BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009003
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 136/269 (50%), Gaps = 50/269 (18%)
Query: 150 SVAVS-NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPA 208
S+ VS GPD + ++ + ++EL+L P + +I ++ PTPIQK IPA
Sbjct: 6 SIPVSVTGPDYSATNVI---------ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPA 56
Query: 209 AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRAL 268
+D++ A+TGSGKT AF +PI+ L+ +D ++ +Y+ + + L
Sbjct: 57 ILEH-RDIMACAQTGSGKTAAFLIPIINHLV---------CQDLNQQ--RYSKTAYPKCL 104
Query: 269 IITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL 328
I+ PTRELA+Q+ + + +R + GG T Q R ++ ++V TPGRL +
Sbjct: 105 ILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDF 164
Query: 329 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVT 388
+ EK+ + L + VLDEADRM++ G +++ II+ M +G N
Sbjct: 165 I---EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN------------ 209
Query: 389 VSSLQRKKRQTLVFSATIA-----LSADF 412
RQTL+FSAT L+ADF
Sbjct: 210 --------RQTLMFSATFPKEIQKLAADF 230
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 54/269 (20%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGK 214
+ P +A + +V E E T + +L + +L ++ +L + +PT IQ IP A QG+
Sbjct: 27 DSPTEASQPIVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGR 81
Query: 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274
D+IG AETGSGKT AF LPI+ LLE ++ L AL++TPTR
Sbjct: 82 DIIGLAETGSGKTGAFALPILNALLETPQR--------------------LFALVLTPTR 121
Query: 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK 334
ELA Q+++ + + I V+ IVGG+ + Q L +P +++ TPGRL + + +
Sbjct: 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG 181
Query: 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQR 394
L L + V+DEADR++ E+ I+ ++P
Sbjct: 182 F--NLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------ 215
Query: 395 KKRQTLVFSATIALSADFRKKLKHGSLKS 423
+ R+T +FSAT+ +KL+ +LK+
Sbjct: 216 RDRKTFLFSATMTKKV---QKLQRAALKN 241
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 126/252 (50%), Gaps = 50/252 (19%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ + L P ++++++ PTPIQ A +P A +GKD+IG A TG+GKTLAF LPI +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAE 61
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
RL +E+ K RAL++TPTRELALQV L VA +++VV
Sbjct: 62 RLAPSQERGRKP-----------------RALVLTPTRELALQVASELTAVAP--HLKVV 102
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG KQ+ L + VV TPGR + + G +++L + VLDEAD M+
Sbjct: 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSM 159
Query: 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKL 416
G E+++++ P RQTL+FSAT+ + K+L
Sbjct: 160 GFEEEVEALLSATP------------------------PSRQTLLFSATL---PSWAKRL 192
Query: 417 KHGSLKSKQSVN 428
+K+ +N
Sbjct: 193 AERYMKNPVLIN 204
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 50/252 (19%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ + L P ++++++ PTPI+ A +P A +GKD+IG A TG+GKTLAF LPI +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAE 61
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296
RL +E+ K RAL++TPTRELALQV L VA +++VV
Sbjct: 62 RLAPSQERGRKP-----------------RALVLTPTRELALQVASELTAVAP--HLKVV 102
Query: 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356
+ GG KQ+ L + VV TPGR + + G +++L + VLDEAD M+
Sbjct: 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSM 159
Query: 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKL 416
G E+++++ P RQTL+FSAT+ + K+L
Sbjct: 160 GFEEEVEALLSATP------------------------PSRQTLLFSATL---PSWAKRL 192
Query: 417 KHGSLKSKQSVN 428
+K+ +N
Sbjct: 193 AERYMKNPVLIN 204
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 162/366 (44%), Gaps = 88/366 (24%)
Query: 172 TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFG 231
E+ +NEL L ++ +I F++PT IQ IP + +++ A TGSGKT +F
Sbjct: 3 VEYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFA 62
Query: 232 LPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI 291
+P+++ + E + A+I+TPTRELA+QV D ++ +
Sbjct: 63 IPLIELVNEN---------------------NGIEAIILTPTRELAIQVADEIESLKGNK 101
Query: 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 351
N+++ I GG + Q + LK +VVGTPGR+ + ++ G + L + +F+LDEAD
Sbjct: 102 NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILDEAD 157
Query: 352 RMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA- 410
+ G ++++ I+ N NK ++ L+FSAT
Sbjct: 158 EXLNXGFIKDVEKIL------NACNKD------------------KRILLFSATXPREIL 193
Query: 411 DFRKKLK--HGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIEC 468
+ KK + +K+K + N +E+S++E
Sbjct: 194 NLAKKYXGDYSFIKAKINAN--------------------------------IEQSYVEV 221
Query: 469 KEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR--- 525
E ++ L +L + + +VFC + + ++S L+ +G +H + Q R
Sbjct: 222 NENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKV 280
Query: 526 LKLFSQ 531
++LF Q
Sbjct: 281 IRLFKQ 286
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 76/364 (20%)
Query: 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229
++T+ + + + L L+ I+ F++P+PIQ+ IP A G+D++ A+ G+GKT A
Sbjct: 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAA 74
Query: 230 FGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPK-GHLRALIITPTRELALQVTDHLKGVA 288
F +P + EK PK ++ALI+ PTRELALQ + ++ +
Sbjct: 75 FVIPTL---------------------EKVKPKLNKIQALIMVPTRELALQTSQVVRTLG 113
Query: 289 KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348
K + + GG + L ++VGTPGR+ +L S + + +L S F++D
Sbjct: 114 KHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLAS---RKVADLSDCSLFIMD 170
Query: 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408
EAD+M+ ++ I+ LP T+ Q+L+FSAT L
Sbjct: 171 EADKMLSRDFKTIIEQILSFLPPTH------------------------QSLLFSATFPL 206
Query: 409 SADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIEC 468
+ +K +K +N +E L+ + G+ A V+
Sbjct: 207 T------VKEFMVKHLHKPYEINLMEELTLK-GITQYYAFVE------------------ 241
Query: 469 KEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKL 528
E K L + S + I+FC S + ++ + LG + HA+M+Q+ R K+
Sbjct: 242 -ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKV 300
Query: 529 FSQM 532
F +
Sbjct: 301 FHEF 304
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 41/242 (16%)
Query: 165 VNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGS 224
V +++ + L +++ ++ + +K PTPIQK IP + G+D++ A+TGS
Sbjct: 46 VTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGS 104
Query: 225 GKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 284
GKT AF LPI+ +LLE+ + LE G + +I++PTRELA+Q+ +
Sbjct: 105 GKTAAFLLPILSKLLEDPHE----LE-----------LGRPQVVIVSPTRELAIQIFNEA 149
Query: 285 KGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344
+ A +++ + GG S Q + VV+ TPGRL + + ++ + F
Sbjct: 150 RKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFV---DRTFITFEDTRF 206
Query: 345 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSA 404
VLDEADRM++ G +++ I+ + M R + QTL+FSA
Sbjct: 207 VVLDEADRMLDMGFSEDMRRIMTHVTM----------------------RPEHQTLMFSA 244
Query: 405 TI 406
T
Sbjct: 245 TF 246
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 160/366 (43%), Gaps = 75/366 (20%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+ + L P L+++I F+ P+ +Q CIP A G DV+ A++G GKT F L +
Sbjct: 8 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATL 66
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVR 294
Q+L G + L++ TRELA Q++ + +K + NV+
Sbjct: 67 QQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 106
Query: 295 VVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDEAD+M
Sbjct: 107 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDEADKM 163
Query: 354 IENGHF-RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412
+E R++Q I M P ++Q ++FSAT++
Sbjct: 164 LEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLS----- 194
Query: 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED 472
K+++ K Q + + D T + + + L++ +++ K+ +
Sbjct: 195 -KEIRPVCRKFMQD----------------PMEIFVDDETKLTL--HGLQQYYVKLKDNE 235
Query: 473 KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQM 532
K+ L+ +L V + ++F S+ ++ LL +H M Q RL + Q
Sbjct: 236 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 295
Query: 533 ITWIRK 538
+ R+
Sbjct: 296 KDFQRR 301
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 159/366 (43%), Gaps = 75/366 (20%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+ + L P L+++I F+ P+ +Q CIP A G DV+ A++G GKT F L +
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATL 67
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVR 294
Q+L G + L++ TRELA Q++ + +K + NV+
Sbjct: 68 QQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 107
Query: 295 VVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDE D+M
Sbjct: 108 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDECDKM 164
Query: 354 IENGHF-RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412
+E R++Q I M P ++Q ++FSAT++
Sbjct: 165 LEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLS----- 195
Query: 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED 472
K+++ K Q + + D T + + + L++ +++ K+ +
Sbjct: 196 -KEIRPVCRKFMQD----------------PMEIFVDDETKLTL--HGLQQYYVKLKDNE 236
Query: 473 KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQM 532
K+ L+ +L V + ++F S+ ++ LL +H M Q RL + Q
Sbjct: 237 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296
Query: 533 ITWIRK 538
+ R+
Sbjct: 297 KDFQRR 302
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 159/366 (43%), Gaps = 75/366 (20%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
+ + L P L+++I F+ P+ +Q CIP A G DV+ A++G GKT F L +
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATL 67
Query: 236 QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVR 294
Q+L G + L++ TRELA Q++ + +K + NV+
Sbjct: 68 QQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 107
Query: 295 VVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDE D+M
Sbjct: 108 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDECDKM 164
Query: 354 IENGHF-RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412
+E R++Q I M P ++Q ++FSAT++
Sbjct: 165 LEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLS----- 195
Query: 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED 472
K+++ K Q + + D T + + + L++ +++ K+ +
Sbjct: 196 -KEIRPVCRKFMQD----------------PMEIFVDDETKLTL--HGLQQYYVKLKDNE 236
Query: 473 KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQM 532
K+ L+ +L V + ++F S+ ++ LL +H M Q RL + Q
Sbjct: 237 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296
Query: 533 ITWIRK 538
+ R+
Sbjct: 297 KDFQRR 302
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
++++++ + ++M +I ++ PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 73
Query: 235 MQRLLEERE-KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
+ ++ + +A + +++ G + K + +L++ PTRELA+Q+ + + + V
Sbjct: 74 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 130
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
R + GG +Q R L+ ++V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 131 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 187
Query: 354 IENGHFRELQSII--DMLP 370
++ G +++ I+ D +P
Sbjct: 188 LDMGFEPQIRRIVEQDTMP 206
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 59/356 (16%)
Query: 186 LMKSIYRLQFKEPTPIQKACI-PAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
+ K+I R++F TP+Q+ I P + + DVI A+TG+GKT AF +PI Q L+
Sbjct: 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 87
Query: 245 AAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK---GI-NVRVVPIVG 300
K+ + ++A+I+ PTR+LALQ+ +K + G+ V +VG
Sbjct: 88 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 301 GMSTE-KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 136 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 193
Query: 360 RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 419
+L++I +L N+ S+ N +TL+FSAT+ D +KL +
Sbjct: 194 DDLETISGIL------NEKNSKSADNI-----------KTLLFSATL---DDKVQKLANN 233
Query: 420 SLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYY 479
+ K+ + L++++ A R + ++ V++ K S E K
Sbjct: 234 IMNKKECL-FLDTVDKNEPEAHERIDQSV-------VISEKFANSIFAAVEHIKKQ---- 281
Query: 480 ILSVHGQGRTIVFCTSIAALRHISSLLK---ILGIDVWTLHAQMQQRARLKLFSQM 532
I + I+F ++ + S+LK + + H ++ Q R L +
Sbjct: 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 337
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 122/258 (47%), Gaps = 53/258 (20%)
Query: 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGL 232
E +++ L +K + Q++ T IQK I A QGKDV+GAA+TGSGKTLAF +
Sbjct: 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTI-GLALQGKDVLGAAKTGSGKTLAFLV 81
Query: 233 PIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292
P+++ L ++ L LII+PTRELA Q + L+ V K +
Sbjct: 82 PVLEALYR----------------LQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD 125
Query: 293 VRVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGRLWELMSGGEKHLVELHT--LSFFVLDE 349
I+GG + + ER+ ++V TPGRL + M V H L VLDE
Sbjct: 126 FSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMD----ETVSFHATDLQMLVLDE 179
Query: 350 ADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409
ADR+++ G + ++I+ LP KKRQTL+FSAT S
Sbjct: 180 ADRILDMGFADTMNAVIENLP------------------------KKRQTLLFSATQTKS 215
Query: 410 ADFRKKLKHGSLKSKQSV 427
K L SLK+ + V
Sbjct: 216 V---KDLARLSLKNPEYV 230
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 59/356 (16%)
Query: 186 LMKSIYRLQFKEPTPIQKACI-PAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
+ K+I R++F TP+Q+ I P + + DVI A+TG+GKT AF +PI Q L+
Sbjct: 83 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 138
Query: 245 AAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK---GI-NVRVVPIVG 300
K+ + ++A+I+ PTR+LALQ+ +K + G+ V +VG
Sbjct: 139 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 186
Query: 301 GMSTE-KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 187 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 244
Query: 360 RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 419
+L++I +L N+ S+ N +TL+FSAT+ D +KL +
Sbjct: 245 DDLETISGIL------NEKNSKSADNI-----------KTLLFSATL---DDKVQKLANN 284
Query: 420 SLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYY 479
+ K+ + L++++ A R + ++ V++ K S E K
Sbjct: 285 IMNKKECL-FLDTVDKNEPEAHERIDQSV-------VISEKFANSIFAAVEHIKKQ---- 332
Query: 480 ILSVHGQGRTIVFCTSIAALRHISSLLK---ILGIDVWTLHAQMQQRARLKLFSQM 532
I + I+F ++ + S+LK + + H ++ Q R L +
Sbjct: 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 388
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 59/356 (16%)
Query: 186 LMKSIYRLQFKEPTPIQKACI-PAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREK 244
+ K+I R++F TP+Q+ I P + + DVI A+TG+GKT AF +PI Q L+
Sbjct: 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 87
Query: 245 AAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK---GI-NVRVVPIVG 300
K+ + ++A+I+ PTR+LALQ+ +K + G+ V +VG
Sbjct: 88 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 301 GMSTE-KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 136 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 193
Query: 360 RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 419
+L++I +L N+ S+ N +TL+FSAT+ D +KL +
Sbjct: 194 DDLETISGIL------NEKNSKSADNI-----------KTLLFSATL---DDKVQKLANN 233
Query: 420 SLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYY 479
+ K+ + L++++ A R + ++ V++ K S E K
Sbjct: 234 IMNKKECL-FLDTVDKNEPEAHERIDQSV-------VISEKFANSIFAAVEHIKKQ---- 281
Query: 480 ILSVHGQGRTIVFCTSIAALRHISSLLK---ILGIDVWTLHAQMQQRARLKLFSQM 532
I + I+F ++ + S+LK + + H ++ Q R L +
Sbjct: 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 337
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 166/356 (46%), Gaps = 77/356 (21%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPI 234
+++EL L P L+K IY ++F++P+ IQ+ +P H +++I +++G+GKT AF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294
+ R+ E +P+ A+ + P+RELA Q + ++ + K +
Sbjct: 66 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
IV S EK +++ +V+VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 106 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 158
Query: 355 ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414
+ +G +Q C+ V K Q ++FSAT AD +
Sbjct: 159 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATF---ADAVR 192
Query: 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-DK 473
+ +K+ V N++E ++ N VD +++ +++CK E DK
Sbjct: 193 QY------AKKIVPNANTLE-------LQTNEVNVD---------AIKQLYMDCKNEADK 230
Query: 474 DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLF 529
L + V G +I+F + + LK G +V LH +Q + R +L
Sbjct: 231 FDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 286
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 166/356 (46%), Gaps = 77/356 (21%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPI 234
+++EL L P L+K IY ++F++P+ IQ+ +P H +++I +++G+GKT AF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294
+ R+ E +P+ A+ + P+RELA Q + ++ + K +
Sbjct: 66 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
IV S EK +++ +V+VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 106 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 158
Query: 355 ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414
+ +G +Q C+ V K Q ++FSAT AD +
Sbjct: 159 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATF---ADAVR 192
Query: 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-DK 473
+ +K+ V N++E ++ N VD +++ +++CK E DK
Sbjct: 193 QY------AKKIVPNANTLE-------LQTNEVNVD---------AIKQLYMDCKNEADK 230
Query: 474 DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLF 529
L + + G +I+F + + LK G +V LH +Q + R +L
Sbjct: 231 FDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 286
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 155 NGPDDAEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPI-QKACIPAAAHQG 213
NGPD E E V E+ + D+++++ L L++ IY F++P+ I Q+A +P +G
Sbjct: 20 NGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KG 77
Query: 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273
DVI A++G+GKT F + I+Q+ +E KA + AL++ PT
Sbjct: 78 YDVIAQAQSGTGKTATFAISILQQ-IELDLKATQ-------------------ALVLAPT 117
Query: 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGRLWELMSGG 332
RELA Q+ + + + +GG + + ++L P ++VGTPGR++++++
Sbjct: 118 RELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN-- 175
Query: 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 369
+ + + FVLDEAD M+ G ++ I L
Sbjct: 176 -RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 211
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 27/209 (12%)
Query: 165 VNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGS 224
V + +S + + L P L+++I F+ P+ +Q CIP A G DV+ A++G
Sbjct: 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGM 62
Query: 225 GKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 284
GKT F L +Q+L G + L++ TRELA Q++
Sbjct: 63 GKTAVFVLATLQQL--------------------EPVTGQVSVLVMCHTRELAFQISKEY 102
Query: 285 KGVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTL 342
+ +K + NV+V GG+S +K E +LK P +VVGTPGR+ L + L +
Sbjct: 103 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHI 159
Query: 343 SFFVLDEADRMIENGHF-RELQSIIDMLP 370
F+LDE D+M+E R++Q I M P
Sbjct: 160 KHFILDECDKMLEQLDMRRDVQEIFRMTP 188
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 115/215 (53%), Gaps = 33/215 (15%)
Query: 165 VNEAEISTEFDA----WNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQGKDVIGA 219
+ E++I T +D ++++ L L++ ++ F+EP+ IQ +A +P +G DV+
Sbjct: 8 IEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII--EGHDVLAQ 65
Query: 220 AETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQ 279
A++G+GKT F + +QR+ + AP+ AL++ PTRELALQ
Sbjct: 66 AQSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELALQ 105
Query: 280 VTDHLKGVAKGINVRVVPIVGGMS-TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE 338
+ + +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFR 160
Query: 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 161 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 195
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 31/179 (17%)
Query: 188 KSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAK 247
++I + FK T +Q IP QGK+V+ A+TGSGKT A+ +PI++
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL---------- 55
Query: 248 MLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ 307
+++L++TPTREL QV H++ + + ++ +V + GGM + Q
Sbjct: 56 ----------------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQ 99
Query: 308 ERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366
++ ++VV TPGRL +L S G +++L + ++DEAD M E G +++ I+
Sbjct: 100 INRVR-NADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADLMFEMGFIDDIKIIL 154
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 114/213 (53%), Gaps = 33/213 (15%)
Query: 167 EAEISTEFDA----WNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQGKDVIGAAE 221
E++I T +D ++++ L L++ ++ F+EP+ IQ +A +P +G DV+ A+
Sbjct: 2 ESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII--EGHDVLAQAQ 59
Query: 222 TGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVT 281
+G+GKT F + +QR+ + AP+ AL++ PTRELALQ+
Sbjct: 60 SGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELALQIQ 99
Query: 282 DHLKGVAKGINVRVVPIVGGMS-TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELH 340
+ +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 100 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFRTD 154
Query: 341 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 111/238 (46%), Gaps = 48/238 (20%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
+M I R F EPT IQ P A G D++G A+TGSGKTL++ LP + + +
Sbjct: 40 VMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ---- 94
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE +G+ G + L++ PTRELA QV + ++ I GG
Sbjct: 95 -PFLE-RGD--------GPI-CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 143
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
Q R L+ E+ + TPGRL + + G+ + L ++ VLDEADRM++ G +++ I
Sbjct: 144 PQIRDLERGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRKI 200
Query: 366 IDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA-----LSADFRKKLKH 418
+D + R RQTL++SAT L+ DF K H
Sbjct: 201 VDQI------------------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIH 234
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 111/238 (46%), Gaps = 48/238 (20%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
+M I R F EPT IQ P A G D++G A+TGSGKTL++ LP + + +
Sbjct: 54 VMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ---- 108
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE 305
LE +G+ G + L++ PTRELA QV + ++ I GG
Sbjct: 109 -PFLE-RGD--------GPI-CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 157
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365
Q R L+ E+ + TPGRL + + G+ + L ++ VLDEADRM++ G +++ I
Sbjct: 158 PQIRDLERGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRKI 214
Query: 366 IDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA-----LSADFRKKLKH 418
+D + R RQTL++SAT L+ DF K H
Sbjct: 215 VDQI------------------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIH 248
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 34/224 (15%)
Query: 154 SNGPDDAEEELV--NEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAA 210
S G D EE + N ++ +FD ++ L L++ ++ F+EP+ IQ +A +P
Sbjct: 1 SEGITDIEESQIQTNYQKVVYKFD---DMELDEQLLRGVFGYGFEEPSAIQQRAIMPII- 56
Query: 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270
+G DV+ A++G+GKT F + +QR+ + AP+ AL++
Sbjct: 57 -EGHDVLAQAQSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALML 95
Query: 271 TPTRELALQVTDHLKGVAKGINVRVVPIVGGMS-TEKQERLLKARPEVVVGTPGRLWELM 329
PTRELALQ+ + +A ++++V +GG S E E L A ++VVGTPGR+++ +
Sbjct: 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI 153
Query: 330 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
++ + F+LDEAD M+ +G ++ I +LP T
Sbjct: 154 ---QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 29/212 (13%)
Query: 160 AEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGA 219
E E E +++ FD + L L++ IY F++P+ IQ+ I +G+DVI
Sbjct: 25 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 80
Query: 220 AETGSGKTLAFGLPIMQRL-LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 81 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 119
Query: 279 QVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE 338
Q+ L + +NV+ +GG + + R L VV GTPGR+++++ + +
Sbjct: 120 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 176
Query: 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ VLDEAD M+ G ++ + LP
Sbjct: 177 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 208
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 29/212 (13%)
Query: 160 AEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGA 219
E E E +++ FD + L L++ IY F++P+ IQ+ I +G+DVI
Sbjct: 26 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 81
Query: 220 AETGSGKTLAFGLPIMQRL-LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 82 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 120
Query: 279 QVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE 338
Q+ L + +NV+ +GG + + R L VV GTPGR+++++ + +
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 177
Query: 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ VLDEAD M+ G ++ + LP
Sbjct: 178 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 29/212 (13%)
Query: 160 AEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGA 219
E E E +++ FD + L L++ IY F++P+ IQ+ I +G+DVI
Sbjct: 26 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 81
Query: 220 AETGSGKTLAFGLPIMQRL-LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 82 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 120
Query: 279 QVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE 338
Q+ L + +NV+ +GG + + R L VV GTPGR+++++ + +
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 177
Query: 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ VLDEAD M+ G ++ + LP
Sbjct: 178 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 52/244 (21%)
Query: 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245
L+ I+ + +++P+PIQ+ IP A G+D++ A+ G+GK+ A+ +P+++RL
Sbjct: 14 LLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERL------- 65
Query: 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMST 304
K +++A++I PTRELALQV+ V+K + +V+ GG +
Sbjct: 66 -------------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL 112
Query: 305 EKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 364
L VV+ TPGR+ +L+ G + ++ + VLDEAD+++ + ++
Sbjct: 113 RDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVLDEADKLLSQDFVQIMED 169
Query: 365 IIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSK 424
II LP K RQ L++SAT LS +K + L+
Sbjct: 170 IILTLP------------------------KNRQILLYSATFPLSV---QKFMNSHLEKP 202
Query: 425 QSVN 428
+N
Sbjct: 203 YEIN 206
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 29/198 (14%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
D ++++ L L++ IY F++P+ IQ +A IP +G DVI A++G+GKT F +
Sbjct: 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI--KGYDVIAQAQSGTGKTATFAIS 87
Query: 234 IMQRL-LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292
I+Q+L +E +E +AL++ PTRELA Q+ + + +
Sbjct: 88 ILQQLEIEFKET---------------------QALVLAPTRELAQQIQKVILALGDYMG 126
Query: 293 VRVVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 351
+GG + + + L+A P +VVGTPGR++++++ + + + FVLDEAD
Sbjct: 127 ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLN---RRYLSPKWIKMFVLDEAD 183
Query: 352 RMIENGHFRELQSIIDML 369
M+ G ++ I L
Sbjct: 184 EMLSRGFKDQIYEIFQKL 201
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 29/212 (13%)
Query: 160 AEEELVNEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGA 219
E E E +++ FD + L L++ IY F++P+ IQ+ I +G+DVI
Sbjct: 4 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 59
Query: 220 AETGSGKTLAFGLPIMQRL-LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 60 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 98
Query: 279 QVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVE 338
Q+ L + +NV+ +GG + + R L VV GTPGR+++++ + +
Sbjct: 99 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 155
Query: 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370
+ VLDEAD M+ G ++ + LP
Sbjct: 156 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 187
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 31/214 (14%)
Query: 165 VNEAEISTEFDA----WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAA 220
+ E++I T +D +++ L L++ ++ F+EP+ IQ+ I +G DV+ A
Sbjct: 7 IEESQIQTNYDKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPII-EGHDVLAQA 65
Query: 221 ETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQV 280
++G+GKT F + +QR+ + + K AP+ AL + PTRELALQ+
Sbjct: 66 QSGTGKTGTFSIAALQRI----DTSVK------------APQ----ALXLAPTRELALQI 105
Query: 281 TDHLKGVAKGINVRVVPIVGGMS-TEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVEL 339
+ +A +++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 106 QKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFRT 160
Query: 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373
+ F+LDEAD + +G ++ I +LP T
Sbjct: 161 DKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTT 194
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 56/236 (23%)
Query: 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQ 236
+ P ++++I L+F +PT IQ+ IP A +G+ +G ++TG+GKT A+ LPI +
Sbjct: 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESXVGQSQTGTGKTHAYLLPIXE 64
Query: 237 RLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK------G 290
++ ER ++A+I PTRELA Q+ + K
Sbjct: 65 KIKPER--------------------AEVQAVITAPTRELATQIYHETLKITKFCPKDRX 104
Query: 291 INVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350
I R ++GG +K L +P +V+GTPGR+ + + + +++HT V+DEA
Sbjct: 105 IVARC--LIGGTDKQKALEKLNVQPHIVIGTPGRINDFI---REQALDVHTAHILVVDEA 159
Query: 351 DRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
D ++ G ++ I P K Q LVFSATI
Sbjct: 160 DLXLDXGFITDVDQIAARXP------------------------KDLQXLVFSATI 191
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 24/186 (12%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
E +++ L+++I F+ PTPIQ IP H G++++ +A TGSGKTLAF +PI+ +L
Sbjct: 33 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH-GRELLASAPTGSGKTLAFSIPILMQL 91
Query: 239 LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPI 298
K +KG RALII+PTRELA Q+ L +++G R+ I
Sbjct: 92 --------KQPANKG-----------FRALIISPTRELASQIHRELIKISEGTGFRIHMI 132
Query: 299 -VGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 357
++ +K + +++V TP RL L+ ++L ++ + V+DE+D++ E+G
Sbjct: 133 HKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG-IDLASVEWLVVDESDKLFEDG 191
Query: 358 H--FRE 361
FR+
Sbjct: 192 KTGFRD 197
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 51/233 (21%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPI 234
+++EL L P L+K IY ++F++P+ IQ+ +P H +++I +++G+GKT AF L +
Sbjct: 23 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 82
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294
+ R+ E +P+ A+ + P+RELA Q + ++ + K +
Sbjct: 83 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 122
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
IV S EK +++ +V+VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 123 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 175
Query: 355 ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407
+ +G +Q C+ V K Q ++FSAT A
Sbjct: 176 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATFA 205
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 26/196 (13%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
++ + L L++ IY F++P+ IQ+ I +G+DVI +++G+GKT F + ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSVSVL 60
Query: 236 QRL-LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294
Q L ++ RE +ALI+ PTRELA+QV L + +NV+
Sbjct: 61 QCLDIQVRET---------------------QALILAPTRELAVQVQKGLLALGDYMNVQ 99
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
+GG + + R L VV GTPGR+++++ + + + VLDEAD M+
Sbjct: 100 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLRTRAIKMLVLDEADEML 156
Query: 355 ENGHFRELQSIIDMLP 370
G ++ + LP
Sbjct: 157 NKGFKEQIYDVYRYLP 172
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 102/197 (51%), Gaps = 27/197 (13%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
D+++++ L L++ IY F++P+ IQ +A +P +G DVI A++G+GKT F +
Sbjct: 14 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KGYDVIAQAQSGTGKTATFAIS 71
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
I+Q+ +E KA + AL++ PTRELA Q+ + + +
Sbjct: 72 ILQQ-IELDLKATQ-------------------ALVLAPTRELAQQIQKVVMALGDYMGA 111
Query: 294 RVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352
+GG + + ++L P ++VGTPGR++++++ + + + FVLDEAD
Sbjct: 112 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN---RRYLSPKYIKMFVLDEADE 168
Query: 353 MIENGHFRELQSIIDML 369
M+ G ++ I L
Sbjct: 169 MLSRGFKDQIYDIFQKL 185
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 26/196 (13%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM 235
++ + L L++ IY F++P+ IQ+ I +G+DVI +++G+GKT F + ++
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSVSVL 60
Query: 236 QRL-LEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294
Q L ++ RE +ALI+ PTRELA+QV L + +NV+
Sbjct: 61 QCLDIQVRET---------------------QALILAPTRELAVQVQKGLLALGDYMNVQ 99
Query: 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354
+GG + + R L VV GTPGR+++++ + + + VLDEAD M+
Sbjct: 100 SHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLRTRAIKMLVLDEADEML 156
Query: 355 ENGHFRELQSIIDMLP 370
G ++ + LP
Sbjct: 157 NKGFKEQIYDVYRYLP 172
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 101/197 (51%), Gaps = 27/197 (13%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAAAHQGKDVIGAAETGSGKTLAFGLP 233
D+++++ L L++ IY F+ P+ IQ +A +P G DVI A++G+G T F +
Sbjct: 15 DSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIX--GYDVIAQAQSGTGXTATFAIS 72
Query: 234 IMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293
I+Q++ E + A +AL++ PTRELA Q+ + + +
Sbjct: 73 ILQQI--ELDLXAT------------------QALVLAPTRELAQQIQXVVMALGDYMGA 112
Query: 294 RVVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352
+GG + + + L+ P ++VGTPGR++++++ ++L + + FVLDEAD
Sbjct: 113 SCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRVFDMLN--RRYLSPXY-IXMFVLDEADE 169
Query: 353 MIENGHFRELQSIIDML 369
M+ G ++ I L
Sbjct: 170 MLSRGFXDQIYDIFQXL 186
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 43/219 (19%)
Query: 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAA 246
+K+I + F T IQ I +G+D++ AA+TGSGKTLAF +P ++ +++ R
Sbjct: 66 LKAIKEMGFTNMTEIQHKSI-RPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---- 120
Query: 247 KMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEK 306
+ P+ LI++PTRELA+Q LK + I+GG +
Sbjct: 121 ------------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSA 168
Query: 307 QERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366
+ + L ++V TPGRL + M + + L V+DEADR+++ G EL+ II
Sbjct: 169 EAQKLGNGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQII 226
Query: 367 DMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSAT 405
+LP +RQT++FSAT
Sbjct: 227 KLLP------------------------TRRQTMLFSAT 241
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 24/182 (13%)
Query: 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPI 234
DA+ + +P L+KSI R+ +PTPIQ P QG D+I A+TG+GKTL++ +P
Sbjct: 23 DAFQQ---YPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMP- 77
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKGVAKGINV 293
L+ + E+ G L++TPTRELAL V + K KG+
Sbjct: 78 ----------GFIHLDSQPISREQRNGPG---MLVLTPTRELALHVEAECSKYSYKGL-- 122
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
+ + I GG + Q + ++++ TPGRL +L V L ++++ V+DEAD+M
Sbjct: 123 KSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLRSITYLVIDEADKM 179
Query: 354 IE 355
++
Sbjct: 180 LD 181
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA-AHQGKDVIGAAETGSGKTLAFGLPI 234
++ ELRL P L++ +Y + F P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 63 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NV 293
+ ++ E A KY + L ++PT ELALQ ++ + K +
Sbjct: 123 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 162
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 163 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 217
Query: 354 I-ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
I GH + I MLP +NC Q L+FSAT
Sbjct: 218 IATQGHQDQSIRIQRMLP-------------RNC-----------QMLLFSATF 247
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA-AHQGKDVIGAAETGSGKTLAFGLPI 234
++ ELRL P L++ +Y + F P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NV 293
+ ++ E A KY + L ++PT ELALQ ++ + K +
Sbjct: 153 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 193 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 247
Query: 354 IEN-GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
I GH + I MLP +NC Q L+FSAT
Sbjct: 248 IATQGHQDQSIRIQRMLP-------------RNC-----------QMLLFSATF 277
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA-AHQGKDVIGAAETGSGKTLAFGLPI 234
++ ELRL P L++ +Y + F P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 42 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 101
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NV 293
+ ++ E A KY + L ++PT ELALQ ++ + K +
Sbjct: 102 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 141
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 142 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 196
Query: 354 IEN-GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
I GH + I MLP +NC Q L+FSAT
Sbjct: 197 IATQGHQDQSIRIQRMLP-------------RNC-----------QMLLFSATF 226
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA-AHQGKDVIGAAETGSGKTLAFGLPI 234
++ ELRL P L++ +Y + F P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NV 293
+ ++ E A KY + L ++PT ELALQ ++ + K +
Sbjct: 86 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 126 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 180
Query: 354 IEN-GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
I GH + I MLP +NC Q L+FSAT
Sbjct: 181 IATQGHQDQSIRIQRMLP-------------RNC-----------QMLLFSATF 210
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA-AHQGKDVIGAAETGSGKTLAFGLPI 234
++ ELRL P L++ +Y + F P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NV 293
+ ++ E A KY + L ++PT ELALQ ++ + K +
Sbjct: 153 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 193 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 247
Query: 354 IEN-GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
I GH + I MLP +NC Q L+FSAT
Sbjct: 248 IATQGHQDQSIRIQRMLP-------------RNC-----------QMLLFSATF 277
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA-AHQGKDVIGAAETGSGKTLAFGLPI 234
++ ELRL P L++ +Y + F P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 235 MQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NV 293
+ ++ E A KY + L ++PT ELALQ ++ + K +
Sbjct: 86 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 126 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 180
Query: 354 I-ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406
I GH + I MLP +NC Q L+FSAT
Sbjct: 181 IATQGHQDQSIRIQRMLP-------------RNC-----------QMLLFSATF 210
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 30/170 (17%)
Query: 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254
F+ P+P+Q IP G D+I A++G+GKT F + L+ E
Sbjct: 44 FERPSPVQLKAIPLG-RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST--------- 93
Query: 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVA---KGINVRVVPIVGGMSTEKQERLL 311
+ LI+ PTRE+A+Q+ + + +G+ V +GG + + L
Sbjct: 94 -----------QILILAPTREIAVQIHSVITAIGIKMEGLECHV--FIGGTPLSQDKTRL 140
Query: 312 KARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 361
K + + VG+PGR+ +L+ E + ++ F+LDEAD+++E G F+E
Sbjct: 141 K-KCHIAVGSPGRIKQLI---ELDYLNPGSIRLFILDEADKLLEEGSFQE 186
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 128/298 (42%), Gaps = 83/298 (27%)
Query: 201 IQKACIPAA-AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKY 259
IQ+ +P ++ +++IG +++G+GKT AF L ++ R+ +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV------------------DAS 186
Query: 260 APKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVV 319
PK A+ + P+RELA Q+ D + + K V+ + + + K ++V+
Sbjct: 187 VPKPQ--AICLAPSRELARQIMDVVTEMGKYTEVKTAFGI----KDSVPKGAKIDAQIVI 240
Query: 320 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQ 379
GTPG + +LM ++ ++ + FVLDEAD M++ +G
Sbjct: 241 GTPGTVMDLM---KRRQLDARDIKVFVLDEADNMLD--------------------QQGL 277
Query: 380 SEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSER 439
+Q+ + + L + Q ++FSAT + +E +ER
Sbjct: 278 GDQS---MRIKHLLPRNTQIVLFSATFS-----------------------ERVEKYAER 311
Query: 440 AGMRANVAIVDLTNMCVLANKLEESFIECKEEDKD----AYLYYILSVHGQGRTIVFC 493
AN + + V +++ +++C+ E+ LY +L++ G++I+FC
Sbjct: 312 FAPNANEIRLKTEELSV--EGIKQLYMDCQSEEHKYNVLVELYGLLTI---GQSIIFC 364
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAA 246
+S+Y+ +F PIQ + +V A TGSGKT+ I++ LL+ E
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-- 973
Query: 247 KMLEDKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKGVAKGINVRVVPIVGGMSTE 305
R + ITP LA QV D + +N +VV + G ST+
Sbjct: 974 -------------------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1014
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350
+ L + +++ TP + W+++S K + ++ FV+DE
Sbjct: 1015 LK---LLGKGNIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEV 1055
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAA 246
+S+Y+ +F PIQ + +V A TGSGKT+ I++ LL+ E
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-- 973
Query: 247 KMLEDKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKGVAKGINVRVVPIVGGMSTE 305
R + ITP LA QV D + +N +VV + G ST+
Sbjct: 974 -------------------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1014
Query: 306 KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350
+ L + +++ TP + W+++S K + ++ FV+DE
Sbjct: 1015 LK---LLGKGNIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEV 1055
>pdb|2QYT|A Chain A, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Porphyromonas Gingivalis W83
Length = 317
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 36/170 (21%)
Query: 287 VAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346
+A+G ++ + GG+ R ARP V P E+ T+ + +
Sbjct: 43 IARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA--------------EVGTVDYIL 88
Query: 347 LDEADRMIENGHFRELQSII----DMLPMTNGSNKGQSEQT--------QNCVTVSSLQR 394
D E G E++ I +LP+ NG++ + +T + CV +S+ R
Sbjct: 89 FCTKDYDXERG-VAEIRPXIGQNTKILPLLNGADIAERXRTYLPDTVVWKGCVYISA--R 145
Query: 395 KKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRA 444
K L I L AD R+ GS +Q+ + + E L+ AG+RA
Sbjct: 146 KSAPGL-----ITLEAD-RELFYFGSGLPEQTDDEVRLAELLTA-AGIRA 188
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQM 520
+E + I+ +EE+K + L +L I+FC + + ++ L LG +H M
Sbjct: 10 IEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGM 69
Query: 521 QQRARLKLFSQM 532
Q R + ++
Sbjct: 70 IQEDRFDVMNEF 81
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 310 LLKARPEVVVGTPGRL---WELMSGGEKHLVELHTL---------SFFVLDEADRMIEN 356
+L A E+ + PGR L+SGGEK LV L L F+VLDE D +++
Sbjct: 198 ILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLF 529
++I+FC S + ++ + LG + +HA+M+Q R ++F
Sbjct: 45 NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVF 87
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 178 NELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQR 237
+ELR+ + ++ + P Q + + +GK+ + + T SGKTL + ++ R
Sbjct: 4 DELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR 63
Query: 238 LLEEREKAAKMLEDKGEEAEKY 259
+L + KA ++ K EK+
Sbjct: 64 ILTQGGKAVYIVPLKALAEEKF 85
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 179 ELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238
+L+L +++ I + K+ P Q + +G ++ + TGSGKTL + I+ L
Sbjct: 12 DLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL 71
Query: 239 LEEREKAAKMLEDKGEEAEKY 259
L+ KA + + EKY
Sbjct: 72 LKNGGKAIYVTPLRALTNEKY 92
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIID 367
W++ + KH ++L+ F++D+A++ + N + R ++ +ID
Sbjct: 58 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLID 98
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPM 371
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+
Sbjct: 286 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL 332
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 326 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPM 371
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+
Sbjct: 286 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,289,750
Number of Sequences: 62578
Number of extensions: 504450
Number of successful extensions: 1725
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 72
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)