Gv~~ 303 (424)
T COG1055 226 LSLVVLALVLIAFLLL--PFLGIPVSLVALVGAAILLLLARLSPRESVNKILRGVEWSTLLFFIGLFIVVGGLENAGVTE 303 (424)
T ss_pred HHHHHHHHHHHHHHhh--cccCCCHHHHHHHHHHHHHHHhccCcchhHHHhhhcCChHHHHHHHHHHHHHHHHHHcChHH
Confidence 3344555555544443 3445555688999998888877789988 999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCccc
Q 009002 87 YLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQ 165 (547)
Q Consensus 87 ~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~ 165 (547)
.+++.+....+ +.......+.++++++|+++||.|+++++.|++-+........ .+++++++++|++||..||||+.+
T Consensus 304 ~la~~l~~~~~~~~~~~~~~~~~~s~~lSsv~~NvP~vl~~~~~i~~~~~~~~~~-~~lw~A~a~Ga~lGgnlT~IGs~A 382 (424)
T COG1055 304 DLASVLKALSSGGLAAATLGIGWLSGLLSSVLDNVPTVLTFAPIIKGLAANGMGK-EPLWLALALGADLGGNLTPIGSAA 382 (424)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccccch-HHHHHHHHHhCccccchhhhhhHH
Confidence 99999887665 4677788889999999999999999999999998877665444 688999999999999999999999
Q ss_pred chheee----c-CCCChHHHHHhHHHHHHHHHHHHHHHH
Q 009002 166 NLVIAV----Q-SKIPFGKFLIGILPAMFVGVAVNALIL 199 (547)
Q Consensus 166 Nliv~~----~-~~~~f~~f~~~~lp~~iv~~~v~~~~~ 199 (547)
|+++.+ + .+++|.+|+|.+.|..+..+++...++
T Consensus 383 nlv~~~i~~~~g~~is~~~f~k~g~~i~~~~l~i~~~~l 421 (424)
T COG1055 383 NLVWLGVLERKGVPISFGEFFKVGIIVTLPSLFITLLYL 421 (424)
T ss_pred HHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998873 2 348999999999999888777655443
No 37
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=99.73 E-value=1e-16 Score=170.06 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=139.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHH
Q 009002 370 LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVIL 449 (547)
Q Consensus 370 i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~ 449 (547)
.|..+++++++.++.+++..+.+|+++++||+++++++|+|+++.+++++|+.+++++.+.+..+ ++......++.++.
T Consensus 11 ~~~~~~a~~~~~ll~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~-~~~~l~~~~~~~~~ 89 (384)
T cd01117 11 LDRWAIALLGAALMLLFGVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAG-SPRRLLFLLVLLSG 89 (384)
T ss_pred CCHHHHHHHHHHHHHHhCCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 57778888888888889999999999999999999999999999999999999999999765432 22223345567889
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHh
Q 009002 450 VLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLK 529 (547)
Q Consensus 450 ~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k 529 (547)
++|.++||+++++++.| +....++..+.++....+..+++++.||++||+|+++|+++++. ++ ++|.||+|
T Consensus 90 ~ls~~~~n~~~~~~~~P-i~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~------~~--i~~~~~~~ 160 (384)
T cd01117 90 ILSALLTNDTACLVFTP-IVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASE------SG--ISFPFFLA 160 (384)
T ss_pred HHHHHHhhHHHHHHHHH-HHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcC------CC--CCHHHHHH
Confidence 99999999999999999 66788888888887677777888899999999999999998762 34 47999999
Q ss_pred hhhHHHHHHHHHHhhh
Q 009002 530 FGVPSTLIVTAIGLPL 545 (547)
Q Consensus 530 ~G~p~~li~~iv~~~~ 545 (547)
.|+|.+++.+++..+.
T Consensus 161 ~~~p~~i~~~~~~~~~ 176 (384)
T cd01117 161 AMAPLALLGLLLLLIL 176 (384)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999988766543
No 38
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.69 E-value=8.2e-16 Score=161.28 Aligned_cols=169 Identities=18% Similarity=0.258 Sum_probs=142.8
Q ss_pred hCCcHHHHHHHHHHHHHHh-----cCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHH
Q 009002 368 MGLNMSWTAITAALALVVL-----DFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIA 442 (547)
Q Consensus 368 ~gi~~~~~al~~a~~l~~~-----~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~ 442 (547)
.+.+....+..++.++..+ +..+.+|.++.+||++++++.|++. ++++++||..|++++++.+..+.++.....
T Consensus 16 ~~~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~~~l~~ 94 (351)
T PF03600_consen 16 KKIPVVAAALLGALLVALFGFPGFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKPWRLLL 94 (351)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCHHHHHH
Confidence 4578878888888888877 7778899999999999999999999 999999999999999998765533323345
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCcee
Q 009002 443 VLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTL 522 (547)
Q Consensus 443 ~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i 522 (547)
.++.++.++|.+.||+++++++.| +....++..+.++...++.+++++++||..||+|+++|+++.+ ..++++
T Consensus 95 ~~~~~~~~lS~~~~N~~~v~~~~P-i~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~------~~~~~~ 167 (351)
T PF03600_consen 95 LLMLVTALLSAFLDNTTVVLIMIP-IVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIAN------ASGLPF 167 (351)
T ss_pred HHHHHHHHHHHhhhcchHHHhhHH-HHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhh------hccccc
Confidence 666789999999999999999999 6788899899998877778899999999999999999999855 257753
Q ss_pred ehhhhHhhhhHHHHHHHHHHhh
Q 009002 523 SFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 523 ~f~df~k~G~p~~li~~iv~~~ 544 (547)
...||++.++|..++.+++..+
T Consensus 168 ~~~~~~~~~~p~~i~~~~~~~~ 189 (351)
T PF03600_consen 168 FGFDFFALGLPAVIVGLLVLIF 189 (351)
T ss_pred chhhhHhhhHHHHHHHHHHHHH
Confidence 3499999999999888776543
No 39
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=99.67 E-value=6.7e-16 Score=164.35 Aligned_cols=166 Identities=23% Similarity=0.318 Sum_probs=139.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHH
Q 009002 370 LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVIL 449 (547)
Q Consensus 370 i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~ 449 (547)
+|..+.++.++.++.+++..+.+|++++++|+++++++|++.++.++++||+.+++++.+.+..+.+... ...+..++.
T Consensus 9 ~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~~-~~~~~~~~~ 87 (396)
T cd00625 9 LPRAVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRRL-LLLLMLLTA 87 (396)
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCchH-HHHHHHHHH
Confidence 6889999999999889999999999999999999999999999999999999999999996544322222 445566788
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhH
Q 009002 450 VLSNLASNVPTVLLLGGRVAASAAAISAADE-KKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHL 528 (547)
Q Consensus 450 ~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~-~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~ 528 (547)
++|+++||+++++++.| +....++..|.++ ....+..+++++.||+.||+|+++|+++++ .++ ++|.||+
T Consensus 88 ~ls~~~s~~~~~~il~P-i~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~------~~~--i~~~~~~ 158 (396)
T cd00625 88 ALSAFFSNDATAVLLTP-IVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIAS------LSG--LGFLDFL 158 (396)
T ss_pred HHHHHHhchhhhhhhHH-HHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEe------CCC--CCHHHHH
Confidence 99999999999999999 5677777788887 556666778888999999999999999876 134 4699999
Q ss_pred hhhhHHHHHHHHHHhhh
Q 009002 529 KFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 529 k~G~p~~li~~iv~~~~ 545 (547)
|.|.|.+++..++...+
T Consensus 159 ~~~~~~~i~~~~~~~~~ 175 (396)
T cd00625 159 AFMAPPALGLLLLLLGL 175 (396)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999987776654
No 40
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.8e-15 Score=155.92 Aligned_cols=191 Identities=20% Similarity=0.318 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHHHHHhh--cCCCccchHHHHHHHHHHH-HHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhc
Q 009002 7 VKVVLGSIAFAIFWVMAVFP--AVPFLPIGRTAGSLLGAML-MVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESAD 83 (547)
Q Consensus 7 ~k~~~a~~~~~~~~~~~~~~--~~~~~pi~~~~~al~~~~~-l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG 83 (547)
.++....+-|.+++.+.-.- ....++.+ ++|++|+++ +++...-+.+..++.++|.+++++++||++.+++++.|
T Consensus 469 l~k~~~aL~fviv~F~l~svp~~~~gl~Lg--W~AIlgA~llLIl~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lG 546 (685)
T KOG2639|consen 469 LIKCLRALWFVIVCFFLQSVPSLHMGLSLG--WTAILGAILLLILADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLG 546 (685)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHhcCCCcc--HHHHHHHHHHHHHhchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 34555556666655554431 01123454 678887755 45666667777889999999999999999999999999
Q ss_pred HHHHHHHHHHhh---cCCchh---HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHH--HcCCCchHHHHHHHHHHhhh
Q 009002 84 MFKYLGRMLSWK---SRGPKD---LLCRICLISAISSALFTNDTSCVVLTEFVLKIAR--QHNLPPHPFLLALASSANIG 155 (547)
Q Consensus 84 ~~~~ia~~i~~~---~~~~~~---ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~--~~~~~p~~~l~~~a~aa~~G 155 (547)
+.+|+++..... .+..++ .++.+...+++.|+|++|.+...+|.++..++.+ ..|.+..|+.++++++|+.|
T Consensus 547 li~~l~dlte~vil~v~e~~~~~vAi~iilw~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~g 626 (685)
T KOG2639|consen 547 LIEWLGDLTEPVILSVGESYRLMVAIVIILWVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLG 626 (685)
T ss_pred HHHHHHHhhhHHhhhcchhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhc
Confidence 999999865432 222222 3345566889999999999999999999999876 46888889999999999999
Q ss_pred ccccccCcccchheee---cC--CCChHHHHHhHHHHHHHHHHHHHHHH
Q 009002 156 SSATPIGNPQNLVIAV---QS--KIPFGKFLIGILPAMFVGVAVNALIL 199 (547)
Q Consensus 156 g~~TpiG~p~Nliv~~---~~--~~~f~~f~~~~lp~~iv~~~v~~~~~ 199 (547)
|..|++|.++|.+.+. +. +++|.+|++.|+|..+..+.++.+|+
T Consensus 627 GNgTLiGasANvv~A~iAeqHGYkltF~~fF~~GfPmml~si~i~t~yL 675 (685)
T KOG2639|consen 627 GNGTLIGASANVVAAGIAEQHGYKLTFTQFFKVGFPMMLGSITIGTVYL 675 (685)
T ss_pred CCceeechhhHHHHHHHHHHcCceEEehhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999998863 33 46889999999999988877765544
No 41
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=99.59 E-value=3.5e-11 Score=129.52 Aligned_cols=346 Identities=12% Similarity=0.115 Sum_probs=217.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHH---hhcCCchhHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHHHHcCC
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLS---WKSRGPKDLLCRICLISAISSALFTNDTSCV-VLTEFVLKIARQHNL 139 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~---~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~-i~~Pi~~~ia~~~~~ 139 (547)
..-..++..+..+..++++|.-+.+-+... ++.|+|+.++..-++++.++|.++.|..... .+.-+.+.+.++.|+
T Consensus 78 ~lGl~Im~~~gFa~yM~~iGa~~~lv~l~~~pl~~ir~p~~~l~~~~l~~~~~~~~i~Sa~glg~~lm~~l~Pvl~~~Gv 157 (455)
T PRK10654 78 DLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGI 157 (455)
T ss_pred cHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCC
Confidence 344557778888999999999999887554 4556788888888889999999998876644 444555666788999
Q ss_pred CchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhh
Q 009002 140 PPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLI-GILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATA 218 (547)
Q Consensus 140 ~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~-~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~ 218 (547)
+|. ..-+ ..++..|...+|..+.+| +..+..|.+..|++. .-+|..+..+++.. . .-++|...-+|++.. .+
T Consensus 158 ~~~-~aa~-v~~~~~g~~~~P~s~~~~-laA~~~g~~~~~~~~~~~~p~~i~~~i~~~-i-~~~~~~~~~dkk~~~--~~ 230 (455)
T PRK10654 158 SRG-AAAA-ICASPAAIILSPTSGDVV-LAAEASEMPLIDFAFKTTLPISIAAIIGMA-I-AHFFWQRYLDKKENI--SH 230 (455)
T ss_pred CHH-HHHH-HHHHHhcccCCCCcchHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHhHHHHhhccc--cc
Confidence 886 3223 477777888999887776 466777888888875 45676666554322 1 223332222221100 00
Q ss_pred hHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhhc
Q 009002 219 EVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARITN 298 (547)
Q Consensus 219 ~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (547)
++ + +.+
T Consensus 231 -----~~-----------------------------------------~---~~~------------------------- 236 (455)
T PRK10654 231 -----EM-----------------------------------------L---DVS------------------------- 236 (455)
T ss_pred -----cc-----------------------------------------c---ccc-------------------------
Confidence 00 0 000
Q ss_pred ccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH--
Q 009002 299 ESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMGLNMSWTA-- 376 (547)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~gi~~~~~a-- 376 (547)
+. ++....+...++... ++..++.....+...++..
T Consensus 237 --------------------------------------~~-~~~~p~~yallPllP---Lilll~f~~~~~~~~~v~~~~ 274 (455)
T PRK10654 237 --------------------------------------EI-TTTAPAFYAILPFTP---IIGVLIFDGKWGPQLHIITIL 274 (455)
T ss_pred --------------------------------------hh-ccccccHHHHHHHHH---HHHHHHHhcccchhhhHHHHH
Confidence 00 000012222221111 1111111111122222222
Q ss_pred ---HHHHHHHHHhcCCChHHHHhhcCh----------hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHH
Q 009002 377 ---ITAALALVVLDFKDARPSLEKVSY----------SLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAV 443 (547)
Q Consensus 377 ---l~~a~~l~~~~~~~~~~~~~~idw----------~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~ 443 (547)
+..+.+.-..++.+.||.++.+++ +++.++.+.-+++.+++.+|+.|.+.+.+.+.. .+......+
T Consensus 275 ~~s~~i~~~~~~~r~~~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~lg-~~~~~illv 353 (455)
T PRK10654 275 VICMLLAAVLEFLRSFNTKKVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSFG-SAGIILMLV 353 (455)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcC-CChHHHHHH
Confidence 222222223477888999888888 589999999999999999999999999987652 222222334
Q ss_pred HHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCcee
Q 009002 444 LAAVILVLSNLA-SNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTL 522 (547)
Q Consensus 444 l~~v~~~lS~~i-sN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i 522 (547)
+..++.+.+... ||+++..++.| +....+++.|.||..........++.|.+..|++ .++++..- -+||
T Consensus 354 ~~il~~l~~~~~GSg~a~~~af~p-i~~pia~~lG~~pv~~~~~~~~~~~~G~~~sPvs--~~ii~~ag-----~a~~-- 423 (455)
T PRK10654 354 LVILTMLAAITTGSGNAPFYAFVE-LIPKLAHSSGINPAYLTIPMLQASNLGRTISPVS--GVVVAVAG-----MAKI-- 423 (455)
T ss_pred HHHHHHHHHHHccchHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcch--hhHhhhhc-----ccCC--
Confidence 445666678888 89999999999 6678888999998655455566677888887876 33443321 2577
Q ss_pred ehhhhHhhhhHHHHHHHHHHh
Q 009002 523 SFWNHLKFGVPSTLIVTAIGL 543 (547)
Q Consensus 523 ~f~df~k~G~p~~li~~iv~~ 543 (547)
+..|+.|.+.+.+++.+++..
T Consensus 424 ~~~~ivKrt~ip~ii~~iv~~ 444 (455)
T PRK10654 424 SPFEVVKRTSVPVLVGLLIVI 444 (455)
T ss_pred CHHHHHHhhhHHHHHHHHHHH
Confidence 589999998877777776655
No 42
>PLN00137 NHAD transporter family protein; Provisional
Probab=99.57 E-value=6.2e-14 Score=150.17 Aligned_cols=154 Identities=20% Similarity=0.223 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHH-----------ccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHH
Q 009002 36 TAGSLLGAMLMVIF-----------QVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLC 104 (547)
Q Consensus 36 ~~~al~~~~~l~l~-----------gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~ 104 (547)
...++.++.++++. |+.+++|+++.+||+++++++|+|+++++++++|+.+++++.+....+++.
T Consensus 251 ~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l~~Vdw~tLlfF~GlFilvgal~~tG~~~~la~~l~~~~~~~~---- 326 (424)
T PLN00137 251 YMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRIDTQGILFFLGILLSVGSLDAAGILRELANYLDANIPNVE---- 326 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHhCCccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCch----
Confidence 35567666655553 348889999999999999999999999999999999999998865544432
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHh
Q 009002 105 RICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPP-HPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIG 183 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p-~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~ 183 (547)
.+...++++|+++||.|.++.+.|+.. ..+.++ .+.++++++++++||..|+||..+|+++++..+-+|.-+++.
T Consensus 327 ~i~~~s~ilS~~IsNVP~~~~~~p~~~----~~~~~~~~~~w~aLalga~lGGn~tliGS~Anvi~~~~~~~~~~~~~~~ 402 (424)
T PLN00137 327 LIASAIGVASAIIDNVPLVAATMGMYD----LTDYPMDSELWQLIALCAGTGGSLLVIGSAAGVAFMGMEKVDFFWYLRK 402 (424)
T ss_pred hHHHHHHHHHHHhcchHHHHHHhhhhh----hccCCcchHHHHHHHHHhCccchHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 366788899999999999999999987 233332 578899999999999999999999999886554444433444
Q ss_pred HHHHHHHHHHHHHH
Q 009002 184 ILPAMFVGVAVNAL 197 (547)
Q Consensus 184 ~lp~~iv~~~v~~~ 197 (547)
.-|..++|.+.+++
T Consensus 403 ~~~~~~~~~~~~~~ 416 (424)
T PLN00137 403 VSGFAFAGYVAGIA 416 (424)
T ss_pred hhHHHHHHHHHHHH
Confidence 55677777776654
No 43
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.5e-14 Score=153.39 Aligned_cols=146 Identities=15% Similarity=0.151 Sum_probs=131.0
Q ss_pred cCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 009002 51 VITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLTEF 129 (547)
Q Consensus 51 v~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi 129 (547)
..++++.-+.+.|+.+++++|.+.++.+.++||+.+++|+.+.+..+ +.+.+.+.+++++.+++.|.||++++.+++|+
T Consensus 421 l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~TeF~Sntata~IfiPI 500 (586)
T KOG1281|consen 421 LGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVVTEFVSNTATASIFIPI 500 (586)
T ss_pred ccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHhcchhheeehHHh
Confidence 34555655679999999999999999999999999999999988544 34777888899999999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHH
Q 009002 130 VLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNAL 197 (547)
Q Consensus 130 ~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~ 197 (547)
+..++++.+.+|..+++|.++++++ +++.|+++|||.++.+.+++.-.|+.+.|+.+.+.+.+....
T Consensus 501 l~ela~~l~~hplyl~lp~tl~~Sf-Af~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i~~~a~l~~ 567 (586)
T KOG1281|consen 501 LAELAEALGIHPLYLMLPTTLACSF-AFMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNIGGPAILLL 567 (586)
T ss_pred HHHHHHhcCCCCceeehhHHHHHHH-HHhcCCCCCCCeEEEeecccchhhHhhhccchhHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999999999999999888777665433
No 44
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=99.51 E-value=2.9e-13 Score=144.90 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHc------------cCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhH
Q 009002 35 RTAGSLLGAMLMVIFQ------------VITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDL 102 (547)
Q Consensus 35 ~~~~al~~~~~l~l~g------------v~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~l 102 (547)
...+++.++.++.+++ ..+++|+++.+||+++++++|+|+++.+++++|+.+.+++.+....++. ..
T Consensus 245 ~~~~al~~~~~lll~~~~l~~~~~~~~~~~~~~~~l~~VDw~tLlfF~GlFilvg~l~~~G~l~~la~~l~~~~~~~-~~ 323 (420)
T TIGR00775 245 PFMGALLGLGLVWLFSDWIHSPHGEKRLHLRVPHILTRIDISSLTFFIGILLAVNALSLLGYLEDVSNVMDTQFSRN-WA 323 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCHHHHHHhCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc-hH
Confidence 3477888887777765 3557899999999999999999999999999999999999887544332 11
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHH
Q 009002 103 LCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLI 182 (547)
Q Consensus 103 l~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~ 182 (547)
...++++|+++||.|.++.++|+.-. +. ..+.++++++++++||..|+||..+|+.+.+..+.+|.-|++
T Consensus 324 ----~~~s~i~S~~IdNVP~va~~i~l~~~-----~~-~~~~w~aLalga~lGGn~tlIGS~Anvv~~~~~~~~~~~~~~ 393 (420)
T TIGR00775 324 ----AVMVGLLSSVLDNVPLVAATLGMYPL-----PM-SDGLWKLIAYTAGTGGSILIIGSAAGVALMGAEKVQFTWYFK 393 (420)
T ss_pred ----HHHHHHHHHHhccHHHHHHHHHhccc-----cC-chHHHHHHHHHHCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999743 12 457888999999999999999999999877766666664444
Q ss_pred hHHHHHHHHHHHHHH
Q 009002 183 GILPAMFVGVAVNAL 197 (547)
Q Consensus 183 ~~lp~~iv~~~v~~~ 197 (547)
..=...+++...++.
T Consensus 394 ~~~~~~~~~~~~~~~ 408 (420)
T TIGR00775 394 HLSWIALASYFGGLV 408 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333355566555543
No 45
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=99.48 E-value=1.3e-10 Score=123.18 Aligned_cols=347 Identities=11% Similarity=0.075 Sum_probs=212.5
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHhhhchhhHHH-HHHHHHHHH
Q 009002 57 AYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKS---RGPKDLLCRICLISAISSALFTNDTSC-VVLTEFVLK 132 (547)
Q Consensus 57 a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~---~~~~~ll~~i~~~~~~lS~flsN~~~v-~i~~Pi~~~ 132 (547)
.+++--.++-.+++..+.-...++++|.+|.+.+.+.|.. ++|..++....+++.+++-+.+..++. ++..|-.+.
T Consensus 14 ~~~~~~~~~g~~i~~~~gf~~~M~~~G~~~~lv~~~~k~~~~~~~p~~v~~~t~~i~~~~~l~~~sat~~~li~~~~l~P 93 (388)
T TIGR00771 14 MLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFP 93 (388)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 3444455667778888889999999999999999887653 468888889999999999999999998 899999999
Q ss_pred HHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009002 133 IARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGK-FLIGILPAMFVGVAVNALILLTMYWKLLNSHK 211 (547)
Q Consensus 133 ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~-f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~ 211 (547)
+-++.|++|.-.. + ..+++.|-..+|-|.+++ ......|.+..| |+...+|..+.+++..... .++..| ..+|+
T Consensus 94 ~l~~~G~~~~~aa-a-via~~~~l~i~P~~~~~~-~aa~~~~~~~~~~~~~~~ip~~i~~i~~~~~~-~~~~~k-~~~kr 168 (388)
T TIGR00771 94 TLVSLGVSRLSAV-A-VMASPGSIHSAMISEMSG-LAAQQVNMSHAPYNFHYMLPGAIGAIILTAIA-HFFKQR-GEDKK 168 (388)
T ss_pred HHHHcCCCHHHHH-H-HHHhhhcccCCCcchHHH-HHHHHhCCCHHHHHHHhHHHHHHHHHHHHHHH-HHHHhc-ccchh
Confidence 9999999986544 2 233332336677776644 344446789999 5566678777666553322 222111 11110
Q ss_pred cchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcc
Q 009002 212 DEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTF 291 (547)
Q Consensus 212 ~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 291 (547)
+ . +..|++ ..
T Consensus 169 ~-~-----~~~~~~----------------------------------------------~~------------------ 178 (388)
T TIGR00771 169 Q-A-----YIAHEK----------------------------------------------ES------------------ 178 (388)
T ss_pred c-c-----cccccc----------------------------------------------cc------------------
Confidence 0 0 000000 00
Q ss_pred hhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhC--
Q 009002 292 ESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMG-- 369 (547)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~g-- 369 (547)
. ++. ..+ ++.++..+. ++..+++..+.|
T Consensus 179 --------------------~-----------------------~~~----~~~-~~~~~allp--l~p~iil~l~~g~~ 208 (388)
T TIGR00771 179 --------------------E-----------------------IKV----IEG-VPVLYAILP--LIPLIILLLFIGGT 208 (388)
T ss_pred --------------------c-----------------------chh----hcc-cchHHHHHH--HHHHHHHHHHhccc
Confidence 0 000 000 011111111 111111112222
Q ss_pred ----CcHHHHHHHHHHH-----HHHhcCCChHHHHh----------hcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhh
Q 009002 370 ----LNMSWTAITAALA-----LVVLDFKDARPSLE----------KVSYSLLIFFCGMFITVDGFNKTGIPSALWEFME 430 (547)
Q Consensus 370 ----i~~~~~al~~a~~-----l~~~~~~~~~~~~~----------~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~ 430 (547)
.|....+.++... ..+.+..+.++..+ +..-.++..+.+-.+.+..++.+|..|.+++++.
T Consensus 209 t~~~~~~~~~~~v~v~~~~~l~~~~~r~~n~~~~~~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~ 288 (388)
T TIGR00771 209 GLQQVPLHEWTKMGVPQAMLIGAEFGRIVNRISPVKITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAK 288 (388)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3334444444222 22334444444331 1233467778888889999999999999999997
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHH
Q 009002 431 PYAEIDHVGGIAVLAAVILVLSNLA-SNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVC 509 (547)
Q Consensus 431 ~~~~~~~~~~~~~l~~v~~~lS~~i-sN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~ 509 (547)
+.. .++........+...+++-++ |+.|....+.| +...++++.|.||.............|-...|+| .|+.+.
T Consensus 289 ~~~-~~~~~~ll~~~l~~~~lg~~~~s~~a~~~~~~P-Il~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~--~~l~v~ 364 (388)
T TIGR00771 289 ESG-LGNIFVMWGATIGPFLMALITGSGNAPFIAFNT-AIPPHAVELGYTHVNLGMPMAIAGALGRTASPIA--GVVVVC 364 (388)
T ss_pred HcC-CCHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHH--HHHHHH
Confidence 652 222222333344555678899 68999999999 5567788889997654444555566777777888 444443
Q ss_pred hccccCCCCCceeehhhhHhhhhHHHHHHH
Q 009002 510 EQAHRAPHLGYTLSFWNHLKFGVPSTLIVT 539 (547)
Q Consensus 510 ~~~~~~~~~gy~i~f~df~k~G~p~~li~~ 539 (547)
.-. .| ++..|..|.-+|.++..+
T Consensus 365 ~gi-----a~--v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 365 AGL-----AM--VSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred Hhh-----cC--CCHHHHHHHHHHHHHHhc
Confidence 311 23 368999999999988654
No 46
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=99.41 E-value=3.2e-12 Score=134.18 Aligned_cols=151 Identities=12% Similarity=0.149 Sum_probs=116.7
Q ss_pred HhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHH-HHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHH
Q 009002 385 VLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALW-EFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLL 463 (547)
Q Consensus 385 ~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia-~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~l 463 (547)
.+|..+++++++++.-++.++|.|+|+++++..++|+.++++ +.+.+. + +...-.+.+++.++++|.|+||++++++
T Consensus 77 ~iG~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll~i-~-Sk~~L~l~f~laaafLSaFLsnttvtAv 154 (515)
T TIGR00774 77 AIGMTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGI-R-SKTLLSLAFCFAAAFLSAFLDALTVVAV 154 (515)
T ss_pred HHCCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357789999999999999999999999999999999999999 666554 3 3333345667789999999999999999
Q ss_pred HHHHHHHHH------------HHhhcCCchH-------------------HHHHHHHHHHhhcChhhhhhhhhHHHHhcc
Q 009002 464 LGGRVAASA------------AAISAADEKK-------------------AWLILAWVSTVAGNLSLVGSAANLIVCEQA 512 (547)
Q Consensus 464 l~P~ia~~~------------a~~~~~~~~~-------------------~~~~l~~~~~~gg~~TpiGs~aNliv~~~~ 512 (547)
++| ++... .+..+.+++. ..+-.++++++||.+||+|.+.|+++.+.+
T Consensus 155 mIp-Vavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~ 233 (515)
T TIGR00774 155 VIS-VAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQA 233 (515)
T ss_pred HHH-HHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHh
Confidence 999 56666 3222222222 344577889999999999999999999864
Q ss_pred ccCCCCCceee--hhhhHhhhhHHHHHHHHHHhh
Q 009002 513 HRAPHLGYTLS--FWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 513 ~~~~~~gy~i~--f~df~k~G~p~~li~~iv~~~ 544 (547)
|..+. |.++.++++|..++.++.+.+
T Consensus 234 ------g~~F~~FF~~m~Pv~LP~lIilll~~~l 261 (515)
T TIGR00774 234 ------GWLFGEFFLRMSPVTLPVFICGLLTCAL 261 (515)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345 777788888877766655544
No 47
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=99.41 E-value=1.1e-11 Score=133.64 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChH----HHH----hcCChhHHHHHHHHHHHHHHHH
Q 009002 9 VVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPD----QAY----AAIDLPILGLLFGTMVVSVYLE 80 (547)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~----~a~----~~~~~~~i~~l~~~~il~~~l~ 80 (547)
.+++++..+.+.++..+.. ++. ...++.+..+.++.+..+++ ++. +.++|.++++.+|+| +.+++
T Consensus 231 ~~~~Ll~~l~viv~~~~~~---~~~--~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf--~~~l~ 303 (431)
T TIGR00784 231 IWFNLLLTISLMVFLVLGT---KHL--SVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVF--TGILS 303 (431)
T ss_pred HHHHHHHHHHHHHHHHhcc---cCH--HHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHH--HHHHh
Confidence 3677776666666555543 233 46667787777777754443 344 456777888888877 99999
Q ss_pred HhcHHHHHHHHHHhhcCC-ch-hHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccc
Q 009002 81 SADMFKYLGRMLSWKSRG-PK-DLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSA 158 (547)
Q Consensus 81 ~sG~~~~ia~~i~~~~~~-~~-~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~ 158 (547)
++|..|.+++.+.+..++ +. .....+.+++.++|.|+||++++..+.|++.+++++.|.+|..+..+..++++. .+.
T Consensus 304 ~~G~i~~la~~l~~~~~~~~~~~~~~i~~~~s~~~s~~~sn~a~~~~l~Piv~~ia~~~G~~~~~l~~a~~i~~~~-~~~ 382 (431)
T TIGR00784 304 GTKMVDAMAGSLVSIIPSSMGGFFPVIVALTSIPFTFVMSNDAYYFGVLPIFAEAASAYGIDPVEIARASIMGQPV-HLL 382 (431)
T ss_pred hcCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc-hhc
Confidence 999999999999876543 32 577788889999999999999999999999999999999998888777777775 779
Q ss_pred cccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHH
Q 009002 159 TPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNAL 197 (547)
Q Consensus 159 TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~ 197 (547)
+|+ +|+|.++++..+++..|+.|.+++....+.++..+
T Consensus 383 SPv-s~~~~l~~~~~~~~~~d~~k~~~~~~~~~~~v~~~ 420 (431)
T TIGR00784 383 SPL-VPSTVLLVGMLGVSLGDHQKFAVKWAVITSIVMTL 420 (431)
T ss_pred CCc-hHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999998887776655433
No 48
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=99.38 E-value=1.5e-11 Score=131.08 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=140.1
Q ss_pred hCCcHHHHHHHHHHHHHHhcCCChHHHHh--hcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHH
Q 009002 368 MGLNMSWTAITAALALVVLDFKDARPSLE--KVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLA 445 (547)
Q Consensus 368 ~gi~~~~~al~~a~~l~~~~~~~~~~~~~--~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~ 445 (547)
.|+|..+.+..||.+++.+|..+.+|+.+ +..|+..++|.|+..++.-++++|+.||+|.++.+..+.+...-...++
T Consensus 18 ~~l~~~~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~~a~~a~g~~~rLf~~v~ 97 (423)
T PF02040_consen 18 RGLPEAVWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALHAARWARGSGRRLFLLVY 97 (423)
T ss_pred CCCChHHHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHH
Confidence 47999999999999999999999998865 5889999999999999999999999999999998776543333333556
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCch--HHHH-HHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCcee
Q 009002 446 AVILVLSNLASNVPTVLLLGGRVAASAAAISAADEK--KAWL-ILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTL 522 (547)
Q Consensus 446 ~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~--~~~~-~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i 522 (547)
.++.+.|.|.||-+++.++.|+ ....++..+.++. .++. ...+.++.+++.-|++-++|++.++ .+.+
T Consensus 98 ll~~~vTaflsND~talilTPi-vla~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSNltNLv~~~--------~~~~ 168 (423)
T PF02040_consen 98 LLGAVVTAFLSNDATALILTPI-VLALARRLGLNPKPPLPFLFACAFIANTASLLLPVSNLTNLVAAD--------AFGI 168 (423)
T ss_pred HHHHHHHHHHhccchhhhhHHH-HHHHHHHcCCCcccchHHHHHHHHHhhhhhccccccCcHHHHHHH--------ccCc
Confidence 7889999999999999999994 4666777777652 2443 4567799999999999999999987 4456
Q ss_pred ehhhhHhhhhHHHHHHHHHHhhh
Q 009002 523 SFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 523 ~f~df~k~G~p~~li~~iv~~~~ 545 (547)
+|.||.+.-.+.++..++++..+
T Consensus 169 ~f~~y~~~m~~P~l~ai~~t~~v 191 (423)
T PF02040_consen 169 SFLEYAAVMALPSLAAIAVTYLV 191 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888776654
No 49
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=99.30 E-value=1.3e-08 Score=110.77 Aligned_cols=141 Identities=12% Similarity=0.019 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCC-chhHHHHHHH-HHH-HHhhhchhhHHHHHHHHHHHHHHHHcCCC
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRG-PKDLLCRICL-ISA-ISSALFTNDTSCVVLTEFVLKIARQHNLP 140 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~-~~~ll~~i~~-~~~-~lS~flsN~~~v~i~~Pi~~~ia~~~~~~ 140 (547)
+.+++++...-..+.++++|..|..-+.+.|..++ +..++..++. +.. ..+..+.+.+ +.+.|+.+.++.+.|.|
T Consensus 79 ~ii~~I~~igG~~~vm~~tGA~~~~v~~l~k~l~~~~~~~I~i~~~~f~~~~~~~g~~~~~--i~~~~il~pi~~alG~d 156 (465)
T PF03606_consen 79 GIIFFIMIIGGFFGVMNHTGAIDALVNLLIKPLKGKKNPLIPILMFFFSGGGLTIGIPEEA--IAFMPILIPILIALGYD 156 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHcCCC
Confidence 34556666667788899999999999998877654 3344333332 222 2334444444 88999999999999999
Q ss_pred chHHHHHHHHHHhhhccccccCcccchhee-ecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009002 141 PHPFLLALASSANIGSSATPIGNPQNLVIA-VQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLL 207 (547)
Q Consensus 141 p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lL 207 (547)
+..-. +..+.+...|+.+|..||-|..+. +-.|++..+++.....+..+..++...+..++.+|..
T Consensus 157 ~~~a~-a~v~~~~~~g~~~~~~npf~~~iAq~iaglp~~sg~~~r~i~~~i~~~i~~~~~~~ya~kv~ 223 (465)
T PF03606_consen 157 PITAA-AAVILGAGAGFAGPPSNPFTVGIAQKIAGLPLFSGFWFRQIPFVIFTLIAIAYVHRYAQKVK 223 (465)
T ss_pred HHHHH-HHHHHHHHHhhcCCccChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75443 444555556889999999877665 5678999998876665555555555555555444433
No 50
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=99.28 E-value=2.8e-10 Score=121.96 Aligned_cols=144 Identities=18% Similarity=0.246 Sum_probs=122.7
Q ss_pred HccCChHHHHhcCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHH
Q 009002 49 FQVITPDQAYAAID------LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTS 122 (547)
Q Consensus 49 ~gv~~~~~a~~~~~------~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~ 122 (547)
.+..+++|..+.++ +..++.+++...++..++++|+.|.+++.+.....++...++.+.++..+++++++|+++
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~~~~~~~~~~li~~~~~ilg~~~~~~a~ 319 (405)
T TIGR00786 240 YRELTLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAISSPIVFLIMINILLLIVGMFMDLTPA 319 (405)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHhcccHHHH
Confidence 46789998888776 577888889999999999999999999998876545666667778888899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccc-cCcccchheeecCCCChHHHHHhHHHHHHHHHHH
Q 009002 123 CVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATP-IGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAV 194 (547)
Q Consensus 123 v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~Tp-iG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v 194 (547)
.+++.|++..++++.|+||..+.+...+++++ |++|| +|.+.+ +..+..++++.|+.|.++|..++.+++
T Consensus 320 ~~i~~PI~~p~a~~~Gv~p~~~~~~~~~~~~~-g~ltPPvg~~~~-~~~~~~~~~~~~~~k~~~p~~~~~~~~ 390 (405)
T TIGR00786 320 ILILTPILLPVAVHLGIDPVHFGVMFVLNLEI-GLLTPPVGTNLF-VASGVAKMSITEVTRALWPFLLAQFLV 390 (405)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hcCCCCchHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 56775 995444 345778899999999999987766554
No 51
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=99.19 E-value=3.9e-08 Score=100.33 Aligned_cols=342 Identities=17% Similarity=0.221 Sum_probs=200.9
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHc
Q 009002 59 AAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRG-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQH 137 (547)
Q Consensus 59 ~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~ 137 (547)
+......++++++ ..-=..+.++|+||-+-+++.+..|+ |.++.....+++...|-==|.++|-.+-+|-.+.+=++.
T Consensus 55 ~~va~t~imlmFA-ILfFgIM~DsGLFdPli~~il~~~kgdp~kV~igTavla~~v~LDGdGatTflIti~A~LPlYkrL 133 (433)
T COG2851 55 KSVAPTAIMLMFA-ILFFGIMIDSGLFDPLIRKILSIVKGDPVKVVIGTAVLAAVVSLDGDGATTFLITIPALLPLYKRL 133 (433)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhcccchHHHHHHHHHhcCCceeeeHHHHHHHHHhhccCCCceEEEeeHHhHhHHHHHc
Confidence 3344555555555 44456789999999999999988775 666555444444443322223344456777788888899
Q ss_pred CCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 009002 138 NLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDAT 217 (547)
Q Consensus 138 ~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~ 217 (547)
|.+|.-+..-...++.. -..+|=|.|+-= +.+.-|.+-.|.+...+|..++|++..+.+-+++.+|.-+ |-..
T Consensus 134 gmn~~~l~~l~~ls~gv-mN~~PWGGPt~R-aas~Lg~d~~el~~pliP~~i~Gl~~vl~lA~~lG~kErk-Rlg~---- 206 (433)
T COG2851 134 GMNPYLLALLATLSAGV-MNMLPWGGPTAR-AASVLGVDPAELFVPLIPIQIIGLVLVLALAWLLGKKERK-RLGV---- 206 (433)
T ss_pred CCcHHHHHHHHHHhhhh-eecCCCCCcHHH-HHHHhCCCHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHH-Hhhh----
Confidence 99987666555555554 457899988753 4556688889999999999999988766555555443321 1000
Q ss_pred hhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhh
Q 009002 218 AEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARIT 297 (547)
Q Consensus 218 ~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.+.+++ .+ +.-+
T Consensus 207 ------~~~~~~-------~~--------------------------------~~~~----------------------- 218 (433)
T COG2851 207 ------IDLSEE-------LE--------------------------------QLVE----------------------- 218 (433)
T ss_pred ------ccCchh-------hh--------------------------------hccc-----------------------
Confidence 000000 00 0000
Q ss_pred cccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHH
Q 009002 298 NESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGMLVSLLMG-LNMSWTA 376 (547)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~g-i~~~~~a 376 (547)
..++++++.+| .|.+|.=. +++++.+.....| +|+.+..
T Consensus 219 -------------------------------------~~~~~~~~~~r-pkl~W~N~--lLtl~lm~~Lv~gi~p~~~lF 258 (433)
T COG2851 219 -------------------------------------LSEEDQEELKR-PKLFWFNL--LLTLALMGLLVSGIFPPGVLF 258 (433)
T ss_pred -------------------------------------cCCchhhhhhc-cHHHHHHH--HHHHHHHHHHHhcccchhHHH
Confidence 00000000111 12222221 2334444444467 7999999
Q ss_pred HHHHHHHHHhcCCChHHHHhhcC--------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHH--HHHHH
Q 009002 377 ITAALALVVLDFKDARPSLEKVS--------YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGI--AVLAA 446 (547)
Q Consensus 377 l~~a~~l~~~~~~~~~~~~~~id--------w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~--~~l~~ 446 (547)
++|..+.+..+-.+.||-.|+++ --.++|-+|.| .+-++.||..|.+++.+.+... +..++. ....+
T Consensus 259 mig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AAGif--~Gil~gtgMvdama~si~~vIP-~~lgpyl~~ivgl 335 (433)
T COG2851 259 MIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAAGIF--LGILSGTGMVDAMAKSIVSVIP-DALGPYLPLIVGL 335 (433)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHHHHH--hhhhCCCchHHHHHHHHHHhCc-HhhcchHHHHHHH
Confidence 99998888877666555444332 33445555554 5778999999999999876532 111111 12333
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc---ChhhhhhhhhHHHHhccccCCCCCceee
Q 009002 447 VILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAG---NLSLVGSAANLIVCEQAHRAPHLGYTLS 523 (547)
Q Consensus 447 v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg---~~TpiGs~aNliv~~~~~~~~~~gy~i~ 523 (547)
++.=++-|+||-+.---..|++ .+.+.+.|.+|.. .+..+-.|. +.+|.- ++..+..+.++. +
T Consensus 336 ~svP~tf~~snDAyYfGvlPIv-~e~as~yGv~pv~----~A~AsiiGq~vh~lSPlv-Pat~LlvgLa~v--------~ 401 (433)
T COG2851 336 LSVPFTFFMSNDAYYFGVLPIV-AEAASAYGVEPVE----IARASIIGQPVHFLSPLV-PATYLLVGLAKV--------D 401 (433)
T ss_pred HcCCeEEEecCcchhhhhHHHH-HHHHHHcCCCHHH----HHHHHHhCCcceeeccch-HHHHHHHHhhcC--------C
Confidence 4444568999999999999965 5666667887643 233333444 455654 555666665432 4
Q ss_pred hhhhHhhhhH
Q 009002 524 FWNHLKFGVP 533 (547)
Q Consensus 524 f~df~k~G~p 533 (547)
+.||.|+.+-
T Consensus 402 ~gdh~k~a~~ 411 (433)
T COG2851 402 MGDHQKFALK 411 (433)
T ss_pred hhHHHHHHHH
Confidence 6666666553
No 52
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=99.18 E-value=2.2e-07 Score=98.60 Aligned_cols=151 Identities=11% Similarity=0.101 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHccCChHHHH-----hcCChhHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 009002 37 AGSLLGAMLMVIFQVITPDQAY-----AAIDLPILGLLFGTMVVSVYLESA-DMFKYLGRMLSWKSRGPKDLLCRICLIS 110 (547)
Q Consensus 37 ~~al~~~~~l~l~gv~~~~~a~-----~~~~~~~i~~l~~~~il~~~l~~s-G~~~~ia~~i~~~~~~~~~ll~~i~~~~ 110 (547)
.+.+.+++.+-+..-.+++|.. .+.++.++.++.++..+...++++ |..|++++.+.+..+ +++..+...+ +
T Consensus 25 ~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~g-~~~~~~ap~l-i 102 (387)
T TIGR00529 25 LLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIFS-KNSDSFVPAL-I 102 (387)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-cccHHHHHHH-H
Confidence 5456666666666667888876 456688888888888888899999 999999999887763 3333333333 2
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHH
Q 009002 111 AISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFV 190 (547)
Q Consensus 111 ~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv 190 (547)
.++.. .+..+++.|++.+++++.|.|+.....+...+-...=..-|- +|-=+.+.+..|.+..++..+++|..+.
T Consensus 103 G~lPv----~~g~vilaPlv~~la~~~~~s~~~~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l~~~lg~~il~gl~i~i~ 177 (387)
T TIGR00529 103 GLMPM----PGGALFSAPMVKNSLKEERINPEKLTVKNYWFRHTWEFFWPI-YPAVVLVSALSGIHPGKVSLTLFPVFAI 177 (387)
T ss_pred HHhhH----HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33322 467778999999999999999998888877776665555554 5655566677889999999999999888
Q ss_pred HHHH
Q 009002 191 GVAV 194 (547)
Q Consensus 191 ~~~v 194 (547)
.++.
T Consensus 178 ~~i~ 181 (387)
T TIGR00529 178 AFFL 181 (387)
T ss_pred HHHH
Confidence 7554
No 53
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.18 E-value=9.2e-10 Score=117.45 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=133.6
Q ss_pred HHHHHHHhC-CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhh
Q 009002 361 GMLVSLLMG-LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVG 439 (547)
Q Consensus 361 ~~i~~~~~g-i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 439 (547)
++.++.-.| +.++....+|.+++.+.-..++. +.+|+.++++++++..+.++++||..|++.+.+.+...-++..
T Consensus 12 ~i~~g~r~ggig~g~~gg~g~~il~~~~~~~p~----~~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~ 87 (443)
T PRK12489 12 CLFLGARYGGIGLGLLGGIGLVILVFVFGLPPG----KPPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKY 87 (443)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCCC----CCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhH
Confidence 344444444 77788887877776654223333 3899999999999999999999999999999887754323322
Q ss_pred HHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCC
Q 009002 440 GIAVLAAVILVLSNLASNVP-TVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHL 518 (547)
Q Consensus 440 ~~~~l~~v~~~lS~~isN~p-~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~ 518 (547)
...+..++.+++.|++|++ ++..+.| +....|+..+.+|.++....++++.+|..+||++..+|.++- .+++. +
T Consensus 88 -i~llap~vt~l~afl~~Tg~~v~~~lP-Vi~~vA~k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l~~-~l~~~--~ 162 (443)
T PRK12489 88 -ITILAPFVTYTLTFLCGTGHVVYSILP-IIYDVALKNGIRPERPMAAASVASQMGITASPVSAAVVSLVA-MLGNV--T 162 (443)
T ss_pred -HHHHHHHHHHHHHHhCCcHHHHHHHHH-HHHHHHHHcCCChhhhHHHHHHHHHHHHHhcchhHHHHHHHH-HHHhc--c
Confidence 3345566777779999999 5888999 567889999999998877777888899999999988887754 33331 3
Q ss_pred C--ceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 519 G--YTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 519 g--y~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
+ ..++|+|+..+|+|.+++..+...+
T Consensus 163 ~~~~g~~~f~il~VgIP~~~ig~l~~~l 190 (443)
T PRK12489 163 GEGRHITLLDILAVTIPATLIGVLAAAL 190 (443)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4578999999999999998887554
No 54
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=99.15 E-value=7.7e-07 Score=96.47 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHHHHHccCChHHHHh----cCC---hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHH
Q 009002 33 IGRTAGSLLGAMLMVIFQVITPDQAYA----AID---LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCR 105 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~gv~~~~~a~~----~~~---~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~ 105 (547)
.+...+.+++++...++.-.++.|..+ ++. +...+.++...+++..+++||..+++++.+.+..++. +..+.
T Consensus 22 ~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~-r~~~a 100 (440)
T TIGR00791 22 LNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKS-RVQWA 100 (440)
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhccc-chHHH
Confidence 333355666777666666666665443 233 6777788888999999999999999999998776543 33334
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHH
Q 009002 106 ICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGIL 185 (547)
Q Consensus 106 i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~l 185 (547)
++..+++++....-+...+++.|++.+++++.|+++..+.++.+.+....-..-|-+-++ +.+.+..|.+..+++..++
T Consensus 101 ~~~~~~ilgi~~f~~~~~vil~Pi~~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~-~~~a~~~g~~~~~~~~~gl 179 (440)
T TIGR00791 101 VVIAGLIVGLALFFEVGFVLLIPLVFSIAAEAKISLLKLGIPMVAALSVAHGFLPPHPGP-TAIANEYGADIGEVLLYGL 179 (440)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhceeCCCCccH-HHHHHHhCCCHHHHHHHHH
Confidence 444445554444334457799999999999999999888778777666544445554444 4566678899999999988
Q ss_pred HHHHHH
Q 009002 186 PAMFVG 191 (547)
Q Consensus 186 p~~iv~ 191 (547)
+..+..
T Consensus 180 ~~~i~~ 185 (440)
T TIGR00791 180 IVAIPT 185 (440)
T ss_pred HHHHHH
Confidence 877664
No 55
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.13 E-value=2.4e-09 Score=115.29 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=126.9
Q ss_pred CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHH
Q 009002 370 LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVIL 449 (547)
Q Consensus 370 i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~ 449 (547)
+.....+.+|.+++.+.=..+++| +||++++++.+.+.....+++||+.|++++...+..+..+....+.+..++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i~~~ 97 (433)
T PRK09412 22 IGIGFAGGLGVLILTFIFGLKPGS----IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPIVTY 97 (433)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC----CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHHHHH
Confidence 667777777777776653445544 9999999999999999999999999999986665544333333344556677
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHh
Q 009002 450 VLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLK 529 (547)
Q Consensus 450 ~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k 529 (547)
++|.+.+|...+..+.| +...++..+|.||.........++++|+..||++..+|.+..... +.| ++|+||++
T Consensus 98 lfs~~~~~~~~~i~~~P-I~i~ia~~lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia----~~g--i~f~~~~~ 170 (433)
T PRK09412 98 LFTFLAGTGHIAFSTLP-VIAEVAKEQGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLE----PLG--VSYLTLLM 170 (433)
T ss_pred HHHHHhcHHHHHHHHHH-HHHHHHHHcCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHh----cCC--CCHHHHHH
Confidence 88877777777777899 558889999999876777778889999999999988666654432 125 47999999
Q ss_pred hhhHHHHHHHHHHhhh
Q 009002 530 FGVPSTLIVTAIGLPL 545 (547)
Q Consensus 530 ~G~p~~li~~iv~~~~ 545 (547)
+++|..++.++++.+.
T Consensus 171 ~~lp~~iv~~~~~~~~ 186 (433)
T PRK09412 171 VVIPSTLLAVMVAAFV 186 (433)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988876543
No 56
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=99.10 E-value=1.7e-08 Score=103.22 Aligned_cols=144 Identities=23% Similarity=0.358 Sum_probs=106.3
Q ss_pred HHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHH
Q 009002 46 MVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVV 125 (547)
Q Consensus 46 l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i 125 (547)
-++.|.-+|+++.+.+..|-=..+.-||+++....--.+.-++-.++.-..+++..+-+.+|+.++++|+|+|--+++++
T Consensus 75 Av~iGmTsp~~v~hEi~~N~eViLLL~FMVAGIYFMK~lLlf~FTklLl~irSK~~LSL~Fc~~aAfLSAFLDALTV~AV 154 (515)
T PF06450_consen 75 AVAIGMTSPEQVYHEIAANFEVILLLMFMVAGIYFMKQLLLFVFTKLLLKIRSKIVLSLAFCFAAAFLSAFLDALTVTAV 154 (515)
T ss_pred HHHHcCCCHHHHHHHHHhChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 45789999999998875444334444566666666666666776666555567777888999999999999999998887
Q ss_pred HHHHHHH-------HHHHcCC--------C----c-------------hHHHHHHHHHHhhhccccccCcccchheeecC
Q 009002 126 LTEFVLK-------IARQHNL--------P----P-------------HPFLLALASSANIGSSATPIGNPQNLVIAVQS 173 (547)
Q Consensus 126 ~~Pi~~~-------ia~~~~~--------~----p-------------~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~ 173 (547)
.+.+.+. .++..+. | . +-++|=-+.+.-+||.+|.+|-|||+++....
T Consensus 155 iIsVa~GFY~iYHkvaSg~~~~~~~d~~~D~~v~~~~r~~Le~FRaFLRsLmMH~~VGTALGGV~TmVGEPQNLiIa~~a 234 (515)
T PF06450_consen 155 IISVAVGFYSIYHKVASGKDFHDDHDHTDDSKVDELNREDLEQFRAFLRSLMMHAAVGTALGGVMTMVGEPQNLIIAKQA 234 (515)
T ss_pred eeEeeehhhhhhhhhhcCCCCCCccCCccchhhhhhhHHHHHHHHHHHHHHHHhcccchhhcceeeecCCchhhhhhhhc
Confidence 7766442 2322111 0 0 13566677899999999999999999999999
Q ss_pred CCChHHHHHhHHHHHH
Q 009002 174 KIPFGKFLIGILPAMF 189 (547)
Q Consensus 174 ~~~f~~f~~~~lp~~i 189 (547)
|-.|.||+..+.|.++
T Consensus 235 gW~F~eFflrmaPVt~ 250 (515)
T PF06450_consen 235 GWDFGEFFLRMAPVTL 250 (515)
T ss_pred CCCHHHHHHhhccchH
Confidence 9999999987766543
No 57
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=99.07 E-value=8.3e-09 Score=93.85 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=102.8
Q ss_pred CCCccchHHHHHHHHHHHHH-HHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCc-hhHHHH
Q 009002 28 VPFLPIGRTAGSLLGAMLMV-IFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGP-KDLLCR 105 (547)
Q Consensus 28 ~~~~pi~~~~~al~~~~~l~-l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~-~~ll~~ 105 (547)
.++++++ ..++..+.++- +..-+++||.+++++++..+++.|...+-...+++|-.|++++++.+..+++ +.+=+.
T Consensus 20 ~~kiNiG--llAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~liP~v 97 (149)
T PF07158_consen 20 VRKINIG--LLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPALIPWV 97 (149)
T ss_pred ccccchH--HHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCceehHHH
Confidence 3444566 44565554443 3355799999999999999999999999999999999999999999888764 555588
Q ss_pred HHHHHHHHhhhch-hhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhc
Q 009002 106 ICLISAISSALFT-NDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGS 156 (547)
Q Consensus 106 i~~~~~~lS~fls-N~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg 156 (547)
++++++++|++=. +.++..++.|+.+.+|+|.|+||...-+....+++.||
T Consensus 98 ~f~~~~~lsa~G~g~~~~~Ai~aPia~~lA~~~gi~p~l~~~~v~~Ga~aG~ 149 (149)
T PF07158_consen 98 MFLLAAVLSAIGAGSIAAVAIMAPIAMSLARRTGINPLLMALIVVCGAQAGG 149 (149)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccCC
Confidence 8889999999854 66788899999999999999999777777777776543
No 58
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=99.03 E-value=2.3e-08 Score=107.85 Aligned_cols=193 Identities=12% Similarity=0.179 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHH---HHHHHHHHHHHHccCChHHHHhcCCh----------hHHHHHHHHH
Q 009002 7 VKVVLGSIAFAIFWVMAVFPAVPFLPIGRTA---GSLLGAMLMVIFQVITPDQAYAAIDL----------PILGLLFGTM 73 (547)
Q Consensus 7 ~k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~---~al~~~~~l~l~gv~~~~~a~~~~~~----------~~i~~l~~~~ 73 (547)
.+.+++++=++-...++++........+... .++..+.++-..+..++||.++.++. +++.++.+..
T Consensus 242 ~p~~yallPllPLilll~f~~~~~~~~~v~~~~~~s~~i~~~~~~~r~~~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAg 321 (455)
T PRK10654 242 APAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLLAAVLEFLRSFNTKKVFSGLEVAYRGMADAFAGVVMLLVAAG 321 (455)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4566777555544444433322111222111 12222223334489999999777655 6889999999
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 009002 74 VVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALF-TNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSA 152 (547)
Q Consensus 74 il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa 152 (547)
+.+++++.+|+.|.+++.+.....++..+++.+.+++++.+... +|+++...+.|++..+|++.|.||..+.+++..++
T Consensus 322 vfs~gL~~~Gl~~~l~~~l~~lg~~~~~illv~~il~~l~~~~~GSg~a~~~af~pi~~pia~~lG~~pv~~~~~~~~~~ 401 (455)
T PRK10654 322 VFAQGLSTIGFIQSLISLATSFGSAGIILMLVLVILTMLAAITTGSGNAPFYAFVELIPKLAHSSGINPAYLTIPMLQAS 401 (455)
T ss_pred HHHHHHHHcCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999988776577777777778888888888 99999999999999999999999999999999999
Q ss_pred hhhccccccCcccchhe-eecCCCChHHHHHhHHHHHHHHHHHHHHHHHH
Q 009002 153 NIGSSATPIGNPQNLVI-AVQSKIPFGKFLIGILPAMFVGVAVNALILLT 201 (547)
Q Consensus 153 ~~Gg~~TpiG~p~Nliv-~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~ 201 (547)
++|....|++. ++++ .+..+++..|..|...++.++++++..++...
T Consensus 402 ~~G~~~sPvs~--~ii~~ag~a~~~~~~ivKrt~ip~ii~~iv~~i~~~~ 449 (455)
T PRK10654 402 NLGRTISPVSG--VVVAVAGMAKISPFEVVKRTSVPVLVGLLIVIVATEI 449 (455)
T ss_pred HHhCcCCcchh--hHhhhhcccCCCHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99888888753 3333 35678999999999776667777765544333
No 59
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=99.02 E-value=1.2e-06 Score=94.20 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHHHHHccCChHHHHhcC----C---hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHH
Q 009002 33 IGRTAGSLLGAMLMVIFQVITPDQAYAAI----D---LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCR 105 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~gv~~~~~a~~~~----~---~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~ 105 (547)
+|...+-+++++.+-+..=.+++|..+.+ . -..-+.++-.-++++.+++||..|++|+.+.++.+. ++.-+.
T Consensus 22 lhpF~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~-k~~~~A 100 (441)
T PF02447_consen 22 LHPFLALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGE-KRAPLA 100 (441)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCC-CcccHH
Confidence 44334455566666566567888766543 2 122334444577899999999999999999876543 333333
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhh-ccccccCcccchheeecCCCChHHHHHhH
Q 009002 106 ICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIG-SSATPIGNPQNLVIAVQSKIPFGKFLIGI 184 (547)
Q Consensus 106 i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~G-g~~TpiG~p~Nliv~~~~~~~f~~f~~~~ 184 (547)
+.+..+++|-=+=.|...+++.|++.+++|+.|.+...+.++++.+...+ ++..| +|-=+-+.+..|.+...++.+|
T Consensus 101 ~~i~g~iv~IPvF~dv~~viL~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPP--tPgpla~a~~lg~dlG~~il~G 178 (441)
T PF02447_consen 101 LAITGFIVGIPVFFDVGFVILAPLAFSLARKTGKSLLYLALPLAAGLSVTHALVPP--TPGPLAAAGALGADLGLVILYG 178 (441)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC--CCcHHHHHHHhCCChhHHHHHh
Confidence 34444444433334467899999999999999999888777777766653 44444 5555556677888999998888
Q ss_pred HHHHHHHHHH
Q 009002 185 LPAMFVGVAV 194 (547)
Q Consensus 185 lp~~iv~~~v 194 (547)
++..+...++
T Consensus 179 l~vaip~~~i 188 (441)
T PF02447_consen 179 LIVAIPAMLI 188 (441)
T ss_pred HHHHHHHHHH
Confidence 8877665544
No 60
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=99.01 E-value=1.1e-05 Score=86.50 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=91.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 009002 398 VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISA 477 (547)
Q Consensus 398 idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~ 477 (547)
..-.+.+.+++..+++..+..+|+.+.+++++.+... ++..-+..+..+..++..|++.+|+..++.|+ ..-++++.|
T Consensus 274 ~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~-~~~~~Ll~i~~~~lvlGmfld~~a~ili~~Pi-l~Pi~~~~G 351 (425)
T PRK15060 274 TTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVD-SPRLLFIVIMVAIMVVGMVMDLTPTVLILTPV-LMPLVKEAG 351 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHcC
Confidence 4456677888888899999999999999999976532 23333334445677889999999999999994 466777889
Q ss_pred CCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHH
Q 009002 478 ADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIG 542 (547)
Q Consensus 478 ~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~ 542 (547)
.||-..-........+|..--|+| .|+.+.... .+ .++.|..|--+|.-+..+++-
T Consensus 352 idpv~fgii~~~~~~ig~iTPPvG--~~lfv~~~i-----a~--~~~~~i~~~~~Pf~~~~~~~l 407 (425)
T PRK15060 352 IDPIYFGVMFIINCSIGLITPPVG--NVLNVISGV-----AK--LKFDDAVRGVFPYVLVLYSLL 407 (425)
T ss_pred CChHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHh-----cC--CCHHHHHHHHHHHHHHHHHHH
Confidence 987533233333333444444777 455544421 22 368899999988877665543
No 61
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=98.99 E-value=3e-06 Score=89.53 Aligned_cols=351 Identities=19% Similarity=0.246 Sum_probs=201.0
Q ss_pred CccchHHHHHHHHHHHHHHHccCChHHHHh----cCChhHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHhhcCCchhHHH
Q 009002 30 FLPIGRTAGSLLGAMLMVIFQVITPDQAYA----AIDLPILGLLFGTMVVSVYLESA-DMFKYLGRMLSWKSRGPKDLLC 104 (547)
Q Consensus 30 ~~pi~~~~~al~~~~~l~l~gv~~~~~a~~----~~~~~~i~~l~~~~il~~~l~~s-G~~~~ia~~i~~~~~~~~~ll~ 104 (547)
+++++ ...+.|+.++.+..-.+++...+ ...|+++..+.....+.+.++++ |..|++.+.+.+..+ |..+.
T Consensus 19 ki~i~--~s~~~ga~~l~~~~~~~~~~~~~~~~~~~~~~~i~~il~i~~i~~~~~~~~g~l~~~~~~l~~l~~--R~~~~ 94 (385)
T PF04165_consen 19 KINIG--ISILLGALILGLLFGLGLDAFLKALASSSSWDTIVLILLIYFIMGLMEKLSGQLDRMVESLKGLFP--RVSLA 94 (385)
T ss_pred HhhHH--HHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHH
Confidence 35565 33455555554444355655443 34678888888888888888888 999999998776654 33222
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhH
Q 009002 105 RICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGI 184 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~ 184 (547)
.+ -++ =.++.--+-+.+=.|++-+.+++.++++..--.---+-=.+-=...|. +|.=++..+-.|++..+|...+
T Consensus 95 ~~---PAl-IGLLPmpGGA~fSAPmV~~~~~~~~ls~e~kt~iNywFRHiwE~~~Pl-YpgiiLas~l~gi~~~~~v~~~ 169 (385)
T PF04165_consen 95 FI---PAL-IGLLPMPGGALFSAPMVEEAAEKMGLSPEEKTFINYWFRHIWEFFWPL-YPGIILASALSGISVGEFVLAM 169 (385)
T ss_pred HH---HHH-HhcccCCCcceeehHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhCCCHHHHHHHH
Confidence 22 121 124455566777789999999999999885443333333333444554 3433344455689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCC
Q 009002 185 LPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNG 264 (547)
Q Consensus 185 lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (547)
+|..++.++.++ +++.|..+++.++ +
T Consensus 170 ~P~~~~~~~~G~----~~~~r~~~~~~~~------------------------------~-------------------- 195 (385)
T PF04165_consen 170 WPITLLAFLIGW----LFFLRPLKKSEKK------------------------------P-------------------- 195 (385)
T ss_pred HHHHHHHHHHHH----HHHhccccccccC------------------------------C--------------------
Confidence 999988766542 2222212110000 0
Q ss_pred CCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccch
Q 009002 265 NGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSS 344 (547)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~ 344 (547)
+
T Consensus 196 -------------------------------------------------------------------------------~ 196 (385)
T PF04165_consen 196 -------------------------------------------------------------------------------R 196 (385)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCh---HHHHh-hcChhHHHHHHHHHHHHHHHHHhC
Q 009002 345 EWKRVLRKSCVYLITLGMLVSLLMGLNMSWTAITAALALVVLDFKDA---RPSLE-KVSYSLLIFFCGMFITVDGFNKTG 420 (547)
Q Consensus 345 ~~~~~~~~~~~~~i~~~~i~~~~~gi~~~~~al~~a~~l~~~~~~~~---~~~~~-~idw~~ll~f~glf~l~~al~~tG 420 (547)
++|+.+.....++ +.+++....++|.....+.+.+.+.+..+.+. +++++ ..||++++...+.+..-+-++.||
T Consensus 197 ~~~~~l~s~~Pil--~~i~l~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG 274 (385)
T PF04165_consen 197 SLKDLLKSLWPIL--VIILLSVLFKLPLALGLLIALLAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATG 274 (385)
T ss_pred chHHHHHHHhHHH--HHHHHHHHHcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC
Confidence 0011011111111 11222233567665544433333444444444 35554 599999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcC-hh
Q 009002 421 IPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLAS-NVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGN-LS 498 (547)
Q Consensus 421 ~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~is-N~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~-~T 498 (547)
+.|.+.+.+.+. +. +...++.++..+.+-... +.+.+.+-.|.+. ... +. .....+++.++..|. .+
T Consensus 275 ~~~~l~~~l~~~-~i---p~~li~~lipFivG~~TGi~~a~vgi~fPll~-~l~---~~---~~~~~la~~~g~~GvmlS 343 (385)
T PF04165_consen 275 VVEELPEFLSSL-GI---PPFLIIALIPFIVGLITGITQAFVGIAFPLLA-PLI---GG---LPYLVLAYASGFAGVMLS 343 (385)
T ss_pred hHHHHHHHHHhC-CC---cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-Hhc---cc---chHHHHHHHHHHHHHhhc
Confidence 999999887542 11 122222222222222222 3556666678543 221 11 344677777777774 44
Q ss_pred hhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 499 LVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 499 piGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
|. +.+=++..+ -||-++.+-.|--+|..++..+++..
T Consensus 344 P~-HlCLvlT~e--------YFk~~~~~v~k~l~~p~~i~~~~~~~ 380 (385)
T PF04165_consen 344 PV-HLCLVLTAE--------YFKADLGKVYKKLLPPALIFLAAGLL 380 (385)
T ss_pred hH-HHHHHHHHH--------HhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 43 455555555 45667888778777777766665544
No 62
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=98.98 E-value=1.9e-06 Score=92.63 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=89.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC
Q 009002 399 SYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAA 478 (547)
Q Consensus 399 dw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~ 478 (547)
.-.+.+.+++.-+++..+..+|+.+.+++++.+..+ ++...+..+.++..++..+++-+|+..+..|++ .-..++.|.
T Consensus 275 ~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~-~~~~~l~l~~l~~lilG~~m~~~a~~ii~~pi~-~P~~~~~Gi 352 (416)
T PF06808_consen 275 TGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSG-SPWLVLLLIMLILLILGMFMDTTAAIIIVAPIL-APIAQALGI 352 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCc-chHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHhCc
Confidence 445677888888899999999999999999976532 222233344456678889999999999999954 456677899
Q ss_pred CchHHHHHHHHHHHhhcChh-hhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHH
Q 009002 479 DEKKAWLILAWVSTVAGNLS-LVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAI 541 (547)
Q Consensus 479 ~~~~~~~~l~~~~~~gg~~T-piGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv 541 (547)
||-....... ....-|+.| |+|. +--+..++. + .++.+..|.-+|...+....
T Consensus 353 dpi~~g~~~~-~~~~ig~iTPPvgl-~lfva~~ia------~--~~~~~i~~~~~Pf~~~~~~~ 406 (416)
T PF06808_consen 353 DPIHFGVFMF-YNAEIGLITPPVGL-NLFVAAGIA------G--VPMEKIFRGILPFIFVLLVA 406 (416)
T ss_pred chhhHHHHHH-HHHHhcCCCCCccH-HHHHHHHHh------C--CCHHHHHHHHHHHHHHHHHH
Confidence 8854444333 444555566 6663 223333432 2 24788888888887765544
No 63
>PRK09821 putative transporter; Provisional
Probab=98.97 E-value=3.7e-06 Score=90.54 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHHHHccCChHHHHhcCC-------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHH
Q 009002 33 IGRTAGSLLGAMLMVIFQVITPDQAYAAID-------LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCR 105 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~gv~~~~~a~~~~~-------~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~ 105 (547)
++...+.+++++...+..-.++++..+.+. -...++++..-+++..+++||.+|.+++.+.+..+.+ +..+.
T Consensus 26 l~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k-~~~~a 104 (454)
T PRK09821 26 VQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDK-RTIAA 104 (454)
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-chHHH
Confidence 333355566666666666677777654432 2344455666788999999999999999998876543 44445
Q ss_pred HHHHHHHHh--hhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh-hccccccCcccchheeecCCCChHHHHH
Q 009002 106 ICLISAISS--ALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANI-GSSATPIGNPQNLVIAVQSKIPFGKFLI 182 (547)
Q Consensus 106 i~~~~~~lS--~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~-Gg~~TpiG~p~Nliv~~~~~~~f~~f~~ 182 (547)
+++.+++++ .|. |.+-+++.|++..++||.|.++..+.++++-+.+. -++..|-..|+|. .+..|.+......
T Consensus 105 i~i~~~ilgIpvF~--dv~fvil~Pl~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~--a~~Lg~d~g~~~l 180 (454)
T PRK09821 105 LTLAAFILGIPVFF--DVGFIILAPIIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAA--AGLLHADIGWLTI 180 (454)
T ss_pred HHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHH--HHHhCCCHHHHHH
Confidence 666666665 454 57777999999999999999988887777643332 2344666667775 4667788888888
Q ss_pred hHHHHHHHHHHH
Q 009002 183 GILPAMFVGVAV 194 (547)
Q Consensus 183 ~~lp~~iv~~~v 194 (547)
+|++..+...++
T Consensus 181 ~Giivaip~~i~ 192 (454)
T PRK09821 181 IGIAISIPVGIV 192 (454)
T ss_pred HHHHHHHHHHHH
Confidence 887777666554
No 64
>PRK11588 hypothetical protein; Provisional
Probab=98.97 E-value=2.6e-06 Score=92.11 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=82.0
Q ss_pred HHHHHHHhcHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHh
Q 009002 75 VSVYLESADMFKYLGRMLSWKSRG-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSAN 153 (547)
Q Consensus 75 l~~~l~~sG~~~~ia~~i~~~~~~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~ 153 (547)
.-..+++||.+|.--.++.++.++ +..++..++++-++.+++.--.=-...+.|+.+.++..+|.|+..-.-.+..++.
T Consensus 122 ~f~vi~~TGAi~~~i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~f~pi~v~l~~alGyD~ivg~ai~~lg~~ 201 (506)
T PRK11588 122 AFGIVMRTGTIDNGILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIAFAIIIAPLMVRLGYDSITTVLVTYVATQ 201 (506)
T ss_pred HHHHHHHhchHHHHHHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhh
Confidence 345679999999998888876654 4555555555555555544332233468999999999999999766555556666
Q ss_pred hhccccccCcccchheee-cCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 009002 154 IGSSATPIGNPQNLVIAV-QSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKL 206 (547)
Q Consensus 154 ~Gg~~TpiG~p~Nliv~~-~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~l 206 (547)
. |+++-.=||-++-+++ -.|++.++=+...+...++..++++.+.+.+.+|-
T Consensus 202 i-Gf~~s~~NPftvgIAQ~iAglp~~SG~~~R~i~~~v~~~i~i~yv~~YA~kV 254 (506)
T PRK11588 202 I-GFATSWMNPFSVAIAQGIAGVPVLSGSGLRIVMWVIFTLIGLIFTMVYASRV 254 (506)
T ss_pred h-hhcccccCccHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 5555555888876653 45666543232233333444444455555555543
No 65
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=98.87 E-value=1.6e-05 Score=86.15 Aligned_cols=150 Identities=12% Similarity=0.045 Sum_probs=108.2
Q ss_pred cCChHHHHhc----CC--hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhch-hhHHH
Q 009002 51 VITPDQAYAA----ID--LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFT-NDTSC 123 (547)
Q Consensus 51 v~~~~~a~~~----~~--~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~fls-N~~~v 123 (547)
..+++|..+. +. .+.+..+.-.=.++.....+|..+.+..+-.+. =+|+.+....+++++++|...- .-+|+
T Consensus 49 ~~~~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~-i~p~~~~~~~Fl~~~~~s~~~Gss~gt~ 127 (454)
T TIGR00931 49 GVGYNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSI-ISPEWFAVSTLLICMIVSSFTGTSWGTV 127 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4677765543 32 233333333334566888899988886543333 3677888888888888887765 66788
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009002 124 VVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILLTM 202 (547)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~ 202 (547)
..+.|+.+.++...|.||....=++.-+|-.|--++|+.+.+|+ .....|.+..|+.+..+|..+...+++.+...++
T Consensus 128 ~~~g~~l~~i~~~~g~~~~~~agai~sGa~fGD~~sP~Sdtt~l-~a~~~~~~~~~~v~~~~~~~~~a~~i~~v~~~i~ 205 (454)
T TIGR00931 128 GTIGVAMMGIGTGLGIDLAIAAGAVVCGAYFGDKLSPLSDTTNF-ASGIVGVDLFDHIRHLLYTTVPSFVITAILFLVI 205 (454)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCCCCcHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999866555666677889999999999886 5555678999999999998887777665443333
No 66
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.87 E-value=5e-07 Score=90.55 Aligned_cols=143 Identities=21% Similarity=0.337 Sum_probs=100.3
Q ss_pred HHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHH
Q 009002 47 VIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVL 126 (547)
Q Consensus 47 ~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~ 126 (547)
+..|.-+|++..+.+..+.=.++.-+|.++....--.+.-++-.++.-..++...+-+.+|+.++++|+|+|..+++++.
T Consensus 76 v~iGmt~p~~v~~Ei~aN~eVlLLL~FMVAGIyFMKqLLLfiFtklLl~iRSK~~LSlaFc~~aAfLSAFLDALTVvAVv 155 (516)
T COG3067 76 VAIGMTSPEHVKEEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLSIRSKMLLSLAFCVAAAFLSAFLDALTVVAVV 155 (516)
T ss_pred HHHcCCCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 46788899988877644433344445666666555555555555544334455566688999999999999999988776
Q ss_pred HHHHHH-------HHHHc------------CCCch-------------HHHHHHHHHHhhhccccccCcccchheeecCC
Q 009002 127 TEFVLK-------IARQH------------NLPPH-------------PFLLALASSANIGSSATPIGNPQNLVIAVQSK 174 (547)
Q Consensus 127 ~Pi~~~-------ia~~~------------~~~p~-------------~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~ 174 (547)
+.+.+. +++.. ++++. .++|--+.+..+||.+|.+|.|||+++..+.|
T Consensus 156 ISVavgFy~iYH~VaSg~~~~~~~D~~~D~~i~e~~~~~LE~fRaFLRSLmMHagVGTALGGVmTmVGEPQNLiIa~~Ag 235 (516)
T COG3067 156 ISVAVGFYGIYHRVASGRTESDDTDITDDSHIDEHYKVVLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQAG 235 (516)
T ss_pred eeehhhhhhhhhhhccCCCcccccCccccccCChHHHHHHHHHHHHHHHHHHhhccchhhcceeeeccCchhhhhhhhcc
Confidence 666542 23222 12211 24556678888999999999999999999999
Q ss_pred CChHHHHHhHHHHHH
Q 009002 175 IPFGKFLIGILPAMF 189 (547)
Q Consensus 175 ~~f~~f~~~~lp~~i 189 (547)
-.|.||+.-+.|.++
T Consensus 236 W~F~eFflrm~PVt~ 250 (516)
T COG3067 236 WHFGEFFLRMAPVTV 250 (516)
T ss_pred ccHHHHHHHhcCchh
Confidence 999999987766543
No 67
>PRK09921 permease DsdX; Provisional
Probab=98.83 E-value=3.5e-05 Score=83.29 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHHHHccCChHHHHhc----CC--h-hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHH
Q 009002 33 IGRTAGSLLGAMLMVIFQVITPDQAYAA----ID--L-PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLC 104 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~gv~~~~~a~~~----~~--~-~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~ 104 (547)
+|...+-+.+++.+-+..-.+++|..+. +. . .....++...+++..+|+||..+++++.+.+..+ +......
T Consensus 27 ~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~~~~~~~~a~~ 106 (445)
T PRK09921 27 FHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSADVIMV 106 (445)
T ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhhhhHHHHHH
Confidence 4433444557777777777777776543 33 1 2224555567889999999999999999765422 3334444
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhH
Q 009002 105 RICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGI 184 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~ 184 (547)
.+.++++ .+.|+ +...+++.|++.+++|+.|.++.+..++.+.+....-..- =++|.-+.+.+..|.+...+...+
T Consensus 107 ~~gll~~-IpvF~--~~~~vil~Pl~~~lak~~~~s~~~~~~~~~~~~~~~h~~v-Pp~Pg~~~~a~~lg~~lg~~~l~G 182 (445)
T PRK09921 107 LVGLICG-ITLFV--EVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVV-PPHPAALFVANKLGADIGSVIVYG 182 (445)
T ss_pred HHHHHHc-ccHHH--HhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhHhcC-CCCcHHHHHHHHhCCCHHHHHHHH
Confidence 4444433 34443 3456689999999999999998888777766554433332 357776667778889999999999
Q ss_pred HHHHHHHHHH
Q 009002 185 LPAMFVGVAV 194 (547)
Q Consensus 185 lp~~iv~~~v 194 (547)
+|..+...++
T Consensus 183 l~~~i~~~~i 192 (445)
T PRK09921 183 LLVGLMASLV 192 (445)
T ss_pred HHHHHHHHHH
Confidence 9888665443
No 68
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=98.83 E-value=1.3e-05 Score=85.87 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHHHHccCChHHHHhcCC-------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHH
Q 009002 33 IGRTAGSLLGAMLMVIFQVITPDQAYAAID-------LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCR 105 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~gv~~~~~a~~~~~-------~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~ 105 (547)
+|...+.+++++...+..-.+++|..+.+. -..-+.++..-+++..+++||..+++|+.+.++.+ +++..+.
T Consensus 22 l~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G-~kr~~~a 100 (438)
T PRK14984 22 MNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFG-KKHIQWA 100 (438)
T ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhC-ccchHHH
Confidence 444466677777777777788887765432 13334445556788999999999999999987653 3455555
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHH
Q 009002 106 ICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGIL 185 (547)
Q Consensus 106 i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~l 185 (547)
+.+.+++++-=+-=|..-+++.|++.+++||.|.+...+..++..+....-.+ .-++|--+-+.+..|.+....+.+|+
T Consensus 101 ~~l~~~il~ipvF~dv~fvil~Pi~~~lak~~~~~~~~~~~~l~~gl~~th~~-vPP~Pgpla~a~~lgadlG~~il~Gl 179 (438)
T PRK14984 101 VVLTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGF-LPPHPGPTAIATIFNADMGKTLLYGT 179 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHhCCCHHHHHHHhH
Confidence 55555555433334566669999999999999998777666665544432222 23567666677888999999999888
Q ss_pred HHHHHHH
Q 009002 186 PAMFVGV 192 (547)
Q Consensus 186 p~~iv~~ 192 (547)
++.+.+.
T Consensus 180 ivaip~~ 186 (438)
T PRK14984 180 ILAIPTV 186 (438)
T ss_pred HHHHHHH
Confidence 7776654
No 69
>PRK10472 low affinity gluconate transporter; Provisional
Probab=98.83 E-value=2.4e-05 Score=84.17 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHccCChHHHHhcC----C--h-hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHH
Q 009002 36 TAGSLLGAMLMVIFQVITPDQAYAAI----D--L-PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICL 108 (547)
Q Consensus 36 ~~~al~~~~~l~l~gv~~~~~a~~~~----~--~-~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~ 108 (547)
..+.+++++.+.++.-.++++..+.+ . + .....++...+++..+|+||..+++++.+.+..+ +++..+.+.+
T Consensus 29 fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG-~kr~~~A~~l 107 (445)
T PRK10472 29 FVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFG-HSRAHYAIGL 107 (445)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcC-cccHHHHHHH
Confidence 35567788888777777777755443 2 1 2223455556789999999999999999987754 3455566666
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh-hccccccCcccchheeecCCCChHHHHHhHHHH
Q 009002 109 ISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANI-GSSATPIGNPQNLVIAVQSKIPFGKFLIGILPA 187 (547)
Q Consensus 109 ~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~-Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~ 187 (547)
.+++++-=+=-|...+++.|++.+++||.|.+...+.++++-+-.. .++..| +|-=+-+.+..|.+....+.+|+++
T Consensus 108 ~g~iv~iPvF~dv~fvil~Pl~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP--~Pgp~a~a~~l~adlG~~il~Gliv 185 (445)
T PRK10472 108 AGLICALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP--GPAPMLLASQMNADFGWMILIGLCA 185 (445)
T ss_pred HHHHHhhHHHHhhHHHHhHHHHHHHHHHHCCChHHHHHHHHHHHHhcccccCC--CcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666665555788899999999999999999998888887777443 344444 4544556677888999999888877
Q ss_pred HHHHHH
Q 009002 188 MFVGVA 193 (547)
Q Consensus 188 ~iv~~~ 193 (547)
.+...+
T Consensus 186 aip~~~ 191 (445)
T PRK10472 186 AIPGMI 191 (445)
T ss_pred HHHHHH
Confidence 766544
No 70
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=98.80 E-value=6.7e-05 Score=80.07 Aligned_cols=348 Identities=12% Similarity=0.127 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHh---hcCCchhHHHHHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHcCC
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSW---KSRGPKDLLCRICLISAISSALFTNDTS-CVVLTEFVLKIARQHNL 139 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~---~~~~~~~ll~~i~~~~~~lS~flsN~~~-v~i~~Pi~~~ia~~~~~ 139 (547)
..-+.++..+-.+..+++.|.-+.+.+...| +.|+|+.++...++++.++|-++++-+- .+++.--.+.+-.+.|+
T Consensus 75 glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~~ik~pYlll~~~~llg~llsl~IpSAaGLa~lLmatl~PvLi~~Gv 154 (455)
T PRK09804 75 GLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGV 154 (455)
T ss_pred cHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhccccHHhHHHHHHHHHHHHHHHcCC
Confidence 4456788888899999999999999887653 4567888888889999999999887654 33344444555567889
Q ss_pred CchHHHHHHHHHHhh-hccccccCcccchheeecCCCChHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 009002 140 PPHPFLLALASSANI-GSSATPIGNPQNLVIAVQSKIPFGKFL-IGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDAT 217 (547)
Q Consensus 140 ~p~~~l~~~a~aa~~-Gg~~TpiG~p~Nliv~~~~~~~f~~f~-~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~ 217 (547)
+|.. +.+.-|.. .=..+|- ++.|..+.+..|++..||+ .+-+|..+..+++ +....++..|...+|+... .
T Consensus 155 s~~~---AaaVia~t~~i~~gP~-s~~~v~aA~~~g~~v~~y~~~~q~p~~i~~i~~-iai~h~fwqr~~Dkk~~~~--~ 227 (455)
T PRK09804 155 SRLS---AVAVIATTMSIEWGIL-ETNSIFAAQVAGMKIATYFFHYQLPVASCVIIS-VAISHFFVQRAFDKKDKNI--N 227 (455)
T ss_pred CHHH---HHHHHHhhhcccCCCC-CchHHHHHHHcCCChhheeeeccHHHHHHHHHH-HHHHHHHHHHHHHhhcccc--c
Confidence 8743 22222221 1114443 5677788888899999998 5666766443333 2222233333332221100 0
Q ss_pred hhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhccccccchhccCCCcchhhhhh
Q 009002 218 AEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSGTFESARIT 297 (547)
Q Consensus 218 ~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (547)
++. . +.+
T Consensus 228 ~~~----~---------------------------------------------~~~------------------------ 234 (455)
T PRK09804 228 HEQ----A---------------------------------------------EQK------------------------ 234 (455)
T ss_pred ccc----c---------------------------------------------ccc------------------------
Confidence 000 0 000
Q ss_pred cccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHHHHHHH-HHHHH----hCCcH
Q 009002 298 NESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYLITLGM-LVSLL----MGLNM 372 (547)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-i~~~~----~gi~~ 372 (547)
+. +++...+...++.....++ +.. +.... ..++.
T Consensus 235 ---------------------------------------~~-~~~~p~~YAlLP~lPliLi-l~~~f~~~~~~~~i~l~v 273 (455)
T PRK09804 235 ---------------------------------------AL-DNVPPLYYAILPVMPLILM-LGSLFLAHVGLMQSELHL 273 (455)
T ss_pred ---------------------------------------cc-cccCchHHHHHHHHHHHHH-HHHHhhcccccCceeecH
Confidence 00 0001122222222211111 110 00000 12344
Q ss_pred HHHHHHHHHHHHH---hcCCChHHHHhhcC----------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhh
Q 009002 373 SWTAITAALALVV---LDFKDARPSLEKVS----------YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVG 439 (547)
Q Consensus 373 ~~~al~~a~~l~~---~~~~~~~~~~~~id----------w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 439 (547)
..+-+++..+-++ ++.++.|+.++.++ -+++-+..+-=+.+.+++..|+.|.+-+..++.. .+...
T Consensus 274 ~~am~is~~ia~l~e~ir~r~~k~~~~~~~~ff~GMG~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~g-~g~~~ 352 (455)
T PRK09804 274 VVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSG-LGGIG 352 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhCC-CchHH
Confidence 3333444433333 34455555533221 2345555555667899999999999988876532 22222
Q ss_pred HHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCC
Q 009002 440 GIAVLAAVILVLSNLA-SNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHL 518 (547)
Q Consensus 440 ~~~~l~~v~~~lS~~i-sN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~ 518 (547)
...++..++.+.+-++ |.+|..-.+.| +....|++.|.++....+.....+++|=...|++. .-+.+-+.
T Consensus 353 ~~lv~~~i~~l~a~l~GSGnAaffAF~~-lvp~iA~~~G~~~~~l~lpmq~as~lgRt~SPVag-viIavAg~------- 423 (455)
T PRK09804 353 VMIIMALVIAICAIVMGSGNAPFMSFAS-LIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITA-VVVVTSGI------- 423 (455)
T ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHH-HhHHHHHHcCCCHHHHHHHHHHHHhhccccCchhh-HHhhhccc-------
Confidence 2223333333333333 56777777778 55778888999987776777788899999999974 33444443
Q ss_pred CceeehhhhHhhhhHHHHHHHHHHh
Q 009002 519 GYTLSFWNHLKFGVPSTLIVTAIGL 543 (547)
Q Consensus 519 gy~i~f~df~k~G~p~~li~~iv~~ 543 (547)
-+++-.|-.|--.+.++..+++..
T Consensus 424 -a~vSP~eiVKRTavPml~g~i~~~ 447 (455)
T PRK09804 424 -AGVSPFAVVKRTAIPMAVGFVVNM 447 (455)
T ss_pred -cCCCHHHHHHHhHHHHHHHHHHHH
Confidence 344688999998888777766544
No 71
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=98.79 E-value=4.6e-06 Score=85.96 Aligned_cols=164 Identities=19% Similarity=0.307 Sum_probs=119.9
Q ss_pred cCCCccchHHHHHHHHHHHHHH-HccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-CCchhHHH
Q 009002 27 AVPFLPIGRTAGSLLGAMLMVI-FQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKS-RGPKDLLC 104 (547)
Q Consensus 27 ~~~~~pi~~~~~al~~~~~l~l-~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~-~~~~~ll~ 104 (547)
+.+.+.++ ..+-+|.+.+.+ +|. +|.+ .++++++.+++...-++.|+.+|-.|++-+.-.|.- ++|+++-+
T Consensus 14 R~GGiglG--~~gg~G~~il~~~fgl-~Pg~----~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~ 86 (364)
T PF03605_consen 14 RLGGIGLG--LAGGLGVAILVFGFGL-KPGS----PPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKYITF 86 (364)
T ss_pred cccchHHH--HHHHHHHHHHHHhcCC-CCCC----CCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEE
Confidence 45555555 334444444433 554 3433 899999999999999999999999999865433332 35655444
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee--ec-CCCChHHHH
Q 009002 105 RICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA--VQ-SKIPFGKFL 181 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~--~~-~~~~f~~f~ 181 (547)
.==++|.+++-+.---=++.-+.|++.++|++.|+.|++-+-.-..++++|-+++|+...+--++. +. .|+++.|.+
T Consensus 87 lAP~vt~~~T~~~GTgh~a~s~lPVI~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~iL 166 (364)
T PF03605_consen 87 LAPLVTYLFTFLAGTGHVAYSLLPVIAEVAKENGIRPERPLSISVVASQIAITASPISAATVAMIAILAPAHGVSLLQIL 166 (364)
T ss_pred ehhHHHHHHHHHhcccHHHHHhhHHHHHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHHHH
Confidence 333455555555444445667999999999999999998887788999999999999876655554 45 789999999
Q ss_pred HhHHHHHHHHHHHHHH
Q 009002 182 IGILPAMFVGVAVNAL 197 (547)
Q Consensus 182 ~~~lp~~iv~~~v~~~ 197 (547)
.+.+|.++++.+++.+
T Consensus 167 ~V~iPat~ig~~~~a~ 182 (364)
T PF03605_consen 167 AVTIPATLIGVLVAAF 182 (364)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999999876543
No 72
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=98.77 E-value=6.2e-07 Score=93.16 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=127.3
Q ss_pred HHHHccCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchh
Q 009002 46 MVIFQVITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTN 119 (547)
Q Consensus 46 l~l~gv~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN 119 (547)
+++.+.++.++..+.+ .-.+.+.+++....+..+..+++-+.+++++....++|+.+++.++++-.++.+|+|-
T Consensus 207 ~~vYr~l~~~~l~~~l~~a~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~ 286 (379)
T COG1593 207 AFVYRELTLKELPKVLLEAVKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDL 286 (379)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccH
Confidence 4567888888766543 3456678889999999999999999999999988889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheee-cCCCChHHHHHhHHHHHHHHHHH
Q 009002 120 DTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAV-QSKIPFGKFLIGILPAMFVGVAV 194 (547)
Q Consensus 120 ~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~-~~~~~f~~f~~~~lp~~iv~~~v 194 (547)
+++.++++|+.+.++++.|+||..+-+...+..++|....|+| .|+.+.+ -++.+..+..|..+|..+..+++
T Consensus 287 ~a~ilil~Pil~Pi~~~~GIDPvhfGvv~v~Nl~IGliTPPvG--~~Lfv~s~V~~~~~~~~~k~i~Pfl~~~~~~ 360 (379)
T COG1593 287 TAAILILTPILLPIAAALGIDPVHFGVVFVLNLSIGLITPPVG--MVLFVASAVGKVPIEAVIKAILPFLVALILV 360 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeeHHHHHHHHHhhCCCCCcc--hhHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988999 5565554 46699999999999987654443
No 73
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=98.77 E-value=2.5e-07 Score=99.37 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=127.0
Q ss_pred HHHhC-CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHH
Q 009002 365 SLLMG-LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAV 443 (547)
Q Consensus 365 ~~~~g-i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~ 443 (547)
+.-.| +.......+|.+++.+.=..+++ ++||++++++.++......+++||..|...+.+.+..+.++....+.
T Consensus 12 g~r~gg~~~g~~g~~g~~~~~~~~~~~~~----~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~ll 87 (430)
T TIGR00770 12 GARLGGIGLGYAGGLGVLILCFGFGLKPG----KIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITIL 87 (430)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhh
Confidence 33333 77777777777776665333443 49999999999999999999999999999887765443222233345
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceee
Q 009002 444 LAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLS 523 (547)
Q Consensus 444 l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~ 523 (547)
+..++.++|-+.+|.-.+..+.| +...+++.+|.|+........+++++|+..||++...|.+ .+.++. .| ++
T Consensus 88 ipii~~lfs~~~g~~~~~l~f~P-I~i~la~~lG~d~i~~~ai~~~aa~iG~~as~in~~~~~~-ig~~~~---~G--i~ 160 (430)
T TIGR00770 88 APSVTYFLTILAGTGHVVYSTLP-VIAEVAKEQGIKPERPLSLAVVSSQIAITASPVSAAVVFM-SAILEP---LG--IE 160 (430)
T ss_pred HHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcccHHHHHH-HHHHHh---CC--CC
Confidence 56677888888899888889999 6688899999998777666778888999999998855444 443211 24 47
Q ss_pred hhhhHhhhhHHHHHHHHHHhh
Q 009002 524 FWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 524 f~df~k~G~p~~li~~iv~~~ 544 (547)
|+|++....|..++.++++.+
T Consensus 161 f~~~l~~rip~~~v~l~v~~~ 181 (430)
T TIGR00770 161 YLDLLMVTIPSTFLGCMLTAF 181 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877654
No 74
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=98.73 E-value=5.1e-07 Score=96.02 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=121.0
Q ss_pred HHHHccCChHHHHhcC----------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009002 46 MVIFQVITPDQAYAAI----------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSA 115 (547)
Q Consensus 46 l~l~gv~~~~~a~~~~----------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~ 115 (547)
..+.+.++.++..+.+ ...++.++++..+.++.++.+|+.|.+++.+...+.+++..++.+.+...++++
T Consensus 231 ~~~~r~~n~~~~~~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~~~~~~~ll~~~l~~~~lg~ 310 (388)
T TIGR00771 231 AEFGRIVNRISPVKITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKESGLGNIFVMWGATIGPFLMAL 310 (388)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3455677777655221 235678899999999999999999999999987766777777777888888999
Q ss_pred hc-hhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee-ecCCCChHHHHHhHHHHHHHHH
Q 009002 116 LF-TNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA-VQSKIPFGKFLIGILPAMFVGV 192 (547)
Q Consensus 116 fl-sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~iv~~ 192 (547)
|+ ++++....+.|++..++++.|+||..+.++...++++|....|+| .|+++. +-.+.+..|..|..+|+.++++
T Consensus 311 ~~~s~~a~~~~~~PIl~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~--~~l~v~~gia~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 311 ITGSGNAPFIAFNTAIPPHAVELGYTHVNLGMPMAIAGALGRTASPIA--GVVVVCAGLAMVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHH--HHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Confidence 99 589999999999999999999999999999999999999999998 455444 5568999999999999887663
No 75
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=98.70 E-value=0.00021 Score=74.52 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=94.8
Q ss_pred cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 009002 398 VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISA 477 (547)
Q Consensus 398 idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~ 477 (547)
..-.+.+.+++--..+..+..+++.+.+++++.+..+ ++.--+..+..+..++..|++-.|+..++.|+ ..-++.+.|
T Consensus 228 ~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~-~~~~~ll~inl~llvvG~fmd~~a~ilil~Pi-l~Pi~~~~G 305 (379)
T COG1593 228 TTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSD-SPLVVLLVINLLLLVVGTFMDLTAAILILTPI-LLPIAAALG 305 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHHhC
Confidence 3445667777788888899999999999999976532 22222233445667788999999999999994 466777789
Q ss_pred CCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHH
Q 009002 478 ADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAI 541 (547)
Q Consensus 478 ~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv 541 (547)
.||.+.-.+..+-.++|..--|+| .|+.+.... ++ .+..++.|--.|.-+..+++
T Consensus 306 IDPvhfGvv~v~Nl~IGliTPPvG--~~Lfv~s~V-----~~--~~~~~~~k~i~Pfl~~~~~~ 360 (379)
T COG1593 306 IDPVHFGVVFVLNLSIGLITPPVG--MVLFVASAV-----GK--VPIEAVIKAILPFLVALILV 360 (379)
T ss_pred CCceeeHHHHHHHHHhhCCCCCcc--hhHHHHHhh-----cC--CCHHHHHHHHHHHHHHHHHH
Confidence 998766566666667777777999 555544422 34 36889999888877655543
No 76
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=98.69 E-value=1.8e-06 Score=92.36 Aligned_cols=146 Identities=18% Similarity=0.304 Sum_probs=123.9
Q ss_pred HHHccCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhh
Q 009002 47 VIFQVITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTND 120 (547)
Q Consensus 47 ~l~gv~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~ 120 (547)
.+.+.+++++..+.+ .-.+.+.+++..+.+..+..+|+.+.+++.+.....+++.+++.+.++..++.+|+|.+
T Consensus 254 ~iyr~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~ 333 (425)
T PRK15060 254 VIYREMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLT 333 (425)
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHH
Confidence 357888988876653 34566788899999999999999999999998877788888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee-ecCCCChHHHHHhHHHHHHHHHHH
Q 009002 121 TSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA-VQSKIPFGKFLIGILPAMFVGVAV 194 (547)
Q Consensus 121 ~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~iv~~~v 194 (547)
++.+++.|+...++++.|+||..+-+...+...+|....|+|. |+++. +-.+.++.|..+..+|.....+++
T Consensus 334 a~ili~~Pil~Pi~~~~Gidpv~fgii~~~~~~ig~iTPPvG~--~lfv~~~ia~~~~~~i~~~~~Pf~~~~~~~ 406 (425)
T PRK15060 334 PTVLILTPVLMPLVKEAGIDPIYFGVMFIINCSIGLITPPVGN--VLNVISGVAKLKFDDAVRGVFPYVLVLYSL 406 (425)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCCCCccH--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888778885 55554 345799999999999987665543
No 77
>COG1288 Predicted membrane protein [Function unknown]
Probab=98.67 E-value=1e-05 Score=84.77 Aligned_cols=129 Identities=13% Similarity=0.070 Sum_probs=89.4
Q ss_pred HHHHHhcHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhh
Q 009002 77 VYLESADMFKYLGRMLSWKSRG-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIG 155 (547)
Q Consensus 77 ~~l~~sG~~~~ia~~i~~~~~~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~G 155 (547)
..+.|||.+|.--..+.++.++ +..++..++.+-++..++.-.-=-++-+.|+.+.+..+.|.|+..-.-.+-.++.+
T Consensus 111 GIvnkTGaid~Gi~ali~k~kG~e~llI~~l~ilFslgGt~~Gm~EEaiaFypIliPv~ialGyDsi~~va~i~lgt~i- 189 (481)
T COG1288 111 GIVNKTGAIDAGIAALIRKTKGKEFLLIPVLFILFSLGGTVFGMGEEAIAFYPILIPLMVALGYDSITGVAIIYIGTQI- 189 (481)
T ss_pred eeeeccchHHHHHHHHhhhcCCCeEEEeeHHHHHHHhccccccchHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcc-
Confidence 3468999999988888877765 45666666666666666666555567788888888889999987655555566666
Q ss_pred ccccccCcccchhee-ecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 009002 156 SSATPIGNPQNLVIA-VQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKL 206 (547)
Q Consensus 156 g~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~l 206 (547)
|+++..=||-...++ +..|+++.|=+..-+...++..+.++.|++++.+|.
T Consensus 190 G~~~St~NPF~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~Kv 241 (481)
T COG1288 190 GFAASTMNPFATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYASKV 241 (481)
T ss_pred chhhhhcCchHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444478777665 457888876555555666666666666776666654
No 78
>PRK10034 fructuronate transporter; Provisional
Probab=98.65 E-value=0.00028 Score=76.12 Aligned_cols=153 Identities=11% Similarity=0.093 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHccCChHHHHhc----C---ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHH
Q 009002 36 TAGSLLGAMLMVIFQVITPDQAYAA----I---DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICL 108 (547)
Q Consensus 36 ~~~al~~~~~l~l~gv~~~~~a~~~----~---~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~ 108 (547)
..+.+++++.+.++.-.++++..+. + -.+..+.+....+++..+++||..+++++.+.+..+++ +..+.+++
T Consensus 28 fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~k-r~~~a~~l 106 (447)
T PRK10034 28 MVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLR-YVQLSVII 106 (447)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 3556777777777777777765433 2 23444566666779999999999999999998776544 33333334
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhcc-ccccCcccchheeecCCCChHHHHHhHHHH
Q 009002 109 ISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSS-ATPIGNPQNLVIAVQSKIPFGKFLIGILPA 187 (547)
Q Consensus 109 ~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~-~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~ 187 (547)
.+.+++--+=-|.+..++.|++.+++|+.|.++..+.++++.+....-. ..| +|--+-+.+..|.+..+.+.+|++.
T Consensus 107 ~g~llGi~vF~dv~~v~laPi~~~lak~~~~s~~~~~~~l~~gl~~~h~lvPP--~Pgpla~a~~l~a~lG~~il~Gl~v 184 (447)
T PRK10034 107 IGLIFGLAMFYEVAFIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPP--QPGPVALVNAYGADMGMVYIYGVLV 184 (447)
T ss_pred HHHHHhhHHHHHhHHHhhHHHHHHHHHHhCcCHHHHHHHHHHHHHHhhcccCC--CCcHHHHHHHhCCcHHHHHHHhhHH
Confidence 4444433333456778899999999999999999988888877775543 333 5555556677888899999888766
Q ss_pred HHHH
Q 009002 188 MFVG 191 (547)
Q Consensus 188 ~iv~ 191 (547)
.+..
T Consensus 185 ~ip~ 188 (447)
T PRK10034 185 TIPS 188 (447)
T ss_pred HHHH
Confidence 6555
No 79
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=98.64 E-value=3e-05 Score=80.61 Aligned_cols=336 Identities=17% Similarity=0.167 Sum_probs=182.6
Q ss_pred CChHHHHhcC---ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhHHHHHHH
Q 009002 52 ITPDQAYAAI---DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDTSCVVLT 127 (547)
Q Consensus 52 ~~~~~a~~~~---~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~~v~i~~ 127 (547)
...+++.+.+ ++.--++++.+|++++.=----+.++.-+.+.+..+ ++...-+.++.++-++++|++..++..+-.
T Consensus 84 ~G~~~a~~Y~~srnytEplFVfvIMviA~SrPIl~~a~~~v~~iArlp~~s~~a~~~~~L~~~PLlGSfITEpaAMTlaA 163 (438)
T PF07399_consen 84 EGWKAAIAYLESRNYTEPLFVFVIMVIAASRPILQFAERLVRFIARLPKPSPVAWWWLILTLVPLLGSFITEPAAMTLAA 163 (438)
T ss_pred cCHHHHHHHHhccCCCccHHHHHHHHHHccchHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 3455555554 455557788888887654444444555555555332 355556667777888999999988755432
Q ss_pred HHHHHHHHHc-CCCchH-H-HHHHH---HHHhhhccccccCcccchheeecCCCCh----HHHHHhHHHHHHHHHHHHHH
Q 009002 128 EFVLKIARQH-NLPPHP-F-LLALA---SSANIGSSATPIGNPQNLVIAVQSKIPF----GKFLIGILPAMFVGVAVNAL 197 (547)
Q Consensus 128 Pi~~~ia~~~-~~~p~~-~-l~~~a---~aa~~Gg~~TpiG~p~Nliv~~~~~~~f----~~f~~~~lp~~iv~~~v~~~ 197 (547)
+-++++. ..+|++ + ...+. ..-++||.+|+...||=+++.+..+-+. .+|-.. ..++++++..
T Consensus 164 ---llL~~~~f~~~~s~~lkYaTLGvLFvNISIGGtLT~fAAPPVLMVA~~w~Wd~~fM~~~FGWK----Aaiai~ina~ 236 (438)
T PF07399_consen 164 ---LLLRDQFFRLGPSPRLKYATLGVLFVNISIGGTLTSFAAPPVLMVASTWGWDSAFMLTHFGWK----AAIAILINAT 236 (438)
T ss_pred ---HHHHHHhccCCCCHHHHHHHHHHHheEeeecccccccccCcceeEecccCCChHHHHHHcCHH----HHHHHHHHHH
Confidence 2234442 333332 1 11222 2345899999999999999998766433 233211 2334444555
Q ss_pred HHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCCCCCCCchhhhhhhhcc
Q 009002 198 ILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPNVNGNGSHAETLRNRTS 277 (547)
Q Consensus 198 ~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (547)
..++++||.+.+-++.. + +
T Consensus 237 ~~~~~fRkel~~l~~~~---------~----~------------------------------------------------ 255 (438)
T PF07399_consen 237 VYTLLFRKELARLPKTA---------Q----A------------------------------------------------ 255 (438)
T ss_pred HHHHHHHHHHHhccccc---------c----c------------------------------------------------
Confidence 55677787774211000 0 0
Q ss_pred ccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccccchhhHHHHHHHHHHH
Q 009002 278 LVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKESLSSEWKRVLRKSCVYL 357 (547)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (547)
.+ + +++..++ +..+.=+
T Consensus 256 ----------------------------------~~-----------------------~--~~~~vP~----~v~~vHl 272 (438)
T PF07399_consen 256 ----------------------------------TT-----------------------S--SEERVPW----WVILVHL 272 (438)
T ss_pred ----------------------------------cc-----------------------c--ccCCCCH----HHHHHHH
Confidence 00 0 0000111 1111111
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCChHHHHh-hcChhH---HHHHHHHHHHHHHHHHhCHHHHHHHHhhhhh
Q 009002 358 ITLGMLVSLLMGLNMSWTAITAALALVVLDFKDARPSLE-KVSYSL---LIFFCGMFITVDGFNKTGIPSALWEFMEPYA 433 (547)
Q Consensus 358 i~~~~i~~~~~gi~~~~~al~~a~~l~~~~~~~~~~~~~-~idw~~---ll~f~glf~l~~al~~tG~~~~ia~~l~~~~ 433 (547)
++++.++. .+- .+..+|+..+++++..+.-+-++ +++++- +=||.+.+++-+++++- |+...+.+.
T Consensus 273 ~f~g~V~~--ahh---p~iF~G~lfLfFLGf~~ay~~yQ~~l~Lre~lLVgFFLaGLVvlGglQ~W----Wlqpll~~m- 342 (438)
T PF07399_consen 273 LFVGVVVF--AHH---PVIFMGALFLFFLGFTQAYKRYQSPLILREALLVGFFLAGLVVLGGLQQW----WLQPLLSGM- 342 (438)
T ss_pred HHHHHHHH--hcC---hHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHhhHHHcCchHHH----HHHHHHhcC-
Confidence 12222221 122 23455655555555422211111 233332 22444555566666665 444433221
Q ss_pred hcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccc
Q 009002 434 EIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAH 513 (547)
Q Consensus 434 ~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~ 513 (547)
+ -..++.-+..+|.|.+|-+.+=+-.- + .+.++ ..-.+++.|+-.||-+|-|+-.+|..-+.++|
T Consensus 343 --~----~~~lf~ga~~LTa~tDNAalTYLgsl-v-------~g~sd-~~kYalVAGAVtGGGLTVIANAPNpaG~aiLr 407 (438)
T PF07399_consen 343 --S----PLALFFGATALTAFTDNAALTYLGSL-V-------PGLSD-AFKYALVAGAVTGGGLTVIANAPNPAGQAILR 407 (438)
T ss_pred --C----hhHHHHHHHHHHHHhhhHHHHHHHHh-c-------cCCCH-HHHHHHHhheeccCceeEeccCCChhhHHHHh
Confidence 1 12445568899999999886655321 1 13333 23457888889999999999999999999998
Q ss_pred cCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 514 RAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 514 ~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
++-+++ .++-..-+--.++.|++...+..+
T Consensus 408 ~~F~d~-~Is~~~L~l~AL~PT~ia~~~F~l 437 (438)
T PF07399_consen 408 KHFPDG-SISPLGLFLAALPPTLIAALAFWL 437 (438)
T ss_pred ccCCCC-CcChHHHHHHHHhHHHHHHHHHHh
Confidence 865432 135565666778888887766543
No 80
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=98.64 E-value=0.00022 Score=76.29 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHHHHccCChHHHHhc----CCh---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHH
Q 009002 33 IGRTAGSLLGAMLMVIFQVITPDQAYAA----IDL---PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCR 105 (547)
Q Consensus 33 i~~~~~al~~~~~l~l~gv~~~~~a~~~----~~~---~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~ 105 (547)
+|.-.+..+++.+..+.+-.+..+..+. +.. ..-..+.-.-+++..+|+||..+++|+.+.++. ++++..+.
T Consensus 23 v~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~-G~kr~~~A 101 (442)
T COG2610 23 VHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKF-GEKRALLA 101 (442)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-CcchHHHH
Confidence 3433555666655555555666655533 221 111222233567899999999999999998765 45567888
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh-hccccccCcccchheeecCCCChHHHHHhH
Q 009002 106 ICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANI-GSSATPIGNPQNLVIAVQSKIPFGKFLIGI 184 (547)
Q Consensus 106 i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~-Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~ 184 (547)
+.+.+++++--+.=+...+++.|++.+++|+.|+++..+..|++-+... .++..| +|.-+-.....|.+...-...+
T Consensus 102 l~l~g~i~~~~vF~dv~~v~l~Pia~alak~~~is~~~i~v~la~g~~~~h~~vpP--~Pgpia~a~~~~a~~g~~il~g 179 (442)
T COG2610 102 LVLAGLILGIPVFFDVGFVLLIPLAFALAKEAGISLLKIAVPLAAGLSVTHMFVPP--HPGPIAAAGPFGADIGTVILYG 179 (442)
T ss_pred HHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcccCCC--CCchhhhhhhcCcchhHHHHHH
Confidence 8888888888899999999999999999999999998888888877743 344444 4444445566666655555555
Q ss_pred HHHHHH
Q 009002 185 LPAMFV 190 (547)
Q Consensus 185 lp~~iv 190 (547)
....+.
T Consensus 180 ~ivaip 185 (442)
T COG2610 180 LIVAIP 185 (442)
T ss_pred HHHHHH
Confidence 544444
No 81
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=98.64 E-value=0.00023 Score=79.79 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC
Q 009002 399 SYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAA 478 (547)
Q Consensus 399 dw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~ 478 (547)
.-.+.+..++.-+++..+..+|+.+.+++.+.+..+.+....+.....+..++..+++.+|+..++.|++ .-+.++.|.
T Consensus 390 ~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lilGm~l~~~a~~ii~~pi~-~P~l~~lGi 468 (613)
T TIGR02123 390 AVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIILGMGLPTTANYIITATLA-APALIALGV 468 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHcCC
Confidence 3466777788888899999999999999999775432222233344456778899999999999999954 455667899
Q ss_pred CchHHHHHHHHHHHhhcChhhhh
Q 009002 479 DEKKAWLILAWVSTVAGNLSLVG 501 (547)
Q Consensus 479 ~~~~~~~~l~~~~~~gg~~TpiG 501 (547)
||-..-+...+.+.+|..--|+|
T Consensus 469 dpi~~~~~v~~~~~ig~iTPPvg 491 (613)
T TIGR02123 469 PPIAAHMFVFYFGILADITPPVA 491 (613)
T ss_pred CHHHHHHHHHHHHHHHcCCCCch
Confidence 87544444445555544444666
No 82
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=98.44 E-value=1.3e-05 Score=82.01 Aligned_cols=165 Identities=16% Similarity=0.311 Sum_probs=111.0
Q ss_pred cCCCccchHHHHHHHHHHHH-HHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-CCchhHHH
Q 009002 27 AVPFLPIGRTAGSLLGAMLM-VIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKS-RGPKDLLC 104 (547)
Q Consensus 27 ~~~~~pi~~~~~al~~~~~l-~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~-~~~~~ll~ 104 (547)
+.+.+.++ .+.=+|...+ ..+| ++| ...++++++.+++...-+++++.+|-.|++-+.--|.- ++|+++-.
T Consensus 18 R~GGIglG--~~GGlGv~il~f~f~-~~P----~~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~iT~ 90 (436)
T COG2704 18 RLGGIGLG--VAGGLGVLILVFIFG-LKP----GKPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKYITI 90 (436)
T ss_pred cccceeee--ecccccHHHHhhhhc-CCC----CCCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCeEEE
Confidence 35555555 2222333333 3444 444 34889999999999999999999999999865433322 35654433
Q ss_pred HHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee--ecCCCChHHHH
Q 009002 105 RICLISAISSALFTNDTS-CVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA--VQSKIPFGKFL 181 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~~-v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~--~~~~~~f~~f~ 181 (547)
.==+++.+++ |+..|.- +.-.+|++-.++++.|+.|++-+-.-..++.++-.++||..-.--+.. +..|.++.+-+
T Consensus 91 lAP~Vty~lT-~maGTGh~vySilPVI~eVA~~~gIrPeRPls~avVsSQ~aItASPISAAVV~~~a~l~~~g~~~l~ll 169 (436)
T COG2704 91 LAPFVTYTLT-ILAGTGHVVYSILPVIAEVAKKNGIRPERPLSAAVVSSQIAITASPISAAVVYMSAVLEPLGISYLTLL 169 (436)
T ss_pred ehhHHHHHHH-HhhcCCceeeeehhHHHHHHHHcCCCCCCcchHHHHHhhhhhhcCchHHHHHHHHHHHhhcCcchheee
Confidence 3333444444 3444544 446889999999999999998877888999999999998654332222 34556677777
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 009002 182 IGILPAMFVGVAVNALIL 199 (547)
Q Consensus 182 ~~~lp~~iv~~~v~~~~~ 199 (547)
.+..|.++++..+..++.
T Consensus 170 ~v~IPaTl~g~~~~~l~~ 187 (436)
T COG2704 170 MVTIPSTLLGVLLMALFV 187 (436)
T ss_pred eEEecHHHHHHHHHHHHH
Confidence 888999998877654433
No 83
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=98.41 E-value=1.9e-05 Score=72.08 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=94.9
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH-hcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhh
Q 009002 361 GMLVSLLMGLNMSWTAITAALALVV-LDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVG 439 (547)
Q Consensus 361 ~~i~~~~~gi~~~~~al~~a~~l~~-~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 439 (547)
.++++...++|.+..++..+.++-. ....+.+|+++..+|++.+...|.--+-+=.++.|-.|+++++.....+....-
T Consensus 14 ~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~l 93 (149)
T PF07158_consen 14 VIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPAL 93 (149)
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcee
Confidence 3444455568999999988876653 456788999999999999999999999999999999999999997765433333
Q ss_pred HHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcCCch
Q 009002 440 GIAVLAAVILVLSNLAS-NVPTVLLLGGRVAASAAAISAADEK 481 (547)
Q Consensus 440 ~~~~l~~v~~~lS~~is-N~p~~~ll~P~ia~~~a~~~~~~~~ 481 (547)
-.+++++++.++|.+=. +.|+.+++.| ++...|++.+.||-
T Consensus 94 iP~v~f~~~~~lsa~G~g~~~~~Ai~aP-ia~~lA~~~gi~p~ 135 (149)
T PF07158_consen 94 IPWVMFLLAAVLSAIGAGSIAAVAIMAP-IAMSLARRTGINPL 135 (149)
T ss_pred hHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHHHHHhCCCHH
Confidence 34577788888888854 6677777788 78899999999874
No 84
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=98.30 E-value=2.6e-05 Score=83.98 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=119.5
Q ss_pred HccCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHH
Q 009002 49 FQVITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTS 122 (547)
Q Consensus 49 ~gv~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~ 122 (547)
.+..++++..+.+ .-...+.+++..+++..+..+|+.+.+++.+....++++..+..+.++..++.++++.+++
T Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~~~~~~l~l~~l~~lilG~~m~~~a~ 335 (416)
T PF06808_consen 256 YRRLSWKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSGSPWLVLLLIMLILLILGMFMDTTAA 335 (416)
T ss_pred hcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCcchHHHHHHHHHHHHHHhccccHHHH
Confidence 5788888876654 2346678888999999999999999999999887777877888888889999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee-ecCCCChHHHHHhHHHHHHHHH
Q 009002 123 CVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA-VQSKIPFGKFLIGILPAMFVGV 192 (547)
Q Consensus 123 v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~iv~~ 192 (547)
.++..|+...+.++.|+||..+-+.+.+.+.+|...-|+|- |+++. +-.+.++.+-.+..+|...+-.
T Consensus 336 ~ii~~pi~~P~~~~~Gidpi~~g~~~~~~~~ig~iTPPvgl--~lfva~~ia~~~~~~i~~~~~Pf~~~~~ 404 (416)
T PF06808_consen 336 IIIVAPILAPIAQALGIDPIHFGVFMFYNAEIGLITPPVGL--NLFVAAGIAGVPMEKIFRGILPFIFVLL 404 (416)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhcCCCCCccH--HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999776667774 45554 3457888999998889876543
No 85
>COG2056 Predicted permease [General function prediction only]
Probab=98.28 E-value=0.0026 Score=65.25 Aligned_cols=158 Identities=10% Similarity=0.054 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHccCChHHHHhcCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCC---ch---hHHHHH
Q 009002 39 SLLGAMLMVIFQVITPDQAYAAID------LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRG---PK---DLLCRI 106 (547)
Q Consensus 39 al~~~~~l~l~gv~~~~~a~~~~~------~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~---~~---~ll~~i 106 (547)
-.++++.--++|-++.+|..+.+. -++-+--+-+=..+.++.+||+.|.+++++.+..++ .+ ..=+.+
T Consensus 25 L~isAlvaGl~~gl~l~eti~~f~~GlgG~a~vALSYalLGafAvaIsksGltd~l~~kvi~~i~~~~~~~~~~~~K~~l 104 (444)
T COG2056 25 LIISALVAGLVGGLGLTETINAFISGLGGNANVALSYALLGAFAVAISKSGLTDVLAKKVIRLLGGDESRRGKTLKKYLL 104 (444)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccccchhhHHHHH
Confidence 344555555677777777665542 233333333345677899999999999998865443 11 111333
Q ss_pred HHHHHHHhhhchhhHH-----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCccc---chheee----cCC
Q 009002 107 CLISAISSALFTNDTS-----CVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQ---NLVIAV----QSK 174 (547)
Q Consensus 107 ~~~~~~lS~flsN~~~-----v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~---Nliv~~----~~~ 174 (547)
++.-.++|.|..|..- .=+++|-.+.+-.++++|.+.....+.|+-..--+..|+|-.+ +++..+ ..+
T Consensus 105 ~~~i~~~a~~SQNliPVHIAFIPilIPPLL~lfn~LkiDRR~vAc~ltFGL~apYi~LPvGFG~IF~~ii~~n~~~a~~~ 184 (444)
T COG2056 105 LLIILLIACFSQNLIPVHIAFIPILIPPLLSLFNKLKIDRRLVACVLTFGLTAPYILLPVGFGLIFQSIILDNINAAGVS 184 (444)
T ss_pred HHHHHHHHHhcCCccceeeeeehhhhhHHHHHHHHhhhhHHHHHHHhhcccccceeEecchHHHHHHHHHHHHHHhcCCC
Confidence 4445556777777633 3367788889999999998877666666665555666777442 333321 234
Q ss_pred CChHHHHHhHHHHHHHHHHHHHH
Q 009002 175 IPFGKFLIGILPAMFVGVAVNAL 197 (547)
Q Consensus 175 ~~f~~f~~~~lp~~iv~~~v~~~ 197 (547)
.+..+-.+.+..+. +++++..+
T Consensus 185 ~~~~~V~~am~ip~-lgMi~GLl 206 (444)
T COG2056 185 LSVNQVPKAMWIPG-LGMIVGLL 206 (444)
T ss_pred cchhhhHHHHHHHH-HHHHHHHH
Confidence 66777666555443 24444443
No 86
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=98.23 E-value=0.0045 Score=67.41 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCC
Q 009002 61 IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLP 140 (547)
Q Consensus 61 ~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~ 140 (547)
.+++-+.++.-+|.=....|+||+++..-++..++. |++.+..+.++..++|...+..+. +++.|+...+....|.+
T Consensus 86 ~~F~pLG~vlv~mlgvgvae~sG~i~a~i~~~v~~~--p~~~it~ivvf~gv~s~~asdaGy-Vvl~PL~a~if~a~Gr~ 162 (508)
T PRK11339 86 SGFAPLGAILALVLGAGLAERVGLLPALMVKMASHV--NARYASYMVLFIAFFSHISSDAAL-VIMPPMGALIFLAVGRH 162 (508)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHcCCC
Confidence 357788888888888888999999999999887653 445555556666777777766665 77999999999999999
Q ss_pred chHHHHHHHHHHhhhccc
Q 009002 141 PHPFLLALASSANIGSSA 158 (547)
Q Consensus 141 p~~~l~~~a~aa~~Gg~~ 158 (547)
|.. -++.+|++-.||+.
T Consensus 163 Pla-Gia~~fagvs~Gfs 179 (508)
T PRK11339 163 PVA-GLLAAIAGVGCGFT 179 (508)
T ss_pred hHH-HHHHHHHHHHhhhh
Confidence 954 56777777766543
No 87
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=98.13 E-value=0.017 Score=63.51 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=75.1
Q ss_pred HHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhh
Q 009002 77 VYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALF-TNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIG 155 (547)
Q Consensus 77 ~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~G 155 (547)
+.-..+|.-+....+..+.. .|..++...++.++++|.-+ +...++...-|....+++..+.|+-...-+..-+|-.|
T Consensus 97 ~~w~~~g~v~~~~~~gL~~i-~~~~~~~~~f~~t~ivs~~~gts~gt~~t~~~~l~~I~~~~gap~~l~agai~~GAyfg 175 (485)
T COG1757 97 AAWAASGIVPALVYYGLKLI-SPSIFFFDDFFITAIVSTATGTSWGTAATSGPALAGIGDSTGAPLALTAGAILSGAYFG 175 (485)
T ss_pred HHHHHcCChhHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33344444444444433221 23333333333344333322 33466788999999999999998755555677889999
Q ss_pred ccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHH
Q 009002 156 SSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNA 196 (547)
Q Consensus 156 g~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~ 196 (547)
..+.|+.+.+|+ .....+..+.|-.++++...+...++..
T Consensus 176 d~ispisdTt~~-aa~~~~~~~~~~i~~~~y~~~~~~iv~~ 215 (485)
T COG1757 176 DKISPLSDTTIL-AAGTQGVDLVDHIKSNFYTTIPAFILAL 215 (485)
T ss_pred hhhhHhHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 4444557788888887777666655543
No 88
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=98.10 E-value=0.00032 Score=78.71 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=116.9
Q ss_pred HccCChHHHHhcCC------hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhchhhH
Q 009002 49 FQVITPDQAYAAID------LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRICLISAISSALFTNDT 121 (547)
Q Consensus 49 ~gv~~~~~a~~~~~------~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~~~~lS~flsN~~ 121 (547)
.+.+++++..+.+. -.+.+.+++.-+++..+..+|+.+.+++.+....+ +++..+..+.++..++.++++.++
T Consensus 371 ~r~l~~~~l~~~l~~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lilGm~l~~~a 450 (613)
T TIGR02123 371 DTRMGLGEIFGALEDGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIILGMGLPTTA 450 (613)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 35678877665542 35667888889999999999999999999988776 567777888888899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee-ecCCCChHHHHHhHHHHHHHHHHH
Q 009002 122 SCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA-VQSKIPFGKFLIGILPAMFVGVAV 194 (547)
Q Consensus 122 ~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~-~~~~~~f~~f~~~~lp~~iv~~~v 194 (547)
+.+++.|+...+.++.|+||..+-+.+.+.+.+|....|+|- |+++. +-.+.++.+-.+..+|..+...++
T Consensus 451 ~~ii~~pi~~P~l~~lGidpi~~~~~v~~~~~ig~iTPPvgl--~lfvaa~Ia~~~~~~~~~~~~p~~~~~~~~ 522 (613)
T TIGR02123 451 NYIITATLAAPALIALGVPPIAAHMFVFYFGILADITPPVAL--AAFAAAGIAGADPMKTGFEAFKLALAGYLV 522 (613)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCchH--HHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999899999998666556663 55554 345678888888888887766554
No 89
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=98.07 E-value=0.031 Score=61.21 Aligned_cols=94 Identities=19% Similarity=0.124 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc
Q 009002 62 DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPP 141 (547)
Q Consensus 62 ~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p 141 (547)
+.+-+.++.-+|+=....|+||+++..-++..++. |++.+..+.++..++|...+..+. +++.|+...+....|.+|
T Consensus 83 ~f~pLg~vlv~mlGvGvae~tG~i~a~i~~~v~~~--p~~~~t~ivv~~gv~s~~asdaG~-vvl~PL~a~if~a~Gr~P 159 (513)
T TIGR00819 83 GFAPLGAILALLLGAGIAEKSGLIPALMRKLASHS--NAKLASFMVLFIAFFSHIASDAAL-VILIPLGALIFHALGRHP 159 (513)
T ss_pred cCccHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHcCCCh
Confidence 34444444333333777899999999999887653 455555556667777777766665 779999999999999999
Q ss_pred hHHHHHHHHHHhhhcccc
Q 009002 142 HPFLLALASSANIGSSAT 159 (547)
Q Consensus 142 ~~~l~~~a~aa~~Gg~~T 159 (547)
.. -++.+|++-.||+..
T Consensus 160 la-Gia~~fagvs~GFsA 176 (513)
T TIGR00819 160 LA-GLAAAFAGVGCGFSA 176 (513)
T ss_pred HH-HHHHHHHHHhhhhhc
Confidence 54 567888887777654
No 90
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=98.04 E-value=0.038 Score=61.06 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=84.6
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHH
Q 009002 395 LEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLA--SNVPTVLLLGGRVAASA 472 (547)
Q Consensus 395 ~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~i--sN~p~~~ll~P~ia~~~ 472 (547)
.|+. |+..+.....+.++.-|.++|....+++.+.+ .+ .. ...+.-+..++..|+ ||+..-+++.+ +....
T Consensus 382 ~~~~-~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G--~~--yp~~aP~lG~lG~FiTGS~T~SN~lF~~-lQ~~~ 454 (522)
T PF02652_consen 382 LKQL-WPPAIAIIFFLALAYVMNYSGMTATLALALAA-TG--AA--YPFFAPFLGWLGSFITGSNTSSNALFGP-LQVTT 454 (522)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hC--cc--HHHHHHHHHHHhcccccchHHHHHHHHH-HHHHH
Confidence 4444 78889999999999999999999999998865 32 11 112233445666666 58888888888 78889
Q ss_pred HHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHH
Q 009002 473 AAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIG 542 (547)
Q Consensus 473 a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~ 542 (547)
|++.|.||. ++..+ -+.||..--+-|+.|+......-. ..|. + .+-+|..+|.+++..++.
T Consensus 455 A~~lgl~~~--l~~Aa--q~~Gg~~g~mIsp~~i~~a~a~~g-~~g~-E---g~ilr~t~~~~l~~~~i~ 515 (522)
T PF02652_consen 455 AQQLGLPPL--LIAAA--QNVGGAMGNMISPQNIVAAAAAVG-LSGK-E---GEILRKTLPPSLIYALIV 515 (522)
T ss_pred HHHcCCCHH--HHHHH--HHHHHHHHhccCHHHHHHHHHHhc-CCCc-H---HHHHHHHHHHHHHHHHHH
Confidence 999998863 22222 334433322335777764433211 1222 2 567777887777666543
No 91
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=97.93 E-value=0.00032 Score=76.16 Aligned_cols=122 Identities=11% Similarity=0.018 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh-hhchhhHHHHHHHHHHHHHHHHcCCCch
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISS-ALFTNDTSCVVLTEFVLKIARQHNLPPH 142 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS-~flsN~~~v~i~~Pi~~~ia~~~~~~p~ 142 (547)
+++.++...+.++..++++|.+|.+.+++.++.++++++.+...+.+.+.+ .+.||..+.++.-|+...+.+|.|++|.
T Consensus 310 ~~i~lii~~~~lggil~~~G~l~~l~~~l~~~i~s~~~~~l~t~~~~~i~~~i~~~~~~sil~~G~~~k~~~d~~~i~r~ 389 (454)
T TIGR00931 310 WSLSLVMIALTFGGVLQRIGVLDVILQSANKKIISTWTFDCSTSTSSIGVNVVTCEQYLSILLPGKTFESFYTKLNLAKK 389 (454)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHcCCCcceehHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHcCCCHH
Confidence 366677777889999999999999999998888887777766666666665 3577778888999999999999999999
Q ss_pred HHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHH
Q 009002 143 PFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILP 186 (547)
Q Consensus 143 ~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (547)
++-..+.-++...+.+-|.+ ..-.+..+.-|.+..+|.+..+.
T Consensus 390 ~LA~~ld~s~t~~~~LiPws-~~g~~~~~~lgv~~~~~iPy~fy 432 (454)
T TIGR00931 390 NLSRTLEDAGTLVNPLIPWG-VSGAYMAGTLGVDTISYLPFAFL 432 (454)
T ss_pred HHHHHHHhhhhhhhhHHHHH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 98777776666666666763 33444445556777777655443
No 92
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=97.88 E-value=0.0015 Score=66.20 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=85.7
Q ss_pred HHHHHHHHHHccCChHHHHhcCChhHHHH---------HHHHHHHHHHH--HHhcHHHHHHHHHHhhcCC-chh-HHHHH
Q 009002 40 LLGAMLMVIFQVITPDQAYAAIDLPILGL---------LFGTMVVSVYL--ESADMFKYLGRMLSWKSRG-PKD-LLCRI 106 (547)
Q Consensus 40 l~~~~~l~l~gv~~~~~a~~~~~~~~i~~---------l~~~~il~~~l--~~sG~~~~ia~~i~~~~~~-~~~-ll~~i 106 (547)
..|.+...+.|..+.+-..+.+.++.... ....++.+-.+ .+..+-+. +.+..+. +.+ ....+
T Consensus 31 ~mGi~a~~isg~~~~~L~~~a~~~p~~~~~~~~ipiGI~~aVl~aGllF~~~~~~~~~~----i~~~~~~i~~k~~vfl~ 106 (347)
T PF07854_consen 31 VMGIAAVTISGFWSLELIEEALKNPVLIYQIGGIPIGITQAVLVAGLLFYYFRHKIKRA----IASILDKIPLKVFVFLL 106 (347)
T ss_pred HHHHHHHHHHccccHHHHHHHHhCceeehcccCCccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCHHHHHHHH
Confidence 45667788899998876555554444332 11111111111 12222222 2222232 444 44455
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHH
Q 009002 107 CLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILP 186 (547)
Q Consensus 107 ~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp 186 (547)
..+-.+.|++++-..+++++.-++-.+--+. .+..++..--+|+-.+|+.+||+|-|...++.+.-+-+|+-.+....+
T Consensus 107 vviLGL~SSiITAIIAAliLvEIv~~lpl~R-~~Kv~~~ViaCFsIGlGAaLTPiGEPLSTIaVSKL~a~F~yL~~~lg~ 185 (347)
T PF07854_consen 107 VVILGLSSSIITAIIAALILVEIVNALPLDR-KSKVKLVVIACFSIGLGAALTPIGEPLSTIAVSKLNADFFYLFRLLGI 185 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEEeehhHHHHhcCccccCCCCCcHHHHHHHHcccHHHHHHHHHH
Confidence 5667788999999888888876653222111 122244455567777899999999999999988877777555554445
Q ss_pred HHHHHHH
Q 009002 187 AMFVGVA 193 (547)
Q Consensus 187 ~~iv~~~ 193 (547)
..+.+++
T Consensus 186 yIi~~vl 192 (347)
T PF07854_consen 186 YIIPGVL 192 (347)
T ss_pred HHHHHHH
Confidence 5444433
No 93
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=97.84 E-value=0.0014 Score=70.29 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHHHH--hhcC---CCccchHHHHHHHHHHHHHHH---ccCChHHHH-------hcCC---hhHHHH
Q 009002 7 VKVVLGSIAFAIFWVMAV--FPAV---PFLPIGRTAGSLLGAMLMVIF---QVITPDQAY-------AAID---LPILGL 68 (547)
Q Consensus 7 ~k~~~a~~~~~~~~~~~~--~~~~---~~~pi~~~~~al~~~~~l~l~---gv~~~~~a~-------~~~~---~~~i~~ 68 (547)
....+|++=++=..++.. +.+. +.+.++...+.+++..+.++. +.-+.++.+ ++.. -+++.+
T Consensus 240 ~p~~YAlLP~lPliLil~~~f~~~~~~~~i~l~v~~am~is~~ia~l~e~ir~r~~k~~~~~~~~ff~GMG~~f~~VV~L 319 (455)
T PRK09804 240 PPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTL 319 (455)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccccCceeecHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777754441112222 2211 123345444455555444333 333444443 3333 257778
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 009002 69 LFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALF-TNDTSCVVLTEFVLKIARQHNLPPHPFLLA 147 (547)
Q Consensus 69 l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~ 147 (547)
+.+.=+.+++++..|+.|.+-+......-+.......+..++++.+..+ |.++...-+.|++-.+|++.|++|..+.+|
T Consensus 320 IVAA~vFa~GL~aiG~Id~Li~~~~~~g~g~~~~~lv~~~i~~l~a~l~GSGnAaffAF~~lvp~iA~~~G~~~~~l~lp 399 (455)
T PRK09804 320 VVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMP 399 (455)
T ss_pred HHhHHHHHhHHHHhhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHhHHHHHHcCCCHHHHHHH
Confidence 8888999999999999999998876554445444444445555544433 566777789999999999999999999999
Q ss_pred HHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHHHH
Q 009002 148 LASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALILL 200 (547)
Q Consensus 148 ~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~ 200 (547)
..+++|+|=..+|+. +.=+.+.+..+.+-.|-.|-..++.++++++.+++.+
T Consensus 400 mq~as~lgRt~SPVa-gviIavAg~a~vSP~eiVKRTavPml~g~i~~~i~~~ 451 (455)
T PRK09804 400 MHFATTLARAVSPIT-AVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIATI 451 (455)
T ss_pred HHHHHhhccccCchh-hHHhhhccccCCCHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999994 5556666788999999999988888888877654433
No 94
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=97.77 E-value=0.045 Score=56.71 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHh---hcCCchhHHHHHHHHHHHHhhhchhhHH-----HHHHHHHHHHHHH
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSW---KSRGPKDLLCRICLISAISSALFTNDTS-----CVVLTEFVLKIAR 135 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~---~~~~~~~ll~~i~~~~~~lS~flsN~~~-----v~i~~Pi~~~ia~ 135 (547)
+..+.++..+-.++.++++|.-+.+-+...| .-|+|+.++..-.+++.++|.+++..+= .+.+.|+..+
T Consensus 74 gLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ikspy~ll~~ay~i~~~m~~ai~SAtGlg~llmaTLfPvlv~--- 150 (451)
T COG3069 74 GLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIKSPYLLLIAAYFVACLMSLAIPSATGLGVLLMATLFPVLVN--- 150 (451)
T ss_pred cHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhcccHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHH---
Confidence 4456677777888999999999999887764 3467888888888899999998887532 3456677665
Q ss_pred HcCCCchHHHHHHHHHHhhhccccccCcccch-heeecCCCChHHHHHh-HHHHHHHHHHHHHHHHHHHHHhhh
Q 009002 136 QHNLPPHPFLLALASSANIGSSATPIGNPQNL-VIAVQSKIPFGKFLIG-ILPAMFVGVAVNALILLTMYWKLL 207 (547)
Q Consensus 136 ~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nl-iv~~~~~~~f~~f~~~-~lp~~iv~~~v~~~~~~~~~~~lL 207 (547)
.|++.. --.-..|+..+..+.| ++.|- +..+..|++..||... -+|..+.+++ +....-++..|.+
T Consensus 151 -~Gvsr~--aaaAi~Ast~~i~lsp--~s~~sv~aAe~sgm~i~~~~~~~~lpv~i~~iI-~~ai~hff~qr~~ 218 (451)
T COG3069 151 -LGVSRG--AAAAICASTAAIILSP--TSGDSVLAAQVSGMKIADFAFHYQLPVSIAAII-GMAIAHFFWQRYL 218 (451)
T ss_pred -hcccch--hhHHHhhchHHheeCC--CCcchHHHHHhcCCceEeeeeccCcHHHHHHHH-HHHHHHHHHHHHh
Confidence 455421 1122233344455555 33444 4557788998888654 4565554443 3333334444444
No 95
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=97.72 E-value=0.0016 Score=67.01 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHcCCCch
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALF-TNDTSCVVLTEFVLKIARQHNLPPH 142 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia~~~~~~p~ 142 (547)
++++++.....++..++++|..+.+.+++.+..++++.+....++.+.+++... ||..+..++.|+...++++.|.+|.
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~g~~~~ 241 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKIKSPRSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKMGISPP 241 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccHH
Confidence 566777778899999999999999998888777777777777777777776543 6667888999999999999999998
Q ss_pred HHHHHHHHHHhhhccccccCcccchhe
Q 009002 143 PFLLALASSANIGSSATPIGNPQNLVI 169 (547)
Q Consensus 143 ~~l~~~a~aa~~Gg~~TpiG~p~Nliv 169 (547)
...-.+.-++..|..+.|+++.+-+..
T Consensus 242 ~~a~ai~~~~~~g~~l~P~s~~~i~~~ 268 (303)
T PF03553_consen 242 LLAGAIESGATFGDPLSPWSDTTILSS 268 (303)
T ss_pred HHHHHHHhhhhhcCCCCcchHHHHHHH
Confidence 887778888889999999987655433
No 96
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=97.55 E-value=0.0017 Score=67.38 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=116.1
Q ss_pred HHHHHHhC-CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhH
Q 009002 362 MLVSLLMG-LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGG 440 (547)
Q Consensus 362 ~i~~~~~g-i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~ 440 (547)
++++.-.| +.++....+|.+++.+.-..++. +.+|+.++.+.+......+|+.+|..|++.+.-++...-++..
T Consensus 9 I~~GaR~GGiglG~~gg~G~~il~~~fgl~Pg----~~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~- 83 (364)
T PF03605_consen 9 IFLGARLGGIGLGLAGGLGVAILVFGFGLKPG----SPPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKY- 83 (364)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCc-
Confidence 33444444 77888888887776663223333 3899999999999999999999999999988776654322221
Q ss_pred HHHHH-HHHHHHHHhhc--hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCC
Q 009002 441 IAVLA-AVILVLSNLAS--NVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPH 517 (547)
Q Consensus 441 ~~~l~-~v~~~lS~~is--N~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~ 517 (547)
+..+. +++.++|-+.. |++... .|+ ...+|+..+.-|+++.-..+..+-.|=...|+.+.+--+ .+.++ |
T Consensus 84 It~lAP~vt~~~T~~~GTgh~a~s~--lPV-I~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~-~~~l~---~ 156 (364)
T PF03605_consen 84 ITFLAPLVTYLFTFLAGTGHVAYSL--LPV-IAEVAKENGIRPERPLSISVVASQIAITASPISAATVAM-IAILA---P 156 (364)
T ss_pred EEEehhHHHHHHHHHhcccHHHHHh--hHH-HHHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHH-HHHHc---c
Confidence 11222 23444554443 555444 484 468888889988888666666666777788887644333 33332 3
Q ss_pred CCceeehhhhHhhhhHHHHHHHHHHhhh
Q 009002 518 LGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 518 ~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
.+.+++.|.+.+.+|-|++..+++.+.
T Consensus 157 -~~gv~~~~iL~V~iPat~ig~~~~a~~ 183 (364)
T PF03605_consen 157 -AHGVSLLQILAVTIPATLIGVLVAAFV 183 (364)
T ss_pred -ccCCCHHHHHHhhHHHHHHHHHHHHHH
Confidence 144579999999999999998877653
No 97
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.1 Score=53.14 Aligned_cols=149 Identities=11% Similarity=0.159 Sum_probs=86.7
Q ss_pred HHHHHHHHHHH--ccCC-hHHHH-hcCCh---hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 009002 39 SLLGAMLMVIF--QVIT-PDQAY-AAIDL---PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISA 111 (547)
Q Consensus 39 al~~~~~l~l~--gv~~-~~~a~-~~~~~---~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~ 111 (547)
-+.|+..+.++ |+-. .+..+ +..+| ..+..++-.|.++..+++.|-.+++++.+.... |+...+.+=....
T Consensus 28 if~Gal~lall~Lg~~g~l~~~~~s~~s~st~~lIviv~fim~l~~~me~~G~l~k~~~gll~lf--pk~s~~~iPalIG 105 (388)
T COG1906 28 IFLGALTLALLSLGIRGILLSLYLSVSSWSTWRLIVIVIFIMGLGYVMEQIGYLEKVEEGLLHLF--PKHSLWTIPALIG 105 (388)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHhc--chhHHHHHHHHHc
Confidence 46666555444 3332 22222 23444 455677778999999999999999999875432 2333333322222
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHH
Q 009002 112 ISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVG 191 (547)
Q Consensus 112 ~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~ 191 (547)
++ .--+=+++-.|+.-..+++.|++|.+--.--=+-=.+--..-|+ .|.-++...-.|++..++...++|..++.
T Consensus 106 Lm----PMPgGAliSApmi~p~~~k~~l~pe~kt~iNYwfRHiwe~~WPl-yqaVvi~sav~gvs~~~vs~~~fP~~iia 180 (388)
T COG1906 106 LM----PMPGGALISAPMIEPLAKKFGLNPEKKTFINYWFRHIWELFWPL-YQAVVITSAVLGVSIREVSVKMFPLTIIA 180 (388)
T ss_pred Cc----CCCCcceEeeeeccccchhccCCHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHhcCcHHHHHHHHhHHHHHH
Confidence 22 22223344457777888999999875322211222222223344 44444444556889999999999998876
Q ss_pred HHH
Q 009002 192 VAV 194 (547)
Q Consensus 192 ~~v 194 (547)
+..
T Consensus 181 ~t~ 183 (388)
T COG1906 181 LTI 183 (388)
T ss_pred HHH
Confidence 554
No 98
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=97.36 E-value=0.017 Score=62.77 Aligned_cols=160 Identities=10% Similarity=-0.044 Sum_probs=100.6
Q ss_pred HHhCCcHHHHHHHHHHHHHHhcCCChHHH-------HhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchh
Q 009002 366 LLMGLNMSWTAITAALALVVLDFKDARPS-------LEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHV 438 (547)
Q Consensus 366 ~~~gi~~~~~al~~a~~l~~~~~~~~~~~-------~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 438 (547)
...++++.++.+++++...+....+..|. +.+.=|++.+.++....++.-|++||.++.+++.+.+..+. .
T Consensus 18 ~~~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~--~ 95 (440)
T TIGR00791 18 MKFKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGK--S 95 (440)
T ss_pred HHHcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcc--c
Confidence 34678998988888887777655544333 23344899999999999999999999999999999766432 2
Q ss_pred hHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCC
Q 009002 439 GGIAVLAAVILVLSNLASNVP-TVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPH 517 (547)
Q Consensus 439 ~~~~~l~~v~~~lS~~isN~p-~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~ 517 (547)
...+.+...+.+++.... .+ ...++.| +...+++..+.++...-...+.+.+..-..-|..-.++ .+.+..
T Consensus 96 r~~~a~~~~~~ilgi~~f-~~~~~vil~P-i~~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~~-~~a~~~----- 167 (440)
T TIGR00791 96 RVQWAVVIAGLIVGLALF-FEVGFVLLIP-LVFSIAAEAKISLLKLGIPMVAALSVAHGFLPPHPGPT-AIANEY----- 167 (440)
T ss_pred chHHHHHHHHHHHhhHHH-HHHHHHHHHH-HHHHHHHHhCCChHHHHHHHHHHHHHhceeCCCCccHH-HHHHHh-----
Confidence 223344433444443321 12 2557778 56778888888764322333333344433334443333 333322
Q ss_pred CCceeehhhhHhhhhHHHHHH
Q 009002 518 LGYTLSFWNHLKFGVPSTLIV 538 (547)
Q Consensus 518 ~gy~i~f~df~k~G~p~~li~ 538 (547)
|. +..+|+.+|+|..+..
T Consensus 168 -g~--~~~~~~~~gl~~~i~~ 185 (440)
T TIGR00791 168 -GA--DIGEVLLYGLIVAIPT 185 (440)
T ss_pred -CC--CHHHHHHHHHHHHHHH
Confidence 32 4688999999988886
No 99
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=97.30 E-value=0.44 Score=52.95 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchh----hHHHHHHHHHHHHHHHHc
Q 009002 62 DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTN----DTSCVVLTEFVLKIARQH 137 (547)
Q Consensus 62 ~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN----~~~v~i~~Pi~~~ia~~~ 137 (547)
.++....+++.+.+-+.+++||.+|.+.+.+.+.++++|...+ ++...++.|+.. -+.+++-.|+.+. .
T Consensus 68 ~~~I~~II~~Ai~ly~~~~~sGa~~~I~~~l~~is~D~rvq~l---lI~~~Fg~flEg~aGFGtpvAI~aplLv~----L 140 (530)
T TIGR00795 68 LWPIAWIIIAAIFLYKLSVKSGAFEIIRSSILSISPDRRIQVL---LIGFCFGAFLEGAAGFGTPVAITAAILVG----L 140 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcHHHHHH---HHHHHHHHHHHHhhccCCcHHHHHHHHHH----c
Confidence 5778888999999999999999999999999877766653222 344556666666 3457777888876 5
Q ss_pred CCCchHHHHHHHHHHhhh-ccccccCcccchheeecCCCChHHHH
Q 009002 138 NLPPHPFLLALASSANIG-SSATPIGNPQNLVIAVQSKIPFGKFL 181 (547)
Q Consensus 138 ~~~p~~~l~~~a~aa~~G-g~~TpiG~p~Nliv~~~~~~~f~~f~ 181 (547)
|.+|.+-. .++.-+|.. ...-.+|+|.-.... ..|++..+..
T Consensus 141 Gf~Pl~Aa-~i~Li~ns~~v~fGalG~Pi~~~a~-~~gl~~~~l~ 183 (530)
T TIGR00795 141 GFKPLYAA-GLCLIANTAPVAFGAVGIPIWAGAQ-ATGLSALEIS 183 (530)
T ss_pred CCChHHHH-HHHHHHcCCCccchhhhHHHHHHHH-hcCCCHHHHH
Confidence 88887654 344444421 222335566543222 2355554443
No 100
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=97.19 E-value=0.011 Score=64.99 Aligned_cols=124 Identities=17% Similarity=0.123 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHHHHHcCCCchH
Q 009002 65 ILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSAL-FTNDTSCVVLTEFVLKIARQHNLPPHP 143 (547)
Q Consensus 65 ~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~f-lsN~~~v~i~~Pi~~~ia~~~~~~p~~ 143 (547)
++..++....++..+++.|.++++.+.+.+..++++.+-..+++.+.+...+ -+|..+..++.|+...++++.++++..
T Consensus 325 ~i~ilila~siggi~~~~G~~~~l~~~~~~~i~s~~~l~~~~~l~~~~~~~~tg~~~~si~i~gpia~~i~~~~~~~~~~ 404 (485)
T COG1757 325 AILILILAWSIGGILEDLGTLEYLLSLLQKFIKSKGSLPLIIFLLAILVAFATGTSWGSIIIMGPIAKEIADKLGLHSKR 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcceeeeeeeHHHHHHHHHHhCccHHH
Confidence 6667777789999999999999999999877766666666666666555443 456677889999999999999999887
Q ss_pred HHHHHHHHHhhhccccccCcccchheeecC-CCChHHHHHhHHHHH
Q 009002 144 FLLALASSANIGSSATPIGNPQNLVIAVQS-KIPFGKFLIGILPAM 188 (547)
Q Consensus 144 ~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~-~~~f~~f~~~~lp~~ 188 (547)
..=.+--++.++.-+.|+++..=.+....+ +.+..++.+..+...
T Consensus 405 l~~~l~~gg~~~~~~~Pws~~~i~~s~~~~~~v~~~t~lPya~~~~ 450 (485)
T COG1757 405 LSRALEAGGTFGDHLSPWSDTTILSSTGLGCIVHVTTQLPYAFYAA 450 (485)
T ss_pred HHHHHHhcCeecCCCCCcchhHHHHHhccCCCchhHhhHHHHHHHH
Confidence 554556677788889999766544433333 467778877666554
No 101
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=97.17 E-value=0.008 Score=65.73 Aligned_cols=158 Identities=15% Similarity=0.219 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHc---cCChHHHHhcC----C-----hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-CCchhHH-H
Q 009002 39 SLLGAMLMVIFQ---VITPDQAYAAI----D-----LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKS-RGPKDLL-C 104 (547)
Q Consensus 39 al~~~~~l~l~g---v~~~~~a~~~~----~-----~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~-~~~~~ll-~ 104 (547)
.+..+++.-+.+ ..+++|..+.| . -.++.+..+..++.+.... .|-+-..+.... +.+..+. .
T Consensus 289 fl~~~ii~~~i~~~~~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i---~~tI~~~~~~~l~~~~~~~~~~ 365 (465)
T PF03606_consen 289 FLIIGIIIGLIRHRSGKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKI---IDTIVHLLSNLLSGLPGVIAAI 365 (465)
T ss_pred HHHHHHHHHHHHhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch---HHHHHHHHHHHHhcCCHHHHHH
Confidence 334444444555 67788776654 2 1233344444444444444 444444433322 2233333 3
Q ss_pred HHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHh
Q 009002 105 RICLISAISSALF-TNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIG 183 (547)
Q Consensus 105 ~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~ 183 (547)
.+.++..+++-++ |.++.+..+.|++-.+++..|+++....++.-++++++-+.+|+. ..=+...+-.++++.+|+|.
T Consensus 366 ~m~~~~~~~~fli~SGsg~a~~~mpim~plad~~Gi~~q~~vla~q~g~gl~n~isPts-g~~m~~l~ia~V~~~~w~K~ 444 (465)
T PF03606_consen 366 GMFLIQFLINFLIGSGSGQAAAFMPIMPPLADLLGITRQTAVLAFQFGDGLGNSISPTS-GVLMAVLGIAKVSYGKWVKR 444 (465)
T ss_pred HHHHHHHHHeeecCCchHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhccchH-HHHHHHhhhcCCCHHHHHHH
Confidence 4444455555444 556778899999999999999999999999999999999887763 22233346788999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009002 184 ILPAMFVGVAVNALILL 200 (547)
Q Consensus 184 ~lp~~iv~~~v~~~~~~ 200 (547)
..|+.++.++++.++++
T Consensus 445 ~~~~~~~~~v~~~v~l~ 461 (465)
T PF03606_consen 445 TWPPMLIWFVLSIVFLI 461 (465)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888777665443
No 102
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=97.07 E-value=0.014 Score=60.33 Aligned_cols=190 Identities=12% Similarity=0.205 Sum_probs=119.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHH-hhcCCCc---cchHHHHHHHHHHHHHHHccCCh---H-------HHHhcCCh---hH
Q 009002 3 MASTVKVVLGSIAFAIFWVMAV-FPAVPFL---PIGRTAGSLLGAMLMVIFQVITP---D-------QAYAAIDL---PI 65 (547)
Q Consensus 3 ~~~~~k~~~a~~~~~~~~~~~~-~~~~~~~---pi~~~~~al~~~~~l~l~gv~~~---~-------~a~~~~~~---~~ 65 (547)
++.+....+|++=+.=..++.+ +.. +.+ ..+...+.+++...-.+.-.+++ + +.+++... ++
T Consensus 234 ~~~~~p~~YAilPl~PlI~~lig~~~-~~l~~ikl~i~t~mlI~l~i~m~vefirk~n~k~~~~~l~~ff~GMg~~fanV 312 (451)
T COG3069 234 IDTVVPAFYAILPLTPLIGVLIGFDG-KGLPQIKLHIITIMLISLLIAMLVEFLRKFNLKEVMDDLEAFFDGMGDAFANV 312 (451)
T ss_pred hccCCchhhhhhhhhhHHHHHHhhcc-ccchhhhhhhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667777766653333333 332 222 24444445566544333333333 2 33444443 67
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHcCCCchHH
Q 009002 66 LGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALF-TNDTSCVVLTEFVLKIARQHNLPPHPF 144 (547)
Q Consensus 66 i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia~~~~~~p~~~ 144 (547)
+.++.+..+.+.+++.+|..|.+-+.......+...+.+...+.+++..-.. |.++...-|.-.+-.+|.+.|++|.-+
T Consensus 313 V~liVAa~vFA~GL~tiGaIdalI~~a~~~g~g~~~vmli~~l~~~L~aIvtGSGnApf~AF~~lip~~Aa~lgi~~v~l 392 (451)
T COG3069 313 VMLIVAAGVFAQGLKTIGAIDALISGATSFGSGGIGLMLILVLLTFLAAIVTGSGNAPFIAFVELIPKLAAGLGINPVYL 392 (451)
T ss_pred HHHHHhhHHHHHHhhHhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCchhhhHHhhcchhhhhcCCChHHH
Confidence 7888888999999999999999887655444444444444444333332222 334444555566668899999999999
Q ss_pred HHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHH
Q 009002 145 LLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAV 194 (547)
Q Consensus 145 l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v 194 (547)
.+|..+++++|-.+.|+... -..+.+-.+.+-+|-.|-..|+.+++++.
T Consensus 393 ~mpm~~As~igRt~SPisgV-vvavaG~a~vSPfe~vKRts~pm~~~lv~ 441 (451)
T COG3069 393 IMPMLQASALGRTLSPVSGV-VVAVAGMAKVSPFEVVKRTSVPMLVGLVT 441 (451)
T ss_pred hhhHHHHHhhccccccccce-eeeeccccccChhheeeccCcchhhHHHH
Confidence 99999999999999998543 22344556788889998877776666554
No 103
>PRK11588 hypothetical protein; Provisional
Probab=96.91 E-value=0.088 Score=57.60 Aligned_cols=191 Identities=9% Similarity=0.085 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC--CccchHHHHHHHHHHHHHHH------ccCChHHHHhcCChhHHHHHHHH------
Q 009002 7 VKVVLGSIAFAIFWVMAVFPAVP--FLPIGRTAGSLLGAMLMVIF------QVITPDQAYAAIDLPILGLLFGT------ 72 (547)
Q Consensus 7 ~k~~~a~~~~~~~~~~~~~~~~~--~~pi~~~~~al~~~~~l~l~------gv~~~~~a~~~~~~~~i~~l~~~------ 72 (547)
.|+.+.+.+|++.++.++++..+ +--.+.+..-+..+++.-+. |-.+++|..+.+-...=-++.+.
T Consensus 284 ~r~klvL~~f~~~~~~~i~Gv~~~gW~~~Eia~~Fl~~giv~G~i~~~~~~~g~~~~~i~~~f~~Ga~~m~~~aliig~A 363 (506)
T PRK11588 284 FGDWLVLLVLTAVMVWVIWGVVVNAWFIPEIASQFFTMGLVIGLIGVVFRLNGMTVNTMASSFTEGARMMLAPALLVGFA 363 (506)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666665322 11111111111112222222 45588888777643221111111
Q ss_pred HHHHHHH-----HHhcHHHHHHHHHHhhcCC-c-hhHHHHHHHHHHHHhhhchhh-HHHHHHHHHHHHHHHHcCCCchHH
Q 009002 73 MVVSVYL-----ESADMFKYLGRMLSWKSRG-P-KDLLCRICLISAISSALFTND-TSCVVLTEFVLKIARQHNLPPHPF 144 (547)
Q Consensus 73 ~il~~~l-----~~sG~~~~ia~~i~~~~~~-~-~~ll~~i~~~~~~lS~flsN~-~~v~i~~Pi~~~ia~~~~~~p~~~ 144 (547)
=.+...+ ++-...|-+-..+....++ | ......++++..++.-|+... +-+++..||...+++..|++|...
T Consensus 364 ~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp~~~~ai~m~i~~~~lNffIpSgSGqAaitmPIm~Plad~lGisrq~a 443 (506)
T PRK11588 364 KGILLLLGGGEPGDPSVLNTILNSAGGAISGLPDAVSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLADLVGVNRQVA 443 (506)
T ss_pred HHHHHHhhccCccccchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHeEecChHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 2233345 3333666666555443333 4 445556677778888877655 557799999999999999999988
Q ss_pred HHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHHHHHH
Q 009002 145 LLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAVNALI 198 (547)
Q Consensus 145 l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v~~~~ 198 (547)
.++.-++-...-..||.. +.-+......+++|.+|+|...|+.++.++++.++
T Consensus 444 vlAfq~GDg~tNlI~Pts-~~lm~~Laia~Ipy~kW~Kf~~pl~~i~~v~~~v~ 496 (506)
T PRK11588 444 VLAFQLGDGFTNIIYPTS-ASLMATLGVCRVDFGNWLKFIWRFLLLLFIMSSVV 496 (506)
T ss_pred HHHHHHHhHHHHHhhhhH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877766665531 11122236678999999999999887766655543
No 104
>COG2056 Predicted permease [General function prediction only]
Probab=96.82 E-value=0.054 Score=55.88 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCC--hhHHHHHHHHHHHHH----HHH
Q 009002 7 VKVVLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAID--LPILGLLFGTMVVSV----YLE 80 (547)
Q Consensus 7 ~k~~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~--~~~i~~l~~~~il~~----~l~ 80 (547)
+|.+.++....+.+..=.....+.+|++ ++.|.+++.+.|+++++|.=+-++ .....+++-.|+.++ .++
T Consensus 240 ~~~~~alvaiv~af~vQl~~~~~smilg----al~gliv~~~~gv~~~ke~d~~~~~G~kmMa~IgFVMl~AaGfa~Vi~ 315 (444)
T COG2056 240 YKLALALVAIVVAFAVQLLTFTDSMILG----ALAGLIVFFLSGVIKWKETDDVFTEGVKMMAFIGFVMLVAAGFAEVIN 315 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHH----HHHHHHHHHHhcceehhhhHHHHHhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 6666666555444443332123445554 789999999999999999766554 344455555566554 468
Q ss_pred HhcHHHHHHHHHHhhcCCchhHHHHHHHHHH------HHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh
Q 009002 81 SADMFKYLGRMLSWKSRGPKDLLCRICLISA------ISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANI 154 (547)
Q Consensus 81 ~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~------~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~ 154 (547)
+||-.+.+-+......++.+.+-..++++.. +-|+|-+--..+.+..| +|-+.|.+|......+..|+-+
T Consensus 316 ~TG~V~~LV~s~~~~~g~sK~l~a~lMlvvGLlITMGIGsSF~TIPIIA~iyVP----Lc~~lGFSp~ati~liG~AaAL 391 (444)
T COG2056 316 ATGAVEELVESSSSIIGQSKLLAALLMLVVGLLITMGIGSSFGTIPIIAAIYVP----LCLKLGFSPLATIALIGTAAAL 391 (444)
T ss_pred hccCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccccchHHHHHHHHh----HHHHhCCCHHHHHHHHHHHHHh
Confidence 8999999988776555444443333333332 33566554444555554 5778999999988888999999
Q ss_pred hccccccCcccc-----hheee-cCCCC---hHHHHHhHHHHHHHHHHHH
Q 009002 155 GSSATPIGNPQN-----LVIAV-QSKIP---FGKFLIGILPAMFVGVAVN 195 (547)
Q Consensus 155 Gg~~TpiG~p~N-----liv~~-~~~~~---f~~f~~~~lp~~iv~~~v~ 195 (547)
|-.-+|-.++|= +=..+ +.|+- .-+|..+-+|+.+.|.+.+
T Consensus 392 GDAGSPASDSTLGPTsGLNaDGQHdHIwDTcVPTFihYNiPLlifG~IaA 441 (444)
T COG2056 392 GDAGSPASDSTLGPTSGLNADGQHDHIWDTCVPTFIHYNIPLLIFGWIAA 441 (444)
T ss_pred cCCCCCcccCCCCCccCCCCCCCccchhhccccceeecCchHHHHHHHHH
Confidence 988888765541 11111 12220 1245555678777776643
No 105
>PRK10420 L-lactate permease; Provisional
Probab=96.73 E-value=1.4 Score=49.19 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=77.3
Q ss_pred cCChHHHHh----cCC---hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhh---
Q 009002 51 VITPDQAYA----AID---LPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTND--- 120 (547)
Q Consensus 51 v~~~~~a~~----~~~---~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~--- 120 (547)
-.+++++.. ++- |++...+++.+.+-+-+++||.+|.+.+.+.+.++++|...+ ++...+.+|+...
T Consensus 59 ~mp~~~~~~a~~~G~~~~~~pI~~II~~Ai~ly~~~~~tGa~~~I~~~l~~is~D~Rvq~L---lI~~~Fg~FlEg~AGF 135 (551)
T PRK10420 59 KMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQML---IVGFCFGAFLEGAAGF 135 (551)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCchhHHHH---HHHHHHHHHHHHhccC
Confidence 355666544 322 678788899999999999999999999998877766653222 2444556666665
Q ss_pred -HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh-hccccccCcccchheeecCCCChHHHH
Q 009002 121 -TSCVVLTEFVLKIARQHNLPPHPFLLALASSANI-GSSATPIGNPQNLVIAVQSKIPFGKFL 181 (547)
Q Consensus 121 -~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~-Gg~~TpiG~p~Nliv~~~~~~~f~~f~ 181 (547)
+.+++-.|+.++ .|.+|.+-. .++.-+|. ....-.+|.|..... +..|++..++.
T Consensus 136 GtpvAI~aplLv~----LGF~Pl~Aa-~i~Li~ns~~v~fGavG~Pi~~~a-~~~gl~~~~l~ 192 (551)
T PRK10420 136 GAPVAITAALLVG----LGFKPLYAA-GLCLIVNTAPVAFGAMGIPILVAG-QVTGIDSFEIG 192 (551)
T ss_pred CCcHHHHHHHHHH----cCCChHHHH-HHHHHHcCCccccccccchhhhhh-hhcCCCHHHHH
Confidence 346677787775 789887654 34444442 233334566665433 23456555544
No 106
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=96.68 E-value=0.13 Score=55.00 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=96.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCChHHHH-----hhcChhHHHHHHHHHHHHHHHHHh-CHHHHHHHHhhhhhhcchhhHHH
Q 009002 369 GLNMSWTAITAALALVVLDFKDARPSL-----EKVSYSLLIFFCGMFITVDGFNKT-GIPSALWEFMEPYAEIDHVGGIA 442 (547)
Q Consensus 369 gi~~~~~al~~a~~l~~~~~~~~~~~~-----~~idw~~ll~f~glf~l~~al~~t-G~~~~ia~~l~~~~~~~~~~~~~ 442 (547)
.+|+.++.+.+++++.+....+.+|.. ..-+|+.+-+..++..+.+-++++ |.+|.+++.+.+..+- ....+
T Consensus 20 K~~~~~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~g~--~~~~~ 97 (387)
T TIGR00529 20 KVNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIFSK--NSDSF 97 (387)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCc--ccHHH
Confidence 688888888888887776667776665 346799999999999999999999 9999999999876532 22111
Q ss_pred HHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCce
Q 009002 443 VLAAVILVLSNLASNVPTVL-LLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYT 521 (547)
Q Consensus 443 ~l~~v~~~lS~~isN~p~~~-ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~ 521 (547)
... ++..+ .++... ++.| +....+++.+.++...-....++-...=..-|. ++.=+.+.+.. |
T Consensus 98 ap~-liG~l-----Pv~~g~vilaP-lv~~la~~~~~s~~~~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l------~-- 161 (387)
T TIGR00529 98 VPA-LIGLM-----PMPGGALFSAP-MVKNSLKEERINPEKLTVKNYWFRHTWEFFWPI-YPAVVLVSALS------G-- 161 (387)
T ss_pred HHH-HHHHh-----hHHHHHHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHh------C--
Confidence 221 22222 234444 4678 567777777766543322222222222222222 22323333322 2
Q ss_pred eehhhhHhhhhHHHHHHHHHHhhh
Q 009002 522 LSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 522 i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
.+..++..+|+|.++...+++.+.
T Consensus 162 ~~lg~~il~gl~i~i~~~i~G~~~ 185 (387)
T TIGR00529 162 IHPGKVSLTLFPVFAIAFFLGWFF 185 (387)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667777777777776666543
No 107
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.65 E-value=0.75 Score=47.43 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=83.5
Q ss_pred cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 009002 398 VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISA 477 (547)
Q Consensus 398 idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~ 477 (547)
+.--+++.+.|--..+-.+.-.|...|+-+++.++ +.++.+-+.+...+..++.-|++=.-.+-+.+|+. .-+++..+
T Consensus 293 ~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~l-pgg~igFli~~~~~iF~LgffldffEiafIivPll-aPva~~lg 370 (447)
T COG4664 293 LTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNL-PGGEIGFLIVSNILIFFLGFFLDFFEIAFIIVPLL-APVADKLG 370 (447)
T ss_pred HHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcC-CCCceeeehHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHcC
Confidence 33344555666666666667778888888888654 23333333334456677777888888888888954 46677788
Q ss_pred CCchHHHHHHHHHHHh-hcChh-hhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 478 ADEKKAWLILAWVSTV-AGNLS-LVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 478 ~~~~~~~~~l~~~~~~-gg~~T-piGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
.|+ .|+-...+.+. .+|++ |.|-. +. .+|.-.|. +++-.|-.+=.+|..++.+++-..
T Consensus 371 IDl--iwfGVll~~NlQtSFl~PPfgfs--lf---YLrgVAp~--~VTt~qIy~G~vPfiliqvl~~~~ 430 (447)
T COG4664 371 IDL--IWFGVLLGVNLQTSFLHPPFGFS--LF---YLRGVAPP--SVTTGQIYRGAVPFILIQVLVVIL 430 (447)
T ss_pred CcH--HHHHHHHHHhhhhhccCCCchhh--HH---HhccCCCC--CcchhhhhhccccHHHHHHHHHHH
Confidence 874 66766666654 45676 45532 22 22322233 345777777778888877665443
No 108
>PRK10472 low affinity gluconate transporter; Provisional
Probab=96.37 E-value=0.42 Score=51.87 Aligned_cols=162 Identities=12% Similarity=-0.017 Sum_probs=94.0
Q ss_pred HHhCCcHHHHHHHHHHHHHHhcCCChHHHHhhc----C--h-hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchh
Q 009002 366 LLMGLNMSWTAITAALALVVLDFKDARPSLEKV----S--Y-SLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHV 438 (547)
Q Consensus 366 ~~~gi~~~~~al~~a~~l~~~~~~~~~~~~~~i----d--w-~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 438 (547)
...++++.++.+++++++.+....+.++..+.+ . + .+...+.-...++.-+|+||.++.+++.+.+..+. .
T Consensus 22 ~k~kl~~fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG~--k 99 (445)
T PRK10472 22 MKARMHAFVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGH--S 99 (445)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCc--c
Confidence 345799999999899888887766665543332 1 1 22334444555788999999999999999876432 2
Q ss_pred hHHHHHHHHHHHHH-HhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc-ChhhhhhhhhHHHHhccccCC
Q 009002 439 GGIAVLAAVILVLS-NLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAG-NLSLVGSAANLIVCEQAHRAP 516 (547)
Q Consensus 439 ~~~~~l~~v~~~lS-~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg-~~TpiGs~aNliv~~~~~~~~ 516 (547)
...+.+.....+++ .+.-.++ -.++.| ++..+++..+.+.-..-..++.+....- +.-| .++.+...
T Consensus 100 r~~~A~~l~g~iv~iPvF~dv~-fvil~P-l~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP---~Pgp~a~a------ 168 (445)
T PRK10472 100 RAHYAIGLAGLICALPLFFEVA-IVLLIS-VAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP---GPAPMLLA------ 168 (445)
T ss_pred cHHHHHHHHHHHHhhHHHHhhH-HHHhHH-HHHHHHHHHCCChHHHHHHHHHHHHhcccccCC---CcHHHHHH------
Confidence 22333333333333 1222333 456678 6678888878764333333333322222 3333 23333322
Q ss_pred CCCceeehhhhHhhhhHHHHHHHHH
Q 009002 517 HLGYTLSFWNHLKFGVPSTLIVTAI 541 (547)
Q Consensus 517 ~~gy~i~f~df~k~G~p~~li~~iv 541 (547)
+.+..+-...+-+|+...+...++
T Consensus 169 -~~l~adlG~~il~Glivaip~~~i 192 (445)
T PRK10472 169 -SQMNADFGWMILIGLCAAIPGMII 192 (445)
T ss_pred -HHhCCCHHHHHHHHHHHHHHHHHH
Confidence 233334677888888887777655
No 109
>PRK09695 glycolate transporter; Provisional
Probab=96.35 E-value=2.4 Score=47.44 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHhhc
Q 009002 400 YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLA--SNVPTVLLLGGRVAASAAAISA 477 (547)
Q Consensus 400 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~i--sN~p~~~ll~P~ia~~~a~~~~ 477 (547)
|...+.....+.++.-+..+|..+.+++.+.. .+ . ....+.-+..++..|+ ||+..-+++.+ +....|++.|
T Consensus 414 ~~~~lti~~~vala~vm~~SGm~~~La~~~a~-~G--~--~yp~~aP~iG~lG~FvTGS~TsSN~LF~~-lQ~~tA~~lG 487 (560)
T PRK09695 414 KWPILSIGMVLAFAFVTNYSGMSTTLALVLAG-TG--V--MFPFFSPFLGWLGVFLTGSDTSSNALFGS-LQSTTAQQIN 487 (560)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-hC--c--cHHHHHHHHhhhhcccccccHHHHHHHHH-HHHHHHHHcC
Confidence 55688888899999999999999999999852 21 1 1123334556666777 69998888888 7888999988
Q ss_pred CCchHHHHHHHHHHHhhcChhhhhhhhhHHHHh
Q 009002 478 ADEKKAWLILAWVSTVAGNLSLVGSAANLIVCE 510 (547)
Q Consensus 478 ~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~ 510 (547)
.++. |+.. .-+.||..--+-|+.|+.+..
T Consensus 488 l~~~--li~A--aq~~Gg~~GkmIspq~I~~a~ 516 (560)
T PRK09695 488 VSDT--LLVA--ANTSGGVTGKMISPQSIAVAC 516 (560)
T ss_pred CCHH--HHHH--HHHHhhHHhhccCHHHHHHHH
Confidence 8753 2322 233444333333567776433
No 110
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=96.33 E-value=0.064 Score=55.78 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHccCChHHHHhcCC------hhHHHHHHHHHHHHHHHHHhcH
Q 009002 11 LGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAID------LPILGLLFGTMVVSVYLESADM 84 (547)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~------~~~i~~l~~~~il~~~l~~sG~ 84 (547)
+-++....+..+++++ .+|.. ..-++|..+-+..+--+.||-.+.+. .....++++.=+....++.||.
T Consensus 235 ~N~lLtl~lm~~Lv~g---i~p~~--~lFmig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AAGif~Gil~gtgM 309 (433)
T COG2851 235 FNLLLTLALMGLLVSG---IFPPG--VLFMIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAAGIFLGILSGTGM 309 (433)
T ss_pred HHHHHHHHHHHHHHhc---ccchh--HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHHHHHhhhhCCCch
Confidence 3334444444444443 44554 55567777777778777777655432 2333455555666788999999
Q ss_pred HHHHHHHHHhhcC---CchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhc---cc
Q 009002 85 FKYLGRMLSWKSR---GPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGS---SA 158 (547)
Q Consensus 85 ~~~ia~~i~~~~~---~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg---~~ 158 (547)
.|.+|+.+.+... +| .+=..+.+++.-++-|+|||+-=.=+.|++-+.+.+.|++|.. .+.++.+|. +.
T Consensus 310 vdama~si~~vIP~~lgp-yl~~ivgl~svP~tf~~snDAyYfGvlPIv~e~as~yGv~pv~----~A~AsiiGq~vh~l 384 (433)
T COG2851 310 VDAMAKSIVSVIPDALGP-YLPLIVGLLSVPFTFFMSNDAYYFGVLPIVAEAASAYGVEPVE----IARASIIGQPVHFL 384 (433)
T ss_pred HHHHHHHHHHhCcHhhcc-hHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHcCCCHHH----HHHHHHhCCcceee
Confidence 9999998876543 23 2223344555567779999999999999999999999999954 455555554 34
Q ss_pred cccCcccchheeecCCCChHHHHHhH
Q 009002 159 TPIGNPQNLVIAVQSKIPFGKFLIGI 184 (547)
Q Consensus 159 TpiG~p~Nliv~~~~~~~f~~f~~~~ 184 (547)
+|. .|.-.+..+-.+.+++|+-|..
T Consensus 385 SPl-vPat~LlvgLa~v~~gdh~k~a 409 (433)
T COG2851 385 SPL-VPATYLLVGLAKVDMGDHQKFA 409 (433)
T ss_pred ccc-hHHHHHHHHhhcCChhHHHHHH
Confidence 444 2444444566678888776643
No 111
>PRK10034 fructuronate transporter; Provisional
Probab=96.06 E-value=0.6 Score=50.71 Aligned_cols=161 Identities=14% Similarity=0.036 Sum_probs=94.0
Q ss_pred HHhCCcHHHHHHHHHHHHHHhcCCChHHH-------HhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchh
Q 009002 366 LLMGLNMSWTAITAALALVVLDFKDARPS-------LEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHV 438 (547)
Q Consensus 366 ~~~gi~~~~~al~~a~~l~~~~~~~~~~~-------~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 438 (547)
...++++.++.+++++.+.+....+..|. +.+.=++..+.+...-.++.-+|+||.++.+++.+.+..+- .
T Consensus 21 ~k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~--k 98 (447)
T PRK10034 21 LKFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGL--R 98 (447)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCc--c
Confidence 34579999998888888877766554443 33455777777777778999999999999999999876542 2
Q ss_pred hHHHHHHHHHHHH--HHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCC
Q 009002 439 GGIAVLAAVILVL--SNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAP 516 (547)
Q Consensus 439 ~~~~~l~~v~~~l--S~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~ 516 (547)
...+.+.+.+.++ +-| -.+. ..++.| ++.+.+++.+.+..+.-+.++.+...+.+.-|= ++.-+-+.+
T Consensus 99 r~~~a~~l~g~llGi~vF-~dv~-~v~laP-i~~~lak~~~~s~~~~~~~l~~gl~~~h~lvPP-~Pgpla~a~------ 168 (447)
T PRK10034 99 YVQLSVIIIGLIFGLAMF-YEVA-FIMLAP-LVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPP-QPGPVALVN------ 168 (447)
T ss_pred chHHHHHHHHHHHhhHHH-HHhH-HHhhHH-HHHHHHHHhCcCHHHHHHHHHHHHHHhhcccCC-CCcHHHHHH------
Confidence 2222322222222 112 1222 234568 567778777776544333334444444333321 222233333
Q ss_pred CCCceeehhhhHhhhhHHHHHHHH
Q 009002 517 HLGYTLSFWNHLKFGVPSTLIVTA 540 (547)
Q Consensus 517 ~~gy~i~f~df~k~G~p~~li~~i 540 (547)
.+..+-.+.+-+|++..+...+
T Consensus 169 --~l~a~lG~~il~Gl~v~ip~~~ 190 (447)
T PRK10034 169 --AYGADMGMVYIYGVLVTIPSVI 190 (447)
T ss_pred --HhCCcHHHHHHHhhHHHHHHHH
Confidence 3333456777788666666533
No 112
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=96.01 E-value=0.2 Score=53.39 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=89.4
Q ss_pred HHHHHHHccCChHHH---H-hcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHhhhc
Q 009002 43 AMLMVIFQVITPDQA---Y-AAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGP-KDLLCRICLISAISSALF 117 (547)
Q Consensus 43 ~~~l~l~gv~~~~~a---~-~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~-~~ll~~i~~~~~~lS~fl 117 (547)
.....+.+..+.+|. + ++++++.++.+.+.|+.-+.++.||+.|.+++.+.+. +-| ..++..+-++.+++|..
T Consensus 230 ~l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~~-~ip~~li~~lipFivG~~TGi- 307 (385)
T PF04165_consen 230 LLAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPEFLSSL-GIPPFLIIALIPFIVGLITGI- 307 (385)
T ss_pred HHHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhH-
Confidence 344445566666643 3 4589999999999999999999999999999887643 223 23333333333333321
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh-hccccccCcccch---heeecCCCChHHHHHhHHHHHHHHHH
Q 009002 118 TNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANI-GSSATPIGNPQNL---VIAVQSKIPFGKFLIGILPAMFVGVA 193 (547)
Q Consensus 118 sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~-Gg~~TpiG~p~Nl---iv~~~~~~~f~~f~~~~lp~~iv~~~ 193 (547)
+.+.+.+-.|++.+.... .++ ..+++.+.. |-+. +|..+ +-.++.+-++.+-.+..+|+.++..+
T Consensus 308 -~~a~vgi~fPll~~l~~~-----~~~-~~la~~~g~~Gvml----SP~HlCLvlT~eYFk~~~~~v~k~l~~p~~i~~~ 376 (385)
T PF04165_consen 308 -TQAFVGIAFPLLAPLIGG-----LPY-LVLAYASGFAGVML----SPVHLCLVLTAEYFKADLGKVYKKLLPPALIFLA 376 (385)
T ss_pred -HHHHHHHHHHHHHHhccc-----chH-HHHHHHHHHHHHhh----chHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 345567888998887532 233 345555543 3344 45554 33477888999888877776655544
Q ss_pred HHH
Q 009002 194 VNA 196 (547)
Q Consensus 194 v~~ 196 (547)
++.
T Consensus 377 ~~~ 379 (385)
T PF04165_consen 377 AGL 379 (385)
T ss_pred HHH
Confidence 443
No 113
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=95.89 E-value=0.63 Score=50.48 Aligned_cols=162 Identities=13% Similarity=0.011 Sum_probs=94.2
Q ss_pred hCCcHHHHHHHHHHHHHHhcCCChHHHHhhcC-------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhH
Q 009002 368 MGLNMSWTAITAALALVVLDFKDARPSLEKVS-------YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGG 440 (547)
Q Consensus 368 ~gi~~~~~al~~a~~l~~~~~~~~~~~~~~id-------w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~ 440 (547)
..+++..+-+++++..-+....+.+|..+.+. -++-+.++-.-+++.-+++||.+|.+++.+.+..+.. ..
T Consensus 20 ~klhpF~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k--~~ 97 (441)
T PF02447_consen 20 FKLHPFLALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEK--RA 97 (441)
T ss_pred HhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCC--cc
Confidence 46888888888888777766666665543322 2333444444557888999999999999997765432 22
Q ss_pred HHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCC
Q 009002 441 IAVLAAVILVLS--NLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHL 518 (547)
Q Consensus 441 ~~~l~~v~~~lS--~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~ 518 (547)
.+.+.+...+++ -|.+ ++ -.++.| ++..+++..+.+.-.....++.+...+-...|= + ++.+... +
T Consensus 98 ~~A~~i~g~iv~IPvF~d-v~-~viL~P-l~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPP-t-Pgpla~a-------~ 165 (441)
T PF02447_consen 98 PLALAITGFIVGIPVFFD-VG-FVILAP-LAFSLARKTGKSLLYLALPLAAGLSVTHALVPP-T-PGPLAAA-------G 165 (441)
T ss_pred cHHHHHHHHHhhhHHHHH-HH-HHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC-C-CcHHHHH-------H
Confidence 233333333333 3434 44 567789 567888887876433222233332232223221 2 3333322 2
Q ss_pred CceeehhhhHhhhhHHHHHHHHHHh
Q 009002 519 GYTLSFWNHLKFGVPSTLIVTAIGL 543 (547)
Q Consensus 519 gy~i~f~df~k~G~p~~li~~iv~~ 543 (547)
.+..+...++-+|++..+...+++-
T Consensus 166 ~lg~dlG~~il~Gl~vaip~~~iag 190 (441)
T PF02447_consen 166 ALGADLGLVILYGLIVAIPAMLIAG 190 (441)
T ss_pred HhCCChhHHHHHhHHHHHHHHHHHH
Confidence 3334567788899888888776643
No 114
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=95.84 E-value=0.2 Score=55.48 Aligned_cols=133 Identities=19% Similarity=0.260 Sum_probs=94.1
Q ss_pred cCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHH-HHHHHHHHHhhhchhhHHH
Q 009002 51 VITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLC-RICLISAISSALFTNDTSC 123 (547)
Q Consensus 51 v~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~-~i~~~~~~lS~flsN~~~v 123 (547)
-.+.+|..+.+ -+++.+.+...+.+++.+..||...-+|+.+.+ .+.-+.++. .+..+.+++|. |||..-
T Consensus 368 ~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~yp~~aP~lG~lG~FiTG--S~T~SN 444 (522)
T PF02652_consen 368 RMSPSQVREALKKTLKQLWPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAAYPFFAPFLGWLGSFITG--SNTSSN 444 (522)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCccHHHHHHHHHHHhccccc--chHHHH
Confidence 45666655443 267889999999999999999999999999887 554444432 44445554443 688888
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheee-cCCCC--hHHHHHhHHHHHHH
Q 009002 124 VVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAV-QSKIP--FGKFLIGILPAMFV 190 (547)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~-~~~~~--f~~f~~~~lp~~iv 190 (547)
++|.++=.+.|++.|.||..+.=.-..++..|.+. +|+|+.+.. ..|.. =.+-+|..+|.++.
T Consensus 445 ~lF~~lQ~~~A~~lgl~~~l~~Aaq~~Gg~~g~mI----sp~~i~~a~a~~g~~g~Eg~ilr~t~~~~l~ 510 (522)
T PF02652_consen 445 ALFGPLQVTTAQQLGLPPLLIAAAQNVGGAMGNMI----SPQNIVAAAAAVGLSGKEGEILRKTLPPSLI 510 (522)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 89999999999999999976665566666665554 789997762 22222 24667766766544
No 115
>PRK09821 putative transporter; Provisional
Probab=95.79 E-value=1.1 Score=48.74 Aligned_cols=163 Identities=13% Similarity=-0.002 Sum_probs=96.7
Q ss_pred HhCCcHHHHHHHHHHHHHHhcCCChHHHHh-------hcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhh
Q 009002 367 LMGLNMSWTAITAALALVVLDFKDARPSLE-------KVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVG 439 (547)
Q Consensus 367 ~~gi~~~~~al~~a~~l~~~~~~~~~~~~~-------~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 439 (547)
..++++.++.+++++...+....+.++..+ +.=-+..++++..-.++.-+++||.+|.+++.+.+..+.+ .
T Consensus 23 k~kl~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k--~ 100 (454)
T PRK09821 23 KAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDK--R 100 (454)
T ss_pred HhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC--c
Confidence 356899888888888877776666555432 2223334444444457788899999999999997765432 2
Q ss_pred HHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH-hhcChhhhhhhhhHHHHhccccCC
Q 009002 440 GIAVLAAVILVLS--NLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVST-VAGNLSLVGSAANLIVCEQAHRAP 516 (547)
Q Consensus 440 ~~~~l~~v~~~lS--~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~-~gg~~TpiGs~aNliv~~~~~~~~ 516 (547)
..+.+...+.+++ -|.+ .+-.++.| +....+++.+.+.......++.+.+ .-....|-..+.|.. +.+
T Consensus 101 ~~~ai~i~~~ilgIpvF~d--v~fvil~P-l~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~a--~~L---- 171 (454)
T PRK09821 101 TIAALTLAAFILGIPVFFD--VGFIILAP-IIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAAA--GLL---- 171 (454)
T ss_pred hHHHHHHHHHHHhhHHHHH--HHHHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHHH--HHh----
Confidence 2234444444443 3332 33446678 6678888877764332122221112 222345666666652 322
Q ss_pred CCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 517 HLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 517 ~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
|. +-....-+|+...+...+++.+
T Consensus 172 --g~--d~g~~~l~Giivaip~~i~g~~ 195 (454)
T PRK09821 172 --HA--DIGWLTIIGIAISIPVGIVGYF 195 (454)
T ss_pred --CC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3567778888888877776554
No 116
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=95.78 E-value=0.79 Score=49.64 Aligned_cols=159 Identities=9% Similarity=-0.015 Sum_probs=90.3
Q ss_pred HhCCcHHHHHHHHHHHHHHhcCCChHHHHhhc-------ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhh
Q 009002 367 LMGLNMSWTAITAALALVVLDFKDARPSLEKV-------SYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVG 439 (547)
Q Consensus 367 ~~gi~~~~~al~~a~~l~~~~~~~~~~~~~~i-------dw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 439 (547)
..++++..+.+++++.+.+....+..|.++.+ =-+.-+.++..-+++.-+++||.++.+++.+.+..+ ...
T Consensus 19 k~Kl~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G--~kr 96 (438)
T PRK14984 19 RFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFG--KKH 96 (438)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhC--ccc
Confidence 35688888888888888877777666654332 223333444444567899999999999999976643 223
Q ss_pred HHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH--hhcChhhhhhhhhHHHHhccccC
Q 009002 440 GIAVLAAVILVLS--NLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVST--VAGNLSLVGSAANLIVCEQAHRA 515 (547)
Q Consensus 440 ~~~~l~~v~~~lS--~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~--~gg~~TpiGs~aNliv~~~~~~~ 515 (547)
..+.+.+.+.+++ -|. .+. -.++.| ++...+++.+.+- ..+...+.++ ..-... -+++.-+.+.+
T Consensus 97 ~~~a~~l~~~il~ipvF~-dv~-fvil~P-i~~~lak~~~~~~--~~~~~~l~~gl~~th~~v-PP~Pgpla~a~----- 165 (438)
T PRK14984 97 IQWAVVLTGFTVGFALFY-EVG-FVLMLP-LVFTIAASANIPL--LYVGVPMAAALSVTHGFL-PPHPGPTAIAT----- 165 (438)
T ss_pred hHHHHHHHHHHHhhHHHH-HHH-HHHHHH-HHHHHHHHhCcCh--HHHHHHHHHHHHHHHhCC-CCCCcHHHHHH-----
Confidence 3334444344443 221 111 235678 6678888777653 2233332221 111121 23433334433
Q ss_pred CCCCceeehhhhHhhhhHHHHHHHHH
Q 009002 516 PHLGYTLSFWNHLKFGVPSTLIVTAI 541 (547)
Q Consensus 516 ~~~gy~i~f~df~k~G~p~~li~~iv 541 (547)
.+..+-...+-+|+...+...++
T Consensus 166 ---~lgadlG~~il~Glivaip~~~i 188 (438)
T PRK14984 166 ---IFNADMGKTLLYGTILAIPTVIL 188 (438)
T ss_pred ---HhCCCHHHHHHHhHHHHHHHHHH
Confidence 33335677888888777777544
No 117
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=95.33 E-value=5.3 Score=43.29 Aligned_cols=135 Identities=20% Similarity=0.274 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHH-HHHHHHHHcC-CCchHHHHHHH
Q 009002 72 TMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTE-FVLKIARQHN-LPPHPFLLALA 149 (547)
Q Consensus 72 ~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~P-i~~~ia~~~~-~~p~~~l~~~a 149 (547)
+.+.+.++.+|-..+++=+++.+.-++++..+..+.+++.+. +++| =+--++... ++.++|||.+ ++ .|++.+-+
T Consensus 67 ilvtG~~lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~-s~in-WG~gLV~gallArelarr~~~vd-YpllvAaa 143 (453)
T PF02667_consen 67 ILVTGYALASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIA-SWIN-WGFGLVVGALLARELARRVKGVD-YPLLVAAA 143 (453)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHH-HHHH-hhHHHHHHHHHHHHHHHhccCCc-HHHHHHHH
Confidence 346678899999999999999888888888777766655544 3443 333333333 4567888765 43 36666666
Q ss_pred HHHhh-------hccccccCcccchheeecC------CCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009002 150 SSANI-------GSSATPIGNPQNLVIAVQS------KIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHK 211 (547)
Q Consensus 150 ~aa~~-------Gg~~TpiG~p~Nliv~~~~------~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~ 211 (547)
|..-. ||.-..+.||-|.+....+ -+++.|-... |..++..++.++...++.+...|+++
T Consensus 144 Y~g~~vWh~GlSgS~pL~~At~g~~l~~~~~~~~~~~vIP~seTif~--~~nli~~~~~~v~~pli~~~m~P~~~ 216 (453)
T PF02667_consen 144 YSGFVVWHGGLSGSAPLLVATPGHFLEKIIGGLVITGVIPTSETIFS--PYNLIIVVVLLVVLPLINYLMAPKPE 216 (453)
T ss_pred HHHHHHHhccccchhHHHhcCCCCcHHHHhcccccCCccCcchhhcc--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 55432 1222334455554433222 3566655432 22222222222233445566667653
No 118
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=95.16 E-value=0.025 Score=57.53 Aligned_cols=73 Identities=25% Similarity=0.231 Sum_probs=51.5
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHH
Q 009002 112 ISSALFTNDTSCVVLTEFVLKIARQHNLP-PHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFV 190 (547)
Q Consensus 112 ~lS~flsN~~~v~i~~Pi~~~ia~~~~~~-p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv 190 (547)
-.|+.+||.+.++.-+ +.++... -+..+|.+-.+ |||+-| ||-||++.++.-+++++||.+.|+|..++
T Consensus 266 miSAvlDNATLaAAEI------sP~m~~~qi~aiLmgLliS---GGMlIP-GNIPNIIsAgkL~I~skEWar~gvPlGl~ 335 (347)
T PF07854_consen 266 MISAVLDNATLAAAEI------SPEMSEEQIRAILMGLLIS---GGMLIP-GNIPNIISAGKLKITSKEWARLGVPLGLV 335 (347)
T ss_pred HHHHHHhhHHHHHHHh------CcccCHHHHHHHHHHHHHc---CCeecC-CCcchhhccccCccchHHHHHHcccHHHH
Confidence 3688899988776532 2222211 12344444432 788777 99999999999999999999999999877
Q ss_pred HHHH
Q 009002 191 GVAV 194 (547)
Q Consensus 191 ~~~v 194 (547)
.+.+
T Consensus 336 ~m~~ 339 (347)
T PF07854_consen 336 LMVV 339 (347)
T ss_pred HHHH
Confidence 6554
No 119
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=95.07 E-value=2.7 Score=46.31 Aligned_cols=139 Identities=11% Similarity=0.063 Sum_probs=93.7
Q ss_pred CChHHHHhcCCh------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc---C-CchhHHHHHHHHHHHHhhhchhhH
Q 009002 52 ITPDQAYAAIDL------PILGLLFGTMVVSVYLESADMFKYLGRMLSWKS---R-GPKDLLCRICLISAISSALFTNDT 121 (547)
Q Consensus 52 ~~~~~a~~~~~~------~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~---~-~~~~ll~~i~~~~~~lS~flsN~~ 121 (547)
-+.+|..+.+.. ..+++++-.--+...++++++.+.++.+....- + ++...+..+.++++++.-|+....
T Consensus 329 k~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~~~iNlfI~S~S 408 (513)
T TIGR00819 329 RGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASAS 408 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHheeccHH
Confidence 466776665431 222233333345567899999999998775433 2 345566777888888988887665
Q ss_pred H-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccc---hhee---ec--CCCChHHHHHhHHHHHHHHH
Q 009002 122 S-CVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQN---LVIA---VQ--SKIPFGKFLIGILPAMFVGV 192 (547)
Q Consensus 122 ~-v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~N---liv~---~~--~~~~f~~f~~~~lp~~iv~~ 192 (547)
. .+++.|+...++...|++|.....+--++-+. |-+=+|++ -++. ++ .+.++.+.+..++|..+.-+
T Consensus 409 gkwal~aPI~vPm~~~lGisp~~t~~AyriGDs~----tNiItP~~~y~~lil~~~~~y~k~~g~Gtl~s~mlPysi~~l 484 (513)
T TIGR00819 409 AIWAILAPIFVPMFMLAGFAPAFAQAAFRIADSS----TLIIAPMMPFFGLFLAFLMKYKKDAGLGTLISLMLPYPAFFL 484 (513)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhchH----HHhhccCcchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 5 77999999999999999998766555555544 43445666 2222 22 24678999999999987644
Q ss_pred HH
Q 009002 193 AV 194 (547)
Q Consensus 193 ~v 194 (547)
+.
T Consensus 485 ~~ 486 (513)
T TIGR00819 485 IA 486 (513)
T ss_pred HH
Confidence 43
No 120
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=94.99 E-value=7.1 Score=42.91 Aligned_cols=100 Identities=25% Similarity=0.264 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCC
Q 009002 61 IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLP 140 (547)
Q Consensus 61 ~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~ 140 (547)
.+.+-+.++.-+|.=...-|+||+++.+-++..++ .|++++.....+.+++|...++.+ -+++.|+.--+-+..|.+
T Consensus 76 ~~F~PLG~Vlv~mlgvgvAE~sGll~a~~r~~~~~--~p~~~vt~~v~f~Gi~sniasDAg-~Vvl~PL~a~iF~~~GRh 152 (502)
T PF03806_consen 76 TGFPPLGLVLVMMLGVGVAEKSGLLSALMRKLVLK--APPRLVTPAVVFVGIMSNIASDAG-YVVLPPLAAMIFAAVGRH 152 (502)
T ss_pred hcCCcHHHHHHHHHHHHHHHHhchHHHHHHHHhcc--CCcchhhHHHHHHHHHhcccccce-eEeHHhhHHHHHHHcCCC
Confidence 35677777777777777789999999998887543 366677666777888887776544 456679988888999999
Q ss_pred chHHHHHHHHHHhhhccccccCcccchhee
Q 009002 141 PHPFLLALASSANIGSSATPIGNPQNLVIA 170 (547)
Q Consensus 141 p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~ 170 (547)
|. .-+..+|++-.||+ ..|+++.
T Consensus 153 Pl-aGi~~afa~vs~Gf------sAnl~i~ 175 (502)
T PF03806_consen 153 PL-AGIAAAFAGVSGGF------SANLLIG 175 (502)
T ss_pred hH-HHHHHHHHHHhccc------cceeecc
Confidence 84 45688888887664 5666654
No 121
>PRK10420 L-lactate permease; Provisional
Probab=94.96 E-value=0.47 Score=52.93 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=83.0
Q ss_pred cCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHH-HHHHHHHHHhhhchhhHHH
Q 009002 51 VITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLC-RICLISAISSALFTNDTSC 123 (547)
Q Consensus 51 v~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~-~i~~~~~~lS~flsN~~~v 123 (547)
-.+.++..+.+ -+++.+.+...+.++..+..||...-+++.+. ..++-+.++. .+..+.+++|. |||..-
T Consensus 388 ~~~~~~~~~~~~~t~k~~~~~~iti~~~vala~vm~~SGm~~~la~~~A-~~G~~yp~~aP~lG~lG~FvTG--S~TsSN 464 (551)
T PRK10420 388 KMKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALA-HTGHAFTFFSPFLGWLGVFLTG--SDTSSN 464 (551)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HhCccHHHHHHHHHhhhccccc--ccHHHH
Confidence 35666655443 35788899999999999999999999999877 3444444433 44444444433 888889
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee
Q 009002 124 VVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA 170 (547)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~ 170 (547)
++|.++=.+.|++.|+||..+.=.-..++..|.+. +|+|+.+.
T Consensus 465 ~LF~~lQ~~tA~~lgl~~~li~Aaq~~Gg~~GkmI----spq~I~~a 507 (551)
T PRK10420 465 ALFAALQATAAQQIGVSDVLLVAANTTGGVTGKMI----SPQSIAIA 507 (551)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHhhcc----CHHHHHHH
Confidence 99999999999999999876655556666665554 78999776
No 122
>PRK09695 glycolate transporter; Provisional
Probab=94.96 E-value=0.53 Score=52.57 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=82.7
Q ss_pred cCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHH-HHHHHHHHHhhhchhhHHH
Q 009002 51 VITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLC-RICLISAISSALFTNDTSC 123 (547)
Q Consensus 51 v~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~-~i~~~~~~lS~flsN~~~v 123 (547)
-.+.+|..+.+ -+...+.+...+.++..+..+|...-+|+.+. ..++-+.++. .+..+.+++|. |||..-
T Consensus 396 ~~~~~~~~~~l~~t~k~~~~~~lti~~~vala~vm~~SGm~~~La~~~a-~~G~~yp~~aP~iG~lG~FvTG--S~TsSN 472 (560)
T PRK09695 396 GVGIKKGIGVFAETLISLKWPILSIGMVLAFAFVTNYSGMSTTLALVLA-GTGVMFPFFSPFLGWLGVFLTG--SDTSSN 472 (560)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HhCccHHHHHHHHhhhhccccc--ccHHHH
Confidence 45666554433 26678899999999999999999999999985 4444444433 44444554433 788889
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee
Q 009002 124 VVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA 170 (547)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~ 170 (547)
++|.++=.+.|++.|+||..+.=.-..++..|.+. +|+|+.+.
T Consensus 473 ~LF~~lQ~~tA~~lGl~~~li~Aaq~~Gg~~GkmI----spq~I~~a 515 (560)
T PRK09695 473 ALFGSLQSTTAQQINVSDTLLVAANTSGGVTGKMI----SPQSIAVA 515 (560)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHhhcc----CHHHHHHH
Confidence 99999999999999999876655555666665544 79999776
No 123
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=94.82 E-value=0.056 Score=55.94 Aligned_cols=170 Identities=17% Similarity=0.164 Sum_probs=110.0
Q ss_pred HHHHHHHhC-CcHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhh
Q 009002 361 GMLVSLLMG-LNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVG 439 (547)
Q Consensus 361 ~~i~~~~~g-i~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 439 (547)
...+++-.| +.++++.-+|.+++.+.-..++. +.+|++++.+.+......+||.+|..|++-+.-++...-++..
T Consensus 12 ~if~GaR~GGIglG~~GGlGv~il~f~f~~~P~----~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~ 87 (436)
T COG2704 12 ALFLGARLGGIGLGVAGGLGVLILVFIFGLKPG----KPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKY 87 (436)
T ss_pred HHHHhhcccceeeeecccccHHHHhhhhcCCCC----CCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCe
Confidence 334444444 77777777777776665433332 4899999999999999999999999999987766654322221
Q ss_pred HHHHHH-HHHHHHHHhhc--hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCC
Q 009002 440 GIAVLA-AVILVLSNLAS--NVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAP 516 (547)
Q Consensus 440 ~~~~l~-~v~~~lS~~is--N~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~ 516 (547)
+..+. +++..+|-+.. |+.... .| +...+|..+|.-|.++.-..+..+-.+=...||.. |-+-..+.++
T Consensus 88 -iT~lAP~Vty~lT~maGTGh~vySi--lP-VI~eVA~~~gIrPeRPls~avVsSQ~aItASPISA-AVV~~~a~l~--- 159 (436)
T COG2704 88 -ITILAPFVTYTLTILAGTGHVVYSI--LP-VIAEVAKKNGIRPERPLSAAVVSSQIAITASPISA-AVVYMSAVLE--- 159 (436)
T ss_pred -EEEehhHHHHHHHHhhcCCceeeee--hh-HHHHHHHHcCCCCCCcchHHHHHhhhhhhcCchHH-HHHHHHHHHh---
Confidence 11111 23444443332 444443 48 45788988999888886655555556666777764 3333333333
Q ss_pred CCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 517 HLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 517 ~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
|.|+. +.+-+-+-+|-|++...+..+
T Consensus 160 ~~g~~--~l~ll~v~IPaTl~g~~~~~l 185 (436)
T COG2704 160 PLGIS--YLTLLMVTIPSTLLGVLLMAL 185 (436)
T ss_pred hcCcc--hheeeeEEecHHHHHHHHHHH
Confidence 46664 688888899999988876554
No 124
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=94.80 E-value=3.3 Score=45.59 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=95.9
Q ss_pred CChHHHHhcCCh------hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhh---cC-CchhHHHHHHHHHHHHhhhchhhH
Q 009002 52 ITPDQAYAAIDL------PILGLLFGTMVVSVYLESADMFKYLGRMLSWK---SR-GPKDLLCRICLISAISSALFTNDT 121 (547)
Q Consensus 52 ~~~~~a~~~~~~------~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~---~~-~~~~ll~~i~~~~~~lS~flsN~~ 121 (547)
-+.+|..+.+.- ..+++.++.--....++.++....++.+.... .+ ++...+..+.++++++.-|+....
T Consensus 327 ks~~Dv~~~m~~g~~~m~~~ivl~F~~Aqfia~F~~snlG~ilav~gA~~L~~~~l~~~pl~i~~ill~a~iNlfI~SgS 406 (508)
T PRK11339 327 RRQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGS 406 (508)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHccccHH
Confidence 456676655431 12222222223334456788888887765543 22 355666788888999998887765
Q ss_pred H-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhe------eecC--CCChHHHHHhHHHHHHHHH
Q 009002 122 S-CVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVI------AVQS--KIPFGKFLIGILPAMFVGV 192 (547)
Q Consensus 122 ~-v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv------~~~~--~~~f~~f~~~~lp~~iv~~ 192 (547)
+ .+++.|+...+....|++|...-.+-=++-+..-..|| .+-+. .+.+ +.++.++++.++|.++.-+
T Consensus 407 akwai~aPIfVPm~~llGisPe~tq~AyRiGDs~TNiItP----l~~y~~lil~~~~~y~k~~g~Gtlis~mlPysi~~l 482 (508)
T PRK11339 407 AIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAP----VSPFVPLFLGFLQRYKPDAKLGTYYSLVLPYPLIFL 482 (508)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHccchhhhcCC----chHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHH
Confidence 5 77999999999999999998765555555554444444 44333 2333 7899999999999987655
Q ss_pred HHHHHHHHHHHHhhhc
Q 009002 193 AVNALILLTMYWKLLN 208 (547)
Q Consensus 193 ~v~~~~~~~~~~~lLp 208 (547)
+.-...+..++.--+|
T Consensus 483 v~w~~ll~~w~~~glP 498 (508)
T PRK11339 483 VVWLLMLLAWYLVGLP 498 (508)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4433333333333344
No 125
>PRK09921 permease DsdX; Provisional
Probab=94.74 E-value=2.9 Score=45.58 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=87.0
Q ss_pred HhCCcHHHHHHHHHHHHHHhcCCChHHHHhhc----C--h-hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhh
Q 009002 367 LMGLNMSWTAITAALALVVLDFKDARPSLEKV----S--Y-SLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVG 439 (547)
Q Consensus 367 ~~gi~~~~~al~~a~~l~~~~~~~~~~~~~~i----d--w-~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~ 439 (547)
...+++.++-+.+++.+.+....+.+|..+.+ - + .+...++..-+++.-||+||.++.+++.+.+... ..
T Consensus 24 k~k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~~~---~~ 100 (445)
T PRK09921 24 KFKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRW---LS 100 (445)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhh---hh
Confidence 35688888888888877777666554443221 1 1 2334455555678899999999999999865411 11
Q ss_pred HHHHHHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCC
Q 009002 440 GIAVLAAVILV--LSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPH 517 (547)
Q Consensus 440 ~~~~l~~v~~~--lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~ 517 (547)
.......+..+ .+-|+. ....++.| ++...+++.+.++.+....++.+....-.. .-+++.-+.+.+..
T Consensus 101 ~~~a~~~~gll~~IpvF~~--~~~vil~P-l~~~lak~~~~s~~~~~~~~~~~~~~~h~~-vPp~Pg~~~~a~~l----- 171 (445)
T PRK09921 101 ADVIMVLVGLICGITLFVE--VGVVLLIP-LAFSIAKKTNTSLLKLAIPLCTALMAVHCV-VPPHPAALFVANKL----- 171 (445)
T ss_pred HHHHHHHHHHHHcccHHHH--hHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHhHhc-CCCCcHHHHHHHHh-----
Confidence 11122111111 122211 12335678 667888777776433222222222122222 22445544444432
Q ss_pred CCceeehhhhHhhhhHHHHHHHHH
Q 009002 518 LGYTLSFWNHLKFGVPSTLIVTAI 541 (547)
Q Consensus 518 ~gy~i~f~df~k~G~p~~li~~iv 541 (547)
|- +-..+.-+|+|.+++..++
T Consensus 172 -g~--~lg~~~l~Gl~~~i~~~~i 192 (445)
T PRK09921 172 -GA--DIGSVIVYGLLVGLMASLV 192 (445)
T ss_pred -CC--CHHHHHHHHHHHHHHHHHH
Confidence 22 4677889999999776554
No 126
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=94.72 E-value=0.81 Score=50.88 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=91.3
Q ss_pred cCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHH-HHHHHHHHHhhhchhhHHH
Q 009002 51 VITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLC-RICLISAISSALFTNDTSC 123 (547)
Q Consensus 51 v~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~-~i~~~~~~lS~flsN~~~v 123 (547)
-.+.+|..+.+ -+++.+.....+.++..+..+|..+-+|+.+.. .++-+.++. .+..+.+++|. |||..-
T Consensus 374 ~~~~~~~~~~~~~t~k~~~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~yp~~aP~iG~lG~FiTG--S~TsSN 450 (530)
T TIGR00795 374 RVSISDAIGVFGETLKEMRLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLAFTFFSPFLGWLGVFLTG--SDTSSN 450 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCchHHHHHHHHhhhccccc--chHHHH
Confidence 34555554433 256778888888999999999999999999887 655444443 44445554433 888889
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeec-CCC--ChHHHHHhHHHHHH
Q 009002 124 VVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQ-SKI--PFGKFLIGILPAMF 189 (547)
Q Consensus 124 ~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~-~~~--~f~~f~~~~lp~~i 189 (547)
++|.++=.+.|++.|.||..++=.-+.++..|.+. .|+|+.+... .|. +=.|-++..++.++
T Consensus 451 ~LFg~lQ~~tA~~lGl~~~li~A~q~~Gg~~G~mI----sp~~I~~a~a~vg~~G~Eg~ilr~t~~~~l 515 (530)
T TIGR00795 451 LLFGSLQLLTAEQIGLPETLLLAANTVGGVMGKMI----SPQSIAIACAAVGLVGQESDLFRKTVKYSL 515 (530)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhHHHhhcc----CHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 99999999999999999876665566677666655 7899977621 121 22455555555443
No 127
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.60 E-value=1.7 Score=44.90 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=108.7
Q ss_pred HHHHHHH-HHHccCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 009002 40 LLGAMLM-VIFQVITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAI 112 (547)
Q Consensus 40 l~~~~~l-~l~gv~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~ 112 (547)
..|+.++ ..-|.++++...+.. +.-+.+.+.|.-+.|..+.-.|-..|+-+++.+.-+++...+.....+.++
T Consensus 265 ~~GA~~LA~~~~~l~w~~~~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lpgg~igFli~~~~~iF~ 344 (447)
T COG4664 265 AVGALLLALANGRLNWQMVKQALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLPGGEIGFLIVSNILIFF 344 (447)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcCCCCceeeehHHHHHHHH
Confidence 3344433 456788887655443 345667777888888888888888999988887777888888888899999
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh-hccccc-cCcccchhe-eecCCCChHHHHHhHHHHHH
Q 009002 113 SSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANI-GSSATP-IGNPQNLVI-AVQSKIPFGKFLIGILPAMF 189 (547)
Q Consensus 113 lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~-Gg~~Tp-iG~p~Nliv-~~~~~~~f~~f~~~~lp~~i 189 (547)
+.-|+|=.=.+.+.+|+...++++.|+|+..+- +-.+.|+ .|+++| +|-+---+= ......+-.|-.+...|...
T Consensus 345 LgffldffEiafIivPllaPva~~lgIDliwfG--Vll~~NlQtSFl~PPfgfslfYLrgVAp~~VTt~qIy~G~vPfil 422 (447)
T COG4664 345 LGFFLDFFEIAFIIVPLLAPVADKLGIDLIWFG--VLLGVNLQTSFLHPPFGFSLFYLRGVAPPSVTTGQIYRGAVPFIL 422 (447)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHH--HHHHHhhhhhccCCCchhhHHHhccCCCCCcchhhhhhccccHHH
Confidence 999999999999999999999999999987654 4455554 255544 442211000 02345677787777778765
Q ss_pred HHHHH
Q 009002 190 VGVAV 194 (547)
Q Consensus 190 v~~~v 194 (547)
+-+++
T Consensus 423 iqvl~ 427 (447)
T COG4664 423 IQVLV 427 (447)
T ss_pred HHHHH
Confidence 55443
No 128
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=94.47 E-value=4.3 Score=43.98 Aligned_cols=123 Identities=13% Similarity=-0.060 Sum_probs=77.1
Q ss_pred HHhCCcHHHHHHHHHHHHHHhcCCChHHHHh-------hcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchh
Q 009002 366 LLMGLNMSWTAITAALALVVLDFKDARPSLE-------KVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHV 438 (547)
Q Consensus 366 ~~~gi~~~~~al~~a~~l~~~~~~~~~~~~~-------~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~ 438 (547)
...++++.++.++++++..+.+..+..+..+ ..=-..-..|+-.-+++.-+|+||.++.+|+.+.+..+ +.
T Consensus 19 i~~kv~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G--~k 96 (442)
T COG2610 19 IKFKVHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFG--EK 96 (442)
T ss_pred HHHhhhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhC--cc
Confidence 3457888888888888777766555444432 11122223333333467789999999999999977643 33
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 009002 439 GGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVS 491 (547)
Q Consensus 439 ~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~ 491 (547)
...+.+.+.+.++|--++=-....++.| ++..++++.+.+.-..-..++.+.
T Consensus 97 r~~~Al~l~g~i~~~~vF~dv~~v~l~P-ia~alak~~~is~~~i~v~la~g~ 148 (442)
T COG2610 97 RALLALVLAGLILGIPVFFDVGFVLLIP-LAFALAKEAGISLLKIAVPLAAGL 148 (442)
T ss_pred hHHHHHHHHHHHHhhhHHhhhHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445555666666655555556777889 678888888876543333334333
No 129
>COG1288 Predicted membrane protein [Function unknown]
Probab=94.11 E-value=1.8 Score=46.25 Aligned_cols=184 Identities=13% Similarity=0.253 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCC---CccchHHHHHHHHH-HHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHH------
Q 009002 9 VVLGSIAFAIFWVMAVFPAVP---FLPIGRTAGSLLGA-MLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVY------ 78 (547)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~---~~pi~~~~~al~~~-~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~------ 78 (547)
+-+-+++|...++.++|+... .+|.- +..+++. ++..+.+-++.+|+.++|....-=++.+.++++-+
T Consensus 275 ~klvL~lf~l~f~~mI~GV~~~GW~f~ei--A~~Fl~mgIiig~I~glse~~~~~sF~~Ga~~lv~~aLiiGiARgI~li 352 (481)
T COG1288 275 DKLVLLLFTLTFVIMIWGVIVLGWWFPEI--AAQFLAMGIIIGLIGGLSENDIASSFIEGASDLLGVALIIGLARGINLI 352 (481)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhceehHHH--HHHHHHHHHHHHHHhccchhHHHHHHHHhHHHHHHHHHHHHhhhceEEE
Confidence 334445555555555554211 12321 2233333 33335556889999988876655556666666543
Q ss_pred HHHhcHHHHHHHHHHhhcCC-chhH-HHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhh
Q 009002 79 LESADMFKYLGRMLSWKSRG-PKDL-LCRICLISAISSALF-TNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIG 155 (547)
Q Consensus 79 l~~sG~~~~ia~~i~~~~~~-~~~l-l~~i~~~~~~lS~fl-sN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~G 155 (547)
+++.-+.|-+=+.......+ +..+ .+...++-++++-|+ |...-+++-.||.-.+++-.|++......+. +.|
T Consensus 353 m~~g~i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD~vgv~RqvvV~Af----q~g 428 (481)
T COG1288 353 MDDGMILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPLADLVGVPRQVVVLAF----QLG 428 (481)
T ss_pred ecCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhhHHhcCCCHHHhhhhh----hhc
Confidence 34445555555554443333 3333 344444555566555 4456788889999999999999876554333 445
Q ss_pred ccccccCcccchhee---ecCCCChHHHHHhHHHHHHHHHHHHHHH
Q 009002 156 SSATPIGNPQNLVIA---VQSKIPFGKFLIGILPAMFVGVAVNALI 198 (547)
Q Consensus 156 g~~TpiG~p~Nliv~---~~~~~~f~~f~~~~lp~~iv~~~v~~~~ 198 (547)
.-.+.+=+||.-+++ ...+++|..|+|...|+..+.++++.++
T Consensus 429 ~G~~n~I~PTSg~~ma~La~~~i~y~~W~Kfv~pl~~i~~li~~~~ 474 (481)
T COG1288 429 DGFSNIIAPTSGLLMATLAMARVPYGTWLKFVAPLLGILFLISSVV 474 (481)
T ss_pred chhhheecCchHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 555666678854444 4578999999999999887766665443
No 130
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=93.93 E-value=11 Score=40.72 Aligned_cols=95 Identities=21% Similarity=0.223 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHH
Q 009002 73 MVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHN-LPPHPFLLALASS 151 (547)
Q Consensus 73 ~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~-~~p~~~l~~~a~a 151 (547)
.+.+..+.+|-..++.=+++.+..++|+..+..+.+++.+. +++|=---.++-.=++.++||+.+ ++. |++.+-+|.
T Consensus 65 lvtG~~lA~sp~v~r~l~~la~~p~t~~~ai~~v~~vs~~~-s~inWG~gLV~gallAre~Ar~~~~vdY-~lliAaaY~ 142 (438)
T TIGR00366 65 LVTGYALAYSPIVYKLLKTIASLPKTPKQAVALVTFIGSIA-CWINWGFGLVVGAIFAREVARRVKGSDY-PLLIACAYI 142 (438)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhCCCCCCceeehHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHhccCCCH-HHHHHHHHH
Confidence 45677889999999999999888888888777766655544 344433333344445678888876 543 666666653
Q ss_pred Hh-------hhccccccCcccchhe
Q 009002 152 AN-------IGSSATPIGNPQNLVI 169 (547)
Q Consensus 152 a~-------~Gg~~TpiG~p~Nliv 169 (547)
.- .||.-..+.||-|-+.
T Consensus 143 G~~~W~~GlS~S~pl~~at~g~~l~ 167 (438)
T TIGR00366 143 GFLTWHGGLSGSMPLLAATPNNPLK 167 (438)
T ss_pred HHHHHhcchHHHHHHHhcCCCChhh
Confidence 32 1233334556666544
No 131
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=93.34 E-value=1.6 Score=47.66 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=86.2
Q ss_pred HHHHHHHccCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHhh
Q 009002 43 AMLMVIFQVITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLL-CRICLISAISSA 115 (547)
Q Consensus 43 ~~~l~l~gv~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll-~~i~~~~~~lS~ 115 (547)
+.+-.+.--++++++.+.+ -|..++.+.+.+.++..+..+|.-.-+++.+... +..+.++ -.+..+..++|.
T Consensus 353 ~iIs~~i~~~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~fp~fSp~lGwiG~FltG 431 (522)
T COG1620 353 ALISILLLKIKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEAFPLFSPFLGWIGVFLTG 431 (522)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCCchhHhHHHHHHhhhhcc
Confidence 3333344467888877654 3677889999999999999999999999988765 4433333 455666666654
Q ss_pred hchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheee
Q 009002 116 LFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAV 171 (547)
Q Consensus 116 flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~ 171 (547)
|||..-+++-|+=...|++.|.||..++=.-+.++..|- .=.|+|+.+..
T Consensus 432 --S~T~sN~lFg~lQ~~~A~~iG~s~~l~~AantvGg~~gk----MIspqsIa~ac 481 (522)
T COG1620 432 --SNTSSNLLFGPLQQTTAEQIGLSPVLLVAANTVGGVMGK----MISPQSIAAAC 481 (522)
T ss_pred --cchHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhcc----ccCHHHHHHHH
Confidence 677778899999999999999998655433333333333 23799997763
No 132
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=92.91 E-value=2.1 Score=43.81 Aligned_cols=104 Identities=16% Similarity=0.014 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHhhcCCc
Q 009002 402 LLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLA-SNVPTVLLLGGRVAASAAAISAADE 480 (547)
Q Consensus 402 ~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~i-sN~p~~~ll~P~ia~~~a~~~~~~~ 480 (547)
+++++...+.+++.++++|..+.+.+.+.+... +........++++.+++-.. ||..+.+++.| +....++..|.++
T Consensus 163 ~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~-~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~p-i~~~l~~~~g~~~ 240 (303)
T PF03553_consen 163 TIIILILAGALGGILEKTGVLDALVNKLLKKIK-SPRSLPAVTFLLSIIISFATGSSWGTIAIMGP-IFKPLAEKMGISP 240 (303)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-CccHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhcccH
Confidence 566666677899999999977777776654321 11122223334444444333 56677777788 5678888888887
Q ss_pred hHHHHHHHHHHHhhcChhhhhhhhhHH
Q 009002 481 KKAWLILAWVSTVAGNLSLVGSAANLI 507 (547)
Q Consensus 481 ~~~~~~l~~~~~~gg~~TpiGs~aNli 507 (547)
...--.+.-+++.+.++.|+...+-..
T Consensus 241 ~~~a~ai~~~~~~g~~l~P~s~~~i~~ 267 (303)
T PF03553_consen 241 PLLAGAIESGATFGDPLSPWSDTTILS 267 (303)
T ss_pred HHHHHHHHhhhhhcCCCCcchHHHHHH
Confidence 654444556688899999999754433
No 133
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.35 E-value=1.9 Score=48.42 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=29.8
Q ss_pred CCcc--hhhhhhccc-----ccccccCCcccccCCC---CCcccccchhh
Q 009002 288 SGTF--ESARITNES-----KEVSTDGGSQRREETV---PSRGIGSVITL 327 (547)
Q Consensus 288 ~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~l~~gd~l 327 (547)
+|++ ||++|.+++ +++..+.+++|++++. .+..++.||++
T Consensus 311 ~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~g~~i~~~~d~~L~~GD~L 360 (562)
T TIGR03802 311 NKEYNGKTVAEILKNAQQFMRHGVYVEKIKRDDQPLPILPETVLQRGDVV 360 (562)
T ss_pred CcccCCccHHHHhccccccccCCeEEEEEeeCCccccCCCCCEecCCCEE
Confidence 3444 899999987 4566778999987762 44557999988
No 134
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=91.31 E-value=2.4 Score=44.71 Aligned_cols=182 Identities=18% Similarity=0.236 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHH----HHccCChHHHHhcCC--hhHHHHHHHHHHHHHHHHHhc
Q 009002 10 VLGSIAFAIFWVMAVFPAVPFLPIGRTAGSLLGAMLMV----IFQVITPDQAYAAID--LPILGLLFGTMVVSVYLESAD 83 (547)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~~~pi~~~~~al~~~~~l~----l~gv~~~~~a~~~~~--~~~i~~l~~~~il~~~l~~sG 83 (547)
-+.+=.....|+.+.+. .|...+.++|....+ ++|+.+-.+.-++|. .|--.++.--|.+++.+.+..
T Consensus 301 ~L~vQa~~~vwLi~~LA------~HlA~VGlIGLsVIil~Taf~Git~EH~iGkAFeEaLPFTALL~VFF~vVaVI~dQ~ 374 (515)
T PF06450_consen 301 KLIVQALIGVWLIVALA------FHLAEVGLIGLSVIILATAFCGITDEHAIGKAFEEALPFTALLVVFFAVVAVIIDQH 374 (515)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHhcCCcchhhhhHhHhhccchHHHHHHHHHHHHHHhhhh
Confidence 33333334455544433 333455566653332 567776655444442 233333444578889999999
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHH---HHHHHHHHhhhccccc
Q 009002 84 MFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPF---LLALASSANIGSSATP 160 (547)
Q Consensus 84 ~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~---l~~~a~aa~~Gg~~Tp 160 (547)
+|+-+-++.....++ .-+..+.+.-.++|+..||+-+..+-+-=+..--+.-.++...+ ..++-.+.|+=|.+||
T Consensus 375 LF~PiI~~VL~~~~~--~Ql~~fy~aNGlLS~iSDNVFV~TVYI~E~k~A~~~G~Is~~qf~~LAVAINTGTNlPSVATP 452 (515)
T PF06450_consen 375 LFTPIIQFVLSAEGS--SQLAMFYIANGLLSMISDNVFVATVYINEVKAALDAGVISREQFDLLAVAINTGTNLPSVATP 452 (515)
T ss_pred hhHHHHHHHHcCCCc--cchhHHHHhhhhHHhhccceeEEEEeHhhHHHHHHcCCcCHHHHhhHHhhhhcCCCCCcCcCC
Confidence 999999987644332 33445567789999999998665544333333233334555544 2233344555566677
Q ss_pred cCcccchheeec-----CCCChHHHHHhHHHHHHHHHHHHHHHH
Q 009002 161 IGNPQNLVIAVQ-----SKIPFGKFLIGILPAMFVGVAVNALIL 199 (547)
Q Consensus 161 iG~p~Nliv~~~-----~~~~f~~f~~~~lp~~iv~~~v~~~~~ 199 (547)
=|...-+..... -.+|+++..+..+|.+++-.+++....
T Consensus 453 NGQAAFLFLLTSalAPLirLSYgrMV~MAlPYTiVl~~vGl~~v 496 (515)
T PF06450_consen 453 NGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLVGLLAV 496 (515)
T ss_pred CchhHHHHHHHHhhHHHHHHhHhhHHhHhccHHHHHHHHHHHHH
Confidence 665555544422 247888999999999988777665443
No 135
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=90.57 E-value=9.9 Score=38.76 Aligned_cols=141 Identities=11% Similarity=0.163 Sum_probs=82.9
Q ss_pred hHHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcch-hhHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009002 391 ARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDH-VGGIAVLAAVILVLSNLASNVPTVLLLGGRVA 469 (547)
Q Consensus 391 ~~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~-~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia 469 (547)
.++.++.+.|..++==. +=.++.-+.+.|..|.+++.+......+. ...+..-++-..+.|.+|.|-=++- |++.
T Consensus 153 ~~Rll~~vG~a~iLPQl-LAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF---~ViT 228 (308)
T PF06166_consen 153 SRRLLDQVGWAAILPQL-LAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAF---PVIT 228 (308)
T ss_pred HHHHHHHhhHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHh---HHHH
Confidence 46778899998876322 22355566889999999999876644222 1222222233466788888864332 2222
Q ss_pred HHHH-----HhhcCCchHHHHHHHHHHHhhc-ChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHh
Q 009002 470 ASAA-----AISAADEKKAWLILAWVSTVAG-NLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGL 543 (547)
Q Consensus 470 ~~~a-----~~~~~~~~~~~~~l~~~~~~gg-~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~ 543 (547)
..++ ++.|.||. ..-.+.+.+..|| -+||+++==|++=...+|- +..|. -.|.=.|..++.+++=+
T Consensus 229 aGIGiPfvi~~~GgnPa-ivgAlgM~aGyCGTLmTPMAANFNiVPaALLEl--kDk~g-----VIKaQ~p~Al~llvv~I 300 (308)
T PF06166_consen 229 AGIGIPFVIAQFGGNPA-IVGALGMTAGYCGTLMTPMAANFNIVPAALLEL--KDKYG-----VIKAQAPTALVLLVVNI 300 (308)
T ss_pred hccCceEEEecCCCCHH-HHHHHHHhhcchhcccChhhhhcCcchHHHhcC--Ccccc-----chhhhhHHHHHHHHHHH
Confidence 2221 23366664 3344555566666 5899998888886666654 23443 24666677766665443
No 136
>COG4756 Predicted cation transporter [General function prediction only]
Probab=89.59 E-value=0.36 Score=47.74 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=50.9
Q ss_pred HHHhhhchhhHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHH
Q 009002 111 AISSALFTNDTSCV-VLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMF 189 (547)
Q Consensus 111 ~~lS~flsN~~~v~-i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~i 189 (547)
..+|+..||.+.++ -+.|-.-..- -+..+|.+.++ ||++-| ||-||+...+...++++||.+.+.|..+
T Consensus 277 n~~SAv~DNATL~AAevgP~lteeq------irsalmsLvIs---GGmlIP-GNiPNIV~AGrLrItm~EWar~gvP~Gi 346 (367)
T COG4756 277 NLLSAVADNATLVAAEVGPELTEEQ------IRSALMSLVIS---GGMLIP-GNIPNIVMAGRLRITMKEWARLGVPVGI 346 (367)
T ss_pred HHHHHHhcchhhHHHHhCcHhhHHH------HHHHHHHHHHc---CCeecC-CCCcceeeeeeEEeehhhHHHhcccHHH
Confidence 34788889987655 4555432111 12345555543 677666 9999999999999999999999999877
Q ss_pred HHHH
Q 009002 190 VGVA 193 (547)
Q Consensus 190 v~~~ 193 (547)
..++
T Consensus 347 a~~~ 350 (367)
T COG4756 347 AVFI 350 (367)
T ss_pred HHHH
Confidence 6444
No 137
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=87.61 E-value=18 Score=39.19 Aligned_cols=128 Identities=10% Similarity=-0.005 Sum_probs=76.0
Q ss_pred cCChHHHHhcCCh------hHHHHHHHHHHHHHHHHHhcHHH-----HHHHHHHhhcCCchhHHHHHHHHHHHHhhhchh
Q 009002 51 VITPDQAYAAIDL------PILGLLFGTMVVSVYLESADMFK-----YLGRMLSWKSRGPKDLLCRICLISAISSALFTN 119 (547)
Q Consensus 51 v~~~~~a~~~~~~------~~i~~l~~~~il~~~l~~sG~~~-----~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN 119 (547)
..+++|..+.+.. ..++.+.--=-+...++++|+.+ .+++.+.... ++...-...++.++++.-|+..
T Consensus 291 ~~tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a-~~~~f~l~~~l~~~liNfFIPS 369 (438)
T TIGR00366 291 HKTPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVA-NKDTFPLMTFFSAGLINIFIPS 369 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhC-CccHHHHHHHHHHHHHHhcccC
Confidence 6778887766532 11111111122334458888888 7776665433 2233333444677777777765
Q ss_pred hH-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHH
Q 009002 120 DT-SCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLI 182 (547)
Q Consensus 120 ~~-~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~ 182 (547)
-. =.++..|+++.+++..|++|....++..++-...-+.+|.=.-|= ..-.|++..|-+-
T Consensus 370 GsGqwai~aPImvP~a~~LGvs~~~tv~Ay~~GD~~tNlI~PfWaLP~---L~i~gL~arDImG 430 (438)
T TIGR00366 370 GGGHWAIQGPIVIPAAQALGVDLGKSVMAIAYGDAWTNMAQPFWALPA---LGIAGLGARDIMG 430 (438)
T ss_pred chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHhHHHhhHHHHHHH---HHHcCCcHHHHhh
Confidence 54 477999999999999999999888777777665444433211111 1334566666543
No 138
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=85.10 E-value=4.5 Score=36.89 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHHHHHcCCCchHHHH
Q 009002 68 LLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTN-DTSCVVLTEFVLKIARQHNLPPHPFLL 146 (547)
Q Consensus 68 ~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN-~~~v~i~~Pi~~~ia~~~~~~p~~~l~ 146 (547)
++.|+-.+++++++-.- +.+-+.+.+..++|+..++ ..++++..+.. ++++.+.. .++..--+++ +-.+
T Consensus 2 ~l~gl~~l~~~l~~~~~-~~~~~~l~~~~~~~~~~~l----~G~~~T~l~QSSsa~~~i~v----~l~~~g~l~~-~~al 71 (142)
T PF02690_consen 2 FLFGLRLLSSGLKPLAG-PRLRALLARLTSNPLLAFL----LGALLTALVQSSSAVTLIVV----SLVAAGVLSL-EQAL 71 (142)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHH----HHHHHHHHhcchHHHHHHHH----HHHHhcccCH-HHHH
Confidence 67899999999988776 6666666666667754443 33444444433 44444444 4454444544 5567
Q ss_pred HHHHHHhhhccccc
Q 009002 147 ALASSANIGSSATP 160 (547)
Q Consensus 147 ~~a~aa~~Gg~~Tp 160 (547)
++.+++|+|++.|+
T Consensus 72 ~~ilGaNiGtt~~~ 85 (142)
T PF02690_consen 72 AIILGANIGTTITA 85 (142)
T ss_pred HHHHhhhHHHHHHH
Confidence 99999999986654
No 139
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=83.35 E-value=26 Score=37.46 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchhee-------ecCCCChH
Q 009002 106 ICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIA-------VQSKIPFG 178 (547)
Q Consensus 106 i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~-------~~~~~~f~ 178 (547)
++.-+..+|+|.||-+..-+-. .--|.+. .+-.++.-+|-.||-+|-|.|.||.--. ..++++-.
T Consensus 347 lf~ga~~LTa~tDNAalTYLgs-------lv~g~sd-~~kYalVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~~Is~~ 418 (438)
T PF07399_consen 347 LFFGATALTAFTDNAALTYLGS-------LVPGLSD-AFKYALVAGAVTGGGLTVIANAPNPAGQAILRKHFPDGSISPL 418 (438)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-------hccCCCH-HHHHHHHhheeccCceeEeccCCChhhHHHHhccCCCCCcChH
Confidence 4455777999999988655421 1123432 3335777888889999999999998443 23457777
Q ss_pred HHHHhHHHHHHHHH
Q 009002 179 KFLIGILPAMFVGV 192 (547)
Q Consensus 179 ~f~~~~lp~~iv~~ 192 (547)
.-+...++++++..
T Consensus 419 ~L~l~AL~PT~ia~ 432 (438)
T PF07399_consen 419 GLFLAALPPTLIAA 432 (438)
T ss_pred HHHHHHHhHHHHHH
Confidence 66666666666543
No 140
>COG4756 Predicted cation transporter [General function prediction only]
Probab=81.88 E-value=2.3 Score=42.23 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHH--HHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCCh
Q 009002 107 CLISAISSALFTNDTSCVVLTEFVLKI--ARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPF 177 (547)
Q Consensus 107 ~~~~~~lS~flsN~~~v~i~~Pi~~~i--a~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f 177 (547)
.+.-.+.|+.+|-..+++++.-+..-. .|+.+. ++..--+|+-..|..+||+|.|-..+.....+-+|
T Consensus 121 ~f~lGL~SSvISviV~AvIlAEia~~~n~~r~~Kv---~~vVya~FAvG~GAALtPiGEPLSTIav~KLn~~F 190 (367)
T COG4756 121 IFGLGLSSSVISVIVAAVILAEIAGFANAPRAYKV---RAVVYAAFAVGAGAALTPIGEPLSTIAVAKLNQGF 190 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhce---eeeeeeeehhccccccCcCCCccHHHHHHHHccCe
Confidence 334455677888888888877554322 222222 34445567778899999999999998887655444
No 141
>PRK03818 putative transporter; Validated
Probab=81.63 E-value=6.5 Score=44.11 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=28.0
Q ss_pred hhhhhhccccc-ccccCCcccccCCC---CCcccccchhh
Q 009002 292 ESARITNESKE-VSTDGGSQRREETV---PSRGIGSVITL 327 (547)
Q Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~l~~gd~l 327 (547)
||++|.+++++ +..+.+++|++++. .+.+++.||++
T Consensus 304 kTL~eL~~r~~~Gv~VlaI~R~g~~l~~~~d~~Lq~GD~L 343 (552)
T PRK03818 304 KKLRDLHLKNKYGVVISRLNRAGVELVASPDLSLQFGDIL 343 (552)
T ss_pred CcHHHhcccccCCeEEEEEeECCeecCCCCCCEEecCCEE
Confidence 89999999876 55678898877662 34457999988
No 142
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=81.13 E-value=95 Score=34.38 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHhhc
Q 009002 400 YSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLA--SNVPTVLLLGGRVAASAAAISA 477 (547)
Q Consensus 400 w~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~i--sN~p~~~ll~P~ia~~~a~~~~ 477 (547)
|.-++.......++.-+.++|....+++.+... + ..- ..+.-+..++..|+ ||+..-+++.| +....|++.|
T Consensus 379 ~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G--~~f--p~fSp~lGwiG~FltGS~T~sN~lFg~-lQ~~~A~~iG 452 (522)
T COG1620 379 KLPILTIIFALAMAYLMNYSGLSKTLALALAHT-G--EAF--PLFSPFLGWIGVFLTGSNTSSNLLFGP-LQQTTAEQIG 452 (522)
T ss_pred HHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-C--CCc--hhHhHHHHHHhhhhcccchHHHHHHHH-HHHHHHHHcC
Confidence 666778888999999999999998888887543 1 111 12223344555555 58888888888 7889999999
Q ss_pred CCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHH
Q 009002 478 ADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTA 540 (547)
Q Consensus 478 ~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~i 540 (547)
.++. . ++...+.||.+--+=|+.|+.+.-...+. -|- =.|-+|.-++.+++..+
T Consensus 453 ~s~~-l---~~AantvGg~~gkMIspqsIa~acaavg~--~gk---Eg~l~r~tv~~sl~~~~ 506 (522)
T COG1620 453 LSPV-L---LVAANTVGGVMGKMISPQSIAAACAAVGL--VGK---EGDLLRKTVKPSLIYLI 506 (522)
T ss_pred CCHH-H---HHHHHhhhhhhccccCHHHHHHHHHHhcc--ccc---hhHHHHHHHHHHHHHHH
Confidence 9864 2 22224444433322345666543321110 121 15556666655555444
No 143
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=80.65 E-value=67 Score=32.95 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=85.5
Q ss_pred HhcCChhHHH--HHHHHHHHHHHHHHhcHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHhhhchhhHHHHHH------H
Q 009002 58 YAAIDLPILG--LLFGTMVVSVYLESADMFKYLGRMLSWKSR--GPKDLLCRICLISAISSALFTNDTSCVVL------T 127 (547)
Q Consensus 58 ~~~~~~~~i~--~l~~~~il~~~l~~sG~~~~ia~~i~~~~~--~~~~ll~~i~~~~~~lS~flsN~~~v~i~------~ 127 (547)
.+.++|..++ +++ .++..+.++|+-|.+++.+..... +........|+--+++++.+-|--++.-. +
T Consensus 157 l~~vG~a~iLPQlLA---aLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGi 233 (308)
T PF06166_consen 157 LDQVGWAAILPQLLA---ALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGIGI 233 (308)
T ss_pred HHHhhHHHHHHHHHH---HHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHhHHHHhccCc
Confidence 3557776664 333 367788999999999998876543 45566667777788899999998765533 3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHH-HHhhhccccccCcccchheeecCCCC-hHHHHHhHHHHHHHHHHHHHHHHHH
Q 009002 128 EFVLKIARQHNLPPHPFLLALAS-SANIGSSATPIGNPQNLVIAVQSKIP-FGKFLIGILPAMFVGVAVNALILLT 201 (547)
Q Consensus 128 Pi~~~ia~~~~~~p~~~l~~~a~-aa~~Gg~~TpiG~p~Nliv~~~~~~~-f~~f~~~~lp~~iv~~~v~~~~~~~ 201 (547)
|+++ +++|-||.... ++++ +.-||-.+||...--|++=..-.+++ =..-.|.=.|..++-+++.+.++++
T Consensus 234 Pfvi---~~~GgnPaivg-AlgM~aGyCGTLmTPMAANFNiVPaALLElkDk~gVIKaQ~p~Al~llvv~I~LMy~ 305 (308)
T PF06166_consen 234 PFVI---AQFGGNPAIVG-ALGMTAGYCGTLMTPMAANFNIVPAALLELKDKYGVIKAQAPTALVLLVVNIVLMYF 305 (308)
T ss_pred eEEE---ecCCCCHHHHH-HHHHhhcchhcccChhhhhcCcchHHHhcCCccccchhhhhHHHHHHHHHHHHHHHH
Confidence 4432 45688886543 5554 44477888999877776433211110 0112344456666666655544443
No 144
>PRK10519 hypothetical protein; Provisional
Probab=80.08 E-value=33 Score=31.65 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=69.0
Q ss_pred cCh-hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 009002 398 VSY-SLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAIS 476 (547)
Q Consensus 398 idw-~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~ 476 (547)
+-| +.+-.+...+++++.++++|+.|++++.+.+..+.-..++-.. ..+++.++|--..+..+.... ++.
T Consensus 21 i~~~~iiP~li~~~v~I~iL~~sG~ld~l~~~l~Pvm~llGLPgea~----~vll~g~ls~~~a~~vl~~L~-----~~G 91 (151)
T PRK10519 21 IATTNLLPNVLMAFVIIQALNITGLLDLVGHIFGPVMALFGLPGEAA----TVLLAAWMSMGGAVGVAASLF-----TAG 91 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCCHHHH----HHHHHHHHhHHHHHHHHHHHH-----HcC
Confidence 557 5888899999999999999999999999977543211111112 334444555333333333321 111
Q ss_pred cCCchHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhhcC
Q 009002 477 AADEKKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR 547 (547)
Q Consensus 477 ~~~~~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~i~ 547 (547)
..++.+. .++....-=.++++++..-++.. .|.+ ..|.+.-+-++++...++.++.|
T Consensus 92 ~LT~~Q~---~VL~~~~~l~g~~~~~~~r~~~~--------~~~~---~~~~~~~~~~~~~~a~~~~~~m~ 148 (151)
T PRK10519 92 ALTGHHV---TILLPAIYLMGSQVQYMGRILGV--------AEVN---AKYYPHLIAVCIINALLAMLVMR 148 (151)
T ss_pred CCCHHHH---HHHHHHHHHhchHHHHHHHhhhc--------cCCC---cchhHHHHHHHHHHHHHHHHHHH
Confidence 2233322 11112222233444444444322 2333 44667777778887777776643
No 145
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=75.62 E-value=90 Score=34.54 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHh---hcC-CchhHHHHHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHcCCCchHHHH
Q 009002 72 TMVVSVYLESADMFKYLGRMLSW---KSR-GPKDLLCRICLISAISSALFTNDTS-CVVLTEFVLKIARQHNLPPHPFLL 146 (547)
Q Consensus 72 ~~il~~~l~~sG~~~~ia~~i~~---~~~-~~~~ll~~i~~~~~~lS~flsN~~~-v~i~~Pi~~~ia~~~~~~p~~~l~ 146 (547)
.--....++.|++...+|-+-.. ..+ +...++..+.++++++--|+..-.+ =+++.|+.+.+--..|++|..--.
T Consensus 348 aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~SaKWailAPifVPM~m~lg~sP~~tQ~ 427 (502)
T PF03806_consen 348 AAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSASAKWAILAPIFVPMFMLLGYSPALTQA 427 (502)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcchhhHHHHHhHHHHHHHHcCCCHHHHHH
Confidence 34455678999999999875443 223 3567778888889999888877665 568999999999999999854321
Q ss_pred HHHHHHhhhccccccCcccchhee------ec--CCCChHHHHHhHHHHHHHHHHHH
Q 009002 147 ALASSANIGSSATPIGNPQNLVIA------VQ--SKIPFGKFLIGILPAMFVGVAVN 195 (547)
Q Consensus 147 ~~a~aa~~Gg~~TpiG~p~Nliv~------~~--~~~~f~~f~~~~lp~~iv~~~v~ 195 (547)
+ ==+|-..|-+=+|-|-+.. ++ .+.++++.+..++|.++.-+++-
T Consensus 428 a----YRigDS~TN~ItPl~~yf~lil~~~qkY~k~~giGTlis~mlPysi~~lv~w 480 (502)
T PF03806_consen 428 A----YRIGDSSTNIITPLMPYFPLILGFAQKYDKKAGIGTLISLMLPYSIAFLVVW 480 (502)
T ss_pred H----HHhccccccccCccHHHHHHHHHHHHHhCcCccHHHHHHHHHHHHHHHHHHH
Confidence 1 1245555655566664432 22 34778899999999987655443
No 146
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=71.74 E-value=22 Score=36.80 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHH----HHHccCChHHHHhc----CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHH
Q 009002 34 GRTAGSLLGAMLM----VIFQVITPDQAYAA----IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCR 105 (547)
Q Consensus 34 ~~~~~al~~~~~l----~l~gv~~~~~a~~~----~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~ 105 (547)
|...+.++|.... -++|+.+....-+. .++..++. --|-++..+.+..++.-+-+....... ..-+..
T Consensus 319 HlA~VGliGLsvIilaTsftGvt~EH~iGkAFqEsLPFTALL~--VFFsvVAVIidQ~LF~PiIqfVL~a~~--~~Ql~l 394 (516)
T COG3067 319 HLAEVGLIGLSVIILATSFTGVTDEHAIGKAFQESLPFTALLT--VFFSVVAVIIDQHLFSPIIQFVLQASE--HAQLSL 394 (516)
T ss_pred HHHHHhhhhhHHHHHHHhhcCCcchhhhHHHHHhcCcHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHcCCc--ccchhH
Confidence 3344455555333 36787766554433 44544443 346677778888888888887654433 344455
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcC-CCchHH---HHHHHHHHhhhccccccCcccchheeec-----CCCC
Q 009002 106 ICLISAISSALFTNDTSCVVLTEFVLKIARQHN-LPPHPF---LLALASSANIGSSATPIGNPQNLVIAVQ-----SKIP 176 (547)
Q Consensus 106 i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~-~~p~~~---l~~~a~aa~~Gg~~TpiG~p~Nliv~~~-----~~~~ 176 (547)
+.+.-.++|+..||+-+..+-+-=+.+. -+.| +++..+ ..++--+.|+-|.+||=|...-+..... -.++
T Consensus 395 fyifNGLLS~iSDNVFV~TvYInE~k~A-l~~G~is~~qfelLaVAINTGTNLPSVATPNGQAAFLFLLTSalaPLiRLS 473 (516)
T COG3067 395 FYIFNGLLSSISDNVFVGTIYINEAKAA-LEAGAISLKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLS 473 (516)
T ss_pred HHHHhhHHHhhccceEEEEEEehhHHHH-HHcCCcCHHhhhHhhehhhcCCCCCcccCCCchhhHHHHHHhhhhHHHhhh
Confidence 6677889999999986554433333222 2334 455443 2223344555566666665555544322 1367
Q ss_pred hHHHHHhHHHHHHHHHHHH
Q 009002 177 FGKFLIGILPAMFVGVAVN 195 (547)
Q Consensus 177 f~~f~~~~lp~~iv~~~v~ 195 (547)
+++...+.+|.+++.-+++
T Consensus 474 YGRMV~MAlPYTlvl~~iG 492 (516)
T COG3067 474 YGRMVWMALPYTLVLTLVG 492 (516)
T ss_pred hcceeeeeccHHHHHHHHH
Confidence 7777777888887655543
No 147
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=71.23 E-value=1.6e+02 Score=32.13 Aligned_cols=93 Identities=26% Similarity=0.203 Sum_probs=67.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCc
Q 009002 62 DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPP 141 (547)
Q Consensus 62 ~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p 141 (547)
+++-+.++...|.=...-|+||+++.+=+++.+. .|++++....++.+++|...+.- .-+++.|+.--+-...|..|
T Consensus 88 ~FpPLG~VLv~mLGigvAE~SGll~alm~~~~~~--~pk~llt~~vvfigi~s~~asDa-ayVVlpPlaAmiF~a~GRHP 164 (516)
T COG2978 88 GFPPLGTVLVVMLGIGVAERSGLLSALMRKLLNK--VPKRLLTFTVVFIGILSHIASDA-AYVVLPPLAAMIFIALGRHP 164 (516)
T ss_pred CCCchHHHHHHHHhhhhhhhcccHHHHHHHHHhh--cchHHHhhHHHHHHHHHHHHhhc-ceeEecchHHHHHHHhCCCc
Confidence 4677777777666666779999999988877643 47888877777788777766544 44566788777777888888
Q ss_pred hHHHHHHHHHHhhhccc
Q 009002 142 HPFLLALASSANIGSSA 158 (547)
Q Consensus 142 ~~~l~~~a~aa~~Gg~~ 158 (547)
. --++.+||+--||+.
T Consensus 165 l-AGlaaafAgvsgGfs 180 (516)
T COG2978 165 L-AGLAAAFAGVSGGFS 180 (516)
T ss_pred H-HHHHHHHhhcccccc
Confidence 4 345778888766654
No 148
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=70.79 E-value=1.4e+02 Score=31.17 Aligned_cols=125 Identities=20% Similarity=0.233 Sum_probs=68.7
Q ss_pred HHHh-cCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhh--HHHHHHHHHHHH
Q 009002 56 QAYA-AIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTND--TSCVVLTEFVLK 132 (547)
Q Consensus 56 ~a~~-~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~--~~v~i~~Pi~~~ 132 (547)
|.++ .++-..+++++..|+--+.+|+||+.|-.++... ....|..++...-++. .+.+.. +.+.+-.|+...
T Consensus 250 e~lkrafnprI~~lliavmvfk~vIe~SGl~e~~ae~~l-~f~aP~al~l~~~fii----GlaTGI~fayvsiafPlL~p 324 (388)
T COG1906 250 EVLKRAFNPRIVLLLIAVMVFKEVIEHSGLVEIFAEIML-SFHAPVALFLLLTFII----GLATGIEFAYVSIAFPLLMP 324 (388)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHhccHHHHHHHHHh-ccchhhHHHHHHHHHH----HHhhhhHHHHHHHhhhhhHH
Confidence 4443 4777788999999999999999999996665542 2234554444332333 333332 345566777766
Q ss_pred HHHHcCCCchHHHHHHHHHHhhhccccccCcccch-hee--ecCCCChHHHH-HhHHHHHHHHHHH
Q 009002 133 IARQHNLPPHPFLLALASSANIGSSATPIGNPQNL-VIA--VQSKIPFGKFL-IGILPAMFVGVAV 194 (547)
Q Consensus 133 ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nl-iv~--~~~~~~f~~f~-~~~lp~~iv~~~v 194 (547)
.-+.. + . .+++++...+|.+ =+|..+ ++. ++.+-...+-- +..+|..+...++
T Consensus 325 ff~g~--~--~--lalay~ggy~Gvm---lSPvHlClVlsaeyy~~ei~kvyrklllpavlt~~l~ 381 (388)
T COG1906 325 FFTGF--K--K--LALAYAGGYMGVM---LSPVHLCLVLSAEYYKAEIGKVYRKLLLPAVLTFALV 381 (388)
T ss_pred Hhccc--h--H--HHHHHHhhhhhee---cchhhhhhheeHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55431 1 2 3555555444432 245554 222 34455554444 4445654544433
No 149
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=64.53 E-value=40 Score=34.87 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHH
Q 009002 66 LGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFL 145 (547)
Q Consensus 66 i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l 145 (547)
-+++.||-.+++++++.. -+++-+.+.+.+++|..-++ ...++++.+.+..++..+ +++.+. .|+=+.+--
T Consensus 12 gl~l~Gl~~~~~~l~~~~-g~~~~~~l~~~t~~~~~a~l----~G~~~Tal~QSSsa~t~i---~i~lv~-~G~l~~~~a 82 (307)
T TIGR00704 12 AFLLWGMHIVRTGVMRVF-GARLRTVLSRSTEKKPLAFL----AGIGVTAIVQSSNATTVL---VISFVA-AGVLSLAPA 82 (307)
T ss_pred HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHcCCcHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHH-CCCCCHHHH
Confidence 357888889999998773 45666666666777755443 233445555554444442 234443 454455667
Q ss_pred HHHHHHHhhhccccc
Q 009002 146 LALASSANIGSSATP 160 (547)
Q Consensus 146 ~~~a~aa~~Gg~~Tp 160 (547)
+++.++||+|++.|.
T Consensus 83 l~iilGANiGTt~t~ 97 (307)
T TIGR00704 83 IVIILGANVGTTLTA 97 (307)
T ss_pred HHHHHHhhHHHHHHH
Confidence 899999999987654
No 150
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=61.95 E-value=76 Score=34.60 Aligned_cols=126 Identities=11% Similarity=0.089 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHcCCCch
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTS-CVVLTEFVLKIARQHNLPPH 142 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~-v~i~~Pi~~~ia~~~~~~p~ 142 (547)
|--.=++|||. ..++...++.+.+++.++..+. +...=+..++-++++.-|+-.-.- =++=.|++++-+++.|.|+.
T Consensus 319 PfYAGImGmm~-~sgl~g~sLa~~is~~fvsiat-~~TfP~~~flsagivn~FVPSGGGqWaVqgP~~~~Aa~~Lgv~~~ 396 (453)
T PF02667_consen 319 PFYAGIMGMMT-GSGLGGVSLAQVISNFFVSIAT-PTTFPLFTFLSAGIVNFFVPSGGGQWAVQGPIVMPAAQALGVDLG 396 (453)
T ss_pred hHHHHHHHHHh-hcCCCcchHHHHHHHHHHHhcC-CccHHHHHHHHHHHheeEecCCCceEEEecchHHHHHHHhCCCHH
Confidence 44445666654 3345555588899998876653 222222233344445555544332 23556999999999999999
Q ss_pred HHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHHHHHHHHHHH
Q 009002 143 PFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGILPAMFVGVAV 194 (547)
Q Consensus 143 ~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~lp~~iv~~~v 194 (547)
+..|+.+++-...-+.-|+=.-| +.+-.|++..|.+-..+...++..++
T Consensus 397 ~~~ma~a~Gda~tNmiQPFWaLP---lL~I~GL~aRDImGy~~~~ll~~~~i 445 (453)
T PF02667_consen 397 KTVMAYAWGDAWTNMIQPFWALP---LLGIAGLKARDIMGYCVVILLVSGII 445 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 99999988876533222211000 01446889999987766555544443
No 151
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=59.00 E-value=1.8e+02 Score=28.37 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=100.7
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHhcCCChHHHHh-----hcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcc
Q 009002 362 MLVSLLMGLNMSWTAITAALALVVLDFKDARPSLE-----KVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEID 436 (547)
Q Consensus 362 ~i~~~~~gi~~~~~al~~a~~l~~~~~~~~~~~~~-----~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~ 436 (547)
+++++.+.+++-.+.+++++.--+.+..+..|.++ =+|-+.+-+|.=.+++.+-+|+.|+-+.-.+++.+.-+..
T Consensus 10 IvvGFalk~d~ilVV~vAgivTgLvaG~~~~~iL~~lG~aFv~nR~mslf~l~LPvIGllER~GLke~A~~lI~kik~aT 89 (218)
T PF06149_consen 10 IVVGFALKLDPILVVLVAGIVTGLVAGMSFVEILETLGKAFVDNRYMSLFILTLPVIGLLERYGLKERAANLIGKIKGAT 89 (218)
T ss_pred HHhhHHHhccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Confidence 34455566666666666666666666667665542 2667777777777999999999999999888887653321
Q ss_pred hhhHHHHHHH----HHHHHH--HhhchHHHH-HHHHHHHHHHHHHhhc--CCch--HHHHHHHHHHHhhcC----hhhhh
Q 009002 437 HVGGIAVLAA----VILVLS--NLASNVPTV-LLLGGRVAASAAAISA--ADEK--KAWLILAWVSTVAGN----LSLVG 501 (547)
Q Consensus 437 ~~~~~~~l~~----v~~~lS--~~isN~p~~-~ll~P~ia~~~a~~~~--~~~~--~~~~~l~~~~~~gg~----~TpiG 501 (547)
.+.++..+. ++..++ .+=.+.-.+ -+..| .+..+++... .++. ...-..+..+..-|| -.=+|
T Consensus 90 -~Gril~~Yl~iR~i~aa~gl~~lGGh~QfVRPLi~P-MaeaAae~~~g~l~e~~~e~ika~aAA~eN~gnFFgqniFva 167 (218)
T PF06149_consen 90 -AGRILSVYLLIREIAAAFGLTRLGGHAQFVRPLIAP-MAEAAAEAKYGELSEKDREKIKAMAAAAENYGNFFGQNIFVA 167 (218)
T ss_pred -HHHHHHHHHHHHHHHHHhCCcccCCCCccccchhhh-HHHHHHhhccCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 223333332 222221 111111111 12335 3344443222 1211 111122222222121 22445
Q ss_pred hhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhh
Q 009002 502 SAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 502 s~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~ 544 (547)
+..-+++.+.+++ -||+++-.+-.++++|..++.+++...
T Consensus 168 ~~gvLLi~gtl~~---~G~~v~~~~ia~~~IP~Ai~a~ii~~~ 207 (218)
T PF06149_consen 168 AGGVLLIQGTLKE---LGYEVEPLHIALWAIPTAIIAFIIHGI 207 (218)
T ss_pred ccceeeeeeeHHh---cCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665 599999999999999999999887653
No 152
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=58.75 E-value=61 Score=36.07 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHHHHHcCCCchHHH
Q 009002 67 GLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTN-DTSCVVLTEFVLKIARQHNLPPHPFL 145 (547)
Q Consensus 67 ~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN-~~~v~i~~Pi~~~ia~~~~~~p~~~l 145 (547)
+.++|+=.++++.+--.-.+.....+....+++...++ +.+.+++..+. .+++.++. +++.+--+++ ...
T Consensus 142 l~f~sl~l~~~a~~pl~~s~~~~~~i~~l~~~~~~~l~----~g~~lt~l~~SS~A~i~i~~----~l~~~glis~-~~~ 212 (533)
T COG1283 142 LIFLSLELLGQATEPLRQSPAFSDFIAKLSDDPIVALL----IGALLTALIQSSLAAIGILL----SLTSQGLISL-EAA 212 (533)
T ss_pred HHHHHHHHHHHhhhhhhhchhHHHHHHHhccccHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHhCcccch-hHH
Confidence 35556666677776666666666666666655544443 34444443333 34444433 4443333444 667
Q ss_pred HHHHHHHhhhccccccCc
Q 009002 146 LALASSANIGSSATPIGN 163 (547)
Q Consensus 146 ~~~a~aa~~Gg~~TpiG~ 163 (547)
+++.+++|+|+..|++..
T Consensus 213 ~alvLGaNlGt~i~a~la 230 (533)
T COG1283 213 LALVLGANLGTTITAVLA 230 (533)
T ss_pred HHHHHHHhhhchhHHHHH
Confidence 899999999999988663
No 153
>COG3817 Predicted membrane protein [Function unknown]
Probab=57.17 E-value=1.6e+02 Score=29.50 Aligned_cols=117 Identities=11% Similarity=0.093 Sum_probs=65.3
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchh-hHHHHHHHHHHHHHHhhchHHHH------HHH
Q 009002 392 RPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHV-GGIAVLAAVILVLSNLASNVPTV------LLL 464 (547)
Q Consensus 392 ~~~~~~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~-~~~~~l~~v~~~lS~~isN~p~~------~ll 464 (547)
++..+.++|..++==. +-.++.-+...|..|.+++.+......++- -.+..-+.-..++|-++.|-=++ -+-
T Consensus 158 ~rl~d~v~wa~iLPQ~-LaaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMalfTmiMGNaFAAFpViTagIg 236 (313)
T COG3817 158 RRLMDQVSWAAILPQM-LAALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMALFTMIMGNAFAAFPVITAGIG 236 (313)
T ss_pred HHHHHHhhHHHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHcccchhceeeecccc
Confidence 5667889998876321 112334456789999999988766443321 11111122345667777775322 122
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHhhc-ChhhhhhhhhHHHHhcccc
Q 009002 465 GGRVAASAAAISAADEKKAWLILAWVSTVAG-NLSLVGSAANLIVCEQAHR 514 (547)
Q Consensus 465 ~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg-~~TpiGs~aNliv~~~~~~ 514 (547)
+|++.. +.|.||. ..-.+.+.+..|| .+||++.==|.+=...++-
T Consensus 237 vPilv~----q~ganPa-V~~AigM~sGfCGTLlTPMAANFN~vPAALlel 282 (313)
T COG3817 237 VPILVG----QLGANPA-VAGAIGMLSGFCGTLLTPMAANFNIVPAALLEL 282 (313)
T ss_pred cceeee----ccCCChH-HHHHHHHHhhhhhhccChhhhhcCcchHHHhCC
Confidence 342211 3456653 2233445566666 5899998778775555543
No 154
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=57.14 E-value=75 Score=28.86 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHhhcCCchH
Q 009002 404 IFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLA-SNVPTVLLLGGRVAASAAAISAADEKK 482 (547)
Q Consensus 404 l~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~i-sN~p~~~ll~P~ia~~~a~~~~~~~~~ 482 (547)
+++.|+-.+..++++... +.+.+.+....+ ++ +.-+++...+|.++ |.++++.+..+.+. ..-.+. .
T Consensus 1 L~l~gl~~l~~~l~~~~~-~~~~~~l~~~~~-~~----~~~~l~G~~~T~l~QSSsa~~~i~v~l~~-----~g~l~~-~ 68 (142)
T PF02690_consen 1 LFLFGLRLLSSGLKPLAG-PRLRALLARLTS-NP----LLAFLLGALLTALVQSSSAVTLIVVSLVA-----AGVLSL-E 68 (142)
T ss_pred CHhhHHHHHHHHHHHHHH-HHHHHHHHHHcC-CC----HHHHHHHHHHHHHhcchHHHHHHHHHHHH-----hcccCH-H
Confidence 467788888999888755 455555543322 11 12223344444444 56676666666332 112333 4
Q ss_pred HHHHHHHHHHhhcChhhh
Q 009002 483 AWLILAWVSTVAGNLSLV 500 (547)
Q Consensus 483 ~~~~l~~~~~~gg~~Tpi 500 (547)
.-+..++|+++|...|+.
T Consensus 69 ~al~~ilGaNiGtt~~~~ 86 (142)
T PF02690_consen 69 QALAIILGANIGTTITAL 86 (142)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 556788888888876643
No 155
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=54.57 E-value=2.2e+02 Score=27.87 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHccCChHHHHhc-----CChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHHHHH-
Q 009002 37 AGSLLGAMLMVIFQVITPDQAYAA-----IDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRICLI- 109 (547)
Q Consensus 37 ~~al~~~~~l~l~gv~~~~~a~~~-----~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i~~~- 109 (547)
.+.+.+++..-+.+-+++.|.++. .++..+-++.-.+.+...+|+.|+=++-.+.|.+..+ +.-+++....++
T Consensus 22 lVV~vAgivTgLvaG~~~~~iL~~lG~aFv~nR~mslf~l~LPvIGllER~GLke~A~~lI~kik~aT~Gril~~Yl~iR 101 (218)
T PF06149_consen 22 LVVLVAGIVTGLVAGMSFVEILETLGKAFVDNRYMSLFILTLPVIGLLERYGLKERAANLIGKIKGATAGRILSVYLLIR 101 (218)
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334555555556666788887754 3455554555558899999999999999988876544 333444433332
Q ss_pred --HHHHhh-hchhhHHHH--HHHHHHHHHHHHc--CCCchHH--HHHHH-HHHhhhccccccCcccchheee--------
Q 009002 110 --SAISSA-LFTNDTSCV--VLTEFVLKIARQH--NLPPHPF--LLALA-SSANIGSSATPIGNPQNLVIAV-------- 171 (547)
Q Consensus 110 --~~~lS~-flsN~~~v~--i~~Pi~~~ia~~~--~~~p~~~--l~~~a-~aa~~Gg~~TpiG~p~Nliv~~-------- 171 (547)
++.++- =+.-.+-.+ +..|+.-..+++. ++++..- +=+.+ -.=|.|-+. .+|+.+..
T Consensus 102 ~i~aa~gl~~lGGh~QfVRPLi~PMaeaAae~~~g~l~e~~~e~ika~aAA~eN~gnFF-----gqniFva~~gvLLi~g 176 (218)
T PF06149_consen 102 EIAAAFGLTRLGGHAQFVRPLIAPMAEAAAEAKYGELSEKDREKIKAMAAAAENYGNFF-----GQNIFVAAGGVLLIQG 176 (218)
T ss_pred HHHHHhCCcccCCCCccccchhhhHHHHHHhhccCCCCHhHHHHHHHHHHHHHHHHHHH-----hHHHHHhccceeeeee
Confidence 333322 222222222 5667776666543 2333311 11222 222343332 35554432
Q ss_pred ---cCC--CChHHHHHhHHHHHHHHHHHHHHHHH
Q 009002 172 ---QSK--IPFGKFLIGILPAMFVGVAVNALILL 200 (547)
Q Consensus 172 ---~~~--~~f~~f~~~~lp~~iv~~~v~~~~~~ 200 (547)
..| .+-.+...+.+|..++++++.....+
T Consensus 177 tl~~~G~~v~~~~ia~~~IP~Ai~a~ii~~~~~~ 210 (218)
T PF06149_consen 177 TLKELGYEVEPLHIALWAIPTAIIAFIIHGIRLY 210 (218)
T ss_pred eHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234 45678889999999988877655443
No 156
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=51.65 E-value=4.2e+02 Score=30.24 Aligned_cols=112 Identities=16% Similarity=0.293 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcHHHHHHHHHHh----hcCCc-hhHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHHHHcCCCchHHHH
Q 009002 73 MVVSVYLESADMFKYLGRMLSW----KSRGP-KDLLCRICLISAISSALFTNDTSCV-VLTEFVLKIARQHNLPPHPFLL 146 (547)
Q Consensus 73 ~il~~~l~~sG~~~~ia~~i~~----~~~~~-~~ll~~i~~~~~~lS~flsN~~~v~-i~~Pi~~~ia~~~~~~p~~~l~ 146 (547)
+..+.-++++|.-++.-+.... +.++| +.....-.+...+-.+=..|+.++- .-+|.+ ||.|.+|..- =
T Consensus 196 ilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aVv~Sgl~G~isGSsvAN~vttG~fTIPlM----kR~Gy~~~~A-g 270 (642)
T COG4666 196 ILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAVVSSGLMGMISGSSVANTVTTGSFTIPLM----KRAGYPPEFA-G 270 (642)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCcceeeecchhheecchhhhhhhhcceeeHHHH----HhcCCChhcc-c
Confidence 4457778999999998775432 22344 3344444444444434445555554 445554 6788888654 3
Q ss_pred HHHHHHhhhccccc--cCcccchheeecCCCChHHHHHhHHHHHHH
Q 009002 147 ALASSANIGSSATP--IGNPQNLVIAVQSKIPFGKFLIGILPAMFV 190 (547)
Q Consensus 147 ~~a~aa~~Gg~~Tp--iG~p~Nliv~~~~~~~f~~f~~~~lp~~iv 190 (547)
++--+|+.||-+.| .|...-+ ..+.-|+++.|.....+.+.++
T Consensus 271 AvEaaAS~GGQimPPiMGAAAFi-Mae~~gipY~~ii~aA~iPAll 315 (642)
T COG4666 271 AVEAAASTGGQLMPPVMGAAAFI-MAEYLGIPYTEIILAAFIPALL 315 (642)
T ss_pred ceehhhhcCCchhhhhHHHHHHH-HHHHhCCCHHHHHHHHHHHHHH
Confidence 66677777887765 3333222 3366789999999877666544
No 157
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=48.98 E-value=1.6e+02 Score=24.65 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=39.6
Q ss_pred HHHHHHHHHHccCChHHHHhcC------ChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhh
Q 009002 40 LLGAMLMVIFQVITPDQAYAAI------DLPILGLLFGTMVVSVYLESADMFKYLGRMLSWK 95 (547)
Q Consensus 40 l~~~~~l~l~gv~~~~~a~~~~------~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~ 95 (547)
+.++..--+.+-++.+|..+.+ +-++-+..+.+=.++.++.+||+.|++++++.+.
T Consensus 25 liaalvgGl~~Gl~l~~t~~~~~~Gmgg~a~~ALSY~lLGafA~aIs~sGl~~~L~~~i~~~ 86 (88)
T PF13726_consen 25 LIAALVGGLVGGLGLGETMSAFIDGMGGNAETALSYILLGAFAVAISKSGLTDILAKKIIKK 86 (88)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3444444456667777766544 3456666666667888999999999999998765
No 158
>COG3817 Predicted membrane protein [Function unknown]
Probab=46.51 E-value=1.6e+02 Score=29.55 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=79.8
Q ss_pred hcCChhHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHhhhchhhHHHH------HHHHH
Q 009002 59 AAIDLPILG-LLFGTMVVSVYLESADMFKYLGRMLSWKSR--GPKDLLCRICLISAISSALFTNDTSCV------VLTEF 129 (547)
Q Consensus 59 ~~~~~~~i~-~l~~~~il~~~l~~sG~~~~ia~~i~~~~~--~~~~ll~~i~~~~~~lS~flsN~~~v~------i~~Pi 129 (547)
+.++|..++ =+. =.++..+..+|+-|.++..+..... +........|+--+++++.+-|--++. +-.|+
T Consensus 162 d~v~wa~iLPQ~L--aaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMalfTmiMGNaFAAFpViTagIgvPi 239 (313)
T COG3817 162 DQVSWAAILPQML--AALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMALFTMIMGNAFAAFPVITAGIGVPI 239 (313)
T ss_pred HHhhHHHHHHHHH--HHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHcccchhceeeecccccce
Confidence 457786654 111 2356677889999999988775544 344555667777788999999976543 44454
Q ss_pred HHHHHHHcCCCchHHHHHHH-HHHhhhccccccCcccchheeecCCCCh-HHHHHhHHHHHHHHHHHHHHHHHH
Q 009002 130 VLKIARQHNLPPHPFLLALA-SSANIGSSATPIGNPQNLVIAVQSKIPF-GKFLIGILPAMFVGVAVNALILLT 201 (547)
Q Consensus 130 ~~~ia~~~~~~p~~~l~~~a-~aa~~Gg~~TpiG~p~Nliv~~~~~~~f-~~f~~~~lp~~iv~~~v~~~~~~~ 201 (547)
.+ -++|-||.-. -+++ ++.-+|-.+||...--|++=..--+++= .--.|.=.|..++-+++.+..+++
T Consensus 240 lv---~q~ganPaV~-~AigM~sGfCGTLlTPMAANFN~vPAALlel~DknaVIKaQ~ptalvlli~ni~Lmyf 309 (313)
T COG3817 240 LV---GQLGANPAVA-GAIGMLSGFCGTLLTPMAANFNIVPAALLELKDKNAVIKAQAPTALVLLIANIFLMYF 309 (313)
T ss_pred ee---eccCCChHHH-HHHHHHhhhhhhccChhhhhcCcchHHHhCCccccceeeeccchhhHHHHHHHHHHHH
Confidence 32 3567777443 3455 3444777889988766764331111110 112233345555555555544444
No 159
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=46.42 E-value=3.3e+02 Score=28.20 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=45.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHhh
Q 009002 398 VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLA-SNVPTVLLLGGRVAASAAAIS 476 (547)
Q Consensus 398 idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~i-sN~p~~~ll~P~ia~~~a~~~ 476 (547)
+=-..-++|.|+-.+..+++-..-.+.+.+.+.... . ..+...++..++|.++ |..+++.+..+. +.+
T Consensus 132 ~l~G~gllf~gl~~m~~~~~pl~~~~~~~~~~~~l~-~----~~~~~~l~G~~lT~ivQSSsA~i~i~~~l-----a~~- 200 (307)
T TIGR00704 132 SGIGLGLIFLALELISQLVTPLTQANGVQVIFASLT-G----SILLDLLIGAVLTIISHSSSAAVLITATL-----TAA- 200 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhc-c----CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHC-
Confidence 334455566666666666554322233333332211 1 1122233455666665 445555554442 222
Q ss_pred cCCchHHHHHHHHHHHhhcChhhh
Q 009002 477 AADEKKAWLILAWVSTVAGNLSLV 500 (547)
Q Consensus 477 ~~~~~~~~~~l~~~~~~gg~~Tpi 500 (547)
|.-+...-..+++|+++|...|.+
T Consensus 201 G~i~~~~a~~lvlGaNiGT~~ta~ 224 (307)
T TIGR00704 201 GIIGFPVALCLVLGSNLGSGILAM 224 (307)
T ss_pred CCCCHHHHHHHHHhcchhHHHHHH
Confidence 332234556788888888877753
No 160
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=42.94 E-value=2.4e+02 Score=31.49 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=47.9
Q ss_pred cChhHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhh
Q 009002 398 VSYSLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLAS-NVPTVLLLGGRVAASAAAIS 476 (547)
Q Consensus 398 idw~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~is-N~p~~~ll~P~ia~~~a~~~ 476 (547)
+=...-++|.|+=.++.+++-..-.+.+.+.+....+ +.....++.+.++.+++ ..+++.++.- .+.+.
T Consensus 136 ~~~GiGl~f~sl~l~~~a~~pl~~s~~~~~~i~~l~~-----~~~~~l~~g~~lt~l~~SS~A~i~i~~~-----l~~~g 205 (533)
T COG1283 136 VLFGIGLIFLSLELLGQATEPLRQSPAFSDFIAKLSD-----DPIVALLIGALLTALIQSSLAAIGILLS-----LTSQG 205 (533)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCc
Confidence 3344444555555566666665555555555543321 11122234555555544 3444444332 11221
Q ss_pred cCCchHHHHHHHHHHHhhcChhhhh
Q 009002 477 AADEKKAWLILAWVSTVAGNLSLVG 501 (547)
Q Consensus 477 ~~~~~~~~~~l~~~~~~gg~~TpiG 501 (547)
-.+. ..-..++.++++|+-.|++.
T Consensus 206 lis~-~~~~alvLGaNlGt~i~a~l 229 (533)
T COG1283 206 LISL-EAALALVLGANLGTTITAVL 229 (533)
T ss_pred ccch-hHHHHHHHHHhhhchhHHHH
Confidence 2333 45577889999999888765
No 161
>COG0700 SpmB Uncharacterized membrane protein [Function unknown]
Probab=35.66 E-value=2.7e+02 Score=25.78 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCc
Q 009002 401 SLLIFFCGMFITVDGFNKTGIPSALWEFMEPYAEIDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADE 480 (547)
Q Consensus 401 ~~ll~f~glf~l~~al~~tG~~~~ia~~l~~~~~~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~ 480 (547)
+++-.+.++|+...+++.||..|++.+.+.+....-..++-.+-.++.-.+ |-..+.- +.....++.|.|.
T Consensus 33 ~i~P~lv~~lv~i~~fr~sGald~v~~~l~pv~s~~G~p~Ea~pv~l~~p~----Sg~gA~G-----v~~dl~~~~g~ds 103 (162)
T COG0700 33 TILPYLVAMLVIIAAFRISGALDWVGHILSPVMSLIGLPGEAAPVALAKPM----SGGGAVG-----VAADLATTYGLDS 103 (162)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHcCCChhhhHHHHHhhc----cCccHHH-----HHHHHHHhcCCcc
Q ss_pred hHHHHHHHHHHHhhcChhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhhcC
Q 009002 481 KKAWLILAWVSTVAGNLSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPLIR 547 (547)
Q Consensus 481 ~~~~~~l~~~~~~gg~~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~i~ 547 (547)
...-....+. .++-...|-..+-..+-|.| +.+++++.|+-..++..+.++++.+
T Consensus 104 ~~~~vaa~~~-----------gstettfyvl~vyfG~vgik-~~~~al~~~l~advig~i~ai~V~~ 158 (162)
T COG0700 104 FIGTVAAPAQ-----------GSTETTFYVLGVYFGAVGIK-KIRKALPVGLTADVIGAIAAIWVMQ 158 (162)
T ss_pred hhHHHHHHHh-----------cccCCeEEEEEEEEehhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
No 162
>PRK10519 hypothetical protein; Provisional
Probab=29.61 E-value=3.9e+02 Score=24.66 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC--C-chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCC
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR--G-PKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLP 140 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~--~-~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~ 140 (547)
+.+=.++.++++.+.++++|+.|++++.+....+ + |... ...+++.+++-++.+.++. ++-++-.++
T Consensus 25 ~iiP~li~~~v~I~iL~~sG~ld~l~~~l~Pvm~llGLPgea------~~vll~g~ls~~~a~~vl~----~L~~~G~LT 94 (151)
T PRK10519 25 NLLPNVLMAFVIIQALNITGLLDLVGHIFGPVMALFGLPGEA------ATVLLAAWMSMGGAVGVAA----SLFTAGALT 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHhHHHHHHHHH----HHHHcCCCC
Confidence 5777889999999999999999999998764332 2 2211 1222333444455555554 444444555
Q ss_pred chH
Q 009002 141 PHP 143 (547)
Q Consensus 141 p~~ 143 (547)
+..
T Consensus 95 ~~Q 97 (151)
T PRK10519 95 GHH 97 (151)
T ss_pred HHH
Confidence 544
No 163
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=29.34 E-value=9.6e+02 Score=30.09 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Q 009002 84 MFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVL 131 (547)
Q Consensus 84 ~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~ 131 (547)
++|++-+.+. ..+ +..-...-..--.+-+.+.+|.+|++.++|+.+
T Consensus 981 IfERIREELr-~Gk-sl~eAI~~G~~~afs~ILdTnLTTLIA~lPLf~ 1026 (1403)
T PRK12911 981 VFERIREEYL-LSR-SLSESVEAGYKKAFSAIFDSNLTTILASALLLM 1026 (1403)
T ss_pred EehHHHHHHH-cCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677766652 222 323333334455667778889999999999853
No 164
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=26.56 E-value=3.8e+02 Score=22.41 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHhhh
Q 009002 403 LIFFCGMFITVDGFNKTGIPSALWEFMEP 431 (547)
Q Consensus 403 ll~f~glf~l~~al~~tG~~~~ia~~l~~ 431 (547)
-+--+.+=.+..++.+||+.+++++.+.+
T Consensus 57 ALSY~lLGafA~aIs~sGl~~~L~~~i~~ 85 (88)
T PF13726_consen 57 ALSYILLGAFAVAISKSGLTDILAKKIIK 85 (88)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 33334445567789999999999998754
No 165
>COG2031 AtoE Short chain fatty acids transporter [Lipid metabolism]
Probab=26.46 E-value=4.3e+02 Score=28.54 Aligned_cols=136 Identities=22% Similarity=0.268 Sum_probs=75.1
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHh
Q 009002 74 VVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSAN 153 (547)
Q Consensus 74 il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~ 153 (547)
+-+.++..++.++++=+.+.+.-++++...+...+++. ..+++|=---.++-.=....++++.+-.-.|++++.+|..-
T Consensus 69 vtG~alAssp~~~k~l~~lA~lpk~~~qa~~lv~~v~~-ia~~inWGlgLvvgaifakeia~~~~gvdy~l~iA~aY~gf 147 (446)
T COG2031 69 VTGYALASSPLVKKLLKTLASLPKTPKQAVVLVAFVSS-IASWINWGLGLVVGAIFAKEIARRVKGVDYRLLIAAAYSGF 147 (446)
T ss_pred hcchhhhcChhHHHHHHHHhcCCCCCceeEeHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 44678899999999998888777777776655544443 33455444334444445778888765334466666666543
Q ss_pred h-------hccccccCcccchheee----cC-CCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 009002 154 I-------GSSATPIGNPQNLVIAV----QS-KIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNSHKD 212 (547)
Q Consensus 154 ~-------Gg~~TpiG~p~Nliv~~----~~-~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~ 212 (547)
+ ||.-..+.||-|-+... .+ -+++.|=.....+ ++.++..+....++++..-|++++
T Consensus 148 l~w~~GlSgS~pLl~atp~~~l~~~~~~~~~~~IP~seTiF~~~~--~i~~~~l~i~~p~~~~~~~p~~~e 216 (446)
T COG2031 148 LTWHGGLSGSAPLLIATPGNSLADVFAEVVGEVIPLSETIFSPYN--IIILLALIIVLPLIYYMMAPSKGE 216 (446)
T ss_pred HHHhcCccccchHhhcCCCCchhHHHHHhcCCccccchhhcccch--HHHHHHHHHHHHHHHHHhCCCccc
Confidence 2 33334455664433321 11 2455544333222 222222223345566777787654
No 166
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=25.76 E-value=7e+02 Score=27.47 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=79.9
Q ss_pred HHHHHHhcHHHHHHHHHHh---hcC-CchhHHHHHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 009002 76 SVYLESADMFKYLGRMLSW---KSR-GPKDLLCRICLISAISSALFTNDTS-CVVLTEFVLKIARQHNLPPHPFLLALAS 150 (547)
Q Consensus 76 ~~~l~~sG~~~~ia~~i~~---~~~-~~~~ll~~i~~~~~~lS~flsN~~~-v~i~~Pi~~~ia~~~~~~p~~~l~~~a~ 150 (547)
.+.+..|++-.++|-+=.+ ..+ +...+++.+.++++++-.|+..-.+ =.++.||.+.+--..|.+|.--=.
T Consensus 364 va~FnwSn~G~~~AV~GA~~L~~~gl~g~~lil~~illsa~inL~IgSASAkWailaPIfVPMlMllGysPe~tQa---- 439 (516)
T COG2978 364 VAFFNWSNLGTIMAVKGADFLKAIGLTGLPLILGFILLSAFINLFIGSASAKWAILAPIFVPMLMLLGYSPEFTQA---- 439 (516)
T ss_pred HHHhcccccchhheechHhHHHHcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhcCCHHHHHH----
Confidence 3456788888888754332 222 3356677777788888777766544 458899999988899999854221
Q ss_pred HHhhhccccccCcccchhee------ec--CCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 009002 151 SANIGSSATPIGNPQNLVIA------VQ--SKIPFGKFLIGILPAMFVGVAVNALILLTMYWKLLNS 209 (547)
Q Consensus 151 aa~~Gg~~TpiG~p~Nliv~------~~--~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~lLp~ 209 (547)
+=-+|...|-+=+|-+-+.- +. ...+.+.+...++|..+.-+++-..+++.++.--+|-
T Consensus 440 ayRigDS~tniiTPlm~yfpLil~~~~kY~k~~GvGTL~s~mLPYsi~f~i~w~~l~~iw~~lglPl 506 (516)
T COG2978 440 AYRIGDSVTNIITPLMPYFPLILAYAQKYDKDAGVGTLMSMMLPYSIAFLIAWTLLLLIWFLLGLPL 506 (516)
T ss_pred HHHhcccccccccchhhhHHHHHHHHHHhCcCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11245555655566543221 22 2467789999999998766555443333333334443
No 167
>PRK04972 putative transporter; Provisional
Probab=23.98 E-value=1.1e+02 Score=34.39 Aligned_cols=40 Identities=5% Similarity=-0.149 Sum_probs=29.0
Q ss_pred CCcc--hhhhhhcccccccccCCcccccCCC---CCcccccchhh
Q 009002 288 SGTF--ESARITNESKEVSTDGGSQRREETV---PSRGIGSVITL 327 (547)
Q Consensus 288 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~gd~l 327 (547)
+|++ ||++|.++++++..+.+++|.+.+. .+..++.||++
T Consensus 311 ~s~liGkTL~eL~~r~~gv~Vl~I~R~g~~~~~~~~~~L~~GD~L 355 (558)
T PRK04972 311 NHNAVGKRLSQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVL 355 (558)
T ss_pred CcccCCCCHHHhCCccCCeEEEEEecCCcccCCCCCCEecCCCEE
Confidence 4444 8999999976666778888855442 34457999988
No 168
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=23.45 E-value=3.8e+02 Score=23.21 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=22.0
Q ss_pred hcChhHHHHHHHHHHHHHHHHHhCHHHHHHHHh
Q 009002 397 KVSYSLLIFFCGMFITVDGFNKTGIPSALWEFM 429 (547)
Q Consensus 397 ~idw~~ll~f~glf~l~~al~~tG~~~~ia~~l 429 (547)
+..+....++.+.+.+..++.- +..+++|+.+
T Consensus 29 ~~~~~l~Wl~~~i~~l~~~ifP-~~~~~vA~~l 60 (115)
T PF10066_consen 29 RLKYSLLWLVFSIILLILSIFP-NILDWVAKLL 60 (115)
T ss_pred cHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHH
Confidence 3556667777777777777665 5677888876
No 169
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=23.36 E-value=1.6e+02 Score=30.11 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcCCchhHHHHHHHH-HHHHhhhchhhHHHHHHHHHHHHHHHHc-CCCc
Q 009002 64 PILGLLFGTMVVSVYLESADMFKYLGRMLSWKSRGPKDLLCRICLI-SAISSALFTNDTSCVVLTEFVLKIARQH-NLPP 141 (547)
Q Consensus 64 ~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~~~~~ll~~i~~~-~~~lS~flsN~~~v~i~~Pi~~~ia~~~-~~~p 141 (547)
+.+=|.+-.-.+-..+..||+-||+|+.+....++++.++.+-.+. --++|.|+---++..=.+-..+..--.. +++|
T Consensus 188 tIlPFMAFVs~LIGiI~~sGiGd~iA~~l~PLAg~~~GLv~l~~ICs~PfLSP~LGPGAVIaQVIGvLiGvqIg~G~Ipp 267 (331)
T TIGR00825 188 TILPFMAFVSALIGIIMASGLGDWIAHGLVPLAGNPIGLVILALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGKGTIPP 267 (331)
T ss_pred HhhHHHHHHHHHHHHHhcccHHHHHHhhccccccChHHHHHHHHHHcchhcccccCCceehhhhhhhheeheecCCCCCh
Confidence 3443444444556677899999999999998888887665432222 2357888887776653333332221112 3444
Q ss_pred hHHHHHHHHHHhh--hccccccC
Q 009002 142 HPFLLALASSANI--GSSATPIG 162 (547)
Q Consensus 142 ~~~l~~~a~aa~~--Gg~~TpiG 162 (547)
.+.+|--||-|. |+=.-|+|
T Consensus 268 -~lALPALFAIN~Q~~cDFIPVG 289 (331)
T TIGR00825 268 -HLALPALFAINAQAACDFIPVG 289 (331)
T ss_pred -hhhhhHHHhhcccccCceeccc
Confidence 555676676663 33344554
No 170
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=21.90 E-value=6.4e+02 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=16.1
Q ss_pred HHHHHHhhhchhhHHHHHHH
Q 009002 108 LISAISSALFTNDTSCVVLT 127 (547)
Q Consensus 108 ~~~~~lS~flsN~~~v~i~~ 127 (547)
.+++++..+.|.|++++.|.
T Consensus 24 ~ltg~~GGlvSSTA~t~~la 43 (211)
T PF13194_consen 24 LLTGLLGGLVSSTATTVSLA 43 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999887663
Done!