Your job contains 1 sequence.
>009003
MAASSPLLTSEHSKKTKPNRRKRTRKGGEAEKLDSLKWNHSFSAEDNDPFAFLVGSNELD
GGFLSLEEIDEASYNLQIPKPEKGKPGKKLNSKKRKRSSANEEDSGDGDGDGDEDGSGVQ
KQEEKNLKNETGKKKKKKKKGKKIKTVEESVAVSNGPDDAEEELVNEAEISTEFDAWNEL
RLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLE
EREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVG
GMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR
ELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS
LKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYI
LSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP
KGDRGKD
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009003
(547 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086775 - symbol:AT3G16840 species:3702 "Arabi... 1384 3.5e-152 2
DICTYBASE|DDB_G0281841 - symbol:ddx24 "DEAD/DEAH box heli... 341 4.1e-69 4
ASPGD|ASPL0000042587 - symbol:AN1750 species:162425 "Emer... 611 1.3e-59 1
UNIPROTKB|A6H7B6 - symbol:DDX24 "DDX24 protein" species:9... 320 8.9e-58 3
MGI|MGI:1351337 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) bo... 318 3.2e-56 3
WB|WBGene00018890 - symbol:F55F8.2 species:6239 "Caenorha... 413 3.4e-55 2
RGD|727929 - symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box pol... 309 9.1e-55 3
CGD|CAL0005900 - symbol:MAK5 species:5476 "Candida albica... 539 8.6e-52 1
UNIPROTKB|F1NJ62 - symbol:F1NJ62 "Uncharacterized protein... 292 1.6e-49 3
SGD|S000000346 - symbol:MAK5 "Essential nucleolar protein... 479 4.9e-47 2
UNIPROTKB|F1SCG7 - symbol:LOC100620190 "Uncharacterized p... 319 1.9e-46 2
UNIPROTKB|I3LKU6 - symbol:LOC100620190 "Uncharacterized p... 236 2.7e-38 2
UNIPROTKB|G3V529 - symbol:DDX24 "ATP-dependent RNA helica... 324 1.3e-37 2
UNIPROTKB|Q9GZR7 - symbol:DDX24 "ATP-dependent RNA helica... 324 1.6e-37 2
UNIPROTKB|E2RIC4 - symbol:DDX24 "Uncharacterized protein"... 317 2.2e-36 2
FB|FBgn0034496 - symbol:CG9143 species:7227 "Drosophila m... 372 5.3e-35 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 308 1.8e-34 3
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 308 1.8e-34 3
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 302 1.1e-33 3
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 305 9.0e-33 3
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 305 9.0e-33 3
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 348 1.7e-32 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 316 2.3e-32 2
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh... 204 2.4e-30 4
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 340 2.7e-30 2
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 208 3.2e-30 4
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 176 3.3e-30 3
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 222 6.1e-30 4
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 340 7.7e-30 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 340 7.7e-30 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 340 7.7e-30 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 340 7.7e-30 2
POMBASE|SPBC4F6.07c - symbol:SPBC4F6.07c "ATP-dependent R... 241 9.3e-30 3
ASPGD|ASPL0000051195 - symbol:AN1634 species:162425 "Emer... 343 1.3e-29 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 204 1.6e-29 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 204 1.6e-29 3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 173 1.9e-29 3
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 182 4.0e-29 3
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 183 4.7e-29 3
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 310 5.8e-29 3
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 180 1.1e-28 3
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 297 1.8e-28 3
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 297 1.8e-28 3
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 178 1.9e-28 3
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 320 3.3e-28 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 180 4.7e-28 3
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 299 1.4e-27 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 173 2.5e-27 3
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 180 2.5e-27 3
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 179 3.7e-27 3
UNIPROTKB|F5GYL3 - symbol:DDX24 "ATP-dependent RNA helica... 324 5.0e-27 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 204 5.4e-27 4
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 204 5.7e-27 4
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 204 5.7e-27 4
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 204 5.7e-27 4
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 204 5.7e-27 4
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 204 5.7e-27 4
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 204 6.1e-27 4
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 190 6.4e-27 4
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 180 8.5e-27 3
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 300 1.0e-26 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 300 1.0e-26 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 286 1.1e-26 3
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 219 1.2e-26 3
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 285 1.2e-26 2
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 323 1.5e-26 1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 182 1.7e-26 3
CGD|CAL0004058 - symbol:DBP8 species:5476 "Candida albica... 212 2.3e-26 3
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 210 3.0e-26 3
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 195 3.1e-26 3
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe... 180 3.1e-26 4
SGD|S000001212 - symbol:DBP8 "ATPase, putative RNA helica... 178 4.8e-26 4
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 318 4.9e-26 1
ZFIN|ZDB-GENE-021220-2 - symbol:ddx54 "DEAD (Asp-Glu-Ala-... 202 7.9e-26 4
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 305 8.0e-26 4
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 305 8.0e-26 4
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 305 8.0e-26 4
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 305 8.0e-26 4
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 305 8.0e-26 4
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 319 8.6e-26 1
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 319 8.6e-26 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 174 9.7e-26 4
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 305 1.0e-25 4
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 293 1.3e-25 2
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 305 1.3e-25 4
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 304 1.5e-25 1
UNIPROTKB|Q8EIE5 - symbol:dbpA "ATP-dependent RNA helicas... 185 1.9e-25 4
TIGR_CMR|SO_0897 - symbol:SO_0897 "ATP-dependent RNA heli... 185 1.9e-25 4
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 173 4.3e-25 3
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer... 173 5.7e-25 4
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 222 7.0e-25 2
UNIPROTKB|Q8EHT1 - symbol:SO_1136 "ATP-dependent RNA heli... 290 7.5e-25 2
TIGR_CMR|SO_1136 - symbol:SO_1136 "ATP-dependent RNA heli... 290 7.5e-25 2
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 173 1.1e-24 3
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 193 1.1e-24 4
CGD|CAL0001091 - symbol:orf19.672 species:5476 "Candida a... 304 1.3e-24 1
UNIPROTKB|Q59W52 - symbol:PRP28 "Pre-mRNA-splicing ATP-de... 304 1.3e-24 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 195 1.5e-24 2
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 301 2.0e-24 3
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 168 2.2e-24 3
WARNING: Descriptions of 740 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 1384 (492.3 bits), Expect = 3.5e-152, Sum P(2) = 3.5e-152
Identities = 274/377 (72%), Positives = 320/377 (84%)
Query: 152 AVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAH 211
AVS DD EE V E EI EF AW+ +RLHPLLMKSIYRL FKEPT IQKAC AA+
Sbjct: 167 AVSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAY 226
Query: 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271
QGKDVIGAAETGSGKTLAFGLPI+QRLL+EREK K+ KGEEA+KYA G+LRALIIT
Sbjct: 227 QGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIIT 286
Query: 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331
PTRELALQVT+HL+ AK ++V+VVPIVGGM +EKQER LK +PE+VV TPGRLWELMS
Sbjct: 287 PTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSA 346
Query: 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSS 391
GEKHLVELH+LSFFVLDEADRM+E GHFRELQSI+D+LP+T+ N+G+++ ++ TV +
Sbjct: 347 GEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLN 406
Query: 392 LQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNG-LNSIETLSERAGMRANVAIVD 450
+ +KKRQT VFSATIALS+DFRKKLK GS KSKQS +G +NSIE LSERAGMR NVAI+D
Sbjct: 407 VPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIID 466
Query: 451 LTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILG 510
LT +LA K+EESFI+C+E++KDAYLYYILSVHGQGRTIVFCTS+ LRHIS LLKILG
Sbjct: 467 LTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILG 526
Query: 511 IDVWTLHAQMQQRARLK 527
+DV TL ++M+QRARLK
Sbjct: 527 LDVCTLFSEMKQRARLK 543
Score = 122 (48.0 bits), Expect = 3.5e-152, Sum P(2) = 3.5e-152
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 31 EKLDSLKWNHSFS-AEDNDPFAFLV---GSNELDGGFLSLEEIDEASYNLQI 78
E++DSL W+ S ED++ +F GS +LDGGFLSLEEIDEA Y+L +
Sbjct: 28 ERIDSLPWSSSIPIGEDDEGESFSTLFSGSGQLDGGFLSLEEIDEADYHLTL 79
>DICTYBASE|DDB_G0281841 [details] [associations]
symbol:ddx24 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281841 GO:GO:0005524 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_640452.1 ProteinModelPortal:Q54TD7
EnsemblProtists:DDB0234200 GeneID:8623265 KEGG:ddi:DDB_G0281841
KO:K14805 OMA:NIDHVAH Uniprot:Q54TD7
Length = 940
Score = 341 (125.1 bits), Expect = 4.1e-69, Sum P(4) = 4.1e-69
Identities = 65/124 (52%), Positives = 94/124 (75%)
Query: 250 EDKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ 307
E++ EE E+ K + L +L+I PTRELA+QVT+H+K + N++V+ IVGGM++++Q
Sbjct: 388 EEEEEEEEEGRSKEYRKLFSLVICPTRELAIQVTNHIKSIISHTNLKVISIVGGMASQRQ 447
Query: 308 ERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIID 367
+R+L RPE+VV TPGRLWEL++ G +HLVEL +L +DEADRM+E GHF EL+SI+
Sbjct: 448 QRVLSKRPEIVVATPGRLWELITEGHQHLVELESLLCLGIDEADRMVEQGHFAELESILK 507
Query: 368 MLPM 371
LP+
Sbjct: 508 TLPI 511
Score = 215 (80.7 bits), Expect = 4.1e-69, Sum P(4) = 4.1e-69
Identities = 41/99 (41%), Positives = 64/99 (64%)
Query: 160 AEEELVN-EAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIG 218
+E++ ++ E + + WN L PL++K + L F +PT IQ + IP A G DVIG
Sbjct: 278 SEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVIPVAVSSGYDVIG 337
Query: 219 AAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAE 257
AA+TGSGKTLAFG+P++QR+L+ K + +E+K + +
Sbjct: 338 AAQTGSGKTLAFGIPMVQRILQHLRKHGQNVENKANKQQ 376
Score = 206 (77.6 bits), Expect = 4.1e-69, Sum P(4) = 4.1e-69
Identities = 62/183 (33%), Positives = 92/183 (50%)
Query: 349 EADRMIENGHF--RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
+ D++ + G + + D +P Q EQ N +T + KRQT VFSAT+
Sbjct: 536 KVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQ--NHLTTTH----KRQTFVFSATL 589
Query: 407 A-LSADFRKKLKHGSLKS-KQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEES 464
+ D G+ S K+ L IE L E+ + + ++D+T + A L E+
Sbjct: 590 VNIPGD-------GAPTSQKKKYRKLTPIENLIEKVRFQRDYKLIDVTQKRLTAKNLLET 642
Query: 465 FIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRA 524
I C E+KD YLYY + + GRT+VF SI R + + IL + V+ LHAQMQQ+
Sbjct: 643 KIFCNLEEKDMYLYYFVERY-PGRTLVFVNSIDCARRLIPIFNILEVPVFALHAQMQQKQ 701
Query: 525 RLK 527
RLK
Sbjct: 702 RLK 704
Score = 51 (23.0 bits), Expect = 4.1e-69, Sum P(4) = 4.1e-69
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 61 GGFLSLEEIDEASYNL 76
GGFL LEEID Y L
Sbjct: 26 GGFLGLEEIDPNDYFL 41
Score = 37 (18.1 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 156 GPDDAEEELVNEAEISTEFDAWNELRLHPLLMK 188
G DD++ E + S + D ++ + P ++K
Sbjct: 99 GNDDSDNEYSGYQDDSDQDDEYSAAKKKPRIIK 131
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 144/370 (38%), Positives = 215/370 (58%)
Query: 164 LVNEAEIS-TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAET 222
L +EA+ + AW L L P + S+ +L+F PT +QK+CIP G DVIG A T
Sbjct: 185 LEDEADDDGADISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPIL-DGHDVIGKAST 243
Query: 223 GSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTD 282
GSGKTLAFGLPI++ LE RE+ + D EE EK P ALI++PTRELA Q+
Sbjct: 244 GSGKTLAFGLPILEHYLE-RERRKTI--DSEEEKEKI-PI----ALILSPTRELAHQLQK 295
Query: 283 HLKGV---AKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVEL 339
H+ G+ A G+N R + GG+S +KQ+RLL+ ++V+GTPGR+WE++ G+ + +
Sbjct: 296 HIYGLISNAPGVNARTALLTGGLSVQKQQRLLETA-DIVIGTPGRVWEVLRTGQGLIRRM 354
Query: 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQT 399
+ F V+DEADR++ GHF+E++ I+ L G ++ + + + +RQT
Sbjct: 355 QGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDG--GPPDEEDDSSEENVVPGVERQT 412
Query: 400 LVFSATIALSADFRKKLK-HGSLKSKQSVNGLNSIETLSERAGMRANVA-IVDLTNMCVL 457
LVFSAT D ++KL G +N S+E L ++ R +D+ + +
Sbjct: 413 LVFSATF--HRDLQQKLAGKGKWTGGDIMNKKESMEYLLQKLNFREEKPKFIDVNPVSQM 470
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
A L+E +EC +KD YLY +L H + RT+VF SI+A+R I+ LL+ L + LH
Sbjct: 471 AEGLKEGIVECPAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRITQLLQTLQLPALALH 530
Query: 518 AQMQQRARLK 527
+ M Q+ARL+
Sbjct: 531 SSMAQKARLR 540
>UNIPROTKB|A6H7B6 [details] [associations]
symbol:DDX24 "DDX24 protein" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:DAAA02053048
EMBL:BC146184 IPI:IPI00687716 RefSeq:NP_001092515.1 UniGene:Bt.9433
Ensembl:ENSBTAT00000004441 GeneID:529613 KEGG:bta:529613
InParanoid:A6H7B6 NextBio:20875064 Uniprot:A6H7B6
Length = 852
Score = 320 (117.7 bits), Expect = 8.9e-58, Sum P(3) = 8.9e-58
Identities = 63/140 (45%), Positives = 91/140 (65%)
Query: 241 EREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVG 300
+ E+A K+ ++ G PK L L++TPTRELA+QV H+ VAK +++ +VG
Sbjct: 361 DEEQAGKLKQELG--GSTVPPKRPLLGLVLTPTRELAVQVKQHVDAVAKFTSIKTAILVG 418
Query: 301 GMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR 360
GMST+KQ+R+L +PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 419 GMSTQKQQRMLNRQPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFA 478
Query: 361 ELQSIIDMLPMTNGSNKGQS 380
EL +++ML + + K Q+
Sbjct: 479 ELSQLLEMLSDSQYNPKRQT 498
Score = 237 (88.5 bits), Expect = 8.9e-58, Sum P(3) = 8.9e-58
Identities = 59/157 (37%), Positives = 87/157 (55%)
Query: 377 KGQ-SEQTQNCVTVSSLQ-RKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIE 434
KG +E +Q +S Q KRQTLVFSAT+ L ++ H K + ++ ++
Sbjct: 474 KGHFAELSQLLEMLSDSQYNPKRQTLVFSATLTLVHQAPARILHK--KHAKKMDKTAKLD 531
Query: 435 TLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCT 494
L ++ GMR ++DLT L E+ I C+ ++KD YLYY L + GRT+VF
Sbjct: 532 LLMQKIGMRGKPKVIDLTRKEATVETLTETKIHCETDEKDLYLYYFLMQY-PGRTLVFAN 590
Query: 495 SIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
SI+ ++ +S LLK+L I TLHA M Q+ RL+ Q
Sbjct: 591 SISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQ 627
Score = 141 (54.7 bits), Expect = 8.9e-58, Sum P(3) = 8.9e-58
Identities = 31/99 (31%), Positives = 54/99 (54%)
Query: 157 PDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
P A+ + + + AW +L + +++++ L F PTPIQ + A D+
Sbjct: 173 PKKAKTWMPEMHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 232
Query: 217 IGAAETGSGKTLAFGLPIMQRLL--EEREKAAKMLEDKG 253
+GAAETGSGKTLAF +P++ +L + ++K + + G
Sbjct: 233 LGAAETGSGKTLAFAIPMIDAVLRWQVKKKPTPAISNTG 271
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 318 (117.0 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 65/145 (44%), Positives = 90/145 (62%)
Query: 241 EREKAAKMLEDKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPI 298
+ E+A K+ ++ ++ Y P+ L L++TPTRELA+QV H+ VAK + +
Sbjct: 362 DAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAIL 421
Query: 299 VGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 358
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 422 VGGMSTQKQQRMLNRHPEIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGH 481
Query: 359 FRELQSIIDMLPMTNGSNKGQSEQT 383
F EL +++ML N S S QT
Sbjct: 482 FAELSQLLEML---NDSQYNPSRQT 503
Score = 223 (83.6 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 50/135 (37%), Positives = 78/135 (57%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCV 456
RQTLVFSAT+ L ++ H K + ++ + ++ L ++ GMR ++DLT
Sbjct: 501 RQTLVFSATLTLVHQAPARILHK--KHVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRNEG 558
Query: 457 LANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTL 516
L E+ I C+ ++KD YLYY L + GR++VF SI+ ++ +S LLK+L + TL
Sbjct: 559 TVETLTETKIHCETDEKDLYLYYFLMQY-PGRSLVFANSISCIKRLSGLLKVLDVMPLTL 617
Query: 517 HAQMQQRARLKLFSQ 531
HA M Q+ RL+ Q
Sbjct: 618 HACMHQKQRLRNLEQ 632
Score = 143 (55.4 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGL 232
+ AW +L + +++++ L F PTPIQ + A D++GAAETGSGKTLAF +
Sbjct: 191 DVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 250
Query: 233 PIMQRLLE-EREKAAKMLEDKG 253
P++ +L+ + KA + G
Sbjct: 251 PMIHSVLQWHKMKAPPIPRSTG 272
Score = 38 (18.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 362 LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQ 393
L ++D++P+T + Q ++ +N + LQ
Sbjct: 606 LLKVLDVMPLTLHACMHQKQRLRNLEQFARLQ 637
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 413 (150.4 bits), Expect = 3.4e-55, Sum P(2) = 3.4e-55
Identities = 96/248 (38%), Positives = 140/248 (56%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPL-LMKSIYRLQFKEPTPIQKACIPAAAHQG 213
NG ++ EA T+ AW + P ++++I ++ F EPT IQ A +PAA
Sbjct: 134 NGDTGKPKKSKKEASKKTDISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDR 193
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273
+DV+GAAETGSGKTLAFG+P++ RLLE D +E E +G RALI+ PT
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARLLES--------SDDSQETESTEVRGP-RALIVAPT 244
Query: 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL-KARPEVVVGTPGRLWELMSGG 332
REL +Q+ H+ + + IVGG++ KQER++ + RP++VV TPGRLW +M
Sbjct: 245 RELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEA 304
Query: 333 E--KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVS 390
E + L E L V+DE DRM+E G+F EL I++ + + + E+ Q V +
Sbjct: 305 ETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKI-----HEESEKEKLQTLVFSA 359
Query: 391 SLQRKKRQ 398
+L K Q
Sbjct: 360 TLTFAKAQ 367
Score = 188 (71.2 bits), Expect = 3.4e-55, Sum P(2) = 3.4e-55
Identities = 53/137 (38%), Positives = 78/137 (56%)
Query: 393 QRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANV-AIVDL 451
+++K QTLVFSAT+ A + + K+K+ ++ I+ L + G+R N ++DL
Sbjct: 348 EKEKLQTLVFSATLTF-AKAQDVAEEEKKKAKE-LSSQQKIQRLIKLTGLRENKHKVIDL 405
Query: 452 TNMCVLANKLEESFIECKEE-DKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILG 510
T A L E+ I C +KD L Y+L+ + GRTIVF SI A R + S+LK +
Sbjct: 406 TRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRY-PGRTIVFVNSIDAARRLYSVLKSVN 464
Query: 511 IDVWTLHAQMQQRARLK 527
ID LHA+M Q+ RLK
Sbjct: 465 IDPMILHAKMIQKQRLK 481
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 309 (113.8 bits), Expect = 9.1e-55, Sum P(3) = 9.1e-55
Identities = 63/145 (43%), Positives = 89/145 (61%)
Query: 241 EREKAAKMLEDKGEEAEKYA--PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPI 298
+ E+A K+ ++ ++ Y P+ L L++TPTRELA+QV H+ VAK + +
Sbjct: 356 DEEQAGKLKQELCDQIAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAIL 415
Query: 299 VGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 358
VGGMST+KQ+R+L PE+V+ TPGRLWEL+ HL L L V+DEADRM+E H
Sbjct: 416 VGGMSTQKQQRMLNRHPEIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDH 475
Query: 359 FRELQSIIDMLPMTNGSNKGQSEQT 383
F EL +++ML N S + QT
Sbjct: 476 FAELSQLLEML---NDSQYNPNRQT 497
Score = 220 (82.5 bits), Expect = 9.1e-55, Sum P(3) = 9.1e-55
Identities = 51/135 (37%), Positives = 77/135 (57%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCV 456
RQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 495 RQTLVFSATLTLVHQAPARILHK--KHVKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEG 552
Query: 457 LANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTL 516
L E+ I C+ ++KD YLYY L + GR++VF SI+ ++ +S LLK+L I TL
Sbjct: 553 TVETLTETKIHCETDEKDLYLYYFLMQY-PGRSLVFANSISCIKRLSGLLKVLDIMPLTL 611
Query: 517 HAQMQQRARLKLFSQ 531
HA M Q+ RL+ Q
Sbjct: 612 HACMHQKQRLRNLEQ 626
Score = 145 (56.1 bits), Expect = 9.1e-55, Sum P(3) = 9.1e-55
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 157 PDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
P A+ + + + AW +L + +++++ L F PTPIQ + A D+
Sbjct: 174 PKKAKTWMPEVQDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 233
Query: 217 IGAAETGSGKTLAFGLPIMQRLLE-EREKAAKMLEDKG 253
+GAAETGSGKTLAF +P++ +L+ + KA + G
Sbjct: 234 LGAAETGSGKTLAFAIPMIHSVLQWHKMKAPPIPSSAG 271
Score = 37 (18.1 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 240 EEREKAAKMLEDKGEEAEKYAPKGHLR 266
++R+ A E++ EE E +PK ++
Sbjct: 72 KKRKAQAVSEEEEEEEGESSSPKKKIK 98
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 539 (194.8 bits), Expect = 8.6e-52, P = 8.6e-52
Identities = 133/377 (35%), Positives = 215/377 (57%)
Query: 157 PDDAEEELVN--EAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGK 214
PDD E L N E ++ + A+ + + +L FK+PTPIQK IP A GK
Sbjct: 185 PDDNEINLPNWQEGDLGSSISAYT--------LYGLSQLDFKKPTPIQKETIPIAL-SGK 235
Query: 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274
DVIG A TGSGKTLA+G+PI+++ ++ + +++ ++ + P G +I PTR
Sbjct: 236 DVIGKATTGSGKTLAYGIPILEKYIQ----SLNLIKQNNKDKKINHPTG----IIFAPTR 287
Query: 275 ELALQVTDHLKGVAK--GINVR-VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331
ELA QV DHL +AK ++ R +V I GG+S +KQ+RLL+ P ++V TPGR+ EL+ G
Sbjct: 288 ELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELVQG 347
Query: 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSS 391
+ L ++ VLDEADR++++GHF E + I+++ G N+ +S+ +
Sbjct: 348 DSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELF----GKNRPKSKSIE------- 396
Query: 392 LQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMR-ANVAIVD 450
K QTLVFSAT + FRK +H KS + ++ L+E+ + +VD
Sbjct: 397 ---WKWQTLVFSATFSRDL-FRKLDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVD 452
Query: 451 LTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILG 510
+++ ++ E+ +EC ++D YLYY L ++ +G T+VF SI +++ + LL L
Sbjct: 453 ANPKEIVSGQITEALVECGPTERDLYLYYFLLMY-KGSTLVFANSIDSVKRLVPLLNNLN 511
Query: 511 IDVWTLHAQMQQRARLK 527
I +++H+ M Q+ RL+
Sbjct: 512 IPAFSIHSSMIQKQRLR 528
>UNIPROTKB|F1NJ62 [details] [associations]
symbol:F1NJ62 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074847 EMBL:AADN02003663 EMBL:AADN02003664
EMBL:AADN02003665 EMBL:AADN02034739 IPI:IPI00571504
Ensembl:ENSGALT00000017692 Uniprot:F1NJ62
Length = 851
Score = 292 (107.8 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 58/122 (47%), Positives = 78/122 (63%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K L L++TPTRELA+QV H+ VAK ++ +VGGM+ +KQER+L +PE+V+ T
Sbjct: 391 KRPLLGLVLTPTRELAVQVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIAT 450
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSE 381
PGRLWEL+ HL L L V+DEADRM+E GHF EL ++++L N S
Sbjct: 451 PGRLWELIKERHPHLSNLRQLRCLVIDEADRMVERGHFLELSQLLEVL---NDSQYNPKR 507
Query: 382 QT 383
QT
Sbjct: 508 QT 509
Score = 221 (82.9 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 51/132 (38%), Positives = 73/132 (55%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455
KRQT VFSAT+ L ++ K+ + ++ +E L E+ G++ ++DLT
Sbjct: 506 KRQTFVFSATLTLVHQTPARILQK--KNAKKIDKKTKLEMLMEKVGIKGKPKVIDLTRKE 563
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
L E+ I C +KD YLYY L + GRT+VF SI ++ +SSLL IL D +
Sbjct: 564 ATVETLMETRIHCDTNEKDYYLYYFLLQY-PGRTMVFANSIDCIKRLSSLLTILNCDPFP 622
Query: 516 LHAQMQQRARLK 527
LHA M Q+ RLK
Sbjct: 623 LHANMHQKQRLK 634
Score = 116 (45.9 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 162 EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAE 221
E L + + AW +L + ++K++ L F PTPIQ +P+A D++GAAE
Sbjct: 182 EVLSTSTDHKADVSAWKDLFVPQPVLKALSSLGFSAPTPIQALTLPSAIRDNMDILGAAE 241
Query: 222 TGSGKTLAFGLPIMQRL 238
TG L P++ ++
Sbjct: 242 TGIN-LLTVSFPVISQI 257
>SGD|S000000346 [details] [associations]
symbol:MAK5 "Essential nucleolar protein" species:4932
"Saccharomyces cerevisiae" [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000000346 GO:GO:0005524 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000463 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000466 KO:K14805
HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847 EMBL:X78937
OrthoDB:EOG44J5S7 EMBL:Z36011 PIR:S46011 RefSeq:NP_009700.1
ProteinModelPortal:P38112 SMR:P38112 DIP:DIP-6337N IntAct:P38112
MINT:MINT-612928 STRING:P38112 PaxDb:P38112 PeptideAtlas:P38112
EnsemblFungi:YBR142W GeneID:852439 KEGG:sce:YBR142W CYGD:YBR142w
OMA:HLPRAAD NextBio:971336 Genevestigator:P38112 GermOnline:YBR142W
Uniprot:P38112
Length = 773
Score = 479 (173.7 bits), Expect = 4.9e-47, Sum P(2) = 4.9e-47
Identities = 127/375 (33%), Positives = 202/375 (53%)
Query: 165 VNEAEIS-TEFDAWNELR-LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAET 222
+N +IS W L L +++S+ L F PT IQK IP QG DV+G A T
Sbjct: 159 INIDDISPVNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIM-QGVDVMGKAST 217
Query: 223 GSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTD 282
GSGKTLA+G+PI+++L+ K ++ P +LI TPTRELA QVTD
Sbjct: 218 GSGKTLAYGIPIVEKLISN-------FSQKNKK-----PI----SLIFTPTRELAHQVTD 261
Query: 283 HLKGVAKGINVR----VVPIVGGMSTEKQERLLKA--RPEVVVGTPGRLWELMSGGEKHL 336
HLK + + + + ++ + GG+S +KQ+RLLK ++V+ TPGR EL+ +
Sbjct: 262 HLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLI 321
Query: 337 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKK 396
++ +LDEADR++++GHF E + II L + N+ SE + K
Sbjct: 322 KRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS----------KI 371
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNG---LNS-IETLSERAGMRANVAIVDLT 452
QTL+FSAT ++ F K +K ++ N LN+ I+ L + + I+D
Sbjct: 372 WQTLIFSATFSIDL-FDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTN 430
Query: 453 NMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID 512
++++++ES IEC ++D Y YY L++ G T++FC +I +++ ++ L LGI
Sbjct: 431 PESKVSSQIKESLIECPPLERDLYCYYFLTMF-PGTTLIFCNAIDSVKKLTVYLNNLGIP 489
Query: 513 VWTLHAQMQQRARLK 527
+ +H+ M Q+ RLK
Sbjct: 490 AFQIHSSMTQKNRLK 504
Score = 41 (19.5 bits), Expect = 4.9e-47, Sum P(2) = 4.9e-47
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 61 GGFLSLEEID 70
GGF LEEID
Sbjct: 41 GGFYGLEEID 50
>UNIPROTKB|F1SCG7 [details] [associations]
symbol:LOC100620190 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 OMA:DQQEERR GeneTree:ENSGT00550000074847 EMBL:CT990641
RefSeq:XP_003356831.1 UniGene:Ssc.51900 UniGene:Ssc.99043
Ensembl:ENSSSCT00000002742 GeneID:100157901 KEGG:ssc:100157901
Uniprot:F1SCG7
Length = 856
Score = 319 (117.4 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 68/149 (45%), Positives = 92/149 (61%)
Query: 236 QRLLEEREKAAKM-LEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294
++L EE K L K +E + PK L L++TPTRELA+QV H+ VAK ++
Sbjct: 356 EKLDEEHSGELKQELNSKIATSEAH-PKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIK 414
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
+VGGMST+KQ+R+L +PE+V+ TPGRLWEL+ + HL L L V+DEADRM+
Sbjct: 415 TAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADRMV 474
Query: 355 ENGHFRELQSIIDMLPMTNGSNKGQSEQT 383
E GHF EL +++ML N S QT
Sbjct: 475 EKGHFAELSQLLEML---NDSQYNPKRQT 500
Score = 235 (87.8 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 53/136 (38%), Positives = 78/136 (57%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 497 KRQTLVFSATLTLVHQAPARILHK--KHAKKIDKTAKLDLLMQKIGMRGKPKVIDLTRNE 554
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
L E+ I C+ ++KD YLYY L + GRT+VF SI+ ++ +S LLK+L I T
Sbjct: 555 ATVETLTETKIHCETDEKDLYLYYFLMQY-PGRTLVFANSISCIKRLSGLLKVLDIMPLT 613
Query: 516 LHAQMQQRARLKLFSQ 531
LHA M Q+ RL+ Q
Sbjct: 614 LHACMHQKQRLRNLEQ 629
Score = 145 (56.1 bits), Expect = 9.0e-27, Sum P(2) = 9.0e-27
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGL 232
+ AW +L + +++++ L F PTPIQ + A D++GAAETGSGKTLAF +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 233 PIMQRLLE--EREKAAKMLEDKGEEAEK 258
P++ +L+ ++K +L G E+
Sbjct: 249 PMIHAVLQWQVKKKPTPVLSTTGAPPEE 276
>UNIPROTKB|I3LKU6 [details] [associations]
symbol:LOC100620190 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00550000074847 EMBL:CU468306
Ensembl:ENSSSCT00000028542 OMA:FANTIDC Uniprot:I3LKU6
Length = 373
Score = 236 (88.1 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 46/110 (41%), Positives = 70/110 (63%)
Query: 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333
++ A+++ + + V + ++ +VGGMST+KQ+R+L +PE+V+ TPGRLWEL+ +
Sbjct: 1 KKQAVRLNNSVPYVLCTLGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQ 60
Query: 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQT 383
HL L L V+DEADRM+E GHF EL +++ML N S QT
Sbjct: 61 PHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML---NDSQYNPKRQT 107
Score = 235 (87.8 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 53/136 (38%), Positives = 78/136 (57%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 104 KRQTLVFSATLTLVHQAPARILHK--KHAKKIDKTAKLDLLMQKIGMRGKPKVIDLTRNE 161
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
L E+ I C+ ++KD YLYY L + GRT+VF SI+ ++ +S LLK+L I T
Sbjct: 162 ATVETLTETKIHCETDEKDLYLYYFLMQY-PGRTLVFANSISCIKRLSGLLKVLDIMPLT 220
Query: 516 LHAQMQQRARLKLFSQ 531
LHA M Q+ RL+ Q
Sbjct: 221 LHACMHQKQRLRNLEQ 236
>UNIPROTKB|G3V529 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:13266 ChiTaRS:DDX24 ProteinModelPortal:G3V529 SMR:G3V529
Ensembl:ENST00000555054 ArrayExpress:G3V529 Bgee:G3V529
Uniprot:G3V529
Length = 816
Score = 324 (119.1 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 78/203 (38%), Positives = 111/203 (54%)
Query: 240 EEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIV 299
E+ + L+DK + Y PK L L++TPTRELA+QV H+ VA+ ++ +V
Sbjct: 321 EQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILV 379
Query: 300 GGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
GGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 380 GGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHF 439
Query: 360 RELQSIIDMLPMTNGSNKGQSEQTQNCVTV--SSLQR--KKRQTLVFSATIALSADFRKK 415
EL +++ML + + K Q+ +T+ + R K+ T T L +K
Sbjct: 440 AELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKI 499
Query: 416 LKHGSLKSKQSVNGLNSIETLSE 438
G K ++ETL+E
Sbjct: 500 GMRGKPKVIDLTRNEATVETLTE 522
Score = 228 (85.3 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 457 KRQTLVFSATLTLVHQAPARILHK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNE 514
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
L E+ I C+ ++KD YLYY L + GR++VF SI+ ++ +S LLK+L I T
Sbjct: 515 ATVETLTETKIHCETDEKDFYLYYFLMQY-PGRSLVFANSISCIKRLSGLLKVLDIMPLT 573
Query: 516 LHAQMQQRARLKLFSQ 531
LHA M Q+ RL+ Q
Sbjct: 574 LHACMHQKQRLRNLEQ 589
Score = 143 (55.4 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 157 PDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
P A+ + + + AW +L + +++++ L F PTPIQ + A D+
Sbjct: 131 PKKAKTWIPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 190
Query: 217 IGAAETGSGKTLAFGLPIMQRLLEEREKAA 246
+GAAETGSGKTLAF +P++ +L+ +++ A
Sbjct: 191 LGAAETGSGKTLAFAIPMIHAVLQWQKRNA 220
>UNIPROTKB|Q9GZR7 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003724 "RNA helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 EMBL:AF214731
EMBL:AL136886 EMBL:AK025162 EMBL:BC008847 EMBL:BC009406
IPI:IPI00006987 RefSeq:NP_065147.1 UniGene:Hs.510328
ProteinModelPortal:Q9GZR7 SMR:Q9GZR7 DIP:DIP-47301N IntAct:Q9GZR7
MINT:MINT-1378437 STRING:Q9GZR7 PhosphoSite:Q9GZR7 DMDM:18202929
SWISS-2DPAGE:Q9GZR7 PaxDb:Q9GZR7 PeptideAtlas:Q9GZR7 PRIDE:Q9GZR7
DNASU:57062 Ensembl:ENST00000330836 GeneID:57062 KEGG:hsa:57062
UCSC:uc001ycj.3 CTD:57062 GeneCards:GC14M094517 HGNC:HGNC:13266
HPA:HPA002554 MIM:606181 neXtProt:NX_Q9GZR7 PharmGKB:PA27211
HOGENOM:HOG000290702 HOVERGEN:HBG104200 InParanoid:Q9GZR7
OMA:DQQEERR PhylomeDB:Q9GZR7 ChiTaRS:DDX24 GenomeRNAi:57062
NextBio:62861 ArrayExpress:Q9GZR7 Bgee:Q9GZR7 CleanEx:HS_DDX24
Genevestigator:Q9GZR7 GermOnline:ENSG00000089737 Uniprot:Q9GZR7
Length = 859
Score = 324 (119.1 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 78/203 (38%), Positives = 111/203 (54%)
Query: 240 EEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIV 299
E+ + L+DK + Y PK L L++TPTRELA+QV H+ VA+ ++ +V
Sbjct: 364 EQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILV 422
Query: 300 GGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
GGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 423 GGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHF 482
Query: 360 RELQSIIDMLPMTNGSNKGQSEQTQNCVTV--SSLQR--KKRQTLVFSATIALSADFRKK 415
EL +++ML + + K Q+ +T+ + R K+ T T L +K
Sbjct: 483 AELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKI 542
Query: 416 LKHGSLKSKQSVNGLNSIETLSE 438
G K ++ETL+E
Sbjct: 543 GMRGKPKVIDLTRNEATVETLTE 565
Score = 228 (85.3 bits), Expect = 9.3e-26, Sum P(2) = 9.3e-26
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 500 KRQTLVFSATLTLVHQAPARILHK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNE 557
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
L E+ I C+ ++KD YLYY L + GR++VF SI+ ++ +S LLK+L I T
Sbjct: 558 ATVETLTETKIHCETDEKDFYLYYFLMQY-PGRSLVFANSISCIKRLSGLLKVLDIMPLT 616
Query: 516 LHAQMQQRARLKLFSQ 531
LHA M Q+ RL+ Q
Sbjct: 617 LHACMHQKQRLRNLEQ 632
Score = 143 (55.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 157 PDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
P A+ + + + AW +L + +++++ L F PTPIQ + A D+
Sbjct: 174 PKKAKTWIPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 233
Query: 217 IGAAETGSGKTLAFGLPIMQRLLEEREKAA 246
+GAAETGSGKTLAF +P++ +L+ +++ A
Sbjct: 234 LGAAETGSGKTLAFAIPMIHAVLQWQKRNA 263
>UNIPROTKB|E2RIC4 [details] [associations]
symbol:DDX24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:DQQEERR
GeneTree:ENSGT00550000074847 EMBL:AAEX03005950
Ensembl:ENSCAFT00000027950 Uniprot:E2RIC4
Length = 818
Score = 317 (116.6 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 76/204 (37%), Positives = 111/204 (54%)
Query: 241 EREKAAKMLEDKGEEAE--KYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPI 298
+ E+ ++ ++ G + K PK L L++TPTRELA+QV H+ VAK ++ +
Sbjct: 321 DEEETGRLKQELGGKMTTCKVHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAIL 380
Query: 299 VGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 358
VGGMST+KQ+R+L +PE+VV TPGRLWEL+ HL L L V+DEADRM+E GH
Sbjct: 381 VGGMSTQKQQRMLNRQPEIVVATPGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGH 440
Query: 359 FRELQSIIDMLPMTNGSNKGQS---EQTQNCVTVSSLQ-RKKRQTLVFSATIALSADFRK 414
F EL +++ML + + K Q+ T V + + K+ T T L +K
Sbjct: 441 FAELSQLLEMLGDSQYNPKRQTLIFSATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQK 500
Query: 415 KLKHGSLKSKQSVNGLNSIETLSE 438
G K ++ETL+E
Sbjct: 501 IGMRGKPKVIDLTRNEATVETLTE 524
Score = 229 (85.7 bits), Expect = 9.9e-26, Sum P(2) = 9.9e-26
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455
KRQTL+FSAT+ L ++ H K + ++ ++ ++ GMR ++DLT
Sbjct: 459 KRQTLIFSATLTLVHQAPARILHK--KHTKKIDKTAKLDLFVQKIGMRGKPKVIDLTRNE 516
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
L E+ I C+ ++KD YLYY L + GRT+VF SI+ ++ +S LLK+L I T
Sbjct: 517 ATVETLTETKIHCETDEKDLYLYYFLMQY-PGRTLVFANSISCIKRLSGLLKVLDIMPLT 575
Query: 516 LHAQMQQRARLKLFSQ 531
LHA M Q+ RL+ Q
Sbjct: 576 LHACMHQKQRLRNLEQ 591
Score = 141 (54.7 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 157 PDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
P A+ + + + AW +L + +++++ L F PTPIQ + A D+
Sbjct: 172 PKKAKTWMPEMHDHKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDI 231
Query: 217 IGAAETGSGKTLAFGLPIMQRLLEEREK 244
+GAAETGSGKTLAF +P++ +L+ + K
Sbjct: 232 LGAAETGSGKTLAFAIPMIHTVLQWQVK 259
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 372 (136.0 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 94/238 (39%), Positives = 137/238 (57%)
Query: 251 DKGEEAEKYAPKGH--LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQE 308
D+ +AE+ A + L L++TPTRELA+QV +HL AK +RV I GG++ KQE
Sbjct: 325 DEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQE 384
Query: 309 RLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 368
R+L+ P++VV TPGRLWEL + G +HL ++ +SF V+DE DRM+E GHF EL+S++ +
Sbjct: 385 RVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKV 444
Query: 369 LPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKS--KQS 426
L S++ + Q QN V ++L TLV D +K G KQ+
Sbjct: 445 L----NSDEQKKHQRQNFVYSATL------TLVHDLP-----DHMQKRNVGKRPKFVKQT 489
Query: 427 VNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVH 484
V+ IE+L E G+ + IVD+T+ A L ES + C + KD +LYY + H
Sbjct: 490 VD--QKIESLIEELGI-SQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRH 544
Score = 198 (74.8 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
Identities = 57/159 (35%), Positives = 88/159 (55%)
Query: 377 KGQSEQTQNCVTV--SSLQRK-KRQTLVFSATIALSADFRKKLKHGSLKS-----KQSVN 428
KG E+ ++ + V S Q+K +RQ V+SAT+ L D ++ ++ KQ+V+
Sbjct: 432 KGHFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVD 491
Query: 429 GLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGR 488
IE+L E G+ + IVD+T+ A L ES + C + KD +LYY + H GR
Sbjct: 492 --QKIESLIEELGI-SQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRH-PGR 547
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
TIVFC SI ++ +++L +L + LHA M Q+ RLK
Sbjct: 548 TIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLK 586
Score = 185 (70.2 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
Identities = 45/135 (33%), Positives = 72/135 (53%)
Query: 158 DDAEEELVNEAEIST----EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG 213
+ +EE IST + AWN L + +++++ FK PT IQ +PAA H
Sbjct: 194 ESTDEEAPELVPISTGEAEDMSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGK 253
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273
KD++GAAETGSGKTLAFG+P++ ++E +++ + K + + P+ +TP
Sbjct: 254 KDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPP 313
Query: 274 RELALQVTDHLKGVA 288
E DH+ G +
Sbjct: 314 PE----ELDHVSGAS 324
Score = 41 (19.5 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 235 MQRLLEEREKAA---KMLEDKGEE 255
MQ+L E+REK K + KG+E
Sbjct: 130 MQKLREKREKRKELRKQKKSKGKE 153
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 308 (113.5 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 75/195 (38%), Positives = 118/195 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+++ L L+ L+ ++ L +++PTPIQ IPA + +DV+ A+TG+GKT AF LPI+
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTK-QDVMAGAQTGTGKTAAFALPIL 60
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
Q L M +++ + A K +RAL++ PTRELALQV AKG ++RV
Sbjct: 61 QLL---------MADNQSDHAAKA-----IRALVLVPTRELALQVQQSFVKYAKGTDIRV 106
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
GG+S E Q+ + A +V++ TPGRL + + G +L +L+TL F DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVF---DEADRMLD 163
Query: 356 NGHFRELQSIIDMLP 370
G E+Q+++ +P
Sbjct: 164 MGFMDEIQAVLKQVP 178
Score = 53 (23.7 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 12/74 (16%), Positives = 34/74 (45%)
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
A ++E+ + K ++ +++ + ++F + + +++ L LG+ + H
Sbjct: 217 AAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFH 276
Query: 518 AQMQQRARLKLFSQ 531
+ Q AR K+ +
Sbjct: 277 GDLSQGAREKVLQE 290
Score = 44 (20.5 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 396 KRQTLVFSATIALSA-DFRKKL 416
+RQTL+FSAT+ S F K L
Sbjct: 180 QRQTLLFSATLDDSIFSFSKNL 201
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 308 (113.5 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 75/195 (38%), Positives = 118/195 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+++ L L+ L+ ++ L +++PTPIQ IPA + +DV+ A+TG+GKT AF LPI+
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTK-QDVMAGAQTGTGKTAAFALPIL 60
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
Q L M +++ + A K +RAL++ PTRELALQV AKG ++RV
Sbjct: 61 QLL---------MADNQSDHAAKA-----IRALVLVPTRELALQVQQSFVKYAKGTDIRV 106
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
GG+S E Q+ + A +V++ TPGRL + + G +L +L+TL F DEADRM++
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVF---DEADRMLD 163
Query: 356 NGHFRELQSIIDMLP 370
G E+Q+++ +P
Sbjct: 164 MGFMDEIQAVLKQVP 178
Score = 53 (23.7 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 12/74 (16%), Positives = 34/74 (45%)
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
A ++E+ + K ++ +++ + ++F + + +++ L LG+ + H
Sbjct: 217 AAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFH 276
Query: 518 AQMQQRARLKLFSQ 531
+ Q AR K+ +
Sbjct: 277 GDLSQGAREKVLQE 290
Score = 44 (20.5 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 396 KRQTLVFSATIALSA-DFRKKL 416
+RQTL+FSAT+ S F K L
Sbjct: 180 QRQTLLFSATLDDSIFSFSKNL 201
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 302 (111.4 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 73/196 (37%), Positives = 114/196 (58%)
Query: 178 NELRLHPLLMKSIYRLQ---FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
+E + LL I R+ +K+PTPIQK CIPA + G D++G A+TG+GKT AF LPI
Sbjct: 2 SEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALIN-GNDLLGIAQTGTGKTAAFSLPI 60
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294
+ + R K ++ K + R+LI+TPTRELA Q+ ++ + G+ ++
Sbjct: 61 INKF--GRNK----IDIKAKST---------RSLILTPTRELASQIMQNIDDYSDGLGLK 105
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
+ GG+ + Q ++ +++V TPGRL +L+ G+ + L FVLDEAD M+
Sbjct: 106 TKVVYGGVGRQAQVDSIELGLDILVATPGRLLDLIETGD---INFKALEVFVLDEADTML 162
Query: 355 ENGHFRELQSIIDMLP 370
+ G F+++QSII LP
Sbjct: 163 DMGFFKDVQSIISKLP 178
Score = 51 (23.0 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 20/93 (21%), Positives = 39/93 (41%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
IE L+E + + + +T V + + +S + +K L+ IL+ + ++F
Sbjct: 194 IEILAE--AILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIF 251
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
C + I L+ I +LH+ Q R
Sbjct: 252 CKTKYGADIIVKALEKASITAASLHSGKTQAVR 284
Score = 46 (21.3 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 389 VSSLQRKKRQTLVFSATI 406
+S L K RQTL+FSAT+
Sbjct: 174 ISKLP-KSRQTLLFSATM 190
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 305 (112.4 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 81/204 (39%), Positives = 116/204 (56%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+ S+ ++ EL + L + L + PTP+Q A IPA G+DV+ A TGSGKT
Sbjct: 3 QASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVL-SGRDVLAGANTGSGKTA 61
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
AF LP++QRL E AK A+K A G +R L++ PTRELA QV D A
Sbjct: 62 AFALPLLQRLSE-----AK-------SADKSA--GVVRCLVLVPTRELAQQVADSFLSYA 107
Query: 289 KGIN--VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346
N +++V GG+S Q + L+A +V+V TPGRL +L++ + ++L +S FV
Sbjct: 108 SHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLAS---NALKLTQVSAFV 164
Query: 347 LDEADRMIENGHFRELQSIIDMLP 370
LDEADRM+ G EL+ ++ LP
Sbjct: 165 LDEADRMLSLGFTEELEQVLAALP 188
Score = 73 (30.8 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+E+ I E K A L +++ H + ++F ++ H++ L GI H
Sbjct: 228 IEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDK 287
Query: 521 QQRARLKL 528
Q AR ++
Sbjct: 288 AQGARTRV 295
Score = 43 (20.2 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 378 GQSEQTQNCVTVSSLQRKKRQTLVFSAT 405
G +E+ + +++L R+K QTL+FSAT
Sbjct: 175 GFTEELEQ--VLAALPRQK-QTLLFSAT 199
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 305 (112.4 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 81/204 (39%), Positives = 116/204 (56%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+ S+ ++ EL + L + L + PTP+Q A IPA G+DV+ A TGSGKT
Sbjct: 3 QASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVL-SGRDVLAGANTGSGKTA 61
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
AF LP++QRL E AK A+K A G +R L++ PTRELA QV D A
Sbjct: 62 AFALPLLQRLSE-----AK-------SADKSA--GVVRCLVLVPTRELAQQVADSFLSYA 107
Query: 289 KGIN--VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346
N +++V GG+S Q + L+A +V+V TPGRL +L++ + ++L +S FV
Sbjct: 108 SHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLAS---NALKLTQVSAFV 164
Query: 347 LDEADRMIENGHFRELQSIIDMLP 370
LDEADRM+ G EL+ ++ LP
Sbjct: 165 LDEADRMLSLGFTEELEQVLAALP 188
Score = 73 (30.8 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+E+ I E K A L +++ H + ++F ++ H++ L GI H
Sbjct: 228 IEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDK 287
Query: 521 QQRARLKL 528
Q AR ++
Sbjct: 288 AQGARTRV 295
Score = 43 (20.2 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 378 GQSEQTQNCVTVSSLQRKKRQTLVFSAT 405
G +E+ + +++L R+K QTL+FSAT
Sbjct: 175 GFTEELEQ--VLAALPRQK-QTLLFSAT 199
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 348 (127.6 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 86/243 (35%), Positives = 141/243 (58%)
Query: 165 VNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGS 224
+ I +WNE ++ I ++ +KEPTPIQ+ IP Q +D+IG AETGS
Sbjct: 384 IKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGL-QNRDIIGVAETGS 442
Query: 225 GKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 284
GKTLAF +P++ ++ K + LED + P A+I+ PTRELA Q+ +
Sbjct: 443 GKTLAFLIPLLS-WIQSLPKIER-LEDVDQ-----GPY----AIIMAPTRELAQQIEEET 491
Query: 285 KGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344
+ + +R V +VGG+S E+Q L+ E+V+ TPGRL +++ ++LV L+ ++
Sbjct: 492 TKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--RYLV-LNQCTY 548
Query: 345 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKK-RQTLVFS 403
VLDEADRMI+ G ++Q I++ +P+TN + + + + + +KK RQT++F+
Sbjct: 549 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFT 608
Query: 404 ATI 406
AT+
Sbjct: 609 ATM 611
Score = 42 (19.8 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 470 EEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
E DK L ILS I+F ++ L+ LG + TLH Q R
Sbjct: 650 ENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR 705
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 316 (116.3 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 73/193 (37%), Positives = 114/193 (59%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
EL + L+K+ RL +K P+ IQ +P A +GKDVIG A+TGSGKT AF +PI+Q L
Sbjct: 13 ELGVREELVKACERLGWKNPSKIQAEALPFAL-EGKDVIGLAQTGSGKTGAFAIPILQAL 71
Query: 239 LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPI 298
LE + + + ++ + P A +++PTRELA+Q+ + + + I++R +
Sbjct: 72 LEY------VYDSEPKKGRR--PDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVL 123
Query: 299 VGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 358
VGG+ +Q L RP V+V TPGRLW+ MS + L +L + VLDEADR++
Sbjct: 124 VGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGF--SLKSLKYLVLDEADRLLNEDF 181
Query: 359 FRELQSIIDMLPM 371
+ L I++ +P+
Sbjct: 182 EKSLNQILEEIPL 194
Score = 82 (33.9 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA +R N ++ + + L++ + + KD YL YILS + +++F +
Sbjct: 213 QRACLR-NPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCD 271
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
R ++ +L+ LG + QM Q RL
Sbjct: 272 GTRFLALVLRSLGFRAIPISGQMTQSKRL 300
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 204 (76.9 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 47/110 (42%), Positives = 66/110 (60%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + ALI+TPTRELA Q+ + + K I ++ IVGG S Q R L RP VVV
Sbjct: 155 PYG-IYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVA 213
Query: 321 TPGRLWELMSGGEKHLVELHT-LSFFVLDEADRMIENGHFRELQSIIDML 369
TPGRL +L+ + ++ + FFVLDEADRM+E + +L+ I + +
Sbjct: 214 TPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESI 263
Score = 148 (57.2 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 30/82 (36%), Positives = 53/82 (64%)
Query: 158 DDAEEEL-VNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
DD + + ++E ++T+ +++L + + + + +Q K TP+Q ACIP +G D+
Sbjct: 73 DDTPKPIQISEDNMTTK--KFSQLGVCSWITQQLQTMQIKTATPVQAACIPKIL-EGSDI 129
Query: 217 IGAAETGSGKTLAFGLPIMQRL 238
+G A TG+GKTLAF +PI+Q+L
Sbjct: 130 LGCARTGTGKTLAFAIPILQKL 151
Score = 92 (37.4 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 459 NKLEESFIECKEEDKDAYLYYILSVHGQ----GRTIVFCTSIAALRHISSLLKILGIDVW 514
++LE+ ++ C KDAYL Y++ + + ++F + + ++ + + LG V
Sbjct: 306 DRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVG 365
Query: 515 TLHAQMQQRARLKLFS 530
+LH+Q+ Q+ RL S
Sbjct: 366 SLHSQIPQKQRLAALS 381
Score = 59 (25.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 25/124 (20%), Positives = 54/124 (43%)
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
T+ LL+A +V+ G+ + + KH+ + T EA+ +EN F E +
Sbjct: 442 TQYDVELLQAVEQVI----GKKLDELKVSPKHVTKYVTQVLVAKKEAELKLENQKFGEKK 497
Query: 364 SIIDMLPMT-NGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 422
I + +G ++ ++++ + + KR+ S + F+KKL +K
Sbjct: 498 EINRRKELLMSGMDEDEADRHLEEMRTRRMTNSKRKLEKISGQLDKRDRFQKKLAAKKVK 557
Query: 423 SKQS 426
+++
Sbjct: 558 KEEN 561
Score = 43 (20.2 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 395 KKRQTLVFSATI 406
+KRQTL+ SATI
Sbjct: 265 EKRQTLLLSATI 276
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 340 (124.7 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 84/232 (36%), Positives = 138/232 (59%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W E L P +++ I + +K+PTPIQ+ IP Q +D+IG AETGSGKT AF +P++
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGL-QNRDIIGVAETGSGKTAAFLIPLLV 438
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+ K+ D+ E++++ P A+I+ PTRELA Q+ + K + +R V
Sbjct: 439 WITT----LPKI--DRIEDSDQ-GPY----AIILAPTRELAQQIEEETIKFGKPLGIRTV 487
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLDEADRMI+
Sbjct: 488 AVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLDEADRMIDM 544
Query: 357 GHFRELQSIIDMLPMTNGS-NKGQSEQTQNCV-TVSSLQRKKRQTLVFSATI 406
G ++Q I++ +P+TN + +E + + S + K RQT++F+AT+
Sbjct: 545 GFEPDVQKILEYIPVTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATM 596
Score = 46 (21.3 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 21/94 (22%), Positives = 42/94 (44%)
Query: 432 SIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491
++E L+ R+ +R A+V + + ++E+ I E +K L +L+ + I+
Sbjct: 599 AVERLA-RSYLR-RPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLASGFEPPIII 656
Query: 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
F ++ L+ +G + TLH Q R
Sbjct: 657 FVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR 690
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 208 (78.3 bits), Expect = 3.2e-30, Sum P(4) = 3.2e-30
Identities = 48/117 (41%), Positives = 70/117 (59%)
Query: 257 EKYA--PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKAR 314
EK++ P G + ALI+TPTRELA+Q+ + + +N++ IVGGM +Q L R
Sbjct: 67 EKWSKDPSG-IFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKR 125
Query: 315 PEVVVGTPGRLWELM-SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
P VVV TPGRL +L+ S GE+ + L + F V+DEADR++ +L +LP
Sbjct: 126 PHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP 182
Score = 122 (48.0 bits), Expect = 3.2e-30, Sum P(4) = 3.2e-30
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
++++L + P L+ ++ L EPT IQ+ I A +G++ IG A+TGSGKT AF LPI+
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVI-AQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 236 QR 237
++
Sbjct: 67 EK 68
Score = 94 (38.1 bits), Expect = 3.2e-30, Sum P(4) = 3.2e-30
Identities = 23/80 (28%), Positives = 46/80 (57%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV--HGQGRTIVFCTSIAALRHISSLL 506
V+ N+ V + L++S+I + ++AYL ++L++ + + I+F I S+L
Sbjct: 220 VETDNISV-PSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSIL 278
Query: 507 KILGIDVWTLHAQMQQRARL 526
++L + V LH++M QR R+
Sbjct: 279 RLLELRVTELHSEMVQRERI 298
Score = 53 (23.7 bits), Expect = 3.2e-30, Sum P(4) = 3.2e-30
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 380 SEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIET 435
++ +C +V + RQTL+F+AT+ D ++LK+ K+ + L +ET
Sbjct: 171 ADDLDDCFSVLPAS-EDRQTLLFTATVT---DAIRQLKYQPQKNNKPPLWLYEVET 222
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 176 (67.0 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
AL++TPTRELA Q+ + + + GI ++ +VGGM Q L +P +++ TPGRL
Sbjct: 132 ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 191
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ + + L + + V+DEADR++ EL I+ +LP
Sbjct: 192 DHLENMKGF--NLKAIKYLVMDEADRILNMDFEVELDKILKVLP 233
Score = 174 (66.3 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 42/97 (43%), Positives = 60/97 (61%)
Query: 150 SVAVSNGPDD--AEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
S A +G DD +E++ E +++ W +L L+ L ++ L++K P+ IQ+ IP
Sbjct: 39 SEAALSGEDDKGSEDDAAEEQKLT-----WKDLGLNEALCQACDELKWKAPSKIQREAIP 93
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
A QGKDVIG AETGSGKT AF LPI+ LLE ++
Sbjct: 94 VAL-QGKDVIGLAETGSGKTGAFALPILHALLENPQR 129
Score = 101 (40.6 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V V+++N +L++S++ + KD YL +IL+ ++FC++
Sbjct: 253 QRASLKDPVK-VEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCN 311
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ +L+ LG+ LH QM Q RL
Sbjct: 312 NTVKTALMLRALGLAAIPLHGQMSQNKRL 340
Score = 59 (25.8 bits), Expect = 7.4e-26, Sum P(3) = 7.4e-26
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 395 KKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSE 438
++R+T +FSAT+ KKL+ SLK V N +T+ +
Sbjct: 234 RERRTFLFSATMTKKV---KKLQRASLKDPVKVEVSNKYQTVEQ 274
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 222 (83.2 bits), Expect = 6.1e-30, Sum P(4) = 6.1e-30
Identities = 45/106 (42%), Positives = 69/106 (65%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
++AL++ PTRELA+QV++ L + VRV+PI GG E+Q R LK P V+VGTPGR
Sbjct: 71 VQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGR 130
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ + ++ G L +HT+ VLDEAD M+ G ++++I+ +P
Sbjct: 131 IIDHINRGTLRLEHVHTV---VLDEADEMLNMGFIEDIEAILSHVP 173
Score = 153 (58.9 bits), Expect = 6.1e-30, Sum P(4) = 6.1e-30
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L +MK+I R+ F+E TPIQ IP + Q KDVIG A+TG+GKT AFG+PI++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSL-QNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 237 RL 238
++
Sbjct: 63 KV 64
Score = 56 (24.8 bits), Expect = 6.1e-30, Sum P(4) = 6.1e-30
Identities = 20/96 (20%), Positives = 39/96 (40%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
I ++ER + V M V +++ ++E E+ K L +L + IVF
Sbjct: 189 IRRIAERFMNEPELVKVKAKEMTV--PNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVF 246
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKL 528
+ + ++ L + G +H + Q RL +
Sbjct: 247 GRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSV 282
Score = 41 (19.5 bits), Expect = 6.1e-30, Sum P(4) = 6.1e-30
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 396 KRQTLVFSATI 406
+RQTL+FSAT+
Sbjct: 175 ERQTLLFSATM 185
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 340 (124.7 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 85/240 (35%), Positives = 142/240 (59%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+I +W + L P +++ I + +KEPTPIQ+ IP Q +D+IG AETGSGKT
Sbjct: 384 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 442
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
AF +P++ + K+ D+ EE+++ P A+I+ PTRELA Q+ +
Sbjct: 443 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQIEEETIKFG 491
Query: 289 KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 492 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 548
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGS-NKGQSEQTQNCVT-VSSLQRKKRQTLVFSATI 406
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 549 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 608
Score = 42 (19.8 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 432 SIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491
++E L+ R+ +R A+V + + ++E+ E +K L IL I+
Sbjct: 611 AVERLA-RSYLR-RPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIII 668
Query: 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
F ++ L+ +G + TLH Q R
Sbjct: 669 FVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR 702
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 340 (124.7 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 85/240 (35%), Positives = 142/240 (59%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+I +W + L P +++ I + +KEPTPIQ+ IP Q +D+IG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
AF +P++ + K+ D+ EE+++ P A+I+ PTRELA Q+ +
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 289 KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGS-NKGQSEQTQNCVT-VSSLQRKKRQTLVFSATI 406
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 609
Score = 42 (19.8 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 432 SIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491
++E L+ R+ +R A+V + + ++E+ E +K L IL I+
Sbjct: 612 AVERLA-RSYLR-RPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIII 669
Query: 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
F ++ L+ +G + TLH Q R
Sbjct: 670 FVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR 703
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 340 (124.7 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 85/240 (35%), Positives = 142/240 (59%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+I +W + L P +++ I + +KEPTPIQ+ IP Q +D+IG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
AF +P++ + K+ D+ EE+++ P A+I+ PTRELA Q+ +
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 289 KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGS-NKGQSEQTQNCVT-VSSLQRKKRQTLVFSATI 406
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 609
Score = 42 (19.8 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 432 SIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491
++E L+ R+ +R A+V + + ++E+ E +K L IL I+
Sbjct: 612 AVERLA-RSYLR-RPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIII 669
Query: 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
F ++ L+ +G + TLH Q R
Sbjct: 670 FVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR 703
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 340 (124.7 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 85/240 (35%), Positives = 142/240 (59%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+I +W + L P +++ I + +KEPTPIQ+ IP Q +D+IG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
AF +P++ + K+ D+ EE+++ P A+I+ PTRELA Q+ +
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 289 KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGS-NKGQSEQTQNCVT-VSSLQRKKRQTLVFSATI 406
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQT++F+AT+
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATM 609
Score = 42 (19.8 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 432 SIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491
++E L+ R+ +R A+V + + ++E+ E +K L IL I+
Sbjct: 612 AVERLA-RSYLR-RPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIII 669
Query: 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
F ++ L+ +G + TLH Q R
Sbjct: 670 FVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR 703
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 241 (89.9 bits), Expect = 9.3e-30, Sum P(3) = 9.3e-30
Identities = 47/111 (42%), Positives = 73/111 (65%)
Query: 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPG 323
+++AL++ PTRELA Q+ H + + N+RV+ I GG++ +KQ+RLL P VVV TPG
Sbjct: 192 YVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPG 251
Query: 324 RLWELMSGGEKHLV-ELHTLSFFVLDEADRMIENGHFRELQSIIDML--PM 371
RLW +++ E +L + VLDEADR+++ HF EL ++++L PM
Sbjct: 252 RLWSVIN--ENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPM 300
Score = 172 (65.6 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 48/189 (25%), Positives = 91/189 (48%)
Query: 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTV-SSLQRKKRQTLVFSATI--ALSADFR 413
G+F++++ ++ + K E+ + + + +RQT +FSAT L +
Sbjct: 264 GNFKKIKCLV-LDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLK 322
Query: 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDK 473
K +K G++ K + + +E + + +D +A+++ E IEC +K
Sbjct: 323 KNMK-GNITEKYN----SPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEK 377
Query: 474 DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMI 533
D YLYY++ + G+T+VF I ++ I+ L L + + LHAQ+ Q+ RL Q +
Sbjct: 378 DLYLYYLIMRY-PGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRL----QSL 432
Query: 534 TWIRKRPKG 542
+ PKG
Sbjct: 433 EKFKNNPKG 441
Score = 156 (60.0 bits), Expect = 9.3e-30, Sum P(3) = 9.3e-30
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 161 EEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAA 220
EEE + + + AW L P ++ S+ + F +P PIQ IP A+ G D+IG A
Sbjct: 109 EEEDEHNSH-GVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASI-GFDIIGKA 166
Query: 221 ETGSGKTLAFGLPIMQRLLEEREKAAKMLE 250
+TGSGKTLAFG+PI++ L R AK ++
Sbjct: 167 DTGSGKTLAFGIPILEHCL--RNVDAKYVQ 194
Score = 46 (21.3 bits), Expect = 9.3e-30, Sum P(3) = 9.3e-30
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 33 LDSLKWNHSFSAEDNDPFAFLVGSNELDG 61
LD LKW + D F +G E++G
Sbjct: 7 LDELKWKEVKLPDHLDDFDGFMGLEEIEG 35
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 343 (125.8 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 93/274 (33%), Positives = 154/274 (56%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W+E L L++ + R+ +KEPTPIQ+A IP A Q +D+IG A TGSGKT AF LP++
Sbjct: 347 SWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAM-QSRDLIGVAVTGSGKTAAFLLPLL 405
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ E ++ D+ E + P A+++ PTRELA Q+ K + + V
Sbjct: 406 CYIAE----LPRI--DEFEWRKNDGPY----AIVLAPTRELAQQIEIEAKKFTEPLGFNV 455
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V IVGG S E+Q L+ E+++ TPGRL + + E+ ++ L + ++DEADRMI+
Sbjct: 456 VSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI---ERRMLVLSQCCYVIMDEADRMID 512
Query: 356 NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKK---RQTLVFSATIALSAD- 411
G + I+D LP+TN K +E+ ++ +S K RQT++++AT+ + +
Sbjct: 513 LGFEEPVNKILDALPVTN--EKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVER 570
Query: 412 -FRKKLKHGSLKSKQSVNGLNSIETLSERAGMRA 444
RK L+ ++ + S +++T+ +R M A
Sbjct: 571 IARKYLRRPAIVTIGSAG--EAVDTVEQRVEMIA 602
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 204 (76.9 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 44/113 (38%), Positives = 68/113 (60%)
Query: 259 YAPKGHLRALIITPTRELALQVTDHLKGVAKGIN-VRVVPIVGGMSTEKQERLLKARPEV 317
Y P + +I+TPTRELALQV + K ++ +N + + VGG++ +QE LK RP++
Sbjct: 194 YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Query: 318 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
V+ TPGRL + + V+ + V+DEADRM+E G EL I+ ++P
Sbjct: 254 VIATPGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDELTEILSLIP 304
Score = 160 (61.4 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 37/96 (38%), Positives = 60/96 (62%)
Query: 157 PDDAEEELVNEAEISTE---FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG 213
P+D+ E + + E S+ ++ L+L ++K I L+F +PTPIQ A IP A G
Sbjct: 109 PEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIAL-LG 167
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKML 249
KD++ A+TGSGKT A+ +PI++RLL + + K++
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Score = 81 (33.6 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 457 LANKLEESFIECKEED--KDAYLYYILSVHG-QGRTIVFCTSIAALRHISSLLKILGIDV 513
+A+KL + F+ ++ D K A LY +L G R +VF + +L +LG+ V
Sbjct: 343 VASKLLQQFVRIRKRDQLKPALLYQLLK--GVSSRVVVFVARKETAHRLRIVLGLLGLKV 400
Query: 514 WTLHAQMQQRARLK 527
LH + Q RL+
Sbjct: 401 SELHGALTQEQRLQ 414
Score = 52 (23.4 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 338 ELHTLSFFVLDEADRMIENGHFRELQSI----IDMLPMTNGSNKGQSEQTQNCVT--VSS 391
+L T V+ R+I+ H R S I +L + + +++ E Q+ +T +S
Sbjct: 246 QLKTRPDIVIATPGRLID--HIRNSPSFSVQDIQVL-VIDEADRMLEEGFQDELTEILSL 302
Query: 392 LQRKKRQTLVFSATI 406
+ + KRQTL+FSAT+
Sbjct: 303 IPKHKRQTLLFSATM 317
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 204 (76.9 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 44/113 (38%), Positives = 68/113 (60%)
Query: 259 YAPKGHLRALIITPTRELALQVTDHLKGVAKGIN-VRVVPIVGGMSTEKQERLLKARPEV 317
Y P + +I+TPTRELALQV + K ++ +N + + VGG++ +QE LK RP++
Sbjct: 194 YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Query: 318 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
V+ TPGRL + + V+ + V+DEADRM+E G EL I+ ++P
Sbjct: 254 VIATPGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDELTEILSLIP 304
Score = 160 (61.4 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 37/96 (38%), Positives = 60/96 (62%)
Query: 157 PDDAEEELVNEAEISTE---FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG 213
P+D+ E + + E S+ ++ L+L ++K I L+F +PTPIQ A IP A G
Sbjct: 109 PEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIAL-LG 167
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKML 249
KD++ A+TGSGKT A+ +PI++RLL + + K++
Sbjct: 168 KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Score = 81 (33.6 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 457 LANKLEESFIECKEED--KDAYLYYILSVHG-QGRTIVFCTSIAALRHISSLLKILGIDV 513
+A+KL + F+ ++ D K A LY +L G R +VF + +L +LG+ V
Sbjct: 343 VASKLLQQFVRIRKRDQLKPALLYQLLK--GVSSRVVVFVARKETAHRLRIVLGLLGLKV 400
Query: 514 WTLHAQMQQRARLK 527
LH + Q RL+
Sbjct: 401 SELHGALTQEQRLQ 414
Score = 52 (23.4 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 338 ELHTLSFFVLDEADRMIENGHFRELQSI----IDMLPMTNGSNKGQSEQTQNCVT--VSS 391
+L T V+ R+I+ H R S I +L + + +++ E Q+ +T +S
Sbjct: 246 QLKTRPDIVIATPGRLID--HIRNSPSFSVQDIQVL-VIDEADRMLEEGFQDELTEILSL 302
Query: 392 LQRKKRQTLVFSATI 406
+ + KRQTL+FSAT+
Sbjct: 303 IPKHKRQTLLFSATM 317
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 173 (66.0 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 46/135 (34%), Positives = 68/135 (50%)
Query: 260 APKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVV 319
AP+ L L++ PTRELA Q++ + + I VR IVGGM Q L +P ++V
Sbjct: 111 APQT-LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIV 169
Query: 320 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQ 379
TPGRL + + + L L + +DEADR+++ L II +LP T +
Sbjct: 170 ATPGRLLDHLENTKGF--SLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFS 227
Query: 380 SEQTQNCVTVSSLQR 394
+ + V SLQR
Sbjct: 228 ATMSTK---VESLQR 239
Score = 158 (60.7 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 160 AEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGA 219
A++E E ++ EL + L ++ + +K PTPIQ IP A +G+DVIG
Sbjct: 31 AKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLAL-EGRDVIGL 89
Query: 220 AETGSGKTLAFGLPIMQRLLE 240
AETGSGKT AF LP++Q L+E
Sbjct: 90 AETGSGKTAAFALPMLQALME 110
Score = 111 (44.1 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
+E+L +RA + +N V +++ + L+ S+I + K+ YL Y+L+ I+F
Sbjct: 234 VESL-QRASL-SNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIF 291
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARL 526
T++ + ++ +L+ LG LH Q+ Q ARL
Sbjct: 292 TTTVHETQRVAFMLRALGFGAIPLHGQLSQSARL 325
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 182 (69.1 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 44/134 (32%), Positives = 67/134 (50%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L L++TPTRELA Q+ + + I V+ IVGG+ Q +L +P VV+ TPGR
Sbjct: 148 LHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGR 207
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
L + M + L L + V+DEADR++ E+ I+ ++P + + T+
Sbjct: 208 LIDHMENTKGF--NLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLFSATMTK 265
Query: 385 NCVTVSSLQRKKRQ 398
V LQR Q
Sbjct: 266 K---VQKLQRAALQ 276
Score = 159 (61.0 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 39/78 (50%), Positives = 50/78 (64%)
Query: 162 EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAE 221
EE V EI T F EL + +L ++ +L +K+PT IQ IP A QG+DVIG AE
Sbjct: 69 EETVTTGEIHTSF---KELGVTEVLCEACDQLGWKKPTKIQIEAIPVAL-QGRDVIGLAE 124
Query: 222 TGSGKTLAFGLPIMQRLL 239
TGSGKT AF +P++Q LL
Sbjct: 125 TGSGKTGAFAVPVLQSLL 142
Score = 99 (39.9 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ +KL++ +I + KD YL IL+ +VFC +
Sbjct: 271 QRAALQDPVKC-SVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTCN 329
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ ++ LL+ LGI LH QM Q RL
Sbjct: 330 NTQRVALLLRNLGITAIPLHGQMSQNKRL 358
Score = 39 (18.8 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 418 HGSLKSKQSVNGLNSIETLSERAGMRANVAI--VDLTNM-CVL 457
HG + + + LN ++ S + +VA +D+ ++ CV+
Sbjct: 349 HGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVI 391
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 183 (69.5 bits), Expect = 4.7e-29, Sum P(3) = 4.7e-29
Identities = 39/111 (35%), Positives = 63/111 (56%)
Query: 260 APKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVV 319
AP+ L AL++TPTRELA Q+++ + + I V IVGG+ + Q L +P +++
Sbjct: 90 APQ-RLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIII 148
Query: 320 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
TPGRL + + + L L F V+DEADR++ E+ I+ ++P
Sbjct: 149 ATPGRLVDHLENTKGF--NLRALKFLVMDEADRILNMDFETEVDKILKVIP 197
Score = 152 (58.6 bits), Expect = 4.7e-29, Sum P(3) = 4.7e-29
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 151 VAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAA 210
+A P A E + E ++ +L + +L ++ +L +K PT IQ IP A
Sbjct: 1 MAAGGEPGKAAGLEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVAL 60
Query: 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
QG+D+IG AETGSGKT AF LPI+Q LL+ ++
Sbjct: 61 -QGRDIIGLAETGSGKTGAFALPILQALLDAPQR 93
Score = 101 (40.6 bits), Expect = 4.7e-29, Sum P(3) = 4.7e-29
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ KL++ +I + KD+YL YIL+ ++FC++
Sbjct: 217 QRAALKNPVKCA-VSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCN 275
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + LL+ LG LH QM Q RL
Sbjct: 276 NTQRTALLLRNLGFTAIPLHGQMSQNKRL 304
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 310 (114.2 bits), Expect = 5.8e-29, Sum P(3) = 5.8e-29
Identities = 70/195 (35%), Positives = 120/195 (61%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+++ L L P +++++ ++EPTPIQ+ IPA +G+D++ +A+TG+GKT F LP++
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLL 60
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
Q L+ + A KG P +RALI+TPTRELA Q+ ++++ +K +N+R
Sbjct: 61 QHLITRQPHA------KGRR-----P---VRALILTPTRELAAQIGENVRDYSKYLNIRS 106
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
+ + GG+S Q L+ +V+V TPGRL +L ++ V+L + VLDEADRM++
Sbjct: 107 LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLE---HQNAVKLDQVEILVLDEADRMLD 163
Query: 356 NGHFRELQSIIDMLP 370
G +++ ++ LP
Sbjct: 164 MGFIHDIRRVLTKLP 178
Score = 45 (20.9 bits), Expect = 5.8e-29, Sum P(3) = 5.8e-29
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 396 KRQTLVFSATIA--LSADFRKKLKHGSLK 422
KRQ L+FSAT + + A +KL H L+
Sbjct: 180 KRQNLLFSATFSDDIKA-LAEKLLHNPLE 207
Score = 39 (18.8 bits), Expect = 5.8e-29, Sum P(3) = 5.8e-29
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 465 FIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRA 524
F++ K K L +++ + +VF + H++ L GI +H Q A
Sbjct: 226 FVDKKR--KRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGA 283
Query: 525 RLK 527
R +
Sbjct: 284 RTR 286
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 180 (68.4 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 37/106 (34%), Positives = 61/106 (57%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 93 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 152
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
L + + + L L + V+DEADR++ E+ I+ ++P
Sbjct: 153 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIP 196
Score = 156 (60.0 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 151 VAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAA 210
+A PD E L AE E + +L + +L ++ +L + +PT IQ IP A
Sbjct: 1 MAADEEPDSPTEALQTAAE-EEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLAL 59
Query: 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
QG+D+IG AETGSGKT AF LPI+ LLE ++
Sbjct: 60 -QGRDIIGLAETGSGKTGAFALPILNALLETPQR 92
Score = 97 (39.2 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ KL++ ++ + KD YL YIL+ ++FC++
Sbjct: 216 QRAALKNPVKCA-VSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCN 274
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + LL+ LG LH QM Q RL
Sbjct: 275 NTQRTALLLRNLGFTAIPLHGQMSQSKRL 303
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 297 (109.6 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 71/197 (36%), Positives = 116/197 (58%)
Query: 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
F ++ L L L+++I + EPTP+Q+ IP Q +DV+ A+TG+GKT F LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVIL-QARDVMVTAQTGTGKTAGFTLP 67
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
++QRL R + + K +RALI+TPTRELA+QV + ++ K + +
Sbjct: 68 LLQRLFVSRPPLQR------------SAKPVIRALILTPTRELAVQVFECVRAYGKYLPL 115
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
+ + GG+S + Q L+ +++V TPGRL +L++ G ++ L + FFVLDEADRM
Sbjct: 116 KATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQG---VLNLSRVEFFVLDEADRM 172
Query: 354 IENGHFRELQSIIDMLP 370
++ G +++ I+ +LP
Sbjct: 173 LDMGFLPDIRRILKLLP 189
Score = 48 (22.0 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 14/85 (16%), Positives = 34/85 (40%)
Query: 447 AIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLL 506
A++++ A ++ + K L +++ + +VF + +S L
Sbjct: 217 ALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQL 276
Query: 507 KILGIDVWTLHAQMQQRARLKLFSQ 531
+ G+ +H Q AR++ +Q
Sbjct: 277 ESDGLSSAAIHGNKSQAARMRALTQ 301
Score = 40 (19.1 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 389 VSSLQRKKRQTLVFSATIALSA-DFRKKLKH 418
+ L + RQ L+FSAT + + KL H
Sbjct: 184 ILKLLPESRQNLLFSATFSKEIKELTDKLLH 214
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 297 (109.6 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 71/197 (36%), Positives = 116/197 (58%)
Query: 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
F ++ L L L+++I + EPTP+Q+ IP Q +DV+ A+TG+GKT F LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVIL-QARDVMVTAQTGTGKTAGFTLP 67
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
++QRL R + + K +RALI+TPTRELA+QV + ++ K + +
Sbjct: 68 LLQRLFVSRPPLQR------------SAKPVIRALILTPTRELAVQVFECVRAYGKYLPL 115
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
+ + GG+S + Q L+ +++V TPGRL +L++ G ++ L + FFVLDEADRM
Sbjct: 116 KATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQG---VLNLSRVEFFVLDEADRM 172
Query: 354 IENGHFRELQSIIDMLP 370
++ G +++ I+ +LP
Sbjct: 173 LDMGFLPDIRRILKLLP 189
Score = 48 (22.0 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 14/85 (16%), Positives = 34/85 (40%)
Query: 447 AIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLL 506
A++++ A ++ + K L +++ + +VF + +S L
Sbjct: 217 ALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQL 276
Query: 507 KILGIDVWTLHAQMQQRARLKLFSQ 531
+ G+ +H Q AR++ +Q
Sbjct: 277 ESDGLSSAAIHGNKSQAARMRALTQ 301
Score = 40 (19.1 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 389 VSSLQRKKRQTLVFSATIALSA-DFRKKLKH 418
+ L + RQ L+FSAT + + KL H
Sbjct: 184 ILKLLPESRQNLLFSATFSKEIKELTDKLLH 214
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 178 (67.7 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 36/106 (33%), Positives = 61/106 (57%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +++ TPGR
Sbjct: 93 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGR 152
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
L + + + L L + V+DEADR++ E+ I+ ++P
Sbjct: 153 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIP 196
Score = 154 (59.3 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGK 214
+ P +A + +V E E T + +L + +L ++ +L + +PT IQ IP A QG+
Sbjct: 8 DSPTEASQPIVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGR 62
Query: 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
D+IG AETGSGKT AF LPI+ LLE ++
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLETPQR 92
Score = 99 (39.9 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ KL++ +I + KD YL YIL+ ++FC++
Sbjct: 216 QRAALKNPVKCA-VSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCN 274
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + LL+ LG LH QM Q RL
Sbjct: 275 NTQRTALLLRNLGFTAIPLHGQMSQSKRL 303
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 320 (117.7 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 86/233 (36%), Positives = 126/233 (54%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W E +L L+K++ R +K+P+PIQ A IP Q +DVIG AETGSGKT AF LP++
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPML 372
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ L EE E P A+++ PTRELA Q+ + A + RV
Sbjct: 373 AYI--------SRLPPMSEENETEGPY----AVVMAPTRELAQQIEEETVKFAHYLGFRV 420
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
IVGG S E+Q + E+V+ TPGRL + + E+ L+ ++ VLDEADRMI+
Sbjct: 421 TSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL---ERRYAVLNQCNYVVLDEADRMID 477
Query: 356 NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKK--RQTLVFSATI 406
G ++ ++D +P +N + + E+ L KK R T +FSAT+
Sbjct: 478 MGFEPQVAGVLDAMPSSNLKPENEEEE---------LDEKKIYRTTYMFSATM 521
Score = 57 (25.1 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 25/93 (26%), Positives = 38/93 (40%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
+E L+ R +R N +V + + + + I KE +K L +L G+ IVF
Sbjct: 525 VERLA-RKYLR-NPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVF 582
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
+ I+ L G V TLH Q R
Sbjct: 583 VNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQR 615
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 180 (68.4 bits), Expect = 4.7e-28, Sum P(3) = 4.7e-28
Identities = 37/106 (34%), Positives = 61/106 (57%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 93 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 152
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
L + + + L L + V+DEADR++ E+ I+ ++P
Sbjct: 153 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIP 196
Score = 150 (57.9 bits), Expect = 4.7e-28, Sum P(3) = 4.7e-28
Identities = 38/94 (40%), Positives = 53/94 (56%)
Query: 151 VAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAA 210
+A PD L AE E + +L + +L ++ +L + +PT IQ IP A
Sbjct: 1 MAADEEPDSPSGALQTAAE-EEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLAL 59
Query: 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
QG+D+IG AETGSGKT AF LPI+ LLE ++
Sbjct: 60 -QGRDIIGLAETGSGKTGAFALPILNALLETPQR 92
Score = 97 (39.2 bits), Expect = 4.7e-28, Sum P(3) = 4.7e-28
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ KL++ ++ + KD YL YIL+ ++FC++
Sbjct: 216 QRAALKNPVKCA-VSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCN 274
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + LL+ LG LH QM Q RL
Sbjct: 275 NTQRTALLLRNLGFTAIPLHGQMSQSKRL 303
Score = 37 (18.1 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 238 LLEEREKAAKMLEDKGEEAEK 258
L E EK + ED G++ +K
Sbjct: 414 LREHGEKKKRKREDAGDDDDK 434
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 299 (110.3 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 68/183 (37%), Positives = 109/183 (59%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEERE-- 243
L+K++ +K TPIQ+ IP QG D++ +A+TG+GKT AF LPI+ + +
Sbjct: 12 LLKAVKACGYKNLTPIQQEAIPVI-RQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAA 70
Query: 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMS 303
K++ D+ EK A +RALI+TPTRELA QV D++K ++ + ++ + GG
Sbjct: 71 KSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGK 130
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
Q ++LK +V+V TPGRL E ++ V+L + F VLDEADRM++ G +++
Sbjct: 131 MASQTKMLKQGLDVLVATPGRLLEHLA---LRNVDLSQVKFLVLDEADRMLDMGFLTDIE 187
Query: 364 SII 366
++
Sbjct: 188 KLL 190
Score = 62 (26.9 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 435 TLSERAGMRANVAI-----VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRT 489
T S+R AN + + ++ + K++++ EE K L ++ V+ +
Sbjct: 205 TFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLSELIGVNNWQQV 264
Query: 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
+VF + + ++ LK+ GI H Q AR K Q
Sbjct: 265 LVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQ 306
Score = 51 (23.0 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 394 RKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVN 428
+ K QTL+FSAT + D K L + LKS ++++
Sbjct: 194 KHKHQTLMFSATFS---DRVKSLANQLLKSPKTIS 225
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 173 (66.0 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 167 EAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGK 226
+AE+ +F + EL L P L++SI ++F +PTPIQ IP A +GKD+IG A+TGSGK
Sbjct: 117 DAEL--KFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHAL-EGKDIIGLAQTGSGK 173
Query: 227 TLAFGLPIMQRL 238
T AF +PI+Q L
Sbjct: 174 TAAFAIPILQSL 185
Score = 164 (62.8 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
AL++ PTREL Q+ D + + +R IVGGM Q R L +P V+V TPGR+
Sbjct: 194 ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIM 253
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371
+ + + L L + V+DEADR+++ L I+ ++P+
Sbjct: 254 DHLEHTKGF--SLKNLKYLVMDEADRLLDMDFGPALDKILKVIPI 296
Score = 88 (36.0 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 431 NSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTI 490
N IE L +RA + N V +++ A+ L +S + + K+ L ++L+ I
Sbjct: 309 NKIEKL-QRASLH-NPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSII 366
Query: 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARL 526
VF ++A + + L +ILG + LH Q+ Q RL
Sbjct: 367 VFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRL 402
Score = 42 (19.8 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 403 SATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAI--VDLTNMCVLAN 459
+A +A F HG L Q + LN ++ + +VA +D+ ++ V+ N
Sbjct: 378 TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVIN 436
Score = 37 (18.1 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSL 421
KR T +FSAT+ + KL+ SL
Sbjct: 297 KRTTYLFSATMTNKIE---KLQRASL 319
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 180 (68.4 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 37/106 (34%), Positives = 61/106 (57%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 92 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 151
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
L + + + L L + V+DEADR++ E+ I+ ++P
Sbjct: 152 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIP 195
Score = 143 (55.4 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 36/86 (41%), Positives = 52/86 (60%)
Query: 159 DAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIG 218
+A + V E E T + +L + +L ++ +L + +PT IQ IP A QG+D+IG
Sbjct: 11 EAPQTAVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIG 65
Query: 219 AAETGSGKTLAFGLPIMQRLLEEREK 244
AETGSGKT AF LPI+ LLE ++
Sbjct: 66 LAETGSGKTGAFALPILNALLETPQR 91
Score = 97 (39.2 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ KL++ ++ + KD YL YIL+ ++FC++
Sbjct: 215 QRAALKNPVKCA-VSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCN 273
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + LL+ LG LH QM Q RL
Sbjct: 274 NTQRTALLLRNLGFTAIPLHGQMSQSKRL 302
Score = 41 (19.5 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 408 LSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVA 447
L+ DF++ +HG K K+S + G+R VA
Sbjct: 408 LAFDFKELREHGE-KKKRSREDTGDNDDTEGAIGVRNKVA 446
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 179 (68.1 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
Identities = 37/106 (34%), Positives = 61/106 (57%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 119 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGR 178
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
L + + + L L + V+DEADR++ E+ I+ ++P
Sbjct: 179 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIP 222
Score = 144 (55.7 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGK 214
+ P + + V E E T + +L + +L ++ +L + +PT IQ IP A QG+
Sbjct: 34 DSPAEEPQPAVQEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGR 88
Query: 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
D+IG AETGSGKT AF LPI+ LLE ++
Sbjct: 89 DIIGLAETGSGKTGAFALPILNALLETPQR 118
Score = 97 (39.2 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ KL++ ++ + KD YL YIL+ ++FC++
Sbjct: 242 QRAALKNPVKCA-VSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCN 300
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + LL+ LG LH QM Q RL
Sbjct: 301 NTQRTALLLRNLGFTAIPLHGQMSQSKRL 329
>UNIPROTKB|F5GYL3 [details] [associations]
symbol:DDX24 "ATP-dependent RNA helicase DDX24"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL079302 GO:GO:0008026 HGNC:HGNC:13266 ChiTaRS:DDX24
IPI:IPI00911118 ProteinModelPortal:F5GYL3 SMR:F5GYL3
Ensembl:ENST00000544005 ArrayExpress:F5GYL3 Bgee:F5GYL3
Uniprot:F5GYL3
Length = 609
Score = 324 (119.1 bits), Expect = 5.0e-27, P = 5.0e-27
Identities = 78/203 (38%), Positives = 111/203 (54%)
Query: 240 EEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIV 299
E+ + L+DK + Y PK L L++TPTRELA+QV H+ VA+ ++ +V
Sbjct: 114 EQTGNLKQELDDKSATCKAY-PKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILV 172
Query: 300 GGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
GGMST+KQ+R+L RPE+VV TPGRLWEL+ HL L L V+DEADRM+E GHF
Sbjct: 173 GGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHF 232
Query: 360 RELQSIIDMLPMTNGSNKGQSEQTQNCVTV--SSLQR--KKRQTLVFSATIALSADFRKK 415
EL +++ML + + K Q+ +T+ + R K+ T T L +K
Sbjct: 233 AELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKI 292
Query: 416 LKHGSLKSKQSVNGLNSIETLSE 438
G K ++ETL+E
Sbjct: 293 GMRGKPKVIDLTRNEATVETLTE 315
Score = 228 (85.3 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455
KRQTLVFSAT+ L ++ H K + ++ ++ L ++ GMR ++DLT
Sbjct: 250 KRQTLVFSATLTLVHQAPARILHK--KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNE 307
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
L E+ I C+ ++KD YLYY L + GR++VF SI+ ++ +S LLK+L I T
Sbjct: 308 ATVETLTETKIHCETDEKDFYLYYFLMQY-PGRSLVFANSISCIKRLSGLLKVLDIMPLT 366
Query: 516 LHAQMQQRARLKLFSQ 531
LHA M Q+ RL+ Q
Sbjct: 367 LHACMHQKQRLRNLEQ 382
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 204 (76.9 bits), Expect = 5.4e-27, Sum P(4) = 5.4e-27
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ ++I PTRELA+QV + L + K VR++PI GG +Q R LK P ++VGT
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
PGR+ + ++ + + L + VLDEAD M+ G ++++I+ +P T+
Sbjct: 128 PGRILDHIN---RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 154 (59.3 bits), Expect = 5.4e-27, Sum P(4) = 5.4e-27
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L++S+ + F+E TPIQ IP A QGKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 237 RLLEERE 243
++ +E
Sbjct: 63 KVDTHKE 69
Score = 56 (24.8 bits), Expect = 5.4e-27, Sum P(4) = 5.4e-27
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+++ ++E +E+ K L +L + IVF + + +S L + G +H +
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDL 274
Query: 521 QQRARLKL 528
Q R+ +
Sbjct: 275 TQAKRMSV 282
Score = 38 (18.4 bits), Expect = 5.4e-27, Sum P(4) = 5.4e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 398 QTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKE 209
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 204 (76.9 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ ++I PTRELA+QV + L + K VR++PI GG +Q R LK P ++VGT
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
PGR+ + ++ + + L + VLDEAD M+ G ++++I+ +P T+
Sbjct: 128 PGRILDHIN---RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 154 (59.3 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L++S+ + F+E TPIQ IP A QGKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 237 RLLEERE 243
++ +E
Sbjct: 63 KVDTHKE 69
Score = 56 (24.8 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+++ ++E +E+ K L +L + IVF + + +S L + G +H +
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDL 274
Query: 521 QQRARLKL 528
Q R+ +
Sbjct: 275 TQAKRMSV 282
Score = 38 (18.4 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 398 QTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKE 209
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 204 (76.9 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ ++I PTRELA+QV + L + K VR++PI GG +Q R LK P ++VGT
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
PGR+ + ++ + + L + VLDEAD M+ G ++++I+ +P T+
Sbjct: 128 PGRILDHIN---RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 154 (59.3 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L++S+ + F+E TPIQ IP A QGKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 237 RLLEERE 243
++ +E
Sbjct: 63 KVDTHKE 69
Score = 56 (24.8 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+++ ++E +E+ K L +L + IVF + + +S L + G +H +
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDL 274
Query: 521 QQRARLKL 528
Q R+ +
Sbjct: 275 TQAKRMSV 282
Score = 38 (18.4 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 398 QTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKE 209
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 204 (76.9 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ ++I PTRELA+QV + L + K VR++PI GG +Q R LK P ++VGT
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
PGR+ + ++ + + L + VLDEAD M+ G ++++I+ +P T+
Sbjct: 128 PGRILDHIN---RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 154 (59.3 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L++S+ + F+E TPIQ IP A QGKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 237 RLLEERE 243
++ +E
Sbjct: 63 KVDTHKE 69
Score = 56 (24.8 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+++ ++E +E+ K L +L + IVF + + +S L + G +H +
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDL 274
Query: 521 QQRARLKL 528
Q R+ +
Sbjct: 275 TQAKRMSV 282
Score = 38 (18.4 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 398 QTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKE 209
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 204 (76.9 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ ++I PTRELA+QV + L + K VR++PI GG +Q R LK P ++VGT
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
PGR+ + ++ + + L + VLDEAD M+ G ++++I+ +P T+
Sbjct: 128 PGRILDHIN---RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 154 (59.3 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L++S+ + F+E TPIQ IP A QGKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 237 RLLEERE 243
++ +E
Sbjct: 63 KVDTHKE 69
Score = 56 (24.8 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+++ ++E +E+ K L +L + IVF + + +S L + G +H +
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDL 274
Query: 521 QQRARLKL 528
Q R+ +
Sbjct: 275 TQAKRMSV 282
Score = 38 (18.4 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 398 QTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKE 209
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 204 (76.9 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ ++I PTRELA+QV + L + K VR++PI GG +Q R LK P ++VGT
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
PGR+ + ++ + + L + VLDEAD M+ G ++++I+ +P T+
Sbjct: 128 PGRILDHIN---RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 154 (59.3 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L++S+ + F+E TPIQ IP A QGKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 237 RLLEERE 243
++ +E
Sbjct: 63 KVDTHKE 69
Score = 56 (24.8 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+++ ++E +E+ K L +L + IVF + + +S L + G +H +
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDL 274
Query: 521 QQRARLKL 528
Q R+ +
Sbjct: 275 TQAKRMSV 282
Score = 38 (18.4 bits), Expect = 5.7e-27, Sum P(4) = 5.7e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 398 QTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKE 209
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 204 (76.9 bits), Expect = 6.1e-27, Sum P(4) = 6.1e-27
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ ++I PTRELA+QV + L + K VR++PI GG +Q R LK P ++VGT
Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
PGR+ + ++ + + L + VLDEAD M+ G ++++I+ +P T+
Sbjct: 128 PGRILDHIN---RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 154 (59.3 bits), Expect = 6.1e-27, Sum P(4) = 6.1e-27
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L++S+ + F+E TPIQ IP A QGKD+IG A+TG+GKT AFGLP++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHAL-QGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 237 RLLEERE 243
++ +E
Sbjct: 63 KVDTHKE 69
Score = 56 (24.8 bits), Expect = 6.1e-27, Sum P(4) = 6.1e-27
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+++ ++E +E+ K L +L + IVF + + +S L + G +H +
Sbjct: 215 IQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDL 274
Query: 521 QQRARLKL 528
Q R+ +
Sbjct: 275 TQAKRMSV 282
Score = 38 (18.4 bits), Expect = 6.1e-27, Sum P(4) = 6.1e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 398 QTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKE 209
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 190 (71.9 bits), Expect = 6.4e-27, Sum P(4) = 6.4e-27
Identities = 40/104 (38%), Positives = 61/104 (58%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
A+I+TPTRELA+Q+ + + +NV ++GG+ Q +L RP ++V TPGRL
Sbjct: 75 AVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLA 134
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
++ G K + L F VLDEADR++ E+ SI++ LP
Sbjct: 135 SHLNNGLK--IALKFCKFLVLDEADRLLGEDFELEIASILEHLP 176
Score = 122 (48.0 bits), Expect = 6.4e-27, Sum P(4) = 6.4e-27
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L+ + +L FK P+ IQ IP +G+D+I +A+TGSGKT +F +PI+
Sbjct: 6 FEELGLTTWLVANCKQLGFKAPSNIQANTIPEIL-KGRDIIASAKTGSGKTASFAIPILN 64
Query: 237 RLLEE 241
+L E+
Sbjct: 65 QLSED 69
Score = 95 (38.5 bits), Expect = 6.4e-27, Sum P(4) = 6.4e-27
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +I KD YL YIL H IVF + A+ + +L L I +LH+ +
Sbjct: 220 LKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFL 279
Query: 521 QQRARL 526
Q++RL
Sbjct: 280 DQKSRL 285
Score = 46 (21.3 bits), Expect = 6.4e-27, Sum P(4) = 6.4e-27
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 395 KKRQTLVFSATI 406
+KRQTL+FSAT+
Sbjct: 179 EKRQTLLFSATM 190
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 180 (68.4 bits), Expect = 8.5e-27, Sum P(3) = 8.5e-27
Identities = 37/106 (34%), Positives = 61/106 (57%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L AL++TPTRELA Q+++ + + I V+ IVGG+ + Q L +P +V+ TPGR
Sbjct: 95 LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGR 154
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
L + + + L L + V+DEADR++ E+ I+ ++P
Sbjct: 155 LIDHLENTKGF--NLRALKYLVMDEADRILNMDFETEVDKILKVIP 198
Score = 138 (53.6 bits), Expect = 8.5e-27, Sum P(3) = 8.5e-27
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGL 232
E + +L + +L ++ +L + +PT IQ IP A QG+D+IG AETGSGKT AF L
Sbjct: 24 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFAL 82
Query: 233 PIMQRLLEEREK 244
PI+ LLE ++
Sbjct: 83 PILNALLETPQR 94
Score = 97 (39.2 bits), Expect = 8.5e-27, Sum P(3) = 8.5e-27
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA ++ V +++ KL++ ++ + KD YL YIL+ ++FC++
Sbjct: 218 QRAALKNPVKCA-VSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCN 276
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + LL+ LG LH QM Q RL
Sbjct: 277 NTQRTALLLRNLGFTAIPLHGQMSQSKRL 305
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 300 (110.7 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 74/193 (38%), Positives = 110/193 (56%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+++L L L+ ++ L PTPIQ+ IP QGKDV+ A+TG+GKT AFGLP++Q
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVL-QGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
R +E+ ++ A +RAL++ PTRELA QV D L+ AKG +++V
Sbjct: 67 RFIEQ-------------PWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIV 113
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG S + Q L+ ++++ TPGRL L K L L + VLDEADRM++
Sbjct: 114 AVYGGTSMKVQLNHLRGGVDILIATPGRL--LDHAHVKSLF-LGKVEVLVLDEADRMLDM 170
Query: 357 GHFRELQSIIDML 369
G +LQ ++ L
Sbjct: 171 GFMPDLQRVLRRL 183
Score = 43 (20.2 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKI 508
V +T A +++ ++ K L Y++ + +VF + ++ LK+
Sbjct: 214 VQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKL 273
Query: 509 LGIDVWTLHAQMQQRARLK 527
GI +++ Q AR K
Sbjct: 274 DGIKAVSINGDKSQGARQK 292
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 300 (110.7 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 74/193 (38%), Positives = 110/193 (56%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+++L L L+ ++ L PTPIQ+ IP QGKDV+ A+TG+GKT AFGLP++Q
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVL-QGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
R +E+ ++ A +RAL++ PTRELA QV D L+ AKG +++V
Sbjct: 67 RFIEQ-------------PWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIV 113
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG S + Q L+ ++++ TPGRL L K L L + VLDEADRM++
Sbjct: 114 AVYGGTSMKVQLNHLRGGVDILIATPGRL--LDHAHVKSLF-LGKVEVLVLDEADRMLDM 170
Query: 357 GHFRELQSIIDML 369
G +LQ ++ L
Sbjct: 171 GFMPDLQRVLRRL 183
Score = 43 (20.2 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKI 508
V +T A +++ ++ K L Y++ + +VF + ++ LK+
Sbjct: 214 VQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKL 273
Query: 509 LGIDVWTLHAQMQQRARLK 527
GI +++ Q AR K
Sbjct: 274 DGIKAVSINGDKSQGARQK 292
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 286 (105.7 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 72/196 (36%), Positives = 108/196 (55%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ EL L L+ + L++ +PTPIQ IP+ G+D+I A TGSGKT F LP++Q
Sbjct: 10 FTELGLITPLLARLAELEYHQPTPIQARAIPSV-FAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN--VR 294
+L E+ +K KG + L++ PTRELA QV D +K A N ++
Sbjct: 69 KLREDISSGSK--NSKGN---------FVTGLVLVPTRELAKQVADSIKSYAVHFNGEIK 117
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
+ + GG+S Q L+ +++V TPGRL +L+S L ++ TL VLDEADRM+
Sbjct: 118 TLAVFGGVSVNIQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTL---VLDEADRML 174
Query: 355 ENGHFRELQSIIDMLP 370
G EL +++ + P
Sbjct: 175 SLGFTEELTALLALTP 190
Score = 53 (23.7 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 383 TQNCVTVSSLQRKKRQTLVFSAT 405
T+ + +L KK+QTL+FSAT
Sbjct: 179 TEELTALLALTPKKKQTLLFSAT 201
Score = 43 (20.2 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 13/71 (18%), Positives = 28/71 (39%)
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
A+ L + + +K A L +++ + ++F + H++ L GI H
Sbjct: 227 ASTLVQRVFTVNKGEKTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFH 286
Query: 518 AQMQQRARLKL 528
Q R ++
Sbjct: 287 GDKGQSERSRV 297
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 219 (82.2 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 45/115 (39%), Positives = 73/115 (63%)
Query: 257 EKYAPKG-HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARP 315
EK P+ +++A++I PTRELA+QV++ L + + RV+PI GG +Q R LK P
Sbjct: 63 EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNP 122
Query: 316 EVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
++VGTPGRL + ++ + + L T++ VLDEAD M+ G +++SI+ +P
Sbjct: 123 HIIVGTPGRLLDHIN---RRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVP 174
Score = 138 (53.6 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ + +L L K+I R+ F+E TPIQ IP KDVIG A+TG+GKT AFG+P+++
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGL-ANKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 237 RLLEE 241
++ E
Sbjct: 64 KINPE 68
Score = 52 (23.4 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 19/94 (20%), Positives = 38/94 (40%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
I+ ++ER V M V + +++ ++E E K L +L + IVF
Sbjct: 190 IKRIAERFMTNPEHVKVKAKEMTV--SNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVF 247
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + ++ L + G +H + Q R+
Sbjct: 248 GRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRM 281
Score = 39 (18.8 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 396 KRQTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
+ QTL+FSAT+ ++ F +H +K+K+
Sbjct: 176 EHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKE 210
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 285 (105.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 69/195 (35%), Positives = 114/195 (58%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+++ L+L ++ +I L + +PT IQ+ IP GKD+I AA+TG+GKT +F LP++
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVL-AGKDIIAAAQTGTGKTASFVLPLL 60
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
++L + ++ K L K +RALI+ PTRELA+QV + AK +++
Sbjct: 61 EQLNSQYKETGKKLRAK-----------RIRALILVPTRELAVQVEASISQYAKYLDISS 109
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
+ + GG+ ++Q++ L +++V TPGRL ++ H EL L VLDEADRM++
Sbjct: 110 MAMYGGVDAQEQKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDML---VLDEADRMLD 166
Query: 356 NGHFRELQSIIDMLP 370
G ++ II+ LP
Sbjct: 167 MGFIDDINKIIERLP 181
Score = 59 (25.8 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 460 KLEESFIECKEEDKDAYLYYILSVHGQGRTIVFC-TSIAALRHISSLLKILGIDVWTLHA 518
K+E+ + + +K A L +I++ + ++F T A + +S L K GI ++H+
Sbjct: 222 KIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKHGAAKLVSQLEK-RGIVAESIHS 280
Query: 519 QMQQRARLKLFS 530
Q R K+ +
Sbjct: 281 GRAQDIREKILN 292
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 323 (118.8 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 83/234 (35%), Positives = 136/234 (58%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+I +W + L P +++ I + +KEPTPIQ+ IP Q +D+IG AETGSGKT
Sbjct: 385 KIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTA 443
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
AF +P++ + K+ D+ EE+++ P A+I+ PTRELA Q+ +
Sbjct: 444 AFLIPLLVWITT----LPKI--DRIEESDQ-GPY----AIILAPTRELAQQIEEETIKFG 492
Query: 289 KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348
K + +R V ++GG+S E Q L+ E+V+ TPGRL +++ ++LV L ++ VLD
Sbjct: 493 KPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLEN--RYLV-LSRCTYVVLD 549
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGS-NKGQSEQTQNCVT-VSSLQRKKRQTL 400
EADRMI+ G ++Q I++ +P++N + ++E + + S + K RQTL
Sbjct: 550 EADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTL 603
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 182 (69.1 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 43/135 (31%), Positives = 70/135 (51%)
Query: 260 APKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVV 319
AP+G L L + PTRELA Q+ D + I V+ +VGG+ + Q L +P VVV
Sbjct: 184 APQG-LFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVV 242
Query: 320 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQ 379
G+PGR+ + + L ++ +F++DEADR+ E+ +I+ ++P +
Sbjct: 243 GSPGRVLHHLEHTKGF--NLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFS 300
Query: 380 SEQTQNCVTVSSLQR 394
+ T V+ LQR
Sbjct: 301 ATMTSK---VAKLQR 312
Score = 152 (58.6 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 32/83 (38%), Positives = 52/83 (62%)
Query: 158 DDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVI 217
++ ++ E E E + L +HP ++ + +L F +P IQ+ IP A +G+D+I
Sbjct: 102 NNTNQKKSEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWAL-KGRDII 160
Query: 218 GAAETGSGKTLAFGLPIMQRLLE 240
G A+TGSGKT AF +P++Q+LLE
Sbjct: 161 GLAQTGSGKTAAFVIPVLQKLLE 183
Score = 82 (33.9 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
+RA + N V + + + L + ++ + KD YL YIL+ TI+F ++ A
Sbjct: 311 QRASL-VNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCA 369
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ I+ +L+ LG ++ M Q RL
Sbjct: 370 SSTKIAMMLRNLGFGAIPINGDMDQGKRL 398
Score = 42 (19.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 395 KKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETL 436
K+R T +FSAT+ KL+ SL + V + +T+
Sbjct: 292 KERNTYLFSATMTSKV---AKLQRASLVNPVKVQVASKYQTV 330
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 212 (79.7 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 48/130 (36%), Positives = 76/130 (58%)
Query: 245 AAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMST 304
AA ML E+ P G + LI+TPTRELALQ+ + + +N++V +VGG
Sbjct: 56 AAPMLTQWSED-----PFG-IFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDF 109
Query: 305 EKQERLLKARPEVVVGTPGRLWE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
+Q L+ +P V+ TPGRL + +++ GE+ + L + + VLDEADR++ N +LQ
Sbjct: 110 VQQTLALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQ 169
Query: 364 SIIDMLPMTN 373
D+LP ++
Sbjct: 170 RCFDVLPTSD 179
Score = 132 (51.5 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
++N+L + L +S+ ++ PT IQ ACIPA +G D IG A+TGSGKT+AF P++
Sbjct: 2 SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAIL-KGHDCIGGAKTGSGKTIAFAAPML 60
Query: 236 QRLLEE 241
+ E+
Sbjct: 61 TQWSED 66
Score = 60 (26.2 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 18/79 (22%), Positives = 35/79 (44%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG--QGRTIVFCTSIAALRHISSLL 506
V+ + + + L+ S++ K+AYL IL + ++F + +L
Sbjct: 214 VETVDKVAIPSTLQISYVFVPSYVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRML 273
Query: 507 KILGIDVWTLHAQMQQRAR 525
+ L V +LH++M Q R
Sbjct: 274 RKLDFRVASLHSEMPQSER 292
Score = 48 (22.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 375 SNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
SN S+ Q C V KRQTL+F+ATI
Sbjct: 161 SNSFGSD-LQRCFDVLPTS-DKRQTLLFTATI 190
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 210 (79.0 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 42/115 (36%), Positives = 73/115 (63%)
Query: 257 EKYAPKG-HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARP 315
EK P+ +++A++I PTRELA+QV++ L + + +V+PI GG +Q R LK P
Sbjct: 63 EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 122
Query: 316 EVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
++VGTPGRL + ++ + + L+ ++ V+DEAD M+ G +++SI+ +P
Sbjct: 123 NIIVGTPGRLLDHIN---RRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVP 174
Score = 144 (55.7 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ + L LMK+I R+ F+E TPIQ IP KDVIG A+TG+GKT AFG+P+++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGL-SNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 237 RLLEE 241
++ E
Sbjct: 64 KINPE 68
Score = 53 (23.7 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 19/94 (20%), Positives = 39/94 (41%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
I+ ++ER V M V + +++ ++E +E K L +L + IVF
Sbjct: 190 IKRIAERFMTEPEHVKVKAKEMTV--SNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVF 247
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARL 526
+ + ++ L + G +H + Q R+
Sbjct: 248 GRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRM 281
Score = 40 (19.1 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 396 KRQTLVFSATIA-----LSADFRKKLKHGSLKSKQ 425
+ QTL+FSAT+ ++ F + +H +K+K+
Sbjct: 176 EHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKE 210
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 195 (73.7 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 43/105 (40%), Positives = 61/105 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R I+ PTRELA+Q + +A ++ +VGG S +QE +LK RP+V++ TPGR
Sbjct: 371 RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRF 430
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ M V+ TL VLDEADRM+E+G EL I+ +P
Sbjct: 431 IDHMRNSASFTVD--TLEILVLDEADRMLEDGFADELNEILTTIP 473
Score = 151 (58.2 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 161 EEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAA 220
EE+ +A ++ ++ E L +++ + + F PTPIQ+ IP A GKD++G+A
Sbjct: 284 EEKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVAL-LGKDIVGSA 342
Query: 221 ETGSGKTLAFGLPIMQRLL 239
TGSGKT AF +PI++RLL
Sbjct: 343 VTGSGKTAAFVVPILERLL 361
Score = 74 (31.1 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
Identities = 30/113 (26%), Positives = 48/113 (42%)
Query: 422 KSKQ----SVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK--EEDKD- 474
KS+Q S +S++ L R G+ V ++ T ++E F+ + EDK
Sbjct: 474 KSRQTMLFSATMTDSVDKLI-RVGLNRPVRLMVDTKKNTAVTLVQE-FVRLRPGREDKRL 531
Query: 475 AYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
YL ++ GR IVF + + +LG+ LH M Q R+K
Sbjct: 532 GYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIK 584
Score = 49 (22.3 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 395 KKRQTLVFSATIALSAD 411
K RQT++FSAT+ S D
Sbjct: 474 KSRQTMLFSATMTDSVD 490
Score = 39 (18.8 bits), Expect = 9.9e-15, Sum P(3) = 9.9e-15
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252
G+D G + G+ K + I++R E+REK A+ + K
Sbjct: 127 GED--GEKKNGNKKAVDID-DIIERRREKREKKAEKEKKK 163
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 180 (68.4 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 49/129 (37%), Positives = 70/129 (54%)
Query: 245 AAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMST 304
A +LE EE P H AL++TPT ELA Q+++ + + VRV + GG
Sbjct: 62 ALPILERLSEE-----PVSHF-ALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQ 115
Query: 305 EKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 364
+ + L RP +VV PGRL + ++G + + L + V+DEADRM+ NG F E S
Sbjct: 116 MVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFD--NLKYLVVDEADRML-NGDFDESLS 172
Query: 365 IIDM-LPMT 372
II+ LP T
Sbjct: 173 IIERCLPKT 181
Score = 169 (64.5 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGL 232
E + + L L P L+K + +L K TPIQ+ CIPA G+D IGAA+TGSGKT AF L
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAIL-AGQDCIGAAKTGSGKTFAFAL 63
Query: 233 PIMQRLLEE 241
PI++RL EE
Sbjct: 64 PILERLSEE 72
Score = 61 (26.5 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQ----GRTIVFCTSIAALRHISSLLKILGIDVWTL 516
L++ ++ C + D+D L L + + ++F + + +S LK + ID L
Sbjct: 222 LDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCL 281
Query: 517 HAQMQQRARLKLFSQ 531
H M+Q+ R+ S+
Sbjct: 282 HGFMRQKERVAALSR 296
Score = 40 (19.1 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 16/83 (19%), Positives = 38/83 (45%)
Query: 381 EQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERA 440
E+ +N V K+ + S T+ + + HG ++ K+ V L+ ++ R
Sbjct: 247 EENENA-NVMIFTNTKKYCQLLSMTLK-NMEIDNVCLHGFMRQKERVAALSRFKSNQIRT 304
Query: 441 GMRANVAI--VDLTNMCVLANKL 461
+ +VA +D+ ++ ++ N +
Sbjct: 305 LIATDVAARGLDIPSVELVMNHM 327
Score = 39 (18.8 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 395 KKRQTLVFSATIALSADFRKKLKHGSLKSK----QSVNGLNSIETLSER 439
K RQ L FSAT+ DF K+ + S + + ++ETL +R
Sbjct: 180 KTRQNLFFSATMK---DFIKESSIFPIASDCFEWSQDSDVATVETLDQR 225
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 178 (67.7 bits), Expect = 4.8e-26, Sum P(4) = 4.8e-26
Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + +++TPTRELA+Q+ + + +N+RV IVGG S +Q L+ +P ++
Sbjct: 68 PSG-MFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIA 126
Query: 321 TPGRL-WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
TPGRL +MS G+ + L + VLDEAD ++ + L + I LP
Sbjct: 127 TPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALP 177
Score = 134 (52.2 bits), Expect = 4.8e-26, Sum P(4) = 4.8e-26
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ L L L +S+ ++ +PT IQKACIP +G+D IG A+TGSGKT+AF P++
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKIL-EGRDCIGGAKTGSGKTIAFAGPMLT 62
Query: 237 RLLEE 241
+ E+
Sbjct: 63 KWSED 67
Score = 79 (32.9 bits), Expect = 4.8e-26, Sum P(4) = 4.8e-26
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG-QGRT-IVFCTSIAALRHISSLL 506
V+ + + + L+ +I E K+AYLY +L+ + +T I+F + L
Sbjct: 215 VESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTL 274
Query: 507 KILGIDVWTLHAQMQQRAR 525
K L + V +LH+QM Q+ R
Sbjct: 275 KQLEVRVASLHSQMPQQER 293
Score = 50 (22.7 bits), Expect = 4.8e-26, Sum P(4) = 4.8e-26
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 389 VSSLQRK-KRQTLVFSATI 406
+S+L K KRQTL+F+ATI
Sbjct: 173 ISALPPKDKRQTLLFTATI 191
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 318 (117.0 bits), Expect = 4.9e-26, P = 4.9e-26
Identities = 77/232 (33%), Positives = 130/232 (56%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W E + +++ + + EPTPIQ+ IP Q +DVIG AETGSGKT AF LP++
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGL-QNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+ KM + + YA +I+ PTRELA Q+ + K + ++ V
Sbjct: 362 WITS----LPKMERQEHRDLGPYA-------IIMAPTRELAQQIEEETNKFGKLLGIKTV 410
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
++GG S E Q L+ EVV+ TPGRL +++ ++L+ L+ ++ +LDEADRM++
Sbjct: 411 SVIGGASREDQGMKLRMGVEVVIATPGRLLDVLEN--RYLL-LNQCTYVILDEADRMLDM 467
Query: 357 GHFRELQSIIDMLPMTN-GSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407
G ++Q +++ +P TN + + + + + S + K RQT++F+AT++
Sbjct: 468 GFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMS 519
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 202 (76.2 bits), Expect = 7.9e-26, Sum P(4) = 7.9e-26
Identities = 46/105 (43%), Positives = 64/105 (60%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
RALI+TPTRELALQ K + K +R I+GG S + Q L P++++GTPGRL
Sbjct: 150 RALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRL 209
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
++ E +L +L ++ + V DEADR+ E G +LQ II LP
Sbjct: 210 MHVIQ--EMNL-KLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLP 251
Score = 121 (47.7 bits), Expect = 7.9e-26, Sum P(4) = 7.9e-26
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 188 KSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
K I + +K PTPIQ+ IP GKDV+ A TGSGKT AF +P+ ++L
Sbjct: 91 KGIMKKGYKVPTPIQRKTIPVIL-DGKDVVAMARTGSGKTAAFLVPLFEKL 140
Score = 90 (36.7 bits), Expect = 7.9e-26, Sum P(4) = 7.9e-26
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 439 RAGMRANVAI-VDLTNMCVLANKLEESFIECKEEDKDAYLYYILS--VHGQGRTIVFCTS 495
RAG+ V I +D+ L+ +L+ SF + +DK A L ++L V Q +T+VF +
Sbjct: 272 RAGLTEPVLIRLDVDTK--LSEQLKLSFFSLRLDDKPALLLHLLRNVVKPQEQTVVFVAT 329
Query: 496 IAALRHISSLLKILGIDVWTLHAQMQQRAR 525
+ ++ LL G+D +++ + Q AR
Sbjct: 330 KHHVEYLKELLSAEGVDCSCIYSALDQTAR 359
Score = 42 (19.8 bits), Expect = 7.9e-26, Sum P(4) = 7.9e-26
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 397 RQTLVFSATIA-LSADFRK 414
RQTL+FSAT+ L +F +
Sbjct: 254 RQTLLFSATLPKLIVEFAR 272
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 305 (112.4 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 71/192 (36%), Positives = 116/192 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + + ++ S+ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ ++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 356 NGHFRELQSIID 367
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 183 GELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELD 226
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRTIVFCTSIAALRHISSLLK 507
V + V+ + +E+ I +EE K L +L + + G I+F + H LLK
Sbjct: 581 VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF---VDKQEHADGLLK 637
Query: 508 IL---GIDVWTLHAQMQQRAR 525
L +LH + Q R
Sbjct: 638 DLMRASYPCMSLHGGIDQYDR 658
Score = 40 (19.1 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 305 (112.4 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 71/192 (36%), Positives = 116/192 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + + ++ S+ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ ++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 356 NGHFRELQSIID 367
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 183 GELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELD 226
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRTIVFCTSIAALRHISSLLK 507
V + V+ + +E+ I +EE K L +L + + G I+F + H LLK
Sbjct: 581 VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF---VDKQEHADGLLK 637
Query: 508 IL---GIDVWTLHAQMQQRAR 525
L +LH + Q R
Sbjct: 638 DLMRASYPCMSLHGGIDQYDR 658
Score = 40 (19.1 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 305 (112.4 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 71/192 (36%), Positives = 116/192 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + + ++ S+ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ ++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 356 NGHFRELQSIID 367
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 183 GELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELD 226
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRTIVFCTSIAALRHISSLLK 507
V + V+ + +E+ I +EE K L +L + + G I+F + H LLK
Sbjct: 581 VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF---VDKQEHADGLLK 637
Query: 508 IL---GIDVWTLHAQMQQRAR 525
L +LH + Q R
Sbjct: 638 DLMRASYPCMSLHGGIDQYDR 658
Score = 40 (19.1 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 305 (112.4 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 71/192 (36%), Positives = 116/192 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + + ++ S+ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ ++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 356 NGHFRELQSIID 367
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 183 GELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEDEELD 226
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRTIVFCTSIAALRHISSLLK 507
V + V+ + +E+ I +EE K L +L + + G I+F + H LLK
Sbjct: 581 VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF---VDKQEHADGLLK 637
Query: 508 IL---GIDVWTLHAQMQQRAR 525
L +LH + Q R
Sbjct: 638 DLMRASYPCMSLHGGIDQYDR 658
Score = 40 (19.1 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 305 (112.4 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 71/192 (36%), Positives = 116/192 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + + ++ S+ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ ++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 356 NGHFRELQSIID 367
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 183 GELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEDEELD 226
Score = 45 (20.9 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRTIVFCTSIAALRHISSLLK 507
V + V+ + +E+ I +EE K L +L + + G I+F + H LLK
Sbjct: 581 VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF---VDKQEHADGLLK 637
Query: 508 IL---GIDVWTLHAQMQQRAR 525
L +LH + Q R
Sbjct: 638 DLMRASYPCMSLHGGIDQYDR 658
Score = 40 (19.1 bits), Expect = 8.0e-26, Sum P(4) = 8.0e-26
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 319 (117.4 bits), Expect = 8.6e-26, P = 8.6e-26
Identities = 86/243 (35%), Positives = 131/243 (53%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W E L L+K+I + ++++PTPIQ IP A +D+IG AETGSGKT AF LP++
Sbjct: 700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEM-RDLIGIAETGSGKTAAFVLPMLS 758
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+ K L E + P AL+I P+RELA+Q+ + A + R V
Sbjct: 759 YV--------KQLPPLTYETSQDGPY----ALVIAPSRELAIQIYEETNKFASYCSCRTV 806
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+VGG + E Q L+ E+V+GTPGRL + + EK L+ ++ +LDEADRM++
Sbjct: 807 AVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL---EKAYTVLNQCNYVILDEADRMMDM 863
Query: 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD--FRK 414
G + I+D +P +N ++ + Q + + R R T +FSAT+ S + RK
Sbjct: 864 GFEDTVHYILDKIPTSNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRK 923
Query: 415 KLK 417
L+
Sbjct: 924 YLR 926
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 319 (117.4 bits), Expect = 8.6e-26, P = 8.6e-26
Identities = 86/243 (35%), Positives = 131/243 (53%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W E L L+K+I + ++++PTPIQ IP A +D+IG AETGSGKT AF LP++
Sbjct: 700 WEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEM-RDLIGIAETGSGKTAAFVLPMLS 758
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+ K L E + P AL+I P+RELA+Q+ + A + R V
Sbjct: 759 YV--------KQLPPLTYETSQDGPY----ALVIAPSRELAIQIYEETNKFASYCSCRTV 806
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+VGG + E Q L+ E+V+GTPGRL + + EK L+ ++ +LDEADRM++
Sbjct: 807 AVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL---EKAYTVLNQCNYVILDEADRMMDM 863
Query: 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD--FRK 414
G + I+D +P +N ++ + Q + + R R T +FSAT+ S + RK
Sbjct: 864 GFEDTVHYILDKIPTSNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRK 923
Query: 415 KLK 417
L+
Sbjct: 924 YLR 926
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 174 (66.3 bits), Expect = 9.7e-26, Sum P(4) = 9.7e-26
Identities = 37/83 (44%), Positives = 54/83 (65%)
Query: 161 EEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAA 220
+ E NE E F++++EL L P L+++ L + +PTPIQ IP A +G D+IG A
Sbjct: 70 QNENTNEDE---SFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPAL-EGHDIIGLA 125
Query: 221 ETGSGKTLAFGLPIMQRLLEERE 243
+TGSGKT AF +PI+ RL ++E
Sbjct: 126 QTGSGKTAAFAIPILNRLWHDQE 148
Score = 161 (61.7 bits), Expect = 9.7e-26, Sum P(4) = 9.7e-26
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
A I+ PTRELA Q+ + + + VR IVGGM+ Q R L +P +++ TPGRL
Sbjct: 152 ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLM 211
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ + + L L F V+DEADR+++ L I+ ++P
Sbjct: 212 DHLENTKGF--SLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 253
Score = 65 (27.9 bits), Expect = 9.7e-26, Sum P(4) = 9.7e-26
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 473 KDAYLYYILSVHGQGRT-IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARL 526
K+ YL Y+L+ G+T I+F + A +S L +L LH + Q R+
Sbjct: 308 KNTYLIYLLNEF-IGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRM 361
Score = 44 (20.5 bits), Expect = 9.7e-26, Sum P(4) = 9.7e-26
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 395 KKRQTLVFSATIALSADFRKKLKHGSLKS--KQSV-NGLNSIETL 436
++R T +FSAT+ D KL+ SL + K +V N +++TL
Sbjct: 255 QERTTYLFSATMTSKID---KLQRASLTNPVKCAVSNKYQTVDTL 296
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 305 (112.4 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 71/192 (36%), Positives = 116/192 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + + ++ S+ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ ++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 356 NGHFRELQSIID 367
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 45 (20.9 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRTIVFCTSIAALRHISSLLK 507
V + V+ + +E+ I +EE K L +L + + G I+F + H LLK
Sbjct: 581 VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF---VDKQEHADGLLK 637
Query: 508 IL---GIDVWTLHAQMQQRAR 525
L +LH + Q R
Sbjct: 638 DLMRASYPCMSLHGGIDQYDR 658
Score = 44 (20.5 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 183 GELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEVEGEELD 226
Score = 40 (19.1 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 293 (108.2 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 69/194 (35%), Positives = 112/194 (57%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ +L L L+K++ ++ P+PIQ IPA G+DV+ AA+TG+GKT F LP++Q
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVI-SGRDVMAAAQTGTGKTAGFTLPLLQ 66
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
RL KG + ++RALI+TPTRELA Q+++ ++ K +N+ +
Sbjct: 67 RLSSS----------KGNKVSS----NNVRALILTPTRELAAQISESIEVYGKYLNLHSM 112
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG+ Q L+ +V+V TPGRL +L + + V+ L F+LDEADRM++
Sbjct: 113 VVFGGVKINPQIARLRQGVDVLVATPGRLLDLYN---QRAVKFSQLEVFILDEADRMLDM 169
Query: 357 GHFRELQSIIDMLP 370
G R+++ ++ LP
Sbjct: 170 GFIRDIKKLMTALP 183
Score = 53 (23.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 24/116 (20%), Positives = 47/116 (40%)
Query: 414 KKLKHGSLKSKQSV--NGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE 471
KKL K +Q++ + S E + GM N + + A K+ + ++
Sbjct: 176 KKLMTALPKDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKK 235
Query: 472 DKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
K A L +++ + + +VF + ++ L+ G+ +H Q AR K
Sbjct: 236 RKPAVLTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTK 291
Score = 39 (18.8 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 395 KKRQTLVFSATIA 407
K RQ L+FSAT +
Sbjct: 184 KDRQNLLFSATFS 196
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 305 (112.4 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 71/192 (36%), Positives = 116/192 (60%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + + ++ S+ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ ++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RV
Sbjct: 432 RHIMDQRS-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V + GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD 536
Query: 356 NGHFRELQSIID 367
G ++ I+D
Sbjct: 537 MGFEPQVMRIVD 548
Score = 45 (20.9 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRTIVFCTSIAALRHISSLLK 507
V + V+ + +E+ I +EE K L +L + + G I+F + H LLK
Sbjct: 581 VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF---VDKQEHADGLLK 637
Query: 508 IL---GIDVWTLHAQMQQRAR 525
L +LH + Q R
Sbjct: 638 DLMRASYPCMSLHGGIDQYDR 658
Score = 43 (20.2 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 183 GELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGTEMEDEELD 226
Score = 40 (19.1 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRIL 575
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 304 (112.1 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 86/260 (33%), Positives = 138/260 (53%)
Query: 184 PLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEERE 243
P ++++I +++ TPIQ+ IPA +G+DV+ +A+TG+GKT AF LPI+Q
Sbjct: 10 PEILRAISDCGYQKMTPIQQQAIPAI-RRGQDVLASAQTGTGKTAAFALPILQ------- 61
Query: 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMS 303
KM+E+ E K + R LI+TPTRELA QV ++++ +K +N V+ I GG+
Sbjct: 62 ---KMVENPSETL-----KSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVK 113
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
E Q + LK +++V TPGRL E ++ + L ++ F VLDEADRM++ G ++Q
Sbjct: 114 VETQAQKLKRGADIIVATPGRLLEHLTACN---LSLSSVDFLVLDEADRMLDMGFSADIQ 170
Query: 364 SIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKS 423
I+ + NK + + T SS +K ++ + +SAD + +
Sbjct: 171 KILQAV------NK-KRQNLLFSATFSSAVKKLANEMMIKPQV-ISADKQNTTADTVSQV 222
Query: 424 KQSVNGLNSIETLSERAGMR 443
V E LSE G +
Sbjct: 223 VYPVEQRRKRELLSELIGKK 242
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 185 (70.2 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 41/107 (38%), Positives = 69/107 (64%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPG 323
++ L++ PTRELA QV ++ +A+GI NV+V+ + GG+ Q L+ ++VGTPG
Sbjct: 70 IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 129
Query: 324 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
R+ + + +++ ++L L+ VLDEADRM+E G +L +II+ P
Sbjct: 130 RIVDHL---DRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173
Score = 127 (49.8 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A++ L+L L++++ + + E TPIQ +PA G+DVIG +TGSGKT AFGL ++
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAIL-AGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 236 QRL 238
+L
Sbjct: 61 NKL 63
Score = 78 (32.5 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 459 NKLEESFIECKEEDKDAY--LYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTL 516
N +E+ F + ++DK L +L H +VFC + + ++ L+ LG V L
Sbjct: 212 NTIEQHFYQL-DDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVLAL 270
Query: 517 HAQMQQRAR 525
H ++QR R
Sbjct: 271 HGDLEQRDR 279
Score = 46 (21.3 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 395 KKRQTLVFSATIALSAD-FRKKLKHGSLKSKQSV-NGLNSIE 434
++RQTL+FSAT K++ + + K +V + N+IE
Sbjct: 174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIE 215
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 185 (70.2 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 41/107 (38%), Positives = 69/107 (64%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPG 323
++ L++ PTRELA QV ++ +A+GI NV+V+ + GG+ Q L+ ++VGTPG
Sbjct: 70 IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 129
Query: 324 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
R+ + + +++ ++L L+ VLDEADRM+E G +L +II+ P
Sbjct: 130 RIVDHL---DRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173
Score = 127 (49.8 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A++ L+L L++++ + + E TPIQ +PA G+DVIG +TGSGKT AFGL ++
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAIL-AGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 236 QRL 238
+L
Sbjct: 61 NKL 63
Score = 78 (32.5 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 459 NKLEESFIECKEEDKDAY--LYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTL 516
N +E+ F + ++DK L +L H +VFC + + ++ L+ LG V L
Sbjct: 212 NTIEQHFYQL-DDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVLAL 270
Query: 517 HAQMQQRAR 525
H ++QR R
Sbjct: 271 HGDLEQRDR 279
Score = 46 (21.3 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 395 KKRQTLVFSATIALSAD-FRKKLKHGSLKSKQSV-NGLNSIE 434
++RQTL+FSAT K++ + + K +V + N+IE
Sbjct: 174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIE 215
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 173 (66.0 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 41/113 (36%), Positives = 65/113 (57%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + L++TPTRELA Q+ + + + K + ++ +VGG+ Q L +P VV+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIA 126
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 370
TPGRL + + + L L F VLDEADR++E G F +L+ I++ +P
Sbjct: 127 TPGRLADHLRSS--NTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP 177
Score = 153 (58.9 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A+ EL L P L++ ++ PTP+Q +CIP QG+D +G A+TGSGKT AF LP++
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPIL-QGRDCLGCAKTGSGKTAAFVLPVL 61
Query: 236 QRLLEE 241
Q L E+
Sbjct: 62 QVLSED 67
Score = 70 (29.7 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 23/110 (20%), Positives = 49/110 (44%)
Query: 434 ETLSERAGMRANVAIV-DLTNMCVLANKLEESFIECKEEDKDAYLYYILSV----HGQGR 488
+TL+E + N + + ++L++ ++ E KDAYL +++ H
Sbjct: 191 DTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHEDWS 250
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538
I+F + + ++ +L+ LH+ M+QR R ++ + I K
Sbjct: 251 IIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFK 300
Score = 49 (22.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETL 436
+G ++ T + + +RQTL+FSAT+ + + K L ++ + + +++ L
Sbjct: 160 QGCADFTADLEVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDEL 219
Query: 437 SER 439
+R
Sbjct: 220 DQR 222
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 173 (66.0 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 46/127 (36%), Positives = 70/127 (55%)
Query: 257 EKYA--PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKAR 314
+K+A P G + A+I+TPTRELALQ+ + +K ++ +++ V I GG Q L R
Sbjct: 155 QKWAEDPFG-IFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGR 213
Query: 315 PEVVVGTPGRLWE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
P VVV TPGRL + + + G + L + VLDEADR++ G L + L
Sbjct: 214 PHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLP 273
Query: 374 GSNKGQS 380
G ++ Q+
Sbjct: 274 GPSQRQT 280
Score = 165 (63.1 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 37/93 (39%), Positives = 59/93 (63%)
Query: 152 AVSNGPDDAEEELVNEA-EI--STEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPA 208
A S+ DD L+ +A EI + E +++ L + P L+ S+ + ++PT IQ+ACIP
Sbjct: 69 ATSSRKDDENPVLIKDALEIGLNAEENSFKALNVAPWLVGSLTTMAVRKPTAIQRACIPE 128
Query: 209 AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEE 241
+G+D IG + TGSGKT+AF +PI+Q+ E+
Sbjct: 129 IL-KGRDCIGGSRTGSGKTIAFSVPILQKWAED 160
Score = 61 (26.5 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQ--GRTIVFCTSIAALRHISSLLKILGIDVWTLHA 518
L ++++ ++A+L+ +LS IVF + + + LL+ LG V +LH+
Sbjct: 323 LRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHS 382
Query: 519 QMQQRAR 525
+ Q R
Sbjct: 383 LLPQSER 389
Score = 39 (18.8 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 396 KRQTLVFSATI 406
+RQTL+F+AT+
Sbjct: 277 QRQTLLFTATL 287
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 222 (83.2 bits), Expect = 7.0e-25, Sum P(2) = 7.0e-25
Identities = 86/278 (30%), Positives = 128/278 (46%)
Query: 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKA 313
E + + RALI++P RELALQ +K +KG ++R V IVGG+S E+Q LL
Sbjct: 129 EHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188
Query: 314 RPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
+P++VV TPGR L E L EL ++ + V DEADR+ E G +L I+ LP
Sbjct: 189 KPDIVVATPGRFLHLKV--EMKL-ELSSIEYVVFDEADRLFEMGFAAQLTEILHALPT-- 243
Query: 374 GSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSI 433
S QT + ++L R TLV A L +L S S + S+
Sbjct: 244 ------SRQT--LLFSATLPR----TLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSV 291
Query: 434 ETLSERAGMRANVAIVDLTNMCVLAN--KLEESFIECKEEDKDAYLYYILSVHGQGR--- 488
+T A + + D+ + + N E + ++ K A L L G
Sbjct: 292 KTAEREAALLC--ILQDIIKLPLKDNVRPREIGNVNNPKKRKRA-LELALKGSESGSPDS 348
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARL 526
T+VF + + ++S LL G V ++ + Q ARL
Sbjct: 349 TLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARL 386
Score = 141 (54.7 bits), Expect = 7.0e-25, Sum P(2) = 7.0e-25
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ + L+ L+++I++ FK PTPIQ+ IP +G+DV+G A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLL-EGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 237 RL 238
L
Sbjct: 130 HL 131
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 290 (107.1 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
Identities = 74/196 (37%), Positives = 118/196 (60%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
EL L+ L K++ + K PT +Q+ IPA G+D++ ++TGSGKT AFGLP++Q L
Sbjct: 21 ELGLNAALRKAL-PTRLKHPTRVQQLAIPAIL-AGRDLLALSQTGSGKTFAFGLPLLQIL 78
Query: 239 LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN----VR 294
++ A K A K P AL++ PTRELALQV++ L +A ++ +
Sbjct: 79 WQQ---IAVQTTAKSVPAAK--PL----ALVLVPTRELALQVSEALHALASQLSTSAPLN 129
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
+ + GG++ E+Q L A+P++VV TPGRL +L + + H + L + VLDEADR++
Sbjct: 130 IQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCT--QSH-ISLDAIKHLVLDEADRLL 186
Query: 355 ENGHFRELQSIIDMLP 370
E G + ++Q ++ M+P
Sbjct: 187 EMGFWPDMQKLMAMMP 202
Score = 47 (21.6 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 434 ETLSERAG-MRANVAI-VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491
E L AG + N + V+ + + ++EE + K L +L + + +V
Sbjct: 216 EALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLV 275
Query: 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
F ++ I+ L GI+ LH + Q R
Sbjct: 276 FISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 290 (107.1 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
Identities = 74/196 (37%), Positives = 118/196 (60%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
EL L+ L K++ + K PT +Q+ IPA G+D++ ++TGSGKT AFGLP++Q L
Sbjct: 21 ELGLNAALRKAL-PTRLKHPTRVQQLAIPAIL-AGRDLLALSQTGSGKTFAFGLPLLQIL 78
Query: 239 LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN----VR 294
++ A K A K P AL++ PTRELALQV++ L +A ++ +
Sbjct: 79 WQQ---IAVQTTAKSVPAAK--PL----ALVLVPTRELALQVSEALHALASQLSTSAPLN 129
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
+ + GG++ E+Q L A+P++VV TPGRL +L + + H + L + VLDEADR++
Sbjct: 130 IQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCT--QSH-ISLDAIKHLVLDEADRLL 186
Query: 355 ENGHFRELQSIIDMLP 370
E G + ++Q ++ M+P
Sbjct: 187 EMGFWPDMQKLMAMMP 202
Score = 47 (21.6 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 434 ETLSERAG-MRANVAI-VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491
E L AG + N + V+ + + ++EE + K L +L + + +V
Sbjct: 216 EALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLV 275
Query: 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
F ++ I+ L GI+ LH + Q R
Sbjct: 276 FISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 173 (66.0 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 41/113 (36%), Positives = 65/113 (57%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + L++TPTRELA Q+ + + + K + ++ +VGG+ Q L +P VV+
Sbjct: 71 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIA 129
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 370
TPGRL + + + L L F VLDEADR++E G F +L+ I++ +P
Sbjct: 130 TPGRLADHLRSS--NTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP 180
Score = 154 (59.3 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 171 STEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAF 230
S+ A+ EL L P L++ ++ PTP+Q +CIP QG+D +G A+TGSGKT AF
Sbjct: 1 SSGMAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPIL-QGRDCLGCAKTGSGKTAAF 59
Query: 231 GLPIMQRLLEE 241
LP++Q L E+
Sbjct: 60 VLPVLQVLSED 70
Score = 70 (29.7 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 23/110 (20%), Positives = 49/110 (44%)
Query: 434 ETLSERAGMRANVAIV-DLTNMCVLANKLEESFIECKEEDKDAYLYYILSV----HGQGR 488
+TL+E + N + + ++L++ ++ E KDAYL +++ H
Sbjct: 194 DTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEHEDWS 253
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538
I+F + + ++ +L+ LH+ M+QR R ++ + I K
Sbjct: 254 IIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFK 303
Score = 49 (22.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETL 436
+G ++ T + + +RQTL+FSAT+ + + K L ++ + + +++ L
Sbjct: 163 QGCADFTADLEVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDEL 222
Query: 437 SER 439
+R
Sbjct: 223 DQR 225
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 193 (73.0 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 45/114 (39%), Positives = 64/114 (56%)
Query: 259 YAPKG--HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPE 316
Y PK R LI+ PTRELA+Q +A ++ V +GG+S + QE+ L+ RP+
Sbjct: 323 YRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPD 382
Query: 317 VVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+V+ TPGR + M + VE + V+DEADRM+E+G EL II P
Sbjct: 383 IVIATPGRFIDHMRNSQGFTVE--NIEIMVMDEADRMLEDGFADELNEIIQACP 434
Score = 145 (56.1 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 150 SVAVSNGPDDAEEELVNE----AE-------ISTEFDAWNELRLHPLLMKSIYRLQFKEP 198
S A S+ ++ EEE+ + AE ++T ++ + L ++K + L F+ P
Sbjct: 223 SAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVP 282
Query: 199 TPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
T IQ IP A GKD++GAA TGSGKT AF +PI++RLL +K
Sbjct: 283 TQIQDKTIPLAL-LGKDIVGAAVTGSGKTAAFIVPILERLLYRPKK 327
Score = 59 (25.8 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 18/82 (21%), Positives = 35/82 (42%)
Query: 449 VDLTNMCVLANKLEESFIECKEED---KDAYLYYILSVHGQGRTIVFCTSIAALRHISSL 505
V + N A L + F+ + + + A L Y+ RTI+F S A + +
Sbjct: 464 VFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVI 523
Query: 506 LKILGIDVWTLHAQMQQRARLK 527
+L ++ +H + Q R++
Sbjct: 524 FGLLSLNATEIHGSLSQEQRVR 545
Score = 45 (20.9 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 395 KKRQTLVFSATIALSAD 411
K RQT++FSAT+ D
Sbjct: 435 KSRQTMLFSATMTDKVD 451
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 304 (112.1 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
WNE ++ L+ I +L ++EPT +Q+A IP A + +DV+G AETGSGKTLAF +P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKK-RDVVGVAETGSGKTLAFLIPVLN 228
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+L E K + E P G LI+ PTRELALQ+T + K + +V+
Sbjct: 229 YILSIDENYLKYEKISNE------PVG----LILAPTRELALQITKEAEKFCKKLGYQVL 278
Query: 297 PIVGGMSTEKQ-ERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
PI+GG + ++ + ++V TPGRL + + E+ +V+L V+DEADRMI+
Sbjct: 279 PIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI---ERKIVDLSKCYCLVMDEADRMID 335
Query: 356 NGHFRELQSIIDMLP 370
G ++L ++D LP
Sbjct: 336 MGFEKDLNKVLDKLP 350
Score = 190 (71.9 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 47/141 (33%), Positives = 79/141 (56%)
Query: 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGRLW 326
LI+ PTRELALQ+T + K + +V+PI+GG + ++ + ++V TPGRL
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNC 386
+ + E+ +V+L V+DEADRMI+ G ++L ++D LP +Q +
Sbjct: 310 DSI---ERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPT--------EKQLSST 358
Query: 387 VTVSSLQRKKRQTLVFSATIA 407
+ +KR T++F+ATI+
Sbjct: 359 IDGRIFHLEKRSTMMFTATIS 379
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 304 (112.1 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
WNE ++ L+ I +L ++EPT +Q+A IP A + +DV+G AETGSGKTLAF +P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKK-RDVVGVAETGSGKTLAFLIPVLN 228
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+L E K + E P G LI+ PTRELALQ+T + K + +V+
Sbjct: 229 YILSIDENYLKYEKISNE------PVG----LILAPTRELALQITKEAEKFCKKLGYQVL 278
Query: 297 PIVGGMSTEKQ-ERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
PI+GG + ++ + ++V TPGRL + + E+ +V+L V+DEADRMI+
Sbjct: 279 PIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI---ERKIVDLSKCYCLVMDEADRMID 335
Query: 356 NGHFRELQSIIDMLP 370
G ++L ++D LP
Sbjct: 336 MGFEKDLNKVLDKLP 350
Score = 190 (71.9 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 47/141 (33%), Positives = 79/141 (56%)
Query: 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGRLW 326
LI+ PTRELALQ+T + K + +V+PI+GG + ++ + ++V TPGRL
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNC 386
+ + E+ +V+L V+DEADRMI+ G ++L ++D LP +Q +
Sbjct: 310 DSI---ERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPT--------EKQLSST 358
Query: 387 VTVSSLQRKKRQTLVFSATIA 407
+ +KR T++F+ATI+
Sbjct: 359 IDGRIFHLEKRSTMMFTATIS 379
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 195 (73.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
+R LI+ PTRELALQ ++ +A+ N+ IVGG+S + QE L+ P+VV+ TPGR
Sbjct: 262 IRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGR 321
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
L + + H + L L +LDEADR+++ G E+ I++ P + +
Sbjct: 322 LIDHLLNA--HGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLND 379
Query: 385 NCVTVS--SLQRKKRQTL--VFSATIALSADFRKKLKHGSLKSKQSV 427
T++ SLQ+ R + + T L +F K+K L + ++
Sbjct: 380 EVKTLAKLSLQQPIRVQVDALMQVTSTLEQEF-VKIKPQHLSDRPAI 425
Score = 166 (63.5 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229
+ E + EL L L+K++ +L F +PTPIQ IP A + GKD++ +A TGSGKT A
Sbjct: 185 VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALN-GKDILASASTGSGKTAA 243
Query: 230 FGLPIMQRLL--EEREKAAKML 249
F LP+++RLL + +A ++L
Sbjct: 244 FLLPVLERLLFRDSEYRAIRVL 265
Score = 77 (32.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 449 VDLTNMCVLANKLEESFIECKEE---DKDAYLYYILS-VHGQGRTIVFCTSIAALRHISS 504
V + + + + LE+ F++ K + D+ A L + + V QG TI+FC S + +
Sbjct: 395 VQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRI 454
Query: 505 LLKILGIDVWTLHAQMQQRARLKLFSQ 531
+ + + LH + Q R Q
Sbjct: 455 IFGLSDLKAAELHGNLSQEQRFDSLQQ 481
Score = 42 (19.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 154 SNGPDDAEEELVNEAEISTEFDAWNE 179
+N DD +EE VNE E E + NE
Sbjct: 124 NNDNDDDDEE-VNEEEEEEEEEEDNE 148
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 301 (111.0 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 70/191 (36%), Positives = 116/191 (60%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W + + ++ ++ + +++PTPIQ IPA + G+D+IG A+TGSGKT+AF LP+ +
Sbjct: 373 WVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMN-GRDLIGIAKTGSGKTIAFLLPMFR 431
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
++++R LE+ GE G + A+I+TPTRELALQ+T K +K + +RVV
Sbjct: 432 HIMDQRA-----LEE-GE--------GPI-AVIMTPTRELALQITKECKKFSKTLGLRVV 476
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 477 CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDM 536
Query: 357 GHFRELQSIID 367
G ++ I+D
Sbjct: 537 GFEPQVMRIVD 547
Score = 48 (22.0 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 28 GEAEK-LDSLKWNHSFSAEDNDPFAFLVGSNELDGGFLSLEEID 70
GE +K ++ +K +S ED+D E +G + EE+D
Sbjct: 182 GELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKEGNEVEDEELD 225
Score = 40 (19.1 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKL 416
R RQT++FSAT A+ A R+ L
Sbjct: 550 RPDRQTVMFSATFPRAMEALARRIL 574
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 168 (64.2 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P VV+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 370
TPGRL + + ++ + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSSNTFSIK--KIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Score = 156 (60.0 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
EL L L++ +L K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 239 LEE 241
E+
Sbjct: 65 SED 67
Score = 71 (30.1 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 22/97 (22%), Positives = 42/97 (43%)
Query: 434 ETLSERAGMRANVAIVDLTNMCV-LANKLEESFIECKEEDKDAYLYYILS----VHGQGR 488
+TL E G+ N V +L++ ++ E+ KDAYL +++ H
Sbjct: 191 DTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWS 250
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
I+F + + + +L+ LH+ M+Q+ R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKER 287
Score = 44 (20.5 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
+G ++ T + + + +RQTL+FSAT+
Sbjct: 160 QGCTDFTVDLEAILAAVPTRRQTLLFSATL 189
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 188 (71.2 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
Identities = 45/114 (39%), Positives = 64/114 (56%)
Query: 259 YAPKG--HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPE 316
Y PK R +I+ PTRELA+Q +A +++ VGG+S + QE L+ RP+
Sbjct: 319 YRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPD 378
Query: 317 VVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
V++ TPGR + M V+ T+ VLDEADRM+E+G EL I+ LP
Sbjct: 379 VIIATPGRFIDHMRNSASFAVD--TVEILVLDEADRMLEDGFADELNEILTTLP 430
Score = 141 (54.7 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
++ + L +++ + + F +PTPIQ IP A GKDV+G A TGSGKT AF +PI+
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIAL-MGKDVVGGAVTGSGKTAAFVVPIL 314
Query: 236 QRLLEEREK 244
+RLL +K
Sbjct: 315 ERLLYRPKK 323
Score = 73 (30.8 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
Identities = 30/114 (26%), Positives = 48/114 (42%)
Query: 422 KSKQ----SVNGLNSIETLSERAGMRANVAI-VDLTNMCVLANKLEESFIECK---EEDK 473
KS+Q S +S++ L R G+ V + VD V+ L + F+ + EE +
Sbjct: 431 KSRQTMLFSATMTSSVDNLI-RVGLNKPVRLMVDSQKKTVVT--LTQEFVRLRPGREEKR 487
Query: 474 DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
YL Y+ R I+F H + +LG+ LH M Q R++
Sbjct: 488 MGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQ 541
Score = 51 (23.0 bits), Expect = 4.4e-22, Sum P(3) = 4.4e-22
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 395 KKRQTLVFSATIALSAD 411
K RQT++FSAT+ S D
Sbjct: 431 KSRQTMLFSATMTSSVD 447
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 302 (111.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 85/231 (36%), Positives = 123/231 (53%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W E L ++K + ++ +KEP+ IQ+A IP Q KD+IG AETGSGKT AF +P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL-QRKDLIGIAETGSGKTAAFIIPLII 309
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
A L E P A+++ PTRELA Q+ A+ + R V
Sbjct: 310 --------AISKLPPLTESNMHLGPY----AVVLAPTRELAQQIQVEGNKFAEPLGFRCV 357
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+VGG + E+Q + +VV TPGRL + + E+ L L ++ V+DEADRM++
Sbjct: 358 SVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL---ERRLFVLSQCTYVVMDEADRMLDM 414
Query: 357 GHFRELQSIIDMLPMTNGSNK-GQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
G ++ I+ LP +N S K G T N SS R RQT++FSAT+
Sbjct: 415 GFEDDVNKILSSLPSSNASEKDGSILATAN----SSSSR--RQTIMFSATL 459
Score = 41 (19.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQM 532
I+F + I+ L +G TLH Q R + Q+
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQL 562
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 168 (64.2 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P VV+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 370
TPGRL + + ++ + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSSNTFSIK--KIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Score = 156 (60.0 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
EL L L++ +L K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 239 LEE 241
E+
Sbjct: 65 SED 67
Score = 70 (29.7 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 22/97 (22%), Positives = 42/97 (43%)
Query: 434 ETLSERAGMRANVAIVDLTNMCV-LANKLEESFIECKEEDKDAYLYYILS----VHGQGR 488
+TL E G+ N V +L++ ++ E+ KDAYL +++ H
Sbjct: 191 DTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWS 250
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
I+F + + + +L+ LH+ M+Q+ R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKER 287
Score = 44 (20.5 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 407 ALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFI 466
A+ +KKL+ S++ + + L + + ++ A D NK ++ +
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEI---NKRKQLIL 418
Query: 467 ECKEEDKDA 475
E K+ D +A
Sbjct: 419 EGKDPDLEA 427
Score = 44 (20.5 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
+G ++ T + + + +RQTL+FSAT+
Sbjct: 160 QGCTDFTVDLEAILAAVPARRQTLLFSATL 189
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 174 (66.3 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 169 EISTEFD---AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
E ++E+D ++ ++ L L+K+I + FK+PTPIQKACIP GKD+ A TG+G
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 233
Query: 226 KTLAFGLPIMQRLLEEREKAA 246
KT AF LP+++RL+ + +AA
Sbjct: 234 KTAAFALPVLERLIYKPRQAA 254
Score = 166 (63.5 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV K +A+ ++ VGG+ + QE L+A P++++ TPGRL
Sbjct: 257 RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 316
Query: 326 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 368
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 317 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 357
Score = 59 (25.8 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 461 LEESFIECK---EEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
L + FI + E D++A + +L ++F + + LL +LG+ V LH
Sbjct: 401 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELH 460
Query: 518 AQMQQRARLK 527
+ Q RL+
Sbjct: 461 GNLSQTQRLE 470
Score = 42 (19.8 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKS 423
RQT++FSAT+ D K L SLK+
Sbjct: 362 RQTMLFSATMT---DEVKDLASVSLKN 385
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 177 (67.4 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 44/140 (31%), Positives = 71/140 (50%)
Query: 259 YAPKGH--LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPE 316
Y PKG R L++ PTRELA+QV + ++ I + V GG+ + QE L++ P+
Sbjct: 212 YRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPD 271
Query: 317 VVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSN 376
VVV TPGRL + + L + VLDEADRM+E ++ +I + +
Sbjct: 272 VVVATPGRLIDHLHNSPSF--NLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTL 329
Query: 377 KGQSEQTQNCVTVSSLQRKK 396
+ T+ ++S+ +K
Sbjct: 330 LFSATMTEEIDELASMSLQK 349
Score = 149 (57.5 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 158 DDAEEELVNEAEISTEFD-AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
+D L++ + T + ++ ++ L ++K+ + +PTPIQ+ACIP A GKD+
Sbjct: 130 EDFFSALIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVAL-TGKDI 188
Query: 217 IGAAETGSGKTLAFGLPIMQRLLEEREKAA 246
A TG+GKT AF LPI++R++ R K A
Sbjct: 189 CACAATGTGKTAAFVLPILERMIY-RPKGA 217
Score = 75 (31.5 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 434 ETLSERAGMRANVAI-VDLTNMCVLANKLEESFIECK---EEDKDAYLYYILSVHGQGRT 489
E + E A M + + + A KL + FI + E D++A + +++ Q T
Sbjct: 337 EEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNT 396
Query: 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
IVF + + + LL +LGI V + + + Q R++ S+
Sbjct: 397 IVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSK 438
Score = 43 (20.2 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 395 KKRQTLVFSATIALSAD 411
+ RQTL+FSAT+ D
Sbjct: 324 QNRQTLLFSATMTEEID 340
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 177 (67.4 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327
L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P VVV TPGRL +
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLAD 133
Query: 328 LMSGGEKHLVELHTLSFFVLDEADRMIENG--HF-RELQSIIDMLP 370
+ + + L+ + F ++DEADR++E G F ++L+ I+ +P
Sbjct: 134 HIRSSDT--INLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVP 177
Score = 133 (51.9 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ L L L++ ++ PT +Q+ CIPA G+D +G A+TGSGKT AF LP++Q
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAIL-DGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 237 RLLEE 241
+L E+
Sbjct: 63 KLSED 67
Score = 81 (33.6 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 460 KLEESFIECKEEDKDAYLYYILSV----HGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
+L++ FI E+ KDAYL +++ H I+F + + + ++ +L+ +
Sbjct: 218 ELDQRFILTPEKVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTIS 277
Query: 516 LHAQMQQRAR 525
LH+ M+QR R
Sbjct: 278 LHSMMKQRQR 287
Score = 53 (23.7 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
+G ++ T++ + S KRQTL+FSAT+
Sbjct: 160 QGCTDFTKDLEVILSAVPAKRQTLLFSATL 189
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 288 (106.4 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 94/303 (31%), Positives = 152/303 (50%)
Query: 166 NEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
N A I T FD L L+ LL+ +I ++ + + TPIQK + ++ D+IG A+TGSG
Sbjct: 355 NVAAIET-FDD-PSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRN-DLIGVAQTGSG 411
Query: 226 KTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLR-ALIITPTRELALQVTDHL 284
KT + LPI+ +L E + + Y + L LI+ PTRELA+Q+
Sbjct: 412 KTAGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDA 471
Query: 285 KGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344
K ++ V + GG + + Q L +++V TPGRL +++ EK ++L +F
Sbjct: 472 KKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDIL---EKGKIKLFLTTF 528
Query: 345 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRK--KRQTLVF 402
VLDEADRM++ G +++SI++ M N + ++N V KRQT++F
Sbjct: 529 LVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHT--SENKVEYKKYCNDIIKRQTIMF 586
Query: 403 SATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC-VLANKL 461
SAT FRK+++ + + L + S ++ N+ V+ N C L N L
Sbjct: 587 SAT------FRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCNYLLNLL 640
Query: 462 EES 464
E+
Sbjct: 641 AEN 643
Score = 62 (26.9 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
++++ + +EE+K YL +L+ + G TI+F + I L ++ +H
Sbjct: 620 IKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDK 679
Query: 521 QQRAR---LKLFSQMI 533
Q R LKLF + I
Sbjct: 680 SQDERERALKLFKRGI 695
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 288 (106.4 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 94/303 (31%), Positives = 152/303 (50%)
Query: 166 NEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
N A I T FD L L+ LL+ +I ++ + + TPIQK + ++ D+IG A+TGSG
Sbjct: 355 NVAAIET-FDD-PSLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRN-DLIGVAQTGSG 411
Query: 226 KTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLR-ALIITPTRELALQVTDHL 284
KT + LPI+ +L E + + Y + L LI+ PTRELA+Q+
Sbjct: 412 KTAGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDA 471
Query: 285 KGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344
K ++ V + GG + + Q L +++V TPGRL +++ EK ++L +F
Sbjct: 472 KKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDIL---EKGKIKLFLTTF 528
Query: 345 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRK--KRQTLVF 402
VLDEADRM++ G +++SI++ M N + ++N V KRQT++F
Sbjct: 529 LVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHT--SENKVEYKKYCNDIIKRQTIMF 586
Query: 403 SATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC-VLANKL 461
SAT FRK+++ + + L + S ++ N+ V+ N C L N L
Sbjct: 587 SAT------FRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCNYLLNLL 640
Query: 462 EES 464
E+
Sbjct: 641 AEN 643
Score = 62 (26.9 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
++++ + +EE+K YL +L+ + G TI+F + I L ++ +H
Sbjct: 620 IKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDK 679
Query: 521 QQRAR---LKLFSQMI 533
Q R LKLF + I
Sbjct: 680 SQDERERALKLFKRGI 695
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 183 (69.5 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 47/127 (37%), Positives = 68/127 (53%)
Query: 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMS 303
K A L E + ++ + RALI++PTRELALQ K + K ++ I+GG
Sbjct: 63 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 122
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
E Q L P++++ TPGRL + E L +L ++ + V DEADR+ E G +LQ
Sbjct: 123 MEDQFAALHENPDIIIATPGRLVHVAV--EMSL-KLQSVEYVVFDEADRLFEMGFAEQLQ 179
Query: 364 SIIDMLP 370
II LP
Sbjct: 180 EIIARLP 186
Score = 123 (48.4 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
+ K I + +K PTPIQ+ IP GKDV+ A TGSGKT F LP+ +RL
Sbjct: 24 VFKGIMKKGYKVPTPIQRKTIPVIL-DGKDVVAMARTGSGKTACFLLPMFERL 75
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 165 (63.1 bits), Expect = 4.9e-24, Sum P(3) = 4.9e-24
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 159 DAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIG 218
D E +A E ++++ L L+K+I + FK+PTPIQKAC+P GKD+
Sbjct: 185 DTTEGFFEDASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGL-LGKDICA 243
Query: 219 AAETGSGKTLAFGLPIMQRLL-EERE 243
A TG+GKT AF LP+++RL+ + RE
Sbjct: 244 CAATGTGKTAAFMLPVLERLIYKPRE 269
Score = 165 (63.1 bits), Expect = 4.9e-24, Sum P(3) = 4.9e-24
Identities = 41/131 (31%), Positives = 69/131 (52%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV + +A+ + VGG+ + QE L+A P+V++ TPGRL
Sbjct: 274 RVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGPDVLIATPGRL 333
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS---NKGQSEQ 382
+ + EL + +LDEADRM++ +++ II M + + SE+
Sbjct: 334 IDHLHNTPSF--ELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTMLFSATMSEE 391
Query: 383 TQNCVTVSSLQ 393
++ +VS Q
Sbjct: 392 VKDLASVSLKQ 402
Score = 71 (30.1 bits), Expect = 4.9e-24, Sum P(3) = 4.9e-24
Identities = 25/101 (24%), Positives = 47/101 (46%)
Query: 435 TLSERAGMRANVAIVDLTNMCVLANK-----LEESFIEC---KEEDKDAYLYYILSVHGQ 486
T+SE A+V++ + V +N L + F+ KE D++A + +L+ Q
Sbjct: 387 TMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLTRTFQ 446
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
++F + + LL ++G+ V LH + Q RL+
Sbjct: 447 DHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLE 487
Score = 42 (19.8 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 381 EQTQNCVTVSSLQRKKRQTLVFSATIA 407
EQ + + + + QR QT++FSAT++
Sbjct: 366 EQMKEIIRMCAYQR---QTMLFSATMS 389
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 301 (111.0 bits), Expect = 5.2e-24, P = 5.2e-24
Identities = 101/385 (26%), Positives = 174/385 (45%)
Query: 152 AVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAH 211
++S ++E N I W++L + +K +Y +F PT IQ+ IP A
Sbjct: 64 SISRNNKNSENPKKNNNNIIDMNCLWSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLAL- 122
Query: 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271
+GK ++ +ETGSGKTLAF LPI++RLL+ + KG Y +ALI+
Sbjct: 123 EGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGS----Y---NITKALILL 175
Query: 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331
PTREL+LQ D ++ + K + + GG+ ++QE K R ++ V TPGR+ +L+
Sbjct: 176 PTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLN 235
Query: 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSS 391
+ L V DEAD+++E G E I+D+ + T + +++
Sbjct: 236 SSSDFINY--LEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATLTSDIKQLAN 293
Query: 392 LQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDL 451
K VF I F K ++ K + N N+ T ++ V +
Sbjct: 294 FSLKNP---VF---IQSGMSFDK-----NVDGKNTYNAYNTCNTYNDNDNNNIVVNNIIS 342
Query: 452 TNMCVLANK--------LEESFIEC-KEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHI 502
+ ++NK L++ F+ +E+ + A L Y+ + + I+F + +
Sbjct: 343 NSFLKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFFKTKRETHLM 402
Query: 503 SSLLKILGIDVWTLHAQMQQRARLK 527
L +L + LH M Q+ R++
Sbjct: 403 YLLFDLLNLRCAELHGSMSQKKRIE 427
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 301 (111.0 bits), Expect = 5.2e-24, P = 5.2e-24
Identities = 101/385 (26%), Positives = 174/385 (45%)
Query: 152 AVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAH 211
++S ++E N I W++L + +K +Y +F PT IQ+ IP A
Sbjct: 64 SISRNNKNSENPKKNNNNIIDMNCLWSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLAL- 122
Query: 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271
+GK ++ +ETGSGKTLAF LPI++RLL+ + KG Y +ALI+
Sbjct: 123 EGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGS----Y---NITKALILL 175
Query: 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331
PTREL+LQ D ++ + K + + GG+ ++QE K R ++ V TPGR+ +L+
Sbjct: 176 PTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLN 235
Query: 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSS 391
+ L V DEAD+++E G E I+D+ + T + +++
Sbjct: 236 SSSDFINY--LEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATLTSDIKQLAN 293
Query: 392 LQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDL 451
K VF I F K ++ K + N N+ T ++ V +
Sbjct: 294 FSLKNP---VF---IQSGMSFDK-----NVDGKNTYNAYNTCNTYNDNDNNNIVVNNIIS 342
Query: 452 TNMCVLANK--------LEESFIEC-KEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHI 502
+ ++NK L++ F+ +E+ + A L Y+ + + I+F + +
Sbjct: 343 NSFLKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFFKTKRETHLM 402
Query: 503 SSLLKILGIDVWTLHAQMQQRARLK 527
L +L + LH M Q+ R++
Sbjct: 403 YLLFDLLNLRCAELHGSMSQKKRIE 427
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 168 (64.2 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P VV+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 370
TPGRL + + ++ + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSSNTFSIK--KIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Score = 156 (60.0 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
EL L L++ +L K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 239 LEE 241
E+
Sbjct: 65 SED 67
Score = 66 (28.3 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 460 KLEESFIECKEEDKDAYLYYILS----VHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
+L++ ++ E+ KDAYL +++ H I+F + + + +L+
Sbjct: 218 QLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVA 277
Query: 516 LHAQMQQRAR 525
LH+ M+Q+ R
Sbjct: 278 LHSMMKQKER 287
Score = 45 (20.9 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 407 ALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFI 466
A+ +KKL+ S++ + + L + + ++ A D NK ++ +
Sbjct: 362 AIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAANFDEKKEI---NKRKQMIL 418
Query: 467 ECKEEDKDA 475
E K+ D +A
Sbjct: 419 EGKDPDLEA 427
Score = 44 (20.5 bits), Expect = 4.6e-11, Sum P(3) = 4.6e-11
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
+G ++ T + + + +RQTL+FSAT+
Sbjct: 160 QGCTDFTVDLEAILAAVPARRQTLLFSATL 189
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 297 (109.6 bits), Expect = 7.3e-24, P = 7.3e-24
Identities = 107/373 (28%), Positives = 181/373 (48%)
Query: 168 AEI-STEFDA--WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGS 224
AEI S F A + EL L L+ S+ R F PT +Q A +PA +G D + + TGS
Sbjct: 100 AEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAII-KGHDAVIQSYTGS 158
Query: 225 GKTLAFGLPIMQRL--LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTD 282
GKTLA+ LPI+ + L E+ +++ DK E ++A+I+ P+REL +Q+
Sbjct: 159 GKTLAYLLPILSEIGPLAEKSRSSHSENDKRTE---------IQAMIVAPSRELGMQIVR 209
Query: 283 HLKGVAKGINVRVVP-IVGGMSTEKQERLLKA-RPEVVVGTPGRLWELMSGGEKHLVELH 340
++ + ++ R+V +VGG + +QE LK +P +VVGTPGR+ E+ GG+ H H
Sbjct: 210 EVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHT---H 266
Query: 341 TLSFFVLDEADRMIENGHFRE-LQSIIDMLPMTNGSN-KGQSEQTQNCVTVSSLQRKKRQ 398
F VLDE D ++ + +FRE + I++ + +G+ KG+ ++ N RQ
Sbjct: 267 GCRFLVLDEVDELL-SFNFREDIHRILEHVGKRSGAGPKGEVDERAN-----------RQ 314
Query: 399 TLVFSATIALSA-DFRKKLKHGS-LKSKQSVNGLNSIETLSERAGMRANVAIVD---LTN 453
T++ SAT+ S K H L V L++++ + + + D T
Sbjct: 315 TILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTT 374
Query: 454 MCVLANKLEESFIECKEEDK-DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID 512
+ L L+ + K + K D + ++ Q I F L+ + L+ G++
Sbjct: 375 IQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQS-VIAFMNHSRQLKDVVYKLEARGMN 433
Query: 513 VWTLHAQMQQRAR 525
+H + + R
Sbjct: 434 SAEMHGDLGKLGR 446
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 264 (98.0 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 73/215 (33%), Positives = 111/215 (51%)
Query: 177 WNEL--RLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
W L +LH +++++ L F TP+Q ACIP KDV A TGSGKTLAF +P
Sbjct: 9 WGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFM-SNKDVAAEAVTGSGKTLAFVIPA 67
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NV 293
++ LL+ EK KM + ALIITPTRELA+Q+++ + +G
Sbjct: 68 LEILLKREEKLKKM---------------QVGALIITPTRELAMQISEVMGRFLQGFPQF 112
Query: 294 RVVPIVGGMST-EKQERLLKARPEVVVGTPGRLWELM---SGGEKHLVELHTLSFFVLDE 349
+ ++GG + E E+L +++ TPGRL ++ + G + +L VLDE
Sbjct: 113 TQILLIGGSNPIEDVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDE 172
Query: 350 ADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
ADR+++ G L +I+ LP + + QTQ
Sbjct: 173 ADRLLDMGFEASLNTILGYLPKQRRTGLFSATQTQ 207
Score = 78 (32.5 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 31/120 (25%), Positives = 54/120 (45%)
Query: 424 KQSVNGLNSIETLSE-----RAGMRANVAI------VDLTNMCVLANKLEESFIECKEED 472
KQ GL S E RAG+R V I V +++ KL + C+ E+
Sbjct: 194 KQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEE 253
Query: 473 KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFS 530
K L L H + +VF ++ A + + L++L + + +H +M+ + R K+F+
Sbjct: 254 KFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHCIHGKMKHK-RNKIFA 312
Score = 41 (19.5 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 379 QSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 417
++E+ N + Q K + LVF +T A F K L+
Sbjct: 250 RAEEKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKALE 288
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 169 (64.5 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P VV+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIA 126
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 370
TPGRL + + + + + F V+DEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSS--NTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVP 177
Score = 154 (59.3 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
E+ L L++ +L K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 EIGLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 239 LEE 241
E+
Sbjct: 65 SED 67
Score = 65 (27.9 bits), Expect = 9.9e-24, Sum P(3) = 9.9e-24
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 434 ETLSERAGMRANVAIVDLTNMCV-LANKLEESFIECKEEDKDAYLYYILSVHGQG----R 488
+TL E G+ N V +L++ ++ E+ KDAYL +++
Sbjct: 191 DTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCS 250
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
I+F + + + +L+ LH+ M+Q+ R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKER 287
Score = 50 (22.7 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
+G ++ T + T+ + +RQTL+FSAT+
Sbjct: 160 QGCTDFTTDLETILAAVPARRQTLLFSATL 189
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 171 (65.3 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 39/104 (37%), Positives = 61/104 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV K +A+ N+ VGG+ + QE L+A P++++ TPGRL
Sbjct: 260 RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 319
Query: 326 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 368
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 320 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 360
Score = 165 (63.1 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 169 EISTEFD---AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
E ++++D ++ ++ L L+K+I + FK+PTPIQKACIP GKD+ A TG+G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 236
Query: 226 KTLAFGLPIMQRLL 239
KT AF LP+++RL+
Sbjct: 237 KTAAFALPVLERLI 250
Score = 58 (25.5 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 16/70 (22%), Positives = 33/70 (47%)
Query: 461 LEESFIECK---EEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
L + F+ + E D++A + +L+ ++F + + LL ++G+ V LH
Sbjct: 404 LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 518 AQMQQRARLK 527
+ Q RL+
Sbjct: 464 GNLSQTQRLE 473
Score = 42 (19.8 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKS 423
RQT++FSAT+ D K L SLK+
Sbjct: 365 RQTMLFSATMT---DEVKDLASVSLKN 388
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 171 (65.3 bits), Expect = 1.2e-23, Sum P(4) = 1.2e-23
Identities = 39/104 (37%), Positives = 61/104 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV K +A+ N+ VGG+ + QE L+A P++++ TPGRL
Sbjct: 281 RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 340
Query: 326 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 368
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 341 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 381
Score = 165 (63.1 bits), Expect = 1.2e-23, Sum P(4) = 1.2e-23
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 169 EISTEFD---AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
E ++++D ++ ++ L L+K+I + FK+PTPIQKACIP GKD+ A TG+G
Sbjct: 199 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 257
Query: 226 KTLAFGLPIMQRLL 239
KT AF LP+++RL+
Sbjct: 258 KTAAFALPVLERLI 271
Score = 58 (25.5 bits), Expect = 1.2e-23, Sum P(4) = 1.2e-23
Identities = 16/70 (22%), Positives = 33/70 (47%)
Query: 461 LEESFIECK---EEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
L + F+ + E D++A + +L+ ++F + + LL ++G+ V LH
Sbjct: 425 LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 484
Query: 518 AQMQQRARLK 527
+ Q RL+
Sbjct: 485 GNLSQTQRLE 494
Score = 42 (19.8 bits), Expect = 1.2e-23, Sum P(4) = 1.2e-23
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKS 423
RQT++FSAT+ D K L SLK+
Sbjct: 386 RQTMLFSATMT---DEVKDLASVSLKN 409
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 168 (64.2 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV + +A+ N+ VGG+ + QE L+A P++++ TPGRL
Sbjct: 291 RVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 350
Query: 326 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 368
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 351 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 391
Score = 167 (63.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 169 EISTEFD---AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
E ++++D ++ ++ L L+K+I + FK+PTPIQKACIP GKD+ A TG+G
Sbjct: 209 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 267
Query: 226 KTLAFGLPIMQRLLEEREKA 245
KT AF LP+++RL+ + +A
Sbjct: 268 KTAAFALPVLERLIYKPRQA 287
Score = 59 (25.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 461 LEESFIECK---EEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
L + FI + E D++A + +L+ ++F + + LL ++G+ V LH
Sbjct: 435 LRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 494
Query: 518 AQMQQRARLK 527
+ Q RL+
Sbjct: 495 GNLSQTQRLE 504
Score = 42 (19.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKS 423
RQT++FSAT+ D K L SLK+
Sbjct: 396 RQTMLFSATMT---DEVKDLASVSLKN 419
Score = 40 (19.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 308 ERLLKARPEVVVGTPGRLW 326
+RLL+ E VV P R W
Sbjct: 634 KRLLEKGKEAVVQEPERSW 652
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 183 (69.5 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 43/105 (40%), Positives = 61/105 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
RALI++PTRELALQ K + K ++ I+GG E Q L P++++ TPGRL
Sbjct: 167 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 226
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ E +L +L ++ + V DEADR+ E G +LQ II LP
Sbjct: 227 VHVAV--EMNL-KLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268
Score = 127 (49.8 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
S VS+ D E + + + + + + L + K I + +K PTPIQ+ IP
Sbjct: 70 SECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
GKDV+ A TGSGKT F LP+ +RL
Sbjct: 130 L-DGKDVVAMARTGSGKTACFLLPMFERL 157
Score = 86 (35.3 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 439 RAGMRANVAI-VDLTNMCVLANKLEESFIECKEEDKDAYLYYILS--VHGQGRTIVFCTS 495
RAG+ V I +D+ + L +L+ SF+ +E+ K A L Y+L V Q +T+VF +
Sbjct: 289 RAGLTEPVLIRLDVDSK--LNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVAT 346
Query: 496 IAALRHISSLLKILGIDVWTLHAQMQQRAR 525
+++ LL G+ +++ + Q AR
Sbjct: 347 KHHAEYLTELLMGQGVSCAHIYSALDQTAR 376
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 193 (73.0 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 45/129 (34%), Positives = 74/129 (57%)
Query: 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMS 303
K A + E+ + ++ K RA+I++P+RELA+Q + K A+G +R V + GG S
Sbjct: 187 KTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDS 246
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
E+Q ++ P+V++ TPGR L E +L +L ++ + V DEADR+ E G +L
Sbjct: 247 LEEQFGMMMTNPDVIIATPGRFLHLKV--EMNL-DLKSVEYVVFDEADRLFEMGFQEQLN 303
Query: 364 SIIDMLPMT 372
++ LP T
Sbjct: 304 ELLASLPTT 312
Score = 133 (51.9 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
L +++ +I R F++PTPIQ+ IP Q +D++G A TGSGKT AF LP++++L
Sbjct: 144 LSKIVLNNIKRKGFRQPTPIQRKTIPLIL-QSRDIVGMARTGSGKTAAFILPMVEKL 199
Score = 57 (25.1 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 439 RAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYIL 481
+AG+ N +V L ++ LE F+ K D++A L YIL
Sbjct: 331 KAGL-VNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYIL 372
Score = 46 (21.3 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 397 RQTLVFSATIALS-ADFRK 414
RQTL+FSAT+ S DF K
Sbjct: 313 RQTLLFSATLPNSLVDFVK 331
Score = 43 (20.2 bits), Expect = 2.2e-23, Sum P(5) = 2.2e-23
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
TI+F + + +IS LL+ G + ++ + Q AR
Sbjct: 435 TILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHAR 471
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 272 (100.8 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 77/215 (35%), Positives = 122/215 (56%)
Query: 161 EEELVNEAEI--STEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIG 218
E++ V A I ST F+A++ L L+++I + F+ PT IQ IP A Q +D+I
Sbjct: 4 EKKSVEGAYIDDSTTFEAFH---LDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIA 60
Query: 219 AAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278
A TGSGKTLA+ +P+++ +LE ++ D GEE G L +I+ PTRELA
Sbjct: 61 KAATGSGKTLAYLIPVIETILEYKKTI-----DNGEE------NGTL-GIILVPTRELAQ 108
Query: 279 QVTDHLKGVAK--GINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHL 336
QV + L+ + ++R + I MS LL +PE++VGTPG+L +L+ + +
Sbjct: 109 QVYNVLEKLVLYCSKDIRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQT-KINS 167
Query: 337 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371
+ L+ L F V+DE D ++ G+ +L I + LP+
Sbjct: 168 ISLNELKFLVVDEVDLVLTFGYQDDLNKIGEYLPL 202
Score = 65 (27.9 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 459 NKLEESFIECKEEDKDAYLYYILSVHG-QGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
NKL + +++ E DK Y I ++ +G+T++F +I + +++ GI L+
Sbjct: 245 NKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILN 304
Query: 518 AQMQQRARLKLFSQ 531
+++ +R + Q
Sbjct: 305 SELPVNSRQHIVDQ 318
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 183 (69.5 bits), Expect = 2.5e-23, Sum P(4) = 2.5e-23
Identities = 41/105 (39%), Positives = 68/105 (64%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K ++ L+I+PTRELA Q+ D+L + + ++ + GG+ ++Q LK + +VVV T
Sbjct: 180 KRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK-KSQVVVAT 238
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366
PGRL +L+ G V+L +++ VLDEADRM+E G ++++II
Sbjct: 239 PGRLLDLLQEGS---VDLSQVNYLVLDEADRMLEKGFEEDIKNII 280
Score = 147 (56.8 bits), Expect = 2.5e-23, Sum P(4) = 2.5e-23
Identities = 41/104 (39%), Positives = 57/104 (54%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRL---------QFKEPTP 200
S A+++ P +E E EI+ E D+ +L L PLL L +F +PTP
Sbjct: 80 SEALTSLPQSDIDEYFKENEIAVE-DSL-DLALRPLLSFDYLSLDSSIQAEISKFPKPTP 137
Query: 201 IQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
IQ P GKDV+G AETGSGKT AFG+P + L+ +++K
Sbjct: 138 IQAVAWPYLL-SGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK 180
Score = 48 (22.0 bits), Expect = 2.5e-23, Sum P(4) = 2.5e-23
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSAT 405
KG E +N + + KRQTL+F+AT
Sbjct: 270 KGFEEDIKNIIRETDAS--KRQTLMFTAT 296
Score = 42 (19.8 bits), Expect = 2.5e-23, Sum P(4) = 2.5e-23
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 418 HGSLKSKQSVNGLNSIETLSERAGMRANVAI--VDLTNMCVLAN 459
HG L +Q LN ++ + +VA +D+ N+ + N
Sbjct: 390 HGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVIN 433
Score = 42 (19.8 bits), Expect = 2.5e-23, Sum P(4) = 2.5e-23
Identities = 16/80 (20%), Positives = 32/80 (40%)
Query: 458 ANKLEESFIECKE-EDKDAYLYYILSVHGQG-----RTIVFCTSIAALRHISSLLKILGI 511
ANK +E + K+ L +L + G + ++F + LK G
Sbjct: 325 ANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGY 384
Query: 512 DVWTLHAQMQQRARLKLFSQ 531
+V +H + Q+ R + ++
Sbjct: 385 NVAAIHGDLSQQQRTQALNE 404
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 169 (64.5 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 37/88 (42%), Positives = 58/88 (65%)
Query: 161 EEELVNEAEISTEFD---AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVI 217
++E + E ++E+D ++ ++ L L+K+I L FK+PTPIQKACIP GKD+
Sbjct: 163 QKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGL-LGKDIC 221
Query: 218 GAAETGSGKTLAFGLPIMQRLLEEREKA 245
A TG+GKT AF LP+++RL+ + +A
Sbjct: 222 ACAATGTGKTAAFILPVLERLIYKPRQA 249
Score = 159 (61.0 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 42/138 (30%), Positives = 73/138 (52%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV K +A+ +V VGG+ + QE L++ P++++ TPGRL
Sbjct: 253 RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRL 312
Query: 326 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
+ L + HL + L +LDEADRM++ +++ II + + + T+
Sbjct: 313 IDHLHNCPSFHLSSVEVL---ILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTE 369
Query: 385 NCVTVSSLQRKKRQTLVF 402
++S+ K T +F
Sbjct: 370 EVKDLASVSLKN-PTRIF 386
Score = 65 (27.9 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 24/101 (23%), Positives = 48/101 (47%)
Query: 435 TLSERAGMRANVAIVDLTNMCVLANK-----LEESFIECK---EEDKDAYLYYILSVHGQ 486
T++E A+V++ + T + V +N L + FI + E D++A + +L+
Sbjct: 366 TMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFP 425
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
++F + + LL ++G+ V LH + Q RL+
Sbjct: 426 DHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLE 466
Score = 42 (19.8 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 381 EQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKS 423
EQ + + + S + RQT++FSAT+ K L SLK+
Sbjct: 345 EQMKEIIRLCS---RHRQTMLFSATMTEEV---KDLASVSLKN 381
Score = 37 (18.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275
MQ+ + KA K LE+ +EA A KG R+ TRE
Sbjct: 585 MQQSEAQINKAKKQLEEGKQEA---ATKGVERSWF--QTRE 620
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 167 (63.8 bits), Expect = 2.9e-23, Sum P(4) = 2.9e-23
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 169 EISTEFD---AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
E ++++D ++ ++ L L+K+I + FK+PTPIQKACIP GKD+ A TG+G
Sbjct: 178 EDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL-LGKDICACAATGTG 236
Query: 226 KTLAFGLPIMQRLLEEREKA 245
KT AF LP+++RL+ + +A
Sbjct: 237 KTAAFALPVLERLIYKPRQA 256
Score = 166 (63.5 bits), Expect = 2.9e-23, Sum P(4) = 2.9e-23
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV K +A+ ++ VGG+ + QE L+A P++++ TPGRL
Sbjct: 260 RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 319
Query: 326 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 368
+ L + HL + L +LDEADRM++ +++ II M
Sbjct: 320 IDHLHNCPSFHLSSIEVL---ILDEADRMLDEYFEEQMKEIIRM 360
Score = 57 (25.1 bits), Expect = 2.9e-23, Sum P(4) = 2.9e-23
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 461 LEESFIECK---EEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
L + FI + E D++A + +L ++F + + LL ++G+ V LH
Sbjct: 404 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 463
Query: 518 AQMQQRARLK 527
+ Q RL+
Sbjct: 464 GNLSQTQRLE 473
Score = 42 (19.8 bits), Expect = 2.9e-23, Sum P(4) = 2.9e-23
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKS 423
RQT++FSAT+ D K L SLK+
Sbjct: 365 RQTMLFSATMT---DEVKDLASVSLKN 388
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 208 (78.3 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 62/197 (31%), Positives = 97/197 (49%)
Query: 268 LIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
L++ PTRELA+QV + AK + N V+PI GG S ++Q LK P+V+VGTPGR+
Sbjct: 77 LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVM 136
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNC 386
+ M G ++L TL VLDEAD M++ G +++ I++ P + +
Sbjct: 137 DHMRRGT---LKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATMPEQI 193
Query: 387 VTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANV 446
V++ K + +IA S ++ ++ Q N L ++ + E +
Sbjct: 194 KRVANKHLKNATNI----SIAASHTTVDSIEQRFVQVSQH-NKLEALVRVLEVENTEGII 248
Query: 447 AIVDLTNMCV-LANKLE 462
V N CV LA KLE
Sbjct: 249 IFVRTRNSCVELAEKLE 265
Score = 136 (52.9 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACI-PAAAHQGKDVIGAAETGSGKTL 228
+S++ + EL L L++++ L +++PTPIQ A I P A GKD++G A+TG+GKT
Sbjct: 1 MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMA--GKDILGQAQTGTGKTG 58
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYA 260
AF LP++ ++ + +L E A + A
Sbjct: 59 AFALPLLNKVTSQTTPQILVLAPTRELAVQVA 90
Score = 77 (32.2 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 24/103 (23%), Positives = 47/103 (45%)
Query: 435 TLSERAGMRANVAIVDLTNMCVLAN-----KLEESFIECKEEDKDAYLYYILSVHGQGRT 489
T+ E+ AN + + TN+ + A+ +E+ F++ + +K L +L V
Sbjct: 188 TMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGI 247
Query: 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQM 532
I+F + + ++ L+ G LH M Q+AR + Q+
Sbjct: 248 IIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQL 290
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 299 (110.3 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 70/191 (36%), Positives = 112/191 (58%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W + + ++ ++ + +++PTPIQ IPA G+D+IG A+TGSGKT+AF LP+ +
Sbjct: 359 WVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIM-SGRDLIGIAKTGSGKTIAFLLPMFR 417
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+L++R EAE G L A+I+TPTRELALQ+T K +K + +RVV
Sbjct: 418 HILDQRPVG---------EAE-----GPL-AVIMTPTRELALQITKECKKFSKSLALRVV 462
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG +Q LK E++V TPGR+ +++ + L +++ V+DEADRM +
Sbjct: 463 CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDM 522
Query: 357 GHFRELQSIID 367
G ++ I+D
Sbjct: 523 GFEPQVMRIVD 533
Score = 39 (18.8 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 394 RKKRQTLVFSAT 405
R RQT++FSAT
Sbjct: 536 RPDRQTVMFSAT 547
Score = 39 (18.8 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 28 GEAEK-LDSLKWNHSFSAEDND 48
GE +K L+ +K +S ED+D
Sbjct: 151 GEIKKELEEMKQGKKWSLEDDD 172
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 199 (75.1 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 65/239 (27%), Positives = 105/239 (43%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
AL++TPTRELA Q+ + K + +N+R IVGGM Q L +RP +V+ TPGR+
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIK 188
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNC 386
L+ F VLDEADR+++ G EL++I LP + + + T N
Sbjct: 189 VLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
Query: 387 VTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLS--ERAGMRA 444
+ L+ + + A L L + + L + LS E G+R+
Sbjct: 249 QAL--LEHSSNKAYFYEAYEGLKTV--DTLTQQFIFEDKDAKELYLVHILSQMEDKGIRS 304
Query: 445 NVAIVDLTNMC----VLANKLEESFIECKEEDKDAYLYYILSVHGQGRT-IVFCTSIAA 498
+ V C ++ ++LE I + + LS G+ I+ T +A+
Sbjct: 305 AMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVAS 363
Score = 141 (54.7 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 166 NEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSG 225
N + +T + L L +++ L ++PTP+Q C+P G+DV+G A+TGSG
Sbjct: 49 NPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKIL-AGRDVLGLAQTGSG 107
Query: 226 KTLAFGLPIMQRLLEE 241
KT AF LPI+ RL E+
Sbjct: 108 KTAAFALPILHRLAED 123
Score = 63 (27.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 461 LEESFIECKEEDKDAYLYYILS-VHGQG-RT-IVFCTSIAALRHISSLLKILGIDVWTLH 517
L + FI ++ K+ YL +ILS + +G R+ ++F ++ + +S +L L ++ +H
Sbjct: 274 LTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMH 333
Query: 518 AQMQQRARLKLFSQ 531
+ Q RL S+
Sbjct: 334 SLNSQSMRLSALSK 347
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 255 (94.8 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 73/216 (33%), Positives = 110/216 (50%)
Query: 176 AWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
+W L+ LHPL++ ++ L F TP+Q A IP + KDV A TGSGKTLAF +P
Sbjct: 8 SWESLQVPLHPLVLGALRELGFLHMTPVQSATIPLFM-RNKDVAAEAVTGSGKTLAFVIP 66
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-N 292
I++ LL EK K + A++ITPTRELA+Q+ + L K
Sbjct: 67 ILEILLRREEKLKK---------------NQVGAIVITPTRELAIQIDEVLSHFTKHFPQ 111
Query: 293 VRVVPIVGGMST-EKQERLLKARPEVVVGTPGRLWELMSGGEKHL---VELHTLSFFVLD 348
+ +GG + E ER + ++V TPGRL ++ + L + +L VLD
Sbjct: 112 FSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLD 171
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
EADR+++ G + +I++ LP + + QTQ
Sbjct: 172 EADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQ 207
Score = 82 (33.9 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 34/138 (24%), Positives = 63/138 (45%)
Query: 402 FSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAI------VDLTNMC 455
F A+I +F K + L S +E L RAG+R V I V ++
Sbjct: 181 FEASINTILEFLPKQRRTGLFSATQTQ---EVENLV-RAGLRNPVRISVKEKGVAASSTQ 236
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKIL--GIDV 513
++LE ++ CK ++K L + L Q + +VF ++ A + + L+ L + +
Sbjct: 237 KTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALVQRVKI 296
Query: 514 WTLHAQMQQRARLKLFSQ 531
+H +M+ + R K+F +
Sbjct: 297 LCIHGKMKYK-RNKIFME 313
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 275 (101.9 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 68/191 (35%), Positives = 108/191 (56%)
Query: 180 LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLL 239
L L L+++I + +PTP+Q+ IPA QG+D++ AA+TG+GKT F LPI++RL
Sbjct: 6 LGLSEALVRAIEAAGYTQPTPVQQRAIPAVL-QGRDLMVAAQTGTGKTGGFALPILERLF 64
Query: 240 EEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIV 299
+ DK ++++ P+ R L++TPTRELA QV + K A+ + I
Sbjct: 65 PNG------VPDK---SQRHGPR-QPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIF 114
Query: 300 GGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
GG+ Q + + +V+V PGRL +L G V+L + VLDEADRM++ G
Sbjct: 115 GGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGS---VDLSHVEILVLDEADRMLDMGFV 171
Query: 360 RELQSIIDMLP 370
+++ ++ LP
Sbjct: 172 HDVKKVLARLP 182
Score = 55 (24.4 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 18/97 (18%), Positives = 40/97 (41%)
Query: 431 NSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTI 490
N I +L+ + + N +++T ++E+ K + L ++++V + +
Sbjct: 196 NDITSLAGK--LLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVL 253
Query: 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
VF + ++ L G+ +H Q AR K
Sbjct: 254 VFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTK 290
Score = 40 (19.1 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 396 KRQTLVFSATIA 407
KRQ L+FSAT +
Sbjct: 184 KRQNLLFSATFS 195
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 188 (71.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 62/237 (26%), Positives = 106/237 (44%)
Query: 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327
L++TPTRELA Q+ + + GI + IVGG+ Q L RP ++V TPGRL +
Sbjct: 116 LVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVD 175
Query: 328 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCV 387
+ + L L F ++DEADR++ EL I+ ++P + + T+
Sbjct: 176 HLENTKGF--NLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKK-- 231
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRK--KLKHGSLKSKQSVNGLNSIETLSERAGMRAN 445
VS L+R +L A +++S+ ++ LK + + L+E AG A
Sbjct: 232 -VSKLERA---SLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAI 287
Query: 446 VAIVDLTNMCVLANKLEESFIECK----EEDKDAYLYYILSVHGQGRTIVFCTSIAA 498
V +A L + ++ + ++ L + + R I+ CT +AA
Sbjct: 288 VFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAA 344
Score = 152 (58.6 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 162 EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAE 221
EE+ + E + ++ EL + L + RL + +P+ IQ+A +P A QGKDVIG AE
Sbjct: 31 EEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHAL-QGKDVIGLAE 89
Query: 222 TGSGKTLAFGLPIMQRLLE 240
TGSGKT AF +P++Q LL+
Sbjct: 90 TGSGKTGAFAIPVLQSLLD 108
Score = 129 (50.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIA 497
ERA +R + A V +++ + L++ +I + K+ YL Y+L+ H IVFC + A
Sbjct: 236 ERASLR-DPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCA 294
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARL 526
I+ +L+ LG+ LH QM Q RL
Sbjct: 295 TTMQIAVMLRQLGMQAVPLHGQMSQEKRL 323
>GENEDB_PFALCIPARUM|PF14_0429 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 293 (108.2 bits), Expect = 5.6e-23, P = 5.6e-23
Identities = 76/231 (32%), Positives = 125/231 (54%)
Query: 161 EEELVNEAEISTEFDA--WNE----LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGK 214
EEEL + I + WN LH + MKS++ F +PT IQ + + +
Sbjct: 217 EEELEKDNNIKYKIHCNNWNNGGKIFILHSV-MKSLFDNAFFKPTEIQSKTLEKSINDKN 275
Query: 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274
D++ ++TG+GKTL F LPI+ +L + K K K + +K+ R LI+ PTR
Sbjct: 276 DIVVISKTGTGKTLTFCLPILNNILINKLKEYKK---KLKNIQKF------RCLILVPTR 326
Query: 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WEL-MSGG 332
ELALQ+ H + K IN+ + I+GG++ KQ+R+L +PE+++ TPGRL + L +
Sbjct: 327 ELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPGRLKYFLHLENP 386
Query: 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQT 383
K++ ++ + + V DE D+MIE +++ I + + G K + QT
Sbjct: 387 IKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLIQT 437
Score = 200 (75.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 63/208 (30%), Positives = 109/208 (52%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R LI+ PTRELALQ+ H + K IN+ + I+GG++ KQ+R+L +PE+++ TPGRL
Sbjct: 318 RCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPGRL 377
Query: 326 -WEL-MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQT 383
+ L + K++ ++ + + V DE D+MIE +++ I + + G K + QT
Sbjct: 378 KYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLIQT 437
Query: 384 QNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL--KSKQSVNGLNSIETLSERAG 441
+S+ TL S T+ L D KL + + K K + L++ + +
Sbjct: 438 ---FLLSA-------TL--SLTVQLQNDNMTKLLNSIIIRKDKSFIINLSNEQNVYND-- 483
Query: 442 MRANVAIVDLTNMCVLANKLEESFIECK 469
+N+ + +L + ++ KL E I CK
Sbjct: 484 -NSNI-LPELLTLYIV--KLNERDIVCK 507
>UNIPROTKB|Q8IL21 [details] [associations]
symbol:PF14_0429 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P10081 RefSeq:XP_001348603.1
ProteinModelPortal:Q8IL21 PRIDE:Q8IL21
EnsemblProtists:PF14_0429:mRNA GeneID:812011 KEGG:pfa:PF14_0429
EuPathDB:PlasmoDB:PF3D7_1445200 HOGENOM:HOG000282109
ProtClustDB:CLSZ2431945 Uniprot:Q8IL21
Length = 796
Score = 293 (108.2 bits), Expect = 5.6e-23, P = 5.6e-23
Identities = 76/231 (32%), Positives = 125/231 (54%)
Query: 161 EEELVNEAEISTEFDA--WNE----LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGK 214
EEEL + I + WN LH + MKS++ F +PT IQ + + +
Sbjct: 217 EEELEKDNNIKYKIHCNNWNNGGKIFILHSV-MKSLFDNAFFKPTEIQSKTLEKSINDKN 275
Query: 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274
D++ ++TG+GKTL F LPI+ +L + K K K + +K+ R LI+ PTR
Sbjct: 276 DIVVISKTGTGKTLTFCLPILNNILINKLKEYKK---KLKNIQKF------RCLILVPTR 326
Query: 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WEL-MSGG 332
ELALQ+ H + K IN+ + I+GG++ KQ+R+L +PE+++ TPGRL + L +
Sbjct: 327 ELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPGRLKYFLHLENP 386
Query: 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQT 383
K++ ++ + + V DE D+MIE +++ I + + G K + QT
Sbjct: 387 IKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLIQT 437
Score = 200 (75.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 63/208 (30%), Positives = 109/208 (52%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R LI+ PTRELALQ+ H + K IN+ + I+GG++ KQ+R+L +PE+++ TPGRL
Sbjct: 318 RCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPGRL 377
Query: 326 -WEL-MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQT 383
+ L + K++ ++ + + V DE D+MIE +++ I + + G K + QT
Sbjct: 378 KYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLIQT 437
Query: 384 QNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL--KSKQSVNGLNSIETLSERAG 441
+S+ TL S T+ L D KL + + K K + L++ + +
Sbjct: 438 ---FLLSA-------TL--SLTVQLQNDNMTKLLNSIIIRKDKSFIINLSNEQNVYND-- 483
Query: 442 MRANVAIVDLTNMCVLANKLEESFIECK 469
+N+ + +L + ++ KL E I CK
Sbjct: 484 -NSNI-LPELLTLYIV--KLNERDIVCK 507
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 180 (68.4 bits), Expect = 5.8e-23, Sum P(3) = 5.8e-23
Identities = 51/142 (35%), Positives = 78/142 (54%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPG 323
++AL++ PTRELA QV ++ + + I N++V+ + GGM Q L+ ++VGTPG
Sbjct: 73 VQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPG 132
Query: 324 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP------MTNGSNK 377
R+ + +S L EL+TL VLDEADRM+E G L++II P + + +
Sbjct: 133 RILDHLSKDRIDLSELNTL---VLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYP 189
Query: 378 GQSEQTQNCVTVSSLQRKKRQT 399
EQ VT ++L K T
Sbjct: 190 ASIEQIAQSVTRNALMIKVEAT 211
Score = 125 (49.1 bits), Expect = 5.8e-23, Sum P(3) = 5.8e-23
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 180 LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLL 239
L L P L+ ++ + F TPIQ +PA +G+DVIG +TGSGKT AFGL ++ L
Sbjct: 9 LNLKPELLANLETMGFATMTPIQAQSLPAIL-KGQDVIGQGKTGSGKTAAFGLGVLSNLN 67
Query: 240 EEREKA-AKMLEDKGEEAEKYA 260
+R + A +L E A++ A
Sbjct: 68 VKRFRVQALVLCPTRELADQVA 89
Score = 73 (30.8 bits), Expect = 5.8e-23, Sum P(3) = 5.8e-23
Identities = 23/95 (24%), Positives = 45/95 (47%)
Query: 432 SIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK-EEDKDAYLYYILSVHGQGRTI 490
SIE +++ A + V+ T+ + + + F + + +D L +L H ++
Sbjct: 191 SIEQIAQSVTRNALMIKVEATHD---TSSIRQYFYKVEGSAARDEALETLLLHHQPTSSV 247
Query: 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
VFC + +++++ L G V LH M+QR R
Sbjct: 248 VFCNTKREVQNVADALHQSGFSVIELHGDMEQRER 282
Score = 42 (19.8 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 396 KRQTLVFSATIALSAD 411
+RQTL+FSAT S +
Sbjct: 178 ERQTLLFSATYPASIE 193
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 187 (70.9 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
Identities = 47/127 (37%), Positives = 69/127 (54%)
Query: 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMS 303
K A L E + ++ + RALI++PTRELALQ K + K ++ I+GG
Sbjct: 146 KTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 205
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
E Q L P++++ TPGRL + E +L +L ++ + V DEADR+ E G +LQ
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAV--EMNL-KLQSVEYVVFDEADRLFEMGFAEQLQ 262
Query: 364 SIIDMLP 370
II LP
Sbjct: 263 EIIGRLP 269
Score = 120 (47.3 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
+ K I + +K PTPIQ+ IP GKDV+ A TGSGKT F +P+ +RL
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIPMIL-DGKDVVAMARTGSGKTACFLIPMFERL 158
Score = 83 (34.3 bits), Expect = 6.5e-23, Sum P(3) = 6.5e-23
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 439 RAGMRANVAI-VDLTNMCVLANKLEESFIECKEEDKDAYLYYILS--VHGQGRTIVFCTS 495
RAG+ V I +D+ + L +L+ SF +E+ K A L ++L V Q +T+VF +
Sbjct: 290 RAGLTEPVLIRLDVDSK--LNEQLKTSFFLVREDAKAAVLLHLLRNVVRPQDQTVVFVAT 347
Query: 496 IAALRHISSLLKILGIDVWTLHAQMQQRAR 525
++S LL G+ +++ + Q AR
Sbjct: 348 KHHAEYLSELLATQGVSCAHIYSALDQTAR 377
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 183 (69.5 bits), Expect = 8.1e-23, Sum P(3) = 8.1e-23
Identities = 43/105 (40%), Positives = 61/105 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
RALI++PTRELALQ K + K ++ I+GG E Q L P++++ TPGRL
Sbjct: 167 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 226
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ E +L +L ++ + V DEADR+ E G +LQ II LP
Sbjct: 227 VHVAV--EMNL-KLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268
Score = 127 (49.8 bits), Expect = 8.1e-23, Sum P(3) = 8.1e-23
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
S VS+ D E + + + + + + L + K I + +K PTPIQ+ IP
Sbjct: 70 SECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
GKDV+ A TGSGKT F LP+ +RL
Sbjct: 130 L-DGKDVVAMARTGSGKTACFLLPMFERL 157
Score = 80 (33.2 bits), Expect = 8.1e-23, Sum P(3) = 8.1e-23
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 439 RAGMRANVAI-VDLTNMCVLANKLEESFIECKEEDKDAYLYYILS--VHGQGRTIVFCTS 495
RAG+ V I +D+ + L +L+ SF +E+ K A L Y+L V Q + +VF +
Sbjct: 289 RAGLTEPVLIRLDVDSK--LNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVFVAT 346
Query: 496 IAALRHISSLLKILGIDVWTLHAQMQQRAR 525
+++ LL G+ +++ + Q AR
Sbjct: 347 KHHAEYLTELLTGQGVSCAHIYSALDQTAR 376
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 273 (101.2 bits), Expect = 9.1e-23, Sum P(2) = 9.1e-23
Identities = 69/191 (36%), Positives = 106/191 (55%)
Query: 180 LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLL 239
L L L+ +I + +PTP+Q+ IPA QG+D++ AA+TG+GKT F LPI++RL
Sbjct: 6 LGLSEALVGAIEAAGYTQPTPVQQRAIPAVL-QGRDLMVAAQTGTGKTGGFALPILERLF 64
Query: 240 EEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIV 299
DK ++++ P+ R L++TPTRELA QV D K A+ + I
Sbjct: 65 PNGHP------DK---SQRHGPR-QPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIF 114
Query: 300 GGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
GG+ Q + + +V+V PGRL +L G V+L + VLDEADRM++ G
Sbjct: 115 GGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGS---VDLSHVEILVLDEADRMLDMGFV 171
Query: 360 RELQSIIDMLP 370
+++ ++ LP
Sbjct: 172 HDVKKVLARLP 182
Score = 59 (25.8 bits), Expect = 9.1e-23, Sum P(2) = 9.1e-23
Identities = 21/118 (17%), Positives = 46/118 (38%)
Query: 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAG-MRANVAIVDLTNMCVLANKLEESFIECK 469
D +K L K + + + +++ AG + N +++T ++E+
Sbjct: 173 DVKKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLP 232
Query: 470 EEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
K A L ++++ + +VF + ++ L G+ +H Q AR K
Sbjct: 233 ASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTK 290
Score = 47 (21.6 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 396 KRQTLVFSATIALS-ADFRKKLKH 418
KRQ L+FSAT + D KL H
Sbjct: 184 KRQNLLFSATFSKDITDLAGKLLH 207
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 204 (76.9 bits), Expect = 9.1e-23, Sum P(2) = 9.1e-23
Identities = 42/114 (36%), Positives = 71/114 (62%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L+++PTRELA+Q ++L + +G N++ V + GG +Q R K V++GTPGRL
Sbjct: 238 RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVIIGTPGRL 296
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP--MTNGSNK 377
+L++ G ++ + + VLDEADRM++ G +++++II P NGS +
Sbjct: 297 LDLINDGS---IDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQ 347
Score = 135 (52.6 bits), Expect = 9.1e-23, Sum P(2) = 9.1e-23
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL--LEEREKAAKML 249
+KEPTPIQ A P G+DV+G AETGSGKT+AFG+P +Q L L + + ++L
Sbjct: 185 YKEPTPIQAATWPYLL-AGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVL 240
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 378 GQSEQTQNCV--TVSSLQRKKRQTLVFSATI-----ALSADFRK---KLKHGSLKSKQSV 427
G + +N + T + RQT+ FSAT AL+A F K K+ GS + S
Sbjct: 325 GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQ 384
Query: 428 NGLNSIETLSE 438
N +E L +
Sbjct: 385 NITQIVEILDD 395
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 183 (69.5 bits), Expect = 9.1e-23, Sum P(3) = 9.1e-23
Identities = 44/111 (39%), Positives = 67/111 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVG 320
K +++++I PTRELA QV L+ +A+GI N++++ + GG Q L+ V+VG
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVG 135
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371
TPGRL E + G ++L L+ VLDEADRM+E G L +I+ P+
Sbjct: 136 TPGRLEEHVIKGT---LQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Score = 134 (52.2 bits), Expect = 9.1e-23, Sum P(3) = 9.1e-23
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A++ L L L+K++ L +++ TPIQ +P +GKDVIG A+TGSGKT AFGL ++
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELL-KGKDVIGEAKTGSGKTAAFGLALL 69
Query: 236 QRLLEEREKAAKML 249
+L ++ + M+
Sbjct: 70 NKLEVKKFRIQSMV 83
Score = 59 (25.8 bits), Expect = 9.1e-23, Sum P(3) = 9.1e-23
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 461 LEESFIECKEEDK--DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHA 518
+ + F + +D DA +L + T +FC + + ++ L G V LH
Sbjct: 223 ISQKFFKVGNDDDRLDALRLLLLGNQVES-TAIFCNTKKETQQVADALHFDGFSVLALHG 281
Query: 519 QMQQRAR 525
++QR R
Sbjct: 282 DLEQRDR 288
Score = 52 (23.4 bits), Expect = 4.8e-22, Sum P(3) = 4.8e-22
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIE--TLSERAGMRANVAI-VDLTN 453
RQTL+FSAT D K + + V +S + T+S++ N +D
Sbjct: 185 RQTLLFSATFP---DQIKSISESIMTDPVMVKIASSEDQSTISQKFFKVGNDDDRLDALR 241
Query: 454 MCVLANKLEESFIEC--KEEDK---DAYLYY----ILSVHG 485
+ +L N++E + I C K+E + DA L++ +L++HG
Sbjct: 242 LLLLGNQVESTAIFCNTKKETQQVADA-LHFDGFSVLALHG 281
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 183 (69.5 bits), Expect = 9.1e-23, Sum P(3) = 9.1e-23
Identities = 44/111 (39%), Positives = 67/111 (60%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVG 320
K +++++I PTRELA QV L+ +A+GI N++++ + GG Q L+ V+VG
Sbjct: 76 KFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVG 135
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371
TPGRL E + G ++L L+ VLDEADRM+E G L +I+ P+
Sbjct: 136 TPGRLEEHVIKGT---LQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Score = 134 (52.2 bits), Expect = 9.1e-23, Sum P(3) = 9.1e-23
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A++ L L L+K++ L +++ TPIQ +P +GKDVIG A+TGSGKT AFGL ++
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELL-KGKDVIGEAKTGSGKTAAFGLALL 69
Query: 236 QRLLEEREKAAKML 249
+L ++ + M+
Sbjct: 70 NKLEVKKFRIQSMV 83
Score = 59 (25.8 bits), Expect = 9.1e-23, Sum P(3) = 9.1e-23
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 461 LEESFIECKEEDK--DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHA 518
+ + F + +D DA +L + T +FC + + ++ L G V LH
Sbjct: 223 ISQKFFKVGNDDDRLDALRLLLLGNQVES-TAIFCNTKKETQQVADALHFDGFSVLALHG 281
Query: 519 QMQQRAR 525
++QR R
Sbjct: 282 DLEQRDR 288
Score = 52 (23.4 bits), Expect = 4.8e-22, Sum P(3) = 4.8e-22
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIE--TLSERAGMRANVAI-VDLTN 453
RQTL+FSAT D K + + V +S + T+S++ N +D
Sbjct: 185 RQTLLFSATFP---DQIKSISESIMTDPVMVKIASSEDQSTISQKFFKVGNDDDRLDALR 241
Query: 454 MCVLANKLEESFIEC--KEEDK---DAYLYY----ILSVHG 485
+ +L N++E + I C K+E + DA L++ +L++HG
Sbjct: 242 LLLLGNQVESTAIFCNTKKETQQVADA-LHFDGFSVLALHG 281
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 291 (107.5 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 77/230 (33%), Positives = 127/230 (55%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W E L ++++I +L +++P+PIQ IP + G+D++G AETGSGKT AF +P++
Sbjct: 415 WQESNLPREILEAIRQLGYEKPSPIQMQSIPISL-TGRDILGIAETGSGKTCAFVIPMLI 473
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+ K ++ +D EA+ P AL++ PTREL Q+ + A+ RVV
Sbjct: 474 YI----SKQPRLTKDT--EAD--GPY----ALVMAPTRELVQQIEKETRNFAQHFGFRVV 521
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+VGG S E Q + E+++ TPGRL + + EK + L+ ++ VLDEAD MI+
Sbjct: 522 SLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCL---EKRYLVLNQCNYIVLDEADMMIDL 578
Query: 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
G ++ S++D +P + K + ++ S R T++FSAT+
Sbjct: 579 GFEPQVTSVLDAMP--SSFLKSEDDEMAE-KQESDRSHIYRTTILFSATM 625
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 258 (95.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 73/222 (32%), Positives = 117/222 (52%)
Query: 159 DAEEELVN-EAEISTE-FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
DAE +L + E + + + E L + K++ + + TPIQ+ +P HQG D+
Sbjct: 323 DAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLV-HQGYDI 381
Query: 217 IGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276
+ A+TGSGKT AF LPIM RL+++ L GE Y P R +I+TPTREL
Sbjct: 382 MACAQTGSGKTAAFLLPIMTRLIDDNN-----LNTAGEGG-CY-P----RCIILTPTREL 430
Query: 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHL 336
A Q+ + + A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 431 ADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT--- 487
Query: 337 VELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNK 377
++L FFVLDEADRMI+ G ++++I++ M N+
Sbjct: 488 IKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENR 529
Score = 79 (32.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 37/155 (23%), Positives = 65/155 (41%)
Query: 378 GQSEQTQNCVTVSSLQRKK-RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETL 436
G + V S+ RK+ RQTL+FSAT D ++ L+ N +
Sbjct: 509 GFGTDIETIVNYDSMPRKENRQTLMFSATFP---DSVQEAARAFLRE-------NYVMIA 558
Query: 437 SERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSI 496
++ G AN ++ C + K ++ +E D D+Y + +T+VF +
Sbjct: 559 IDKIGA-ANKCVLQEFERCERSEK-KDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQR 616
Query: 497 AALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
A ++S+L + T+H +QR R + Q
Sbjct: 617 AMADTLASILSSAQVPAITIHGAREQRERSEALRQ 651
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 258 (95.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 73/222 (32%), Positives = 117/222 (52%)
Query: 159 DAEEELVN-EAEISTE-FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDV 216
DAE +L + E + + + E L + K++ + + TPIQ+ +P HQG D+
Sbjct: 323 DAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLV-HQGYDI 381
Query: 217 IGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276
+ A+TGSGKT AF LPIM RL+++ L GE Y P R +I+TPTREL
Sbjct: 382 MACAQTGSGKTAAFLLPIMTRLIDDNN-----LNTAGEGG-CY-P----RCIILTPTREL 430
Query: 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHL 336
A Q+ + + A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 431 ADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT--- 487
Query: 337 VELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNK 377
++L FFVLDEADRMI+ G ++++I++ M N+
Sbjct: 488 IKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENR 529
Score = 79 (32.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 37/155 (23%), Positives = 65/155 (41%)
Query: 378 GQSEQTQNCVTVSSLQRKK-RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETL 436
G + V S+ RK+ RQTL+FSAT D ++ L+ N +
Sbjct: 509 GFGTDIETIVNYDSMPRKENRQTLMFSATFP---DSVQEAARAFLRE-------NYVMIA 558
Query: 437 SERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSI 496
++ G AN ++ C + K ++ +E D D+Y + +T+VF +
Sbjct: 559 IDKIGA-ANKCVLQEFERCERSEK-KDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQR 616
Query: 497 AALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
A ++S+L + T+H +QR R + Q
Sbjct: 617 AMADTLASILSSAQVPAITIHGAREQRERSEALRQ 651
>UNIPROTKB|G4MSR4 [details] [associations]
symbol:MGG_07099 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_003715292.1 EnsemblFungi:MGG_07099T0
GeneID:2682984 KEGG:mgr:MGG_07099 Uniprot:G4MSR4
Length = 717
Score = 285 (105.4 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 77/218 (35%), Positives = 131/218 (60%)
Query: 159 DAEEEL-VNEAEIS-TEFDAWNELRLHPLLMKSI-YRLQFKEPTPIQKACIPAAAHQGKD 215
+A++EL V T+F + + ++K+I +++++ T +Q + A A +GKD
Sbjct: 59 EAQQELSVQPGSTKITKFSDLAKANIDESIIKAITVDMRYEDMTDVQSMTL-APALKGKD 117
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275
++ A+TG+GKTLAF +P++Q++L+ + + K + +G ++A + ++A+II+PTRE
Sbjct: 118 LVAQAKTGTGKTLAFLIPVIQKILDA-DPSLKEVS-RGRP-RRFAQRQSIKAIIISPTRE 174
Query: 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPE---VVVGTPGRLWELMSGG 332
LA Q+ + + V V VGG T K+E L + E ++VGTPGRL +L+S
Sbjct: 175 LAEQIGKEATRLCQRNGVTVQTAVGG--TGKRESLRRIHMEGCHLLVGTPGRLNDLLSD- 231
Query: 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
E ++ + VLDEADRM++ G EL+SI+DMLP
Sbjct: 232 ELSGIDASNVQALVLDEADRMLDVGFENELRSIVDMLP 269
Score = 44 (20.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 393 QRKKRQTLVFSATI 406
Q+ RQTL+FSAT+
Sbjct: 272 QQVPRQTLLFSATL 285
Score = 39 (18.8 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 512 DVWTLHAQMQQRARLK 527
+V+ +HAQ+ Q R K
Sbjct: 387 EVFHIHAQLSQNQRTK 402
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 251 (93.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 73/216 (33%), Positives = 109/216 (50%)
Query: 176 AWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
AW L+ LHP ++ ++ L F TP+Q A IP + KDV A TGSGKTLAF +P
Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFM-KNKDVAAEAVTGSGKTLAFVIP 66
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-N 292
I++ LL EK K + A++ITPTRELA+Q+ + L K
Sbjct: 67 ILEILLRREEKLKK---------------NQVGAIVITPTRELAIQIDEVLSHFTKHFPQ 111
Query: 293 VRVVPIVGGMST-EKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE---LHTLSFFVLD 348
+ +GG + E ER + ++V TPGRL ++ + L + +L VLD
Sbjct: 112 FSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLD 171
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
EADR+++ G + +I++ LP + + QTQ
Sbjct: 172 EADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQ 207
Score = 82 (33.9 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 34/138 (24%), Positives = 63/138 (45%)
Query: 402 FSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAI------VDLTNMC 455
F A+I +F K + L S +E L RAG+R V I V ++
Sbjct: 181 FEASINTILEFLPKQRRTGLFSATQTQ---EVENLV-RAGLRNPVRISVKEKGVAASSTQ 236
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKIL--GIDV 513
++LE ++ CK ++K L + L Q + +VF ++ A + + L+ L + +
Sbjct: 237 KTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKI 296
Query: 514 WTLHAQMQQRARLKLFSQ 531
+H +M+ + R K+F +
Sbjct: 297 LCIHGKMKYK-RNKIFME 313
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 197 (74.4 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 45/119 (37%), Positives = 72/119 (60%)
Query: 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKA 313
E+ + ++ K R LI++P+RELALQ +K + KG +++ V +VGG S E+Q ++
Sbjct: 151 EKLKSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAG 210
Query: 314 RPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372
P++V+ TPGR L E +L +L ++ + V DEADR+ E G +L I+ LP T
Sbjct: 211 NPDIVIATPGRFLHLKV--EMNL-DLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPST 266
Score = 129 (50.5 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEE 241
L+ L+K+I R F PTPIQ+ IP + +DV+G A TGSGKT AF +P++++L
Sbjct: 98 LNANLLKAIARKGFSVPTPIQRKTIPVIM-EDQDVVGMARTGSGKTAAFVIPMIEKLKSH 156
Query: 242 REK 244
K
Sbjct: 157 STK 159
Score = 54 (24.1 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 415 KLKHGSLKSKQSVNGLNSI-ETLSE--RAGMRANVAIVDLTNMCVLANKLEESFIECKEE 471
++ HG ++Q++ ++ ++L E RAG++ + +V L ++ L+ +F K
Sbjct: 258 EILHGLPSTRQTLLFSATLPKSLVEFARAGLQ-DPTLVRLDTESKISPDLQNAFFSVKSA 316
Query: 472 DKDAYLYYILS 482
+K+ L YIL+
Sbjct: 317 EKEGALLYILN 327
Score = 45 (20.9 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
TIVF + + ++ SLL+ G V ++ + Q AR
Sbjct: 376 TIVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTAR 412
Score = 42 (19.8 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 397 RQTLVFSATIALS 409
RQTL+FSAT+ S
Sbjct: 267 RQTLLFSATLPKS 279
Score = 41 (19.5 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 200 PIQKACIPAAAHQGKDVIGAAETG 223
P ++ +PAA + D +G A G
Sbjct: 35 PTKRKKVPAAPNVNLDFLGEANAG 58
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 192 (72.6 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 45/116 (38%), Positives = 69/116 (59%)
Query: 257 EKYAPKGH-LRALIITPTRELALQVTDHLKGV-AKGINVRVVPIVGGMSTEKQERLLKAR 314
EK P+ ++ALI+ PTRELALQ+T +K + + ++ V+ I GG +Q R LK
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 315 PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+VV TPGRL + + + ++L LS VLDEAD+M+ G +++ I+D P
Sbjct: 125 THIVVATPGRLLDHI---RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 177
Score = 121 (47.7 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
E TPIQ+ IP GKD+IG A+TG+GKTLAF LPI++++
Sbjct: 27 EATPIQEKAIPVIL-SGKDIIGQAKTGTGKTLAFVLPILEKI 67
Score = 57 (25.1 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 22/96 (22%), Positives = 39/96 (40%)
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
V + +E+ IE + K L +++ ++FC + + LK LG +
Sbjct: 214 VTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAE 273
Query: 516 LHAQMQQRAR---LKLFSQM-ITWIRKRPKGDRGKD 547
LH + Q R +K F + I ++ RG D
Sbjct: 274 LHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLD 309
Score = 49 (22.3 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVV 319
A+I T+ A ++ D+LKG+ G N + G + K+ER++K+ E +
Sbjct: 247 AVIFCRTKVRASKLYDNLKGL--GYNC--AELHGDIPQAKRERVMKSFREAKI 295
Score = 41 (19.5 bits), Expect = 9.3e-21, Sum P(3) = 9.3e-21
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLN---SIETLSERAGMRANVAIVDLTN 453
+QT++FSATI D KKL + Q + + +++T+ +R + A D
Sbjct: 180 KQTMLFSATIP--KDI-KKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALR 236
Query: 454 MCVLANKLEESFIECKEEDKDAYLY 478
+ ++ + I C+ + + + LY
Sbjct: 237 FVMDRDQPFLAVIFCRTKVRASKLY 261
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 192 (72.6 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 45/116 (38%), Positives = 69/116 (59%)
Query: 257 EKYAPKGH-LRALIITPTRELALQVTDHLKGV-AKGINVRVVPIVGGMSTEKQERLLKAR 314
EK P+ ++ALI+ PTRELALQ+T +K + + ++ V+ I GG +Q R LK
Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 315 PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+VV TPGRL + + + ++L LS VLDEAD+M+ G +++ I+D P
Sbjct: 125 THIVVATPGRLLDHI---RRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 177
Score = 121 (47.7 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
E TPIQ+ IP GKD+IG A+TG+GKTLAF LPI++++
Sbjct: 27 EATPIQEKAIPVIL-SGKDIIGQAKTGTGKTLAFVLPILEKI 67
Score = 57 (25.1 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 22/96 (22%), Positives = 39/96 (40%)
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
V + +E+ IE + K L +++ ++FC + + LK LG +
Sbjct: 214 VTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAE 273
Query: 516 LHAQMQQRAR---LKLFSQM-ITWIRKRPKGDRGKD 547
LH + Q R +K F + I ++ RG D
Sbjct: 274 LHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLD 309
Score = 49 (22.3 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVV 319
A+I T+ A ++ D+LKG+ G N + G + K+ER++K+ E +
Sbjct: 247 AVIFCRTKVRASKLYDNLKGL--GYNC--AELHGDIPQAKRERVMKSFREAKI 295
Score = 41 (19.5 bits), Expect = 9.3e-21, Sum P(3) = 9.3e-21
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLN---SIETLSERAGMRANVAIVDLTN 453
+QT++FSATI D KKL + Q + + +++T+ +R + A D
Sbjct: 180 KQTMLFSATIP--KDI-KKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALR 236
Query: 454 MCVLANKLEESFIECKEEDKDAYLY 478
+ ++ + I C+ + + + LY
Sbjct: 237 FVMDRDQPFLAVIFCRTKVRASKLY 261
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 172 (65.6 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 41/113 (36%), Positives = 65/113 (57%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P G + L++TPTRELA Q+ + + + K + ++ IVGGM Q L +P VV+
Sbjct: 68 PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIA 126
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG--HFR-ELQSIIDMLP 370
TPGRL + + + + + F VLDEADR++E G F +L++I+ +P
Sbjct: 127 TPGRLADHLRSS--NTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVP 177
Score = 163 (62.4 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
ELRL L++ +L K+PTP+Q CIPA +G+D +G A+TGSGKT AF LPI+Q+L
Sbjct: 6 ELRLSSWLVEQCRQLGLKQPTPVQLGCIPAIL-EGRDCLGCAKTGSGKTAAFVLPILQKL 64
Query: 239 LEE 241
E+
Sbjct: 65 SED 67
Score = 67 (28.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 29/152 (19%), Positives = 57/152 (37%)
Query: 379 QSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSE 438
+S T N + L + L+ +AD L + + + +TL E
Sbjct: 136 RSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQTLLFSATLTDTLKE 195
Query: 439 RAGMRANVAIVDLTNMCV-LANKLEESFIECKEEDKDAYLYYILSVHGQG----RTIVFC 493
G+ N V +L++ ++ E+ KDAYL +++ I+F
Sbjct: 196 LQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFT 255
Query: 494 TSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
+ + + +L+ LH+ M+Q+ R
Sbjct: 256 NTCKTCQILCMMLRKFNFPTVALHSMMKQKER 287
Score = 53 (23.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
+G ++ T + T+ S +RQTL+FSAT+
Sbjct: 160 QGCTDFTADLETILSAVPARRQTLLFSATL 189
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 237 (88.5 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 74/216 (34%), Positives = 109/216 (50%)
Query: 176 AWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
+W L LHP ++ + L F TP+Q A IP + KDV A TGSGKTLAF +P
Sbjct: 8 SWESLPVPLHPQVLSVLRELGFPYMTPVQSATIPLFM-KNKDVAAEAVTGSGKTLAFVIP 66
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-N 292
I++ LL RE EK+ K + A+IITPTRELA+Q+ + L K
Sbjct: 67 IVEILLR-RE-------------EKFK-KSQVGAIIITPTRELAVQIEEVLSHFTKPFPQ 111
Query: 293 VRVVPIVGGMST-EKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE---LHTLSFFVLD 348
+ +GG + E R + ++V TPGRL ++ + L + +L VLD
Sbjct: 112 FSQILWIGGRNPGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLD 171
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
EADR+++ G + +I++ LP + + QTQ
Sbjct: 172 EADRLLDMGFETSINTILEFLPKQRRTGLFSATQTQ 207
Score = 95 (38.5 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 35/138 (25%), Positives = 64/138 (46%)
Query: 402 FSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAI------VDLTNMC 455
F +I +F K + L S +E L RAG+R V I V ++
Sbjct: 181 FETSINTILEFLPKQRRTGLFSATQTQ---EVENLV-RAGLRNPVRISVKEKGVAASSTQ 236
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKIL--GIDV 513
++LE ++ CK ++K L + L H Q + +VF ++ A + + L+ L G+ +
Sbjct: 237 KTPSRLENHYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKI 296
Query: 514 WTLHAQMQQRARLKLFSQ 531
+H +M+ + R K+F +
Sbjct: 297 MCIHGKMKYK-RNKIFME 313
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 160 (61.4 bits), Expect = 2.9e-22, Sum P(3) = 2.9e-22
Identities = 37/89 (41%), Positives = 58/89 (65%)
Query: 161 EEELVNEAEISTEFD---AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVI 217
++E + E ++E+D ++ ++ L L+K+I L FK+PTPIQKACIP GKD+
Sbjct: 163 QKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGL-LGKDIC 221
Query: 218 GAAETGS-GKTLAFGLPIMQRLLEEREKA 245
A TG+ GKT AF LP+++RL+ + +A
Sbjct: 222 ACAATGTVGKTAAFILPVLERLIYKPRQA 250
Score = 159 (61.0 bits), Expect = 2.9e-22, Sum P(3) = 2.9e-22
Identities = 42/138 (30%), Positives = 73/138 (52%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R L++ PTREL +QV K +A+ +V VGG+ + QE L++ P++++ TPGRL
Sbjct: 254 RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRL 313
Query: 326 WE-LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
+ L + HL + L +LDEADRM++ +++ II + + + T+
Sbjct: 314 IDHLHNCPSFHLSSVEVL---ILDEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTE 370
Query: 385 NCVTVSSLQRKKRQTLVF 402
++S+ K T +F
Sbjct: 371 EVKDLASVSLKN-PTRIF 387
Score = 65 (27.9 bits), Expect = 2.9e-22, Sum P(3) = 2.9e-22
Identities = 24/101 (23%), Positives = 48/101 (47%)
Query: 435 TLSERAGMRANVAIVDLTNMCVLANK-----LEESFIECK---EEDKDAYLYYILSVHGQ 486
T++E A+V++ + T + V +N L + FI + E D++A + +L+
Sbjct: 367 TMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLTRTFP 426
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
++F + + LL ++G+ V LH + Q RL+
Sbjct: 427 DHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLE 467
Score = 42 (19.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 381 EQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKS 423
EQ + + + S + RQT++FSAT+ K L SLK+
Sbjct: 346 EQMKEIIRLCS---RHRQTMLFSATMTEEV---KDLASVSLKN 382
Score = 37 (18.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275
MQ+ + KA K LE+ +EA A KG R+ TRE
Sbjct: 586 MQQSEAQINKAKKQLEEGKQEA---ATKGVERSWF--QTRE 621
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 174 (66.3 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 36/105 (34%), Positives = 63/105 (60%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
+ALI+ PTRELA Q+ + + + + V +GG + + R+L++ VVVGTPGR+
Sbjct: 100 QALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRV 159
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+++++ + ++ + FVLDEAD M+ G ++Q + MLP
Sbjct: 160 YDMIN---RKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLP 201
Score = 135 (52.6 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQG 213
+GP E E V E+ +D ++++ L L++ IY F++P+ IQ +A IP +G
Sbjct: 10 DGPASMEPEGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCV--RG 67
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRL-LEEREKAAKMLEDKGEEA 256
+DVI A++G+GKT F + I+Q++ RE A +L E A
Sbjct: 68 RDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELA 111
Score = 59 (25.8 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 439 RAGMRANVAIVDLTNMCVLANKLEESFIECKEED-KDAYLYYILSVHGQGRTIVFCTSIA 497
R MR V+I+ L +++ ++ K+E+ K L + ++++FC +
Sbjct: 222 RCFMRDPVSILVKKEELTLEG-IKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRR 280
Query: 498 ALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
+ ++ + I V +H M+QR R + Q
Sbjct: 281 KVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQ 314
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 283 (104.7 bits), Expect = 4.9e-22, Sum P(2) = 4.9e-22
Identities = 69/194 (35%), Positives = 108/194 (55%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W + L + + + Q+++PT IQ IPA + G+D+IG A TGSGKTLAF LP+
Sbjct: 510 SWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMN-GRDLIGIARTGSGKTLAFLLPMF 568
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ +L + K AP + ALI++PTRELALQ+ K +K + +R
Sbjct: 569 RHILAQ---------------PKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRT 613
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
+ GG S +Q LK ++VV TPGR+ +++ + + L ++F VLDEADRM +
Sbjct: 614 ACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFD 673
Query: 356 NGHFRELQSIIDML 369
G ++ I+D +
Sbjct: 674 MGFGPQINCIVDSI 687
Score = 50 (22.7 bits), Expect = 4.9e-22, Sum P(2) = 4.9e-22
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 385 NCVTVSSLQRKKRQTLVFSAT 405
NC+ V S+ R RQT++FSAT
Sbjct: 681 NCI-VDSI-RPDRQTIMFSAT 699
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 255 (94.8 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 72/223 (32%), Positives = 118/223 (52%)
Query: 159 DAEEELVNEAE---ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKD 215
DAE ++ ++ + + T ++E L + K++ + + TPIQ+ +P HQG D
Sbjct: 534 DAEVKITSDKKPVGVKT-CKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLI-HQGHD 591
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275
++ A+TGSGKT AF LPIM RL++E + L GE Y P R +I+TPTRE
Sbjct: 592 IMACAQTGSGKTAAFLLPIMARLIDEND-----LNTAGEGG-CY-P----RCIILTPTRE 640
Query: 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335
L Q+ + + A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 641 LTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT-- 698
Query: 336 LVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNK 377
++L FFVLDEADRMI+ G ++ +I++ M N+
Sbjct: 699 -IKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENR 740
Score = 79 (32.9 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 39/148 (26%), Positives = 64/148 (43%)
Query: 387 VTVSSLQRKK-RQTLVFSATIALSAD--FRKKLKHGSLKSKQSVNGLNSIETLSERAGMR 443
V S+ +K+ RQTL+FSAT S R LK G + + +I+ +
Sbjct: 729 VNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYI--------MLAIDKIGA----- 775
Query: 444 ANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHIS 503
AN ++ C + K ++ +E D D+Y S +TIVF + A ++
Sbjct: 776 ANKCVLQEFEKCDRSEK-KDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLA 834
Query: 504 SLLKILGIDVWTLHAQMQQRARLKLFSQ 531
S+L + T+H +QR R + Q
Sbjct: 835 SILSSAQVPAITIHGAREQRERSEALRQ 862
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 255 (94.8 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 72/223 (32%), Positives = 118/223 (52%)
Query: 159 DAEEELVNEAE---ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKD 215
DAE ++ ++ + + T ++E L + K++ + + TPIQ+ +P HQG D
Sbjct: 534 DAEVKITSDKKPVGVKT-CKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLI-HQGHD 591
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275
++ A+TGSGKT AF LPIM RL++E + L GE Y P R +I+TPTRE
Sbjct: 592 IMACAQTGSGKTAAFLLPIMARLIDEND-----LNTAGEGG-CY-P----RCIILTPTRE 640
Query: 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335
L Q+ + + A + + P+ GG++ + ++ ++VGT GR+ G
Sbjct: 641 LTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGT-- 698
Query: 336 LVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNK 377
++L FFVLDEADRMI+ G ++ +I++ M N+
Sbjct: 699 -IKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENR 740
Score = 79 (32.9 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 39/148 (26%), Positives = 64/148 (43%)
Query: 387 VTVSSLQRKK-RQTLVFSATIALSAD--FRKKLKHGSLKSKQSVNGLNSIETLSERAGMR 443
V S+ +K+ RQTL+FSAT S R LK G + + +I+ +
Sbjct: 729 VNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYI--------MLAIDKIGA----- 775
Query: 444 ANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHIS 503
AN ++ C + K ++ +E D D+Y S +TIVF + A ++
Sbjct: 776 ANKCVLQEFEKCDRSEK-KDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLA 834
Query: 504 SLLKILGIDVWTLHAQMQQRARLKLFSQ 531
S+L + T+H +QR R + Q
Sbjct: 835 SILSSAQVPAITIHGAREQRERSEALRQ 862
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 234 (87.4 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 74/216 (34%), Positives = 108/216 (50%)
Query: 176 AWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
+W L LHP ++ + L F TP+Q A IP + KDV A TGSGKTLAF +P
Sbjct: 8 SWESLPVPLHPKVLSVLRELGFPYMTPVQSATIPLFM-KNKDVAAEAVTGSGKTLAFVIP 66
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-N 292
I + LL RE EK+ K + A+IITPTRELA+Q+ + L K
Sbjct: 67 IEEILLR-RE-------------EKFK-KSQVGAIIITPTRELAVQIEEVLSHFTKPFPQ 111
Query: 293 VRVVPIVGGMST-EKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE---LHTLSFFVLD 348
+ +GG + E R + ++V TPGRL ++ + L + +L VLD
Sbjct: 112 FSQILWIGGRNPGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLD 171
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
EADR+++ G + +I++ LP + + QTQ
Sbjct: 172 EADRLLDMGFETSINTILEFLPKQRRTGLFSATQTQ 207
Score = 95 (38.5 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 35/138 (25%), Positives = 64/138 (46%)
Query: 402 FSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAI------VDLTNMC 455
F +I +F K + L S +E L RAG+R V I V ++
Sbjct: 181 FETSINTILEFLPKQRRTGLFSATQTQ---EVENLV-RAGLRNPVRISVKEKGVAASSTQ 236
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKIL--GIDV 513
++LE ++ CK ++K L + L H Q + +VF ++ A + + L+ L G+ +
Sbjct: 237 KTPSRLENHYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKI 296
Query: 514 WTLHAQMQQRARLKLFSQ 531
+H +M+ + R K+F +
Sbjct: 297 MCIHGKMKYK-RNKIFME 313
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 254 (94.5 bits), Expect = 5.5e-22, Sum P(3) = 5.5e-22
Identities = 67/190 (35%), Positives = 109/190 (57%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ E +L L +I R + +PTP+QK +P + G+D++ A+TGSGKT AF LPI+Q
Sbjct: 183 FEEAKLCESLENNISRSGYVKPTPVQKYGLPIIS-AGRDLMACAQTGSGKTAAFLLPILQ 241
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+L+ + A++ E +E E A+I+ PTREL Q+ + + G VR V
Sbjct: 242 QLMADGVAASRFSEI--QEPE---------AVIVAPTRELINQIYQEARKFSFGTCVRPV 290
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG++T Q R ++ V+ GTPGRL +++ G+ V L + VLDEADRM++
Sbjct: 291 VVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGK---VGLSKVRHLVLDEADRMLDM 347
Query: 357 GHFRELQSII 366
G +++ ++
Sbjct: 348 GFEPDMRRLV 357
Score = 61 (26.5 bits), Expect = 5.5e-22, Sum P(3) = 5.5e-22
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+E++F++ + +K L +L G RT+VF + I++ L + ++H
Sbjct: 408 VEQTFLQVTKFNKREQLLDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDR 467
Query: 521 QQRARLK 527
+QR R K
Sbjct: 468 EQREREK 474
Score = 49 (22.3 bits), Expect = 5.5e-22, Sum P(3) = 5.5e-22
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 394 RKKRQTLVFSATIA-----LSADFRK 414
+++RQTL+FSAT L+ADF K
Sbjct: 365 KEERQTLMFSATFPEDIQRLAADFLK 390
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 156 (60.0 bits), Expect = 6.4e-22, Sum P(4) = 6.4e-22
Identities = 37/106 (34%), Positives = 60/106 (56%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
+RAL+++PTRELALQ +K + + +R +VGG E+Q + P++++ TPGR
Sbjct: 94 IRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGR 153
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
L ++ E L L + + V DEADR+ E G +L + +P
Sbjct: 154 LLHVIV--EMDL-RLSYVQYVVFDEADRLFEMGFQDQLTETLKRIP 196
Score = 145 (56.1 bits), Expect = 6.4e-22, Sum P(4) = 6.4e-22
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 154 SNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG 213
S+ +D + +N+ + W ++ L + K+I + F +PTPIQ+ IP G
Sbjct: 3 SDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIM-DG 61
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRL 238
KDV+ + TGSGKT AF +P++Q+L
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPMLQKL 86
Score = 74 (31.1 bits), Expect = 6.4e-22, Sum P(4) = 6.4e-22
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 457 LANKLEESFIECKEEDK-DAYLYYILSVHGQGR-TIVFCTSIAALRHISSLLKILGIDVW 514
+++KL F C+ ++K A L+ + + + T+VFC ++ + ++ +L GID
Sbjct: 234 VSDKLSMVFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCS 293
Query: 515 TLHAQMQQRAR 525
+++Q+ AR
Sbjct: 294 FVYSQLDATAR 304
Score = 48 (22.0 bits), Expect = 6.4e-22, Sum P(4) = 6.4e-22
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 395 KKRQTLVFSATIA-LSADFRK 414
+ RQTL+FSAT+ + DF K
Sbjct: 197 ESRQTLLFSATLPKMLVDFAK 217
Score = 40 (19.1 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 392 LQRKKRQTLVFSATI 406
+ R+ +QT+VF AT+
Sbjct: 261 MDRENKQTVVFCATM 275
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 272 (100.8 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 70/194 (36%), Positives = 103/194 (53%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ L L ++ S+ + + PTPIQ+ IP QG+D++G A+TG+GKTLAF PI+
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVI-QGRDIVGLAQTGTGKTLAFAAPILD 67
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
RL R + AP R L++ PTRELA Q+ G+N+RVV
Sbjct: 68 RL--SRNASP-------------APVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVV 112
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG Q R L+ ++V TPGRL +LM E+ V L + +LDEAD+M++
Sbjct: 113 MVCGGAKIGGQIRQLERGAHILVATPGRLIDLM---EQRAVSLDKVETLILDEADQMLDL 169
Query: 357 GHFRELQSIIDMLP 370
G L++I +P
Sbjct: 170 GFIHALRAIAKNVP 183
Score = 43 (20.2 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 396 KRQTLVFSATI 406
KRQTL FSAT+
Sbjct: 185 KRQTLFFSATM 195
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 271 (100.5 bits), Expect = 9.0e-22, Sum P(3) = 9.0e-22
Identities = 64/210 (30%), Positives = 118/210 (56%)
Query: 171 STEFDAWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
+TE AW LR LHP + ++I + + TP+Q + IP + KDV+ A TGSGKTL
Sbjct: 4 NTESLAWENLRYDLHPWIKEAISSMGYPTMTPVQASTIPLLSGN-KDVVVEAVTGSGKTL 62
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
+F +P++Q++ + K + G+ E +GH+ +++++PTRELA Q+ V
Sbjct: 63 SFVIPVLQKISDRLYKP----DSDGDLPEP-VKRGHMLSIVLSPTRELANQIQSVFNQVL 117
Query: 289 ------KGINVRVVPIVGGMSTEKQE--RLLKARPEVVVGTPGRLWELMSGGEKHLVELH 340
KG + +VG + +++ + L +P++++GTPGR+ E + G ++
Sbjct: 118 QYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFL--GSSQSIKTS 175
Query: 341 TLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+L +LDEAD++++ +++ +I+ LP
Sbjct: 176 SLEIVILDEADKLLDFSFEKDVINILKKLP 205
Score = 50 (22.7 bits), Expect = 9.0e-22, Sum P(3) = 9.0e-22
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLL-KILG-------ID 512
L+ S++ E K L ILS + + IV+ + +++H + K+ +
Sbjct: 253 LQLSYMMINPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLK 312
Query: 513 VWTLHAQMQQRARLK 527
++LH Q+ ++RLK
Sbjct: 313 FFSLHGQLNTKSRLK 327
Score = 38 (18.4 bits), Expect = 9.0e-22, Sum P(3) = 9.0e-22
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 395 KKRQTLVFSATIA 407
K+R+T +FSATI+
Sbjct: 206 KQRRTGLFSATIS 218
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 236 (88.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 72/216 (33%), Positives = 106/216 (49%)
Query: 176 AWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
+W L LHP ++ + L F TP+Q A IP + KDV A TGSGKTLAF +P
Sbjct: 8 SWESLPVPLHPRVLDVLQELGFPYMTPVQSATIPLFM-KNKDVAAEAVTGSGKTLAFVIP 66
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-N 292
I++ LL EK K + A+IITPTRELA+Q+ + L K
Sbjct: 67 ILEILLRREEKLKK---------------SQVGAIIITPTRELAVQIDEVLSHFTKPFPQ 111
Query: 293 VRVVPIVGGMST-EKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE---LHTLSFFVLD 348
+ +GG + E R + ++V TPGRL ++ + L + +L VLD
Sbjct: 112 FSQILWIGGRNPGEDVARFKEHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLD 171
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQ 384
EADR+++ G + +I++ LP + + QTQ
Sbjct: 172 EADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQ 207
Score = 88 (36.0 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 34/138 (24%), Positives = 63/138 (45%)
Query: 402 FSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAI------VDLTNMC 455
F A+I +F K + L S +E L RAG+R V I ++
Sbjct: 181 FEASINTILEFLPKQRRTGLFSATQTQ---EVENLV-RAGLRNPVRISVKEKGAAASSTQ 236
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKIL--GIDV 513
++LE ++ CK ++K L + L H Q + +VF ++ A + + L+ L + +
Sbjct: 237 KTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVRSVKI 296
Query: 514 WTLHAQMQQRARLKLFSQ 531
+H +M+ + R K+F +
Sbjct: 297 MCIHGKMKYK-RNKIFME 313
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 185 (70.2 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 39/105 (37%), Positives = 64/105 (60%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
+AL++TPTRELA+QV + + + + ++ I G +Q+ LK + +VVGTPGR+
Sbjct: 74 QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRV 133
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ + EK + L L + V+DEAD M+ G ++++IID LP
Sbjct: 134 LDHI---EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175
Score = 105 (42.0 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 188 KSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL-LEEREKAA 246
+++ L ++ PT +Q IP A Q KD++ ++TGSGKT +FG+P+ + + EE + A
Sbjct: 17 RALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQA 75
Query: 247 KMLEDKGEEA 256
+L E A
Sbjct: 76 LVLTPTRELA 85
Score = 74 (31.1 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 23/93 (24%), Positives = 42/93 (45%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
+E LS R M A I ++ + +K+E + E +EE+K + L + ++ I+F
Sbjct: 191 VERLS-RTYMNAPTHI-EIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIF 248
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
C + + H+ L + +H M Q R
Sbjct: 249 CRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDR 281
Score = 45 (20.9 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 23/101 (22%), Positives = 44/101 (43%)
Query: 396 KRQTLVFSATIA-----LSADFRKKLKHGSLKSKQSVNGLNSIE-TL-----SERAGMRA 444
KR T++FSAT+ LS + H +K+ + IE TL E+ +
Sbjct: 177 KRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITT--DKIEHTLFEVREEEKLSLLK 234
Query: 445 NVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG 485
+V ++ + C++ + +E+ ++ D Y +HG
Sbjct: 235 DVTTIENPDSCIIFCRTQEN-VDHVYRQLDRVNYPCDKIHG 274
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 185 (70.2 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 39/105 (37%), Positives = 64/105 (60%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
+AL++TPTRELA+QV + + + + ++ I G +Q+ LK + +VVGTPGR+
Sbjct: 74 QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRV 133
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ + EK + L L + V+DEAD M+ G ++++IID LP
Sbjct: 134 LDHI---EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175
Score = 105 (42.0 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 188 KSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL-LEEREKAA 246
+++ L ++ PT +Q IP A Q KD++ ++TGSGKT +FG+P+ + + EE + A
Sbjct: 17 RALTGLGYEHPTEVQGEVIPVAL-QKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQA 75
Query: 247 KMLEDKGEEA 256
+L E A
Sbjct: 76 LVLTPTRELA 85
Score = 74 (31.1 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 23/93 (24%), Positives = 42/93 (45%)
Query: 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492
+E LS R M A I ++ + +K+E + E +EE+K + L + ++ I+F
Sbjct: 191 VERLS-RTYMNAPTHI-EIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIF 248
Query: 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
C + + H+ L + +H M Q R
Sbjct: 249 CRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDR 281
Score = 45 (20.9 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 23/101 (22%), Positives = 44/101 (43%)
Query: 396 KRQTLVFSATIA-----LSADFRKKLKHGSLKSKQSVNGLNSIE-TL-----SERAGMRA 444
KR T++FSAT+ LS + H +K+ + IE TL E+ +
Sbjct: 177 KRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITT--DKIEHTLFEVREEEKLSLLK 234
Query: 445 NVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG 485
+V ++ + C++ + +E+ ++ D Y +HG
Sbjct: 235 DVTTIENPDSCIIFCRTQEN-VDHVYRQLDRVNYPCDKIHG 274
>UNIPROTKB|F6S4E6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00641634 SMR:F6S4E6 Ensembl:ENST00000415027
Ensembl:ENST00000432189 Ensembl:ENST00000444267
Ensembl:ENST00000444480 Ensembl:ENST00000451051
Ensembl:ENST00000452908 Ensembl:ENST00000456662 Uniprot:F6S4E6
Length = 231
Score = 169 (64.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
A G DV+ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 183 (69.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 41/104 (39%), Positives = 64/104 (61%)
Query: 268 LIITPTRELALQVTDHLKGVAKGIN-VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
L++ PTRELA+QV + + +K + V VV + GG + Q R L+ P++VVGTPGRL
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ + G ++L LS VLDEAD M+ G ++++I+ +P
Sbjct: 138 DHLKRGT---LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Score = 146 (56.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 168 AEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKT 227
AE T F +L L +++++ L +++P+PIQ CIP + G+DV+G A+TGSGKT
Sbjct: 2 AEFETTFA---DLGLKAPILEALNDLGYEKPSPIQAECIPHLLN-GRDVLGMAQTGSGKT 57
Query: 228 LAFGLPIMQRLLEEREKAAKML 249
AF LP++Q L E KA ++L
Sbjct: 58 AAFSLPLLQNLDPEL-KAPQIL 78
>POMBASE|SPCC1494.06c [details] [associations]
symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
Length = 595
Score = 245 (91.3 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 68/226 (30%), Positives = 124/226 (54%)
Query: 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTL 228
E S+E +++ L P L ++I++ +F++PT +Q IP A +GKD++ A TGSGKT
Sbjct: 9 EESSE-KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL-EGKDLVAQARTGSGKTA 66
Query: 229 AFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288
A+ +PI++ LL++++ D+ + +G + AL++ PTRELA QV + L+ +
Sbjct: 67 AYLIPILELLLKQKQI------DENQ-------RG-IFALLLVPTRELAQQVYNVLEKLT 112
Query: 289 K--GINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346
++R + + S Q LL P++V+ TP R ++ G ++ L L F V
Sbjct: 113 AFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASG---VLPLDKLKFLV 169
Query: 347 LDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSL 392
+DEAD M+ G+ +++++ LP S + ++N ++ L
Sbjct: 170 IDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKL 215
Score = 77 (32.2 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHG-QGRTIVFCTSIAALRHISSLLKILGIDVWTL 516
+ KL + ++C E+DK Y +L + +G+ ++F I + L+ G+ L
Sbjct: 231 SGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVL 290
Query: 517 HAQMQQRARLKLFSQ 531
++++ +RL + Q
Sbjct: 291 NSELPVNSRLHILEQ 305
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 262 (97.3 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 66/214 (30%), Positives = 117/214 (54%)
Query: 159 DAEEELVNEA---EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKD 215
D EE+ EA ++ +++L LH + ++I + PTP+QK IPA G+D
Sbjct: 212 DKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPAL-QGGRD 270
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAA-KMLEDKGEEAEKYAPKGHLRALIITPTR 274
++ A+TGSGKT AF +P++ +L++ A + + G ++Y P AL+++PTR
Sbjct: 271 LMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQY-PS----ALVLSPTR 325
Query: 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQE-RLLKARPEVVVGTPGRLWELMSGGE 333
EL+LQ+ + + A + + GG K + L+ +++ TPGRL ++M G
Sbjct: 326 ELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQG- 384
Query: 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIID 367
L+ + + VLDEADRM++ G +++ I++
Sbjct: 385 --LIGMEGCRYLVLDEADRMLDMGFEPQIRQIVE 416
Score = 60 (26.2 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 17/87 (19%), Positives = 39/87 (44%)
Query: 442 MRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGR-TIVFCTSIAALR 500
++ N + + + + + + + +E++K +YL +L G T+VF +
Sbjct: 447 LKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGAS 506
Query: 501 HISSLLKILGIDVWTLHAQMQQRARLK 527
++ L +V T+H ++Q R K
Sbjct: 507 DLAYYLNRQNYEVVTIHGDLKQFEREK 533
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 175 (66.7 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 55/223 (24%), Positives = 105/223 (47%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R+L++ PTRELA QV ++ K + + ++GG+S ++Q+ L+ +V++ TPGRL
Sbjct: 75 RSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRL 134
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS---NKGQSEQ 382
+ G+ L + + V+DEADRM++ G +++ I + P T + + + +
Sbjct: 135 LDHFERGKLLLTGVQIM---VVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSATMAPE 191
Query: 383 TQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGM 442
+ +T + L R + AT + + + L GS + +++ + L + G
Sbjct: 192 IER-ITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALIDAEGE 250
Query: 443 RANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG 485
+ TN + N+ + I K K Y Y +HG
Sbjct: 251 KC-------TNAIIFCNRKTDVDIVAKSLQK--YGYDAAPIHG 284
Score = 149 (57.5 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
++EL L+P ++K+I ++ PTPIQ IP A +G+DV+G A+TG+GKT +F LP++
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPAL-EGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 237 RLLEEREKA 245
L R +A
Sbjct: 63 LLARGRARA 71
Score = 52 (23.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 472 DKDAYLYYILSVHGQGRT--IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
+K A L ++ G+ T I+FC + ++ L+ G D +H + Q R +
Sbjct: 236 EKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTR 293
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 272 (100.8 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 64/167 (38%), Positives = 104/167 (62%)
Query: 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254
F++P+PIQ P G+D+IG A+TGSGKTLAFG+P + +L++ +K G
Sbjct: 134 FEKPSPIQSHTWPFLL-DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKI-------GG 185
Query: 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKAR 314
++K P L+++PTRELA+Q++D L+ + ++ + + GG S Q +++
Sbjct: 186 GSKKVNPT----CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSG 241
Query: 315 PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 361
++V+GTPGRL +L+ E +++ L +SF VLDEADRM++ G F E
Sbjct: 242 VDIVIGTPGRLRDLI---ESNVLRLSDVSFVVLDEADRMLDMG-FEE 284
Score = 42 (19.8 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 26/110 (23%), Positives = 49/110 (44%)
Query: 389 VSSLQRKKRQTLVFSATIALSA-----DFRK----KLKHGSLKSKQSVNGLNSIETLSER 439
+ S K RQ ++FSAT L +F K+ GS+ + + + IE L ER
Sbjct: 289 ILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDER 348
Query: 440 AGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYL----YYILSVHG 485
A + +A+++ + L + + + E + +L + +S+HG
Sbjct: 349 ARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHG 398
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 275 (101.9 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+W++ L + I L +++PT IQ IPA G+DVIG A+TGSGKT+AF LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAIT-SGRDVIGVAKTGSGKTIAFLLPMF 477
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
+ + ++R GE G + A+I+TPTRELA+Q+ K K +N+R
Sbjct: 478 RHIKDQRPLKT------GE--------GPI-AIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
GG + Q LK E+VV TPGR+ +++S + LH ++ VLDEADRM +
Sbjct: 523 CCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFD 582
Query: 356 NGHFRELQSIID 367
G ++ II+
Sbjct: 583 LGFEPQVMRIIN 594
Score = 49 (22.3 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 394 RKKRQTLVFSATI--ALSADFRKKLK 417
R RQT++FSAT A+ A RK LK
Sbjct: 597 RPDRQTVLFSATFPRAMEALARKVLK 622
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 193 (73.0 bits), Expect = 4.8e-21, Sum P(3) = 4.8e-21
Identities = 37/107 (34%), Positives = 66/107 (61%)
Query: 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPG 323
H++AL++ PTRELA Q+ + + + +NV ++P +GG S +R L+A VVVGTPG
Sbjct: 97 HVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPG 156
Query: 324 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
R+ ++++ ++ ++ + FVLDEAD M+ G ++ + +P
Sbjct: 157 RVGDMIN---RNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP 200
Score = 123 (48.4 bits), Expect = 4.8e-21, Sum P(3) = 4.8e-21
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQK-ACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
++++++ L L++ IY F++P+ IQK A +P GKDVI A++G+GKT F +
Sbjct: 29 ESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTT--GKDVIAQAQSGTGKTATFSVS 86
Query: 234 IMQRLLEE 241
I+QR+ E
Sbjct: 87 ILQRIDHE 94
Score = 37 (18.1 bits), Expect = 4.8e-21, Sum P(3) = 4.8e-21
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 469 KEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
K+E K L + +V + ++FC + + ++ + V LH M Q R
Sbjct: 251 KDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAER 307
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 284 (105.0 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 69/191 (36%), Positives = 110/191 (57%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W + + M+ + RL F++PTPIQ IPA G+D+IG A+TGSGKTLAF LP+ +
Sbjct: 512 WAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIM-SGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+L++ +ED G+ A A+I+ PTREL +Q+ ++ +K + +R V
Sbjct: 571 HILDQPS-----MED-GDGAI---------AIIMAPTRELCMQIGKDIRKFSKSLGLRPV 615
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG +Q LK E++V TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 616 CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDM 675
Query: 357 GHFRELQSIID 367
G ++ IID
Sbjct: 676 GFEPQVMRIID 686
Score = 40 (19.1 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 394 RKKRQTLVFSATIA--LSADFRKKLK 417
R RQT++FSAT + A R+ LK
Sbjct: 689 RPDRQTVMFSATFPRQMEALARRILK 714
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 183 (69.5 bits), Expect = 5.2e-21, Sum P(3) = 5.2e-21
Identities = 47/127 (37%), Positives = 68/127 (53%)
Query: 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMS 303
K A L E + ++ + RALI++PTRELALQ K + K ++ I+GG
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
E Q L P++++ TPGRL + E L +L ++ + V DEADR+ E G +LQ
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAV--EMSL-KLQSVEYVVFDEADRLFEMGFAEQLQ 262
Query: 364 SIIDMLP 370
II LP
Sbjct: 263 EIIARLP 269
Score = 123 (48.4 bits), Expect = 5.2e-21, Sum P(3) = 5.2e-21
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
+ K I + +K PTPIQ+ IP GKDV+ A TGSGKT F LP+ +RL
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIPVIL-DGKDVVAMARTGSGKTACFLLPMFERL 158
Score = 66 (28.3 bits), Expect = 5.2e-21, Sum P(3) = 5.2e-21
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 439 RAGMRANVAI-VDLTNMCVLANKLEESFIECKEEDKDAYLYYILS--VHGQGRTIVFCTS 495
RAG+ V I +D+ L +L+ SF +E+ K A L ++L V Q +T+VF +
Sbjct: 290 RAGLTEPVLIRLDVDTK--LNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVAT 347
Query: 496 IAALRHISSLLKILGIDVWTLHAQMQQRAR 525
+++ LL + +++ + AR
Sbjct: 348 KHHAEYLTELLTTQRVSCAHIYSALDPTAR 377
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 250 (93.1 bits), Expect = 6.8e-21, Sum P(3) = 6.8e-21
Identities = 68/190 (35%), Positives = 106/190 (55%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ E L L K++ + + +PTP+QK IP + G+D++ A+TGSGKT AF LPI+Q
Sbjct: 279 FEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIIS-AGRDLMACAQTGSGKTAAFLLPILQ 337
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
R + + A+K E +E E A+I+ PTREL Q+ + A G VR V
Sbjct: 338 RFMTDGVAASKFSEI--QEPE---------AIIVAPTRELINQIYLEARKFAYGTCVRPV 386
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG++T R + V+ TPGRL +L+ G+ + L + + VLDEADRM++
Sbjct: 387 VVYGGINTGYTIREVLKGCNVLCATPGRLHDLIGRGK---IGLSKVRYLVLDEADRMLDM 443
Query: 357 GHFRELQSII 366
G E++ ++
Sbjct: 444 GFEPEMRKLV 453
Score = 66 (28.3 bits), Expect = 6.8e-21, Sum P(3) = 6.8e-21
Identities = 30/126 (23%), Positives = 52/126 (41%)
Query: 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAG-MRANVAIVDLTNMCV-----LANKLEES 464
+ RK + + SK+ L T E M A+ VD + V + +E++
Sbjct: 448 EMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQT 507
Query: 465 FIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRA 524
++ + K L +L G RT+VF + + I++ L I ++H +QR
Sbjct: 508 VVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQRE 567
Query: 525 RLKLFS 530
R K S
Sbjct: 568 REKALS 573
Score = 46 (21.3 bits), Expect = 7.7e-19, Sum P(3) = 7.7e-19
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 394 RKKRQTLVFSATIA-----LSADFRK 414
+++RQTL+FSAT ++ADF K
Sbjct: 461 KEERQTLMFSATYPEDIQRMAADFLK 486
Score = 42 (19.8 bits), Expect = 6.8e-21, Sum P(3) = 6.8e-21
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 38 WNHSFSAEDNDPFAFLVGSNELDGGFLS 65
W S + F +GSN DGGF S
Sbjct: 4 WEEDQSPVVSCSSGFGLGSNGSDGGFKS 31
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 165 (63.1 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPG 323
++AL++ PTRELA QV L+ +A+ N++++ I GG+ Q L+ VV+GTPG
Sbjct: 73 VQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEHGAHVVIGTPG 132
Query: 324 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
RL + + G L L TL VLDEADRM++ G ++ ++I P
Sbjct: 133 RLLDHLRRGSLDLSALRTL---VLDEADRMLDMGFQDDISALIAAAP 176
Score = 128 (50.1 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A++ LRL +++++ L + E TPIQ +P GKDVI A+TGSGKT AFG+ ++
Sbjct: 5 AFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLIL-AGKDVIARAKTGSGKTAAFGIGLL 63
Query: 236 QRL 238
RL
Sbjct: 64 SRL 66
Score = 58 (25.5 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
Identities = 13/65 (20%), Positives = 28/65 (43%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+E+ F E + + IL + ++FC + + +++ L + G +H +
Sbjct: 217 IEQVFYEVDSGQRIEAVERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDL 276
Query: 521 QQRAR 525
QR R
Sbjct: 277 DQRER 281
Score = 44 (20.5 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 396 KRQTLVFSAT 405
KRQTL+FSAT
Sbjct: 178 KRQTLLFSAT 187
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 168 (64.2 bits), Expect = 7.6e-21, Sum P(4) = 7.6e-21
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
+ALI+ PTRELALQV + AK + V VV + GG Q + ++ ++VV TPGR
Sbjct: 76 QALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGR 135
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372
L + + EK L T++ VLDEAD M++ G +L+ I +P T
Sbjct: 136 LCDHLRRDEKVLA---TVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Score = 140 (54.3 bits), Expect = 7.6e-21, Sum P(4) = 7.6e-21
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229
++ E + L LHP ++ ++ ++EP+ IQ+ IP G D+IG A+TG+GKT A
Sbjct: 1 MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIIL-AGHDMIGQAQTGTGKTAA 59
Query: 230 FGLPIMQRL-LEEREKAAKMLEDKGEEAEKYA 260
F LPI+ R+ +RE A +L E A + A
Sbjct: 60 FALPILHRIDPSKREPQALILAPTRELALQVA 91
Score = 50 (22.7 bits), Expect = 7.6e-21, Sum P(4) = 7.6e-21
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 397 RQTLVFSATI-----ALSADFRKKLKHGSLKSK-QSVNGLNSIETL 436
RQT++FSAT+ A++ K KH ++SK Q+V + L
Sbjct: 181 RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLL 226
Score = 42 (19.8 bits), Expect = 7.6e-21, Sum P(4) = 7.6e-21
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+E++ + + K + + +L V I+F + A ++S L+ G L+ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 521 QQRARLKLFSQM 532
Q R ++ +
Sbjct: 280 AQNQRERVIDSL 291
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 268 LIITPTRELALQVTDHLKGVAKGINVRV 295
L++TP LQV + + G K VR+
Sbjct: 347 LLVTPRERRMLQVIERVTG-QKVAEVRL 373
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 263 (97.6 bits), Expect = 7.9e-21, Sum P(3) = 7.9e-21
Identities = 66/196 (33%), Positives = 105/196 (53%)
Query: 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEE 241
L LLM++I F +PTP+QK IP +G+D++ A+TGSGKT F P+ L
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVT-KGRDLMACAQTGSGKTGGFLFPLFTELFRS 219
Query: 242 REKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGG 301
+ +K + Y+ KG+ AL++ PTRELA Q+ + + VR + GG
Sbjct: 220 ---GPSPVPEKAQSF--YSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGG 274
Query: 302 MSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 361
Q R + +++V TPGRL +L+ G+ V L + + VLDEADRM++ G +
Sbjct: 275 APIGNQMREVDRGCDLLVATPGRLNDLLERGK---VSLANIKYLVLDEADRMLDMGFEPQ 331
Query: 362 LQSIIDMLPMTNGSNK 377
++ I++ M + N+
Sbjct: 332 IRHIVEECDMPSVENR 347
Score = 48 (22.0 bits), Expect = 7.9e-21, Sum P(3) = 7.9e-21
Identities = 13/73 (17%), Positives = 29/73 (39%)
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
+ + + + + DK + L +LS +G T++F + ++ L + +H
Sbjct: 383 SENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIH 442
Query: 518 AQMQQRARLKLFS 530
Q R + S
Sbjct: 443 GDRTQAERERALS 455
Score = 40 (19.1 bits), Expect = 7.9e-21, Sum P(3) = 7.9e-21
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 395 KKRQTLVFSAT 405
+ RQTL+FSAT
Sbjct: 345 ENRQTLMFSAT 355
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 175 (66.7 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 42/106 (39%), Positives = 66/106 (62%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
+AL+I PTRELA QV ++ +A+ N++V+ + GG+S Q L+ ++VGTPGR
Sbjct: 76 QALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPGR 135
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ + + G L L+TL VLDEADRM++ G + ++ II+ P
Sbjct: 136 IQQHLRKGSLVLDGLNTL---VLDEADRMLDMGFYDAIEDIIEKTP 178
Score = 115 (45.5 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229
++T A+N L L P ++ ++ L + + TPIQ +P +G D+I A+TGSGKT A
Sbjct: 1 MTTIATAFNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVIL-KGMDLIAQAKTGSGKTAA 59
Query: 230 FGLPIM 235
FG+ ++
Sbjct: 60 FGIGLL 65
Score = 59 (25.8 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 460 KLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQ 519
++E+ F E E++ + + +L + FC + ++ L GI LH
Sbjct: 218 QIEQRFYEISPEERMSAVTKVLHHFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGD 277
Query: 520 MQQRAR---LKLFSQMIT 534
++QR R L +F+ T
Sbjct: 278 LEQRDRDQVLAMFANRST 295
Score = 43 (20.2 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 396 KRQTLVFSATIALSADFRKKLKHGSLKSKQSV 427
+RQTL+FSAT + K+L ++ Q+V
Sbjct: 180 RRQTLLFSATYPVGI---KQLASKFMRDPQTV 208
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 276 (102.2 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 66/200 (33%), Positives = 117/200 (58%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
D +++L + ++M +I ++ PTP+QK IP + +D++ A+TGSGKT AF LP+
Sbjct: 208 DRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSK-RDLMACAQTGSGKTAAFLLPV 266
Query: 235 MQRLLEERE-KAAKMLEDKGEEAEKYAP-KGHLRALIITPTRELALQVTDHLKGVAKGIN 292
+ ++ + +A + ++ +E KY K + +L++ PTRELALQ+ D + + +
Sbjct: 267 LSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSH 326
Query: 293 VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352
VR + GG +Q R L+ ++V TPGRL ++M G+ + L ++ VLDEADR
Sbjct: 327 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGK---IGLDYCNYLVLDEADR 383
Query: 353 MIENGHFRELQSII--DMLP 370
M++ G +++ I+ D +P
Sbjct: 384 MLDMGFEPQIRRIVEQDTMP 403
Score = 38 (18.4 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 378 GQSEQTQNCVTVSSLQRKK-RQTLVFSAT 405
G Q + V ++ K RQT++FSAT
Sbjct: 388 GFEPQIRRIVEQDTMPPKGLRQTMMFSAT 416
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 143 (55.4 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKG---INVRVVPIVGGMSTEKQERLLKARPEVV 318
K ++ +I PTRELA Q+ + +G +R +GG +K LK +P +V
Sbjct: 70 KDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLV 129
Query: 319 VGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
VGTPGR+ +L+ ++ + +H V+DEAD M++ G ++ I +P
Sbjct: 130 VGTPGRIADLI---KEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMP 178
Score = 129 (50.5 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 28/67 (41%), Positives = 47/67 (70%)
Query: 172 TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFG 231
T+F+ + EL+ P ++ +++RL F EPT IQK IPA + + VIG ++TG+GKT A+
Sbjct: 4 TKFELY-ELK--PFIIDAVHRLGFYEPTDIQKRLIPAVLKK-ESVIGQSQTGTGKTHAYL 59
Query: 232 LPIMQRL 238
LP++ ++
Sbjct: 60 LPLLNKI 66
Score = 88 (36.0 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 456 VLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
V A K+E I K DKD L+ I+S IVF + HI+ L G+ +
Sbjct: 215 VTAAKIEHILIPSKHRDKDKLLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGL 274
Query: 516 LHAQMQQRARLKLFSQM 532
LH + R R K+ Q+
Sbjct: 275 LHGGLTPRERKKVMKQI 291
Score = 41 (19.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK 312
++ T+ A + +L G KG+ + ++ GG++ ++++++K
Sbjct: 249 IVFANTKNTADHIAQYLTG--KGMKIGLLH--GGLTPRERKKVMK 289
>UNIPROTKB|J3KS25 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000585024
Uniprot:J3KS25
Length = 188
Score = 145 (56.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQG 213
NGPD E E V E+ + D+++++ L L++ IY F++P+ IQ +A +P +G
Sbjct: 10 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 67
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRL-LEEREKAAKMLEDKGEEAEK 258
DVI A++G+GKT F + I+Q++ L+ + A +L E A++
Sbjct: 68 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ 113
Score = 130 (50.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGR 324
+AL++ PTRELA Q+ + + + +GG + + ++L P ++VGTPGR
Sbjct: 100 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 159
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMI 354
++++++ ++L + + FVLDEAD M+
Sbjct: 160 VFDMLN--RRYLSPKY-IKMFVLDEADEML 186
>UNIPROTKB|F8VQ10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:NAENPAI EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI01025218 SMR:F8VQ10
Ensembl:ENST00000417556 Ensembl:ENST00000547039
Ensembl:ENST00000547489 Ensembl:ENST00000548340
Ensembl:ENST00000548614 Ensembl:ENST00000550217
Ensembl:ENST00000552288 Uniprot:F8VQ10
Length = 443
Score = 238 (88.8 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 75/226 (33%), Positives = 114/226 (50%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRA 267
A G DV+ A++G GKT F L +Q+L E L G + +
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL--EPVTGQVYL---GRVLGRGFWCVFVSV 131
Query: 268 LIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVGTPGRL 325
L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVGTPGR+
Sbjct: 132 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 191
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 192 LALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 234
Score = 71 (30.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 277 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 336
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 337 PQEERLSRYQQFKDFQRR 354
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 264 (98.0 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 66/180 (36%), Positives = 105/180 (58%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
L+K++ + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ ++++
Sbjct: 280 LIKAVRKAEYTQPTPIQAQAVPTAL-SGRDIIGIAKTGSGKTAAFIWPMLMHVMDQ---- 334
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
K L+ G+ P G LI+ PTREL+LQ+ + K K N+ VV GG S
Sbjct: 335 -KQLKP-GD-----GPIG----LILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKW 383
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E++V TPGR+ +++ + L ++F VLDEADRM G +++SI
Sbjct: 384 EQSKALEQGAEIIVATPGRMIDMV---KMKATNLRRVTFLVLDEADRMFHMGFEPQVRSI 440
Score = 53 (23.7 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 477 LYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
L +++ +G ++F T +S+ L I + LH M Q R K+ +Q
Sbjct: 505 LCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQ 559
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 230 (86.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 62/197 (31%), Positives = 109/197 (55%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
++E+ L L+K++ L + +PT IQ+ IP A +GKD++ A TGSGKT A+ +P++Q
Sbjct: 8 FHEMGLDDRLLKALADLGWSQPTLIQEKAIPLAL-EGKDLLARARTGSGKTAAYAVPLIQ 66
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK--GINVR 294
R+L ++ E+A +RA+++ PT+EL QV ++ + +VR
Sbjct: 67 RVLTSKQTVR-------EQA--------VRAVVLVPTKELGQQVQTMIRQLTAYCSRDVR 111
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHT-LSFFVLDEADRM 353
V I G Q+ +L +P++VV TP R+ ++ ++LH+ L V+DEAD +
Sbjct: 112 VADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQN---LQLHSSLEMLVIDEADLL 168
Query: 354 IENGHFRELQSIIDMLP 370
G +L++++ LP
Sbjct: 169 FSFGFEADLKNLLCHLP 185
Score = 85 (35.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 20/76 (26%), Positives = 43/76 (56%)
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHG--QGRTIVFCTSIAALRHISSLLKILGIDVWT 515
+++L++ I+C+EEDK +Y +L + G QG+T++F + + + L+ I
Sbjct: 225 SSQLQQFSIKCEEEDKFLLIYTMLKL-GLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACV 283
Query: 516 LHAQMQQRARLKLFSQ 531
L++++ +R + SQ
Sbjct: 284 LNSELPVHSRCHIISQ 299
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 237 (88.5 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 69/203 (33%), Positives = 106/203 (52%)
Query: 172 TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFG 231
T FD + L PL +K I FK T +Q+A +P QGKD++ A+TG+GKT+AF
Sbjct: 80 TRFD---QFPLSPLTLKGIEDAGFKTMTVVQEATLPLIL-QGKDILAKAKTGTGKTVAFL 135
Query: 232 LPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK-- 289
LP ++ ++ KA D ++ P + L++ PTRELA Q + K
Sbjct: 136 LPSIEAVI----KAPPASRDN-----RHPP---IIVLVVCPTRELACQAAAEANILLKYH 183
Query: 290 -GINVRVVPIVGGMSTEKQERLLKARP-EVVVGTPGRLWELMSGGEKHLVELHTLSFFVL 347
I V+VV +GG ++R L+ P +++V TPGRL + + L + VL
Sbjct: 184 PSIGVQVV--IGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVL 241
Query: 348 DEADRMIENGHFRELQSIIDMLP 370
DEAD +++ G RE++ II +P
Sbjct: 242 DEADHLLDMGFRREIERIIAAVP 264
Score = 65 (27.9 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 460 KLEESFIECKEEDKDAYLYYILSVH---GQG-RTIVFCTSIAALRHISSLLKILGIDVWT 515
K+ + ++ + + LY +L H G + I+FCT+ R ++ LL L ++V
Sbjct: 308 KVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVRE 367
Query: 516 LHAQMQQRARLKL 528
+H++ Q R ++
Sbjct: 368 IHSRKPQSYRTRV 380
Score = 49 (22.3 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 395 KKRQTLVFSATIALSADFRKKLKHGSLK 422
K+RQT +FSAT++ D +++ H +LK
Sbjct: 265 KQRQTFLFSATVS---DEVRQICHVALK 289
Score = 39 (18.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 450 DLTNMCVLANKLEESFIECKEE 471
++ +C +A K + F+ C +E
Sbjct: 279 EVRQICHVALKRDHEFVNCVQE 300
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 275 (101.9 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 68/216 (31%), Positives = 120/216 (55%)
Query: 159 DAEEELVNEA---EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKD 215
D E++ EA + ++++++L ++ ++ ++ +PTP+QK IP + G+D
Sbjct: 276 DKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIIN-GRD 334
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275
++ A+TGSGKT AF +PI+ ++ E + ++Y P G L++ PTRE
Sbjct: 335 LMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQY-PLG----LVLAPTRE 389
Query: 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335
LA Q+ + K A +R + GG +T +Q R L ++V TPGRL ++++ G+
Sbjct: 390 LATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGK-- 447
Query: 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371
V L + F VLDEADRM++ G +++ I++ L M
Sbjct: 448 -VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNM 482
Score = 40 (19.1 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 396 KRQTLVFSAT 405
+RQTL+FSAT
Sbjct: 487 QRQTLMFSAT 496
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 169 (64.5 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 40/120 (33%), Positives = 65/120 (54%)
Query: 257 EKYAPK-GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARP 315
EK PK ++ALI+ PTRELALQ + ++ + K + + GG + L
Sbjct: 106 EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 165
Query: 316 EVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS 375
++VGTPGR+ +L S + + +L S F++DEAD+M+ ++ I+ LP T+ S
Sbjct: 166 HILVGTPGRVLDLAS---RKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQS 222
Score = 120 (47.3 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 23/80 (28%), Positives = 48/80 (60%)
Query: 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229
++T+ + + + L L+ I+ F++P+PIQ+ IP A G+D++ A+ G+GKT A
Sbjct: 41 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAA 99
Query: 230 FGLPIMQRLLEEREKAAKML 249
F +P ++++ + K ++
Sbjct: 100 FVIPTLEKVKPKLNKIQALI 119
Score = 67 (28.6 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 464 SFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQR 523
+F+E E K L + S + I+FC S + ++ + LG + HA+M+Q+
Sbjct: 263 AFVE--ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQ 320
Query: 524 ARLKLFSQ 531
R K+F +
Sbjct: 321 ERNKVFHE 328
Score = 38 (18.4 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 398 QTLVFSATIALSA-DFRKKLKH 418
Q+L+FSAT L+ +F K H
Sbjct: 221 QSLLFSATFPLTVKEFMVKHLH 242
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 182 (69.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 39/109 (35%), Positives = 66/109 (60%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVG 320
P+G +R L++ PTRELA Q+ + + + + +R I GG++ ++Q R L++ +VVV
Sbjct: 67 PRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVA 126
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 369
PGRL + + G + + TL ++DEADRM + G ++QSI+ L
Sbjct: 127 CPGRLLDHIWRGTIDICGVETL---IIDEADRMFDMGFQPDIQSILKCL 172
Score = 137 (53.3 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
F+++N P +M + ++EPTPIQ IP +G DVIG A+TG+GKT A+ LP
Sbjct: 3 FESFN---FAPAVMAGVRACGYQEPTPIQAQAIPPIL-EGHDVIGLAQTGTGKTAAYALP 58
Query: 234 IMQRLL 239
++Q++L
Sbjct: 59 VIQKML 64
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 244 (91.0 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 65/192 (33%), Positives = 101/192 (52%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
+L L +M+ + F + TPIQ+ +P + GKDV G A+TG+GKT AF + + +L
Sbjct: 5 DLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLG-GKDVAGQAQTGTGKTAAFLISLFTKL 63
Query: 239 LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPI 298
L +G E + H RA+I+ PTREL +Q+ + + + I
Sbjct: 64 LRS---------GRGGE------RRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAI 108
Query: 299 VGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 358
GG+ KQ+ LK +VVVGTPGRL + + ++ + L + V+DEADRM + G
Sbjct: 109 YGGVDYMKQKNALKEGADVVVGTPGRLIDYL---KQKVYSLKEIEMLVIDEADRMFDMGF 165
Query: 359 FRELQSIIDMLP 370
+L+ I+ LP
Sbjct: 166 IADLRFILRRLP 177
Score = 55 (24.4 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 449 VDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKI 508
V +T + A ++E+ ++K L +L G RT++F + + L
Sbjct: 209 VAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKEGMERTMIFVNTKREAEFLDERLNA 268
Query: 509 LGIDVWTLHAQMQQRARLKL 528
+ ++QR RLK+
Sbjct: 269 NDFPCRVISGDVEQRKRLKI 288
Score = 41 (19.5 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 396 KRQTLVFSATI 406
KRQ L+FSAT+
Sbjct: 181 KRQNLMFSATL 191
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 251 (93.4 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 57 (25.1 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFS 530
G ++F T A ++S LK G ++ LH M Q R K+ S
Sbjct: 499 GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVIS 542
Score = 51 (23.0 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 268 (99.4 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 61/183 (33%), Positives = 102/183 (55%)
Query: 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAA 246
+K+ +F++PTP+Q P A G D++G ++TGSGKTL+F LP ++ +L
Sbjct: 151 IKNFLSKKFEKPTPVQSLGWPIAL-SGSDMLGISKTGSGKTLSFILPAIEHIL------- 202
Query: 247 KMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEK 306
+ + Y P + L++ PTRELA Q+ + + +N+ + I GG
Sbjct: 203 ------AQPRQSYYPGPSV--LVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRS 254
Query: 307 QERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366
Q+ L RP++VVGTPGR+ + M G+ + L +SF V+DEADR++E G +++ I
Sbjct: 255 QQLQLSRRPKIVVGTPGRIIDFMESGD---LSLKNISFLVVDEADRLMEMGFEQQIDGIF 311
Query: 367 DML 369
+ +
Sbjct: 312 NSI 314
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 276 (102.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 72/213 (33%), Positives = 113/213 (53%)
Query: 159 DAEEELVNEAEISTEFDAWNELRLHPLLMKSIY-RLQFKEPTPIQKACIPAAAHQGKDVI 217
D + V ++ W+ L L L I+ +L+F++P+ IQ +P G+DVI
Sbjct: 277 DLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTIL-SGRDVI 335
Query: 218 GAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELA 277
G A+TGSGKTL++ LP+++ + +D+ + P G LI++PTRELA
Sbjct: 336 GIAKTGSGKTLSYVLPMLRHI-----------QDQQFSKDNQGPIG----LILSPTRELA 380
Query: 278 LQVTDHLKGVAK-GINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHL 336
LQ+ + K N+RV GG S E Q LK E++VGTPGR+ +L++ +
Sbjct: 381 LQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRV 440
Query: 337 VELHTLSFFVLDEADRMIENGHFRELQSIIDML 369
+ L +F VLDEADRM + G ++ I+ +
Sbjct: 441 LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Score = 39 (18.8 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 394 RKKRQTLVFSAT 405
R RQT++FSAT
Sbjct: 474 RPDRQTVLFSAT 485
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 276 (102.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 72/213 (33%), Positives = 113/213 (53%)
Query: 159 DAEEELVNEAEISTEFDAWNELRLHPLLMKSIY-RLQFKEPTPIQKACIPAAAHQGKDVI 217
D + V ++ W+ L L L I+ +L+F++P+ IQ +P G+DVI
Sbjct: 277 DLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTIL-SGRDVI 335
Query: 218 GAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELA 277
G A+TGSGKTL++ LP+++ + +D+ + P G LI++PTRELA
Sbjct: 336 GIAKTGSGKTLSYVLPMLRHI-----------QDQQFSKDNQGPIG----LILSPTRELA 380
Query: 278 LQVTDHLKGVAK-GINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHL 336
LQ+ + K N+RV GG S E Q LK E++VGTPGR+ +L++ +
Sbjct: 381 LQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRV 440
Query: 337 VELHTLSFFVLDEADRMIENGHFRELQSIIDML 369
+ L +F VLDEADRM + G ++ I+ +
Sbjct: 441 LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Score = 39 (18.8 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 394 RKKRQTLVFSAT 405
R RQT++FSAT
Sbjct: 474 RPDRQTVLFSAT 485
>UNIPROTKB|Q5STU3 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 EMBL:CR942185 IPI:IPI00790636
SMR:Q5STU3 STRING:Q5STU3 Ensembl:ENST00000376177
Ensembl:ENST00000400293 Ensembl:ENST00000430703
Ensembl:ENST00000438578 Ensembl:ENST00000446341
Ensembl:ENST00000450987 Ensembl:ENST00000453488 Uniprot:Q5STU3
Length = 425
Score = 169 (64.5 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
A G DV+ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 261 (96.9 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 70/184 (38%), Positives = 106/184 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
+M +I + +++PT IQ +P G+DVIG A+TGSGKT AF LP++ ++++ E
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVL-SGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPE-- 295
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
+ D+G P G +I PTRELA Q+ K +K +RV + GGMS
Sbjct: 296 --LQRDEG-------PIG----VICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKH 342
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + LKA E+VV TPGRL +++ K L + S+ VLDEADRM + G +++SI
Sbjct: 343 EQFKELKAGCEIVVATPGRLIDMLK--MKALTMMRA-SYLVLDEADRMFDLGFEPQVRSI 399
Query: 366 IDML 369
+ +
Sbjct: 400 VGQI 403
Score = 48 (22.0 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 486 QGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527
+G +VF + A + I + L + V LH Q +R++
Sbjct: 473 EGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRME 514
Score = 43 (20.2 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 394 RKKRQTLVFSATI 406
R RQTL+FSAT+
Sbjct: 404 RPDRQTLLFSATM 416
>UNIPROTKB|Q13838 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0000346 "transcription export complex"
evidence=IDA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0043008
"ATP-dependent protein binding" evidence=IDA] [GO:0005687 "U4
snRNP" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
binding" evidence=IDA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 EMBL:BA000025 EMBL:CH471081
GO:GO:0016607 GO:GO:0005681 TCDB:3.A.18.1.1 EMBL:AL662847
EMBL:AL662801 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_BAT1 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX CTD:7919 KO:K12812
GO:GO:0000346 GO:GO:0030621 GO:GO:0046784 EMBL:Z37166 EMBL:BT009909
EMBL:AK222912 EMBL:AB088115 EMBL:AB103621 EMBL:AB202112
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 EMBL:BC000361 EMBL:BC013006 EMBL:AF029061
EMBL:AF029062 IPI:IPI00641829 IPI:IPI00848161 PIR:I37201
RefSeq:NP_004631.1 RefSeq:NP_542165.1 UniGene:Hs.254042
UniGene:Hs.730849 PDB:1T5I PDB:1T6N PDB:1XTI PDB:1XTJ PDB:1XTK
PDBsum:1T5I PDBsum:1T6N PDBsum:1XTI PDBsum:1XTJ PDBsum:1XTK
ProteinModelPortal:Q13838 SMR:Q13838 IntAct:Q13838
MINT:MINT-1032422 STRING:Q13838 PhosphoSite:Q13838 DMDM:2500529
PaxDb:Q13838 PRIDE:Q13838 DNASU:7919 Ensembl:ENST00000383508
Ensembl:ENST00000396172 Ensembl:ENST00000400295
Ensembl:ENST00000400296 Ensembl:ENST00000412106
Ensembl:ENST00000412330 Ensembl:ENST00000413678
Ensembl:ENST00000414440 Ensembl:ENST00000415689
Ensembl:ENST00000416863 Ensembl:ENST00000430784
Ensembl:ENST00000431360 Ensembl:ENST00000441425
Ensembl:ENST00000445218 Ensembl:ENST00000448296
Ensembl:ENST00000453138 Ensembl:ENST00000456476
Ensembl:ENST00000456666 Ensembl:ENST00000458640 GeneID:7919
KEGG:hsa:7919 UCSC:uc003ntt.3 GeneCards:GC06M031500 HGNC:HGNC:13917
HPA:CAB034012 MIM:142560 neXtProt:NX_Q13838 PharmGKB:PA25262
InParanoid:Q13838 PhylomeDB:Q13838 ChiTaRS:DDX39B
EvolutionaryTrace:Q13838 GenomeRNAi:7919 NextBio:30405
ArrayExpress:Q13838 Bgee:Q13838 Genevestigator:Q13838
GermOnline:ENSG00000198563 GO:GO:0043008 Uniprot:Q13838
Length = 428
Score = 169 (64.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
A G DV+ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>UNIPROTKB|Q29024 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IEA] [GO:0043008
"ATP-dependent protein binding" evidence=IEA] [GO:0030621 "U4 snRNA
binding" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005687 "U4 snRNP"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0016607
GO:GO:0005681 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000245 GO:GO:0004004 EMBL:AJ251914 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:Z34846 PIR:I47126
RefSeq:NP_001005157.1 UniGene:Ssc.11719 ProteinModelPortal:Q29024
SMR:Q29024 STRING:Q29024 PRIDE:Q29024 Ensembl:ENSSSCT00000001529
GeneID:448813 KEGG:ssc:448813 ArrayExpress:Q29024 Uniprot:Q29024
Length = 428
Score = 169 (64.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
A G DV+ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>MGI|MGI:99240 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=ISO] [GO:0000346 "transcription export complex"
evidence=ISO] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=ISO] [GO:0030621 "U4 snRNA binding" evidence=ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:99240 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:AF118128 EMBL:AY255786 EMBL:AY255787
EMBL:AC007080 EMBL:AK088867 EMBL:AK051034 EMBL:BC011067
EMBL:BC024859 IPI:IPI00409462 RefSeq:NP_001239386.1
RefSeq:NP_062667.1 UniGene:Mm.439827 ProteinModelPortal:Q9Z1N5
SMR:Q9Z1N5 IntAct:Q9Z1N5 STRING:Q9Z1N5 PhosphoSite:Q9Z1N5
PaxDb:Q9Z1N5 PRIDE:Q9Z1N5 Ensembl:ENSMUST00000068056
Ensembl:ENSMUST00000172549 Ensembl:ENSMUST00000173731 GeneID:53817
KEGG:mmu:53817 InParanoid:Q9Z1N5 NextBio:310679 Bgee:Q9Z1N5
CleanEx:MM_BAT1A Genevestigator:Q9Z1N5 Uniprot:Q9Z1N5
Length = 428
Score = 169 (64.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
+ A ++G + ++ V + +S + + L P L+++I F+ P+ +Q CIP A
Sbjct: 20 TAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 79
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
G DV+ A++G GKT F L +Q+L
Sbjct: 80 I-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>RGD|70923 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
assembly" evidence=IEA;ISO] [GO:0000346 "transcription export
complex" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005687 "U4 snRNP" evidence=IEA;ISO]
[GO:0005688 "U6 snRNP" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=IEA;ISO] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=IEA;ISO] [GO:0030621 "U4 snRNA binding" evidence=IEA;ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:70923 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:M75168 EMBL:AF387339 EMBL:AJ314857 EMBL:BC080243
IPI:IPI00215291 PIR:A42811 RefSeq:NP_579834.2 UniGene:Rn.202950
ProteinModelPortal:Q63413 SMR:Q63413 STRING:Q63413
World-2DPAGE:0004:Q63413 PRIDE:Q63413 Ensembl:ENSRNOT00000001115
GeneID:114612 KEGG:rno:114612 UCSC:RGD:70923 InParanoid:Q63413
NextBio:618775 ArrayExpress:Q63413 Genevestigator:Q63413
GermOnline:ENSRNOG00000000841 Uniprot:Q63413
Length = 428
Score = 169 (64.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
+ A ++G + ++ V + +S + + L P L+++I F+ P+ +Q CIP A
Sbjct: 20 TAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 79
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
G DV+ A++G GKT F L +Q+L
Sbjct: 80 I-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 232 (86.7 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 64/197 (32%), Positives = 107/197 (54%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ + L P L++++ L + PT IQ+ IP A +GKD++ A TGSGKT A+ +P++Q
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLAL-EGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK--GINVR 294
LL R+ ++E +R L++ PT+ELA Q ++ +A +VR
Sbjct: 68 LLLH-RKATGPVVEQA------------VRGLVLVPTKELARQAQSMIQQLATYCARDVR 114
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELH-TLSFFVLDEADRM 353
V + + Q +L +P+VVVGTP R+ +S ++ ++L +L V+DEAD +
Sbjct: 115 VANVSAAEDSVSQRAVLMEKPDVVVGTPSRI---LSHLQQDSLKLRDSLELLVVDEADLL 171
Query: 354 IENGHFRELQSIIDMLP 370
G EL+S++ LP
Sbjct: 172 FSFGFEEELKSLLCHLP 188
Score = 68 (29.0 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 459 NKLEESFIECK-EEDKDAYLYYILSVHG-QGRTIVFCTSIAALRHISSLLKILGIDVWTL 516
++L++ + C+ EEDK LY +L + +G++++F ++ + L+ I L
Sbjct: 229 DQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVL 288
Query: 517 HAQMQQRARLKLFSQ 531
+ ++ R+R + SQ
Sbjct: 289 NGELPLRSRCHIISQ 303
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 238 (88.8 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 58/159 (36%), Positives = 92/159 (57%)
Query: 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271
QG+D+I AA+TG+GKT +F LPI+++L + + + K +RALI+
Sbjct: 37 QGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKK----------------RVRALILV 80
Query: 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331
PTRELA+QV + ++ K ++ + + GG+ + Q++ L +V+V TPGRL +L
Sbjct: 81 PTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLY-- 138
Query: 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
G++ V + VLDEADRM++ G + IID LP
Sbjct: 139 GQR-AVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 137 (53.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 29/77 (37%), Positives = 54/77 (70%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
++++L L +L++++ +L +++PT IQ IP QG+D+I AA+TG+GKT +F LPI+
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVIL-QGRDLIAAAQTGTGKTASFVLPIL 60
Query: 236 QRLLE---EREKAAKML 249
++L + +R+K + L
Sbjct: 61 EKLRQGQTQRKKRVRAL 77
Score = 63 (27.2 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 25/100 (25%), Positives = 44/100 (44%)
Query: 435 TLSERAGMRANVAIVDLTNMCVLANKLEES-----FIECKEEDKDAYLYYILSVHGQGRT 489
TLS + A A+ D + + AN+ +S I ++ K A L ++++ +
Sbjct: 187 TLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQA 246
Query: 490 IVFC-TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKL 528
++F T A + +S L K GI H+ Q R +L
Sbjct: 247 LIFIETKHGAAKLVSQLEK-RGIHAEAFHSGRSQAIRAQL 285
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 238 (88.8 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 58/159 (36%), Positives = 92/159 (57%)
Query: 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271
QG+D+I AA+TG+GKT +F LPI+++L + + + K +RALI+
Sbjct: 37 QGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKK----------------RVRALILV 80
Query: 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331
PTRELA+QV + ++ K ++ + + GG+ + Q++ L +V+V TPGRL +L
Sbjct: 81 PTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLY-- 138
Query: 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
G++ V + VLDEADRM++ G + IID LP
Sbjct: 139 GQR-AVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 137 (53.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 29/77 (37%), Positives = 54/77 (70%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
++++L L +L++++ +L +++PT IQ IP QG+D+I AA+TG+GKT +F LPI+
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVIL-QGRDLIAAAQTGTGKTASFVLPIL 60
Query: 236 QRLLE---EREKAAKML 249
++L + +R+K + L
Sbjct: 61 EKLRQGQTQRKKRVRAL 77
Score = 63 (27.2 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 25/100 (25%), Positives = 44/100 (44%)
Query: 435 TLSERAGMRANVAIVDLTNMCVLANKLEES-----FIECKEEDKDAYLYYILSVHGQGRT 489
TLS + A A+ D + + AN+ +S I ++ K A L ++++ +
Sbjct: 187 TLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQA 246
Query: 490 IVFC-TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKL 528
++F T A + +S L K GI H+ Q R +L
Sbjct: 247 LIFIETKHGAAKLVSQLEK-RGIHAEAFHSGRSQAIRAQL 285
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 264 (98.0 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 68/209 (32%), Positives = 112/209 (53%)
Query: 161 EEELVNEAEISTEFDA-WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGA 219
E +V E + E + + LHP ++K++ +K PTPIQ CIPA H+G DVIG
Sbjct: 107 EIAVVQEGPVRVEPALRFEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAI-HKGHDVIGI 165
Query: 220 AETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE-EAEKYAP-KGHLRALIITPTRELA 277
A+TGSGKT AF +P++ +L+ + +K A + E + + P + +I+ PTRELA
Sbjct: 166 AQTGSGKTAAFLIPVINKLMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELA 225
Query: 278 LQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLV 337
+Q + + + +R + GG + Q R + +++ TPGRL M E L+
Sbjct: 226 IQAFNEARKLCYRSMLRPGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDKPE--LL 283
Query: 338 ELHTLSFFVLDEADRMIENGHFRELQSII 366
L + + V+DEAD M+ +++ I+
Sbjct: 284 NLQRVRYVVIDEADEMLTADWEEDMKKIM 312
Score = 45 (20.9 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 26/86 (30%), Positives = 37/86 (43%)
Query: 400 LVFSATIALSA-DF-RKKLK--HGSLK-SKQSVNGLNSIETLSERAGMRANVAIVDLTNM 454
L+FSAT D R+ L H L+ + N I+T+ E A M A+ DL N
Sbjct: 324 LLFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSNIIQTVIETAPMNKKRALNDLINS 383
Query: 455 CVLANKLEESFIECK--EEDKDAYLY 478
+ F+ K ++ D YLY
Sbjct: 384 MPPQRTI--IFVNNKWTADELDDYLY 407
>UNIPROTKB|Q5WR10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784
"intronless viral mRNA export from host nucleus" evidence=IEA]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA]
[GO:0030621 "U4 snRNA binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=IEA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:AY423389
RefSeq:NP_001014399.1 UniGene:Cfa.10131 ProteinModelPortal:Q5WR10
SMR:Q5WR10 Ensembl:ENSCAFT00000036511 GeneID:474839 KEGG:cfa:474839
InParanoid:Q5WR10 NextBio:20850784 Uniprot:Q5WR10
Length = 428
Score = 169 (64.5 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 111 (44.1 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
+ A +G + ++ V + +S + + L P L+++I F+ P+ +Q CIP A
Sbjct: 20 TAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 79
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
G DV+ A++G GKT F L +Q+L
Sbjct: 80 I-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 264 (98.0 bits), Expect = 3.7e-20, Sum P(3) = 3.7e-20
Identities = 70/216 (32%), Positives = 119/216 (55%)
Query: 159 DAEEELVNEAE---ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKD 215
DA E++ E + + + E+ L L +I R ++ +PTP+Q+ IP +G+D
Sbjct: 140 DAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILL-EGRD 198
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275
++ A+TGSGKT AF PI+ +++++ + +G Y P A+I++PTRE
Sbjct: 199 LMACAQTGSGKTAAFCFPIISGIMKDQH----VQRPRGSRTV-Y-PL----AVILSPTRE 248
Query: 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335
LA Q+ D K + V+VV GG +Q R L+ +++V TPGRL +L+ E+
Sbjct: 249 LASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL---ERA 305
Query: 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371
V + + F LDEADRM++ G +++ I++ + M
Sbjct: 306 RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 341
Score = 43 (20.2 bits), Expect = 3.7e-20, Sum P(3) = 3.7e-20
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 394 RKKRQTLVFSATIA-----LSADF 412
R RQTL+FSAT L+ADF
Sbjct: 344 RGVRQTLLFSATFPREIQRLAADF 367
Score = 38 (18.4 bits), Expect = 3.7e-20, Sum P(3) = 3.7e-20
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 470 EEDKDAYLYYILSV---HG-QGR---TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522
+ DK ++L +L +G QG+ T+VF + + + L I G ++H Q
Sbjct: 395 DSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQ 454
Query: 523 RAR---LKLF 529
+ R LK F
Sbjct: 455 QEREVALKAF 464
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 251 (93.4 bits), Expect = 3.9e-20, Sum P(3) = 3.9e-20
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 54 (24.1 bits), Expect = 3.9e-20, Sum P(3) = 3.9e-20
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFS 530
G ++F T A +++ LK G ++ LH M Q R K+ S
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Score = 51 (23.0 bits), Expect = 3.9e-20, Sum P(3) = 3.9e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 251 (93.4 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 54 (24.1 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFS 530
G ++F T A +++ LK G ++ LH M Q R K+ S
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Score = 51 (23.0 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 251 (93.4 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 54 (24.1 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFS 530
G ++F T A +++ LK G ++ LH M Q R K+ S
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Score = 51 (23.0 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 250 (93.1 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 67/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 259 LMHQIRKSEYTQPTPIQCQGVPVAM-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 315
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 316 ---LEP-GD--------GPI-AVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 362
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +++ V DEADRM + G +++SI
Sbjct: 363 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI 419
Score = 51 (23.0 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 418 SIASHVRPDRQTLLFSAT------FRKKIE 441
Score = 49 (22.3 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
G ++F T A +++ LK ++ LH M Q R K+ S+
Sbjct: 494 GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISE 538
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 184 (69.8 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 66/279 (23%), Positives = 127/279 (45%)
Query: 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKAR 314
E K G +RA+I++P+RELALQ +K + G N++ + ++GG S E+ + +
Sbjct: 159 ERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTK 218
Query: 315 PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 374
P+++V TPGR L + +L T+ + V DEADR+ E G +L ++ LP
Sbjct: 219 PDIIVCTPGRFLHLKVEMQ---YDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQ 275
Query: 375 SNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSI- 433
S + ++ V + + A +S D + + K+++ N L +
Sbjct: 276 SLLFSATLPRSLVDFAKAGLTNPVLVRLDAESKIS-DQLQMAYFTTKKNEREANLLYILQ 334
Query: 434 ETLSERAGMRANVA-IVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGR---- 488
E + G + + D+ + ++ ++ E +++ K Y + + R
Sbjct: 335 EVIKMPLGSEEQIKKLKDMDKRKIDSDSEDDDDDEERKKGKKRYKFKKERLPPANRLPSP 394
Query: 489 --TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
TIVF + + +++ LL+ G V ++ + Q AR
Sbjct: 395 HSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHAR 433
Score = 137 (53.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 154 SNGPDDAEEELVNEAEISTEFDA-------WNELRLHPLLMKSIYRLQFKEPTPIQKACI 206
+N DD ++ +N I+ A + L ++ +I + +K+PTPIQ+ I
Sbjct: 71 NNDDDDDDDSKINSYFINNNPTAKKAKAGSFASFGLTKFILANIAKKGYKQPTPIQRKTI 130
Query: 207 PAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
P +G+DV+G A TGSGKT AF LP+++RL
Sbjct: 131 PLIM-EGRDVVGMARTGSGKTAAFVLPLIERL 161
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 251 (93.4 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 54 (24.1 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFS 530
G ++F T A +++ LK G ++ LH M Q R K+ S
Sbjct: 498 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 541
Score = 51 (23.0 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 269 (99.8 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 65/191 (34%), Positives = 109/191 (57%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
W + ++ +M + + ++ +PT IQ IP+ G+DVIG A+TGSGKTLAF LP+ +
Sbjct: 306 WAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIM-SGRDVIGIAKTGSGKTLAFLLPMFR 364
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
+L++ E LE+ G+ G + A+I+ PTRELA+Q AK + ++V
Sbjct: 365 HILDQPE-----LEE-GD--------GPI-AVILAPTRELAMQTYKEANKFAKPLGLKVA 409
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
GG+ +Q LK E+VV TPGR+ ++++ + L +++ VLDEADRM +
Sbjct: 410 CTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDK 469
Query: 357 GHFRELQSIID 367
G ++ +++
Sbjct: 470 GFEPQIMKVVN 480
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 169 (64.5 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 43/146 (29%), Positives = 76/146 (52%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
A+++ PTRELA Q+++ + + I VR V IVGGM Q L +P V+V TPGRL
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNC 386
+ + + L L + ++DEADR+++ + I+ ++P + + T
Sbjct: 177 DHLENTKGF--SLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMT--- 231
Query: 387 VTVSSLQRKKRQTLVFSATIALSADF 412
S +++ +R +L +A+S+ F
Sbjct: 232 ---SKVEKLQRASLHQPVRVAVSSKF 254
Score = 144 (55.7 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 151 VAVSNGPDDAEEELVNEAEISTEFD-AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
+ SN + E N + E + EL + L ++ +L FK PTPIQ+ IP
Sbjct: 21 IETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVV 80
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
++ +DVIG A+TGSGKT AF LP++Q L
Sbjct: 81 LNK-RDVIGLAQTGSGKTAAFALPVIQEL 108
Score = 86 (35.3 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 431 NSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTI 490
+ +E L +RA + V + +++ + L + ++ + KD YL Y+++ I
Sbjct: 232 SKVEKL-QRASLHQPVRVA-VSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSII 289
Query: 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARL 526
+F ++ + ++ LL+ LG LH Q+ Q RL
Sbjct: 290 IFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRL 325
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 255 (94.8 bits), Expect = 4.5e-20, Sum P(3) = 4.5e-20
Identities = 69/218 (31%), Positives = 110/218 (50%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGK 214
N DD + + I +++ ++ L +L+ +I ++ +PTP+QK+ +P + +
Sbjct: 227 NAYDDDDISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIIL-KNR 285
Query: 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHL-RALIITPT 273
D++ A+TGSGKT AF PI+ +L + A G P+ RAL++ PT
Sbjct: 286 DLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPG------VPRAACPRALVLAPT 339
Query: 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333
RELA Q+ D + G V V I GG Q L +++V T GRL +L+ G
Sbjct: 340 RELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGR 399
Query: 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371
V L + + VLDEADRM++ G +++ II M
Sbjct: 400 ---VSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDM 434
Score = 50 (22.7 bits), Expect = 4.5e-20, Sum P(3) = 4.5e-20
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 470 EEDKDAYLY-YILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
EEDK++YL Y+ + G ++F + + ++ L +H + Q R
Sbjct: 487 EEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPER 543
Score = 44 (20.5 bits), Expect = 4.5e-20, Sum P(3) = 4.5e-20
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 395 KKRQTLVFSATIA-----LSADFRKK---LKHGSLKSKQSV 427
+ RQTL+FSAT L+ADF LK G + + Q++
Sbjct: 438 RDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNI 478
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 181 (68.8 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 45/111 (40%), Positives = 62/111 (55%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K LRAL++TPTRELA QV + +V + GG+ST+KQ LK ++++ T
Sbjct: 74 KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372
PGRL +L+ L + TL F DEADRM++ G E+ I LP T
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVF---DEADRMLDMGFKEEIDQITQYLPKT 181
Score = 122 (48.0 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
++ L L+K+I + EPT IQK IP + DV+ A+TG+GKT AF LPI+Q
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAK-HDVMARAQTGTGKTAAFALPILQ 65
Query: 237 RLL 239
+L+
Sbjct: 66 QLI 68
Score = 44 (20.5 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 395 KKRQTLVFSATIA 407
K +QTL+FSAT A
Sbjct: 180 KTKQTLLFSATFA 192
Score = 42 (19.8 bits), Expect = 7.5e-20, Sum P(3) = 7.5e-20
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 394 RKKRQTLVFSATIALSADFRKKLKHGSLKS 423
R +Q LVF+ T + D K++ +KS
Sbjct: 244 RNWKQVLVFTRTKQCADDLAKEMTKDGVKS 273
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 181 (68.8 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 45/111 (40%), Positives = 62/111 (55%)
Query: 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT 321
K LRAL++TPTRELA QV + +V + GG+ST+KQ LK ++++ T
Sbjct: 74 KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 322 PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372
PGRL +L+ L + TL F DEADRM++ G E+ I LP T
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVF---DEADRMLDMGFKEEIDQITQYLPKT 181
Score = 122 (48.0 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
++ L L+K+I + EPT IQK IP + DV+ A+TG+GKT AF LPI+Q
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAK-HDVMARAQTGTGKTAAFALPILQ 65
Query: 237 RLL 239
+L+
Sbjct: 66 QLI 68
Score = 44 (20.5 bits), Expect = 4.7e-20, Sum P(3) = 4.7e-20
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 395 KKRQTLVFSATIA 407
K +QTL+FSAT A
Sbjct: 180 KTKQTLLFSATFA 192
Score = 42 (19.8 bits), Expect = 7.5e-20, Sum P(3) = 7.5e-20
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 394 RKKRQTLVFSATIALSADFRKKLKHGSLKS 423
R +Q LVF+ T + D K++ +KS
Sbjct: 244 RNWKQVLVFTRTKQCADDLAKEMTKDGVKS 273
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 257 (95.5 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 65/191 (34%), Positives = 105/191 (54%)
Query: 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEE 241
L LL+++I +F +PTP+QK +P A+ G+D++ A+TGSGKT F P+ L E
Sbjct: 149 LDGLLLENIKLARFTKPTPVQKYSVPIVAN-GRDLMACAQTGSGKTGGFLFPV----LSE 203
Query: 242 REKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGG 301
K + + + Y K + A+I+ PTRELA Q+ D K V+ + GG
Sbjct: 204 SFKTGPSPQPESQ-GSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGG 262
Query: 302 MSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 361
Q R ++ +++V TPGRL +L+ G+ + L + + VLDEADRM++ G +
Sbjct: 263 SPIGNQLREIERGCDLLVATPGRLNDLLERGK---ISLANVKYLVLDEADRMLDMGFEPQ 319
Query: 362 LQSIIDMLPMT 372
++ I++ MT
Sbjct: 320 IRHIVEDCDMT 330
Score = 47 (21.6 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 458 ANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
+ + + + + +DK + L +LS G T++F + ++ L + +H
Sbjct: 371 SENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIH 430
Query: 518 AQMQQRAR 525
Q R
Sbjct: 431 GDRTQSER 438
Score = 40 (19.1 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 396 KRQTLVFSAT 405
+RQTL+FSAT
Sbjct: 334 ERQTLMFSAT 343
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 182 (69.1 bits), Expect = 5.5e-20, Sum P(4) = 5.5e-20
Identities = 38/105 (36%), Positives = 66/105 (62%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
R LI+ PTRELA QV ++ + K + + + ++GG+S ++QE LL+ +V++ TPGRL
Sbjct: 77 RCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRL 136
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ G+ ++ + TL ++DEADRM++ G +++ I LP
Sbjct: 137 MDQFDRGKLLMMGVETL---IIDEADRMLDMGFIPDIEKICAKLP 178
Score = 124 (48.7 bits), Expect = 5.5e-20, Sum P(4) = 5.5e-20
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
++K++ + PTPIQ+ IP G DV G A+TG+GKT AF LP++QRL R +A
Sbjct: 15 ILKAVTESGYTIPTPIQREAIPHIL-MGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARA 73
Score = 43 (20.2 bits), Expect = 5.5e-20, Sum P(4) = 5.5e-20
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 397 RQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSE 438
RQTL+FSAT K K + + ET+S+
Sbjct: 181 RQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQ 222
Score = 39 (18.8 bits), Expect = 5.5e-20, Sum P(4) = 5.5e-20
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
IVFC + +++ L G D +H + Q R
Sbjct: 252 IVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVR 287
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 265 (98.3 bits), Expect = 6.0e-20, P = 6.0e-20
Identities = 63/197 (31%), Positives = 114/197 (57%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
++++ + ++M +I ++ PTP+QK IP + +D++ A+TGSGKT AF LPI+
Sbjct: 181 FSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILS 239
Query: 237 RLLEERE-KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
++ + +A K +++ G + K + +L++ PTRELA+Q+ + + + VR
Sbjct: 240 QIYTDGPGEALKAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRP 296
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
+ GG T +Q R L+ ++V TPGRL ++M G+ + L + VLDEADRM++
Sbjct: 297 CVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRMLD 353
Query: 356 NGHFRELQSII--DMLP 370
G +++ I+ D +P
Sbjct: 354 MGFEPQIRRIVEQDTMP 370
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 159 (61.0 bits), Expect = 6.8e-20, Sum P(3) = 6.8e-20
Identities = 44/127 (34%), Positives = 66/127 (51%)
Query: 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMS 303
K A L E + ++ + RALI++PTRELALQ K + K +R I+GG
Sbjct: 146 KTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDK 205
Query: 304 TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363
E Q L P++++ TPGRL + E +L +L ++ + +D D + E G +LQ
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAV--EMNL-KLQSVEY--VDSIDWLFEMGFAEQLQ 260
Query: 364 SIIDMLP 370
II LP
Sbjct: 261 EIIGRLP 267
Score = 121 (47.7 bits), Expect = 6.8e-20, Sum P(3) = 6.8e-20
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
+ K I + +K PTPIQ+ IP GKDV+ A TGSGKT F +P+ +RL
Sbjct: 107 VFKGIMKKGYKVPTPIQRKTIPVIL-DGKDVVAMARTGSGKTACFLIPMFERL 158
Score = 84 (34.6 bits), Expect = 6.8e-20, Sum P(3) = 6.8e-20
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 439 RAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILS--VHGQGRTIVFCTSI 496
RAG+ V ++ L L +L+ SF +E+ K A L ++L V Q +T+VF +
Sbjct: 288 RAGLTEPV-LIRLDVDAKLNEQLKTSFFLVREDTKAAVLLHLLRTVVRPQDQTVVFVATK 346
Query: 497 AALRHISSLLKILGIDVWTLHAQMQQRAR 525
++S LL G+ +++ + Q AR
Sbjct: 347 HHAEYLSELLTTQGVSCTHIYSALDQTAR 375
>UNIPROTKB|F6UN21 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00642800 SMR:F6UN21 Ensembl:ENST00000416969
Ensembl:ENST00000419338 Ensembl:ENST00000420958
Ensembl:ENST00000436919 Ensembl:ENST00000436995
Ensembl:ENST00000446909 Ensembl:ENST00000449863 Uniprot:F6UN21
Length = 236
Score = 169 (64.5 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
A G DV+ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
>ZFIN|ZDB-GENE-040426-1259 [details] [associations]
symbol:ddx39b "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39B" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-1259 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX511233
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 KO:K12812
OMA:NNPLINC EMBL:FP085397 EMBL:BC055240 IPI:IPI00502330
RefSeq:NP_957237.1 UniGene:Dr.5423 SMR:Q7SXU7 STRING:Q7SXU7
Ensembl:ENSDART00000052355 GeneID:393917 KEGG:dre:393917 CTD:393917
InParanoid:Q7SXU7 NextBio:20814893 Uniprot:Q7SXU7
Length = 435
Score = 166 (63.5 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + +V+V GG+S +K E +LK P VVVG
Sbjct: 119 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVG 178
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 179 TPGRILALSRN--KSL-NLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 226
Score = 113 (44.8 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 154 SNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG 213
S+G +E V + +S + + L P L+++I F+ P+ +Q CIP A G
Sbjct: 31 SDGIISIRKEGVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LG 89
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRL 238
DV+ A++G GKT F L +Q+L
Sbjct: 90 MDVLCQAKSGMGKTAVFVLATLQQL 114
Score = 69 (29.3 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 269 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAM 328
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 329 PQDERLARYQQFKDFQRR 346
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 242 (90.2 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 65/196 (33%), Positives = 106/196 (54%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ + L P L++++ L + PT IQ+ IP A +GKD++ A TGSGKT A+ +P++Q
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLAL-EGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK--GINVR 294
LL ++ M E+A +R L++ PT+ELA Q ++ +A +VR
Sbjct: 68 LLLHKKATGPVM-----EQA--------VRGLVLVPTKELARQAQSMIQQLASYCARDVR 114
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
V + + Q +L +P+VVVGTP R+ + +K+L +L V+DEAD +
Sbjct: 115 VANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQ--QKNLKLRDSLELLVVDEADLLF 172
Query: 355 ENGHFRELQSIIDMLP 370
G EL+S++ LP
Sbjct: 173 SFGFEDELKSLLCHLP 188
Score = 63 (27.2 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 459 NKLEESFIECK-EEDKDAYLYYILSVHG-QGRTIVFCTSIAALRHISSLLKILGIDVWTL 516
++L++ + C+ EEDK LY +L + +G+ ++F ++ + L+ I L
Sbjct: 229 DQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVL 288
Query: 517 HAQMQQRARLKLFSQ 531
+ ++ R+R + SQ
Sbjct: 289 NGELPLRSRCHIISQ 303
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 248 (92.4 bits), Expect = 9.2e-20, Sum P(3) = 9.2e-20
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 54 (24.1 bits), Expect = 9.2e-20, Sum P(3) = 9.2e-20
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFS 530
G ++F T A +++ LK G ++ LH M Q R K+ S
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Score = 51 (23.0 bits), Expect = 9.2e-20, Sum P(3) = 9.2e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 251 (93.4 bits), Expect = 9.8e-20, Sum P(3) = 9.8e-20
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAL-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +S+ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 9.8e-20, Sum P(3) = 9.8e-20
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
Score = 50 (22.7 bits), Expect = 9.8e-20, Sum P(3) = 9.8e-20
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKL 528
G ++F T A +++ LK G ++ LH M Q R K+
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV 540
>UNIPROTKB|Q3T147 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9913 "Bos taurus" [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0043008 "ATP-dependent protein
binding" evidence=IEA] [GO:0030621 "U4 snRNA binding" evidence=IEA]
[GO:0017070 "U6 snRNA binding" evidence=IEA] [GO:0010501 "RNA
secondary structure unwinding" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0000346 "transcription export
complex" evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 GO:GO:0006406 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000245
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010501 GO:GO:0017070 HSSP:Q5STU4 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 EMBL:BC102131
IPI:IPI00690141 RefSeq:NP_001028801.1 UniGene:Bt.4945
ProteinModelPortal:Q3T147 SMR:Q3T147 STRING:Q3T147 PRIDE:Q3T147
Ensembl:ENSBTAT00000029090 GeneID:540191 KEGG:bta:540191 CTD:7919
InParanoid:Q3T147 KO:K12812 OMA:NAENPAI NextBio:20878478
ArrayExpress:Q3T147 GO:GO:0000346 GO:GO:0005687 GO:GO:0005688
GO:GO:0030621 GO:GO:0046784 Uniprot:Q3T147
Length = 428
Score = 164 (62.8 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 42/111 (37%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + +V+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
A G DV+ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 187 (70.9 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 44/102 (43%), Positives = 64/102 (62%)
Query: 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGR 324
L L I+PTRELALQ+ D+L + V V + GG+S + Q R +K VVV TPGR
Sbjct: 224 LSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGR 282
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366
L +L++ G + L +++ VLDEADRM+E G ++++II
Sbjct: 283 LVDLINDGA---INLGKVNYLVLDEADRMLEKGFEEDIKTII 321
Score = 124 (48.7 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 194 QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLL 239
+F +PTPIQ P GKDVIG AETGSGKT AFG+P + ++
Sbjct: 172 KFDKPTPIQSVSWPFLL-SGKDVIGVAETGSGKTFAFGVPAINNII 216
Score = 45 (20.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 236 QRLLEEREKAAKM-LEDKGEEAEKYAPK 262
QR LE++EK K +DK E+ EK K
Sbjct: 63 QRKLEKQEKKDKKDKKDKKEKKEKKEKK 90
Score = 45 (20.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 377 KGQSEQTQNCVTVSSLQRKKRQTLVFSAT 405
KG E + + S+ +RQTL+F+AT
Sbjct: 311 KGFEEDIKTII--SNTSNSERQTLMFTAT 337
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 263 (97.6 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 68/208 (32%), Positives = 115/208 (55%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
++++++ + ++M +I ++ PTP+QK IP + +D++ A+TGSGKT AF LP+
Sbjct: 223 ESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTK-RDLMACAQTGSGKTAAFLLPV 281
Query: 235 MQRLLEEREKAAKMLEDKGEEAE--KYAP-KGHLRALIITPTRELALQVTDHLKGVAKGI 291
+ ++ E A + E KY K + +L++ PTRELALQ+ D + A
Sbjct: 282 LSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRS 341
Query: 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 351
VR + GG +Q R L+ ++V TPGRL ++M G+ + L + VLDEAD
Sbjct: 342 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDYCKYLVLDEAD 398
Query: 352 RMIENGHFRELQSII--DMLPMTNGSNK 377
RM++ G +++ I+ D +P GS +
Sbjct: 399 RMLDMGFEPQIRRIVEQDTMP-PKGSRQ 425
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 171 (65.3 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 36/99 (36%), Positives = 60/99 (60%)
Query: 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327
LI+ PTREL LQV D +K K + ++ V + GG+ Q LK +++V TPGRL +
Sbjct: 431 LILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLLD 490
Query: 328 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366
+ G +L++ + V+DEADR+++ G ++L+ I+
Sbjct: 491 FLENGNINLLKC---IYVVIDEADRLLDMGFEKQLRKIM 526
Score = 135 (52.6 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 194 QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEERE 243
+F EPT IQK P A GKD+IG AETGSGKTLAF LP +L+ +E
Sbjct: 306 KFSEPTAIQKITWPIAL-SGKDLIGVAETGSGKTLAFVLPCFMHILKHKE 354
Score = 51 (23.0 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 17/79 (21%), Positives = 36/79 (45%)
Query: 458 ANK-LEESFIECKEED-KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWT 515
ANK +E++ I D K L ++ + + ++FC + ++ L+ + +
Sbjct: 570 ANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALS 629
Query: 516 LHAQMQQRARLKLFSQMIT 534
+H QQR R ++ + T
Sbjct: 630 IHGDKQQRERDRILNNYKT 648
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 239 (89.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 62/191 (32%), Positives = 100/191 (52%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A+ E L K+I + + + TP+QK IP G+D++ A+TGSGKT AF LPI+
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVI-QAGRDLMSCAQTGSGKTAAFLLPIV 226
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
R++++ G A + + + +I+ PTREL Q+ + G +R
Sbjct: 227 DRMMKD-----------GVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRP 275
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V I GG T R + ++ TPGRL +++ G+ LVE+ + VLDEADRM++
Sbjct: 276 VVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEV---KYLVLDEADRMLD 332
Query: 356 NGHFRELQSII 366
G +++ +I
Sbjct: 333 MGFGLDMKKLI 343
Score = 65 (27.9 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 25/121 (20%), Positives = 51/121 (42%)
Query: 411 DFRKKLKHGSLKSKQSVNGLNSIETLSER----AG--MRANVAIVDLTNMCVLANKLEES 464
D +K + + + SK L T E AG ++ + + + N C + ++++
Sbjct: 338 DMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQN 397
Query: 465 FIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRA 524
++ K L IL G RT+VF + ++++ L + ++H +QR
Sbjct: 398 ILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRE 457
Query: 525 R 525
R
Sbjct: 458 R 458
Score = 42 (19.8 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 394 RKKRQTLVFSAT 405
+ +RQTL+FSAT
Sbjct: 351 KDRRQTLMFSAT 362
>UNIPROTKB|F6TRA5 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00796920 SMR:F6TRA5 Ensembl:ENST00000428098
Ensembl:ENST00000438301 Ensembl:ENST00000438433
Ensembl:ENST00000444726 Ensembl:ENST00000446272
Ensembl:ENST00000449100 Ensembl:ENST00000455645 Uniprot:F6TRA5
Length = 238
Score = 169 (64.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + NV+V GG+S +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 112 (44.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 151 VAVSNGPDDAE---EELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIP 207
V + G D AE ++ V + +S + + L P L+++I F+ P+ +Q CIP
Sbjct: 18 VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP 77
Query: 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
A G DV+ A++G GKT F L +Q+L
Sbjct: 78 QAI-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 260 (96.6 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 81/214 (37%), Positives = 111/214 (51%)
Query: 171 STEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAF 230
+TE + +L + +++++ K P IQ+ +P A G+DVIG A TG GKT AF
Sbjct: 7 TTE-STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLAL-DGEDVIGQARTGMGKTFAF 64
Query: 231 GLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKG 290
G+P++QR+ G AP RAL++ PTREL LQVTD L K
Sbjct: 65 GVPLLQRITS----------GDGTRPLTGAP----RALVVVPTRELCLQVTDDLATAGKY 110
Query: 291 IN----------VR----VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHL 336
+ VR VV I GG E Q L+A +VVVGTPGRL +L G HL
Sbjct: 111 LTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQG--HL 168
Query: 337 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+L LS VLDEAD M++ G +++ I+ +P
Sbjct: 169 -QLGGLSVLVLDEADEMLDLGFLPDIERILRQIP 201
>WB|WBGene00010280 [details] [associations]
symbol:F58G11.2a species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:Z81094 GeneID:179855
KEGG:cel:CELE_F58G11.2 CTD:179855 RefSeq:NP_001256533.1
ProteinModelPortal:P90897 SMR:P90897 STRING:P90897 PaxDb:P90897
EnsemblMetazoa:F58G11.2a UCSC:F58G11.2 WormBase:F58G11.2a
InParanoid:P90897 OMA:HGRPDDR NextBio:907138 Uniprot:P90897
Length = 959
Score = 250 (93.1 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 66/202 (32%), Positives = 106/202 (52%)
Query: 156 GPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKD 215
G D A E + AE +W LHP +++++ R+++ IQ A IP G D
Sbjct: 363 GQDRAVE--IRNAEKDVRLTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVL-DGHD 419
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLE-EREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274
V+G AET +GKT AFGLPI+ ++L + E K +D G P ALI+ PTR
Sbjct: 420 VLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDG-------PL----ALILAPTR 468
Query: 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK 334
ELA Q+ + L+ + ++ V+ G + ++ ++++GT GR+ + +
Sbjct: 469 ELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTV--KS 526
Query: 335 HLVELHTLSFFVLDEADRMIEN 356
H+ LH L F V DEADR++++
Sbjct: 527 HISLLH-LRFLVFDEADRLLQD 547
Score = 61 (26.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 457 LANKLEESFIECKE-EDKDAYLYYIL--SVHGQG-RTIVFCTSIAALRHISSLLKILGID 512
L+ ++ F ECK +K+A L IL +V+G+ +TI+F ++ L G+
Sbjct: 612 LSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGML 671
Query: 513 VWTLHAQMQQRARLKLFS 530
TLH Q R KL +
Sbjct: 672 AQTLHGDRSQDMREKLIN 689
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 239 (89.2 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 62/191 (32%), Positives = 100/191 (52%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
A+ E L K+I + + + TP+QK IP G+D++ A+TGSGKT AF LPI+
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVI-QAGRDLMSCAQTGSGKTAAFLLPIV 226
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRV 295
R++++ G A + + + +I+ PTREL Q+ + G +R
Sbjct: 227 DRMMKD-----------GVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRP 275
Query: 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355
V I GG T R + ++ TPGRL +++ G+ LVE+ + VLDEADRM++
Sbjct: 276 VVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEV---KYLVLDEADRMLD 332
Query: 356 NGHFRELQSII 366
G +++ +I
Sbjct: 333 MGFGLDMKKLI 343
Score = 65 (27.9 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 25/121 (20%), Positives = 51/121 (42%)
Query: 411 DFRKKLKHGSLKSKQSVNGLNSIETLSER----AG--MRANVAIVDLTNMCVLANKLEES 464
D +K + + + SK L T E AG ++ + + + N C + ++++
Sbjct: 338 DMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQN 397
Query: 465 FIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRA 524
++ K L IL G RT+VF + ++++ L + ++H +QR
Sbjct: 398 ILQVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRE 457
Query: 525 R 525
R
Sbjct: 458 R 458
Score = 42 (19.8 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 394 RKKRQTLVFSAT 405
+ +RQTL+FSAT
Sbjct: 351 KDRRQTLMFSAT 362
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 168 (64.2 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 261 PKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVV 318
P G + L++ TRELA Q+ D K + NV+ I GG+ + + L+K + P ++
Sbjct: 114 PNG-ITTLVLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKPNII 172
Query: 319 VGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
+GTPGR+ +L S G L E+ F+LDE D M+E+ R ++Q I ++P
Sbjct: 173 IGTPGRILQLASEGALSLKEIKQ---FILDECDTMLESLDMRKDVQKIFKLIP 222
Score = 112 (44.5 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 153 VSNGPDDAEEELVNEAE--ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAA 210
V N D + + N A+ ++ + E L P L + I F+ P+ +Q CIP A
Sbjct: 24 VQNDVTDTKNKTANRADTHVAMHSSGFREFLLKPELERVIGDCGFEHPSEVQNECIPQAI 83
Query: 211 HQGKDVIGAAETGSGKTLAFGLPIMQRL 238
G DVI A++G GKT F L +Q++
Sbjct: 84 -LGTDVICQAKSGMGKTAVFVLSTLQQI 110
Score = 64 (27.6 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 13/69 (18%), Positives = 34/69 (49%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ ++ EE K+ L +L + ++F S+ ++ +L+ +G +H +
Sbjct: 265 LQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDL 324
Query: 521 QQRARLKLF 529
Q+ R++ +
Sbjct: 325 DQKDRIEQY 333
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 250 (93.1 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 67/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 264 LMHQIRKSEYTQPTPIQCQGVPVAM-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 320
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 321 ---LEP-GD--------GPI-AVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 367
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +++ V DEADRM + G +++SI
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI 424
Score = 51 (23.0 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 423 SIASHVRPDRQTLLFSAT------FRKKIE 446
Score = 49 (22.3 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
G ++F T A +++ LK ++ LH M Q R K+ S+
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISE 543
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 250 (93.1 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 67/180 (37%), Positives = 103/180 (57%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D+IG A+TGSGKT AF P++ +++++E
Sbjct: 266 LMHQIRKSEYTQPTPIQCQGVPVAM-SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-- 322
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE G+ G + A+I+ PTREL Q+ K K N+R V + GG S
Sbjct: 323 ---LEP-GD--------GPI-AVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 369
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L +++ V DEADRM + G +++SI
Sbjct: 370 EQAKALQEGAEIVVCTPGRLIDHV---KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSI 426
Score = 51 (23.0 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 425 SIASHVRPDRQTLLFSAT------FRKKIE 448
Score = 49 (22.3 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531
G ++F T A +++ LK ++ LH M Q R K+ S+
Sbjct: 501 GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISE 545
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 250 (93.1 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 69/185 (37%), Positives = 98/185 (52%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LMK I F PTPIQ P A +G+D+IG A+TGSGKTLAF LP + + A
Sbjct: 395 LMKEIIGAGFPNPTPIQSQAWPIAL-KGRDIIGLAKTGSGKTLAFLLPSIVHI-----NA 448
Query: 246 AKML-EDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMST 304
+L ED G P L++ PTRELALQ+ + + + GG S
Sbjct: 449 QPVLREDDG-------PI----VLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASK 497
Query: 305 EKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 364
Q LK E+V+ TPGRL +++ G+ +L +++ VLDEADRM++ G +++
Sbjct: 498 HTQVAALKKGVEIVIATPGRLIDILESGKTNL---RRVTYLVLDEADRMLDMGFEPQIRK 554
Query: 365 IIDML 369
II +
Sbjct: 555 IISQI 559
Score = 54 (24.1 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 456 VLANKLEESFIE-CKE-EDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDV 513
+ AN +E C++ E K+ L ++ SV + IVF + + + +L+ G
Sbjct: 597 ITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKS 656
Query: 514 WTLHAQMQQRARLKLFSQ 531
+H Q R + SQ
Sbjct: 657 IGIHGNKSQPERDFVLSQ 674
Score = 42 (19.8 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 394 RKKRQTLVFSAT 405
R RQTL+FSAT
Sbjct: 560 RPDRQTLMFSAT 571
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 250 (93.1 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 69/180 (38%), Positives = 101/180 (56%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
LM I + ++ +PTPIQ +P A G+D IG A+TGSGKT AF PI+ +++++E
Sbjct: 268 LMHQIRKSEYTQPTPIQCQGVPIAL-SGRDAIGIAKTGSGKTAAFIWPILVHIMDQKE-- 324
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE GE G + A+I+ PTREL Q+ K K +R V + GG S
Sbjct: 325 ---LEP-GE--------GPI-AVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMW 371
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
+Q + L+ E+VV TPGRL + + +K L ++F V DEADRM + G +++SI
Sbjct: 372 EQAKALQEGAEIVVCTPGRLIDHV---KKKATSLQRVTFLVFDEADRMFDMGFEYQVRSI 428
Score = 51 (23.0 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 388 TVSSLQRKKRQTLVFSATIALSADFRKKLK 417
+++S R RQTL+FSAT FRKK++
Sbjct: 427 SIASHVRPDRQTLLFSAT------FRKKIE 450
Score = 48 (22.0 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 471 EDKDAYLYY-ILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLF 529
+DK +L ++ G +VF T A +++ L G + LH M Q R K+
Sbjct: 486 QDKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVI 545
Query: 530 S 530
+
Sbjct: 546 A 546
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 228 (85.3 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 59/142 (41%), Positives = 83/142 (58%)
Query: 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254
F PT IQ A P G+DVIG AETGSGKTLAFGLP ++++L+ L+ K +
Sbjct: 93 FASPTAIQSATWPLL-FAGRDVIGIAETGSGKTLAFGLPCLKKVLD--------LKTKQK 143
Query: 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKAR 314
A ++I+PTRELA+Q+ D L A+ ++++V I GG+ ++Q LK+
Sbjct: 144 SCRPLA-------VVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSA 196
Query: 315 PEVVVGTPGRLWELMSGGEKHL 336
VVV TPGRL +L + G L
Sbjct: 197 A-VVVATPGRLKDLQNDGSLDL 217
Score = 200 (75.5 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 42/106 (39%), Positives = 71/106 (66%)
Query: 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326
A++I+PTRELA+Q+ D L A+ ++++V I GG+ ++Q LK+ VVV TPGRL
Sbjct: 149 AVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLK 207
Query: 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372
+L + G ++L + + VLDEADRM++ G ++++ II +P++
Sbjct: 208 DLQNDGS---LDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVS 250
Score = 67 (28.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 458 ANKLEESFIEC-KEEDKDAYLYYILSVHGQG---RTIVFCTSIAALRHISSLLKILGIDV 513
AN + +E K +K+ L IL+ H +G + + FC + LL+ G V
Sbjct: 291 ANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKV 350
Query: 514 WTLHAQMQQRARLK 527
+H + Q+ R +
Sbjct: 351 AGIHGDLSQQERFR 364
Score = 42 (19.8 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 389 VSSLQRKKRQTLVFSAT 405
+S + KRQT++F+AT
Sbjct: 244 ISPMPVSKRQTVMFTAT 260
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 260 (96.6 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 67/193 (34%), Positives = 108/193 (55%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
E+ L L +I R ++ +PTP+Q+ IP A G+D++ A+TGSGKT AF PI+ +
Sbjct: 150 EIDLGEALNLNIQRCKYVKPTPVQRNAIPILA-AGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 239 LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPI 298
++++ + +G Y P A+I++PTRELA Q+ D + + V+VV
Sbjct: 209 MKDQH----IERPRGVRGV-Y-PL----AVILSPTRELACQIHDEARKFSYQTGVKVVVA 258
Query: 299 VGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 358
GG +Q R L+ +++V TPGRL +L+ G V L + F LDEADRM++ G
Sbjct: 259 YGGTPVNQQIRELERGVDILVATPGRLNDLLERGR---VSLQMVRFLALDEADRMLDMGF 315
Query: 359 FRELQSIIDMLPM 371
+++ I+ + M
Sbjct: 316 EPQIRKIVQQMDM 328
Score = 42 (19.8 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 470 EEDKDAYLYYILSVH----GQGR---TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522
+ DK ++L +L QG+ T+VF + + + L I G T+H Q
Sbjct: 382 DSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQ 441
Query: 523 RAR 525
+ R
Sbjct: 442 QER 444
Score = 37 (18.1 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 397 RQTLVFSAT 405
RQT++FSAT
Sbjct: 334 RQTMLFSAT 342
>UNIPROTKB|Q5ZHZ0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334
EMBL:AJ720994 IPI:IPI00585240 ProteinModelPortal:Q5ZHZ0 SMR:Q5ZHZ0
Uniprot:Q5ZHZ0
Length = 428
Score = 162 (62.1 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
Identities = 41/111 (36%), Positives = 63/111 (56%)
Query: 263 GHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVG 320
G + L++ TRELA Q++ + +K + +V+V GG++ +K E +LK P +VVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVG 171
Query: 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
TPGR+ L K L L + F+LDE D+M+E R ++Q I M P
Sbjct: 172 TPGRILALARN--KSL-NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Score = 111 (44.1 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
+ A +G + ++ V + +S + + L P L+++I F+ P+ +Q CIP A
Sbjct: 20 NAAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA 79
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
G DV+ A++G GKT F L +Q+L
Sbjct: 80 I-LGMDVLCQAKSGMGKTAVFVLATLQQL 107
Score = 71 (30.1 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ +++ K+ +K+ L+ +L V + ++F S+ ++ LL +H M
Sbjct: 262 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 321
Query: 521 QQRARLKLFSQMITWIRK 538
Q RL + Q + R+
Sbjct: 322 PQEERLSRYQQFKDFQRR 339
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 260 (96.6 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 62/199 (31%), Positives = 115/199 (57%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
++++++ + ++M +I ++ PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 181 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 239
Query: 235 MQRLLEERE-KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
+ ++ + +A K +++ G + K + +L++ PTRELA+Q+ + + + V
Sbjct: 240 LSQIYTDGPGEALKAVKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 296
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
R + GG +Q R L+ ++V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 297 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 353
Query: 354 IENGHFRELQSII--DMLP 370
++ G +++ I+ D +P
Sbjct: 354 LDMGFEPQIRRIVEQDTMP 372
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 257 (95.5 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 69/201 (34%), Positives = 109/201 (54%)
Query: 165 VNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGS 224
V+ ++ W+ L ++ I +L++ +PT IQ +P G+DV+G A+TGS
Sbjct: 368 VSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIM-SGRDVVGVAKTGS 426
Query: 225 GKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 284
GKT+AF LP M R ++++E +++G P G LI+TPTRELA+Q+
Sbjct: 427 GKTMAFLLP-MFRHIKDQEPVK---DNEG-------PIG----LILTPTRELAVQIFRDC 471
Query: 285 KGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344
K K + +R V GG + Q LK E+VV T GR+ +L++ + +V L ++
Sbjct: 472 KPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTY 531
Query: 345 FVLDEADRMIENGHFRELQSI 365
VLDEADRM + G ++ I
Sbjct: 532 IVLDEADRMFDMGFEPQVMKI 552
Score = 52 (23.4 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 380 SEQTQNC-VTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLS- 437
+E+ +NC + ++ + Q V I + FR+K+K G K + G +E L
Sbjct: 733 TEEQENCAIGIAKALEQSGQP-VPEKLIEMRKAFREKVKAGKAKDQSGFGG-KGLEKLDK 790
Query: 438 ERAGMR 443
ER R
Sbjct: 791 EREAAR 796
Score = 44 (20.5 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 394 RKKRQTLVFSATIA--LSADFRKKLKH 418
R RQT++FSAT+ + A +K LK+
Sbjct: 557 RPDRQTVLFSATMPKIMDALVKKVLKN 583
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 237 (88.5 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 69/217 (31%), Positives = 112/217 (51%)
Query: 158 DDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVI 217
D +EE E E F+ EL L L++++ + ++PT IQ++ IP +GKDV+
Sbjct: 32 DREQEEEQKEEEAPKSFE---ELGLDSRLIRALTKKGIEKPTLIQQSAIPYIL-EGKDVV 87
Query: 218 GAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELA 277
A+TGSGKTLA+ LP++Q+L + +K +K AP A I+ P+REL
Sbjct: 88 ARAKTGSGKTLAYLLPLLQKLFSA-DSVSK---------KKLAPS----AFILVPSRELC 133
Query: 278 LQVTDHLKGVAK--GINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG--E 333
QV + + + + ++ V + MS L PE++V TP + + + G E
Sbjct: 134 QQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLE 193
Query: 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
V +LS VLDEAD ++ G+ L+S+ ++P
Sbjct: 194 PTAVS-ESLSILVLDEADLLLSYGYEDNLRSVTSIIP 229
Score = 64 (27.6 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 16/74 (21%), Positives = 37/74 (50%)
Query: 459 NKLEESFIECKEEDKDAYLYYILSVHG-QGRTIVFCTSIAALRHISSLLKILGIDVWTLH 517
+ +++ +I C +DK ++ +L + Q + ++F +I + L+ GI L+
Sbjct: 273 SNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILN 332
Query: 518 AQMQQRARLKLFSQ 531
++ Q +RL + Q
Sbjct: 333 GELPQNSRLHILEQ 346
Score = 41 (19.5 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 385 NCVTVSSLQRKKRQTLVFSATIALSADFRKKL 416
N +V+S+ ++ Q L+ SAT + + KKL
Sbjct: 220 NLRSVTSIIPRRCQCLLMSATTSSDVEKLKKL 251
>FB|FBgn0014189 [details] [associations]
symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
Length = 424
Score = 157 (60.3 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 42/106 (39%), Positives = 60/106 (56%)
Query: 268 LIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPEVVVGTPGRL 325
L++ TRELA Q++ + +K + V+V GGM+ +K E LK+ P +VVGTPGR+
Sbjct: 114 LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRI 173
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFR-ELQSIIDMLP 370
L+ K L L L FVLDE D+M+E R ++Q I P
Sbjct: 174 LALIRN--KKL-NLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTP 216
Score = 111 (44.1 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 150 SVAVSNGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA 209
+ AV N +A ++ V +S + + L P ++++I F+ P+ +Q CIP A
Sbjct: 18 TTAVEN--QEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQA 75
Query: 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
G D++ A++G GKT F L +Q+L
Sbjct: 76 V-LGMDILCQAKSGMGKTAVFVLATLQQL 103
Score = 76 (31.8 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
L++ ++ KE +K+ L+ +L V + ++F S+ +S LL +H M
Sbjct: 259 LQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGM 318
Query: 521 QQRARLKLFSQ 531
Q RL + Q
Sbjct: 319 TQEERLNRYQQ 329
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 175 (66.7 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325
+ALI+ PTRELA Q+ + + +N++ +GG + L+ P++VVGTPGR+
Sbjct: 95 QALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRI 154
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372
+++ ++ +++ + F+LDEAD M+ G ++ I +LP +
Sbjct: 155 HDMI---QRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQS 198
Score = 124 (48.7 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 157 PDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQGKD 215
PD E N EI+ FD+ + L P L++ +Y F+ P+ IQ +A +P +G D
Sbjct: 12 PDSQIES--NYDEITDSFDS---MELKPELLRGVYAYGFERPSAIQQRAILPIV--KGND 64
Query: 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKML 249
VI A++G+GKT F + +Q+L + KA + L
Sbjct: 65 VIAQAQSGTGKTATFSISALQKL-DPNVKACQAL 97
Score = 40 (19.1 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 488 RTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525
+ ++FC + + ++ L V +H M+Q R
Sbjct: 266 QAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQR 303
>UNIPROTKB|J3QR64 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000581384
Uniprot:J3QR64
Length = 214
Score = 145 (56.1 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQG 213
NGPD E E V E+ + D+++++ L L++ IY F++P+ IQ +A +P +G
Sbjct: 23 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 80
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRL-LEEREKAAKMLEDKGEEAEK 258
DVI A++G+GKT F + I+Q++ L+ + A +L E A++
Sbjct: 81 YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ 126
Score = 140 (54.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 31/105 (29%), Positives = 58/105 (55%)
Query: 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGR 324
+AL++ PTRELA Q+ + + + +GG + + ++L P ++VGTPGR
Sbjct: 113 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 172
Query: 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 369
++++++ ++L + + FVLDEAD M+ G ++ I L
Sbjct: 173 VFDMLN--RRYLSPKY-IKMFVLDEADEMLSRGFKDQIYDIFQKL 214
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 259 (96.2 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 61/199 (30%), Positives = 116/199 (58%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
++++++ + ++M +I ++ PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 178 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 236
Query: 235 MQRLLEERE-KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
+ ++ + +A + +++ G+ + K + +L++ PTRELA+Q+ + + + V
Sbjct: 237 LSQIYTDGPGEALRAMKENGKYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 293
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
R + GG +Q R L+ ++V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 294 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 350
Query: 354 IENGHFRELQSII--DMLP 370
++ G +++ I+ D +P
Sbjct: 351 LDMGFEPQIRRIVEQDTMP 369
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 259 (96.2 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 61/199 (30%), Positives = 116/199 (58%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
++++++ + ++M +I ++ PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 237
Query: 235 MQRLLEERE-KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
+ ++ + +A + +++ G+ + K + +L++ PTRELA+Q+ + + + V
Sbjct: 238 LSQIYTDGPGEALRAMKENGKYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 294
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
R + GG +Q R L+ ++V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 295 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 351
Query: 354 IENGHFRELQSII--DMLP 370
++ G +++ I+ D +P
Sbjct: 352 LDMGFEPQIRRIVEQDTMP 370
WARNING: HSPs involving 590 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 547 469 0.00098 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 840
No. of states in DFA: 616 (65 KB)
Total size of DFA: 265 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.71u 0.13s 41.84t Elapsed: 00:00:02
Total cpu time: 41.77u 0.13s 41.90t Elapsed: 00:00:02
Start: Mon May 20 16:06:08 2013 End: Mon May 20 16:06:10 2013
WARNINGS ISSUED: 2