Query 009003
Match_columns 547
No_of_seqs 453 out of 2482
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 19:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 9.6E-55 2.1E-59 419.0 25.1 304 172-547 58-365 (476)
2 KOG0338 ATP-dependent RNA heli 100.0 9.7E-54 2.1E-58 423.7 21.2 305 174-547 180-491 (691)
3 KOG0347 RNA helicase [RNA proc 100.0 3.4E-53 7.4E-58 423.2 17.9 336 171-536 177-513 (731)
4 KOG0331 ATP-dependent RNA heli 100.0 1E-51 2.2E-56 423.6 26.4 306 176-547 92-406 (519)
5 COG0513 SrmB Superfamily II DN 100.0 1.6E-49 3.5E-54 423.7 34.8 293 175-538 29-325 (513)
6 KOG0343 RNA Helicase [RNA proc 100.0 6.8E-50 1.5E-54 399.6 25.2 296 172-534 66-363 (758)
7 KOG0342 ATP-dependent RNA heli 100.0 1.9E-47 4.1E-52 379.1 24.8 297 174-537 81-381 (543)
8 KOG0340 ATP-dependent RNA heli 100.0 1.2E-47 2.5E-52 366.0 21.8 297 174-538 6-306 (442)
9 PTZ00110 helicase; Provisional 100.0 4.4E-46 9.6E-51 401.0 35.0 303 169-538 124-429 (545)
10 PRK04837 ATP-dependent RNA hel 100.0 1.4E-45 3E-50 388.5 35.2 300 175-538 8-307 (423)
11 KOG0328 Predicted ATP-dependen 100.0 9.5E-47 2.1E-51 349.2 21.0 294 173-539 25-319 (400)
12 KOG0333 U5 snRNP-like RNA heli 100.0 3.9E-46 8.5E-51 371.1 26.5 341 167-547 237-582 (673)
13 KOG0346 RNA helicase [RNA proc 100.0 1.4E-46 3.1E-51 367.1 22.1 298 175-538 19-320 (569)
14 KOG0345 ATP-dependent RNA heli 100.0 1.1E-45 2.3E-50 364.1 28.2 294 175-534 4-305 (567)
15 PRK10590 ATP-dependent RNA hel 100.0 4.8E-45 1E-49 387.1 34.3 296 176-538 2-297 (456)
16 PRK11776 ATP-dependent RNA hel 100.0 9.9E-45 2.2E-49 386.1 35.2 290 175-538 4-294 (460)
17 PRK04537 ATP-dependent RNA hel 100.0 1E-44 2.2E-49 391.7 34.3 301 175-538 9-309 (572)
18 PLN00206 DEAD-box ATP-dependen 100.0 3.5E-44 7.6E-49 385.2 33.9 303 169-538 115-420 (518)
19 PRK11634 ATP-dependent RNA hel 100.0 4.7E-44 1E-48 388.7 35.1 292 174-538 5-297 (629)
20 PRK11192 ATP-dependent RNA hel 100.0 9.7E-44 2.1E-48 376.1 36.0 304 176-547 2-310 (434)
21 KOG0339 ATP-dependent RNA heli 100.0 5.9E-44 1.3E-48 353.7 26.0 302 167-536 215-518 (731)
22 KOG0335 ATP-dependent RNA heli 100.0 3.3E-44 7.1E-49 362.1 21.8 312 169-538 68-389 (482)
23 KOG0326 ATP-dependent RNA heli 100.0 4.4E-45 9.6E-50 343.4 13.1 294 173-540 83-376 (459)
24 PRK01297 ATP-dependent RNA hel 100.0 4.2E-42 9.1E-47 367.0 35.3 301 174-538 86-387 (475)
25 KOG0348 ATP-dependent RNA heli 100.0 7.6E-43 1.6E-47 348.2 23.5 329 172-535 133-496 (708)
26 KOG0336 ATP-dependent RNA heli 100.0 1.1E-42 2.3E-47 336.8 18.9 312 169-547 213-530 (629)
27 KOG0334 RNA helicase [RNA proc 100.0 3.6E-42 7.9E-47 369.7 21.0 307 168-539 358-666 (997)
28 KOG0337 ATP-dependent RNA heli 100.0 3.9E-42 8.4E-47 334.6 18.0 301 175-547 21-326 (529)
29 PTZ00424 helicase 45; Provisio 100.0 8.7E-40 1.9E-44 343.0 35.5 292 174-538 27-319 (401)
30 KOG0341 DEAD-box protein abstr 100.0 2.8E-42 6.1E-47 331.8 10.7 307 166-538 161-473 (610)
31 KOG0332 ATP-dependent RNA heli 100.0 4.9E-40 1.1E-44 315.6 18.7 301 173-547 88-395 (477)
32 KOG0327 Translation initiation 100.0 1.2E-39 2.5E-44 315.9 19.7 291 173-538 24-315 (397)
33 KOG0350 DEAD-box ATP-dependent 100.0 3.3E-39 7.1E-44 320.2 21.2 313 184-538 146-485 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 2.6E-37 5.6E-42 342.4 29.1 287 181-538 20-331 (742)
35 KOG4284 DEAD box protein [Tran 100.0 4.6E-38 9.9E-43 319.5 17.8 302 172-547 22-337 (980)
36 PRK02362 ski2-like helicase; P 100.0 1E-34 2.3E-39 324.7 28.2 291 176-538 2-331 (737)
37 KOG0344 ATP-dependent RNA heli 100.0 7.5E-35 1.6E-39 296.1 20.9 306 168-538 125-440 (593)
38 PRK00254 ski2-like helicase; P 100.0 5.9E-34 1.3E-38 317.9 29.1 282 176-538 2-323 (720)
39 PRK13767 ATP-dependent helicas 100.0 2E-33 4.4E-38 317.3 28.8 299 182-538 18-342 (876)
40 PLN03137 ATP-dependent DNA hel 100.0 2E-32 4.4E-37 302.0 30.3 275 180-538 442-732 (1195)
41 TIGR00614 recQ_fam ATP-depende 100.0 2.5E-32 5.3E-37 290.8 29.0 262 192-538 6-278 (470)
42 PRK09401 reverse gyrase; Revie 100.0 3.4E-32 7.4E-37 311.2 30.7 288 193-547 77-395 (1176)
43 COG1201 Lhr Lhr-like helicases 100.0 1.5E-32 3.3E-37 297.4 26.2 289 182-538 8-306 (814)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.5E-32 1.2E-36 294.7 29.9 266 193-534 12-323 (844)
45 KOG0329 ATP-dependent RNA heli 100.0 3.6E-33 7.9E-38 255.5 14.6 255 174-500 41-297 (387)
46 PRK11057 ATP-dependent DNA hel 100.0 2.2E-31 4.7E-36 291.0 30.4 269 183-538 10-288 (607)
47 PRK01172 ski2-like helicase; P 100.0 1.3E-31 2.8E-36 297.7 28.6 285 176-538 2-313 (674)
48 TIGR01389 recQ ATP-dependent D 100.0 3E-31 6.5E-36 290.5 28.3 259 193-538 9-276 (591)
49 TIGR01054 rgy reverse gyrase. 100.0 8.8E-31 1.9E-35 300.1 29.4 296 185-547 66-394 (1171)
50 PRK14701 reverse gyrase; Provi 100.0 2.1E-30 4.6E-35 302.3 29.0 299 185-547 67-397 (1638)
51 TIGR00580 mfd transcription-re 100.0 3.2E-29 7E-34 280.5 31.3 268 181-538 435-714 (926)
52 cd00268 DEADc DEAD-box helicas 100.0 8E-29 1.7E-33 235.1 25.3 185 177-407 1-185 (203)
53 PRK10689 transcription-repair 100.0 2.2E-28 4.7E-33 279.5 31.5 265 184-539 588-864 (1147)
54 COG1202 Superfamily II helicas 100.0 5.5E-29 1.2E-33 251.2 20.1 285 175-537 194-491 (830)
55 PRK09751 putative ATP-dependen 100.0 1.4E-28 3E-33 282.5 25.4 278 218-538 1-329 (1490)
56 PRK10917 ATP-dependent DNA hel 100.0 1.7E-27 3.6E-32 263.2 30.4 263 184-538 248-533 (681)
57 KOG0349 Putative DEAD-box RNA 100.0 7.3E-29 1.6E-33 242.3 15.7 320 175-540 2-562 (725)
58 COG1205 Distinct helicase fami 100.0 2.6E-27 5.7E-32 263.6 26.8 290 182-538 55-366 (851)
59 COG1204 Superfamily II helicas 100.0 1.2E-27 2.7E-32 262.7 23.6 283 181-538 15-342 (766)
60 TIGR00643 recG ATP-dependent D 100.0 7.9E-27 1.7E-31 256.2 29.0 267 184-538 223-510 (630)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3E-26 6.5E-31 254.3 28.7 241 209-538 13-264 (819)
62 PRK11664 ATP-dependent RNA hel 99.9 2.8E-26 6E-31 255.1 26.2 240 210-538 17-267 (812)
63 PHA02558 uvsW UvsW helicase; P 99.9 5.7E-26 1.2E-30 243.3 24.6 274 196-538 113-396 (501)
64 PHA02653 RNA helicase NPH-II; 99.9 1.2E-25 2.6E-30 243.9 25.0 256 199-538 166-448 (675)
65 TIGR01587 cas3_core CRISPR-ass 99.9 7.6E-26 1.6E-30 233.7 19.9 249 215-537 1-279 (358)
66 KOG0952 DNA/RNA helicase MER3/ 99.9 5.2E-26 1.1E-30 243.5 18.8 287 192-538 105-424 (1230)
67 COG0514 RecQ Superfamily II DN 99.9 2E-25 4.3E-30 234.1 22.2 264 189-538 8-282 (590)
68 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-25 4.2E-30 205.3 17.6 162 199-407 1-163 (169)
69 TIGR03158 cas3_cyano CRISPR-as 99.9 2.8E-24 6E-29 220.6 26.9 267 201-529 1-317 (357)
70 KOG2340 Uncharacterized conser 99.9 1.3E-25 2.8E-30 224.9 15.8 319 196-535 215-601 (698)
71 PRK12898 secA preprotein trans 99.9 8.1E-24 1.7E-28 226.3 24.5 287 193-535 100-522 (656)
72 PRK13766 Hef nuclease; Provisi 99.9 8.7E-23 1.9E-27 231.2 27.7 164 195-410 13-176 (773)
73 TIGR03714 secA2 accessory Sec 99.9 9.6E-23 2.1E-27 220.5 25.1 324 193-547 67-487 (762)
74 KOG0926 DEAH-box RNA helicase 99.9 2.5E-24 5.5E-29 224.2 12.1 255 195-537 242-526 (1172)
75 PRK09200 preprotein translocas 99.9 5.6E-22 1.2E-26 216.6 24.5 318 193-547 75-491 (790)
76 PRK11131 ATP-dependent RNA hel 99.9 6.2E-22 1.3E-26 224.3 25.1 237 204-531 80-334 (1294)
77 TIGR00963 secA preprotein tran 99.9 7.9E-22 1.7E-26 212.1 24.2 134 193-355 53-190 (745)
78 TIGR00603 rad25 DNA repair hel 99.9 1.6E-22 3.4E-27 218.8 18.5 282 197-547 255-557 (732)
79 KOG0351 ATP-dependent DNA heli 99.9 3.5E-22 7.5E-27 221.3 19.8 269 186-537 253-536 (941)
80 KOG0352 ATP-dependent DNA heli 99.9 3.3E-22 7.2E-27 195.8 16.6 268 185-537 6-306 (641)
81 PRK13104 secA preprotein trans 99.9 1.8E-21 3.8E-26 212.2 23.9 131 193-354 79-215 (896)
82 COG1111 MPH1 ERCC4-like helica 99.9 1.2E-20 2.7E-25 189.9 25.0 167 197-415 15-181 (542)
83 KOG0354 DEAD-box like helicase 99.9 1.4E-20 3E-25 200.1 22.2 167 195-412 60-227 (746)
84 KOG0951 RNA helicase BRR2, DEA 99.9 4E-21 8.7E-26 208.6 17.5 286 193-538 305-635 (1674)
85 PF06862 DUF1253: Protein of u 99.9 7.7E-20 1.7E-24 187.0 24.3 263 254-538 27-352 (442)
86 PRK12899 secA preprotein trans 99.9 5.8E-21 1.3E-25 207.8 15.4 147 179-354 66-228 (970)
87 PRK05580 primosome assembly pr 99.9 2E-19 4.3E-24 198.4 27.6 122 197-354 144-271 (679)
88 PRK09694 helicase Cas3; Provis 99.8 1.7E-19 3.7E-24 200.7 26.1 283 196-532 285-613 (878)
89 TIGR01967 DEAH_box_HrpA ATP-de 99.8 7.1E-20 1.5E-24 208.4 22.1 252 193-532 60-328 (1283)
90 COG1061 SSL2 DNA or RNA helica 99.8 7.3E-20 1.6E-24 192.6 19.1 277 197-547 36-347 (442)
91 PRK12904 preprotein translocas 99.8 5E-19 1.1E-23 193.1 25.0 287 193-538 78-480 (830)
92 KOG0947 Cytoplasmic exosomal R 99.8 3E-20 6.4E-25 197.6 14.7 167 191-422 292-460 (1248)
93 COG4581 Superfamily II RNA hel 99.8 1.9E-19 4.2E-24 198.5 21.0 173 189-420 112-284 (1041)
94 COG1200 RecG RecG-like helicas 99.8 1.4E-18 3.1E-23 182.2 22.5 269 180-538 245-535 (677)
95 KOG0353 ATP-dependent DNA heli 99.8 3.8E-19 8.2E-24 171.9 15.6 275 179-538 75-369 (695)
96 smart00487 DEXDc DEAD-like hel 99.8 3.6E-18 7.8E-23 160.1 19.9 168 192-408 3-172 (201)
97 PRK13107 preprotein translocas 99.8 1E-17 2.2E-22 182.5 20.4 133 193-354 79-215 (908)
98 TIGR00595 priA primosomal prot 99.8 2.4E-17 5.2E-22 175.8 22.8 130 217-407 1-140 (505)
99 COG1643 HrpA HrpA-like helicas 99.8 2.8E-17 6E-22 180.5 21.5 239 206-535 58-312 (845)
100 PRK04914 ATP-dependent helicas 99.8 2.7E-17 6E-22 184.3 21.4 77 471-547 478-561 (956)
101 KOG0948 Nuclear exosomal RNA h 99.8 6.3E-18 1.4E-22 176.0 14.4 279 197-538 129-474 (1041)
102 PRK11448 hsdR type I restricti 99.7 1.7E-16 3.6E-21 181.8 24.0 134 197-353 413-552 (1123)
103 KOG0922 DEAH-box RNA helicase 99.7 6.9E-17 1.5E-21 168.1 18.7 240 209-538 62-318 (674)
104 COG1197 Mfd Transcription-repa 99.7 1.6E-15 3.4E-20 168.0 27.2 267 181-538 578-857 (1139)
105 TIGR01407 dinG_rel DnaQ family 99.7 1.8E-15 3.9E-20 172.0 28.2 98 182-303 231-334 (850)
106 KOG0950 DNA polymerase theta/e 99.7 6.7E-17 1.5E-21 173.5 13.1 303 180-538 206-550 (1008)
107 COG1110 Reverse gyrase [DNA re 99.7 2.1E-15 4.6E-20 162.9 22.1 283 193-543 79-390 (1187)
108 COG1203 CRISPR-associated heli 99.7 1.5E-15 3.2E-20 169.4 19.8 274 197-536 195-490 (733)
109 PLN03142 Probable chromatin-re 99.7 7.9E-15 1.7E-19 165.2 25.6 295 197-546 169-554 (1033)
110 cd00046 DEXDc DEAD-like helica 99.7 2.4E-15 5.3E-20 132.6 17.2 144 214-406 1-144 (144)
111 KOG0923 mRNA splicing factor A 99.7 8.9E-16 1.9E-20 158.3 15.4 246 202-537 270-533 (902)
112 COG4098 comFA Superfamily II D 99.6 4.3E-14 9.2E-19 136.1 22.5 248 197-539 97-358 (441)
113 PRK12906 secA preprotein trans 99.6 4.2E-14 9.1E-19 154.2 22.0 133 193-354 77-213 (796)
114 PRK07246 bifunctional ATP-depe 99.6 9E-14 2E-18 156.2 24.5 89 191-304 240-332 (820)
115 PF04851 ResIII: Type III rest 99.6 2.2E-14 4.7E-19 133.3 13.8 156 197-407 3-183 (184)
116 KOG0924 mRNA splicing factor A 99.6 3E-14 6.5E-19 147.4 14.7 238 211-538 369-625 (1042)
117 KOG0920 ATP-dependent RNA heli 99.5 2E-13 4.4E-18 149.8 19.6 275 200-538 176-472 (924)
118 TIGR00348 hsdR type I site-spe 99.5 4.1E-13 9E-18 148.4 19.1 155 197-408 238-404 (667)
119 KOG1123 RNA polymerase II tran 99.5 1.2E-13 2.7E-18 138.5 8.0 282 196-547 301-604 (776)
120 KOG0385 Chromatin remodeling c 99.4 8.8E-12 1.9E-16 131.3 20.9 292 197-546 167-554 (971)
121 COG4096 HsdR Type I site-speci 99.4 6E-12 1.3E-16 134.6 18.2 141 196-370 164-310 (875)
122 COG0556 UvrB Helicase subunit 99.4 1.8E-11 3.9E-16 124.6 17.1 71 472-542 430-502 (663)
123 KOG0925 mRNA splicing factor A 99.4 1.5E-11 3.3E-16 123.4 15.6 252 174-517 24-293 (699)
124 PRK12326 preprotein translocas 99.3 2.7E-10 5.9E-15 122.3 24.0 133 193-354 75-211 (764)
125 TIGR03117 cas_csf4 CRISPR-asso 99.3 2E-11 4.2E-16 131.9 15.3 74 209-303 12-88 (636)
126 KOG0387 Transcription-coupled 99.3 1.6E-10 3.6E-15 122.4 19.6 285 196-535 204-596 (923)
127 KOG0951 RNA helicase BRR2, DEA 99.3 1.7E-11 3.6E-16 134.9 10.5 156 197-412 1143-1305(1674)
128 KOG0949 Predicted helicase, DE 99.3 1.6E-11 3.4E-16 132.2 9.6 171 197-417 511-682 (1330)
129 PRK13103 secA preprotein trans 99.2 3E-10 6.5E-15 124.8 18.8 133 193-354 79-215 (913)
130 PF07652 Flavi_DEAD: Flaviviru 99.2 5.6E-11 1.2E-15 102.7 8.4 105 212-353 3-107 (148)
131 KOG0390 DNA repair protein, SN 99.2 2.8E-09 6E-14 115.8 21.6 149 197-369 238-402 (776)
132 PF00176 SNF2_N: SNF2 family N 99.2 8E-11 1.7E-15 118.3 9.2 161 201-407 1-173 (299)
133 TIGR00631 uvrb excinuclease AB 99.1 2.7E-09 5.8E-14 117.1 20.0 70 471-540 425-496 (655)
134 CHL00122 secA preprotein trans 99.1 4.8E-09 1E-13 115.0 21.0 133 193-354 73-209 (870)
135 PRK12902 secA preprotein trans 99.1 4.2E-09 9.2E-14 115.2 20.2 132 193-354 82-218 (939)
136 smart00489 DEXDc3 DEAD-like he 99.1 8.5E-10 1.8E-14 109.9 13.8 76 194-287 6-84 (289)
137 smart00488 DEXDc2 DEAD-like he 99.1 8.5E-10 1.8E-14 109.9 13.8 76 194-287 6-84 (289)
138 COG1198 PriA Primosomal protei 99.1 4.1E-09 9E-14 115.0 18.4 151 196-407 197-360 (730)
139 KOG0952 DNA/RNA helicase MER3/ 99.1 1E-11 2.2E-16 134.8 -2.3 248 195-506 925-1173(1230)
140 PRK08074 bifunctional ATP-depe 99.1 2.4E-09 5.1E-14 122.9 16.2 87 194-303 255-347 (928)
141 KOG0392 SNF2 family DNA-depend 99.1 5.6E-09 1.2E-13 115.3 17.8 149 197-369 975-1126(1549)
142 KOG1000 Chromatin remodeling p 99.0 1.5E-08 3.3E-13 102.5 18.4 277 196-535 197-541 (689)
143 PRK12903 secA preprotein trans 99.0 2.5E-08 5.3E-13 109.0 19.7 133 193-354 75-211 (925)
144 KOG1002 Nucleotide excision re 99.0 2.4E-08 5.3E-13 100.9 18.0 131 197-355 184-330 (791)
145 KOG0384 Chromodomain-helicase 99.0 4.6E-09 9.9E-14 116.3 13.1 144 196-370 369-524 (1373)
146 KOG0389 SNF2 family DNA-depend 98.9 1.2E-08 2.7E-13 108.4 13.2 76 471-546 760-843 (941)
147 PRK12900 secA preprotein trans 98.9 3.5E-08 7.7E-13 109.2 15.5 130 197-354 138-271 (1025)
148 PRK05298 excinuclease ABC subu 98.9 4.9E-08 1.1E-12 108.0 16.6 69 472-540 430-500 (652)
149 PRK11747 dinG ATP-dependent DN 98.9 5.6E-08 1.2E-12 108.3 16.6 66 194-282 23-96 (697)
150 COG4889 Predicted helicase [Ge 98.8 3.6E-09 7.9E-14 113.0 5.9 141 185-354 149-317 (1518)
151 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.6E-07 3.6E-12 91.3 16.4 133 193-354 74-210 (266)
152 TIGR02562 cas3_yersinia CRISPR 98.7 3.1E-07 6.7E-12 102.5 17.5 165 197-407 408-635 (1110)
153 PF02399 Herpes_ori_bp: Origin 98.7 6.6E-07 1.4E-11 97.4 16.6 244 213-523 49-319 (824)
154 COG1199 DinG Rad3-related DNA 98.6 9.4E-08 2E-12 106.8 10.0 74 192-287 10-86 (654)
155 TIGR00604 rad3 DNA repair heli 98.6 3E-07 6.6E-12 103.1 11.3 75 193-287 6-83 (705)
156 PRK14873 primosome assembly pr 98.6 1E-06 2.2E-11 96.8 14.8 126 222-407 169-304 (665)
157 KOG0391 SNF2 family DNA-depend 98.5 1.2E-06 2.5E-11 96.7 14.6 140 197-366 615-761 (1958)
158 PRK15483 type III restriction- 98.5 1E-06 2.2E-11 98.6 14.6 120 214-354 60-214 (986)
159 KOG0953 Mitochondrial RNA heli 98.4 1.4E-06 3.1E-11 89.8 10.4 213 213-534 191-405 (700)
160 KOG4439 RNA polymerase II tran 98.4 1.3E-06 2.9E-11 92.1 9.9 155 197-369 325-489 (901)
161 COG0610 Type I site-specific r 98.3 1.2E-05 2.6E-10 92.3 15.7 142 214-409 274-416 (962)
162 KOG0386 Chromatin remodeling c 98.3 2.1E-06 4.5E-11 94.0 8.1 65 470-534 708-774 (1157)
163 PF13604 AAA_30: AAA domain; P 98.2 9.6E-06 2.1E-10 76.2 11.3 116 197-370 1-118 (196)
164 PF13086 AAA_11: AAA domain; P 98.2 3.7E-06 8E-11 81.0 8.6 73 198-286 2-75 (236)
165 KOG4150 Predicted ATP-dependen 98.2 4.9E-06 1.1E-10 85.8 9.4 282 190-536 279-583 (1034)
166 KOG0388 SNF2 family DNA-depend 98.1 1.1E-05 2.3E-10 85.3 8.3 142 197-367 567-720 (1185)
167 KOG1132 Helicase of the DEAD s 98.0 3.5E-05 7.6E-10 83.9 11.6 93 197-289 21-135 (945)
168 COG0553 HepA Superfamily II DN 98.0 0.00024 5.1E-09 82.3 18.8 136 196-354 337-485 (866)
169 cd00079 HELICc Helicase superf 98.0 6.3E-05 1.4E-09 65.2 10.1 66 472-537 12-79 (131)
170 PF02562 PhoH: PhoH-like prote 97.9 1.9E-05 4.1E-10 73.9 6.7 59 196-276 3-61 (205)
171 KOG1803 DNA helicase [Replicat 97.9 3.6E-05 7.9E-10 80.7 9.1 66 197-285 185-250 (649)
172 KOG1802 RNA helicase nonsense 97.9 6.1E-05 1.3E-09 79.5 9.9 88 186-300 399-486 (935)
173 TIGR00376 DNA helicase, putati 97.8 0.00019 4.1E-09 79.3 13.1 69 196-287 156-224 (637)
174 PF13872 AAA_34: P-loop contai 97.8 0.00017 3.7E-09 70.7 10.8 173 177-407 23-221 (303)
175 PF09848 DUF2075: Uncharacteri 97.8 0.00014 3E-09 75.0 10.6 108 215-368 3-117 (352)
176 TIGR01447 recD exodeoxyribonuc 97.8 0.00042 9.2E-09 75.6 14.3 135 199-370 147-284 (586)
177 PRK10536 hypothetical protein; 97.7 0.00073 1.6E-08 65.2 13.6 45 193-238 55-99 (262)
178 PRK10875 recD exonuclease V su 97.7 0.00041 8.9E-09 75.9 13.4 134 199-370 154-290 (615)
179 PF12340 DUF3638: Protein of u 97.7 0.00025 5.4E-09 67.0 9.7 136 197-355 23-186 (229)
180 TIGR01448 recD_rel helicase, p 97.7 0.0007 1.5E-08 76.0 14.9 67 193-282 320-386 (720)
181 KOG0921 Dosage compensation co 97.7 0.00035 7.5E-09 76.2 11.6 109 212-354 392-506 (1282)
182 KOG1015 Transcription regulato 97.7 0.001 2.2E-08 73.0 15.1 101 265-369 729-847 (1567)
183 PF13245 AAA_19: Part of AAA d 97.6 0.00044 9.6E-09 54.0 8.1 61 205-284 2-62 (76)
184 PRK12901 secA preprotein trans 97.5 0.00014 3.1E-09 81.4 6.3 130 197-354 169-303 (1112)
185 KOG1133 Helicase of the DEAD s 97.5 0.002 4.3E-08 68.8 14.3 45 197-241 15-62 (821)
186 TIGR02768 TraA_Ti Ti-type conj 97.5 0.002 4.4E-08 72.6 15.1 76 182-281 338-413 (744)
187 COG3587 Restriction endonuclea 97.4 0.00086 1.9E-08 73.2 9.9 89 214-325 75-171 (985)
188 PF05970 PIF1: PIF1-like helic 97.4 0.00045 9.7E-09 71.4 7.5 124 198-372 2-132 (364)
189 PRK13826 Dtr system oriT relax 97.3 0.0051 1.1E-07 71.1 15.3 77 181-281 366-442 (1102)
190 KOG1805 DNA replication helica 97.3 0.0011 2.4E-08 73.2 9.3 137 180-354 656-809 (1100)
191 PF13401 AAA_22: AAA domain; P 97.2 0.0021 4.6E-08 55.7 9.3 19 212-230 3-21 (131)
192 PRK13889 conjugal transfer rel 97.2 0.0041 8.8E-08 71.4 13.1 64 193-280 343-406 (988)
193 PRK12723 flagellar biosynthesi 97.2 0.0052 1.1E-07 63.6 12.6 19 213-231 174-192 (388)
194 PF14617 CMS1: U3-containing 9 97.1 0.0012 2.6E-08 63.7 6.9 88 261-352 123-212 (252)
195 COG1875 NYN ribonuclease and A 97.0 0.0081 1.8E-07 60.0 11.8 65 193-277 224-289 (436)
196 PRK14722 flhF flagellar biosyn 97.0 0.0035 7.6E-08 64.3 9.1 21 212-232 136-156 (374)
197 PRK08181 transposase; Validate 96.9 0.0061 1.3E-07 59.9 10.4 31 199-229 89-122 (269)
198 PRK04296 thymidine kinase; Pro 96.9 0.003 6.6E-08 58.9 7.9 18 213-230 2-19 (190)
199 PRK11889 flhF flagellar biosyn 96.9 0.037 8E-07 56.8 15.9 19 214-232 242-260 (436)
200 PF00580 UvrD-helicase: UvrD/R 96.9 0.0028 6E-08 63.9 7.8 126 198-352 1-126 (315)
201 COG3421 Uncharacterized protei 96.8 0.0075 1.6E-07 63.6 10.2 44 311-354 78-125 (812)
202 COG0653 SecA Preprotein transl 96.7 0.0037 8E-08 69.3 7.8 133 193-354 77-213 (822)
203 KOG0298 DEAD box-containing he 96.7 0.0036 7.7E-08 71.2 7.2 150 212-370 373-539 (1394)
204 COG1419 FlhF Flagellar GTP-bin 96.7 0.022 4.7E-07 58.4 12.0 106 213-368 203-309 (407)
205 TIGR02760 TraI_TIGR conjugativ 96.7 0.15 3.1E-06 63.7 21.3 65 197-284 429-494 (1960)
206 PRK14974 cell division protein 96.5 0.045 9.8E-07 55.6 13.5 44 340-407 221-265 (336)
207 PRK06526 transposase; Provisio 96.5 0.0078 1.7E-07 58.8 7.6 21 211-231 96-116 (254)
208 PF05127 Helicase_RecD: Helica 96.4 0.002 4.4E-08 58.8 2.6 111 217-366 1-111 (177)
209 cd00009 AAA The AAA+ (ATPases 96.4 0.05 1.1E-06 47.3 11.4 17 213-229 19-35 (151)
210 KOG1131 RNA polymerase II tran 96.3 0.057 1.2E-06 56.3 12.7 45 193-237 12-59 (755)
211 KOG1001 Helicase-like transcri 96.2 0.02 4.4E-07 63.2 9.7 115 214-354 153-267 (674)
212 TIGR01075 uvrD DNA helicase II 96.2 0.015 3.2E-07 65.9 8.8 71 196-288 3-73 (715)
213 cd01120 RecA-like_NTPases RecA 96.2 0.077 1.7E-06 47.3 11.9 17 339-355 83-99 (165)
214 PRK05703 flhF flagellar biosyn 96.2 0.053 1.2E-06 57.1 12.2 20 212-231 220-239 (424)
215 PRK06893 DNA replication initi 96.2 0.013 2.9E-07 56.3 7.1 30 340-369 90-120 (229)
216 PRK05642 DNA replication initi 96.2 0.013 2.8E-07 56.6 7.0 31 340-370 96-127 (234)
217 PF00308 Bac_DnaA: Bacterial d 96.2 0.063 1.4E-06 51.3 11.5 31 339-369 95-126 (219)
218 COG1444 Predicted P-loop ATPas 96.1 0.055 1.2E-06 59.9 11.7 186 187-440 204-406 (758)
219 PRK12727 flagellar biosynthesi 96.0 0.34 7.4E-06 51.8 16.9 20 211-230 348-367 (559)
220 PF03354 Terminase_1: Phage Te 96.0 0.028 6E-07 60.4 9.1 137 200-364 1-146 (477)
221 PRK06731 flhF flagellar biosyn 96.0 0.43 9.4E-06 47.0 16.6 21 212-232 74-94 (270)
222 PRK12377 putative replication 95.9 0.074 1.6E-06 51.7 10.9 17 213-229 101-117 (248)
223 PRK00149 dnaA chromosomal repl 95.9 0.045 9.7E-07 58.4 10.1 16 214-229 149-164 (450)
224 PTZ00112 origin recognition co 95.9 0.25 5.4E-06 55.6 15.5 28 340-368 868-895 (1164)
225 PRK11773 uvrD DNA-dependent he 95.8 0.027 5.8E-07 63.8 8.5 71 196-288 8-78 (721)
226 PRK14087 dnaA chromosomal repl 95.8 0.072 1.6E-06 56.7 11.2 31 339-369 204-235 (450)
227 PHA03368 DNA packaging termina 95.8 0.1 2.2E-06 56.8 12.1 134 213-407 254-391 (738)
228 KOG0989 Replication factor C, 95.8 0.029 6.4E-07 54.9 7.4 33 337-370 125-157 (346)
229 PRK08116 hypothetical protein; 95.8 0.089 1.9E-06 51.9 11.0 24 214-238 115-138 (268)
230 smart00382 AAA ATPases associa 95.8 0.03 6.5E-07 48.3 7.0 18 213-230 2-19 (148)
231 COG1484 DnaC DNA replication p 95.8 0.036 7.7E-07 54.2 8.0 51 211-285 103-153 (254)
232 PRK08903 DnaA regulatory inact 95.7 0.05 1.1E-06 52.2 8.9 18 212-229 41-58 (227)
233 PRK13833 conjugal transfer pro 95.7 0.035 7.5E-07 56.0 7.9 65 190-277 123-187 (323)
234 PHA02533 17 large terminase pr 95.7 0.16 3.5E-06 55.0 13.3 122 197-354 59-182 (534)
235 PRK11054 helD DNA helicase IV; 95.6 0.047 1E-06 61.0 9.3 75 193-289 192-266 (684)
236 PRK13894 conjugal transfer ATP 95.6 0.035 7.7E-07 56.1 7.6 68 187-277 124-191 (319)
237 PRK08727 hypothetical protein; 95.6 0.041 8.9E-07 53.1 7.8 16 214-229 42-57 (233)
238 PRK06921 hypothetical protein; 95.6 0.056 1.2E-06 53.2 8.8 18 212-229 116-133 (266)
239 PRK10919 ATP-dependent DNA hel 95.5 0.03 6.5E-07 62.7 7.3 70 197-288 2-71 (672)
240 TIGR00362 DnaA chromosomal rep 95.5 0.07 1.5E-06 56.1 9.6 16 214-229 137-152 (405)
241 PRK14721 flhF flagellar biosyn 95.5 0.31 6.6E-06 51.0 14.1 20 212-231 190-209 (420)
242 PRK11331 5-methylcytosine-spec 95.5 0.049 1.1E-06 57.0 8.1 32 198-230 180-211 (459)
243 cd01124 KaiC KaiC is a circadi 95.5 0.11 2.4E-06 47.9 9.9 48 216-287 2-49 (187)
244 TIGR01074 rep ATP-dependent DN 95.5 0.077 1.7E-06 59.7 10.4 70 198-289 2-71 (664)
245 PRK13709 conjugal transfer nic 95.4 0.19 4E-06 61.4 13.7 66 197-281 967-1033(1747)
246 TIGR03499 FlhF flagellar biosy 95.4 0.056 1.2E-06 53.8 8.0 19 213-231 194-212 (282)
247 PRK07952 DNA replication prote 95.4 0.18 3.8E-06 49.0 11.1 24 214-238 100-123 (244)
248 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.048 1E-06 52.1 7.3 18 212-229 37-54 (226)
249 PRK08084 DNA replication initi 95.3 0.042 9.1E-07 53.1 6.6 17 213-229 45-61 (235)
250 PRK12402 replication factor C 95.2 0.15 3.2E-06 52.0 10.7 22 209-230 30-53 (337)
251 PRK12726 flagellar biosynthesi 95.2 0.11 2.3E-06 53.3 9.2 20 212-231 205-224 (407)
252 PRK14723 flhF flagellar biosyn 95.1 0.085 1.9E-06 58.9 9.1 20 213-232 185-204 (767)
253 COG2805 PilT Tfp pilus assembl 95.1 0.033 7.3E-07 54.4 5.2 52 170-241 101-152 (353)
254 TIGR01547 phage_term_2 phage t 95.1 0.065 1.4E-06 56.2 7.8 109 215-354 3-114 (396)
255 PF13173 AAA_14: AAA domain 95.1 0.21 4.6E-06 43.1 9.8 27 341-369 61-87 (128)
256 PRK07764 DNA polymerase III su 95.0 0.11 2.4E-06 59.0 9.9 31 339-370 118-148 (824)
257 PF00271 Helicase_C: Helicase 95.0 0.04 8.7E-07 42.9 4.6 35 504-538 1-35 (78)
258 PRK05707 DNA polymerase III su 94.9 0.18 3.9E-06 51.3 10.2 32 198-229 4-38 (328)
259 PRK00411 cdc6 cell division co 94.9 0.14 3.1E-06 53.5 9.9 17 213-229 55-71 (394)
260 PRK06835 DNA replication prote 94.8 0.12 2.7E-06 52.4 8.7 18 212-229 182-199 (329)
261 TIGR02782 TrbB_P P-type conjug 94.8 0.075 1.6E-06 53.3 7.1 68 187-277 108-175 (299)
262 PRK14088 dnaA chromosomal repl 94.8 0.19 4.1E-06 53.4 10.3 16 214-229 131-146 (440)
263 PF00448 SRP54: SRP54-type pro 94.8 0.13 2.8E-06 48.2 8.1 44 340-407 82-126 (196)
264 PRK14712 conjugal transfer nic 94.8 0.27 5.8E-06 59.3 12.4 64 197-281 835-901 (1623)
265 PF07728 AAA_5: AAA domain (dy 94.7 0.011 2.4E-07 51.9 0.7 15 215-229 1-15 (139)
266 COG1474 CDC6 Cdc6-related prot 94.7 0.25 5.4E-06 51.0 10.7 28 340-368 122-149 (366)
267 COG2256 MGS1 ATPase related to 94.7 0.22 4.8E-06 50.8 9.8 24 208-231 41-66 (436)
268 PRK09183 transposase/IS protei 94.6 0.23 4.9E-06 48.8 9.8 21 210-230 99-119 (259)
269 TIGR02881 spore_V_K stage V sp 94.6 0.19 4.1E-06 49.4 9.2 18 213-230 42-59 (261)
270 PRK12422 chromosomal replicati 94.6 0.13 2.8E-06 54.6 8.4 30 340-369 201-231 (445)
271 PHA02544 44 clamp loader, smal 94.6 0.24 5.2E-06 50.1 10.1 29 341-369 100-128 (316)
272 PF05621 TniB: Bacterial TniB 94.5 0.072 1.6E-06 52.6 6.0 56 214-285 62-117 (302)
273 PRK14086 dnaA chromosomal repl 94.5 0.21 4.4E-06 54.6 9.9 32 339-370 375-407 (617)
274 PRK07003 DNA polymerase III su 94.4 0.28 6.2E-06 54.5 10.8 29 340-369 118-146 (830)
275 COG3973 Superfamily I DNA and 94.4 0.16 3.5E-06 54.2 8.4 61 212-289 225-285 (747)
276 PHA03333 putative ATPase subun 94.4 0.39 8.4E-06 52.6 11.5 73 197-291 169-243 (752)
277 cd01122 GP4d_helicase GP4d_hel 94.4 0.47 1E-05 46.8 11.5 19 212-230 29-47 (271)
278 PF00004 AAA: ATPase family as 94.3 0.49 1.1E-05 40.5 10.2 16 342-357 59-74 (132)
279 PRK14956 DNA polymerase III su 94.3 0.11 2.4E-06 55.0 7.0 17 215-231 42-58 (484)
280 PRK08691 DNA polymerase III su 94.3 0.17 3.6E-06 55.9 8.6 18 214-231 39-56 (709)
281 PRK13851 type IV secretion sys 94.2 0.068 1.5E-06 54.5 5.2 51 203-277 152-202 (344)
282 COG4962 CpaF Flp pilus assembl 94.2 0.094 2E-06 52.5 6.0 63 193-279 153-215 (355)
283 TIGR02785 addA_Gpos recombinat 94.2 0.18 3.9E-06 60.5 9.5 125 198-352 2-126 (1232)
284 PRK08939 primosomal protein Dn 94.2 0.27 5.8E-06 49.5 9.3 17 213-229 156-172 (306)
285 TIGR01073 pcrA ATP-dependent D 94.1 0.23 5.1E-06 56.4 9.9 72 196-289 3-74 (726)
286 TIGR03015 pepcterm_ATPase puta 94.1 0.26 5.6E-06 48.5 9.1 34 197-230 23-60 (269)
287 TIGR02760 TraI_TIGR conjugativ 94.1 0.43 9.4E-06 59.6 12.5 66 196-280 1018-1084(1960)
288 PRK06995 flhF flagellar biosyn 94.0 0.16 3.6E-06 53.9 7.8 90 212-325 255-346 (484)
289 PRK00771 signal recognition pa 94.0 0.38 8.3E-06 50.7 10.4 19 213-231 95-113 (437)
290 PHA03372 DNA packaging termina 94.0 1.2 2.6E-05 48.1 14.0 133 213-406 202-337 (668)
291 TIGR02640 gas_vesic_GvpN gas v 94.0 0.35 7.6E-06 47.5 9.6 20 211-230 19-38 (262)
292 COG1435 Tdk Thymidine kinase [ 93.9 0.14 3.1E-06 47.1 6.1 107 213-370 4-110 (201)
293 PRK04195 replication factor C 93.9 0.21 4.6E-06 53.7 8.6 17 213-229 39-55 (482)
294 PRK12323 DNA polymerase III su 93.9 0.34 7.5E-06 53.0 10.0 16 215-230 40-55 (700)
295 PF05496 RuvB_N: Holliday junc 93.8 0.15 3.3E-06 48.3 6.3 16 214-229 51-66 (233)
296 PLN03025 replication factor C 93.8 0.59 1.3E-05 47.4 11.2 16 214-229 35-50 (319)
297 smart00490 HELICc helicase sup 93.7 0.1 2.2E-06 40.4 4.4 37 501-537 2-38 (82)
298 COG0593 DnaA ATPase involved i 93.7 0.38 8.3E-06 49.8 9.5 30 341-370 175-205 (408)
299 PRK14964 DNA polymerase III su 93.7 0.35 7.6E-06 51.7 9.5 18 214-231 36-53 (491)
300 PF06745 KaiC: KaiC; InterPro 93.6 0.3 6.4E-06 46.8 8.2 53 212-287 18-70 (226)
301 PRK12724 flagellar biosynthesi 93.6 1.5 3.2E-05 45.8 13.6 19 214-232 224-242 (432)
302 PRK14960 DNA polymerase III su 93.5 0.16 3.5E-06 55.6 6.8 28 340-368 117-144 (702)
303 PRK10689 transcription-repair 93.5 0.24 5.3E-06 58.5 8.7 79 264-353 809-891 (1147)
304 PF13177 DNA_pol3_delta2: DNA 93.4 1.3 2.8E-05 40.1 11.6 30 340-370 101-130 (162)
305 KOG0344 ATP-dependent RNA heli 93.4 0.99 2.1E-05 48.1 12.0 97 222-351 366-466 (593)
306 PRK08533 flagellar accessory p 93.4 0.84 1.8E-05 43.9 10.9 19 211-229 22-40 (230)
307 PRK09112 DNA polymerase III su 93.4 0.75 1.6E-05 47.2 11.0 29 339-368 139-167 (351)
308 PRK09111 DNA polymerase III su 93.3 0.63 1.4E-05 51.2 11.1 19 214-232 47-65 (598)
309 cd01126 TraG_VirD4 The TraG/Tr 93.3 0.064 1.4E-06 56.0 3.3 56 215-299 1-56 (384)
310 PRK13342 recombination factor 93.3 1.2 2.5E-05 47.0 12.7 17 214-230 37-53 (413)
311 PRK13900 type IV secretion sys 93.2 0.15 3.3E-06 51.8 5.8 33 204-237 151-183 (332)
312 cd01130 VirB11-like_ATPase Typ 93.2 0.14 3E-06 47.6 5.0 33 197-229 9-41 (186)
313 PRK14957 DNA polymerase III su 93.2 0.63 1.4E-05 50.5 10.6 29 339-368 117-145 (546)
314 TIGR00580 mfd transcription-re 93.2 0.26 5.7E-06 56.9 8.2 79 264-353 660-742 (926)
315 TIGR02928 orc1/cdc6 family rep 93.2 0.43 9.2E-06 49.3 9.2 17 213-229 40-56 (365)
316 TIGR00596 rad1 DNA repair prot 93.2 0.18 3.9E-06 57.1 6.7 68 314-408 7-74 (814)
317 PHA02244 ATPase-like protein 93.2 0.4 8.7E-06 49.0 8.5 25 205-229 111-135 (383)
318 TIGR01650 PD_CobS cobaltochela 93.1 0.42 9.1E-06 48.1 8.5 19 211-229 62-80 (327)
319 PRK07994 DNA polymerase III su 93.1 0.54 1.2E-05 52.0 10.1 28 340-368 118-145 (647)
320 KOG2170 ATPase of the AAA+ sup 93.1 0.87 1.9E-05 44.8 10.3 65 343-425 180-246 (344)
321 PRK14958 DNA polymerase III su 93.0 0.16 3.6E-06 54.7 5.9 29 340-369 118-146 (509)
322 PRK14961 DNA polymerase III su 93.0 0.35 7.6E-06 50.0 8.2 16 215-230 40-55 (363)
323 COG0630 VirB11 Type IV secreto 93.0 0.21 4.5E-06 50.4 6.2 43 195-238 125-167 (312)
324 KOG0058 Peptide exporter, ABC 92.8 0.2 4.3E-06 54.8 6.0 32 339-370 620-651 (716)
325 PF02534 T4SS-DNA_transf: Type 92.7 0.13 2.8E-06 55.3 4.6 57 214-299 45-101 (469)
326 PF01695 IstB_IS21: IstB-like 92.7 0.2 4.4E-06 46.1 5.3 21 210-230 44-64 (178)
327 PRK06645 DNA polymerase III su 92.7 0.42 9.1E-06 51.4 8.4 18 214-231 44-61 (507)
328 PRK14955 DNA polymerase III su 92.6 0.4 8.7E-06 50.2 8.0 17 215-231 40-56 (397)
329 PRK11823 DNA repair protein Ra 92.4 0.6 1.3E-05 49.6 9.1 52 212-287 79-130 (446)
330 PRK14951 DNA polymerase III su 92.3 0.63 1.4E-05 51.2 9.2 18 215-232 40-57 (618)
331 PTZ00293 thymidine kinase; Pro 92.3 0.6 1.3E-05 44.0 7.8 17 213-229 4-20 (211)
332 PRK14949 DNA polymerase III su 92.3 0.35 7.6E-06 54.8 7.3 28 340-368 118-145 (944)
333 KOG0991 Replication factor C, 92.2 0.63 1.4E-05 44.0 7.7 30 340-370 112-141 (333)
334 PF03969 AFG1_ATPase: AFG1-lik 92.2 1.4 3.1E-05 45.3 11.3 30 340-370 126-155 (362)
335 PRK14959 DNA polymerase III su 92.2 0.36 7.9E-06 52.9 7.2 19 214-232 39-57 (624)
336 PRK06620 hypothetical protein; 92.2 0.39 8.5E-06 45.6 6.6 16 214-229 45-60 (214)
337 PRK13897 type IV secretion sys 92.1 0.17 3.7E-06 55.5 4.7 58 213-299 158-215 (606)
338 PRK04537 ATP-dependent RNA hel 92.1 0.54 1.2E-05 51.7 8.5 74 264-350 257-334 (572)
339 TIGR03877 thermo_KaiC_1 KaiC d 92.1 1.1 2.3E-05 43.4 9.7 52 212-287 20-71 (237)
340 PRK13341 recombination factor 92.0 1.8 4E-05 48.7 12.6 16 214-229 53-68 (725)
341 TIGR03819 heli_sec_ATPase heli 91.9 0.39 8.5E-06 49.0 6.7 41 187-229 154-194 (340)
342 PRK08699 DNA polymerase III su 91.8 1.6 3.5E-05 44.3 11.1 31 199-229 3-37 (325)
343 PRK14965 DNA polymerase III su 91.8 1.1 2.3E-05 49.4 10.5 29 339-368 117-145 (576)
344 TIGR00678 holB DNA polymerase 91.8 1.2 2.6E-05 41.3 9.4 16 214-229 15-30 (188)
345 PRK14952 DNA polymerase III su 91.8 0.33 7.2E-06 53.1 6.4 29 339-368 116-144 (584)
346 TIGR00631 uvrb excinuclease AB 91.8 1.4 2.9E-05 49.3 11.2 93 263-371 441-537 (655)
347 PRK05563 DNA polymerase III su 91.7 0.22 4.8E-06 54.5 5.0 18 214-231 39-56 (559)
348 KOG0732 AAA+-type ATPase conta 91.7 0.95 2.1E-05 52.0 9.9 54 174-229 261-315 (1080)
349 CHL00181 cbbX CbbX; Provisiona 91.7 0.9 2E-05 45.3 8.8 18 213-230 59-76 (287)
350 KOG0733 Nuclear AAA ATPase (VC 91.6 1.5 3.2E-05 47.3 10.5 53 174-230 507-562 (802)
351 PRK04837 ATP-dependent RNA hel 91.6 0.51 1.1E-05 49.9 7.5 72 264-348 255-330 (423)
352 TIGR01425 SRP54_euk signal rec 91.6 3.2 6.9E-05 43.7 13.0 17 214-230 101-117 (429)
353 KOG0745 Putative ATP-dependent 91.6 0.19 4.2E-06 51.6 3.9 18 213-230 226-243 (564)
354 COG1197 Mfd Transcription-repa 91.5 0.52 1.1E-05 54.4 7.6 93 263-370 802-898 (1139)
355 PRK06067 flagellar accessory p 91.4 1.3 2.8E-05 42.6 9.6 19 212-230 24-42 (234)
356 PRK06964 DNA polymerase III su 91.3 1.5 3.3E-05 44.8 10.2 32 199-230 3-38 (342)
357 PF00437 T2SE: Type II/IV secr 91.3 0.19 4.1E-06 49.6 3.6 36 201-237 115-150 (270)
358 TIGR02525 plasmid_TraJ plasmid 91.3 0.32 6.9E-06 50.2 5.3 26 212-238 148-173 (372)
359 PRK07940 DNA polymerase III su 91.3 1.3 2.8E-05 46.3 9.8 16 214-229 37-52 (394)
360 KOG0741 AAA+-type ATPase [Post 91.2 2.1 4.5E-05 45.4 11.0 18 340-357 597-614 (744)
361 KOG2028 ATPase related to the 91.2 0.69 1.5E-05 46.6 7.3 59 204-285 151-211 (554)
362 PRK05896 DNA polymerase III su 91.2 0.34 7.3E-06 52.9 5.6 17 214-230 39-55 (605)
363 KOG0733 Nuclear AAA ATPase (VC 91.1 1.4 3.1E-05 47.4 9.8 55 171-229 183-239 (802)
364 TIGR00064 ftsY signal recognit 91.0 1.2 2.7E-05 43.9 9.0 19 213-231 72-90 (272)
365 PRK07471 DNA polymerase III su 91.0 1.6 3.5E-05 45.0 10.2 29 339-368 139-167 (365)
366 PRK07133 DNA polymerase III su 90.9 0.89 1.9E-05 50.8 8.6 17 215-231 42-58 (725)
367 PRK08074 bifunctional ATP-depe 90.9 1.2 2.6E-05 51.9 10.1 54 485-538 751-806 (928)
368 PRK00080 ruvB Holliday junctio 90.8 0.58 1.3E-05 47.6 6.8 18 213-230 51-68 (328)
369 PRK14948 DNA polymerase III su 90.7 0.56 1.2E-05 51.9 6.8 17 214-230 39-55 (620)
370 PTZ00110 helicase; Provisional 90.7 0.9 2E-05 49.7 8.4 72 263-347 376-451 (545)
371 PRK05986 cob(I)alamin adenolsy 90.6 7 0.00015 36.3 12.9 32 339-370 113-146 (191)
372 KOG0742 AAA+-type ATPase [Post 90.6 0.61 1.3E-05 47.6 6.3 17 213-229 384-400 (630)
373 COG0470 HolB ATPase involved i 90.6 0.38 8.1E-06 48.7 5.1 17 339-355 107-123 (325)
374 PRK08769 DNA polymerase III su 90.5 1.1 2.3E-05 45.4 8.1 34 196-229 3-42 (319)
375 COG2804 PulE Type II secretory 90.4 0.46 9.9E-06 50.2 5.5 45 190-238 237-282 (500)
376 PRK10416 signal recognition pa 90.4 3.3 7.1E-05 41.9 11.5 17 213-229 114-130 (318)
377 PRK14969 DNA polymerase III su 90.3 0.97 2.1E-05 49.1 8.2 17 215-231 40-56 (527)
378 COG0513 SrmB Superfamily II DN 90.3 1.4 3.1E-05 47.7 9.6 69 266-347 275-347 (513)
379 COG2909 MalT ATP-dependent tra 90.3 0.88 1.9E-05 50.8 7.8 41 343-407 131-171 (894)
380 TIGR02688 conserved hypothetic 90.3 1 2.2E-05 46.9 7.8 22 210-231 206-227 (449)
381 PRK13850 type IV secretion sys 90.3 0.32 6.9E-06 54.1 4.5 58 213-299 139-196 (670)
382 PRK00440 rfc replication facto 90.3 3 6.5E-05 41.9 11.4 25 518-542 275-299 (319)
383 PF05876 Terminase_GpA: Phage 90.3 0.29 6.3E-06 53.5 4.2 71 197-289 16-88 (557)
384 TIGR00767 rho transcription te 90.2 0.83 1.8E-05 47.3 7.1 18 212-229 167-184 (415)
385 cd01121 Sms Sms (bacterial rad 90.2 1.5 3.3E-05 45.3 9.2 18 212-229 81-98 (372)
386 PRK10590 ATP-dependent RNA hel 90.2 1.1 2.4E-05 47.9 8.5 71 264-347 245-319 (456)
387 KOG0331 ATP-dependent RNA heli 90.1 0.84 1.8E-05 48.6 7.2 74 261-347 338-415 (519)
388 PRK11192 ATP-dependent RNA hel 90.1 1 2.2E-05 47.9 8.0 71 264-347 245-319 (434)
389 PRK14963 DNA polymerase III su 90.0 1.1 2.3E-05 48.4 8.2 16 215-230 38-53 (504)
390 PRK09087 hypothetical protein; 90.0 0.74 1.6E-05 44.2 6.3 17 213-229 44-60 (226)
391 PHA00729 NTP-binding motif con 89.9 0.82 1.8E-05 43.6 6.3 16 214-229 18-33 (226)
392 PRK10867 signal recognition pa 89.9 3.2 6.9E-05 43.8 11.3 18 214-231 101-118 (433)
393 cd00984 DnaB_C DnaB helicase C 89.9 1.6 3.4E-05 42.2 8.6 18 212-229 12-29 (242)
394 PRK14950 DNA polymerase III su 89.9 0.6 1.3E-05 51.5 6.2 17 214-230 39-55 (585)
395 PF12846 AAA_10: AAA-like doma 89.8 0.88 1.9E-05 45.2 7.1 42 214-278 2-43 (304)
396 cd01129 PulE-GspE PulE/GspE Th 89.8 0.55 1.2E-05 46.2 5.4 45 190-238 59-104 (264)
397 KOG1016 Predicted DNA helicase 89.8 2.6 5.7E-05 46.4 10.5 91 213-325 282-385 (1387)
398 TIGR00635 ruvB Holliday juncti 89.7 0.79 1.7E-05 46.0 6.6 17 213-229 30-46 (305)
399 TIGR02788 VirB11 P-type DNA tr 89.7 0.45 9.9E-06 48.0 4.8 25 205-229 136-160 (308)
400 PF05729 NACHT: NACHT domain 89.7 2.7 5.9E-05 37.3 9.5 23 215-238 2-24 (166)
401 COG1199 DinG Rad3-related DNA 89.7 0.74 1.6E-05 51.7 7.0 58 475-536 469-527 (654)
402 PF12775 AAA_7: P-loop contain 89.6 0.3 6.5E-06 48.3 3.3 26 204-229 24-49 (272)
403 PF03237 Terminase_6: Terminas 89.5 1.5 3.4E-05 44.8 8.8 23 217-239 1-23 (384)
404 KOG0391 SNF2 family DNA-depend 89.5 0.73 1.6E-05 52.8 6.4 75 472-546 1260-1342(1958)
405 TIGR03689 pup_AAA proteasome A 89.4 1.2 2.6E-05 47.9 7.9 18 212-229 215-232 (512)
406 COG3267 ExeA Type II secretory 89.4 3.1 6.7E-05 40.1 9.7 20 212-231 49-69 (269)
407 PF01443 Viral_helicase1: Vira 89.4 0.29 6.4E-06 46.9 3.0 14 216-229 1-14 (234)
408 TIGR03878 thermo_KaiC_2 KaiC d 89.4 1.1 2.4E-05 43.9 7.1 18 212-229 35-52 (259)
409 COG4626 Phage terminase-like p 89.3 4 8.8E-05 43.7 11.5 136 197-368 61-209 (546)
410 PRK11776 ATP-dependent RNA hel 89.2 1.2 2.5E-05 47.8 7.8 72 265-349 243-318 (460)
411 TIGR00614 recQ_fam ATP-depende 89.2 1.5 3.2E-05 47.2 8.5 74 264-350 226-303 (470)
412 COG2255 RuvB Holliday junction 89.1 1.3 2.8E-05 43.4 6.9 38 321-366 90-127 (332)
413 PRK08451 DNA polymerase III su 89.1 1.4 3E-05 47.7 8.0 30 339-369 115-144 (535)
414 PRK06871 DNA polymerase III su 89.0 2.9 6.2E-05 42.4 9.9 31 199-229 4-40 (325)
415 TIGR01420 pilT_fam pilus retra 88.9 1.1 2.3E-05 46.0 7.0 18 212-229 121-138 (343)
416 TIGR00959 ffh signal recogniti 88.9 1.1 2.3E-05 47.3 6.9 16 215-230 101-116 (428)
417 COG1219 ClpX ATP-dependent pro 88.8 0.31 6.8E-06 48.2 2.7 18 213-230 97-114 (408)
418 TIGR03345 VI_ClpV1 type VI sec 88.8 1.2 2.6E-05 51.4 7.9 16 215-230 598-613 (852)
419 TIGR01243 CDC48 AAA family ATP 88.8 0.81 1.8E-05 52.0 6.5 18 212-229 211-228 (733)
420 KOG0652 26S proteasome regulat 88.8 2.6 5.6E-05 40.6 8.6 20 211-230 203-222 (424)
421 TIGR02538 type_IV_pilB type IV 88.8 0.73 1.6E-05 50.6 5.9 46 189-238 294-340 (564)
422 PRK14873 primosome assembly pr 88.8 1.1 2.3E-05 50.1 7.2 76 470-545 170-249 (665)
423 PRK14970 DNA polymerase III su 88.7 2 4.4E-05 44.4 8.9 16 214-229 40-55 (367)
424 TIGR01243 CDC48 AAA family ATP 88.7 0.83 1.8E-05 52.0 6.4 17 213-229 487-503 (733)
425 PRK11634 ATP-dependent RNA hel 88.6 1.3 2.8E-05 49.4 7.7 70 265-347 246-319 (629)
426 TIGR02012 tigrfam_recA protein 88.6 0.69 1.5E-05 46.7 5.1 24 212-236 54-77 (321)
427 PRK14953 DNA polymerase III su 88.5 1.7 3.8E-05 46.6 8.4 16 339-354 117-132 (486)
428 PRK10436 hypothetical protein; 88.4 0.71 1.5E-05 49.2 5.3 46 189-238 196-242 (462)
429 TIGR02868 CydC thiol reductant 88.3 0.51 1.1E-05 51.5 4.3 31 339-369 486-516 (529)
430 PRK08506 replicative DNA helic 88.3 2.1 4.6E-05 45.9 8.9 25 212-237 191-215 (472)
431 COG1132 MdlB ABC-type multidru 88.2 1.1 2.4E-05 49.3 6.9 32 339-370 481-512 (567)
432 PRK03992 proteasome-activating 88.0 1.7 3.7E-05 45.3 7.8 17 213-229 165-181 (389)
433 PRK14954 DNA polymerase III su 87.9 0.92 2E-05 50.1 6.0 18 214-231 39-56 (620)
434 KOG0333 U5 snRNP-like RNA heli 87.9 1.4 2.9E-05 46.5 6.7 90 263-373 516-609 (673)
435 PF13555 AAA_29: P-loop contai 87.9 0.7 1.5E-05 34.3 3.5 24 213-238 23-46 (62)
436 PRK01297 ATP-dependent RNA hel 87.9 1.7 3.7E-05 46.7 8.0 72 264-348 335-410 (475)
437 TIGR02639 ClpA ATP-dependent C 87.9 1.7 3.6E-05 49.5 8.2 15 215-229 486-500 (731)
438 PRK13822 conjugal transfer cou 87.8 0.64 1.4E-05 51.6 4.6 59 213-300 224-282 (641)
439 TIGR00763 lon ATP-dependent pr 87.7 2.2 4.9E-05 48.8 9.1 17 213-229 347-363 (775)
440 PRK04841 transcriptional regul 87.5 3.3 7.2E-05 48.3 10.7 28 343-370 123-150 (903)
441 TIGR02524 dot_icm_DotB Dot/Icm 87.4 1 2.2E-05 46.4 5.5 26 212-238 133-158 (358)
442 PRK11034 clpA ATP-dependent Cl 87.4 2.5 5.4E-05 48.0 9.1 17 213-229 207-223 (758)
443 PRK05973 replicative DNA helic 87.4 1 2.2E-05 43.4 5.3 18 212-229 63-80 (237)
444 TIGR02533 type_II_gspE general 87.3 0.76 1.6E-05 49.4 4.8 46 189-238 220-266 (486)
445 TIGR00604 rad3 DNA repair heli 87.3 3 6.5E-05 47.2 9.8 51 485-535 521-577 (705)
446 PRK12899 secA preprotein trans 87.2 2.6 5.7E-05 48.1 9.0 53 467-519 547-601 (970)
447 TIGR03880 KaiC_arch_3 KaiC dom 87.2 1.5 3.3E-05 41.8 6.4 52 212-287 15-66 (224)
448 KOG0240 Kinesin (SMY1 subfamil 87.2 6.6 0.00014 41.9 11.3 33 197-229 58-99 (607)
449 PRK06090 DNA polymerase III su 87.1 6.5 0.00014 39.7 11.0 32 198-229 4-41 (319)
450 cd00561 CobA_CobO_BtuR ATP:cor 86.9 11 0.00023 34.0 11.1 32 339-370 93-126 (159)
451 cd01131 PilT Pilus retraction 86.9 0.92 2E-05 42.5 4.6 15 215-229 3-17 (198)
452 PF03796 DnaB_C: DnaB-like hel 86.7 1.6 3.4E-05 42.7 6.4 126 212-368 18-161 (259)
453 PRK09354 recA recombinase A; P 86.7 1 2.2E-05 45.9 5.0 21 212-232 59-79 (349)
454 TIGR00643 recG ATP-dependent D 86.7 2.3 5E-05 47.4 8.4 79 264-353 448-538 (630)
455 PRK11747 dinG ATP-dependent DN 86.6 6.7 0.00015 44.3 12.0 53 477-535 527-580 (697)
456 PRK07004 replicative DNA helic 86.6 3.9 8.5E-05 43.7 9.7 24 212-236 212-235 (460)
457 PTZ00424 helicase 45; Provisio 86.6 2.6 5.5E-05 44.1 8.3 71 264-347 267-341 (401)
458 PF06733 DEAD_2: DEAD_2; Inte 86.5 0.46 9.9E-06 43.5 2.3 48 307-355 112-159 (174)
459 CHL00095 clpC Clp protease ATP 86.5 1.2 2.6E-05 51.4 6.1 15 215-229 541-555 (821)
460 PRK07993 DNA polymerase III su 86.3 2.9 6.2E-05 42.7 8.1 32 198-229 3-40 (334)
461 cd00983 recA RecA is a bacter 86.3 0.81 1.8E-05 46.2 4.0 23 212-235 54-76 (325)
462 TIGR01389 recQ ATP-dependent D 86.2 2.7 5.8E-05 46.6 8.5 71 264-347 224-298 (591)
463 TIGR02655 circ_KaiC circadian 86.2 2.7 5.9E-05 45.3 8.3 52 212-287 262-313 (484)
464 PRK11057 ATP-dependent DNA hel 86.1 2.1 4.6E-05 47.5 7.7 71 264-347 236-310 (607)
465 PRK06904 replicative DNA helic 86.1 5 0.00011 43.0 10.2 116 211-354 219-347 (472)
466 PRK13764 ATPase; Provisional 86.1 0.91 2E-05 49.7 4.6 30 208-238 252-281 (602)
467 PRK05580 primosome assembly pr 86.0 1.9 4E-05 48.6 7.2 74 471-544 173-249 (679)
468 CHL00176 ftsH cell division pr 86.0 2.6 5.6E-05 46.9 8.1 17 213-229 216-232 (638)
469 TIGR03158 cas3_cyano CRISPR-as 85.9 4.2 9.2E-05 41.9 9.3 71 264-348 272-342 (357)
470 cd01128 rho_factor Transcripti 85.9 2.1 4.6E-05 41.7 6.6 17 212-228 15-31 (249)
471 PRK13880 conjugal transfer cou 85.9 0.83 1.8E-05 50.8 4.3 59 213-299 175-233 (636)
472 TIGR00595 priA primosomal prot 85.9 2 4.4E-05 46.4 7.1 74 471-544 8-84 (505)
473 PLN00206 DEAD-box ATP-dependen 85.8 3.1 6.7E-05 45.3 8.6 72 264-347 367-442 (518)
474 cd01526 RHOD_ThiF Member of th 85.7 2.8 6.1E-05 35.7 6.7 40 485-524 71-112 (122)
475 TIGR03600 phage_DnaB phage rep 85.7 3.6 7.9E-05 43.4 8.9 24 211-235 192-215 (421)
476 PRK09376 rho transcription ter 85.6 3.2 6.9E-05 43.0 7.9 17 212-228 168-184 (416)
477 PRK11034 clpA ATP-dependent Cl 85.3 3 6.4E-05 47.4 8.3 16 215-230 490-505 (758)
478 PRK06647 DNA polymerase III su 85.3 2.3 5.1E-05 46.5 7.3 18 215-232 40-57 (563)
479 KOG0341 DEAD-box protein abstr 85.2 5.3 0.00011 40.6 9.0 92 262-374 419-514 (610)
480 KOG1969 DNA replication checkp 85.2 3.7 8E-05 45.3 8.4 27 340-367 386-412 (877)
481 PRK06305 DNA polymerase III su 85.1 1.8 3.8E-05 46.2 6.1 17 214-230 40-56 (451)
482 COG1198 PriA Primosomal protei 85.1 1.3 2.8E-05 49.5 5.3 76 469-544 226-304 (730)
483 TIGR02767 TraG-Ti Ti-type conj 85.0 1.1 2.4E-05 49.5 4.7 59 214-300 212-270 (623)
484 PRK05298 excinuclease ABC subu 84.9 5.8 0.00013 44.4 10.4 92 263-370 445-540 (652)
485 COG1221 PspF Transcriptional r 84.8 3.7 8E-05 42.6 8.0 19 212-230 100-118 (403)
486 COG1074 RecB ATP-dependent exo 84.7 1.6 3.6E-05 52.0 6.2 59 209-285 12-70 (1139)
487 cd01524 RHOD_Pyr_redox Member 84.6 1.7 3.6E-05 34.7 4.5 38 485-522 50-87 (90)
488 PRK13876 conjugal transfer cou 84.6 1.2 2.5E-05 49.7 4.6 49 213-286 144-192 (663)
489 KOG2228 Origin recognition com 84.5 17 0.00036 36.7 12.0 43 324-370 123-166 (408)
490 cd03239 ABC_SMC_head The struc 84.5 0.92 2E-05 41.7 3.3 30 340-369 115-144 (178)
491 cd01393 recA_like RecA is a b 84.5 3.2 7E-05 39.4 7.2 21 212-232 18-38 (226)
492 cd00544 CobU Adenosylcobinamid 84.5 10 0.00022 34.6 10.0 14 216-229 2-15 (169)
493 PRK13695 putative NTPase; Prov 84.4 13 0.00028 33.7 10.9 17 215-231 2-18 (174)
494 PRK14971 DNA polymerase III su 84.3 1.5 3.3E-05 48.5 5.4 29 339-368 119-147 (614)
495 TIGR03117 cas_csf4 CRISPR-asso 84.3 12 0.00025 41.6 12.1 56 476-535 461-517 (636)
496 TIGR00708 cobA cob(I)alamin ad 84.1 13 0.00029 33.9 10.5 32 339-370 95-128 (173)
497 TIGR00602 rad24 checkpoint pro 84.1 5.8 0.00013 44.0 9.7 18 213-230 110-127 (637)
498 cd03276 ABC_SMC6_euk Eukaryoti 83.8 4.9 0.00011 37.6 7.9 30 340-369 130-159 (198)
499 PF10412 TrwB_AAD_bind: Type I 83.7 1.4 3.1E-05 45.9 4.7 29 212-241 14-42 (386)
500 TIGR00150 HI0065_YjeE ATPase, 83.7 0.81 1.8E-05 39.8 2.4 20 209-228 18-37 (133)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-55 Score=418.98 Aligned_cols=304 Identities=39% Similarity=0.654 Sum_probs=273.1
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 172 TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 172 ~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
..+.+|.+|++.+.|++++...||..||+||+++||.++ +|+|||+.|.||||||.+|+|||+++|+..
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 346889999999999999999999999999999999998 799999999999999999999999999764
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhc
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~ 331 (547)
...+++|||+||||||.||.+.+..++..+|++++++.||.+...+...+..+++|||||||+|++++.+
T Consensus 127 ----------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~ 196 (476)
T KOG0330|consen 127 ----------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLEN 196 (476)
T ss_pred ----------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHh
Confidence 2348999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChh
Q 009003 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD 411 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 411 (547)
.+.+.|..++++|+||||+++++.|...+.+|+..+| ..+|+++||||++
T Consensus 197 --Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip------------------------~erqt~LfsATMt---- 246 (476)
T KOG0330|consen 197 --TKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP------------------------RERQTFLFSATMT---- 246 (476)
T ss_pred --ccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC------------------------ccceEEEEEeecc----
Confidence 4568899999999999999999999999999999999 7899999999998
Q ss_pred HHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEE
Q 009003 412 FRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491 (547)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LV 491 (547)
..+..+. +. .-.++..+.........+.+.|.|+.++..+|..+|.++++...++.+||
T Consensus 247 -------------------~kv~kL~-ra-sl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iV 305 (476)
T KOG0330|consen 247 -------------------KKVRKLQ-RA-SLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIV 305 (476)
T ss_pred -------------------hhhHHHH-hh-ccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEE
Confidence 2333333 11 22344455566666677789999999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcC----CCCCCCCC
Q 009003 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKR----PKGDRGKD 547 (547)
Q Consensus 492 F~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~----~~g~~~~~ 547 (547)
||+|+..++.++-.|+.+|+.+..+||+|++..|..+++.|+++.+.. -.|+||-|
T Consensus 306 F~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLD 365 (476)
T KOG0330|consen 306 FCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLD 365 (476)
T ss_pred EEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCC
Confidence 999999999999999999999999999999999999999999987653 34666654
No 2
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-54 Score=423.71 Aligned_cols=305 Identities=36% Similarity=0.547 Sum_probs=263.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
..+|.+++|+..|++++..+||..|||||..+||.++ -|+|++.||.||||||.+|++|+|++|+-..
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrP----------- 247 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRP----------- 247 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCc-----------
Confidence 4689999999999999999999999999999999988 6999999999999999999999999986432
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
......|||||||||+||.||+.+.++++..+.+.+++++||.+...|...++..+||+|+|||+|.+||.+.
T Consensus 248 ------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs- 320 (691)
T KOG0338|consen 248 ------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS- 320 (691)
T ss_pred ------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-
Confidence 2234569999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
..|.|++|.+||+||||+||+.+|..++..|++.+| +.+|+++||||+.
T Consensus 321 -~sf~ldsiEVLvlDEADRMLeegFademnEii~lcp------------------------k~RQTmLFSATMt------ 369 (691)
T KOG0338|consen 321 -PSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCP------------------------KNRQTMLFSATMT------ 369 (691)
T ss_pred -CCccccceeEEEechHHHHHHHHHHHHHHHHHHhcc------------------------ccccceeehhhhH------
Confidence 568899999999999999999999999999999999 8899999999998
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc---ccchHHHHHHHHHhcCCCcEE
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK---EEDKDAYLYYILSVHGQGRTI 490 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~~ll~~~~~~k~L 490 (547)
..+..++... +. .+..+.+.+.......+.|.|+.+. ...+.++|..++......++|
T Consensus 370 -----------------eeVkdL~slS-L~-kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~i 430 (691)
T KOG0338|consen 370 -----------------EEVKDLASLS-LN-KPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTI 430 (691)
T ss_pred -----------------HHHHHHHHhh-cC-CCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceE
Confidence 3344443332 12 2233334444455666788888775 356888999999877789999
Q ss_pred EEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC----CCCCCCC
Q 009003 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP----KGDRGKD 547 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~----~g~~~~~ 547 (547)
||+.|++.|.+|.-.|..+|+.+..+||.|+|.+|...++.|++...... ..+||.|
T Consensus 431 vFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLD 491 (691)
T KOG0338|consen 431 VFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLD 491 (691)
T ss_pred EEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCC
Confidence 99999999999999999999999999999999999999999999875432 3455544
No 3
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-53 Score=423.24 Aligned_cols=336 Identities=42% Similarity=0.668 Sum_probs=283.7
Q ss_pred cccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009003 171 STEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLE 250 (547)
Q Consensus 171 ~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 250 (547)
+.....|..|+|+..++++|..+||..||+||..+||.+++...|||..|.||||||+||.+|++..+....+....
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e--- 253 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE--- 253 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh---
Confidence 34567899999999999999999999999999999999995338999999999999999999999977655332111
Q ss_pred hhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHh
Q 009003 251 DKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 251 ~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~ 330 (547)
..........+.+||++||||||.||..+|..++...++++..++||.....|.+.+...++|+|+|||||+.++.
T Consensus 254 ----~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 254 ----LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred ----hhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHH
Confidence 1112222333459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
.+..+.-.++.+.+|||||||+|++.|++..+..|+.+|+-. +....+|+++||||+....
T Consensus 330 e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~-------------------~~~~qrQTlVFSATlt~~~ 390 (731)
T KOG0347|consen 330 EDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEE-------------------QKNRQRQTLVFSATLTLVL 390 (731)
T ss_pred hhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhh-------------------hcccccceEEEEEEeehhh
Confidence 877767779999999999999999999999999999999722 1125689999999987332
Q ss_pred hHHHHh-hhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcE
Q 009003 411 DFRKKL-KHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRT 489 (547)
Q Consensus 411 ~~~~~l-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~ 489 (547)
...... ..+..+. ......++.+....+++..+.+++++....+...+....+.|+..+|.-+||++|..+ +|++
T Consensus 391 ~~~~~~~~k~~~k~---~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrT 466 (731)
T KOG0347|consen 391 QQPLSSSRKKKDKE---DELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRT 466 (731)
T ss_pred cChhHHhhhccchh---hhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec-CCce
Confidence 111111 0000000 1112457888999999999999999999999999999999999999999999999887 6899
Q ss_pred EEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhh
Q 009003 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWI 536 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~ 536 (547)
|||||++..+.+|+-+|+.+++....+|+.|.|++|.+.+++|++..
T Consensus 467 lVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~ 513 (731)
T KOG0347|consen 467 LVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP 513 (731)
T ss_pred EEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC
Confidence 99999999999999999999999999999999999999999999843
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-51 Score=423.57 Aligned_cols=306 Identities=32% Similarity=0.468 Sum_probs=267.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
.|.+++|++.+...++..||..|||||.++||.++ .|+|++..|.||||||++|++|++.++....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~------------- 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ------------- 157 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhcc-------------
Confidence 79999999999999999999999999999999998 7999999999999999999999999997531
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
.......+|++|||+||||||.||..++..++....++++|++||.....|...+..+++|+|+|||||.++|..+
T Consensus 158 -~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g--- 233 (519)
T KOG0331|consen 158 -GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG--- 233 (519)
T ss_pred -ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC---
Confidence 1234456899999999999999999999999999999999999999999999999999999999999999999665
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
...|+.+.|+|+||||+|+++||..++..|+..++. ..+|+|++|||++
T Consensus 234 ~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~-----------------------~~rQtlm~saTwp-------- 282 (519)
T KOG0331|consen 234 SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR-----------------------PDRQTLMFSATWP-------- 282 (519)
T ss_pred CccccceeEEEeccHHhhhccccHHHHHHHHHhcCC-----------------------CcccEEEEeeecc--------
Confidence 588999999999999999999999999999999952 4559999999999
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccc--cccccccceEEEEEccccchHHHHHHHHHhc---CCCcEE
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTN--MCVLANKLEESFIECKEEDKDAYLYYILSVH---GQGRTI 490 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~k~L 490 (547)
..+..++..+.. ++..+.+.. ......++.|....|+...|...|..+|... ..+++|
T Consensus 283 ---------------~~v~~lA~~fl~--~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvI 345 (519)
T KOG0331|consen 283 ---------------KEVRQLAEDFLN--NPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVI 345 (519)
T ss_pred ---------------HHHHHHHHHHhc--CceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEE
Confidence 556677776644 333333332 3345567889999999889999998888865 467999
Q ss_pred EEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC----CCCCCCC
Q 009003 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP----KGDRGKD 547 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~----~g~~~~~ 547 (547)
|||+|++.|+.|+..|+..++++..|||+.+|.+|..+|+.|++|..... .++||.|
T Consensus 346 IFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 346 IFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLD 406 (519)
T ss_pred EEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCC
Confidence 99999999999999999999999999999999999999999999976532 3455544
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-49 Score=423.74 Aligned_cols=293 Identities=35% Similarity=0.572 Sum_probs=259.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
..|.+|+|++.+++++.++||..|||||.++||.++ .|+|++++|+||||||++|++|+|+.+....
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------------ 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------------ 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhccc------------
Confidence 679999999999999999999999999999999999 6999999999999999999999999974310
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
.....+ +|||+||||||.||++++..++... ++++.+++||.+...+...+..+++|||+|||||++++.+.
T Consensus 96 -----~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~- 168 (513)
T COG0513 96 -----ERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG- 168 (513)
T ss_pred -----ccCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-
Confidence 011111 9999999999999999999999999 79999999999999998888888999999999999999765
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
.+.++.++++|+||||+|+++||.+.+..|+..+| ..+|+++||||++
T Consensus 169 --~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p------------------------~~~qtllfSAT~~------ 216 (513)
T COG0513 169 --KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP------------------------PDRQTLLFSATMP------ 216 (513)
T ss_pred --CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC------------------------cccEEEEEecCCC------
Confidence 68899999999999999999999999999999998 6789999999999
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccc--cccccceEEEEEccccc-hHHHHHHHHHhcCCCcEE
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC--VLANKLEESFIECKEED-KDAYLYYILSVHGQGRTI 490 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~L 490 (547)
..+..++..+.. ++..+.+.... .....+.|+++.+.... |...|+.++......++|
T Consensus 217 -----------------~~i~~l~~~~l~--~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~I 277 (513)
T COG0513 217 -----------------DDIRELARRYLN--DPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVI 277 (513)
T ss_pred -----------------HHHHHHHHHHcc--CCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 345566665544 33334443333 36778999999999876 999999999988888999
Q ss_pred EEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|||+|+..|+.|+..|...|+.|..+||+|+|.+|.++++.|++|..+
T Consensus 278 VF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~ 325 (513)
T COG0513 278 VFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR 325 (513)
T ss_pred EEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999988654
No 6
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-50 Score=399.62 Aligned_cols=296 Identities=35% Similarity=0.508 Sum_probs=263.4
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 172 TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 172 ~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
..+..|.+|+|+....++|.+.+|..||.||+.+||.+| .|+|||..|.||||||+||++|+|++|+..++
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-------- 136 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-------- 136 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCC--------
Confidence 446789999999999999999999999999999999999 79999999999999999999999999998753
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhc
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~ 331 (547)
.+..|.-||||.|||+||.|+++.|.+.++...+.+++++||...... ..-.++.+|+|||||||+.+|..
T Consensus 137 --------s~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E-~eRi~~mNILVCTPGRLLQHmde 207 (758)
T KOG0343|consen 137 --------SPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFE-LERISQMNILVCTPGRLLQHMDE 207 (758)
T ss_pred --------CCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHH-HHhhhcCCeEEechHHHHHHhhh
Confidence 566788999999999999999999999999999999999999986444 44445789999999999999974
Q ss_pred CCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChh
Q 009003 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD 411 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 411 (547)
...+..+++.+||+||||+|++|||...+..|+..|| ..+|+++||||-..
T Consensus 208 --~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP------------------------~~RQTLLFSATqt~--- 258 (758)
T KOG0343|consen 208 --NPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLP------------------------KKRQTLLFSATQTK--- 258 (758)
T ss_pred --cCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCC------------------------hhheeeeeecccch---
Confidence 4567889999999999999999999999999999999 88999999999883
Q ss_pred HHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEE
Q 009003 412 FRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491 (547)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LV 491 (547)
++.++++-..-.+.+.-+........+.++.|+|+.++...|+.+|+.+++.|...++||
T Consensus 259 --------------------svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iV 318 (758)
T KOG0343|consen 259 --------------------SVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIV 318 (758)
T ss_pred --------------------hHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEE
Confidence 445555443334444444444445678889999999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHh
Q 009003 492 FCTSIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 492 F~~s~~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
|+.|++++..++..|+.+ |+++..+||+|+|..|..++.+|..
T Consensus 319 F~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 319 FLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred EEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH
Confidence 999999999999999986 8999999999999999999999976
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.9e-47 Score=379.06 Aligned_cols=297 Identities=31% Similarity=0.473 Sum_probs=264.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
...|..+.|++...+++.++||..+|++|..+||.++ .|+|+++.|.||||||+||++|+++.+++.+.
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~---------- 149 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF---------- 149 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhccc----------
Confidence 3567888999999999999999999999999999998 79999999999999999999999999988753
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
.+..+..+|||+|||+||.|++.+++.+..+. ++.+..++||.+.......+..+++|+|+|||||+++|++.
T Consensus 150 ------~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 150 ------KPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT 223 (543)
T ss_pred ------CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC
Confidence 34577899999999999999999999999988 89999999999998888888889999999999999999875
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
. .+...+++++|+||||+++++||...|..|+..+| +.+|+++||||.+
T Consensus 224 ~--~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp------------------------k~rqt~LFSAT~~----- 272 (543)
T KOG0342|consen 224 S--GFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP------------------------KQRQTLLFSATQP----- 272 (543)
T ss_pred C--cchhhccceeEeecchhhhhcccHHHHHHHHHhcc------------------------ccceeeEeeCCCc-----
Confidence 4 36677789999999999999999999999999999 7899999999998
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccc--cccccccceEEEEEccccchHHHHHHHHHhcCC-CcE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTN--MCVLANKLEESFIECKEEDKDAYLYYILSVHGQ-GRT 489 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~k~ 489 (547)
..+++++....-+ ++..++... .......+.|.|+.++...++..++.+|+.+.. .++
T Consensus 273 ------------------~kV~~l~~~~L~~-d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~Ki 333 (543)
T KOG0342|consen 273 ------------------SKVKDLARGALKR-DPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKI 333 (543)
T ss_pred ------------------HHHHHHHHHhhcC-CceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceE
Confidence 4466666654333 555554433 344566789999999999999999999998866 899
Q ss_pred EEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
||||+|+..+..++..|+...++|..+||+++|..|..+..+|+.-..
T Consensus 334 iVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes 381 (543)
T KOG0342|consen 334 IVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES 381 (543)
T ss_pred EEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhccc
Confidence 999999999999999999999999999999999999999999998544
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=365.96 Aligned_cols=297 Identities=38% Similarity=0.548 Sum_probs=260.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
...|..|||++++.+.+..+|+..|||+|..|||.+| .|+|+|.||.||||||++|.+|+|+++.+.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsed------------ 72 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSED------------ 72 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccC------------
Confidence 4679999999999999999999999999999999999 699999999999999999999999998544
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC-
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG- 332 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~- 332 (547)
+.+..+||++|||+||.|+.+.|..+++.+++++.+++||++.-.+...+..++||+|+|||+|..++...
T Consensus 73 --------P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 73 --------PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred --------CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 44678999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
..-...+++++++|+||||++++..|-..+..++..+| .++|+++||||+..
T Consensus 145 ~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP------------------------~~RQtLlfSATitd---- 196 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP------------------------KPRQTLLFSATITD---- 196 (442)
T ss_pred ccchhhhhceeeEEecchhhhhccchhhHHhhhhccCC------------------------CccceEEEEeehhh----
Confidence 22334589999999999999999999999999999999 77999999999972
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhc---CCCcE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVH---GQGRT 489 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~k~ 489 (547)
.+..+..-..-.+....+........+..+.+.|+.|+...+..||+.+|+.. ..+.+
T Consensus 197 -------------------~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~si 257 (442)
T KOG0340|consen 197 -------------------TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSI 257 (442)
T ss_pred -------------------HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceE
Confidence 12221111000112334445556667778999999999999999999999855 36799
Q ss_pred EEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+||+|+..+|+.|+..|+.+++++..+||.|+|.+|..++.+|++...+
T Consensus 258 mIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ 306 (442)
T KOG0340|consen 258 MIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR 306 (442)
T ss_pred EEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999999998765
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.4e-46 Score=401.03 Aligned_cols=303 Identities=25% Similarity=0.415 Sum_probs=254.0
Q ss_pred cccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 009003 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKM 248 (547)
Q Consensus 169 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 248 (547)
..|.+..+|.++++++.++++|..+||..||++|.++||.++ .|+|+|++||||||||++|++|++.++.....
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~----- 197 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQPL----- 197 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-----
Confidence 456778899999999999999999999999999999999998 79999999999999999999999998754310
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH
Q 009003 249 LEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL 328 (547)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~ 328 (547)
.....++++|||+|||+||.|+.+++..++...++++.+++||.....+...+..+++|+|+||++|+++
T Consensus 198 ----------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~ 267 (545)
T PTZ00110 198 ----------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDF 267 (545)
T ss_pred ----------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 1123468999999999999999999999999999999999999998888888888999999999999999
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
+... ...|+++++|||||||+|++++|...+..|+..++ ..+|+|+||||++.
T Consensus 268 l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------~~~q~l~~SAT~p~ 320 (545)
T PTZ00110 268 LESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------PDRQTLMWSATWPK 320 (545)
T ss_pred HHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------CCCeEEEEEeCCCH
Confidence 9653 46789999999999999999999999999999886 66899999999972
Q ss_pred ChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEecccc-ccccccceEEEEEccccchHHHHHHHHHhc--C
Q 009003 409 SADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNM-CVLANKLEESFIECKEEDKDAYLYYILSVH--G 485 (547)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~ 485 (547)
.++.++..+. ...+..+..... ......+.+.+..+....|...|..++... .
T Consensus 321 -----------------------~v~~l~~~l~-~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~ 376 (545)
T PTZ00110 321 -----------------------EVQSLARDLC-KEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRD 376 (545)
T ss_pred -----------------------HHHHHHHHHh-ccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhccc
Confidence 2333333322 111222221111 122345677777777778888888888754 4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 486 QGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
..++||||+++..|+.|+..|+..|+.+..+||+|++.+|..+++.|++|..+
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ 429 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP 429 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc
Confidence 67999999999999999999999999999999999999999999999998654
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-45 Score=388.49 Aligned_cols=300 Identities=26% Similarity=0.424 Sum_probs=252.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
.+|.+++|++.++++|..+||..|||+|.++||.++ +|+|++++||||||||++|++|+++.+......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~---------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP---------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccc----------
Confidence 679999999999999999999999999999999998 799999999999999999999999998654210
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
......++++|||+|||+||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|++++...
T Consensus 77 ---~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-- 151 (423)
T PRK04837 77 ---EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-- 151 (423)
T ss_pred ---cccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--
Confidence 001134689999999999999999999999999999999999999988888888889999999999999999543
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
.+.++++.+|||||||+|++++|...+..++..++.. ..+|+++||||++.
T Consensus 152 -~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~----------------------~~~~~~l~SAT~~~------ 202 (423)
T PRK04837 152 -HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA----------------------NQRLNMLFSATLSY------ 202 (423)
T ss_pred -CcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc----------------------cceeEEEEeccCCH------
Confidence 4779999999999999999999999999999988732 35688999999982
Q ss_pred HhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeC
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCT 494 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~ 494 (547)
.+..+..... .++..+...........+.+.+..+....|...|..++......++||||+
T Consensus 203 -----------------~~~~~~~~~~--~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 263 (423)
T PRK04837 203 -----------------RVRELAFEHM--NNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFAN 263 (423)
T ss_pred -----------------HHHHHHHHHC--CCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 2233332221 122333333333344456677777777788889999998777889999999
Q ss_pred ChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 495 SIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 495 s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++..|+.|+..|...|+.+..+||+|++.+|..+++.|++|..+
T Consensus 264 t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 307 (423)
T PRK04837 264 TKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 307 (423)
T ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999998755
No 11
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-47 Score=349.20 Aligned_cols=294 Identities=25% Similarity=0.437 Sum_probs=262.0
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
...+|++++|+..+++.++..||..|+.||+.|||.++ .|+||+++|..|+|||.+|.+.+|+.+-
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d------------- 90 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLD------------- 90 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecc-------------
Confidence 35789999999999999999999999999999999999 7999999999999999999999998752
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
.+....++|||+||||||.|+.+.+..++..++++++.+.||.+.....+.+.-+.+++.+|||++++++..+
T Consensus 91 -------~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~ 163 (400)
T KOG0328|consen 91 -------ISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR 163 (400)
T ss_pred -------cccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc
Confidence 2233468999999999999999999999999999999999999988888888889999999999999999654
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
.+....+.+||+||||.|++.||..++..|.+.|| +..|++++|||++
T Consensus 164 ---~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp------------------------~~~Qvv~~SATlp----- 211 (400)
T KOG0328|consen 164 ---SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP------------------------PGAQVVLVSATLP----- 211 (400)
T ss_pred ---cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC------------------------CCceEEEEeccCc-----
Confidence 46778999999999999999999999999999999 7899999999998
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcccc-chHHHHHHHHHhcCCCcEEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-DKDAYLYYILSVHGQGRTIV 491 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~k~LV 491 (547)
..+.+....+ .+++..+-..........|+++|+.+..+ .|+..|+++.....-..++|
T Consensus 212 ------------------~eilemt~kf--mtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavI 271 (400)
T KOG0328|consen 212 ------------------HEILEMTEKF--MTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVI 271 (400)
T ss_pred ------------------HHHHHHHHHh--cCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEE
Confidence 3444555443 44554455555666677799999998764 59999999999888889999
Q ss_pred EeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 492 F~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
||||+..+..|.+.|+..++.|..+||+|++++|.+++..||+|..+.
T Consensus 272 FcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Srv 319 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRV 319 (400)
T ss_pred EecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceE
Confidence 999999999999999999999999999999999999999999998764
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.9e-46 Score=371.07 Aligned_cols=341 Identities=29% Similarity=0.423 Sum_probs=283.4
Q ss_pred cccccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHH
Q 009003 167 EAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAA 246 (547)
Q Consensus 167 ~~~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~ 246 (547)
...+|.+..+|.+.+++..+++.+...||..|+|||+++||..+ +++|+|..|.||||||++|++|++-.+.......
T Consensus 237 g~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~l-Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~- 314 (673)
T KOG0333|consen 237 GGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGL-QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA- 314 (673)
T ss_pred CCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchh-ccCCeeeEEeccCCccccchhhHHHHHHcCCCcc-
Confidence 34678899999999999999999999999999999999999988 7999999999999999999999999886543110
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHH
Q 009003 247 KMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326 (547)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~ 326 (547)
..-...-||+++||+|||+||.||..+-.+++..++++++.++||....++.-.+..+|+|+|+|||+|.
T Consensus 315 ----------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLi 384 (673)
T KOG0333|consen 315 ----------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLI 384 (673)
T ss_pred ----------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHH
Confidence 0112345789999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCccccc-ccccccccCCCcEEEEEecc
Q 009003 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQN-CVTVSSLQRKKRQTLVFSAT 405 (547)
Q Consensus 327 ~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~i~~SAT 405 (547)
+.|.+. .+.|+.+.+||+||||+|+++||...+..|+.++|..+.....-...... +.....-.++-+|+++||||
T Consensus 385 d~Lenr---~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftat 461 (673)
T KOG0333|consen 385 DSLENR---YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTAT 461 (673)
T ss_pred HHHHHH---HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecC
Confidence 999654 47799999999999999999999999999999999765543211111111 11111222356899999999
Q ss_pred CCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcC
Q 009003 406 IALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG 485 (547)
Q Consensus 406 l~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~ 485 (547)
++ +.++.++..+.-.+- ++...........++|.++.+....+...|..++....
T Consensus 462 m~-----------------------p~verlar~ylr~pv--~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~ 516 (673)
T KOG0333|consen 462 MP-----------------------PAVERLARSYLRRPV--VVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF 516 (673)
T ss_pred CC-----------------------hHHHHHHHHHhhCCe--EEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC
Confidence 99 567777776644443 34444445556678899999999999999999999888
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc----CCCCCCCCC
Q 009003 486 QGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK----RPKGDRGKD 547 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k----~~~g~~~~~ 547 (547)
..++|||+|+++.|+.|++.|...|+.|..|||+-+|.+|+.++..|+++... --...||+|
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGID 582 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGID 582 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 88999999999999999999999999999999999999999999999997654 223456665
No 13
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-46 Score=367.13 Aligned_cols=298 Identities=31% Similarity=0.493 Sum_probs=259.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
.+|.+++|++++++++.+.||..||-||..+||.+| .|+|+++.|.||||||++|++|+++.++....-
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t---------- 87 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT---------- 87 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhc----------
Confidence 789999999999999999999999999999999999 699999999999999999999999999876531
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC--cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN--VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
.....++.++||+||+|||.|++..+.++....+ ++++-+...++.......+.+.++|+|+||++++.++..+
T Consensus 88 ----~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~ 163 (569)
T KOG0346|consen 88 ----NDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG 163 (569)
T ss_pred ----ccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc
Confidence 1345678999999999999999999999987664 5666666677777777888899999999999999999764
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
- ...+..+++||+||||.++..||.+.+..|..+|| ..+|.++||||+...
T Consensus 164 ~--~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP------------------------r~~Q~~LmSATl~dD--- 214 (569)
T KOG0346|consen 164 V--LEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP------------------------RIYQCFLMSATLSDD--- 214 (569)
T ss_pred c--chhhhheeeEEechhhhhhhcccHHHHHHHHHhCC------------------------chhhheeehhhhhhH---
Confidence 2 25689999999999999999999999999999999 778999999999833
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEecccccc-ccccceEEEEEccccchHHHHHHHHHh-cCCCcEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCV-LANKLEESFIECKEEDKDAYLYYILSV-HGQGRTI 490 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~k~L 490 (547)
++.+-.. +..++.++.+..... .+..+.|+++.|.+.+|+..++.+++. .-.|++|
T Consensus 215 --------------------v~~LKkL--~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsl 272 (569)
T KOG0346|consen 215 --------------------VQALKKL--FLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSL 272 (569)
T ss_pred --------------------HHHHHHH--hccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceE
Confidence 3333222 345566666665544 457899999999999999999999884 3589999
Q ss_pred EEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
||+||++.|.+|.-.|.+.|++.++++|.|+..-|.-|+++|-.|...
T Consensus 273 iFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd 320 (569)
T KOG0346|consen 273 IFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD 320 (569)
T ss_pred EEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee
Confidence 999999999999999999999999999999999999999999887653
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-45 Score=364.11 Aligned_cols=294 Identities=34% Similarity=0.576 Sum_probs=249.7
Q ss_pred cccccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 175 DAWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 175 ~~f~~l~--l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
..|++++ |+++++.++..+||...||+|..+||.++ +++||++.|+||||||+||++|++..+++...+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~~-------- 74 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK-------- 74 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhccC--------
Confidence 3466655 55999999999999999999999999998 799999999999999999999999999765321
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcC-CCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHh
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKG-INVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~-~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~ 330 (547)
.+.....+|||+||||||.||++++..+... .++++.+++||.+.......+. .++.|+|||||||.+++.
T Consensus 75 -------~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 75 -------TPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred -------CCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 1222467999999999999999999999877 5889999999988877666555 578899999999999997
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
. ....+++.++++||+||||+++++||..+++.|+..|| +.+++=+||||..
T Consensus 148 ~-~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP------------------------KQRRTGLFSATq~--- 199 (567)
T KOG0345|consen 148 R-EAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLP------------------------KQRRTGLFSATQT--- 199 (567)
T ss_pred c-hhhhccccccceEEecchHhHhcccHHHHHHHHHHhcc------------------------cccccccccchhh---
Confidence 6 23445677999999999999999999999999999999 7889999999987
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccc--cccccceEEEEEccccchHHHHHHHHHhcCCCc
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC--VLANKLEESFIECKEEDKDAYLYYILSVHGQGR 488 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k 488 (547)
..+.++. ..+++... .+...... ..+..+..+|+.|+..+|...++.+|..+..++
T Consensus 200 --------------------~~v~dL~-raGLRNpv-~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK 257 (567)
T KOG0345|consen 200 --------------------QEVEDLA-RAGLRNPV-RVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKK 257 (567)
T ss_pred --------------------HHHHHHH-HhhccCce-eeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcccccc
Confidence 3344433 33344433 33333333 367779999999999999999999999988999
Q ss_pred EEEEeCChHHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHh
Q 009003 489 TIVFCTSIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
+|||++|+..+++.+..|... ++.+..+||.|++.+|.++++.|++
T Consensus 258 ~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 258 CIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred EEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 999999999999999998775 6789999999999999999999998
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.8e-45 Score=387.13 Aligned_cols=296 Identities=30% Similarity=0.514 Sum_probs=250.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
+|.+|+|++.++++|.++||..||++|.++||.++ +|+|+|++||||||||++|++|+++.+.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~------------ 68 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQP------------ 68 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhccc------------
Confidence 58899999999999999999999999999999998 79999999999999999999999999854321
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
.......+++|||+||++||.|+++.+..++...++++..++|+.....+...+...++|+||||++|++++...
T Consensus 69 --~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~--- 143 (456)
T PRK10590 69 --HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN--- 143 (456)
T ss_pred --ccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---
Confidence 011233568999999999999999999999999999999999999988887888889999999999999988543
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
.+.++++++|||||||+|++++|...+..++..++ ..+|+++||||++.
T Consensus 144 ~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~------------------------~~~q~l~~SAT~~~------- 192 (456)
T PRK10590 144 AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP------------------------AKRQNLLFSATFSD------- 192 (456)
T ss_pred CcccccceEEEeecHHHHhccccHHHHHHHHHhCC------------------------ccCeEEEEeCCCcH-------
Confidence 46799999999999999999999999999999887 66899999999983
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCC
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTS 495 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s 495 (547)
.+..+...+. .++..+.+.........+.+++..+....+..++..++......++||||++
T Consensus 193 ----------------~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t 254 (456)
T PRK10590 193 ----------------DIKALAEKLL--HNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRT 254 (456)
T ss_pred ----------------HHHHHHHHHc--CCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCc
Confidence 2333333321 1222222222333344577777777777788888888887777899999999
Q ss_pred hHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 496 IAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 496 ~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+..|+.|+..|...++.+..|||+|++.+|.++++.|++|..+
T Consensus 255 ~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 297 (456)
T PRK10590 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297 (456)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999998654
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.9e-45 Score=386.11 Aligned_cols=290 Identities=34% Similarity=0.546 Sum_probs=251.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
.+|.+++|++.+.++|..+||..|||+|.++||.++ +|+|++++||||||||++|++|+++++...
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------- 69 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------- 69 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------------
Confidence 579999999999999999999999999999999998 799999999999999999999999987321
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
...+++|||+||++||.|+.++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+.
T Consensus 70 -------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~- 141 (460)
T PRK11776 70 -------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG- 141 (460)
T ss_pred -------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-
Confidence 235689999999999999999999998765 78999999999998888888899999999999999999653
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
.+.++++++|||||||+|++++|...+..++..++ ..+|+++||||++
T Consensus 142 --~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~------------------------~~~q~ll~SAT~~------ 189 (460)
T PRK11776 142 --TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP------------------------ARRQTLLFSATYP------ 189 (460)
T ss_pred --CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC------------------------cccEEEEEEecCc------
Confidence 46789999999999999999999999999999998 6789999999998
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEe
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFC 493 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~ 493 (547)
..+..+...+.- ++..+...... ....+.+.++.+....+...+..++....++++||||
T Consensus 190 -----------------~~~~~l~~~~~~--~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~ 249 (460)
T PRK11776 190 -----------------EGIAAISQRFQR--DPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFC 249 (460)
T ss_pred -----------------HHHHHHHHHhcC--CCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEE
Confidence 233444443322 22223222222 2344788888888888999999999888888999999
Q ss_pred CChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 494 TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+|+..|+.++..|...|+.+..+||+|++.+|..+++.|++|..+
T Consensus 250 ~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~ 294 (460)
T PRK11776 250 NTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS 294 (460)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999998665
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-44 Score=391.71 Aligned_cols=301 Identities=31% Similarity=0.463 Sum_probs=250.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
.+|.+|+|++.++++|..+||..|||||.++||.++ .|+|+|++||||||||++|++|+++++......
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 369999999999999999999999999999999998 799999999999999999999999988643110
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
.......+++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|||+||++|++++.+.
T Consensus 78 ---~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-- 152 (572)
T PRK04537 78 ---ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-- 152 (572)
T ss_pred ---cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--
Confidence 001123579999999999999999999999999999999999999998888888888999999999999998643
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
..+.+..+++|||||||+|++++|...+..|+..++.. ..+|+++||||++.
T Consensus 153 ~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----------------------~~~q~ll~SATl~~------ 204 (572)
T PRK04537 153 KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----------------------GTRQTLLFSATLSH------ 204 (572)
T ss_pred cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----------------------cCceEEEEeCCccH------
Confidence 23668899999999999999999999999999988721 25799999999972
Q ss_pred HhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeC
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCT 494 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~ 494 (547)
.+..+...+...+.. +...........+.+.++.+....+...|..++......++||||+
T Consensus 205 -----------------~v~~l~~~~l~~p~~--i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~n 265 (572)
T PRK04537 205 -----------------RVLELAYEHMNEPEK--LVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVN 265 (572)
T ss_pred -----------------HHHHHHHHHhcCCcE--EEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeC
Confidence 222332222111211 2122222334457777887777888888999888777889999999
Q ss_pred ChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 495 SIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 495 s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+..|+.|+..|...|+.+..|||+|++.+|.++++.|+++..+
T Consensus 266 t~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~ 309 (572)
T PRK04537 266 TKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309 (572)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999998654
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.5e-44 Score=385.17 Aligned_cols=303 Identities=28% Similarity=0.446 Sum_probs=253.6
Q ss_pred cccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 009003 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKM 248 (547)
Q Consensus 169 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 248 (547)
..|.++.+|.+++|++.+++.|...||..|||+|.++||.++ .|+|+|++||||||||++|++|++.++...+..
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~---- 189 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSG---- 189 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccc----
Confidence 456778999999999999999999999999999999999998 799999999999999999999999988643210
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH
Q 009003 249 LEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL 328 (547)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~ 328 (547)
......++++|||+|||+||.|+.+.+..++..+++++..++||.....+...+..+++|+|+||++|.++
T Consensus 190 ---------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~ 260 (518)
T PLN00206 190 ---------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDL 260 (518)
T ss_pred ---------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHH
Confidence 01123568999999999999999999999999999999999999988888777888999999999999999
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
+... .+.++++.+|||||||+|+++||...+..|+..++ .+|+++||||++.
T Consensus 261 l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-------------------------~~q~l~~SATl~~ 312 (518)
T PLN00206 261 LSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-------------------------QPQVLLFSATVSP 312 (518)
T ss_pred HHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-------------------------CCcEEEEEeeCCH
Confidence 9654 47799999999999999999999999999998874 4699999999983
Q ss_pred ChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcC--C
Q 009003 409 SADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG--Q 486 (547)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~ 486 (547)
.++.++..+ ..++..+...........+.+.++.+....+...|..++.... .
T Consensus 313 -----------------------~v~~l~~~~--~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~ 367 (518)
T PLN00206 313 -----------------------EVEKFASSL--AKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFK 367 (518)
T ss_pred -----------------------HHHHHHHHh--CCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccC
Confidence 233333332 2233344444333344456778888887778888888887543 4
Q ss_pred CcEEEEeCChHHHHHHHHHHHH-cCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 487 GRTIVFCTSIAALRHISSLLKI-LGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 487 ~k~LVF~~s~~~a~~L~~~L~~-~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.++||||+++..|+.|+..|.. .|+.+..+||+|++.+|..+++.|++|..+
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ 420 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP 420 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 6899999999999999999975 699999999999999999999999998765
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.7e-44 Score=388.68 Aligned_cols=292 Identities=31% Similarity=0.498 Sum_probs=252.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
..+|.+|+|++.++++|..+||..|||+|.++||.++ .|+|+|++||||||||++|++|+++.+...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~------------ 71 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------------ 71 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------------
Confidence 3569999999999999999999999999999999998 799999999999999999999999887321
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
...+++|||+||++||.|+++.+..+.... ++.++.++||.....+...+..+++|||+||++|++++...
T Consensus 72 --------~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~ 143 (629)
T PRK11634 72 --------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143 (629)
T ss_pred --------cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 235789999999999999999999988765 79999999999998888888889999999999999999653
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
.+.++++.+|||||||+|++++|...+..|+..++ ..+|+++||||++.
T Consensus 144 ---~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp------------------------~~~q~llfSAT~p~---- 192 (629)
T PRK11634 144 ---TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP------------------------EGHQTALFSATMPE---- 192 (629)
T ss_pred ---CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC------------------------CCCeEEEEEccCCh----
Confidence 47799999999999999999999999999999998 67899999999983
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF 492 (547)
.+..+...+.. ++..+.+.........+.+.++.+....|...|..++......++|||
T Consensus 193 -------------------~i~~i~~~~l~--~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF 251 (629)
T PRK11634 193 -------------------AIRRITRRFMK--EPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIF 251 (629)
T ss_pred -------------------hHHHHHHHHcC--CCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEE
Confidence 33444444322 223333333333445577888888888899999999988777899999
Q ss_pred eCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+|+..|..|+..|...|+.+..+||+|++.+|.+++++|++|..+
T Consensus 252 ~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ 297 (629)
T PRK11634 252 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 (629)
T ss_pred eccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999998754
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9.7e-44 Score=376.12 Aligned_cols=304 Identities=31% Similarity=0.480 Sum_probs=253.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
+|++++|++.+++.|..+||..|+++|.++||.++ +|+|++++||||+|||++|++|+++++.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------ 68 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------ 68 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhccc------------
Confidence 58899999999999999999999999999999998 79999999999999999999999999864310
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
....++++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|++++...
T Consensus 69 ----~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~--- 141 (434)
T PRK11192 69 ----RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE--- 141 (434)
T ss_pred ----cCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC---
Confidence 1123578999999999999999999999999999999999999998888888889999999999999998653
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
.+.+..+++|||||||+|++++|...+..|...++ ...|+++||||++..
T Consensus 142 ~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~~~------ 191 (434)
T PRK11192 142 NFDCRAVETLILDEADRMLDMGFAQDIETIAAETR------------------------WRKQTLLFSATLEGD------ 191 (434)
T ss_pred CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCc------------------------cccEEEEEEeecCHH------
Confidence 47789999999999999999999999999988876 567999999998621
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhcCCCcEEEEeC
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVHGQGRTIVFCT 494 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~LVF~~ 494 (547)
.+..+.... ..++..+...........+.+++..+.. ..+...|..++.....+++||||+
T Consensus 192 ----------------~~~~~~~~~--~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~ 253 (434)
T PRK11192 192 ----------------AVQDFAERL--LNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVR 253 (434)
T ss_pred ----------------HHHHHHHHH--ccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 122232222 1222233333333344557777777654 568888888888767789999999
Q ss_pred ChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC----CCCCCCC
Q 009003 495 SIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP----KGDRGKD 547 (547)
Q Consensus 495 s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~----~g~~~~~ 547 (547)
++..|+.|+..|+..|+.+..+||+|++.+|..+++.|++|..+.. ...+|+|
T Consensus 254 s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 254 TRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred ChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCcc
Confidence 9999999999999999999999999999999999999999876532 3455554
No 21
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-44 Score=353.71 Aligned_cols=302 Identities=32% Similarity=0.501 Sum_probs=260.7
Q ss_pred cccccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHH
Q 009003 167 EAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAA 246 (547)
Q Consensus 167 ~~~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~ 246 (547)
....+.+...|..++++..|+.+++...|.+|||||.+++|..+ .|+||+-.|.||||||.+|++|++-|+.....
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~e--- 290 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE--- 290 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhh---
Confidence 44567888999999999999999999999999999999999998 79999999999999999999999999976542
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHH
Q 009003 247 KMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326 (547)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~ 326 (547)
..+..+|.+|||||||+||.||+.++++|++..++++++++||.+...|...+..++.||||||+||+
T Consensus 291 ------------L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRli 358 (731)
T KOG0339|consen 291 ------------LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLI 358 (731)
T ss_pred ------------hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHH
Confidence 24466899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccC
Q 009003 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406 (547)
Q Consensus 327 ~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 406 (547)
+++ ..+..++.++++|||||||+|+++||..++.+|..++. ..+|+|+||||+
T Consensus 359 d~V---kmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------pdrQtllFsaTf 411 (731)
T KOG0339|consen 359 DMV---KMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------PDRQTLLFSATF 411 (731)
T ss_pred HHH---HhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC------------------------CcceEEEeeccc
Confidence 999 55568899999999999999999999999999999998 889999999999
Q ss_pred CCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcccc-chHHHHH-HHHHhc
Q 009003 407 ALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-DKDAYLY-YILSVH 484 (547)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~-~ll~~~ 484 (547)
+ ..++.+++.+.. ..+.++.. ........|.|.+..|+.. .|...|. .|....
T Consensus 412 ~-----------------------~kIe~lard~L~-dpVrvVqg-~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~ 466 (731)
T KOG0339|consen 412 K-----------------------KKIEKLARDILS-DPVRVVQG-EVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS 466 (731)
T ss_pred h-----------------------HHHHHHHHHHhc-CCeeEEEe-ehhccccchhheeeeccCcHHHHHHHHHHhhhhc
Confidence 8 456777766533 33333322 2222334577888888764 4554443 334444
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhh
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWI 536 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~ 536 (547)
..|++|||++-...++.++..|+..|++|..+||+|.|++|.+++..|+...
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~ 518 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR 518 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC
Confidence 5789999999999999999999999999999999999999999999998763
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-44 Score=362.11 Aligned_cols=312 Identities=29% Similarity=0.450 Sum_probs=263.1
Q ss_pred cccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 009003 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKM 248 (547)
Q Consensus 169 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 248 (547)
..|..+..|.+-.+...+..++...+|..|||+|+.+||.+. .|+++++||+||||||.+|++|++.++++.+....
T Consensus 68 ~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~-~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~-- 144 (482)
T KOG0335|consen 68 DVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIIS-GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDR-- 144 (482)
T ss_pred ccCCCcccccccchhHHHhhccccccccCCCcceeeccceee-cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccC--
Confidence 445556688888899999999999999999999999999997 79999999999999999999999999987642110
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH
Q 009003 249 LEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL 328 (547)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~ 328 (547)
........|++|||+||||||.|++++.++++-..+++++.++|+.+...+...+..++||+|||||+|.++
T Consensus 145 --------~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~ 216 (482)
T KOG0335|consen 145 --------GESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDL 216 (482)
T ss_pred --------cccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhh
Confidence 011112469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
+..+ .+.|.++++|||||||+|++ ++|...|..|+..+...+. ..+|+++||||++
T Consensus 217 ~e~g---~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------~~~qt~mFSAtfp 273 (482)
T KOG0335|consen 217 IERG---KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------NNRQTLLFSATFP 273 (482)
T ss_pred hhcc---eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc--------------------cceeEEEEeccCC
Confidence 9544 68999999999999999999 9999999999988764332 4689999999998
Q ss_pred CChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcC--
Q 009003 408 LSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG-- 485 (547)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-- 485 (547)
. .+..++..+ +..++..+..........++.|....+...+|...|++++....
T Consensus 274 ~-----------------------~iq~l~~~f-l~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~ 329 (482)
T KOG0335|consen 274 K-----------------------EIQRLAADF-LKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGP 329 (482)
T ss_pred h-----------------------hhhhhHHHH-hhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCC
Confidence 2 233333322 23334444444444556678899999999999999999997443
Q ss_pred --CC-----cEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 486 --QG-----RTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 486 --~~-----k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.+ +++|||.|++.|..|+..|...++++..+||..++.+|.++++.|++|...
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 33 899999999999999999999999999999999999999999999998643
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-45 Score=343.36 Aligned_cols=294 Identities=28% Similarity=0.496 Sum_probs=259.2
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
.-..|+++.|.+.|+..+++.||..|+|+|.++||.++ .|+|+++.|..|+|||.+|++|+|+.+.
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid------------- 148 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKID------------- 148 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcC-------------
Confidence 45679999999999999999999999999999999998 7999999999999999999999999873
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
+.....+++|+||||+||.|+...++.+++.+++.+...+||++..+..-.+.+..+++|+||||+++++..+
T Consensus 149 -------~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 149 -------PKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred -------ccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 3344679999999999999999999999999999999999999998887778889999999999999999544
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
.-.++...++|+||||.|++..|...+..++..|| +.+|++++|||+|..
T Consensus 222 ---Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP------------------------~~rQillySATFP~t--- 271 (459)
T KOG0326|consen 222 ---VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP------------------------KERQILLYSATFPLT--- 271 (459)
T ss_pred ---cccchhceEEEechhhhhhchhhhhHHHHHHHhCC------------------------ccceeeEEecccchh---
Confidence 56799999999999999999999999999999999 789999999999943
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF 492 (547)
+..+..++ ..++..+.+... .....+.|+|..+.+..|...|..++....-...|||
T Consensus 272 --------------------Vk~Fm~~~--l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIF 328 (459)
T KOG0326|consen 272 --------------------VKGFMDRH--LKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIF 328 (459)
T ss_pred --------------------HHHHHHHh--ccCcceeehhhh-hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEE
Confidence 33333332 223333444433 2334588999999999999999999988888899999
Q ss_pred eCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC
Q 009003 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP 540 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~ 540 (547)
|||.+.++.|++.+..+|+.|.++|+.|-|..|.+++..|++|.-++.
T Consensus 329 CNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnL 376 (459)
T KOG0326|consen 329 CNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNL 376 (459)
T ss_pred eccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcccccee
Confidence 999999999999999999999999999999999999999999986644
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.2e-42 Score=366.95 Aligned_cols=301 Identities=33% Similarity=0.474 Sum_probs=248.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
...|.+++|++.+.++|..+||..|+++|.++|+.++ +|+|+|+++|||||||++|++|+++.+......
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~--------- 155 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP--------- 155 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc---------
Confidence 3568889999999999999999999999999999998 799999999999999999999999998654210
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~ 332 (547)
.......+++|||+||++||.|+++.+..+....++++..++||.....+...+. ..++|+|+||++|+.++...
T Consensus 156 ----~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~ 231 (475)
T PRK01297 156 ----KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG 231 (475)
T ss_pred ----cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 0011235799999999999999999999999999999999999988776666554 57899999999999888543
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
...|+++++|||||||+++++++...+..|+..++.. ..+|+++||||++.
T Consensus 232 ---~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~----------------------~~~q~i~~SAT~~~---- 282 (475)
T PRK01297 232 ---EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK----------------------EERQTLLFSATFTD---- 282 (475)
T ss_pred ---CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----------------------CCceEEEEEeecCH----
Confidence 4678999999999999999999999999999887621 34699999999872
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF 492 (547)
.+..+...+.. ++..+...........+.+.+..+....+...|..++......++|||
T Consensus 283 -------------------~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF 341 (475)
T PRK01297 283 -------------------DVMNLAKQWTT--DPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVF 341 (475)
T ss_pred -------------------HHHHHHHHhcc--CCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEE
Confidence 23333333222 223333333333344566777777778888899999987777899999
Q ss_pred eCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+++..|+.|+..|...|+.+..+||+|++.+|.++++.|++|..+
T Consensus 342 ~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~ 387 (475)
T PRK01297 342 ANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR 387 (475)
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999998654
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-43 Score=348.21 Aligned_cols=329 Identities=26% Similarity=0.397 Sum_probs=251.4
Q ss_pred ccccccccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009003 172 TEFDAWNELRLHPLLMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLE 250 (547)
Q Consensus 172 ~~~~~f~~l~l~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 250 (547)
-....|..|||++.+...|.. +++..||.+|+++||.+| +|+|++|.++||||||++|++|+++.|.....
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~------- 204 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP------- 204 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCc-------
Confidence 345679999999999999976 899999999999999999 69999999999999999999999999976532
Q ss_pred hhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHH
Q 009003 251 DKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELM 329 (547)
Q Consensus 251 ~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l 329 (547)
+.+...|+.+||||||||||.|+|+.+.++.... .+-.+.+.||.........++.+++|+|+|||||+++|
T Consensus 205 -------ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHL 277 (708)
T KOG0348|consen 205 -------KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHL 277 (708)
T ss_pred -------cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHH
Confidence 2345678999999999999999999999998755 45557788999998899999999999999999999999
Q ss_pred hcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 330 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
.+. ..+.++.++|||+||||+|++.||...|..|+..+...... .|... .-...+|.|++|||+..
T Consensus 278 knT--~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~---------e~~~~--~lp~q~q~mLlSATLtd- 343 (708)
T KOG0348|consen 278 KNT--KSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA---------ECKDP--KLPHQLQNMLLSATLTD- 343 (708)
T ss_pred hcc--chheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch---------hcccc--cccHHHHhHhhhhhhHH-
Confidence 864 45778999999999999999999999999999988532111 11100 00124799999999984
Q ss_pred hhHHHHhhhcccccccccCCcchHH-------HHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHH
Q 009003 410 ADFRKKLKHGSLKSKQSVNGLNSIE-------TLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILS 482 (547)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~i~-------~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 482 (547)
-...|....++.+.++. ++.-. ...... .+.+.--.+ .....+.++.|.|..++..-+.=.|..+|.
T Consensus 344 --~V~rLa~~sLkDpv~I~-ld~s~~~~~p~~~a~~ev--~~~~~~~~l-~~~~iPeqL~qry~vVPpKLRLV~Laa~L~ 417 (708)
T KOG0348|consen 344 --GVNRLADLSLKDPVYIS-LDKSHSQLNPKDKAVQEV--DDGPAGDKL-DSFAIPEQLLQRYTVVPPKLRLVALAALLL 417 (708)
T ss_pred --HHHHHhhccccCceeee-ccchhhhcCcchhhhhhc--CCccccccc-ccccCcHHhhhceEecCCchhHHHHHHHHH
Confidence 34445544555554443 11100 000110 111000011 223456678899999998777665555554
Q ss_pred ----hcCCCcEEEEeCChHHHHHHHHHHHHc----------------------CCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 483 ----VHGQGRTIVFCTSIAALRHISSLLKIL----------------------GIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 483 ----~~~~~k~LVF~~s~~~a~~L~~~L~~~----------------------g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
.....++|||+.+.+.++.-+..|... +.++.-+||+|+|++|..++..|..-
T Consensus 418 ~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~ 496 (708)
T KOG0348|consen 418 NKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS 496 (708)
T ss_pred HHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc
Confidence 345679999999999999998888542 34578899999999999999999764
No 26
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=336.80 Aligned_cols=312 Identities=28% Similarity=0.428 Sum_probs=263.2
Q ss_pred ccccccccccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHh
Q 009003 169 EISTEFDAWNE-LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAK 247 (547)
Q Consensus 169 ~~~~~~~~f~~-l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 247 (547)
.+|.+..+|.+ +.-.+.++..+.+.||.+|||||.||||.+| +|.|++.+|.||+|||++|++|.+-++.....
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---- 287 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---- 287 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccch----
Confidence 46777778865 5778999999999999999999999999998 89999999999999999999998887754322
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH
Q 009003 248 MLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327 (547)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~ 327 (547)
....+.+|.+|+++|||+||.|+.-++.+++ +-++..++++||.+...+...++.+.+|+++||++|.+
T Consensus 288 ----------~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlnd 356 (629)
T KOG0336|consen 288 ----------RREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLND 356 (629)
T ss_pred ----------hhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhh
Confidence 1235678999999999999999999888774 45888999999999999999999999999999999999
Q ss_pred HHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 328 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 328 ~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
+... ..+.|.++.||||||||+||+|||..++..|+-.+. ..+|+++.|||+|
T Consensus 357 L~~~---n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------PDRqtvmTSATWP 409 (629)
T KOG0336|consen 357 LQMD---NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------PDRQTVMTSATWP 409 (629)
T ss_pred hhhc---CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC------------------------CcceeeeecccCc
Confidence 8844 468899999999999999999999999999997776 7899999999999
Q ss_pred CChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhc-CC
Q 009003 408 LSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVH-GQ 486 (547)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~ 486 (547)
..+..++..+.-.+-..++..-.. .....+.|.++...+.+|...+..++..+ +.
T Consensus 410 -----------------------~~VrrLa~sY~Kep~~v~vGsLdL-~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~n 465 (629)
T KOG0336|consen 410 -----------------------EGVRRLAQSYLKEPMIVYVGSLDL-VAVKSVKQNIIVTTDSEKLEIVQFFVANMSSN 465 (629)
T ss_pred -----------------------hHHHHHHHHhhhCceEEEecccce-eeeeeeeeeEEecccHHHHHHHHHHHHhcCCC
Confidence 566777776644444433332222 22345778888878889998888888766 46
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC----CCCCCCC
Q 009003 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP----KGDRGKD 547 (547)
Q Consensus 487 ~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~----~g~~~~~ 547 (547)
.++||||..+-.|..|+.-|...|+.+..+||+-.|.+|+.+++.|++|..+.. ..+||.|
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlD 530 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLD 530 (629)
T ss_pred ceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCC
Confidence 799999999999999999999999999999999999999999999999987633 2455654
No 27
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-42 Score=369.74 Aligned_cols=307 Identities=31% Similarity=0.499 Sum_probs=269.6
Q ss_pred ccccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHh
Q 009003 168 AEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAK 247 (547)
Q Consensus 168 ~~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 247 (547)
.+.|.+..+|...+++..++..++++||..|++||.+|||.++ .|+|||.+|.||||||++|+||++.|+...+.
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr~---- 432 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP---- 432 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCCC----
Confidence 4557889999999999999999999999999999999999998 79999999999999999999999977654431
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH
Q 009003 248 MLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327 (547)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~ 327 (547)
.....||.+|||+|||+||.||++++.+|+..+++++++++|+.....+...++.++.|+|||||++++
T Consensus 433 -----------~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD 501 (997)
T KOG0334|consen 433 -----------LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMID 501 (997)
T ss_pred -----------hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhh
Confidence 122348999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 328 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 328 ~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
++.....+...|..+.+||+||||+|++++|..++..|++.++ ..+|+++||||++
T Consensus 502 ~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr------------------------pdrQtvlfSatfp 557 (997)
T KOG0334|consen 502 ILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR------------------------PDRQTVLFSATFP 557 (997)
T ss_pred hHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc------------------------hhhhhhhhhhhhh
Confidence 9876555666688888999999999999999999999999997 7799999999998
Q ss_pred CChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc-ccchHHHHHHHHHhc-C
Q 009003 408 LSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK-EEDKDAYLYYILSVH-G 485 (547)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~-~ 485 (547)
..+..++..... .+.. +.+.....+...+.+.+..|. ...|+..|..+|... .
T Consensus 558 -----------------------r~m~~la~~vl~-~Pve-iiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e 612 (997)
T KOG0334|consen 558 -----------------------RSMEALARKVLK-KPVE-IIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE 612 (997)
T ss_pred -----------------------HHHHHHHHHhhc-CCee-EEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh
Confidence 446666666544 2222 333455556667889999999 789999999999754 5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 486 QGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
.+++||||..+..|..|...|...|+.|..+||+.++.+|..+++.|+++...+
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~L 666 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNL 666 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceE
Confidence 789999999999999999999999999999999999999999999999987653
No 28
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-42 Score=334.65 Aligned_cols=301 Identities=34% Similarity=0.524 Sum_probs=259.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
..|..++|+..+.+++.+.||..|||||+..||.+| .++|++..|.||||||.||++|+++++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSH------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhc-------------
Confidence 568899999999999999999999999999999999 799999999999999999999999998543
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
..++.|+||++|||+||.|+.+.++.+++++++++.+++||....++...+..++|||++||++++.+...
T Consensus 87 ------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve--- 157 (529)
T KOG0337|consen 87 ------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE--- 157 (529)
T ss_pred ------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh---
Confidence 25688999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
-.+.|++++|||+||||+|+++||.+++..++..+| ..+|+++||||++.
T Consensus 158 m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~------------------------~~~QTllfSatlp~------ 207 (529)
T KOG0337|consen 158 MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP------------------------ESRQTLLFSATLPR------ 207 (529)
T ss_pred eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC------------------------CcceEEEEeccCch------
Confidence 237799999999999999999999999999999999 67899999999993
Q ss_pred HhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcC-CCcEEEEe
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHG-QGRTIVFC 493 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~k~LVF~ 493 (547)
.+..++. .++.++. .+.+.-.......++..+..+....|.++|..++.... ..+++|||
T Consensus 208 -----------------~lv~fak-aGl~~p~-lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~ 268 (529)
T KOG0337|consen 208 -----------------DLVDFAK-AGLVPPV-LVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFV 268 (529)
T ss_pred -----------------hhHHHHH-ccCCCCc-eEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEe
Confidence 2333332 2333333 33444445556668888999999999999999998653 46899999
Q ss_pred CChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc----CCCCCCCCC
Q 009003 494 TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK----RPKGDRGKD 547 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k----~~~g~~~~~ 547 (547)
.|..+++.+...|+..|+.+..++|.|++..|..-+..|..+... .-.|.||.|
T Consensus 269 ~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 269 ATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred cccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 999999999999999999999999999999999999999876543 334555543
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.7e-40 Score=343.01 Aligned_cols=292 Identities=26% Similarity=0.413 Sum_probs=242.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
..+|.++++++.+.+++...||..|+|+|.++|+.++ +|+|++++||||||||++|++|+++.+..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------- 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDY------------- 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcC-------------
Confidence 4779999999999999999999999999999999998 79999999999999999999999987621
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
...++++|||+||++||.|+.+.+..++...++.+..++|+.........+..+++|+|+||++|..++...
T Consensus 93 -------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~- 164 (401)
T PTZ00424 93 -------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR- 164 (401)
T ss_pred -------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-
Confidence 123578999999999999999999999988889999999998887777777888999999999999988653
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
...++++++|||||||++++.++...+..++..++ ...|++++|||++..
T Consensus 165 --~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~---- 214 (401)
T PTZ00424 165 --HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP------------------------PDVQVALFSATMPNE---- 214 (401)
T ss_pred --CcccccccEEEEecHHHHHhcchHHHHHHHHhhCC------------------------CCcEEEEEEecCCHH----
Confidence 36689999999999999999999989999988886 668999999999831
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhcCCCcEEEE
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~LVF 492 (547)
+..+...+...+. .+...........+.++++.+.. ..+...+..++......++|||
T Consensus 215 -------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF 273 (401)
T PTZ00424 215 -------------------ILELTTKFMRDPK--RILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIY 273 (401)
T ss_pred -------------------HHHHHHHHcCCCE--EEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2222222221221 12222222234456677776654 4466777888777777899999
Q ss_pred eCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 274 ~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~ 319 (401)
T PTZ00424 274 CNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR 319 (401)
T ss_pred ecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999998765
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.8e-42 Score=331.78 Aligned_cols=307 Identities=28% Similarity=0.442 Sum_probs=251.6
Q ss_pred hcccccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHH
Q 009003 166 NEAEISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245 (547)
Q Consensus 166 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~ 245 (547)
+...+|.++.+|.++.++..+++.|+..|+..|||||.+.+|.+| .|+|+|..|-||||||++|.||++.+.++....
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~- 238 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM- 238 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHhc-
Confidence 345678899999999999999999999999999999999999998 799999999999999999999999888765322
Q ss_pred HhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC------CcEEEEEEcCCCHHHHHHHhcCCCcEEE
Q 009003 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI------NVRVVPIVGGMSTEKQERLLKARPEVVV 319 (547)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~dIlv 319 (547)
.......||..|||||+|+||.|.++.+..++..+ .++..+++||.....+...++.+.+|+|
T Consensus 239 -----------lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivV 307 (610)
T KOG0341|consen 239 -----------LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVV 307 (610)
T ss_pred -----------CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEE
Confidence 23445678999999999999999999998876533 4788899999999999999999999999
Q ss_pred eChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEE
Q 009003 320 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQT 399 (547)
Q Consensus 320 ~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 399 (547)
+|||+|.++| ..+.+.|.-++||++||||+|+++||.+.+..|+.++. ..+|+
T Consensus 308 ATPGRL~DmL---~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK------------------------~QRQT 360 (610)
T KOG0341|consen 308 ATPGRLMDML---AKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK------------------------GQRQT 360 (610)
T ss_pred cCcchHHHHH---HHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh------------------------hhhhe
Confidence 9999999999 44568899999999999999999999999999999997 77999
Q ss_pred EEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHH
Q 009003 400 LVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYY 479 (547)
Q Consensus 400 i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 479 (547)
++||||++ ..++.++......+-...+ .......-++-|..-++..+.|.-+|+.
T Consensus 361 LLFSATMP-----------------------~KIQ~FAkSALVKPvtvNV--GRAGAAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 361 LLFSATMP-----------------------KKIQNFAKSALVKPVTVNV--GRAGAASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred eeeecccc-----------------------HHHHHHHHhhcccceEEec--ccccccchhHHHHHHHHHhhhhhhhHHH
Confidence 99999999 3345555444333322222 1111111112222233344555555555
Q ss_pred HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 480 ILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 480 ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
-|.+. .-++||||..+..+..++++|--.|+.+..+||+-+|.+|..+++.|+.|.+.
T Consensus 416 CLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD 473 (610)
T KOG0341|consen 416 CLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD 473 (610)
T ss_pred HhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc
Confidence 55443 56999999999999999999999999999999999999999999999998765
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-40 Score=315.56 Aligned_cols=301 Identities=26% Similarity=0.448 Sum_probs=252.4
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
...+|.+|+|+|.|++.++.++|.+|+.||..++|.++.+ .+++|.++..|+|||.||.|.+|.++
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv------------- 154 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV------------- 154 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc-------------
Confidence 3578999999999999999999999999999999999854 57999999999999999999999886
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhc
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~ 331 (547)
+..-..|.++.|+|||+||.|+.+.+.+.++..++.+...+.+....+- -.-..+|+|+|||.+.+++..
T Consensus 155 -------d~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~k 224 (477)
T KOG0332|consen 155 -------DPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLK 224 (477)
T ss_pred -------CccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHH
Confidence 2334568999999999999999999999999998888887766522111 011247999999999999853
Q ss_pred CCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 332 GEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
.+.+++..++++|+||||.|++ .||.++-..|...+| ...|+|+||||+.
T Consensus 225 --lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP------------------------~~~QllLFSATf~--- 275 (477)
T KOG0332|consen 225 --LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP------------------------RNQQLLLFSATFV--- 275 (477)
T ss_pred --HHhhChhhceEEEecchhhhhhcccccccchhhhhhcC------------------------CcceEEeeechhH---
Confidence 2568899999999999999985 478899999999988 6789999999987
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhcCCCcE
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVHGQGRT 489 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~ 489 (547)
..+..++.+.. +++..+.+.........|.|+|+.|.. ..|+.+|+.++....-+..
T Consensus 276 --------------------e~V~~Fa~kiv--pn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqs 333 (477)
T KOG0332|consen 276 --------------------EKVAAFALKIV--PNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQS 333 (477)
T ss_pred --------------------HHHHHHHHHhc--CCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhhe
Confidence 44555555543 344444555566667779999999986 5799999999888888999
Q ss_pred EEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCC----CCCCC
Q 009003 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKG----DRGKD 547 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g----~~~~~ 547 (547)
||||.|+..|..|+..|+..|+.|.++||+|...+|..++.+|++|..|.... .||+|
T Consensus 334 iIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 334 IIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGID 395 (477)
T ss_pred EEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccc
Confidence 99999999999999999999999999999999999999999999998775432 35554
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-39 Score=315.88 Aligned_cols=291 Identities=27% Similarity=0.508 Sum_probs=256.3
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
-..+|++++|++.|++.++..||.+|+.||+.||++++ .|.|+++.+++|+|||.+|.+++++.+--
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~------------ 90 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDM------------ 90 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCc------------
Confidence 35789999999999999999999999999999999998 79999999999999999999999998721
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh-cCCCcEEEeChHHHHHHHhc
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL-KARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~dIlv~TP~~l~~~l~~ 331 (547)
......||+++|||+||.|+......++...++++..+.||.........+ ...++|+|+|||++.+++..
T Consensus 91 --------~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~ 162 (397)
T KOG0327|consen 91 --------SVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR 162 (397)
T ss_pred --------chHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc
Confidence 122357999999999999999999999999999999999999887555444 45689999999999999964
Q ss_pred CCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChh
Q 009003 332 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD 411 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 411 (547)
. .+....++++|+||||.|+..||.+.+..|++++| ...|++++|||++
T Consensus 163 ~---~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp------------------------~~vQv~l~SAT~p---- 211 (397)
T KOG0327|consen 163 G---SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP------------------------SDVQVVLLSATMP---- 211 (397)
T ss_pred c---cccccceeEEeecchHhhhccchHHHHHHHHHHcC------------------------cchhheeecccCc----
Confidence 3 46788899999999999999999999999999999 7789999999999
Q ss_pred HHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEE
Q 009003 412 FRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491 (547)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LV 491 (547)
..+..++..+ ..++..+...........+.|+|+.+....|...|+.+++ .-...+|
T Consensus 212 -------------------~~vl~vt~~f--~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~i 268 (397)
T KOG0327|consen 212 -------------------SDVLEVTKKF--MREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVI 268 (397)
T ss_pred -------------------HHHHHHHHHh--ccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceE
Confidence 4456666664 3444455555555667779999999998889999999998 5678999
Q ss_pred EeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 492 F~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
||||++.+..|...|..+++.+..+||.|.+.+|..++..|+.|..+
T Consensus 269 f~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr 315 (397)
T KOG0327|consen 269 FCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR 315 (397)
T ss_pred EecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce
Confidence 99999999999999999999999999999999999999999998764
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-39 Score=320.21 Aligned_cols=313 Identities=27% Similarity=0.380 Sum_probs=242.3
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHh--------cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 184 PLLMKSIYRLQFKEPTPIQKACIPAAAH--------QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 184 ~~l~~~l~~~~~~~~~~iQ~~~i~~~l~--------~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
..+...+..+++++.+|+|.+++|.++. .++||++.||||||||++|.+||++.+...
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-------------- 211 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-------------- 211 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC--------------
Confidence 3455668999999999999999999864 267999999999999999999999998543
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcC-----CCcEEEeChHHHHHHHh
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKA-----RPEVVVGTPGRLWELMS 330 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~dIlv~TP~~l~~~l~ 330 (547)
+....|||||+||++|+.||+..|..++.+.|+.|+.+.|..+.......+.+ ..||+|+|||||.++|.
T Consensus 212 -----~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 212 -----PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred -----CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 23458999999999999999999999999999999999999998877666654 24999999999999997
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCC-----CCCCCcc-----cccccccccccCCCcEEE
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS-----NKGQSEQ-----TQNCVTVSSLQRKKRQTL 400 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~q~i 400 (547)
+ .+.|.|++++|+||||||+|++..|..++..++.++...-.. .-...+. .....+.......+.+.+
T Consensus 287 ~--~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL 364 (620)
T KOG0350|consen 287 N--TKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKL 364 (620)
T ss_pred C--CCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhh
Confidence 5 567999999999999999999887877777777766532100 0000000 000011111122556789
Q ss_pred EEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHH
Q 009003 401 VFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYI 480 (547)
Q Consensus 401 ~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 480 (547)
+||||+...+..++.+..+...-..... .+......+..+.|+++.+....+.-+++.+
T Consensus 365 ~~satLsqdP~Kl~~l~l~~Prl~~v~~---------------------~~~~ryslp~~l~~~~vv~~~~~kpl~~~~l 423 (620)
T KOG0350|consen 365 VFSATLSQDPSKLKDLTLHIPRLFHVSK---------------------PLIGRYSLPSSLSHRLVVTEPKFKPLAVYAL 423 (620)
T ss_pred hcchhhhcChHHHhhhhcCCCceEEeec---------------------ccceeeecChhhhhceeecccccchHhHHHH
Confidence 9999999777666665433221111000 0112233456688999999998999999999
Q ss_pred HHhcCCCcEEEEeCChHHHHHHHHHHH-H---cCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 481 LSVHGQGRTIVFCTSIAALRHISSLLK-I---LGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 481 l~~~~~~k~LVF~~s~~~a~~L~~~L~-~---~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+......++|+|++++..+.+|+..|+ . .++.+..|.|+++...|.+++..|..|...
T Consensus 424 I~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~ 485 (620)
T KOG0350|consen 424 ITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN 485 (620)
T ss_pred HHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce
Confidence 999888999999999999999999998 3 367788899999999999999999998765
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.6e-37 Score=342.36 Aligned_cols=287 Identities=20% Similarity=0.199 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcC
Q 009003 181 RLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYA 260 (547)
Q Consensus 181 ~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~ 260 (547)
.+++.+.++|...||..|+++|.++||.++ .|+|+++++|||||||++|++|+++.+.+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il-~G~nvvv~apTGSGKTla~~LPiL~~l~~~------------------- 79 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAH-AGRHVVVATGTASGKSLAYQLPVLSALADD------------------- 79 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHH-CCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------------------
Confidence 388999999999999999999999999997 799999999999999999999999988532
Q ss_pred CCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHH-hcCCCCcccC
Q 009003 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELM-SGGEKHLVEL 339 (547)
Q Consensus 261 ~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l-~~~~~~~~~l 339 (547)
.++++|||+|||+||.|+...+..++ ..++++..+.|+... .+...+..+++|+|+||++|...+ .....+...|
T Consensus 80 --~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l 155 (742)
T TIGR03817 80 --PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFL 155 (742)
T ss_pred --CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHH
Confidence 24789999999999999999999987 457888888888775 444566778999999999997533 2222222348
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhc
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 419 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 419 (547)
+++++|||||||.|.+ .|..++..++..+.. +.......+|+|+||||+++..++..++...
T Consensus 156 ~~l~~vViDEah~~~g-~fg~~~~~il~rL~r-----------------i~~~~g~~~q~i~~SATi~n~~~~~~~l~g~ 217 (742)
T TIGR03817 156 RRLRYVVIDECHSYRG-VFGSHVALVLRRLRR-----------------LCARYGASPVFVLASATTADPAAAASRLIGA 217 (742)
T ss_pred hcCCEEEEeChhhccC-ccHHHHHHHHHHHHH-----------------HHHhcCCCCEEEEEecCCCCHHHHHHHHcCC
Confidence 9999999999999975 477777777766541 1111114679999999999766655554211
Q ss_pred ccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEc----------------cccchHHHHHHHHHh
Q 009003 420 SLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIEC----------------KEEDKDAYLYYILSV 483 (547)
Q Consensus 420 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~----------------~~~~k~~~l~~ll~~ 483 (547)
...++.... .........+... ....+...+..++..
T Consensus 218 -------------------------~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~ 270 (742)
T TIGR03817 218 -------------------------PVVAVTEDG--SPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE 270 (742)
T ss_pred -------------------------CeEEECCCC--CCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC
Confidence 111111000 0000000110000 012344556666653
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHHc--------CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 484 HGQGRTIVFCTSIAALRHISSLLKIL--------GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 484 ~~~~k~LVF~~s~~~a~~L~~~L~~~--------g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
..++||||+|++.|+.|+..|+.. +..+..|||+|++.+|.+++++|++|..+
T Consensus 271 --~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 271 --GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred --CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 579999999999999999998764 67899999999999999999999998765
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.6e-38 Score=319.50 Aligned_cols=302 Identities=28% Similarity=0.427 Sum_probs=252.9
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 172 TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 172 ~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
.....|++|.|...++..|...+|..||+||..|||.++ .+.|+||+|..|+|||++|.+.+++.+.
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl~------------ 88 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESLD------------ 88 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhcC------------
Confidence 345778999999999999999999999999999999998 7999999999999999999999888762
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHh
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~ 330 (547)
.....+.++||+|||++|.||.+.+..++..+ |+++.+++||+........+ +.++|+|+||||+..++.
T Consensus 89 --------~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~e 159 (980)
T KOG4284|consen 89 --------SRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVE 159 (980)
T ss_pred --------cccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHH
Confidence 33456899999999999999999999998754 89999999999876554433 468899999999999996
Q ss_pred cCCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
.+ .++.++++++|+||||.|++ ..|...|..|+..|| +.+|+++||||.+.
T Consensus 160 l~---~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP------------------------~~rQv~a~SATYp~- 211 (980)
T KOG4284|consen 160 LG---AMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP------------------------QIRQVAAFSATYPR- 211 (980)
T ss_pred hc---CCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc------------------------hhheeeEEeccCch-
Confidence 55 58899999999999999987 567899999999999 78999999999982
Q ss_pred hhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc--------cchHHHHHHHH
Q 009003 410 ADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE--------EDKDAYLYYIL 481 (547)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--------~~k~~~l~~ll 481 (547)
.+..+... +..++.+|.+.......-.|+|+++.... ..|...|-.++
T Consensus 212 ----------------------nLdn~Lsk--~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf 267 (980)
T KOG4284|consen 212 ----------------------NLDNLLSK--FMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVF 267 (980)
T ss_pred ----------------------hHHHHHHH--HhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHH
Confidence 22222222 23344555555555555568888776543 24777888888
Q ss_pred HhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC----CCCCCCC
Q 009003 482 SVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP----KGDRGKD 547 (547)
Q Consensus 482 ~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~----~g~~~~~ 547 (547)
+..+....||||+....|+.++.+|...|+.|.++.|.|+|.+|.-+++.++.+..+.. ...||+|
T Consensus 268 ~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGID 337 (980)
T KOG4284|consen 268 KSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGID 337 (980)
T ss_pred hhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCC
Confidence 88899999999999999999999999999999999999999999999999999875532 3456665
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-34 Score=324.68 Aligned_cols=291 Identities=20% Similarity=0.206 Sum_probs=217.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
.|.+++|++.+++.+...||..|+|+|.++++..+..|+|++++||||||||++|.+|+++++..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------------
Confidence 47788999999999999999999999999999855589999999999999999999999998731
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
+.++|||+||++||.|+++.|..+.. .++++..++|+...... ....++|+||||+++..++.+.
T Consensus 67 --------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~--- 131 (737)
T PRK02362 67 --------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG--- 131 (737)
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC---
Confidence 35899999999999999999998753 58999999998765332 2346899999999998888653
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
...+.++++|||||||.+.+.++...++.++..+...+ ...|+|+||||+++..++..|
T Consensus 132 ~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~---------------------~~~qii~lSATl~n~~~la~w 190 (737)
T PRK02362 132 APWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN---------------------PDLQVVALSATIGNADELADW 190 (737)
T ss_pred hhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC---------------------CCCcEEEEcccCCCHHHHHHH
Confidence 24578999999999999998888888888877664211 457999999999998999999
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEe--ccccccccccceEEEEEccc-cchHHHHHHHHHhcCCCcEEEE
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVD--LTNMCVLANKLEESFIECKE-EDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~--~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~LVF 492 (547)
+....+.... ++...... ......... .+..+.... ......+...+. .++++|||
T Consensus 191 l~~~~~~~~~-----------------rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF 249 (737)
T PRK02362 191 LDAELVDSEW-----------------RPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVF 249 (737)
T ss_pred hCCCcccCCC-----------------CCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEE
Confidence 8643322111 11000000 000000000 111111111 122233333333 46899999
Q ss_pred eCChHHHHHHHHHHHHc------------------------------------CCceEEecCCcCHHHHHHHHHHHHhhh
Q 009003 493 CTSIAALRHISSLLKIL------------------------------------GIDVWTLHAQMQQRARLKLFSQMITWI 536 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~------------------------------------g~~v~~lhg~m~~~eR~~il~~F~~~~ 536 (547)
|+|++.|+.++..|... ...|.++||+|++.+|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 99999999988887643 136889999999999999999999987
Q ss_pred hc
Q 009003 537 RK 538 (547)
Q Consensus 537 ~k 538 (547)
.+
T Consensus 330 i~ 331 (737)
T PRK02362 330 IK 331 (737)
T ss_pred Ce
Confidence 65
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=296.06 Aligned_cols=306 Identities=27% Similarity=0.376 Sum_probs=244.9
Q ss_pred cccccccccccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHH
Q 009003 168 AEISTEFDAWNE----LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEERE 243 (547)
Q Consensus 168 ~~~~~~~~~f~~----l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~ 243 (547)
..++.+..+|.. +.+++.|++.+...+|..|+|+|++|||.++ .++++++|||||||||++|.+|++++|.....
T Consensus 125 ~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~ 203 (593)
T KOG0344|consen 125 FHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ 203 (593)
T ss_pred CCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHHHhhc
Confidence 344566677765 6789999999999999999999999999998 69999999999999999999999999866532
Q ss_pred HHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhh--cCCCcEEEEEEcCCCHHH-HHHHhcCCCcEEEe
Q 009003 244 KAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA--KGINVRVVPIVGGMSTEK-QERLLKARPEVVVG 320 (547)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~--~~~~~~v~~~~g~~~~~~-~~~~~~~~~dIlv~ 320 (547)
.....+.+++|+.|||+||.|++.++.++. .+.+++++.+.....+.. ........++|+|.
T Consensus 204 ---------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 204 ---------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred ---------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 234678999999999999999999999998 777777766655433322 22223346899999
Q ss_pred ChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc-CChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEE
Q 009003 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQT 399 (547)
Q Consensus 321 TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 399 (547)
||.++..++..+ ...++++.|.++|+||||++++. .|..++..|+..+.. +...+
T Consensus 269 TP~ri~~~~~~~-~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-----------------------~~i~~ 324 (593)
T KOG0344|consen 269 TPMRIVGLLGLG-KLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-----------------------PDIRV 324 (593)
T ss_pred CHHHHHHHhcCC-CccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-----------------------cchhh
Confidence 999999999653 33478999999999999999988 889999999988763 45667
Q ss_pred EEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHH
Q 009003 400 LVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLY 478 (547)
Q Consensus 400 i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 478 (547)
-+||||++ ..++.++.......-..++...+. ....+.|..+.|.. ..|..++.
T Consensus 325 a~FSat~~-----------------------~~VEE~~~~i~~~~~~vivg~~~s--a~~~V~QelvF~gse~~K~lA~r 379 (593)
T KOG0344|consen 325 ALFSATIS-----------------------VYVEEWAELIKSDLKRVIVGLRNS--ANETVDQELVFCGSEKGKLLALR 379 (593)
T ss_pred hhhhcccc-----------------------HHHHHHHHHhhccceeEEEecchh--HhhhhhhhheeeecchhHHHHHH
Confidence 78999998 334555544333333333433332 23456677777754 57888899
Q ss_pred HHHHhcCCCcEEEEeCChHHHHHHHHHH-HHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 479 YILSVHGQGRTIVFCTSIAALRHISSLL-KILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 479 ~ll~~~~~~k~LVF~~s~~~a~~L~~~L-~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.++..--.-++|||+.+.+.|..|+..| -..++++.++||..++.+|.+++++|+.|...
T Consensus 380 q~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 380 QLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred HHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 9998777789999999999999999999 66799999999999999999999999998654
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-34 Score=317.86 Aligned_cols=282 Identities=19% Similarity=0.233 Sum_probs=216.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
.|.++++++.+.+.+...||..|+|+|.++++..+..|+|+++++|||||||++|.+|+++++...
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------------- 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------------- 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------------
Confidence 467889999999999999999999999999997545899999999999999999999999887432
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
+.++|||+|+++||.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++.+.
T Consensus 68 --------~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~--- 132 (720)
T PRK00254 68 --------GGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG--- 132 (720)
T ss_pred --------CCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC---
Confidence 3589999999999999999998764 468999999998765432 2356899999999998888543
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
...++++++|||||+|.+.+.++...+..++.++. ...|+|++|||+++..++..|
T Consensus 133 ~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~------------------------~~~qiI~lSATl~n~~~la~w 188 (720)
T PRK00254 133 SSWIKDVKLVVADEIHLIGSYDRGATLEMILTHML------------------------GRAQILGLSATVGNAEELAEW 188 (720)
T ss_pred chhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC------------------------cCCcEEEEEccCCCHHHHHHH
Confidence 24588999999999999998889999999998876 557999999999998899999
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-------cchHHHHHHHHHhcCCCc
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-------EDKDAYLYYILSVHGQGR 488 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-------~~k~~~l~~ll~~~~~~k 488 (547)
+....+... .++.+..... +.+.+..... ......++..+. .+++
T Consensus 189 l~~~~~~~~-----------------~rpv~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~ 240 (720)
T PRK00254 189 LNAELVVSD-----------------WRPVKLRKGV---------FYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKG 240 (720)
T ss_pred hCCccccCC-----------------CCCCcceeeE---------ecCCeeeccCcchhcchHHHHHHHHHHHH--hCCC
Confidence 864321110 0111000000 0000111111 111233444444 3679
Q ss_pred EEEEeCChHHHHHHHHHHHH---------------------------------cCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 489 TIVFCTSIAALRHISSLLKI---------------------------------LGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~---------------------------------~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
+||||+|++.|+.++..|.. ....|.++||+|++.+|..+++.|++|
T Consensus 241 vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G 320 (720)
T PRK00254 241 ALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREG 320 (720)
T ss_pred EEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC
Confidence 99999999999887766632 123589999999999999999999998
Q ss_pred hhc
Q 009003 536 IRK 538 (547)
Q Consensus 536 ~~k 538 (547)
..+
T Consensus 321 ~i~ 323 (720)
T PRK00254 321 LIK 323 (720)
T ss_pred CCe
Confidence 765
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2e-33 Score=317.29 Aligned_cols=299 Identities=22% Similarity=0.286 Sum_probs=210.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
+++.+.+.+.. +|..|+|+|.++||.++ .|+|++++||||||||++|.+|+++.+...... ...
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il-~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--------------~~~ 81 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIH-EGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--------------GEL 81 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHH-cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--------------cCC
Confidence 56666666554 79999999999999997 799999999999999999999999988643210 011
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHH-------hh----cCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHH
Q 009003 262 KGHLRALIITPTRELALQVTDHLKG-------VA----KGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELM 329 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~-------~~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l 329 (547)
..++++|||+||++||.|+++.+.. ++ ..+ ++++.+++|+.........+...++|+||||++|..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 3468999999999999999987653 22 233 67889999999988777778888999999999998777
Q ss_pred hcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 330 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
.+. .....|.++++|||||||.+++..+..++..++..+... .....|+|+||||+++.
T Consensus 162 ~~~-~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l--------------------~~~~~q~IglSATl~~~ 220 (876)
T PRK13767 162 NSP-KFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEEL--------------------AGGEFVRIGLSATIEPL 220 (876)
T ss_pred cCh-hHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHh--------------------cCCCCeEEEEecccCCH
Confidence 542 212358899999999999999777777666666555411 01457999999999977
Q ss_pred hhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEecccccccc----ccceEEEEEcccc----chHHHHHHHH
Q 009003 410 ADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLA----NKLEESFIECKEE----DKDAYLYYIL 481 (547)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~----~~i~~~~~~~~~~----~k~~~l~~ll 481 (547)
.++..|+....... ......++......... ..... ....... .....|..++
T Consensus 221 ~~va~~L~~~~~~~------------------~~r~~~iv~~~~~k~~~i~v~~p~~~-l~~~~~~~~~~~l~~~L~~~i 281 (876)
T PRK13767 221 EEVAKFLVGYEDDG------------------EPRDCEIVDARFVKPFDIKVISPVDD-LIHTPAEEISEALYETLHELI 281 (876)
T ss_pred HHHHHHhcCccccC------------------CCCceEEEccCCCccceEEEeccCcc-ccccccchhHHHHHHHHHHHH
Confidence 77777774321100 00011111100000000 00000 0001111 1223333433
Q ss_pred HhcCCCcEEEEeCChHHHHHHHHHHHHc------CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 482 SVHGQGRTIVFCTSIAALRHISSLLKIL------GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 482 ~~~~~~k~LVF~~s~~~a~~L~~~L~~~------g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
. ..+++||||||+..|+.++..|+.. +..+.++||+|++.+|..+++.|++|..+
T Consensus 282 ~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~ 342 (876)
T PRK13767 282 K--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK 342 (876)
T ss_pred h--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe
Confidence 3 3578999999999999999999873 46899999999999999999999998765
No 40
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2e-32 Score=302.00 Aligned_cols=275 Identities=20% Similarity=0.209 Sum_probs=195.1
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009003 180 LRLHPLLMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEK 258 (547)
Q Consensus 180 l~l~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~ 258 (547)
++....+...+.. +|+..++|+|.++|+.++ .|+|+|+++|||+|||++|++|+|..
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~--------------------- 499 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC--------------------- 499 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc---------------------
Confidence 4555666666654 799999999999999998 79999999999999999999999853
Q ss_pred cCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc------CCCcEEEeChHHHHH--HHh
Q 009003 259 YAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK------ARPEVVVGTPGRLWE--LMS 330 (547)
Q Consensus 259 ~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~dIlv~TP~~l~~--~l~ 330 (547)
++.+|||+|+++|+.+++..+... ++.+..+.++.....+...+. ..++|||+||++|.. .+.
T Consensus 500 -----~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll 570 (1195)
T PLN03137 500 -----PGITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLL 570 (1195)
T ss_pred -----CCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHH
Confidence 246999999999998666666554 889999999998776655443 468999999999852 111
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcC--ChHHHHH---HHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEecc
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENG--HFRELQS---IIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSAT 405 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~--~~~~l~~---i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 405 (547)
+..........+.+|||||||++++|| |...+.. +...++ ..|+++||||
T Consensus 571 ~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp-------------------------~vPilALTAT 625 (1195)
T PLN03137 571 RHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-------------------------NIPVLALTAT 625 (1195)
T ss_pred HHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC-------------------------CCCeEEEEec
Confidence 110111123458999999999999998 4444433 334443 4688999999
Q ss_pred CCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccc-hHHHHHHHHHh-
Q 009003 406 IALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED-KDAYLYYILSV- 483 (547)
Q Consensus 406 l~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~- 483 (547)
++... ...+...+++... .++... ....++ +|..+.... ....+..++..
T Consensus 626 AT~~V----------------------~eDI~~~L~l~~~-~vfr~S---f~RpNL--~y~Vv~k~kk~le~L~~~I~~~ 677 (1195)
T PLN03137 626 ATASV----------------------KEDVVQALGLVNC-VVFRQS---FNRPNL--WYSVVPKTKKCLEDIDKFIKEN 677 (1195)
T ss_pred CCHHH----------------------HHHHHHHcCCCCc-EEeecc---cCccce--EEEEeccchhHHHHHHHHHHhc
Confidence 87322 1122222222221 111111 111222 222222222 23445555553
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 484 HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 484 ~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+....+||||+|++.|+.|+..|...|+.+..|||+|++.+|..++++|+++..+
T Consensus 678 ~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~ 732 (1195)
T PLN03137 678 HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN 732 (1195)
T ss_pred ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc
Confidence 3467899999999999999999999999999999999999999999999998755
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-32 Score=290.81 Aligned_cols=262 Identities=20% Similarity=0.233 Sum_probs=186.8
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
.+||..|+|+|.++|+.++ .|+|+++++|||||||++|++|++.. +..+|||+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~~--------------------------~~~~lVi~ 58 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALCS--------------------------DGITLVIS 58 (470)
T ss_pred hcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHHc--------------------------CCcEEEEe
Confidence 4799999999999999998 79999999999999999999998742 24699999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcc-cCCCccEEE
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLV-ELHTLSFFV 346 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~-~l~~l~~lV 346 (547)
||++|+.|++..+..+ ++.+..+.++......... ....++|+++||+++..... ....+ .+..+++||
T Consensus 59 P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~--~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 59 PLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNR--LLQTLEERKGITLIA 132 (470)
T ss_pred cHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchh--HHHHHHhcCCcCEEE
Confidence 9999999999998865 7888888888776543322 23468999999999753210 00012 467899999
Q ss_pred EeccchhhhcCC--hHH---HHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhccc
Q 009003 347 LDEADRMIENGH--FRE---LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL 421 (547)
Q Consensus 347 iDEah~ll~~~~--~~~---l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~ 421 (547)
|||||++++||+ ... +..+...++ ..++++||||++...
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------------------------~~~~l~lTAT~~~~~----------- 176 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKFP-------------------------NVPIMALTATASPSV----------- 176 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHcC-------------------------CCceEEEecCCCHHH-----------
Confidence 999999998874 333 334444443 468999999987321
Q ss_pred ccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHH-hcCCCcEEEEeCChHHHH
Q 009003 422 KSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILS-VHGQGRTIVFCTSIAALR 500 (547)
Q Consensus 422 ~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~k~LVF~~s~~~a~ 500 (547)
...+....++... .++... ....++.. .+..........+..++. ......+||||+|+++|+
T Consensus 177 -----------~~di~~~l~l~~~-~~~~~s---~~r~nl~~-~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 177 -----------REDILRQLNLKNP-QIFCTS---FDRPNLYY-EVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred -----------HHHHHHHcCCCCC-cEEeCC---CCCCCcEE-EEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 1112222222211 111111 11112211 111112234445555555 445567799999999999
Q ss_pred HHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 501 HISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 501 ~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.++..|+..|+.+..|||+|++.+|..+++.|+++..+
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~ 278 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ 278 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999988754
No 42
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.4e-32 Score=311.22 Aligned_cols=288 Identities=20% Similarity=0.222 Sum_probs=207.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|+ .|+++|..++|.++ .|+|++++||||||||+ |++|++..+.. .++++|||+|
T Consensus 77 ~G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------------------~g~~alIL~P 131 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTT-FGLVMSLYLAK----------------------KGKKSYIIFP 131 (1176)
T ss_pred cCC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------------------cCCeEEEEec
Confidence 477 89999999999998 79999999999999995 56666554411 2578999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCH-----HHHHHHhc-CCCcEEEeChHHHHHHHhcCCCCcccCCCccEEE
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMST-----EKQERLLK-ARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~-----~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lV 346 (547)
||+||.|+++.+..++...++.+..++|+... ..+...+. ..++|+|+||++|.+++. .+.+..+++||
T Consensus 132 TreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-----~l~~~~~~~lV 206 (1176)
T PRK09401 132 TRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-----ELPKKKFDFVF 206 (1176)
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-----hccccccCEEE
Confidence 99999999999999999889888888876542 22223334 469999999999998875 25566799999
Q ss_pred Eeccchhhh-----------cCCh-HHHHHHHHhCCCCCCCCCCCCccccccc--ccccccCCCcEEEEEeccCCCChhH
Q 009003 347 LDEADRMIE-----------NGHF-RELQSIIDMLPMTNGSNKGQSEQTQNCV--TVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 347 iDEah~ll~-----------~~~~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
|||||+|++ +||. ..+..++..++..... ..+.....-+ .+.....+..|+++||||++....-
T Consensus 207 vDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~--~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~ 284 (1176)
T PRK09401 207 VDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY--EEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNR 284 (1176)
T ss_pred EEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc--chhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchH
Confidence 999999986 6774 6888888888742110 0000000000 0111112368999999999732110
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF 492 (547)
..+ .. ....+..........++.+.|+.+. .+...|..++...+ .++|||
T Consensus 285 -~~l--------------------~~------~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIF 334 (1176)
T PRK09401 285 -VKL--------------------FR------ELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIF 334 (1176)
T ss_pred -HHH--------------------hh------ccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEE
Confidence 000 00 0111222222234456788888765 67778888887664 589999
Q ss_pred eCChHH---HHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCC--------CCCCC
Q 009003 493 CTSIAA---LRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKG--------DRGKD 547 (547)
Q Consensus 493 ~~s~~~---a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g--------~~~~~ 547 (547)
|+++.. |+.|+..|+..|++|..+||+| .+.+++|++|..+...| .||+|
T Consensus 335 v~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGID 395 (1176)
T PRK09401 335 VPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGID 395 (1176)
T ss_pred EecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCC
Confidence 999777 9999999999999999999999 23469999999888777 78876
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=297.36 Aligned_cols=289 Identities=24% Similarity=0.274 Sum_probs=229.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
|++.+.+.+... |..||+.|.+|||.+. .|+++|++||||||||++..||+++.+.+.. ....
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---------------~~~~ 70 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLG---------------KGKL 70 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhcc---------------CCCC
Confidence 788999988888 9999999999999997 8999999999999999999999999997652 1123
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCC
Q 009003 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHT 341 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~ 341 (547)
..+..||||+|.|+|.+.+.+.|...+..+|+.+.+.+|++......+..++.+||+|+||+.|.-++... ...-.|.+
T Consensus 71 ~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~ 149 (814)
T COG1201 71 EDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRD 149 (814)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcC
Confidence 45789999999999999999999999999999999999999999888889999999999999998877653 33344999
Q ss_pred ccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhccc
Q 009003 342 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL 421 (547)
Q Consensus 342 l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~ 421 (547)
++++||||.|.+...-...++.--+.+|... + ...|.|++|||+.+..+..+||.....
T Consensus 150 vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l--------------------~-~~~qRIGLSATV~~~~~varfL~g~~~ 208 (814)
T COG1201 150 VRYVIVDEIHALAESKRGVQLALSLERLREL--------------------A-GDFQRIGLSATVGPPEEVAKFLVGFGD 208 (814)
T ss_pred CcEEEeehhhhhhccccchhhhhhHHHHHhh--------------------C-cccEEEeehhccCCHHHHHHHhcCCCC
Confidence 9999999999998666666655555554421 1 257999999999987788888754321
Q ss_pred ccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEE---------ccccchHHHHHHHHHhcCCCcEEEE
Q 009003 422 KSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIE---------CKEEDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 422 ~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~---------~~~~~k~~~l~~ll~~~~~~k~LVF 492 (547)
...++....... .....+. .........+..+++.+ ..+|||
T Consensus 209 -----------------------~~~Iv~~~~~k~----~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF 259 (814)
T COG1201 209 -----------------------PCEIVDVSAAKK----LEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIF 259 (814)
T ss_pred -----------------------ceEEEEcccCCc----ceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEE
Confidence 223332222111 1111111 11123455566777765 489999
Q ss_pred eCChHHHHHHHHHHHHcC-CceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSIAALRHISSLLKILG-IDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~g-~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+||+..|+.|+..|+..+ ..+..+||.++..+|..+.++|++|..+
T Consensus 260 ~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lr 306 (814)
T COG1201 260 TNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELK 306 (814)
T ss_pred EeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCce
Confidence 999999999999999986 8999999999999999999999999754
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.5e-32 Score=294.66 Aligned_cols=266 Identities=17% Similarity=0.194 Sum_probs=189.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcCC-cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEE-E
Q 009003 193 LQFKEPTPIQKACIPAAAHQGK-DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALI-I 270 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~-dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-l 270 (547)
.||. |||||.++||.++ .|+ ++++++|||||||.+|.++++... .....++.|| +
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~---------------------~~~~~~~rLv~~ 68 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE---------------------IGAKVPRRLVYV 68 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc---------------------ccccccceEEEe
Confidence 5887 9999999999998 677 678889999999997765555221 1123455665 6
Q ss_pred ccCHHHHHHHHHHHHHhhcCC-----------------------CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH
Q 009003 271 TPTRELALQVTDHLKGVAKGI-----------------------NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327 (547)
Q Consensus 271 ~Ptr~La~qv~~~l~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~ 327 (547)
+|||+||.|+++.+..+++.+ ++++..++||.....+...+..+++|||+|+..+
T Consensus 69 vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i-- 146 (844)
T TIGR02621 69 VNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI-- 146 (844)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH--
Confidence 699999999999999998755 4889999999999999999999999999996444
Q ss_pred HHhcCCC----------Ccc---cCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccC
Q 009003 328 LMSGGEK----------HLV---ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQR 394 (547)
Q Consensus 328 ~l~~~~~----------~~~---~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (547)
.+... ..+ .|+++++||||||| ++++|...+..|+..+..... .
T Consensus 147 --~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~-------------------~ 203 (844)
T TIGR02621 147 --GSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD-------------------F 203 (844)
T ss_pred --cCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-------------------c
Confidence 22210 001 27889999999999 569999999999987521000 0
Q ss_pred CCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchH
Q 009003 395 KKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKD 474 (547)
Q Consensus 395 ~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 474 (547)
.++|+|+||||++... ..+...+. ..+ ..+..........++.++ +.+....+.
T Consensus 204 rprQtLLFSAT~p~ei-----------------------~~l~~~~~-~~p-~~i~V~~~~l~a~ki~q~-v~v~~e~Kl 257 (844)
T TIGR02621 204 LPLRVVELTATSRTDG-----------------------PDRTTLLS-AED-YKHPVLKKRLAAKKIVKL-VPPSDEKFL 257 (844)
T ss_pred ccceEEEEecCCCccH-----------------------HHHHHHHc-cCC-ceeecccccccccceEEE-EecChHHHH
Confidence 2479999999998321 12221111 111 112222222233344553 344444444
Q ss_pred HHHHHHHH---hcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHH-----HHHHHHHh
Q 009003 475 AYLYYILS---VHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARL-----KLFSQMIT 534 (547)
Q Consensus 475 ~~l~~ll~---~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~-----~il~~F~~ 534 (547)
..+...+. ....+++||||||++.|+.|+..|+..++ ..|||+|++.+|. +++++|++
T Consensus 258 ~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 258 STMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred HHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhc
Confidence 33333221 23467999999999999999999999887 8999999999999 88999987
No 45
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=255.53 Aligned_cols=255 Identities=32% Similarity=0.541 Sum_probs=220.2
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
.+.|.++-|+|.+++++-..||..|+++|.++||.++ -|.||+++|..|.|||.+|++..|+.+-
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqie-------------- 105 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIE-------------- 105 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcC--------------
Confidence 3668888999999999999999999999999999998 5999999999999999999999998862
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
+..+...+||+|.||+||.||.+++..+++++ ++++.+++||.........+++-++|+|+|||+++.+..+.
T Consensus 106 ------pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k 179 (387)
T KOG0329|consen 106 ------PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR 179 (387)
T ss_pred ------CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc
Confidence 33445789999999999999999999999987 68999999999999999999999999999999999998654
Q ss_pred CCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChh
Q 009003 333 EKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD 411 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 411 (547)
.+.|+++..+|+||||.|++ ..++..++.|++..| ...|+++||||++
T Consensus 180 ---~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp------------------------~~KQvmmfsatls---- 228 (387)
T KOG0329|consen 180 ---SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLS---- 228 (387)
T ss_pred ---cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc------------------------ccceeeeeeeecc----
Confidence 58899999999999999875 367899999999888 7789999999998
Q ss_pred HHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEE
Q 009003 412 FRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIV 491 (547)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LV 491 (547)
..+..+++.+.-.+--.+++-. .......++|+|+...+.+|...+.++|....-..++|
T Consensus 229 -------------------keiRpvC~kFmQdPmEi~vDdE-~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvI 288 (387)
T KOG0329|consen 229 -------------------KEIRPVCHKFMQDPMEIFVDDE-AKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVI 288 (387)
T ss_pred -------------------hhhHHHHHhhhcCchhhhccch-hhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeE
Confidence 5677888877544443333322 23445568999999999999999999999888889999
Q ss_pred EeCChHHHH
Q 009003 492 FCTSIAALR 500 (547)
Q Consensus 492 F~~s~~~a~ 500 (547)
|+.++....
T Consensus 289 FvKsv~Rl~ 297 (387)
T KOG0329|consen 289 FVKSVQRLS 297 (387)
T ss_pred eeehhhhhh
Confidence 999987744
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.2e-31 Score=290.97 Aligned_cols=269 Identities=17% Similarity=0.206 Sum_probs=194.9
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 183 HPLLMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 183 ~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
.......|.. +||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++..
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~------------------------ 64 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL------------------------ 64 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc------------------------
Confidence 3333444444 799999999999999998 79999999999999999999998853
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcc
Q 009003 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLV 337 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~ 337 (547)
...+|||+|+++|+.|++..+..+ ++.+..+.++......... .....+|+++||++|...... ..+
T Consensus 65 --~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~---~~l 135 (607)
T PRK11057 65 --DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL---EHL 135 (607)
T ss_pred --CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH---HHH
Confidence 236999999999999999999876 7778788887776544332 234689999999998632110 113
Q ss_pred cCCCccEEEEeccchhhhcCC--h---HHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 338 ELHTLSFFVLDEADRMIENGH--F---RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 338 ~l~~l~~lViDEah~ll~~~~--~---~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
....+++|||||||++++||+ . ..+..+...++ ..++++||||++...
T Consensus 136 ~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-------------------------~~~~v~lTAT~~~~~-- 188 (607)
T PRK11057 136 AHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------------------------TLPFMALTATADDTT-- 188 (607)
T ss_pred hhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC-------------------------CCcEEEEecCCChhH--
Confidence 345789999999999998874 3 34444555543 468999999988432
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF 492 (547)
...+.....+......+... ...++ .+..+........+..++.....+++|||
T Consensus 189 --------------------~~di~~~l~l~~~~~~~~~~----~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIF 242 (607)
T PRK11057 189 --------------------RQDIVRLLGLNDPLIQISSF----DRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIY 242 (607)
T ss_pred --------------------HHHHHHHhCCCCeEEEECCC----CCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEE
Confidence 11122222222222111111 11122 12222333455667777777778899999
Q ss_pred eCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+|+++|+.++..|+..|+.+..|||+|++.+|.++++.|+++..+
T Consensus 243 c~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~ 288 (607)
T PRK11057 243 CNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ 288 (607)
T ss_pred ECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999999988654
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-31 Score=297.72 Aligned_cols=285 Identities=19% Similarity=0.227 Sum_probs=211.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
.|++++|++.+.+.+...+|. ++++|.++++.+. ++++++++||||||||+++.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 467889999999999999996 9999999999986 79999999999999999999999887632
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
+.++|||+|+++||.|+++.+..+. ..++++...+|+...... ....++|+|+||+++..++.+.
T Consensus 65 --------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~--- 129 (674)
T PRK01172 65 --------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD--- 129 (674)
T ss_pred --------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC---
Confidence 3579999999999999999999864 468888888888664322 2346899999999998888543
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
...+.++++|||||||.+.+.++...+..++..+...+ ...|+|+||||+++..++..|
T Consensus 130 ~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~---------------------~~~riI~lSATl~n~~~la~w 188 (674)
T PRK01172 130 PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN---------------------PDARILALSATVSNANELAQW 188 (674)
T ss_pred hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC---------------------cCCcEEEEeCccCCHHHHHHH
Confidence 34588999999999999988778777777766543111 457999999999988888888
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh--cCCCcEEEEe
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV--HGQGRTIVFC 493 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~LVF~ 493 (547)
+....+... +++.+..+..... .+.+......... .+..++.. ..++++||||
T Consensus 189 l~~~~~~~~-----------------~r~vpl~~~i~~~-------~~~~~~~~~~~~~-~~~~~i~~~~~~~~~vLVF~ 243 (674)
T PRK01172 189 LNASLIKSN-----------------FRPVPLKLGILYR-------KRLILDGYERSQV-DINSLIKETVNDGGQVLVFV 243 (674)
T ss_pred hCCCccCCC-----------------CCCCCeEEEEEec-------Ceeeecccccccc-cHHHHHHHHHhCCCcEEEEe
Confidence 854322111 1111111100000 0011100001111 12233332 2468999999
Q ss_pred CChHHHHHHHHHHHHc-------------------------CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 494 TSIAALRHISSLLKIL-------------------------GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~-------------------------g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+|++.|+.++..|... ...|.++||+|++.+|..+++.|++|..+
T Consensus 244 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~ 313 (674)
T PRK01172 244 SSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK 313 (674)
T ss_pred ccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 9999999999888653 12578899999999999999999998765
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3e-31 Score=290.50 Aligned_cols=259 Identities=19% Similarity=0.301 Sum_probs=193.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+||..++|+|.++|+.++ +|+|+++++|||+|||++|++|++.. ...+|||+|
T Consensus 9 fg~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~~--------------------------~g~~lVisP 61 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALLL--------------------------KGLTVVISP 61 (591)
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHHc--------------------------CCcEEEEcC
Confidence 899999999999999998 79999999999999999999998842 236899999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViD 348 (547)
+++|+.|++..+..+ ++.+..+.++......... .....+|+++||++|..... ...+...++++||||
T Consensus 62 l~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~---~~~l~~~~l~~iViD 134 (591)
T TIGR01389 62 LISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYF---LNMLQRIPIALVAVD 134 (591)
T ss_pred CHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHH---HHHHhcCCCCEEEEe
Confidence 999999999999876 7888888888877654432 34578999999999864221 112446789999999
Q ss_pred ccchhhhcCC--h---HHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhccccc
Q 009003 349 EADRMIENGH--F---RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKS 423 (547)
Q Consensus 349 Eah~ll~~~~--~---~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~ 423 (547)
|||++.+||. . ..+..+...++ ..++++||||.+...
T Consensus 135 EaH~i~~~g~~frp~y~~l~~l~~~~~-------------------------~~~vi~lTAT~~~~~------------- 176 (591)
T TIGR01389 135 EAHCVSQWGHDFRPEYQRLGSLAERFP-------------------------QVPRIALTATADAET------------- 176 (591)
T ss_pred CCcccccccCccHHHHHHHHHHHHhCC-------------------------CCCEEEEEeCCCHHH-------------
Confidence 9999998874 3 34445555554 235999999987322
Q ss_pred ccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHH
Q 009003 424 KQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHIS 503 (547)
Q Consensus 424 ~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~ 503 (547)
...+.....+.....++.. ....++ .+.......+...+..++..+..+++||||+|++.|+.++
T Consensus 177 ---------~~~i~~~l~~~~~~~~~~~----~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la 241 (591)
T TIGR01389 177 ---------RQDIRELLRLADANEFITS----FDRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELA 241 (591)
T ss_pred ---------HHHHHHHcCCCCCCeEecC----CCCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 1111111212221111111 111122 2222334456777888888777789999999999999999
Q ss_pred HHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 504 SLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 504 ~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
..|...|+++..|||+|+..+|..+++.|++|...
T Consensus 242 ~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~ 276 (591)
T TIGR01389 242 ERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK 276 (591)
T ss_pred HHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999998654
No 49
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.98 E-value=8.8e-31 Score=300.08 Aligned_cols=296 Identities=20% Similarity=0.228 Sum_probs=202.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCC
Q 009003 185 LLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGH 264 (547)
Q Consensus 185 ~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (547)
.+.+.+.......|+++|+.++|.++ .|+|++++||||||||+ |++|++..+.. .+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------------------~g 121 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------------------KG 121 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh----------------------cC
Confidence 34444555444589999999999998 79999999999999996 77777765421 14
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEE---EEEcCCCHHHHHH---Hhc-CCCcEEEeChHHHHHHHhcCCCCcc
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVV---PIVGGMSTEKQER---LLK-ARPEVVVGTPGRLWELMSGGEKHLV 337 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~---~~~g~~~~~~~~~---~~~-~~~dIlv~TP~~l~~~l~~~~~~~~ 337 (547)
+++|||+|||+||.|+++.+..++...++.+. .++|+.+...+.. .+. ++++|+|+||++|..++.. +
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~-----l 196 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE-----L 196 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-----h
Confidence 78999999999999999999999988776654 4678888765432 233 4599999999999887743 1
Q ss_pred cCCCccEEEEeccchhhh-----------cCChHH-HHHHHHhCCCCCCCCCCCCcccccccccccccCCCc--EEEEEe
Q 009003 338 ELHTLSFFVLDEADRMIE-----------NGHFRE-LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKR--QTLVFS 403 (547)
Q Consensus 338 ~l~~l~~lViDEah~ll~-----------~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--q~i~~S 403 (547)
.. .++++||||||+|++ +||... +..|+..++...... ....-......+... +..+ ++++||
T Consensus 197 ~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~q~~li~~S 273 (1171)
T TIGR01054 197 GP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLY-RALHAKKRLELLEAI-PGKKRGCLIVSS 273 (1171)
T ss_pred cC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHhh-hhccCcEEEEEe
Confidence 12 899999999999997 677653 566654433111000 000000000000000 1223 467799
Q ss_pred ccC-CCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHH
Q 009003 404 ATI-ALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILS 482 (547)
Q Consensus 404 ATl-~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 482 (547)
||. +... ...+ ++ ....+..........++.+.++.+.. +...|..+++
T Consensus 274 AT~~p~~~--~~~l-------------------------~r-~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~ 323 (1171)
T TIGR01054 274 ATGRPRGK--RAKL-------------------------FR-ELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVK 323 (1171)
T ss_pred CCCCcccc--HHHH-------------------------cc-cccceEecCccccccceEEEEEeccc--HHHHHHHHHH
Confidence 994 4211 0011 00 11112222223344567787776543 2456777777
Q ss_pred hcCCCcEEEEeCCh---HHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCC--------CCCCC
Q 009003 483 VHGQGRTIVFCTSI---AALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKG--------DRGKD 547 (547)
Q Consensus 483 ~~~~~k~LVF~~s~---~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g--------~~~~~ 547 (547)
.. +.++||||+++ +.|+.|+..|+..|++|..+||+|++ +++++|++|..+...| .||+|
T Consensus 324 ~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGID 394 (1171)
T TIGR01054 324 KL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLD 394 (1171)
T ss_pred Hc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCC
Confidence 65 46899999999 99999999999999999999999973 7999999999887777 58876
No 50
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=2.1e-30 Score=302.34 Aligned_cols=299 Identities=17% Similarity=0.146 Sum_probs=205.6
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCC
Q 009003 185 LLMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKG 263 (547)
Q Consensus 185 ~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (547)
.+.+.+.. +|| .|+++|+.+||.++ .|+|++++||||||||++++++++... ..
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~-----------------------~~ 121 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLA-----------------------LK 121 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHH-----------------------hc
Confidence 34455555 899 69999999999998 799999999999999996666655432 12
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCC--CcEEEEEEcCCCHHHHHH---Hhc-CCCcEEEeChHHHHHHHhcCCCCcc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGI--NVRVVPIVGGMSTEKQER---LLK-ARPEVVVGTPGRLWELMSGGEKHLV 337 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~--~~~v~~~~g~~~~~~~~~---~~~-~~~dIlv~TP~~l~~~l~~~~~~~~ 337 (547)
+.++|||+||++||.|+++.+..++..+ ++++..++|+.+...+.. .+. +.++|+|+||++|...+.. .
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~-----l 196 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE-----M 196 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH-----H
Confidence 4689999999999999999999998765 567788889988766533 233 3599999999999877643 1
Q ss_pred cCCCccEEEEeccchhhh-----------cCChHHHHH-HHHhCCCCCCCCCCCC-cccccccccccccCCCcE-EEEEe
Q 009003 338 ELHTLSFFVLDEADRMIE-----------NGHFRELQS-IIDMLPMTNGSNKGQS-EQTQNCVTVSSLQRKKRQ-TLVFS 403 (547)
Q Consensus 338 ~l~~l~~lViDEah~ll~-----------~~~~~~l~~-i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~q-~i~~S 403 (547)
....+++|||||||+|++ +||...+.. ++..++..+....... .............+..+| ++++|
T Consensus 197 ~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~S 276 (1638)
T PRK14701 197 KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVAS 276 (1638)
T ss_pred hhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEe
Confidence 126789999999999986 477777764 2222211000000000 000000000000012344 67899
Q ss_pred ccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh
Q 009003 404 ATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV 483 (547)
Q Consensus 404 ATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 483 (547)
||++...+....+ ..+..+..........++.+.|+.+....+ ..|..+++.
T Consensus 277 AT~~~r~~~~~l~---------------------------~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~ 328 (1638)
T PRK14701 277 ATGKAKGDRVKLY---------------------------RELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKK 328 (1638)
T ss_pred cCCCchhHHHHHh---------------------------hcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHh
Confidence 9998432222211 111123333333445568888887765545 567788876
Q ss_pred cCCCcEEEEeCChHH---HHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCCC--------CCCC
Q 009003 484 HGQGRTIVFCTSIAA---LRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKGD--------RGKD 547 (547)
Q Consensus 484 ~~~~k~LVF~~s~~~---a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g~--------~~~~ 547 (547)
. +..+||||+|++. |+.|+..|+..|++|..+||+ |.+++++|++|......|- ||+|
T Consensus 329 ~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGID 397 (1638)
T PRK14701 329 L-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLD 397 (1638)
T ss_pred C-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCc
Confidence 6 4689999999875 589999999999999999995 9999999999998766555 7876
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=3.2e-29 Score=280.55 Aligned_cols=268 Identities=17% Similarity=0.171 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHhc-----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 181 RLHPLLMKSIYR-LQFKEPTPIQKACIPAAAHQ-----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 181 ~l~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~-----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
..+..+...+.. ++| .||++|.+||+.++.. ++|+|+||+||||||.+|++|++..+..
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------------- 499 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------------- 499 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------------
Confidence 455566666655 688 5999999999999742 3799999999999999999999887632
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH---hc-CCCcEEEeChHHHHHHHh
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL---LK-ARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~dIlv~TP~~l~~~l~ 330 (547)
+.+++||+||++||.|+++.|..++...++++..++|+......... +. ..++|||+||.. +.
T Consensus 500 ---------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~ 566 (926)
T TIGR00580 500 ---------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ 566 (926)
T ss_pred ---------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh
Confidence 36899999999999999999999988889999999988876554433 22 368999999943 22
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
. .+.++++.+|||||+|++. ......+..++ ..+|+|+||||+.+..
T Consensus 567 ~----~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~------------------------~~~~vL~~SATpiprt 613 (926)
T TIGR00580 567 K----DVKFKDLGLLIIDEEQRFG-----VKQKEKLKELR------------------------TSVDVLTLSATPIPRT 613 (926)
T ss_pred C----CCCcccCCEEEeecccccc-----hhHHHHHHhcC------------------------CCCCEEEEecCCCHHH
Confidence 2 2568899999999999863 12233444444 5679999999965211
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEE
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTI 490 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~L 490 (547)
+........++.++...+.. ...+.+++...........+...+ ..+++++
T Consensus 614 -------------------------l~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~ 664 (926)
T TIGR00580 614 -------------------------LHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPELVREAIRREL--LRGGQVF 664 (926)
T ss_pred -------------------------HHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHHHHHHHHHHH--HcCCeEE
Confidence 11100011223333332221 112444444322211111222222 2467999
Q ss_pred EEeCChHHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 491 VFCTSIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|||++++.++.++..|+.. +++|..+||+|++.+|.+++.+|++|..+
T Consensus 665 if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ 714 (926)
T TIGR00580 665 YVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ 714 (926)
T ss_pred EEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999985 78999999999999999999999998754
No 52
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=8e-29 Score=235.12 Aligned_cols=185 Identities=49% Similarity=0.799 Sum_probs=166.5
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 009003 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEA 256 (547)
Q Consensus 177 f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~ 256 (547)
|+++++++.+.+.+..+|+..|+++|.++++.++ +|+++++++|||+|||++|++|+++++...+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 6788999999999999999999999999999998 6999999999999999999999999886542
Q ss_pred hhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCc
Q 009003 257 EKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHL 336 (547)
Q Consensus 257 ~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~ 336 (547)
...++++||++||++|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|..++.+..
T Consensus 66 ----~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--- 138 (203)
T cd00268 66 ----KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--- 138 (203)
T ss_pred ----ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---
Confidence 1246899999999999999999999998888899999999998877766677789999999999999886543
Q ss_pred ccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 337 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 337 ~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
..+..++++|+||||.+.+.++...+..++..++ ..+|+++||||++
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~------------------------~~~~~~~~SAT~~ 185 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP------------------------KDRQTLLFSATMP 185 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCC------------------------cccEEEEEeccCC
Confidence 6788999999999999998889999999999887 5789999999998
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=2.2e-28 Score=279.54 Aligned_cols=265 Identities=19% Similarity=0.206 Sum_probs=191.6
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHhc-----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009003 184 PLLMKSIYRLQFKEPTPIQKACIPAAAHQ-----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEK 258 (547)
Q Consensus 184 ~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~-----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~ 258 (547)
....+....++| .||++|.++|+.++.. .+|+|+||+||||||.+|+.+++..+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------------- 647 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------------- 647 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------------------
Confidence 334555567888 7999999999999842 289999999999999999888776542
Q ss_pred cCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHHHHHHhcCCC
Q 009003 259 YAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 259 ~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
.+.+++||+||++||.|+++.|.......++++.+++|+.+...+...+. ..++|+|+||+.+ ..
T Consensus 648 ----~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~--- 716 (1147)
T PRK10689 648 ----NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS--- 716 (1147)
T ss_pred ----cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---
Confidence 24689999999999999999999888878899999999888776655443 4689999999643 22
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
.+.+.++.+|||||+|++. +. + ...+..++ ..+|+++||||+.+..
T Consensus 717 -~v~~~~L~lLVIDEahrfG---~~-~-~e~lk~l~------------------------~~~qvLl~SATpiprt---- 762 (1147)
T PRK10689 717 -DVKWKDLGLLIVDEEHRFG---VR-H-KERIKAMR------------------------ADVDILTLTATPIPRT---- 762 (1147)
T ss_pred -CCCHhhCCEEEEechhhcc---hh-H-HHHHHhcC------------------------CCCcEEEEcCCCCHHH----
Confidence 1557899999999999973 22 2 33445554 5689999999976211
Q ss_pred HhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcccc-chHHHHHHHHHhcCCCcEEEEe
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-DKDAYLYYILSVHGQGRTIVFC 493 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~k~LVF~ 493 (547)
..++.. ++ .++..+...+.. ...+.+++..+... .+...+..+. .+++++|||
T Consensus 763 -------------------l~l~~~-gl-~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~ 816 (1147)
T PRK10689 763 -------------------LNMAMS-GM-RDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL---RGGQVYYLY 816 (1147)
T ss_pred -------------------HHHHHh-hC-CCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEE
Confidence 111111 11 223333332221 11244444433221 2233333333 367999999
Q ss_pred CChHHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 494 TSIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
|+++.++.++..|... +++|.++||+|++.+|.+++.+|++|..+.
T Consensus 817 n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~V 864 (1147)
T PRK10689 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 (1147)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCE
Confidence 9999999999999987 789999999999999999999999987653
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=5.5e-29 Score=251.16 Aligned_cols=285 Identities=22% Similarity=0.240 Sum_probs=227.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
-...+|.|++.+.+.|...|++.+.|+|..++..-|-.|+|.+++++|+||||+..-++-+..++..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~------------- 260 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG------------- 260 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------------
Confidence 4467889999999999999999999999999987655899999999999999999888877776543
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH----HhcCCCcEEEeChHHHHHHHh
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER----LLKARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~dIlv~TP~~l~~~l~ 330 (547)
+.+.|+|||..+||+|-|+.|+.-...+++.+.+-+|......... ......||||+|.+.+-.+|.
T Consensus 261 ---------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLR 331 (830)
T COG1202 261 ---------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLR 331 (830)
T ss_pred ---------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHH
Confidence 4589999999999999999999888888988887777765544432 222468999999999988886
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
.+ ..+.++..|||||+|.|-+......+.-++.+|..-- ...|+|.+|||+.++.
T Consensus 332 tg----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~---------------------~~AQ~i~LSATVgNp~ 386 (830)
T COG1202 332 TG----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF---------------------PGAQFIYLSATVGNPE 386 (830)
T ss_pred cC----CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC---------------------CCCeEEEEEeecCChH
Confidence 65 6789999999999999876556556655555543110 3579999999999887
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc-ccchHHHHHHHHHhc-----
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK-EEDKDAYLYYILSVH----- 484 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~----- 484 (547)
++++.|....+.+ .. .+. .+..+.+.|. ..+|...+..+.+..
T Consensus 387 elA~~l~a~lV~y----------------------------~~--RPV-plErHlvf~~~e~eK~~ii~~L~k~E~~~~s 435 (830)
T COG1202 387 ELAKKLGAKLVLY----------------------------DE--RPV-PLERHLVFARNESEKWDIIARLVKREFSTES 435 (830)
T ss_pred HHHHHhCCeeEee----------------------------cC--CCC-ChhHeeeeecCchHHHHHHHHHHHHHHhhhh
Confidence 7777764322111 10 111 1445556665 678888888887632
Q ss_pred ---CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 485 ---GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 485 ---~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
-.|.||||++|++.|+.|+..|...|+++..||++|+..+|..+...|.++..
T Consensus 436 skg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l 491 (830)
T COG1202 436 SKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL 491 (830)
T ss_pred ccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc
Confidence 25899999999999999999999999999999999999999999999988653
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=1.4e-28 Score=282.52 Aligned_cols=278 Identities=21% Similarity=0.213 Sum_probs=178.3
Q ss_pred EEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhh---------
Q 009003 218 GAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA--------- 288 (547)
Q Consensus 218 i~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~--------- 288 (547)
|+||||||||++|.||+|+.++...... ........++++|||+|+++|+.|+++.++...
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~----------~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~ 70 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGED----------TREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRR 70 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccc----------ccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5899999999999999999987531000 000011235899999999999999999987522
Q ss_pred ---cCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHH
Q 009003 289 ---KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365 (547)
Q Consensus 289 ---~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i 365 (547)
...++++..++|+++...+...+.+.++|||+||++|..+|.+. ....|+++++|||||+|.|++..+..++..+
T Consensus 71 ~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 71 RGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred cccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 13478999999999998887778888999999999998887642 2346899999999999999865555555444
Q ss_pred HHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCc
Q 009003 366 IDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRAN 445 (547)
Q Consensus 366 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 445 (547)
+.+|... ...+.|+|+||||+++..++.+||.... +..+...+... ..+
T Consensus 149 LeRL~~l--------------------~~~~~QrIgLSATI~n~eevA~~L~g~~---pv~Iv~~~~~r--------~~~ 197 (1490)
T PRK09751 149 LERLDAL--------------------LHTSAQRIGLSATVRSASDVAAFLGGDR---PVTVVNPPAMR--------HPQ 197 (1490)
T ss_pred HHHHHHh--------------------CCCCCeEEEEEeeCCCHHHHHHHhcCCC---CEEEECCCCCc--------ccc
Confidence 4443210 0156799999999998777887774311 00000000000 000
Q ss_pred eeE-EeccccccccccceEEEE--Ec--cccchHHHHHHHHH-hcCCCcEEEEeCChHHHHHHHHHHHHcC---------
Q 009003 446 VAI-VDLTNMCVLANKLEESFI--EC--KEEDKDAYLYYILS-VHGQGRTIVFCTSIAALRHISSLLKILG--------- 510 (547)
Q Consensus 446 ~~~-i~~~~~~~~~~~i~~~~~--~~--~~~~k~~~l~~ll~-~~~~~k~LVF~~s~~~a~~L~~~L~~~g--------- 510 (547)
..+ +................. .. .......+...++. .....++||||||+..|+.++..|+...
T Consensus 198 l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~ 277 (1490)
T PRK09751 198 IRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPS 277 (1490)
T ss_pred eEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhcccccc
Confidence 000 000000000000000000 00 00000011112222 1235789999999999999999997641
Q ss_pred ------------------------CceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 511 ------------------------IDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 511 ------------------------~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+.+..+||+|++.+|..+++.|++|..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~Lr 329 (1490)
T PRK09751 278 IAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELR 329 (1490)
T ss_pred ccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCce
Confidence 1267899999999999999999999765
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=1.7e-27 Score=263.18 Aligned_cols=263 Identities=21% Similarity=0.264 Sum_probs=182.5
Q ss_pred HHHHH-HHHHcCCCCCcHHHHHHHHHHHhcC------CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 009003 184 PLLMK-SIYRLQFKEPTPIQKACIPAAAHQG------KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEA 256 (547)
Q Consensus 184 ~~l~~-~l~~~~~~~~~~iQ~~~i~~~l~~~------~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~ 256 (547)
..+.+ .+..++| .||++|.++|+.++. + .++|++|+||||||++|++|+++.+.
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~-d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------------- 308 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILA-DLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------------- 308 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHH-hhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------------
Confidence 34444 4455777 799999999999974 4 48999999999999999999998762
Q ss_pred hhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH---Hhc-CCCcEEEeChHHHHHHHhcC
Q 009003 257 EKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER---LLK-ARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 257 ~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~-~~~dIlv~TP~~l~~~l~~~ 332 (547)
.+.+++||+||++||.|+++.+..++..+++++.+++|+........ .+. ..++|+|+||+.+..
T Consensus 309 ------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----- 377 (681)
T PRK10917 309 ------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----- 377 (681)
T ss_pred ------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----
Confidence 25689999999999999999999999999999999999998654433 233 369999999987742
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
.+.+.++.+|||||+|++... . ...+.... ..+++++||||+..
T Consensus 378 ---~v~~~~l~lvVIDE~Hrfg~~-q----r~~l~~~~------------------------~~~~iL~~SATp~p---- 421 (681)
T PRK10917 378 ---DVEFHNLGLVIIDEQHRFGVE-Q----RLALREKG------------------------ENPHVLVMTATPIP---- 421 (681)
T ss_pred ---cchhcccceEEEechhhhhHH-H----HHHHHhcC------------------------CCCCEEEEeCCCCH----
Confidence 245789999999999987421 1 12222222 34689999999752
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHH-h-cCCCcEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILS-V-HGQGRTI 490 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~-~~~~k~L 490 (547)
..+........+...++..+.. ...+...++.. ..+ ..++..+. . ...++++
T Consensus 422 ---------------------rtl~~~~~g~~~~s~i~~~p~~--r~~i~~~~~~~--~~~-~~~~~~i~~~~~~g~q~~ 475 (681)
T PRK10917 422 ---------------------RTLAMTAYGDLDVSVIDELPPG--RKPITTVVIPD--SRR-DEVYERIREEIAKGRQAY 475 (681)
T ss_pred ---------------------HHHHHHHcCCCceEEEecCCCC--CCCcEEEEeCc--ccH-HHHHHHHHHHHHcCCcEE
Confidence 1111111111122222221111 11233333322 222 22223332 1 2467999
Q ss_pred EEeCCh--------HHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 491 VFCTSI--------AALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 491 VF~~s~--------~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|||+++ ..+..+++.|... +++|..+||+|++.+|.+++++|++|..+
T Consensus 476 v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 533 (681)
T PRK10917 476 VVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID 533 (681)
T ss_pred EEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 999965 4556778888765 57899999999999999999999998654
No 57
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=7.3e-29 Score=242.34 Aligned_cols=320 Identities=28% Similarity=0.382 Sum_probs=236.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh-
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG- 253 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~- 253 (547)
..|+++++-|.+-.+..++.+.-||.+|.++||.++ .|.||+..|.||||||-+|.+|+|+-++++......-....+
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplil-gggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~ 80 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLIL-GGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEe-cCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCc
Confidence 468899999999999999999999999999999998 799999999999999999999999999877542111100000
Q ss_pred --------------------------------------------------------------------------------
Q 009003 254 -------------------------------------------------------------------------------- 253 (547)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (547)
T Consensus 81 ~~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349|consen 81 MADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTG 160 (725)
T ss_pred ccCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 009003 254 -------------------------------------------------------------------------------- 253 (547)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (547)
T Consensus 161 ~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fN 240 (725)
T KOG0349|consen 161 LDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFN 240 (725)
T ss_pred ccccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEe
Confidence
Q ss_pred -----------------------------------hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhh---cCCCcEE
Q 009003 254 -----------------------------------EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA---KGINVRV 295 (547)
Q Consensus 254 -----------------------------------~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~---~~~~~~v 295 (547)
......+....|.+||+-|+|+||.|+++.+.++- ..-.++.
T Consensus 241 FG~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~ 320 (725)
T KOG0349|consen 241 FGSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRS 320 (725)
T ss_pred cCCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhh
Confidence 00001111346899999999999999999666553 3445677
Q ss_pred EEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCC
Q 009003 296 VPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGS 375 (547)
Q Consensus 296 ~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~ 375 (547)
.++.||.....|...+.++.+|+|+||+||.+.++.+ .+.|+.++++|+||||.++..++-+.|.++...+|..-..
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd 397 (725)
T KOG0349|consen 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD 397 (725)
T ss_pred hhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC
Confidence 7888999999999999999999999999999999665 5789999999999999999889999999999888742111
Q ss_pred CCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccc
Q 009003 376 NKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMC 455 (547)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~ 455 (547)
. ...|.+++|||+.--. +..+..+. ..-+..+++....
T Consensus 398 g------------------~rlq~~vCsatlh~fe----------------------Vkk~~erv--mhfptwVdLkgeD 435 (725)
T KOG0349|consen 398 G------------------FRLQSPVCSATLHIFE----------------------VKKVGERV--MHFPTWVDLKGED 435 (725)
T ss_pred C------------------cccccceeeeEEeEEE----------------------eeehhhhh--ccCceeEeccccc
Confidence 1 4679999999987211 11122111 1112233333333
Q ss_pred cccccceEEEEEccc----------------------------------cch-----HHHHHHHHHhcCCCcEEEEeCCh
Q 009003 456 VLANKLEESFIECKE----------------------------------EDK-----DAYLYYILSVHGQGRTIVFCTSI 496 (547)
Q Consensus 456 ~~~~~i~~~~~~~~~----------------------------------~~k-----~~~l~~ll~~~~~~k~LVF~~s~ 496 (547)
..+.++.|....+.. +.. -++-...++.+...++||||.|+
T Consensus 436 ~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk 515 (725)
T KOG0349|consen 436 LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTK 515 (725)
T ss_pred ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEecc
Confidence 333333333221100 011 11223334566778999999999
Q ss_pred HHHHHHHHHHHHcC---CceEEecCCcCHHHHHHHHHHHHhhhhcCC
Q 009003 497 AALRHISSLLKILG---IDVWTLHAQMQQRARLKLFSQMITWIRKRP 540 (547)
Q Consensus 497 ~~a~~L~~~L~~~g---~~v~~lhg~m~~~eR~~il~~F~~~~~k~~ 540 (547)
..|..|..+|++.| +.|.++||+..+.+|.+.++.|+.+..+..
T Consensus 516 ~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkfl 562 (725)
T KOG0349|consen 516 QDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFL 562 (725)
T ss_pred ccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEE
Confidence 99999999999874 689999999999999999999999988743
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=263.60 Aligned_cols=290 Identities=20% Similarity=0.225 Sum_probs=218.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
....+..++...|+..|+.+|.+|+..+. +|++|||+.+||||||.+|++||++++++..
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~-~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------------------- 114 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIR-EGRNVVVTTGTGSGKTESFLLPILDHLLRDP------------------- 114 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHH-CCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------------------
Confidence 44556888899999999999999998885 8999999999999999999999999997653
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHHhhcCCC--cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH-HHhcCCCCccc
Q 009003 262 KGHLRALIITPTRELALQVTDHLKGVAKGIN--VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE-LMSGGEKHLVE 338 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~-~l~~~~~~~~~ 338 (547)
.-++|+|.||++||+.+.+.|.++...++ +.+..+.|.+.....+..+.+.++||++||.+|.. +|.+...+.+.
T Consensus 115 --~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~ 192 (851)
T COG1205 115 --SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWL 192 (851)
T ss_pred --CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHH
Confidence 12799999999999999999999998887 88888999999988888889999999999999987 55555666677
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 418 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 418 (547)
++++++|||||+|..- -.+.++|..++++|.. +-.......|+|+.|||+.++.++...+..
T Consensus 193 ~~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~-----------------~~~~~~~~~q~i~~SAT~~np~e~~~~l~~ 254 (851)
T COG1205 193 LRNLKYLVVDELHTYR-GVQGSEVALLLRRLLR-----------------RLRRYGSPLQIICTSATLANPGEFAEELFG 254 (851)
T ss_pred HhcCcEEEEecceecc-ccchhHHHHHHHHHHH-----------------HHhccCCCceEEEEeccccChHHHHHHhcC
Confidence 9999999999999874 4456666666555431 011111568999999999988888877754
Q ss_pred cccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc---------ccchHHHHHHHHHh--cCCC
Q 009003 419 GSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK---------EEDKDAYLYYILSV--HGQG 487 (547)
Q Consensus 419 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~--~~~~ 487 (547)
..+.... .....+....+++...+ .......+..+... ...-
T Consensus 255 ~~f~~~v---------------------------~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~ 307 (851)
T COG1205 255 RDFEVPV---------------------------DEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGI 307 (851)
T ss_pred Ccceeec---------------------------cCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCc
Confidence 3322210 01111111222222222 11223333333332 2467
Q ss_pred cEEEEeCChHHHHHHH----HHHHHcC----CceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 488 RTIVFCTSIAALRHIS----SLLKILG----IDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 488 k~LVF~~s~~~a~~L~----~~L~~~g----~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++||||.++..++.++ ..+...+ ..+..++|+|...+|.++...|++|..+
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 9999999999999997 5555555 6799999999999999999999998653
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=262.70 Aligned_cols=283 Identities=20% Similarity=0.188 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcC
Q 009003 181 RLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYA 260 (547)
Q Consensus 181 ~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~ 260 (547)
.+...+..-+...++..+.+-|+.++...+..++|+|+|+|||||||+.+++.+++.+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------------- 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------------- 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------------------
Confidence 3677788888888888888888888877766689999999999999999999999988653
Q ss_pred CCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 261 ~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
+.++|+|||+++||.+++++|. ....+|++|...+|+...... ...+++|+|+||+++-.++.+.. ..+.
T Consensus 76 ---~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~---~~~~ 145 (766)
T COG1204 76 ---GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRP---SWIE 145 (766)
T ss_pred ---CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCc---chhh
Confidence 3589999999999999999999 446679999999999875442 33578999999999988886543 3678
Q ss_pred CccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcc
Q 009003 341 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 420 (547)
Q Consensus 341 ~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 420 (547)
.+++|||||+|.+.+......++.|+..++..+ ...|++++|||+++..+++.||....
T Consensus 146 ~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~---------------------~~~rivgLSATlpN~~evA~wL~a~~ 204 (766)
T COG1204 146 EVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN---------------------ELIRIVGLSATLPNAEEVADWLNAKL 204 (766)
T ss_pred cccEEEEeeeeecCCcccCceehhHHHHHHhhC---------------------cceEEEEEeeecCCHHHHHHHhCCcc
Confidence 999999999999987767778888887766321 33799999999999999999997654
Q ss_pred cccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcccc-------chHHHHHHHHHhc-CCCcEEEE
Q 009003 421 LKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-------DKDAYLYYILSVH-GQGRTIVF 492 (547)
Q Consensus 421 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-------~k~~~l~~ll~~~-~~~k~LVF 492 (547)
........ +..- . .+ ..+.+...... .....+...+... .++.+|||
T Consensus 205 ~~~~~rp~-----------------~l~~----~--v~--~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvF 259 (766)
T COG1204 205 VESDWRPV-----------------PLRR----G--VP--YVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVF 259 (766)
T ss_pred cccCCCCc-----------------cccc----C--Cc--cceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 43222111 1000 0 00 11112222211 1233333333332 57899999
Q ss_pred eCChHHHHHHHHHHHHc-------------------------------------CCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 493 CTSIAALRHISSLLKIL-------------------------------------GIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~-------------------------------------g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
|+|++.+...+..|+.. -..+.++|++|+..+|.-+.+.|+.|
T Consensus 260 v~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g 339 (766)
T COG1204 260 VHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG 339 (766)
T ss_pred EecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC
Confidence 99999999998888720 12467899999999999999999999
Q ss_pred hhc
Q 009003 536 IRK 538 (547)
Q Consensus 536 ~~k 538 (547)
..+
T Consensus 340 ~ik 342 (766)
T COG1204 340 KIK 342 (766)
T ss_pred Cce
Confidence 876
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=7.9e-27 Score=256.17 Aligned_cols=267 Identities=21% Similarity=0.271 Sum_probs=183.6
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHhc-----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009003 184 PLLMKSIYRLQFKEPTPIQKACIPAAAHQ-----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEK 258 (547)
Q Consensus 184 ~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~-----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~ 258 (547)
..+.+.+..++| .||++|..+|+.++.. ..+++++|+||||||++|++|++..+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------------- 282 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------------- 282 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 345566677899 7999999999999742 136899999999999999999998762
Q ss_pred cCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH---h-cCCCcEEEeChHHHHHHHhcCCC
Q 009003 259 YAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL---L-KARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 259 ~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~-~~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
.+.+++||+||++||.|+++.+.+++...++++.+++|+......... + ...++|+|+||+.+..
T Consensus 283 ----~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------- 351 (630)
T TIGR00643 283 ----AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------- 351 (630)
T ss_pred ----cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------
Confidence 246899999999999999999999999899999999999887653332 2 3468999999988753
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
.+.+.++.+|||||+|++... ....++...... ..+++++||||+.+.. +..
T Consensus 352 -~~~~~~l~lvVIDEaH~fg~~----qr~~l~~~~~~~----------------------~~~~~l~~SATp~prt-l~l 403 (630)
T TIGR00643 352 -KVEFKRLALVIIDEQHRFGVE----QRKKLREKGQGG----------------------FTPHVLVMSATPIPRT-LAL 403 (630)
T ss_pred -cccccccceEEEechhhccHH----HHHHHHHhcccC----------------------CCCCEEEEeCCCCcHH-HHH
Confidence 145789999999999986421 222233222100 2468999999975211 000
Q ss_pred HhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh--cCCCcEEEE
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV--HGQGRTIVF 492 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~LVF 492 (547)
.+ ++ ..+...+...+.. ...+...++. ...+ ..++..+.. ..+.+++||
T Consensus 404 ~~-----------------------~~-~l~~~~i~~~p~~--r~~i~~~~~~--~~~~-~~~~~~i~~~l~~g~q~~v~ 454 (630)
T TIGR00643 404 TV-----------------------YG-DLDTSIIDELPPG--RKPITTVLIK--HDEK-DIVYEFIEEEIAKGRQAYVV 454 (630)
T ss_pred Hh-----------------------cC-CcceeeeccCCCC--CCceEEEEeC--cchH-HHHHHHHHHHHHhCCcEEEE
Confidence 00 00 0011111111110 1112232322 2222 333333332 246789999
Q ss_pred eCCh--------HHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSI--------AALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~--------~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+.+ ..+..++..|... ++.|..+||+|++.+|..++++|++|..+
T Consensus 455 ~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 510 (630)
T TIGR00643 455 YPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD 510 (630)
T ss_pred EccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 9976 4566778888763 78999999999999999999999998765
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=3e-26 Score=254.26 Aligned_cols=241 Identities=18% Similarity=0.200 Sum_probs=174.2
Q ss_pred HHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH-Hh
Q 009003 209 AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK-GV 287 (547)
Q Consensus 209 ~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~-~~ 287 (547)
.+.+++++|++|+||||||.+|.+++++... .++++||+.|||++|.|+++.+. .+
T Consensus 13 ~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qiA~rva~~~ 69 (819)
T TIGR01970 13 ALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------------------IGGKIIMLEPRRLAARSAAQRLASQL 69 (819)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------------------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999987641 13589999999999999999985 44
Q ss_pred hcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch-hhhcCChH-HHHHH
Q 009003 288 AKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGHFR-ELQSI 365 (547)
Q Consensus 288 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~-ll~~~~~~-~l~~i 365 (547)
...++..|+..+++.. ....+++|+|+|||+|++++.++ ..|+++++|||||||. +++..+.- .+..+
T Consensus 70 ~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i 139 (819)
T TIGR01970 70 GEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDV 139 (819)
T ss_pred CCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHH
Confidence 4455666665554422 24456899999999999998653 5799999999999995 66555432 33455
Q ss_pred HHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCc
Q 009003 366 IDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRAN 445 (547)
Q Consensus 366 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 445 (547)
...++ ...|+|+||||+... .+... + .+
T Consensus 140 ~~~lr------------------------~dlqlIlmSATl~~~-------------------------~l~~~--l-~~ 167 (819)
T TIGR01970 140 QSSLR------------------------EDLKILAMSATLDGE-------------------------RLSSL--L-PD 167 (819)
T ss_pred HHhcC------------------------CCceEEEEeCCCCHH-------------------------HHHHH--c-CC
Confidence 55555 568999999999721 11111 1 12
Q ss_pred eeEEeccccccccccceEEEEEccccchH-----HHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH---cCCceEEec
Q 009003 446 VAIVDLTNMCVLANKLEESFIECKEEDKD-----AYLYYILSVHGQGRTIVFCTSIAALRHISSLLKI---LGIDVWTLH 517 (547)
Q Consensus 446 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~---~g~~v~~lh 517 (547)
..++....... .+.++|..+....+. ..+..++.. ..+.+||||+++.+++.++..|+. .++.+..+|
T Consensus 168 ~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLH 243 (819)
T TIGR01970 168 APVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLY 243 (819)
T ss_pred CcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 22233322211 245666655433332 234444443 368999999999999999999987 478999999
Q ss_pred CCcCHHHHHHHHHHHHhhhhc
Q 009003 518 AQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 518 g~m~~~eR~~il~~F~~~~~k 538 (547)
|+|++.+|.++++.|++|.++
T Consensus 244 g~L~~~eq~~~~~~~~~G~rk 264 (819)
T TIGR01970 244 GELSLAAQDRAIKPDPQGRRK 264 (819)
T ss_pred CCCCHHHHHHHHhhcccCCeE
Confidence 999999999999999998765
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.95 E-value=2.8e-26 Score=255.08 Aligned_cols=240 Identities=17% Similarity=0.181 Sum_probs=173.6
Q ss_pred HhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH-Hhh
Q 009003 210 AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK-GVA 288 (547)
Q Consensus 210 l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~-~~~ 288 (547)
+.++++++++|+||||||.+|.+|+++.. ...+++||++|||++|.|+++.+. .+.
T Consensus 17 l~~~~~vvv~A~TGSGKTt~~pl~lL~~~-----------------------~~~~~ilvlqPrR~aA~qia~rva~~l~ 73 (812)
T PRK11664 17 LKTAPQVLLKAPTGAGKSTWLPLQLLQHG-----------------------GINGKIIMLEPRRLAARNVAQRLAEQLG 73 (812)
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHHcC-----------------------CcCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 34789999999999999999999988642 112489999999999999999985 445
Q ss_pred cCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh-hhcCC-hHHHHHHH
Q 009003 289 KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM-IENGH-FRELQSII 366 (547)
Q Consensus 289 ~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l-l~~~~-~~~l~~i~ 366 (547)
..++..|+..+++... ....++|+|+|||+|++++..+ ..|+++++|||||||.. ++..+ ...+..++
T Consensus 74 ~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~ 143 (812)
T PRK11664 74 EKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQ 143 (812)
T ss_pred cccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHH
Confidence 5667777777665432 2345789999999999998653 57999999999999973 33222 23344555
Q ss_pred HhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCce
Q 009003 367 DMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANV 446 (547)
Q Consensus 367 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 446 (547)
..++ ...|+|+||||+... . +... ..+.
T Consensus 144 ~~lr------------------------~~lqlilmSATl~~~-~------------------------l~~~---~~~~ 171 (812)
T PRK11664 144 QGLR------------------------DDLKLLIMSATLDND-R------------------------LQQL---LPDA 171 (812)
T ss_pred HhCC------------------------ccceEEEEecCCCHH-H------------------------HHHh---cCCC
Confidence 5555 568999999999721 1 1111 1122
Q ss_pred eEEeccccccccccceEEEEEccccchHH-----HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH---cCCceEEecC
Q 009003 447 AIVDLTNMCVLANKLEESFIECKEEDKDA-----YLYYILSVHGQGRTIVFCTSIAALRHISSLLKI---LGIDVWTLHA 518 (547)
Q Consensus 447 ~~i~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~---~g~~v~~lhg 518 (547)
.++....... .+.++|+.+....+.. .+..++.. ..+.+||||+++.+++.++..|.. .++.+..+||
T Consensus 172 ~~I~~~gr~~---pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg 247 (812)
T PRK11664 172 PVIVSEGRSF---PVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYG 247 (812)
T ss_pred CEEEecCccc---cceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeC
Confidence 2233222211 2556666555444432 34444443 368999999999999999999987 5788999999
Q ss_pred CcCHHHHHHHHHHHHhhhhc
Q 009003 519 QMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 519 ~m~~~eR~~il~~F~~~~~k 538 (547)
+|++.+|.+++..|++|.++
T Consensus 248 ~l~~~eq~~~~~~~~~G~rk 267 (812)
T PRK11664 248 ALSLAEQQKAILPAPAGRRK 267 (812)
T ss_pred CCCHHHHHHHhccccCCCeE
Confidence 99999999999999988765
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=5.7e-26 Score=243.32 Aligned_cols=274 Identities=16% Similarity=0.102 Sum_probs=176.3
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..|+++|.++++.++ .++++++++|||+|||+++.+. ...+... ...++||||||++
T Consensus 113 ~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l-~~~~~~~---------------------~~~~vLilvpt~e 169 (501)
T PHA02558 113 IEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLL-SRYYLEN---------------------YEGKVLIIVPTTS 169 (501)
T ss_pred CCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHH-HHHHHhc---------------------CCCeEEEEECcHH
Confidence 489999999999998 5788999999999999875432 2221111 1348999999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 276 La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
|+.|+.+.+.+++......+..+.+|.... ...+|+|+||++|..... ..+..+++|||||||++..
T Consensus 170 L~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~ 236 (501)
T PHA02558 170 LVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG 236 (501)
T ss_pred HHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc
Confidence 999999999988654445555666665332 347899999999875431 2467899999999999964
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHH
Q 009003 356 NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIET 435 (547)
Q Consensus 356 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ 435 (547)
..+..++..++ ..+++++||||+.........+. +.+..... .-....
T Consensus 237 ----~~~~~il~~~~------------------------~~~~~lGLTATp~~~~~~~~~~~-~~fG~i~~---~v~~~~ 284 (501)
T PHA02558 237 ----KSLTSIITKLD------------------------NCKFKFGLTGSLRDGKANILQYV-GLFGDIFK---PVTTSQ 284 (501)
T ss_pred ----hhHHHHHHhhh------------------------ccceEEEEeccCCCccccHHHHH-HhhCCceE---EecHHH
Confidence 34566666665 45789999999864321111110 00000000 011222
Q ss_pred HHHHhcccCcee--EEeccccccccccc-----eE-EEEEccccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHH
Q 009003 436 LSERAGMRANVA--IVDLTNMCVLANKL-----EE-SFIECKEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSL 505 (547)
Q Consensus 436 l~~~~~~~~~~~--~i~~~~~~~~~~~i-----~~-~~~~~~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~ 505 (547)
+... +....+. .+...........+ .. ....+....+...+..++... .+.++||||+++++++.|++.
T Consensus 285 li~~-g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~ 363 (501)
T PHA02558 285 LMEE-GQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEM 363 (501)
T ss_pred HHhC-CCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHH
Confidence 2221 1111111 11111000000000 00 001122334555555554422 357899999999999999999
Q ss_pred HHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 506 LKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 506 L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+..|+++..+||+|++.+|..+++.|+++...
T Consensus 364 L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~ 396 (501)
T PHA02558 364 LKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGI 396 (501)
T ss_pred HHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCe
Confidence 999999999999999999999999999987643
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=1.2e-25 Score=243.87 Aligned_cols=256 Identities=16% Similarity=0.099 Sum_probs=170.6
Q ss_pred cHHHHHHHHHHHhcCCcEEEEccCCChhhHH---------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEE
Q 009003 199 TPIQKACIPAAAHQGKDVIGAAETGSGKTLA---------FGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALI 269 (547)
Q Consensus 199 ~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~---------~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 269 (547)
..+|.++++.++ .++++|++|+||||||.+ |++|.+..+... .......+++|
T Consensus 166 ~~iQ~qil~~i~-~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~-----------------~~~~~~~~ilv 227 (675)
T PHA02653 166 PDVQLKIFEAWI-SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI-----------------DPNFIERPIVL 227 (675)
T ss_pred HHHHHHHHHHHH-hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc-----------------ccccCCcEEEE
Confidence 358999999997 799999999999999976 334444433110 01223468999
Q ss_pred EccCHHHHHHHHHHHHHhhcC---CCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEE
Q 009003 270 ITPTRELALQVTDHLKGVAKG---INVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346 (547)
Q Consensus 270 l~Ptr~La~qv~~~l~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lV 346 (547)
++|||+||.|+...+...... .+..+.+.+|+... .+........+|+|+|++... ..|+.+++||
T Consensus 228 t~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l----------~~L~~v~~VV 296 (675)
T PHA02653 228 SLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL----------NKLFDYGTVI 296 (675)
T ss_pred ECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc----------cccccCCEEE
Confidence 999999999999999876543 35677888999873 222333336799999976311 3578999999
Q ss_pred EeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccc
Q 009003 347 LDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQS 426 (547)
Q Consensus 347 iDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~ 426 (547)
|||||++..++ +.+..++..+.. ..+|+++||||++..
T Consensus 297 IDEaHEr~~~~--DllL~llk~~~~-----------------------~~rq~ILmSATl~~d----------------- 334 (675)
T PHA02653 297 IDEVHEHDQIG--DIIIAVARKHID-----------------------KIRSLFLMTATLEDD----------------- 334 (675)
T ss_pred ccccccCccch--hHHHHHHHHhhh-----------------------hcCEEEEEccCCcHh-----------------
Confidence 99999997654 455556554421 335999999999722
Q ss_pred cCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc----------ccchHHHHHHHHHh--cCCCcEEEEeC
Q 009003 427 VNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK----------EEDKDAYLYYILSV--HGQGRTIVFCT 494 (547)
Q Consensus 427 ~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~----------~~~k~~~l~~ll~~--~~~~k~LVF~~ 494 (547)
+..+.. + ..++..+..... ....++++|+... ...+...+..+... ...+.+||||+
T Consensus 335 ------v~~l~~-~--~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlp 403 (675)
T PHA02653 335 ------RDRIKE-F--FPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVA 403 (675)
T ss_pred ------HHHHHH-H--hcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEEC
Confidence 222221 1 123333333321 1223556655332 11222233333222 23578999999
Q ss_pred ChHHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHH-Hhhhhc
Q 009003 495 SIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQM-ITWIRK 538 (547)
Q Consensus 495 s~~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F-~~~~~k 538 (547)
++.+|+.++..|... ++.+..+||+|++. .+++++| ++|.++
T Consensus 404 g~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~k 448 (675)
T PHA02653 404 SVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPS 448 (675)
T ss_pred cHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCcee
Confidence 999999999999987 79999999999975 5677777 566544
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=7.6e-26 Score=233.74 Aligned_cols=249 Identities=18% Similarity=0.153 Sum_probs=158.0
Q ss_pred cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcE
Q 009003 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~ 294 (547)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------------------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~ 56 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------------------QKADRVIIALPTRATINAMYRRAKELFGS---N 56 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------------------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---c
Confidence 68999999999999999999977532 22458999999999999999999987432 3
Q ss_pred EEEEEcCCCHH------------HHHHHh-c-----CCCcEEEeChHHHHHHHhcCC-CCcccCC--CccEEEEeccchh
Q 009003 295 VVPIVGGMSTE------------KQERLL-K-----ARPEVVVGTPGRLWELMSGGE-KHLVELH--TLSFFVLDEADRM 353 (547)
Q Consensus 295 v~~~~g~~~~~------------~~~~~~-~-----~~~dIlv~TP~~l~~~l~~~~-~~~~~l~--~l~~lViDEah~l 353 (547)
+..++++.... ...... . ...+|+|+||++++..+.... ...+.+. ..++|||||||.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~ 136 (358)
T TIGR01587 57 LGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFY 136 (358)
T ss_pred cEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCC
Confidence 34444433210 000011 1 136799999999988775421 1111122 2379999999999
Q ss_pred hhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchH
Q 009003 354 IENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSI 433 (547)
Q Consensus 354 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i 433 (547)
.+.++. .+..++..+.. ...|+++||||++ ..+..++.
T Consensus 137 ~~~~~~-~l~~~l~~l~~-----------------------~~~~~i~~SATlp--~~l~~~~~---------------- 174 (358)
T TIGR01587 137 DEYTLA-LILAVLEVLKD-----------------------NDVPILLMSATLP--KFLKEYAE---------------- 174 (358)
T ss_pred CHHHHH-HHHHHHHHHHH-----------------------cCCCEEEEecCch--HHHHHHHh----------------
Confidence 865433 35555555431 3578999999997 22222211
Q ss_pred HHHHHHhcccCceeEEeccccccccccceEEEEEcc--ccchHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC
Q 009003 434 ETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK--EEDKDAYLYYILSVH-GQGRTIVFCTSIAALRHISSLLKILG 510 (547)
Q Consensus 434 ~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~ll~~~-~~~k~LVF~~s~~~a~~L~~~L~~~g 510 (547)
..........+..... .....+.+..+. ...+...+..++... .++++||||+|++.|+.++..|+..+
T Consensus 175 -----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~ 246 (358)
T TIGR01587 175 -----KIGYVEFNEPLDLKEE---RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA 246 (358)
T ss_pred -----cCCCcccccCCCCccc---cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc
Confidence 1100000000000000 000112222221 234556666666543 46899999999999999999998876
Q ss_pred C--ceEEecCCcCHHHHHHH----HHHHHhhhh
Q 009003 511 I--DVWTLHAQMQQRARLKL----FSQMITWIR 537 (547)
Q Consensus 511 ~--~v~~lhg~m~~~eR~~i----l~~F~~~~~ 537 (547)
. .+..+||+|++.+|.++ ++.|+++..
T Consensus 247 ~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~ 279 (358)
T TIGR01587 247 PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK 279 (358)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC
Confidence 6 59999999999999775 788887653
No 66
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=5.2e-26 Score=243.54 Aligned_cols=287 Identities=19% Similarity=0.231 Sum_probs=207.3
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
-++|..+..+|..++|.+.+.+.|+|||||||||||..|+|.||+.+.+.. +.........++++|+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-------------~~~~i~k~~fKiVYIa 171 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-------------EQGDIAKDDFKIVYIA 171 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-------------cccccccCCceEEEEe
Confidence 356788999999999999999999999999999999999999999886511 1123345678999999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC-CcccCCCccEEEEecc
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK-HLVELHTLSFFVLDEA 350 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~-~~~~l~~l~~lViDEa 350 (547)
|+++||..+++.+.+....+|++|.-++|++.....+ ...++|||+||+++ +.+.+.+. ....++.+++|||||+
T Consensus 172 PmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEV 247 (1230)
T KOG0952|consen 172 PMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEV 247 (1230)
T ss_pred chHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeee
Confidence 9999999999999988888999999999998775544 34689999999995 44433211 1233678899999999
Q ss_pred chhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCc
Q 009003 351 DRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGL 430 (547)
Q Consensus 351 h~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~ 430 (547)
|.|- ...+..++.|+.++.. .........++|++|||+|+-.|.+.||+........++
T Consensus 248 HlLh-d~RGpvlEtiVaRtlr-----------------~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsF--- 306 (1230)
T KOG0952|consen 248 HLLH-DDRGPVLETIVARTLR-----------------LVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSF--- 306 (1230)
T ss_pred hhhc-CcccchHHHHHHHHHH-----------------HHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeee---
Confidence 9775 5577888888876541 111222567999999999999999999975422211111
Q ss_pred chHHHHHHHhcccCceeEEeccccccccccceEEEEEcccc---chHHHH-----HHHHHh-cCCCcEEEEeCChHHHHH
Q 009003 431 NSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE---DKDAYL-----YYILSV-HGQGRTIVFCTSIAALRH 501 (547)
Q Consensus 431 ~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~k~~~l-----~~ll~~-~~~~k~LVF~~s~~~a~~ 501 (547)
... ..+-.+.+.++-++.. .+...+ ...+.. ..+..++|||.++..+..
T Consensus 307 ---------------------d~~-yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~ 364 (1230)
T KOG0952|consen 307 ---------------------DQR-YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIR 364 (1230)
T ss_pred ---------------------ccc-ccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHH
Confidence 100 1111134444444333 111111 111221 246799999999999999
Q ss_pred HHHHHHHc----C-------------------CceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 502 ISSLLKIL----G-------------------IDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 502 L~~~L~~~----g-------------------~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.|+.|.+. | ....++|++|...+|.-+...|..|-.+
T Consensus 365 tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~ 424 (1230)
T KOG0952|consen 365 TAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK 424 (1230)
T ss_pred HHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce
Confidence 99888552 1 2467899999999999999999998765
No 67
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2e-25 Score=234.15 Aligned_cols=264 Identities=20% Similarity=0.307 Sum_probs=190.5
Q ss_pred HHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEE
Q 009003 189 SIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRA 267 (547)
Q Consensus 189 ~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (547)
.|.. +||..+++-|.++|..++ +|+|+++..|||+||++||++|++-. ..-+
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~--------------------------~G~T 60 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL--------------------------EGLT 60 (590)
T ss_pred HHHHHhCccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc--------------------------CCCE
Confidence 3443 689999999999999998 79999999999999999999998743 1369
Q ss_pred EEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCCCcc
Q 009003 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELHTLS 343 (547)
Q Consensus 268 lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~ 343 (547)
|||+|..+|+..+++.+... |+.+..+.+..+.......+ ....++++-+|++|..--. ...+.--.+.
T Consensus 61 LVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f---~~~L~~~~i~ 133 (590)
T COG0514 61 LVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRF---LELLKRLPIS 133 (590)
T ss_pred EEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHH---HHHHHhCCCc
Confidence 99999999999999999987 88999898887765544332 3458999999999953210 1113345788
Q ss_pred EEEEeccchhhhcC--C---hHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhh
Q 009003 344 FFVLDEADRMIENG--H---FRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 418 (547)
Q Consensus 344 ~lViDEah~ll~~~--~---~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 418 (547)
++||||||++.+|| | +..+..+...++ ...++++|||-....
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-------------------------~~p~~AlTATA~~~v-------- 180 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-------------------------NPPVLALTATATPRV-------- 180 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCC-------------------------CCCEEEEeCCCChHH--------
Confidence 99999999999998 4 455555666654 457899999977321
Q ss_pred cccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc-ccchHHHHHHHHHhcCCCcEEEEeCChH
Q 009003 419 GSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK-EEDKDAYLYYILSVHGQGRTIVFCTSIA 497 (547)
Q Consensus 419 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~LVF~~s~~ 497 (547)
..++...++......++...+ .++|....+... ...+..++.. +.....+..||||.|++
T Consensus 181 --------------~~DI~~~L~l~~~~~~~~sfd----RpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk 241 (590)
T COG0514 181 --------------RDDIREQLGLQDANIFRGSFD----RPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRK 241 (590)
T ss_pred --------------HHHHHHHhcCCCcceEEecCC----CchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHH
Confidence 223333333333222222111 112211111111 1223332222 12455778999999999
Q ss_pred HHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 498 ALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 498 ~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.++.++..|...|+.+..|||+|+..+|..+.++|..+..+
T Consensus 242 ~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 242 KVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred hHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999987654
No 68
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=1.9e-25 Score=205.27 Aligned_cols=162 Identities=40% Similarity=0.581 Sum_probs=138.0
Q ss_pred cHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHH
Q 009003 199 TPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278 (547)
Q Consensus 199 ~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 278 (547)
||+|.++++.++ ++++++++||||+|||++|++|+++.+.+. ...++||++|+++|+.
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------------------~~~~~lii~P~~~l~~ 58 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG---------------------KDARVLIIVPTRALAE 58 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------------------SSSEEEEEESSHHHHH
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC---------------------CCceEEEEeecccccc
Confidence 799999999998 799999999999999999999999887532 2348999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEEcCCCHH-HHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcC
Q 009003 279 QVTDHLKGVAKGINVRVVPIVGGMSTE-KQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 357 (547)
Q Consensus 279 qv~~~l~~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~ 357 (547)
|+++.+..++...++++..++++.... .....+.++++|+|+||++|..++.... ..+.++++|||||+|.+..++
T Consensus 59 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~ 135 (169)
T PF00270_consen 59 QQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDET 135 (169)
T ss_dssp HHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCccccccccc
Confidence 999999999988889999999998865 4445556789999999999999997632 355669999999999999888
Q ss_pred ChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 358 HFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 358 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
+...+..|+..+... ...|++++|||++
T Consensus 136 ~~~~~~~i~~~~~~~----------------------~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 136 FRAMLKSILRRLKRF----------------------KNIQIILLSATLP 163 (169)
T ss_dssp HHHHHHHHHHHSHTT----------------------TTSEEEEEESSST
T ss_pred HHHHHHHHHHHhcCC----------------------CCCcEEEEeeCCC
Confidence 888899998887421 3578999999987
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.93 E-value=2.8e-24 Score=220.57 Aligned_cols=267 Identities=17% Similarity=0.185 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhcCC--cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHH
Q 009003 201 IQKACIPAAAHQGK--DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278 (547)
Q Consensus 201 iQ~~~i~~~l~~~~--dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 278 (547)
+|.++++.+.. +. .++++||||||||++|++|++.. ..+++|++|+++|+.
T Consensus 1 hQ~~~~~~~~~-~~~~~~~i~apTGsGKT~~~~~~~l~~--------------------------~~~~~~~~P~~aL~~ 53 (357)
T TIGR03158 1 HQVATFEALQS-KDADIIFNTAPTGAGKTLAWLTPLLHG--------------------------ENDTIALYPTNALIE 53 (357)
T ss_pred CHHHHHHHHHc-CCCCEEEEECCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeChHHHHH
Confidence 59999999974 54 37889999999999999998842 236899999999999
Q ss_pred HHHHHHHHhhcCC----CcEEEEEEcCCCHH--HH------------------HHHhcCCCcEEEeChHHHHHHHhcCCC
Q 009003 279 QVTDHLKGVAKGI----NVRVVPIVGGMSTE--KQ------------------ERLLKARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 279 qv~~~l~~~~~~~----~~~v~~~~g~~~~~--~~------------------~~~~~~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
|+++.+..+...+ ++.+..+.|.+... .. .......++|+++||+.|..++.....
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~ 133 (357)
T TIGR03158 54 DQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYI 133 (357)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhcc
Confidence 9999999887533 56666666653222 00 011124688999999999766543211
Q ss_pred C-----cccCCCccEEEEeccchhhhcCCh-----HHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEec
Q 009003 335 H-----LVELHTLSFFVLDEADRMIENGHF-----RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSA 404 (547)
Q Consensus 335 ~-----~~~l~~l~~lViDEah~ll~~~~~-----~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 404 (547)
. ...+.++++|||||+|.+..++.. -....++...+ ...+++++||
T Consensus 134 ~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~------------------------~~~~~i~lSA 189 (357)
T TIGR03158 134 DRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE------------------------CRRKFVFLSA 189 (357)
T ss_pred CcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh------------------------cCCcEEEEec
Confidence 1 112678999999999998643321 12223333222 2368999999
Q ss_pred cCCCChhHHHHhhhcc-ccccc-ccCCcchHHHHHHHhcccCceeEEeccc---cccccccceEEEEEccccchHHHHHH
Q 009003 405 TIALSADFRKKLKHGS-LKSKQ-SVNGLNSIETLSERAGMRANVAIVDLTN---MCVLANKLEESFIECKEEDKDAYLYY 479 (547)
Q Consensus 405 Tl~~~~~~~~~l~~~~-~~~~~-~~~~~~~i~~l~~~~~~~~~~~~i~~~~---~~~~~~~i~~~~~~~~~~~k~~~l~~ 479 (547)
|++ ..+...+.... +..+. .+.+.. +.+..++....... .......+.+.++. ....+...+..
T Consensus 190 T~~--~~~~~~l~~~~~~~~~~~~v~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~ 258 (357)
T TIGR03158 190 TPD--PALILRLQNAKQAGVKIAPIDGEK--------YQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSE 258 (357)
T ss_pred CCC--HHHHHHHHhccccCceeeeecCcc--------cccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHH
Confidence 987 33344333210 00000 000000 00000000000000 00011234454544 33334433333
Q ss_pred HHH-------hcCCCcEEEEeCChHHHHHHHHHHHHcC--CceEEecCCcCHHHHHHHH
Q 009003 480 ILS-------VHGQGRTIVFCTSIAALRHISSLLKILG--IDVWTLHAQMQQRARLKLF 529 (547)
Q Consensus 480 ll~-------~~~~~k~LVF~~s~~~a~~L~~~L~~~g--~~v~~lhg~m~~~eR~~il 529 (547)
++. ..+++++||||+|+..|+.++..|+..+ +.+..+||.|++.+|.++.
T Consensus 259 l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~ 317 (357)
T TIGR03158 259 LAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM 317 (357)
T ss_pred HHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc
Confidence 222 2356799999999999999999999864 5788999999999998754
No 70
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=1.3e-25 Score=224.94 Aligned_cols=319 Identities=16% Similarity=0.213 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccC-CChh--hHHHHHHHHHHHHHHHHHHHhhhhh--------hhhhhhhcCCCCC
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAET-GSGK--TLAFGLPIMQRLLEEREKAAKMLED--------KGEEAEKYAPKGH 264 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~T-GsGK--T~~~~lp~l~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 264 (547)
..+|+.|.+.+..+. +++|+++.-.| +.|+ +..|++++|+|+++.++.+.++++. ..+...++++.++
T Consensus 215 ~pltalQ~~L~~~m~-~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 215 EPLTALQKELFKIMF-NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CcchHHHHHHHHHHH-hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 478999999998886 79999875433 3354 5679999999999999999999887 3456779999999
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCc-EEEE--------EEcC---------CCHHHHHHHhcC-------------
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINV-RVVP--------IVGG---------MSTEKQERLLKA------------- 313 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~-~v~~--------~~g~---------~~~~~~~~~~~~------------- 313 (547)
|+||||||+|+-|.++++.|..+..+..- ++.+ -++| ..+.++...+.+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 99999999999999999999988554321 0000 0111 112223333222
Q ss_pred -----------CCcEEEeChHHHHHHHhcCCCCccc---CCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCC
Q 009003 314 -----------RPEVVVGTPGRLWELMSGGEKHLVE---LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQ 379 (547)
Q Consensus 314 -----------~~dIlv~TP~~l~~~l~~~~~~~~~---l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~ 379 (547)
.+|||||+|..|..++.+...+..+ |++|.++|||.||.|+ +++|+++..|+++|+..|...|++
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccCC
Confidence 3799999999999999854333333 8999999999999998 999999999999999999999999
Q ss_pred CcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHH-hcccCceeEEecccccccc
Q 009003 380 SEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSER-AGMRANVAIVDLTNMCVLA 458 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~i~~~~~~~~~ 458 (547)
+++|+++|+++.+++..+|+|+||+... +.+...+.. .+.+ .|.-....++.........
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~--~~~nS~fn~-----------------~c~N~~Gkv~~~~~~~~gsi~~v~ 513 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSH--PLFNSLFNQ-----------------YCQNMAGKVKARNLQSGGSISNVG 513 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhcc--HHHHHHHHH-----------------hhhhhcceeeeccccCCCchhhcc
Confidence 9999999999999999999999999865 222222110 0000 0000000000000000001
Q ss_pred ccceEEE--EEc-----cccchHHHHHHHH-H---hcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHH
Q 009003 459 NKLEESF--IEC-----KEEDKDAYLYYIL-S---VHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527 (547)
Q Consensus 459 ~~i~~~~--~~~-----~~~~k~~~l~~ll-~---~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~ 527 (547)
..+.|.+ +.| ....++.+...-+ - ......+|||.++--.--++..+|+..++....+|-=.+...-.+
T Consensus 514 ~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsR 593 (698)
T KOG2340|consen 514 IPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSR 593 (698)
T ss_pred chhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhH
Confidence 1111111 111 1234555544332 2 223457899999988888888888887777666665555555555
Q ss_pred HHHHHHhh
Q 009003 528 LFSQMITW 535 (547)
Q Consensus 528 il~~F~~~ 535 (547)
+-+-|-.|
T Consensus 594 AR~lF~qg 601 (698)
T KOG2340|consen 594 ARELFFQG 601 (698)
T ss_pred HHHHHHhc
Confidence 55555554
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=8.1e-24 Score=226.30 Aligned_cols=287 Identities=18% Similarity=0.135 Sum_probs=191.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. .|+++|..++|.++ .|+ |+.+.||+|||++|++|++.... .++.|+||+|
T Consensus 100 lg~-~p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al-----------------------~G~~v~VvTp 152 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAAL-----------------------AGLPVHVITV 152 (656)
T ss_pred hCC-CCChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhh-----------------------cCCeEEEEcC
Confidence 566 89999999999997 677 99999999999999999997652 2568999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC------------------
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE------------------ 333 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~------------------ 333 (547)
|++||.|.++.+..+...+|+++++++|+.+.. ......++||+|+|..-| .++|...-
T Consensus 153 treLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~ 230 (656)
T PRK12898 153 NDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHG 230 (656)
T ss_pred cHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhcc
Confidence 999999999999999999999999999998754 334456789999999988 44553221
Q ss_pred ----CCcccCCCccEEEEeccchhh-hc-----------------CChHHHHHHHHhCCCCC------------------
Q 009003 334 ----KHLVELHTLSFFVLDEADRMI-EN-----------------GHFRELQSIIDMLPMTN------------------ 373 (547)
Q Consensus 334 ----~~~~~l~~l~~lViDEah~ll-~~-----------------~~~~~l~~i~~~l~~~~------------------ 373 (547)
.....+..+.+.||||||.++ |. ..+..+..+...+...-
T Consensus 231 ~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~ 310 (656)
T PRK12898 231 RSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGR 310 (656)
T ss_pred ccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHH
Confidence 011224668899999999975 11 11222333333332110
Q ss_pred ----------CCCCCCC-----------------------------------cc-cc---cccc----------------
Q 009003 374 ----------GSNKGQS-----------------------------------EQ-TQ---NCVT---------------- 388 (547)
Q Consensus 374 ----------~~~~~~~-----------------------------------~~-~~---~~~~---------------- 388 (547)
....... +. +. +.|.
T Consensus 311 ~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~ 390 (656)
T PRK12898 311 ARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELT 390 (656)
T ss_pred HHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCC
Confidence 0000000 00 00 0000
Q ss_pred ----------cccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEecccccccc
Q 009003 389 ----------VSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLA 458 (547)
Q Consensus 389 ----------~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~ 458 (547)
..+..+.-.++.+||||.. .....+...+++. +..+....+. .
T Consensus 391 ~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~-----------------------~~~~El~~~y~l~--vv~IPt~kp~--~ 443 (656)
T PRK12898 391 DPRETLARITYQRFFRRYLRLAGMTGTAR-----------------------EVAGELWSVYGLP--VVRIPTNRPS--Q 443 (656)
T ss_pred cCceeeeeehHHHHHHhhHHHhcccCcCh-----------------------HHHHHHHHHHCCC--eEEeCCCCCc--c
Confidence 1111122235566666665 2234444444443 3333332222 2
Q ss_pred ccceEEEEEccccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 459 NKLEESFIECKEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 459 ~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
....+.++.+....|...|..++... .+.++||||+|+..++.|+..|...|+++..|||.+.+.++.-+..++..+
T Consensus 444 r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g 522 (656)
T PRK12898 444 RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRG 522 (656)
T ss_pred ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCC
Confidence 22445567777778999999888753 257899999999999999999999999999999997765555555444443
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=8.7e-23 Score=231.17 Aligned_cols=164 Identities=24% Similarity=0.273 Sum_probs=125.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
.-.|+++|..++..++. +++|+++|||+|||+++++++++.+.. .+.++|||+||+
T Consensus 13 ~~~~r~yQ~~~~~~~l~--~n~lv~~ptG~GKT~~a~~~i~~~l~~----------------------~~~~vLvl~Pt~ 68 (773)
T PRK13766 13 TIEARLYQQLLAATALK--KNTLVVLPTGLGKTAIALLVIAERLHK----------------------KGGKVLILAPTK 68 (773)
T ss_pred cCCccHHHHHHHHHHhc--CCeEEEcCCCccHHHHHHHHHHHHHHh----------------------CCCeEEEEeCcH
Confidence 34789999999988873 399999999999999999988887621 235899999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 275 ~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
+|+.|+.+.+..+....+..+..++|+...... ..+....+|+|+||+.+...+... .+.+..+++|||||||++.
T Consensus 69 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~ 144 (773)
T PRK13766 69 PLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAV 144 (773)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCcccc
Confidence 999999999998865545678888888877543 334456799999999997766432 3668899999999999986
Q ss_pred hcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 355 ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 355 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
....+..+...+.... ...++++||||+....
T Consensus 145 ~~~~~~~i~~~~~~~~------------------------~~~~il~lTaTP~~~~ 176 (773)
T PRK13766 145 GNYAYVYIAERYHEDA------------------------KNPLVLGLTASPGSDE 176 (773)
T ss_pred ccccHHHHHHHHHhcC------------------------CCCEEEEEEcCCCCCH
Confidence 4433444443333222 3467999999985443
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=9.6e-23 Score=220.52 Aligned_cols=324 Identities=17% Similarity=0.152 Sum_probs=185.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. .|+++|...+..+ +.| .|++++||+|||++|++|++.+.+. +..++||+|
T Consensus 67 lgl-rpydVQlig~l~l-~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----------------------g~~V~VVTp 119 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVL-HQG--NIAEMKTGEGKTLTATMPLYLNALT-----------------------GKGAMLVTT 119 (762)
T ss_pred cCC-CccHHHHHHHHHh-cCC--ceeEecCCcchHHHHHHHHHHHhhc-----------------------CCceEEeCC
Confidence 455 6666666666544 234 7999999999999999998765432 346999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCC---HHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEE
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMS---TEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFF 345 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~---~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~l 345 (547)
|++||.|+++.+..++..+|+.+.+++++.. ..........+++|+++||++| .++|... ......++.+.++
T Consensus 120 n~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~ 199 (762)
T TIGR03714 120 NDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYV 199 (762)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEE
Confidence 9999999999999999999999998887622 2222233346799999999999 4444221 1122447889999
Q ss_pred EEeccchhhhcC----------------ChHHHHHHHHhCCCCC-CCC----CC---CCc--------ccccccccc---
Q 009003 346 VLDEADRMIENG----------------HFRELQSIIDMLPMTN-GSN----KG---QSE--------QTQNCVTVS--- 390 (547)
Q Consensus 346 ViDEah~ll~~~----------------~~~~l~~i~~~l~~~~-~~~----~~---~~~--------~~~~~~~~~--- 390 (547)
||||||.||-.. .+..+..+...|.... ... .. .+. -....++-.
T Consensus 200 IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~ 279 (762)
T TIGR03714 200 IVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYF 279 (762)
T ss_pred EEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhH
Confidence 999999985221 1344445555554210 000 00 000 000000000
Q ss_pred -------------cccCC-------CcEEEEEec-c--CC----CChhHHHHhhh--c-----------------ccccc
Q 009003 391 -------------SLQRK-------KRQTLVFSA-T--IA----LSADFRKKLKH--G-----------------SLKSK 424 (547)
Q Consensus 391 -------------~~~~~-------~~q~i~~SA-T--l~----~~~~~~~~l~~--~-----------------~~~~~ 424 (547)
.+..+ .-+++++-. | +. .+.-+-+.+.. + ++..+
T Consensus 280 ~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y 359 (762)
T TIGR03714 280 ELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMF 359 (762)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhC
Confidence 00000 001111111 1 00 00001000000 0 00000
Q ss_pred cccC---Cc--chHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh--cCCCcEEEEeCChH
Q 009003 425 QSVN---GL--NSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV--HGQGRTIVFCTSIA 497 (547)
Q Consensus 425 ~~~~---~~--~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~LVF~~s~~ 497 (547)
..+. +. ..-.++...++ ..++.++........-..-.+.+....|..++...+.. ..+.++||||+|+.
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY~----l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETYS----LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred chhcccCCCChhHHHHHHHHhC----CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 0111 00 11222332222 22233332221111111124555567788888887764 35779999999999
Q ss_pred HHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh--cCCCCCCCCC
Q 009003 498 ALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR--KRPKGDRGKD 547 (547)
Q Consensus 498 ~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~--k~~~g~~~~~ 547 (547)
.++.|+..|...|+++..+||.+.+.+|..+..+|+.|.. ---..+||.|
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATdmAgRGtD 487 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSMAGRGTD 487 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCCeEEEEccccccccC
Confidence 9999999999999999999999999999998888877632 2223445554
No 74
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.5e-24 Score=224.21 Aligned_cols=255 Identities=18% Similarity=0.160 Sum_probs=179.6
Q ss_pred CCCCcHHHHH-----------HHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCC
Q 009003 195 FKEPTPIQKA-----------CIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKG 263 (547)
Q Consensus 195 ~~~~~~iQ~~-----------~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (547)
+.+|.+||.. -|...++.+.-|||||.|||||| .++| |+||+.+..... ...
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKT--TQvP--QFLYEAGf~s~~-------------~~~ 304 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKT--TQVP--QFLYEAGFASEQ-------------SSS 304 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCcc--ccch--HHHHHcccCCcc-------------CCC
Confidence 4577788863 33445556777899999999999 7888 899887654321 112
Q ss_pred CeEEEEEccCH----HHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTR----ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr----~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+..+-|.-|.| ++|.+|..+|..+...++++| ++...+...+.|.+||.|.|++.|.++ |.|
T Consensus 305 ~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI----------Rfd~ti~e~T~IkFMTDGVLLrEi~~D----flL 370 (1172)
T KOG0926|consen 305 PGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI----------RFDGTIGEDTSIKFMTDGVLLREIEND----FLL 370 (1172)
T ss_pred CCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE----------EeccccCCCceeEEecchHHHHHHHHh----Hhh
Confidence 34566777877 677888888888888888887 455666778899999999999999987 899
Q ss_pred CCccEEEEeccchhhh-----cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 340 HTLSFFVLDEADRMIE-----NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 340 ~~l~~lViDEah~ll~-----~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
+.++.|||||||.-.- .|+.+++..++..+...+.. -++.++|+||||+..++
T Consensus 371 ~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~------------------~kpLKLIIMSATLRVsD---- 428 (1172)
T KOG0926|consen 371 TKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ------------------IKPLKLIIMSATLRVSD---- 428 (1172)
T ss_pred hhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc------------------cCceeEEEEeeeEEecc----
Confidence 9999999999998421 57788888888887643322 26899999999998443
Q ss_pred HhhhcccccccccCCcchHHHHHHH-hcccCceeEEeccccccccccceEEEEEccccc---------hHHHHHHHHHhc
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSER-AGMRANVAIVDLTNMCVLANKLEESFIECKEED---------KDAYLYYILSVH 484 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---------k~~~l~~ll~~~ 484 (547)
++.+ ..|...+.++.+. .+|+.+.++.+. .+...|.|++..
T Consensus 429 ---------------------Ftenk~LFpi~pPlikVd--------ARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kL 479 (1172)
T KOG0926|consen 429 ---------------------FTENKRLFPIPPPLIKVD--------ARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKL 479 (1172)
T ss_pred ---------------------cccCceecCCCCceeeee--------cccCceEEEeccCCCchHHHHHHHHHHHHhhcC
Confidence 2211 1122222233333 335555554432 334467778888
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
|+|.+|||++++.++.+|+..|+..- -..|++.. -..+...|+++..
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~---p~~f~~~k---~~k~~k~~~e~k~ 526 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRF---PESFGGVK---MKKNVKAFKELKE 526 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhC---ccccccch---hhhhhhhcccccc
Confidence 99999999999999999999998852 12455544 3455566666654
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=5.6e-22 Score=216.61 Aligned_cols=318 Identities=15% Similarity=0.129 Sum_probs=192.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. .|+++|..+++.+. .|+ |+++.||+|||++|++|++...+ .|..|+||+|
T Consensus 75 ~g~-~p~~vQl~~~~~l~-~G~--Iaem~TGeGKTL~a~lp~~l~al-----------------------~G~~v~VvTp 127 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLH-EGN--IAEMQTGEGKTLTATMPLYLNAL-----------------------EGKGVHLITV 127 (790)
T ss_pred hCC-CCchHHHHhHHHHc-CCc--eeeecCCCcchHHHHHHHHHHHH-----------------------cCCCeEEEeC
Confidence 566 89999999998774 565 99999999999999999985543 2568999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViD 348 (547)
|++||.|.++.+..+...+|+++.++.|+.+...+.+. ...+||+++||++| .++|... ......+..+.++|||
T Consensus 128 t~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvD 206 (790)
T PRK09200 128 NDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIID 206 (790)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEe
Confidence 99999999999999999999999999999883333333 34689999999999 4544321 1112347889999999
Q ss_pred ccchhh-hc---------------CChHHHHHHHHhCCCCC-C----CC--------------------CCCCcccc---
Q 009003 349 EADRMI-EN---------------GHFRELQSIIDMLPMTN-G----SN--------------------KGQSEQTQ--- 384 (547)
Q Consensus 349 Eah~ll-~~---------------~~~~~l~~i~~~l~~~~-~----~~--------------------~~~~~~~~--- 384 (547)
|||.|+ |. ..+..+..+...+...- - .. .-.+....
T Consensus 207 EaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~ 286 (790)
T PRK09200 207 EIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLY 286 (790)
T ss_pred ccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHH
Confidence 999975 11 11333444444442110 0 00 00000000
Q ss_pred ---------------------------------------ccccccc----ccCCCcEEE---EEeccCCCChhHHHHhhh
Q 009003 385 ---------------------------------------NCVTVSS----LQRKKRQTL---VFSATIALSADFRKKLKH 418 (547)
Q Consensus 385 ---------------------------------------~~~~~~~----~~~~~~q~i---~~SATl~~~~~~~~~l~~ 418 (547)
+.|.-+- .++..+.+= ...||++. .+|.+.+..
T Consensus 287 ~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~-q~~fr~Y~k 365 (790)
T PRK09200 287 RHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITI-QNLFRMFPK 365 (790)
T ss_pred HHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhH-HHHHHHhHH
Confidence 0010000 000011100 01112210 112222210
Q ss_pred cccccccccCCc-chHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh--cCCCcEEEEeCC
Q 009003 419 GSLKSKQSVNGL-NSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV--HGQGRTIVFCTS 495 (547)
Q Consensus 419 ~~~~~~~~~~~~-~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~LVF~~s 495 (547)
........ ..-..+...+++ .++.+++.......-..-.+.+....|..+|+..+.. ..+.++||||+|
T Consensus 366 ----l~GmTGTa~t~~~e~~~~Y~l----~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t 437 (790)
T PRK09200 366 ----LSGMTGTAKTEEKEFFEVYNM----EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGS 437 (790)
T ss_pred ----HhccCCCChHHHHHHHHHhCC----cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 00000000 111233333322 2233332211111111123445667788888888864 357799999999
Q ss_pred hHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh--cCCCCCCCCC
Q 009003 496 IAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR--KRPKGDRGKD 547 (547)
Q Consensus 496 ~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~--k~~~g~~~~~ 547 (547)
++.++.|+..|...|+++..+||.+.+.+|..+...++.|.. ---..+||.|
T Consensus 438 ~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATdmAgRG~D 491 (790)
T PRK09200 438 IEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATNMAGRGTD 491 (790)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEccchhcCcC
Confidence 999999999999999999999999999999988888876632 2223445554
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.89 E-value=6.2e-22 Score=224.27 Aligned_cols=237 Identities=22% Similarity=0.274 Sum_probs=154.5
Q ss_pred HHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc----CHHHHHH
Q 009003 204 ACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP----TRELALQ 279 (547)
Q Consensus 204 ~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P----tr~La~q 279 (547)
..|..++.+++.++++|+||||||. ++|.+.. ... ......+++..| +++||.|
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~ll--e~g------------------~g~~g~I~~TQPRRlAArsLA~R 137 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICL--ELG------------------RGVKGLIGHTQPRRLAARTVANR 137 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHH--HcC------------------CCCCCceeeCCCcHHHHHHHHHH
Confidence 3444455567788999999999996 6884322 110 011123445556 5699999
Q ss_pred HHHHHHH-hhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccc-hhhhcC
Q 009003 280 VTDHLKG-VAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIENG 357 (547)
Q Consensus 280 v~~~l~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah-~ll~~~ 357 (547)
|..++.. ++..+|+.+ .+......+++|+|||||+|+.++..+ ..|+.+++||||||| ++++.+
T Consensus 138 VA~El~~~lG~~VGY~v----------rf~~~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~D 203 (1294)
T PRK11131 138 IAEELETELGGCVGYKV----------RFNDQVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNID 203 (1294)
T ss_pred HHHHHhhhhcceeceee----------cCccccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccc
Confidence 9999985 666666655 222233467899999999999999754 459999999999999 577777
Q ss_pred ChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHH
Q 009003 358 HFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLS 437 (547)
Q Consensus 358 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~ 437 (547)
|... .+...++.. ...|+|+||||+.. ..++
T Consensus 204 fLLg--~Lk~lL~~r----------------------pdlKvILmSATid~-------------------------e~fs 234 (1294)
T PRK11131 204 FILG--YLKELLPRR----------------------PDLKVIITSATIDP-------------------------ERFS 234 (1294)
T ss_pred hHHH--HHHHhhhcC----------------------CCceEEEeeCCCCH-------------------------HHHH
Confidence 7532 222223211 35799999999961 1222
Q ss_pred HHhcccCceeEEeccccccccccceEEEEEccccc---hHHHHHHHH---H---hcCCCcEEEEeCChHHHHHHHHHHHH
Q 009003 438 ERAGMRANVAIVDLTNMCVLANKLEESFIECKEED---KDAYLYYIL---S---VHGQGRTIVFCTSIAALRHISSLLKI 508 (547)
Q Consensus 438 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~ll---~---~~~~~k~LVF~~s~~~a~~L~~~L~~ 508 (547)
..++ . ..++.+..... .+.++|..+.... +..++..++ . ..+.+.+||||++..+++.+++.|..
T Consensus 235 ~~F~--~-apvI~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 235 RHFN--N-APIIEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HHcC--C-CCEEEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 2211 1 11233333221 1445555443211 223333222 1 23578999999999999999999998
Q ss_pred cCCc---eEEecCCcCHHHHHHHHHH
Q 009003 509 LGID---VWTLHAQMQQRARLKLFSQ 531 (547)
Q Consensus 509 ~g~~---v~~lhg~m~~~eR~~il~~ 531 (547)
.++. +..+||+|++.+|.+++..
T Consensus 309 ~~~~~~~VlpLhg~Ls~~eQ~~Vf~~ 334 (1294)
T PRK11131 309 LNLRHTEILPLYARLSNSEQNRVFQS 334 (1294)
T ss_pred cCCCcceEeecccCCCHHHHHHHhcc
Confidence 8764 7789999999999999875
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.89 E-value=7.9e-22 Score=212.15 Aligned_cols=134 Identities=25% Similarity=0.330 Sum_probs=109.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. +|+++|..+.+.+. .|+ |+.++||+|||++|++|++...+. +..|+||+|
T Consensus 53 lg~-~p~~vQlig~~~l~-~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~VvTp 105 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALH-KGK--IAEMKTGEGKTLTATLPAYLNALT-----------------------GKGVHVVTV 105 (745)
T ss_pred hCC-CccchHHhhhhhhc-CCc--eeeecCCCccHHHHHHHHHHHHHh-----------------------CCCEEEEcC
Confidence 465 89999999988764 555 999999999999999999543321 236999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC---CCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~---~~~~~l~~l~~lViD 348 (547)
|+.||.|.++.+..+...+|+++.+++|+.+........ .++|+|+||++| ++++.... ...+.++.+.++|||
T Consensus 106 t~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIID 183 (745)
T TIGR00963 106 NDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIID 183 (745)
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEee
Confidence 999999999999999999999999999998876544433 489999999999 88885431 112457899999999
Q ss_pred ccchhhh
Q 009003 349 EADRMIE 355 (547)
Q Consensus 349 Eah~ll~ 355 (547)
|||+|+-
T Consensus 184 EaDs~LI 190 (745)
T TIGR00963 184 EVDSILI 190 (745)
T ss_pred cHHHHhH
Confidence 9999863
No 78
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1.6e-22 Score=218.84 Aligned_cols=282 Identities=15% Similarity=0.147 Sum_probs=176.4
Q ss_pred CCcHHHHHHHHHHHhcC--CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 197 EPTPIQKACIPAAAHQG--KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~--~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
.++|+|.+++..++.+| +..++++|||+|||+..+..+. .+ +.++|||||+.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------------------------~k~tLILvps~ 308 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------------------------KKSCLVLCTSA 308 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------------------------CCCEEEEeCcH
Confidence 68999999999988655 4789999999999988664432 22 13599999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC-----CcccCCCccEEEEec
Q 009003 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK-----HLVELHTLSFFVLDE 349 (547)
Q Consensus 275 ~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~-----~~~~l~~l~~lViDE 349 (547)
.|+.||.++|..++......+..++|+.... ......|+|+|+..+.....+... ..+.-..+.+||+||
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DE 383 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDE 383 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEc
Confidence 9999999999988654455666676653221 123468999999887532211100 012234678999999
Q ss_pred cchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCC
Q 009003 350 ADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNG 429 (547)
Q Consensus 350 ah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~ 429 (547)
||++.. .....++..+. ....|++|||+...++....+.. .+......
T Consensus 384 vH~lpA----~~fr~il~~l~-------------------------a~~RLGLTATP~ReD~~~~~L~~-LiGP~vye-- 431 (732)
T TIGR00603 384 VHVVPA----AMFRRVLTIVQ-------------------------AHCKLGLTATLVREDDKITDLNF-LIGPKLYE-- 431 (732)
T ss_pred cccccH----HHHHHHHHhcC-------------------------cCcEEEEeecCcccCCchhhhhh-hcCCeeee--
Confidence 999853 33444555553 23579999999765543332211 11111111
Q ss_pred cchHHHHHHHhcccC-cee--EEeccccc---cccccc-eEEEEEccccchHHHHHHHHHhc--CCCcEEEEeCChHHHH
Q 009003 430 LNSIETLSERAGMRA-NVA--IVDLTNMC---VLANKL-EESFIECKEEDKDAYLYYILSVH--GQGRTIVFCTSIAALR 500 (547)
Q Consensus 430 ~~~i~~l~~~~~~~~-~~~--~i~~~~~~---~~~~~i-~~~~~~~~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~ 500 (547)
-...++...-.+.+ .+. .+...... ...... ...........|+..+..+++.+ .+.++||||.++..+.
T Consensus 432 -~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~ 510 (732)
T TIGR00603 432 -ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALK 510 (732)
T ss_pred -cCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHH
Confidence 12233332211111 111 11111110 000000 00011112345666777777755 6789999999999999
Q ss_pred HHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhh-hh----cCCCCCCCCC
Q 009003 501 HISSLLKILGIDVWTLHAQMQQRARLKLFSQMITW-IR----KRPKGDRGKD 547 (547)
Q Consensus 501 ~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~-~~----k~~~g~~~~~ 547 (547)
.++..| .+..+||++++.+|.+++++|+++ .. -...|++|+|
T Consensus 511 ~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGID 557 (732)
T TIGR00603 511 EYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSID 557 (732)
T ss_pred HHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccC
Confidence 999887 256789999999999999999975 32 3478889987
No 79
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=3.5e-22 Score=221.34 Aligned_cols=269 Identities=20% Similarity=0.213 Sum_probs=194.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCe
Q 009003 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHL 265 (547)
Q Consensus 186 l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (547)
+......+|...+++-|.++|..++ .|+|+++..|||.||++||+||++-. ++
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l-~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------------------~g 305 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATL-SGKDCFVLMPTGGGKSLCYQLPALLL--------------------------GG 305 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHH-cCCceEEEeecCCceeeEeecccccc--------------------------CC
Confidence 3333455899999999999999887 79999999999999999999997742 34
Q ss_pred EEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH---Hhc-C--CCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER---LLK-A--RPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 266 ~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~-~--~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
.+|||.|.++|+..+...+... ++....+.++.....+.. .+. + .++|+..||+.+.....- ......|
T Consensus 306 itvVISPL~SLm~DQv~~L~~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l-~~~~~~L 380 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGL-LESLADL 380 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccch-hhHHHhc
Confidence 7999999999999888877554 888889998888754332 222 3 589999999998542210 1112334
Q ss_pred CC---ccEEEEeccchhhhcCC-----hHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChh
Q 009003 340 HT---LSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD 411 (547)
Q Consensus 340 ~~---l~~lViDEah~ll~~~~-----~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 411 (547)
.. +.++||||||+...||+ +..+..++...+ ...+|.+|||.....
T Consensus 381 ~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-------------------------~vP~iALTATAT~~v- 434 (941)
T KOG0351|consen 381 YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-------------------------GVPFIALTATATERV- 434 (941)
T ss_pred cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-------------------------CCCeEEeehhccHHH-
Confidence 45 89999999999999986 566666666665 257999999986322
Q ss_pred HHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccch-HHHHHHHHHhcCCCcEE
Q 009003 412 FRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDK-DAYLYYILSVHGQGRTI 490 (547)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k-~~~l~~ll~~~~~~k~L 490 (547)
.++++..+++.....+- ......++...+..-..... ...+..+-..++.+.+|
T Consensus 435 ---------------------~~DIi~~L~l~~~~~~~----~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 435 ---------------------REDVIRSLGLRNPELFK----SSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGI 489 (941)
T ss_pred ---------------------HHHHHHHhCCCCcceec----ccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeE
Confidence 33444444444333221 12223334322222221222 22333333456788999
Q ss_pred EEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
|||.++.+|+.++..|+..|+.+..||++|+..+|..+...|..+..
T Consensus 490 IYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~ 536 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKI 536 (941)
T ss_pred EEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999988754
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=3.3e-22 Score=195.79 Aligned_cols=268 Identities=22% Similarity=0.296 Sum_probs=184.6
Q ss_pred HHHHHHHH-cCCCC-CcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCC
Q 009003 185 LLMKSIYR-LQFKE-PTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPK 262 (547)
Q Consensus 185 ~l~~~l~~-~~~~~-~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 262 (547)
.+..+|++ +|+.. -++.|.+|+..++....||.++.|||+||+++|+||.|-+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------------------- 60 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------------------- 60 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------------------
Confidence 34555655 56644 4799999999999888999999999999999999998865
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc------CCCcEEEeChHHHHHHHhcC-CCC
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK------ARPEVVVGTPGRLWELMSGG-EKH 335 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~dIlv~TP~~l~~~l~~~-~~~ 335 (547)
+..+||+.|..+|.....++|..+ .+++..+.+..+..+..+.+. ....|+.-||+....-..+. -..
T Consensus 61 -~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 61 -GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred -CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 237999999999999999999988 667766777777666554442 36789999998763221110 001
Q ss_pred cccCCCccEEEEeccchhhhcCC-----hHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 336 LVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~-----~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
...-..+.|+||||||+..+||+ +-.+-.+...++ ....+.+|||.....
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-------------------------~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-------------------------GVPWVALTATANAKV 190 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-------------------------CCceEEeecccChhH
Confidence 12245679999999999999986 455666666664 456789999976322
Q ss_pred --hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc----cchHHHHHHHHHh-
Q 009003 411 --DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE----EDKDAYLYYILSV- 483 (547)
Q Consensus 411 --~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~k~~~l~~ll~~- 483 (547)
|+...|. +..++.++..+... .+ .++-+.. .+-+..|.++...
T Consensus 191 qEDi~~qL~------------------------L~~PVAiFkTP~FR---~N---LFYD~~~K~~I~D~~~~LaDF~~~~ 240 (641)
T KOG0352|consen 191 QEDIAFQLK------------------------LRNPVAIFKTPTFR---DN---LFYDNHMKSFITDCLTVLADFSSSN 240 (641)
T ss_pred HHHHHHHHh------------------------hcCcHHhccCcchh---hh---hhHHHHHHHHhhhHhHhHHHHHHHh
Confidence 3333332 22222222111100 00 0000000 1112223333221
Q ss_pred ------------cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 484 ------------HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 484 ------------~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
-..|-.||||.|+++|++++-.|...|+++..||+++...+|..+.+.|.++..
T Consensus 241 LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~ 306 (641)
T KOG0352|consen 241 LGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEI 306 (641)
T ss_pred cCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCC
Confidence 114689999999999999999999999999999999999999999999988764
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.8e-21 Score=212.21 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=106.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. .|+++|.-.--. |+.| -|+.++||+|||++|++|++..++. +..|+||+|
T Consensus 79 lg~-~~ydvQliGg~~-Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~-----------------------G~~V~VvTp 131 (896)
T PRK13104 79 LGL-RHFDVQLIGGMV-LHEG--NIAEMRTGEGKTLVATLPAYLNAIS-----------------------GRGVHIVTV 131 (896)
T ss_pred cCC-CcchHHHhhhhh-hccC--ccccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEcC
Confidence 455 788888776533 3444 4889999999999999999976532 235999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCCCCcccC-----CCccEEE
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGEKHLVEL-----HTLSFFV 346 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~~~~~~l-----~~l~~lV 346 (547)
|++||.|.++.+..+...+|+.+.+++|+.+........ .+||+|+||++| +++|.... .+.+ ..+.++|
T Consensus 132 n~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~I 207 (896)
T PRK13104 132 NDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAI 207 (896)
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEE
Confidence 999999999999999999999999999998887665444 589999999999 88886531 1223 6899999
Q ss_pred Eeccchhh
Q 009003 347 LDEADRMI 354 (547)
Q Consensus 347 iDEah~ll 354 (547)
|||||.||
T Consensus 208 vDEaDsiL 215 (896)
T PRK13104 208 VDEVDSIL 215 (896)
T ss_pred eccHhhhh
Confidence 99999986
No 82
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.2e-20 Score=189.94 Aligned_cols=167 Identities=24% Similarity=0.314 Sum_probs=130.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.++.+|......++ .++.|++.|||-|||+..++-+.+++... .+ ++|+|+||+-|
T Consensus 15 e~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~~---------------------~~-kvlfLAPTKPL 70 (542)
T COG1111 15 EPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRWF---------------------GG-KVLFLAPTKPL 70 (542)
T ss_pred cHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHhc---------------------CC-eEEEecCCchH
Confidence 67889999888887 46999999999999999888888877432 23 89999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~ 356 (547)
+.|.++.|.+...-..-.++.++|...+.+....+. ...|+|+||..+..-|.. ..+++..+.+||+||||+-.
T Consensus 71 V~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~---Grid~~dv~~lifDEAHRAv-- 144 (542)
T COG1111 71 VLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKA---GRIDLDDVSLLIFDEAHRAV-- 144 (542)
T ss_pred HHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhc---CccChHHceEEEechhhhcc--
Confidence 999999999997766678899999999987665554 468999999999887744 46899999999999999984
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 357 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
|++.-+.-.-..+... +.+.++++|||+..+.+-.+.
T Consensus 145 GnyAYv~Va~~y~~~~----------------------k~~~ilgLTASPGs~~ekI~e 181 (542)
T COG1111 145 GNYAYVFVAKEYLRSA----------------------KNPLILGLTASPGSDLEKIQE 181 (542)
T ss_pred CcchHHHHHHHHHHhc----------------------cCceEEEEecCCCCCHHHHHH
Confidence 4433322222222111 567899999998866654443
No 83
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.86 E-value=1.4e-20 Score=200.08 Aligned_cols=167 Identities=22% Similarity=0.229 Sum_probs=127.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
.-.++.+|.+.+..+| |+++||++|||+|||++++..+++++.. ++..++|+++||+
T Consensus 60 ~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw---------------------~p~~KiVF~aP~~ 116 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW---------------------RPKGKVVFLAPTR 116 (746)
T ss_pred cccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc---------------------CCcceEEEeeCCc
Confidence 3378999999999997 9999999999999999999999988732 3347999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 275 ~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
-|+.|....+..++.. ..+....||..+......+-...+|+|+||..|...|.++.... |+.+.++||||||+-.
T Consensus 117 pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~ 192 (746)
T KOG0354|consen 117 PLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTS 192 (746)
T ss_pred hHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEccccccc
Confidence 9999999888777554 55556666655444444555678999999999998887653332 8999999999999986
Q ss_pred hcCChHHHH-HHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 355 ENGHFRELQ-SIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 355 ~~~~~~~l~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
...-+..|. .++..-+ ...|+|++|||+....+-
T Consensus 193 kn~~Y~~Vmr~~l~~k~------------------------~~~qILgLTASpG~~~~~ 227 (746)
T KOG0354|consen 193 KNHPYNNIMREYLDLKN------------------------QGNQILGLTASPGSKLEQ 227 (746)
T ss_pred ccccHHHHHHHHHHhhh------------------------ccccEEEEecCCCccHHH
Confidence 444454444 4443332 344999999998855443
No 84
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=4e-21 Score=208.64 Aligned_cols=286 Identities=17% Similarity=0.195 Sum_probs=203.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|...+..+|....+.++....++++|||||+|||...++-+|+.+....... ........++++++|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d------------gs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED------------GSVNLAPFKIVYIAP 372 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc------------cceecccceEEEEee
Confidence 35556999999999999877789999999999999999999999885443210 011123458999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ 352 (547)
..+||..|...|.+....+|+.|.-++|+.....+. ...++|+||||+.. +.+.+.....-..+-++++||||.|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999998899999999999987643321 24588999999995 45543322223355678999999997
Q ss_pred hhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcch
Q 009003 353 MIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNS 432 (547)
Q Consensus 353 ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (547)
+- ...+..+++|..+........ ...++++++|||+|+..|....|....
T Consensus 449 Lh-DdRGpvLESIVaRt~r~ses~-----------------~e~~RlVGLSATLPNy~DV~~Fl~v~~------------ 498 (1674)
T KOG0951|consen 449 LH-DDRGPVLESIVARTFRRSEST-----------------EEGSRLVGLSATLPNYEDVASFLRVDP------------ 498 (1674)
T ss_pred cc-cccchHHHHHHHHHHHHhhhc-----------------ccCceeeeecccCCchhhhHHHhccCc------------
Confidence 65 456777777776654322111 146789999999998877766664221
Q ss_pred HHHHHHHhcccCceeEEeccccccccccceEEEEEccccchH--------HHHHHHHHhcCCCcEEEEeCChHHHHHHHH
Q 009003 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKD--------AYLYYILSVHGQGRTIVFCTSIAALRHISS 504 (547)
Q Consensus 433 i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~--------~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~ 504 (547)
..++.+ ...+.+--+.|.|+-+...... ....+++...+.+++|||+.+++++-..|.
T Consensus 499 -------------~glf~f-d~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~ 564 (1674)
T KOG0951|consen 499 -------------EGLFYF-DSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTAR 564 (1674)
T ss_pred -------------cccccc-CcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHH
Confidence 111111 1111122255666665443221 233455666677899999999998888777
Q ss_pred HHHH-------------------------------------cCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 505 LLKI-------------------------------------LGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 505 ~L~~-------------------------------------~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.++. +.+.++.+|+||+..+|..+.+.|++|..+
T Consensus 565 aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq 635 (1674)
T KOG0951|consen 565 AIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ 635 (1674)
T ss_pred HHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee
Confidence 6641 135689999999999999999999999765
No 85
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.86 E-value=7.7e-20 Score=187.05 Aligned_cols=263 Identities=14% Similarity=0.187 Sum_probs=189.5
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-C----------cE---------EEEEEcCCCHHHHHHHhcC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-N----------VR---------VVPIVGGMSTEKQERLLKA 313 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~----------~~---------v~~~~g~~~~~~~~~~~~~ 313 (547)
+...++++.++|+||||+|+|..|.++++.|..++... . +. ...-.....+.+....+.+
T Consensus 27 ~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~G 106 (442)
T PF06862_consen 27 EDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSG 106 (442)
T ss_pred cchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCC
Confidence 45668999999999999999999999999999886541 0 00 0000012223333333332
Q ss_pred ------------------------CCcEEEeChHHHHHHHhcC---CCCcccCCCccEEEEeccchhhhcCChHHHHHHH
Q 009003 314 ------------------------RPEVVVGTPGRLWELMSGG---EKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366 (547)
Q Consensus 314 ------------------------~~dIlv~TP~~l~~~l~~~---~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~ 366 (547)
.+|||||||..|...+... ....-.|++|+++|||.||.|+ |++|+++..|+
T Consensus 107 N~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~ 185 (442)
T PF06862_consen 107 NNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVF 185 (442)
T ss_pred CccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHH
Confidence 2799999999999998752 1222339999999999999998 99999999999
Q ss_pred HhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCce
Q 009003 367 DMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANV 446 (547)
Q Consensus 367 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 446 (547)
.+|+..|...|++|++|+++|+++.+++.-+|+|+||+... +++...+...... .....
T Consensus 186 ~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~--pe~~slf~~~~~N-------------------~~G~v 244 (442)
T PF06862_consen 186 EHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT--PEINSLFNRHCQN-------------------YAGKV 244 (442)
T ss_pred HHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCC--HHHHHHHHhhCcC-------------------ccceE
Confidence 99999999999999999999999999999999999999977 3333333221100 11111
Q ss_pred eEEeccc----cccccccceEEEEEccc-------cchHHHHHH-H---HH-hcCCCcEEEEeCChHHHHHHHHHHHHcC
Q 009003 447 AIVDLTN----MCVLANKLEESFIECKE-------EDKDAYLYY-I---LS-VHGQGRTIVFCTSIAALRHISSLLKILG 510 (547)
Q Consensus 447 ~~i~~~~----~~~~~~~i~~~~~~~~~-------~~k~~~l~~-l---l~-~~~~~k~LVF~~s~~~a~~L~~~L~~~g 510 (547)
.+..... .......+.|.+...+. ..++.+... + +. ....+++|||++|--.=-.|.++|+..+
T Consensus 245 ~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~ 324 (442)
T PF06862_consen 245 RLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN 324 (442)
T ss_pred EEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC
Confidence 1111111 12233346666665432 234444332 2 22 3346899999999998889999999999
Q ss_pred CceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 511 IDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 511 ~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+....+|--.++.+-.++-..|.+|..+
T Consensus 325 ~sF~~i~EYts~~~isRAR~~F~~G~~~ 352 (442)
T PF06862_consen 325 ISFVQISEYTSNSDISRARSQFFHGRKP 352 (442)
T ss_pred CeEEEecccCCHHHHHHHHHHHHcCCce
Confidence 9999999999999999999999998654
No 86
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5.8e-21 Score=207.77 Aligned_cols=147 Identities=20% Similarity=0.311 Sum_probs=127.2
Q ss_pred cCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009003 179 ELRLHPLLMKSIY-----RLQFKEP---TPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLE 250 (547)
Q Consensus 179 ~l~l~~~l~~~l~-----~~~~~~~---~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 250 (547)
.|.+.+.+.+.+. ..||..| +|+|.++||.++ .++++|++++||+|||++|++|+++.++..
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------- 135 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALTG--------- 135 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------
Confidence 4578888888877 6899988 999999999998 689999999999999999999999877421
Q ss_pred hhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHH
Q 009003 251 DKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELM 329 (547)
Q Consensus 251 ~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l 329 (547)
..++||+||++||.|+++.+..++..+++++.+++||.+...+...+ ++||+|+||++| ++++
T Consensus 136 --------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyL 199 (970)
T PRK12899 136 --------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYL 199 (970)
T ss_pred --------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHh
Confidence 13899999999999999999999999999999999999998876555 599999999999 9999
Q ss_pred hcCCCCcccCC-------CccEEEEeccchhh
Q 009003 330 SGGEKHLVELH-------TLSFFVLDEADRMI 354 (547)
Q Consensus 330 ~~~~~~~~~l~-------~l~~lViDEah~ll 354 (547)
... .+.++ .+.++||||||.||
T Consensus 200 rd~---~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 200 RDN---SIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred hCC---CCCcCHHHhhcccccEEEEechhhhh
Confidence 653 23444 55899999999986
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=2e-19 Score=198.38 Aligned_cols=122 Identities=22% Similarity=0.311 Sum_probs=99.8
Q ss_pred CCcHHHHHHHHHHHhc--CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 197 EPTPIQKACIPAAAHQ--GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~--~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
.+++.|.+++..++.. +++++++|+||||||.+|+.++...+.. +.++|||+||+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------------------g~~vLvLvPt~ 200 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------------------GKQALVLVPEI 200 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------------------CCeEEEEeCcH
Confidence 6899999999999742 5789999999999999998877766521 35899999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEecc
Q 009003 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 275 ~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEa 350 (547)
+|+.|+++.|.+. ++.++..++|+.+....... ..+.++|+|+|++.+. ..++++.+|||||+
T Consensus 201 ~L~~Q~~~~l~~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEe 267 (679)
T PRK05580 201 ALTPQMLARFRAR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEE 267 (679)
T ss_pred HHHHHHHHHHHHH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECC
Confidence 9999999999875 36789999999887554332 3356899999998763 34788999999999
Q ss_pred chhh
Q 009003 351 DRMI 354 (547)
Q Consensus 351 h~ll 354 (547)
|...
T Consensus 268 h~~s 271 (679)
T PRK05580 268 HDSS 271 (679)
T ss_pred Cccc
Confidence 9765
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.85 E-value=1.7e-19 Score=200.67 Aligned_cols=283 Identities=16% Similarity=0.130 Sum_probs=162.2
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..|+|+|..+..... ++.-+|+.||||+|||.+.++.+...+ .. ....+++|.+||++
T Consensus 285 ~~p~p~Q~~~~~~~~-~pgl~ileApTGsGKTEAAL~~A~~l~-~~--------------------~~~~gi~~aLPT~A 342 (878)
T PRK09694 285 YQPRQLQTLVDALPL-QPGLTIIEAPTGSGKTEAALAYAWRLI-DQ--------------------GLADSIIFALPTQA 342 (878)
T ss_pred CCChHHHHHHHhhcc-CCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh--------------------CCCCeEEEECcHHH
Confidence 489999998864433 466789999999999999776655332 21 12347999999999
Q ss_pred HHHHHHHHHHHhhcCC--CcEEEEEEcCCCHHHHH---------------------HHhc---C---CCcEEEeChHHHH
Q 009003 276 LALQVTDHLKGVAKGI--NVRVVPIVGGMSTEKQE---------------------RLLK---A---RPEVVVGTPGRLW 326 (547)
Q Consensus 276 La~qv~~~l~~~~~~~--~~~v~~~~g~~~~~~~~---------------------~~~~---~---~~dIlv~TP~~l~ 326 (547)
+++|+++.+..+.... ...+.+++|........ ..+. . -.+|+|||+.+++
T Consensus 343 tan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL 422 (878)
T PRK09694 343 TANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVL 422 (878)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHH
Confidence 9999999998755432 34677777765422110 0111 1 1689999999987
Q ss_pred HHHhcCCCC---cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEe
Q 009003 327 ELMSGGEKH---LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFS 403 (547)
Q Consensus 327 ~~l~~~~~~---~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 403 (547)
..+-..... .+.|. -++|||||+|.+- .-+...+..+++.+.. ....+|+||
T Consensus 423 ~a~l~~kh~~lR~~~La-~svvIiDEVHAyD-~ym~~lL~~~L~~l~~-----------------------~g~~vIllS 477 (878)
T PRK09694 423 ISVLPVKHRFIRGFGLG-RSVLIVDEVHAYD-AYMYGLLEAVLKAQAQ-----------------------AGGSVILLS 477 (878)
T ss_pred HHHHccchHHHHHHhhc-cCeEEEechhhCC-HHHHHHHHHHHHHHHh-----------------------cCCcEEEEe
Confidence 554332111 11122 2589999999873 3344555666655431 345799999
Q ss_pred ccCCCChhHHHHhhhccccc-cccc-CCcchHHHHHHHhcccCceeEEeccccc---cccccceEEEEEccc-cchHHHH
Q 009003 404 ATIALSADFRKKLKHGSLKS-KQSV-NGLNSIETLSERAGMRANVAIVDLTNMC---VLANKLEESFIECKE-EDKDAYL 477 (547)
Q Consensus 404 ATl~~~~~~~~~l~~~~~~~-~~~~-~~~~~i~~l~~~~~~~~~~~~i~~~~~~---~~~~~i~~~~~~~~~-~~k~~~l 477 (547)
||++. .+.+.|...+-.. .... ...+-+ +.... .....+...... .....+.-....... ......+
T Consensus 478 ATLP~--~~r~~L~~a~~~~~~~~~~~~YPlv-t~~~~----~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l 550 (878)
T PRK09694 478 ATLPA--TLKQKLLDTYGGHDPVELSSAYPLI-TWRGV----NGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLL 550 (878)
T ss_pred CCCCH--HHHHHHHHHhccccccccccccccc-ccccc----ccceeeeccccccccCcceEEEEEeeccccccCHHHHH
Confidence 99983 3333332211000 0000 000000 00000 000001000000 000001100010111 1122334
Q ss_pred HHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcC---CceEEecCCcCHHHHHH----HHHHH
Q 009003 478 YYILSV-HGQGRTIVFCTSIAALRHISSLLKILG---IDVWTLHAQMQQRARLK----LFSQM 532 (547)
Q Consensus 478 ~~ll~~-~~~~k~LVF~~s~~~a~~L~~~L~~~g---~~v~~lhg~m~~~eR~~----il~~F 532 (547)
..++.. ..++++||||||++.|+.++..|+..+ ..+.++||+|+..+|.+ +++.|
T Consensus 551 ~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~f 613 (878)
T PRK09694 551 QRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENF 613 (878)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 444443 346789999999999999999999864 68999999999999954 55556
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=7.1e-20 Score=208.43 Aligned_cols=252 Identities=21% Similarity=0.254 Sum_probs=155.3
Q ss_pred cCCCCCcHHHH--HHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEE
Q 009003 193 LQFKEPTPIQK--ACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270 (547)
Q Consensus 193 ~~~~~~~~iQ~--~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 270 (547)
..|...-|+.. ..|...+.+++.+|++|+||||||. ++|.+.. .. ......+++++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~ll--e~------------------~~~~~~~I~~t 117 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICL--EL------------------GRGSHGLIGHT 117 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHH--Hc------------------CCCCCceEecC
Confidence 34544455544 4454555567888999999999995 6774432 11 01112366777
Q ss_pred ccCHHHHHHHHHHHHHh-hcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEec
Q 009003 271 TPTRELALQVTDHLKGV-AKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 349 (547)
Q Consensus 271 ~Ptr~La~qv~~~l~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDE 349 (547)
.|.|-.|..++..+... ...+|-.|+.-+ .+......++.|+|+|||+|+..+..+ ..|+.+++|||||
T Consensus 118 QPRRlAA~svA~RvA~elg~~lG~~VGY~v------R~~~~~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDE 187 (1283)
T TIGR01967 118 QPRRLAARTVAQRIAEELGTPLGEKVGYKV------RFHDQVSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDE 187 (1283)
T ss_pred CccHHHHHHHHHHHHHHhCCCcceEEeeEE------cCCcccCCCceeeeccccHHHHHhhhC----cccccCcEEEEcC
Confidence 78886666655554432 222232332211 122223457899999999999998654 4589999999999
Q ss_pred cc-hhhhcCChHH-HHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhccccccccc
Q 009003 350 AD-RMIENGHFRE-LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSV 427 (547)
Q Consensus 350 ah-~ll~~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~ 427 (547)
|| ++++.++.-. +..++... ...|+|+||||+..
T Consensus 188 aHERsL~~D~LL~lLk~il~~r-------------------------pdLKlIlmSATld~------------------- 223 (1283)
T TIGR01967 188 AHERSLNIDFLLGYLKQLLPRR-------------------------PDLKIIITSATIDP------------------- 223 (1283)
T ss_pred cchhhccchhHHHHHHHHHhhC-------------------------CCCeEEEEeCCcCH-------------------
Confidence 99 5777666543 55554332 35799999999961
Q ss_pred CCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc------cchHHHHHHHHH---hcCCCcEEEEeCChHH
Q 009003 428 NGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE------EDKDAYLYYILS---VHGQGRTIVFCTSIAA 498 (547)
Q Consensus 428 ~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~---~~~~~k~LVF~~s~~~ 498 (547)
..++..++ +..++........ +..+|..+.. ......++..+. ....|.+||||++..+
T Consensus 224 ------~~fa~~F~---~apvI~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 224 ------ERFSRHFN---NAPIIEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred ------HHHHHHhc---CCCEEEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 22222221 1112333322221 2233433321 122233333332 2256899999999999
Q ss_pred HHHHHHHHHHcC---CceEEecCCcCHHHHHHHHHHH
Q 009003 499 LRHISSLLKILG---IDVWTLHAQMQQRARLKLFSQM 532 (547)
Q Consensus 499 a~~L~~~L~~~g---~~v~~lhg~m~~~eR~~il~~F 532 (547)
++.++..|+..+ +.+..+||+|++.+|.+++..+
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC
Confidence 999999999864 4588999999999999986543
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.84 E-value=7.3e-20 Score=192.58 Aligned_cols=277 Identities=21% Similarity=0.184 Sum_probs=169.7
Q ss_pred CCcHHHHHHHHHHHhc---CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAAHQ---GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~---~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.|+++|.+++..+... ++..++++|||+|||+.++..+... +.++||||||
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------------------~~~~Lvlv~~ 89 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------------------KRSTLVLVPT 89 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------------------cCCEEEEECc
Confidence 6999999999999854 8899999999999998765544332 1239999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH--HhcCCCCcccCCCccEEEEeccc
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL--MSGGEKHLVELHTLSFFVLDEAD 351 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~--l~~~~~~~~~l~~l~~lViDEah 351 (547)
++|+.||.+.+....... -.+..+.|+. .. +.. ..|.|+|...+... +. .+....+.+||+||||
T Consensus 90 ~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~-~~-----~~~-~~i~vat~qtl~~~~~l~-----~~~~~~~~liI~DE~H 156 (442)
T COG1061 90 KELLDQWAEALKKFLLLN-DEIGIYGGGE-KE-----LEP-AKVTVATVQTLARRQLLD-----EFLGNEFGLIIFDEVH 156 (442)
T ss_pred HHHHHHHHHHHHHhcCCc-cccceecCce-ec-----cCC-CcEEEEEhHHHhhhhhhh-----hhcccccCEEEEEccc
Confidence 999999987776653221 1223333322 11 111 46999999998764 22 1334578999999999
Q ss_pred hhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcE-EEEEeccCCCChh-HHHHhhhcccccccccCC
Q 009003 352 RMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQ-TLVFSATIALSAD-FRKKLKHGSLKSKQSVNG 429 (547)
Q Consensus 352 ~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~i~~SATl~~~~~-~~~~l~~~~~~~~~~~~~ 429 (547)
++....+ . .+...+. ... +++||||+...+. ....+.. .+.....
T Consensus 157 h~~a~~~-~---~~~~~~~-------------------------~~~~~LGLTATp~R~D~~~~~~l~~-~~g~~vy--- 203 (442)
T COG1061 157 HLPAPSY-R---RILELLS-------------------------AAYPRLGLTATPEREDGGRIGDLFD-LIGPIVY--- 203 (442)
T ss_pred cCCcHHH-H---HHHHhhh-------------------------cccceeeeccCceeecCCchhHHHH-hcCCeEe---
Confidence 9974333 2 2333332 123 8999999875552 2222211 1110000
Q ss_pred cchHHHHHHHhcccCceeEEeccc----c-ccccccceE------------------EEEEccccchHHHHHHHHHhc-C
Q 009003 430 LNSIETLSERAGMRANVAIVDLTN----M-CVLANKLEE------------------SFIECKEEDKDAYLYYILSVH-G 485 (547)
Q Consensus 430 ~~~i~~l~~~~~~~~~~~~i~~~~----~-~~~~~~i~~------------------~~~~~~~~~k~~~l~~ll~~~-~ 485 (547)
.-....+...-.+. ++.++.... . ......... ..+......+...+..++..+ .
T Consensus 204 ~~~~~~li~~g~La-p~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (442)
T COG1061 204 EVSLKELIDEGYLA-PYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHAR 282 (442)
T ss_pred ecCHHHHHhCCCcc-ceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcC
Confidence 01123332221111 221111111 0 000000000 011112233444455555555 3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc----CCCCCCCCC
Q 009003 486 QGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK----RPKGDRGKD 547 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k----~~~g~~~~~ 547 (547)
..++||||.++.++..++..|...|+ +..+.|..+..+|..++++|+.|..+ ...++.|.|
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvD 347 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVD 347 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceec
Confidence 67999999999999999999999888 99999999999999999999996543 445666655
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=5e-19 Score=193.06 Aligned_cols=287 Identities=18% Similarity=0.185 Sum_probs=187.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIM-QRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
+|. +|+++|.-..- +|+.|+ |+.++||+|||+++.+|++ +.+ . +..+-||+
T Consensus 78 lg~-~~~dvQlig~l-~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~-----------------------G~~V~IvT 129 (830)
T PRK12904 78 LGM-RHFDVQLIGGM-VLHEGK--IAEMKTGEGKTLVATLPAYLNAL-T-----------------------GKGVHVVT 129 (830)
T ss_pred hCC-CCCccHHHhhH-HhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-c-----------------------CCCEEEEe
Confidence 555 78999988774 445564 8999999999999999996 544 1 22477999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCCC---CcccCCCccEEEE
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGEK---HLVELHTLSFFVL 347 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~~---~~~~l~~l~~lVi 347 (547)
||..||.|.++.+..+...+|+++.+++|+.+...+.... .+||+++||++| +++|..... ....++.+.++||
T Consensus 130 pn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIv 207 (830)
T PRK12904 130 VNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIV 207 (830)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEE
Confidence 9999999999999999999999999999999987766654 489999999999 888864311 0123778999999
Q ss_pred eccchhh-hc---------------CChHHHHHHHHhCCCCCC-CC----C--------------------CCCcccc--
Q 009003 348 DEADRMI-EN---------------GHFRELQSIIDMLPMTNG-SN----K--------------------GQSEQTQ-- 384 (547)
Q Consensus 348 DEah~ll-~~---------------~~~~~l~~i~~~l~~~~~-~~----~--------------------~~~~~~~-- 384 (547)
||||.|| |. ..+..+..+...|..... .. . -.+....
T Consensus 208 DEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~ 287 (830)
T PRK12904 208 DEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIAL 287 (830)
T ss_pred echhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHH
Confidence 9999975 11 124455555555532100 00 0 0000000
Q ss_pred ----------------------------------------cccc--------------------------cccccCCCcE
Q 009003 385 ----------------------------------------NCVT--------------------------VSSLQRKKRQ 398 (547)
Q Consensus 385 ----------------------------------------~~~~--------------------------~~~~~~~~~q 398 (547)
+-|. .-+..+.-.+
T Consensus 288 ~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~k 367 (830)
T PRK12904 288 VHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEK 367 (830)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcch
Confidence 0010 0011111123
Q ss_pred EEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHH
Q 009003 399 TLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLY 478 (547)
Q Consensus 399 ~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 478 (547)
+.+||.|.. .....+...+++ .++.+++.......-..-.+......|..++.
T Consensus 368 l~GmTGTa~-----------------------te~~E~~~iY~l----~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~ 420 (830)
T PRK12904 368 LAGMTGTAD-----------------------TEAEEFREIYNL----DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVV 420 (830)
T ss_pred hcccCCCcH-----------------------HHHHHHHHHhCC----CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHH
Confidence 334444432 112233333322 22222222111111111133334567888888
Q ss_pred HHHHh--cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 479 YILSV--HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 479 ~ll~~--~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
..+.. ..+.++||||+|+..++.|+..|...|+++..+||. +.+|+..+..|+.+...
T Consensus 421 ~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~ 480 (830)
T PRK12904 421 EDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA 480 (830)
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce
Confidence 88864 456799999999999999999999999999999995 88999999999876543
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=3e-20 Score=197.57 Aligned_cols=167 Identities=21% Similarity=0.315 Sum_probs=137.9
Q ss_pred HHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEE
Q 009003 191 YRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA--FGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRAL 268 (547)
Q Consensus 191 ~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~--~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (547)
...+| .|...|++||-++. .|..|++.|+|.+|||++ |++.+.+. ...|++
T Consensus 292 ~~~pF-elD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq~-------------------------h~TR~i 344 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQK-------------------------HMTRTI 344 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHHh-------------------------hccceE
Confidence 34566 78999999998875 799999999999999988 44443332 246899
Q ss_pred EEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEe
Q 009003 269 IITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348 (547)
Q Consensus 269 il~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViD 348 (547)
|.+|-++|.+|-++.|+......| +++|+.... ....++|||-+.|..+|-++ .-.++++++||+|
T Consensus 345 YTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvqin-------PeAsCLIMTTEILRsMLYrg---adliRDvE~VIFD 410 (1248)
T KOG0947|consen 345 YTSPIKALSNQKFRDFKETFGDVG----LLTGDVQIN-------PEASCLIMTTEILRSMLYRG---ADLIRDVEFVIFD 410 (1248)
T ss_pred ecchhhhhccchHHHHHHhccccc----eeecceeeC-------CCcceEeehHHHHHHHHhcc---cchhhccceEEEe
Confidence 999999999999999998766555 677775543 44789999999999999655 3447889999999
Q ss_pred ccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccc
Q 009003 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLK 422 (547)
Q Consensus 349 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~ 422 (547)
|+|.+-+....-.++.++-+|| ...++|++|||++++.+|+.|+.+..-+
T Consensus 411 EVHYiND~eRGvVWEEViIMlP------------------------~HV~~IlLSATVPN~~EFA~WIGRtK~K 460 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLP------------------------RHVNFILLSATVPNTLEFADWIGRTKQK 460 (1248)
T ss_pred eeeecccccccccceeeeeecc------------------------ccceEEEEeccCCChHHHHHHhhhccCc
Confidence 9999988777777888888888 7899999999999999999999774433
No 93
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.9e-19 Score=198.53 Aligned_cols=173 Identities=22% Similarity=0.280 Sum_probs=141.1
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEE
Q 009003 189 SIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRAL 268 (547)
Q Consensus 189 ~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (547)
.....+| .|.++|++++..+- .|..|++|||||||||++.-..+...+.. +-+++
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Le-r~esVlV~ApTssGKTvVaeyAi~~al~~-----------------------~qrvi 166 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILE-RGESVLVCAPTSSGKTVVAEYAIALALRD-----------------------GQRVI 166 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHh-CCCcEEEEccCCCCcchHHHHHHHHHHHc-----------------------CCceE
Confidence 3456777 79999999997774 89999999999999999855554444322 34699
Q ss_pred EEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEe
Q 009003 269 IITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348 (547)
Q Consensus 269 il~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViD 348 (547)
+++|.++|.+|.++.|......+.-.+++++|+... .....|+|+|-+.|..++-.+ ...+..+.+||+|
T Consensus 167 YTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg---~~~~~~i~~ViFD 236 (1041)
T COG4581 167 YTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRG---SESLRDIEWVVFD 236 (1041)
T ss_pred eccchhhhhhhHHHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccC---cccccccceEEEE
Confidence 999999999999999986654442334566676543 356889999999999998544 5778999999999
Q ss_pred ccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcc
Q 009003 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 420 (547)
Q Consensus 349 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 420 (547)
|+|.|.+....-.++.++-++| ...|+|+||||++++.+|..|+....
T Consensus 237 EvHyi~D~eRG~VWEE~Ii~lP------------------------~~v~~v~LSATv~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 237 EVHYIGDRERGVVWEEVIILLP------------------------DHVRFVFLSATVPNAEEFAEWIQRVH 284 (1041)
T ss_pred eeeeccccccchhHHHHHHhcC------------------------CCCcEEEEeCCCCCHHHHHHHHHhcc
Confidence 9999999888888899999998 77899999999999999999997544
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.82 E-value=1.4e-18 Score=182.25 Aligned_cols=269 Identities=22% Similarity=0.262 Sum_probs=187.6
Q ss_pred CCCCHHHHH-HHHHcCCCCCcHHHHHHHHHHHhc-----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 180 LRLHPLLMK-SIYRLQFKEPTPIQKACIPAAAHQ-----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 180 l~l~~~l~~-~l~~~~~~~~~~iQ~~~i~~~l~~-----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
+.....+++ .+..+.| .+|..|++++..|... ..+-|++|.-|||||++.++.++..+-
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-------------- 309 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-------------- 309 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--------------
Confidence 344455444 4466888 8999999999998631 135589999999999999999988762
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHH
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELM 329 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l 329 (547)
.|.++..++||--||.|-++.+.++...+++++..++|..........+ ....+|+|+|- -++
T Consensus 310 ---------~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH----ALi 376 (677)
T COG1200 310 ---------AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH----ALI 376 (677)
T ss_pred ---------cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc----hhh
Confidence 3578999999999999999999999999999999999998876654433 34599999994 333
Q ss_pred hcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCC-CcEEEEEeccCCC
Q 009003 330 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRK-KRQTLVFSATIAL 408 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~i~~SATl~~ 408 (547)
... ..++++.++||||=|++.-.+. ..+..+ . . .+.+++||||+-
T Consensus 377 Qd~----V~F~~LgLVIiDEQHRFGV~QR----~~L~~K-G------------------------~~~Ph~LvMTATPI- 422 (677)
T COG1200 377 QDK----VEFHNLGLVIIDEQHRFGVHQR----LALREK-G------------------------EQNPHVLVMTATPI- 422 (677)
T ss_pred hcc----eeecceeEEEEeccccccHHHH----HHHHHh-C------------------------CCCCcEEEEeCCCc-
Confidence 332 7789999999999999763221 122211 1 1 357899999954
Q ss_pred ChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh-cCCC
Q 009003 409 SADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV-HGQG 487 (547)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~ 487 (547)
..+++-...-.-+..+++-.+... ..|....+. ...+..++..+... ..+.
T Consensus 423 ------------------------PRTLAlt~fgDldvS~IdElP~GR--kpI~T~~i~--~~~~~~v~e~i~~ei~~Gr 474 (677)
T COG1200 423 ------------------------PRTLALTAFGDLDVSIIDELPPGR--KPITTVVIP--HERRPEVYERIREEIAKGR 474 (677)
T ss_pred ------------------------hHHHHHHHhccccchhhccCCCCC--CceEEEEec--cccHHHHHHHHHHHHHcCC
Confidence 344443322233333343322221 124444443 23333333333322 2567
Q ss_pred cEEEEeCChHH--------HHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 488 RTIVFCTSIAA--------LRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 488 k~LVF~~s~~~--------a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++.|.|+-+++ |..++..|+.. ++++..+||.|+.+++.++|.+|+++...
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 89999988754 55677777754 66799999999999999999999998654
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.81 E-value=3.8e-19 Score=171.94 Aligned_cols=275 Identities=20% Similarity=0.239 Sum_probs=191.2
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 009003 179 ELRLHPLLMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAE 257 (547)
Q Consensus 179 ~l~l~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~ 257 (547)
+++.+......|+. +....++|.|..+|...+ .|.++++..|||.||+++|+||+|-.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~a-------------------- 133 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALCA-------------------- 133 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHhc--------------------
Confidence 45666666666655 456789999999999987 79999999999999999999998853
Q ss_pred hcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH---Hhc---CCCcEEEeChHHHHH---H
Q 009003 258 KYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER---LLK---ARPEVVVGTPGRLWE---L 328 (547)
Q Consensus 258 ~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~---~~~dIlv~TP~~l~~---~ 328 (547)
...+|||+|..+|+....-.++.+ |+....+...++...-.+ .+. ....++..||+.+.. +
T Consensus 134 ------dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~ 203 (695)
T KOG0353|consen 134 ------DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF 203 (695)
T ss_pred ------CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH
Confidence 346999999999999988888887 777777776666544322 222 246799999999842 2
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcCC-----hHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEe
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFS 403 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~~-----~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 403 (547)
|+. -.+.+....+.++-|||+|+-..||+ +..+.-+-+.+ +...+|+++
T Consensus 204 mnk-leka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf-------------------------~~~~iiglt 257 (695)
T KOG0353|consen 204 MNK-LEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------KGAPIIGLT 257 (695)
T ss_pred HHH-HHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC-------------------------CCCceeeee
Confidence 322 22335567788999999999998886 34444444444 456799999
Q ss_pred ccCCCCh--hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc--cchHHHHHH
Q 009003 404 ATIALSA--DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE--EDKDAYLYY 479 (547)
Q Consensus 404 ATl~~~~--~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ 479 (547)
||..+.. +....|. ++ .-+.++. ....+++...++.-+. .+-..-+..
T Consensus 258 atatn~vl~d~k~il~---------------ie---~~~tf~a----------~fnr~nl~yev~qkp~n~dd~~edi~k 309 (695)
T KOG0353|consen 258 ATATNHVLDDAKDILC---------------IE---AAFTFRA----------GFNRPNLKYEVRQKPGNEDDCIEDIAK 309 (695)
T ss_pred hhhhcchhhHHHHHHh---------------HH---hhheeec----------ccCCCCceeEeeeCCCChHHHHHHHHH
Confidence 9976322 1111110 11 0011111 0111223222232222 233344455
Q ss_pred HHH-hcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 480 ILS-VHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 480 ll~-~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+++ .+.+...||||-+++.|+.++..|+.+|+.+..||+.|.+.+|.-+...|..|...
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq 369 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ 369 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceE
Confidence 554 34567899999999999999999999999999999999999999998888877654
No 96
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.80 E-value=3.6e-18 Score=160.12 Aligned_cols=168 Identities=40% Similarity=0.602 Sum_probs=133.9
Q ss_pred HcCCCCCcHHHHHHHHHHHhcC-CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEE
Q 009003 192 RLQFKEPTPIQKACIPAAAHQG-KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~-~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 270 (547)
..++..|+++|.+++..++ +. +.++++++||+|||.+++.+++..+... ...++||+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------------------~~~~~l~~ 60 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG---------------------KGKRVLVL 60 (201)
T ss_pred ccCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc---------------------CCCcEEEE
Confidence 3467789999999999997 56 8999999999999999999888876332 13479999
Q ss_pred ccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCC-cEEEeChHHHHHHHhcCCCCcccCCCccEEEEec
Q 009003 271 TPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARP-EVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 349 (547)
Q Consensus 271 ~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDE 349 (547)
+||+.++.|+...+..+..........+.++.........+..+. +|+++|++.+...+... ......+.++||||
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~---~~~~~~~~~iIiDE 137 (201)
T smart00487 61 VPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND---LLELSNVDLVILDE 137 (201)
T ss_pred eCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC---CcCHhHCCEEEEEC
Confidence 999999999999999887665544455555555444444455555 99999999999988653 24567889999999
Q ss_pred cchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 350 ADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 350 ah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
||.+....+...+..++..++ ...+++++|||++.
T Consensus 138 ~h~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~saT~~~ 172 (201)
T smart00487 138 AHRLLDGGFGDQLEKLLKLLP------------------------KNVQLLLLSATPPE 172 (201)
T ss_pred HHHHhcCCcHHHHHHHHHhCC------------------------ccceEEEEecCCch
Confidence 999985578888888888774 56789999999973
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1e-17 Score=182.51 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=104.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. .|+++|.-.--. |++ --|+.++||.|||++|.+|++...+. +..|.||+|
T Consensus 79 lgm-~~ydVQliGgl~-L~~--G~IaEm~TGEGKTL~a~lp~~l~al~-----------------------g~~VhIvT~ 131 (908)
T PRK13107 79 FEM-RHFDVQLLGGMV-LDS--NRIAEMRTGEGKTLTATLPAYLNALT-----------------------GKGVHVITV 131 (908)
T ss_pred hCC-CcCchHHhcchH-hcC--CccccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEeC
Confidence 455 788888766533 344 44889999999999999999876532 335999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCCC---CcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~~---~~~~l~~l~~lViD 348 (547)
+..||.|..+.+..+...+|+++.++.++.+.... .-.-.+||+++||+.| +++|...-. .-.....+.++|||
T Consensus 132 ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvD 209 (908)
T PRK13107 132 NDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALID 209 (908)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeec
Confidence 99999999999999999999999999999887432 2233789999999999 888754311 01124778999999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|||.||
T Consensus 210 EvDsiL 215 (908)
T PRK13107 210 EVDSIL 215 (908)
T ss_pred chhhhc
Confidence 999986
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=2.4e-17 Score=175.76 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=94.1
Q ss_pred EEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEE
Q 009003 217 IGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296 (547)
Q Consensus 217 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~ 296 (547)
|+.|+||||||.+|+..+...+ . .+.++|||+|+++|+.|+++.|+.. ++.++.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~----------------------~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~ 54 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A----------------------LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVA 54 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H----------------------cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEE
Confidence 4789999999999866544433 1 1357999999999999999999875 356788
Q ss_pred EEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCC------hHHHHHHH
Q 009003 297 PIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH------FRELQSII 366 (547)
Q Consensus 297 ~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~------~~~l~~i~ 366 (547)
.++++.+....... .....+|+|+|+..+. ..++++.+|||||+|...-.+. ...+..++
T Consensus 55 vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r 124 (505)
T TIGR00595 55 VLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR 124 (505)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH
Confidence 89998876544332 2346899999998763 3467889999999998753221 12333344
Q ss_pred HhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 367 DMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 367 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
... ...++|++|||++
T Consensus 125 a~~-------------------------~~~~vil~SATPs 140 (505)
T TIGR00595 125 AKK-------------------------FNCPVVLGSATPS 140 (505)
T ss_pred HHh-------------------------cCCCEEEEeCCCC
Confidence 443 3568999999955
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.8e-17 Score=180.49 Aligned_cols=239 Identities=21% Similarity=0.261 Sum_probs=158.3
Q ss_pred HHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHH----HH
Q 009003 206 IPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQ----VT 281 (547)
Q Consensus 206 i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q----v~ 281 (547)
|-.++.+.+.+||+|+|||||| .++| +.++.... ....++.++-|.|--|.- ++
T Consensus 58 i~~ai~~~~vvii~getGsGKT--TqlP--~~lle~g~------------------~~~g~I~~tQPRRlAArsvA~RvA 115 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKT--TQLP--QFLLEEGL------------------GIAGKIGCTQPRRLAARSVAERVA 115 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChH--HHHH--HHHHhhhc------------------ccCCeEEecCchHHHHHHHHHHHH
Confidence 3344457889999999999999 5566 33433321 223467888898844444 44
Q ss_pred HHHHH-hhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh-hcCC-
Q 009003 282 DHLKG-VAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI-ENGH- 358 (547)
Q Consensus 282 ~~l~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll-~~~~- 358 (547)
+++.. .+..+||++ ++......++.|.|+|.|.|++.+.++ ..|+.+++|||||||.-. +..+
T Consensus 116 eel~~~~G~~VGY~i----------Rfe~~~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDil 181 (845)
T COG1643 116 EELGEKLGETVGYSI----------RFESKVSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDIL 181 (845)
T ss_pred HHhCCCcCceeeEEE----------EeeccCCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHH
Confidence 44442 344467776 455566678899999999999999876 669999999999999853 1111
Q ss_pred hHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHH
Q 009003 359 FRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSE 438 (547)
Q Consensus 359 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~ 438 (547)
...+..++...+ ...++|+||||+. .+.++.
T Consensus 182 Lgllk~~~~~rr------------------------~DLKiIimSATld-------------------------~~rfs~ 212 (845)
T COG1643 182 LGLLKDLLARRR------------------------DDLKLIIMSATLD-------------------------AERFSA 212 (845)
T ss_pred HHHHHHHHhhcC------------------------CCceEEEEecccC-------------------------HHHHHH
Confidence 223333343333 4589999999987 344444
Q ss_pred HhcccCceeEEeccccccccccceEEEEEcc-ccc-hHHHHHHHHH---hcCCCcEEEEeCChHHHHHHHHHHHH--c--
Q 009003 439 RAGMRANVAIVDLTNMCVLANKLEESFIECK-EED-KDAYLYYILS---VHGQGRTIVFCTSIAALRHISSLLKI--L-- 509 (547)
Q Consensus 439 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll~---~~~~~k~LVF~~s~~~a~~L~~~L~~--~-- 509 (547)
.++ +..++.+....++.. .+|.... ..+ -...+...+. ....|.+|||.+++.+++.+++.|.. +
T Consensus 213 ~f~---~apvi~i~GR~fPVe---i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~ 286 (845)
T COG1643 213 YFG---NAPVIEIEGRTYPVE---IRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGD 286 (845)
T ss_pred HcC---CCCEEEecCCccceE---EEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccC
Confidence 332 244444444433332 3332222 233 3334444443 44689999999999999999999997 3
Q ss_pred CCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 510 GIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 510 g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
.+.+..+||.|+..+..++++--..+
T Consensus 287 ~~~i~PLy~~L~~~eQ~rvF~p~~~~ 312 (845)
T COG1643 287 DLEILPLYGALSAEEQVRVFEPAPGG 312 (845)
T ss_pred CcEEeeccccCCHHHHHhhcCCCCCC
Confidence 47899999999999999977644333
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.76 E-value=2.7e-17 Score=184.26 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=65.9
Q ss_pred cchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH-HcCCceEEecCCcCHHHHHHHHHHHHhhh------hcCCCCC
Q 009003 471 EDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLK-ILGIDVWTLHAQMQQRARLKLFSQMITWI------RKRPKGD 543 (547)
Q Consensus 471 ~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~-~~g~~v~~lhg~m~~~eR~~il~~F~~~~------~k~~~g~ 543 (547)
..|...|..+++.+...++||||+++..+..|+..|+ ..|+.+..|||+|++.+|.++++.|+++. .-.-.|+
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 3467788888888878899999999999999999994 57999999999999999999999999742 3345677
Q ss_pred CCCC
Q 009003 544 RGKD 547 (547)
Q Consensus 544 ~~~~ 547 (547)
+|.|
T Consensus 558 eGlN 561 (956)
T PRK04914 558 EGRN 561 (956)
T ss_pred cCCC
Confidence 8764
No 101
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=6.3e-18 Score=175.96 Aligned_cols=279 Identities=18% Similarity=0.168 Sum_probs=183.0
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.+.|.|..+|..+ .++..|++.|.|.+|||.++-.+|.+.|... -|||+..|-++|
T Consensus 129 ~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------------------QRVIYTSPIKAL 184 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------------------QRVIYTSPIKAL 184 (1041)
T ss_pred ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------------------CeEEeeChhhhh
Confidence 7889999999776 6899999999999999999777777766332 389999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~ 356 (547)
.+|-|++|..-...+| +++|+... ......+|+|.+.|..++-++ .--+..+.|||+||+|.|-|.
T Consensus 185 SNQKYREl~~EF~DVG----LMTGDVTI-------nP~ASCLVMTTEILRsMLYRG---SEvmrEVaWVIFDEIHYMRDk 250 (1041)
T KOG0948|consen 185 SNQKYRELLEEFKDVG----LMTGDVTI-------NPDASCLVMTTEILRSMLYRG---SEVMREVAWVIFDEIHYMRDK 250 (1041)
T ss_pred cchhHHHHHHHhcccc----eeecceee-------CCCCceeeeHHHHHHHHHhcc---chHhheeeeEEeeeehhcccc
Confidence 9999999987666555 45565443 345779999999999988544 345788999999999999876
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccC---CcchH
Q 009003 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVN---GLNSI 433 (547)
Q Consensus 357 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~---~~~~i 433 (547)
..+-.++.-+-.|| ...+.+++|||+|+..+|+.|+....-.....+. .+-++
T Consensus 251 ERGVVWEETIIllP------------------------~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPL 306 (1041)
T KOG0948|consen 251 ERGVVWEETIILLP------------------------DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPL 306 (1041)
T ss_pred ccceeeeeeEEecc------------------------ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcc
Confidence 65544555444555 6789999999999999999999653322222111 00111
Q ss_pred HHHHHHhcccCceeEEecccccccccc-------ce------------EEEEE------ccccchHHHHHHHHHhcCCCc
Q 009003 434 ETLSERAGMRANVAIVDLTNMCVLANK-------LE------------ESFIE------CKEEDKDAYLYYILSVHGQGR 488 (547)
Q Consensus 434 ~~l~~~~~~~~~~~~i~~~~~~~~~~~-------i~------------~~~~~------~~~~~k~~~l~~ll~~~~~~k 488 (547)
+.+....+-..-+.+++-.... ...+ +. ..... .....-...+..++-.....+
T Consensus 307 QHyifP~ggdGlylvVDek~~F-rednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~P 385 (1041)
T KOG0948|consen 307 QHYIFPAGGDGLYLVVDEKGKF-REDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLP 385 (1041)
T ss_pred eeeeecCCCCeeEEEEeccccc-chHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCc
Confidence 1111111111111122111000 0000 00 00000 000001112233333445679
Q ss_pred EEEEeCChHHHHHHHHHHHHcCC---------------------------------------ceEEecCCcCHHHHHHHH
Q 009003 489 TIVFCTSIAALRHISSLLKILGI---------------------------------------DVWTLHAQMQQRARLKLF 529 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~g~---------------------------------------~v~~lhg~m~~~eR~~il 529 (547)
+|||+-++++|+.+|-.+..+.+ .+.++|||+-+--++-|.
T Consensus 386 VIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IE 465 (1041)
T KOG0948|consen 386 VIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIE 465 (1041)
T ss_pred eEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHH
Confidence 99999999999999977743221 256789999988888888
Q ss_pred HHHHhhhhc
Q 009003 530 SQMITWIRK 538 (547)
Q Consensus 530 ~~F~~~~~k 538 (547)
=-|.+|+.|
T Consensus 466 ILFqEGLvK 474 (1041)
T KOG0948|consen 466 ILFQEGLVK 474 (1041)
T ss_pred HHHhccHHH
Confidence 889888776
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.74 E-value=1.7e-16 Score=181.79 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHh----cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 197 EPTPIQKACIPAAAH----QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~----~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.++++|..||..+.. ..+.+|++++||||||.+. +.++..+++. ....++|||+|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~--------------------~~~~rVLfLvD 471 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA--------------------KRFRRILFLVD 471 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc--------------------CccCeEEEEec
Confidence 589999999987652 3468999999999999773 3344554332 12358999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC--CcccCCCccEEEEecc
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK--HLVELHTLSFFVLDEA 350 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~--~~~~l~~l~~lViDEa 350 (547)
+++|+.|+.+.|..+....+..+..+++.... ..........|+|||...|...+..... ..+.+..+++||||||
T Consensus 472 R~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L--~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEa 549 (1123)
T PRK11448 472 RSALGEQAEDAFKDTKIEGDQTFASIYDIKGL--EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEA 549 (1123)
T ss_pred HHHHHHHHHHHHHhcccccccchhhhhchhhh--hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECC
Confidence 99999999999998732222111111111100 1111234578999999999776532211 1245778899999999
Q ss_pred chh
Q 009003 351 DRM 353 (547)
Q Consensus 351 h~l 353 (547)
|+-
T Consensus 550 HRs 552 (1123)
T PRK11448 550 HRG 552 (1123)
T ss_pred CCC
Confidence 985
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.74 E-value=6.9e-17 Score=168.05 Aligned_cols=240 Identities=22% Similarity=0.237 Sum_probs=160.9
Q ss_pred HHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH----HHHHHHHHHH
Q 009003 209 AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR----ELALQVTDHL 284 (547)
Q Consensus 209 ~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr----~La~qv~~~l 284 (547)
.+++++-+|+.|+|||||| .++| |.|++.+. ....++.+..|.| +||.+|..++
T Consensus 62 ~ve~nqvlIviGeTGsGKS--TQip--QyL~eaG~------------------~~~g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 62 AVEDNQVLIVIGETGSGKS--TQIP--QYLAEAGF------------------ASSGKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred HHHHCCEEEEEcCCCCCcc--ccHh--HHHHhccc------------------ccCCcEEeecCchHHHHHHHHHHHHHh
Confidence 3457889999999999999 7788 77766532 1223478888988 5666666665
Q ss_pred H-HhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHH
Q 009003 285 K-GVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 363 (547)
Q Consensus 285 ~-~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~ 363 (547)
. .++..+|+.+ ++.......+.|.++|.|.|++.+..+ ..|+.+++|||||||.-. =+.+.+.
T Consensus 120 ~~~lG~~VGY~I----------RFed~ts~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERs--l~TDiLl 183 (674)
T KOG0922|consen 120 GCQLGEEVGYTI----------RFEDSTSKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERS--LHTDILL 183 (674)
T ss_pred CCCcCceeeeEE----------EecccCCCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhh--hHHHHHH
Confidence 5 3455567766 445555557889999999999988665 669999999999999853 1233333
Q ss_pred HHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhccc
Q 009003 364 SIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMR 443 (547)
Q Consensus 364 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 443 (547)
-+++.+-.. +...++|+||||+. .+.++..+.
T Consensus 184 GlLKki~~~---------------------R~~LklIimSATld-------------------------a~kfS~yF~-- 215 (674)
T KOG0922|consen 184 GLLKKILKK---------------------RPDLKLIIMSATLD-------------------------AEKFSEYFN-- 215 (674)
T ss_pred HHHHHHHhc---------------------CCCceEEEEeeeec-------------------------HHHHHHHhc--
Confidence 444333211 14579999999987 344444432
Q ss_pred CceeEEeccccccccccceEEEEEcc-ccchHHHH---HHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc----CC----
Q 009003 444 ANVAIVDLTNMCVLANKLEESFIECK-EEDKDAYL---YYILSVHGQGRTIVFCTSIAALRHISSLLKIL----GI---- 511 (547)
Q Consensus 444 ~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l---~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~----g~---- 511 (547)
+..++.+.....+.. .+|...+ .++-.+.+ ..++...++|-+|||.+++++++.+++.|... +-
T Consensus 216 -~a~i~~i~GR~fPVe---i~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~ 291 (674)
T KOG0922|consen 216 -NAPILTIPGRTFPVE---ILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE 291 (674)
T ss_pred -CCceEeecCCCCcee---EEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc
Confidence 234454454433332 3333322 23333333 44444567899999999999999999999774 21
Q ss_pred ceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 512 DVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 512 ~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
-+..+||.|+.++..++++----|.+|
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RK 318 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRK 318 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcce
Confidence 247899999999999988755544444
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.72 E-value=1.6e-15 Score=167.98 Aligned_cols=267 Identities=20% Similarity=0.238 Sum_probs=194.2
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHh---c--CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 181 RLHPLLMKSIYR-LQFKEPTPIQKACIPAAAH---Q--GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 181 ~l~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~---~--~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
..+......+.. ++| .-|+-|..||..+.. + -.|-|+||.-|-|||-+++-++.-.+.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--------------- 641 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--------------- 641 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---------------
Confidence 455555555554 566 679999999998853 2 357899999999999988777766652
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHHHHHHh
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~ 330 (547)
.|.+|.|||||.-||.|-++.|+....+++++|..+.--.+.+.+...+. +..||||+| ..+|+
T Consensus 642 --------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~ 709 (1139)
T COG1197 642 --------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLS 709 (1139)
T ss_pred --------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhC
Confidence 35689999999999999999999999999999999988777777665543 479999999 56665
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
.+ +.++++.+|||||=|+.. ....+.+..+.. ..-++-||||+-+.
T Consensus 710 kd----v~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr~----------------------------~VDvLTLSATPIPR- 755 (1139)
T COG1197 710 KD----VKFKDLGLLIIDEEQRFG-VKHKEKLKELRA----------------------------NVDVLTLSATPIPR- 755 (1139)
T ss_pred CC----cEEecCCeEEEechhhcC-ccHHHHHHHHhc----------------------------cCcEEEeeCCCCcc-
Confidence 54 788999999999999987 666777777763 45689999996421
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccc-hHHHHHHHHHhcCCCcE
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED-KDAYLYYILSVHGQGRT 489 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~ 489 (547)
++-.-..--.+..++..++....+ ++.++......- +.+++..+. .+|.+
T Consensus 756 ------------------------TL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~~~d~~~ireAI~REl~---RgGQv 806 (1139)
T COG1197 756 ------------------------TLNMSLSGIRDLSVIATPPEDRLP--VKTFVSEYDDLLIREAILRELL---RGGQV 806 (1139)
T ss_pred ------------------------hHHHHHhcchhhhhccCCCCCCcc--eEEEEecCChHHHHHHHHHHHh---cCCEE
Confidence 111110011222334333332221 333333322221 222222222 47899
Q ss_pred EEEeCChHHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 490 IVFCTSIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
-..+|.++.++.++..|+.+ ..++.+.||.|+..+-+++|..|.+|...
T Consensus 807 fYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d 857 (1139)
T COG1197 807 FYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD 857 (1139)
T ss_pred EEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999997 56899999999999999999999998653
No 105
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.72 E-value=1.8e-15 Score=172.03 Aligned_cols=98 Identities=26% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHH---HHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPA---AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEK 258 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~---~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~ 258 (547)
+++.+...+...||. +++.|.+.+.. .+.+++++++.||||+|||++|++|++.++.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------------- 290 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------------- 290 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-------------------
Confidence 345677788888985 89999986653 3446899999999999999999999988752
Q ss_pred cCCCCCeEEEEEccCHHHHHHHHH-HHHHhhcCCC--cEEEEEEcCCC
Q 009003 259 YAPKGHLRALIITPTRELALQVTD-HLKGVAKGIN--VRVVPIVGGMS 303 (547)
Q Consensus 259 ~~~~~~~~~lil~Ptr~La~qv~~-~l~~~~~~~~--~~v~~~~g~~~ 303 (547)
.+.++||.+||++|..|+.. .+..+.+.++ ++++++.|+.+
T Consensus 291 ----~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 291 ----TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred ----CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 13479999999999999866 5666655444 77887777764
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.70 E-value=6.7e-17 Score=173.49 Aligned_cols=303 Identities=17% Similarity=0.155 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHH--HHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 009003 180 LRLHPLLMKSIYRLQFKEPTPIQKACI--PAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAE 257 (547)
Q Consensus 180 l~l~~~l~~~l~~~~~~~~~~iQ~~~i--~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~ 257 (547)
.+++....-.....|+..++.||.+++ |.++ .++++|+.+||+.|||++.-+-++..++-.+.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr-------------- 270 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-------------- 270 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh--------------
Confidence 344444555556688889999999997 5666 78999999999999999998888887766542
Q ss_pred hcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcc
Q 009003 258 KYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLV 337 (547)
Q Consensus 258 ~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~ 337 (547)
.++.++|...-+..-...+..++...|+.+-...|...+... ....+|.|||-++-..++..-- ..-
T Consensus 271 --------~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~li-e~g 337 (1008)
T KOG0950|consen 271 --------NVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLI-EQG 337 (1008)
T ss_pred --------ceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHH-hcC
Confidence 589999999999888888999988899998877766554322 2346899999998876664321 112
Q ss_pred cCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhh
Q 009003 338 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 417 (547)
Q Consensus 338 ~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 417 (547)
.+..+.+|||||.|.+.+.+....++.++..+--.+. . ...|+|+||||+++-..+..|+.
T Consensus 338 ~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~---------------~----~~~~iIGMSATi~N~~lL~~~L~ 398 (1008)
T KOG0950|consen 338 RLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENL---------------E----TSVQIIGMSATIPNNSLLQDWLD 398 (1008)
T ss_pred CccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcc---------------c----cceeEeeeecccCChHHHHHHhh
Confidence 3678899999999999999998888888876531111 1 23789999999999999999987
Q ss_pred hcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh-cC-CCcEEEEeCC
Q 009003 418 HGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV-HG-QGRTIVFCTS 495 (547)
Q Consensus 418 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~-~~k~LVF~~s 495 (547)
............+.... .+...+.... ......++...+.......-.+.++.++.. .+ +.++||||++
T Consensus 399 A~~y~t~fRPv~L~E~i--------k~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~s 469 (1008)
T KOG0950|consen 399 AFVYTTRFRPVPLKEYI--------KPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPS 469 (1008)
T ss_pred hhheecccCcccchhcc--------CCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCc
Confidence 54433322221110000 0000011100 000000011001000010111233333322 12 3469999999
Q ss_pred hHHHHHHHHHHHH--------------------------------------cCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 496 IAALRHISSLLKI--------------------------------------LGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 496 ~~~a~~L~~~L~~--------------------------------------~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
+.-|+.++..+.. ..+.|+++|++++..+|..+...|++|..
T Consensus 470 k~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i 549 (1008)
T KOG0950|consen 470 KKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNI 549 (1008)
T ss_pred ccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCe
Confidence 9999887755511 12458899999999999999999999865
Q ss_pred c
Q 009003 538 K 538 (547)
Q Consensus 538 k 538 (547)
.
T Consensus 550 ~ 550 (1008)
T KOG0950|consen 550 F 550 (1008)
T ss_pred E
Confidence 3
No 107
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.1e-15 Score=162.85 Aligned_cols=283 Identities=18% Similarity=0.189 Sum_probs=178.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|+ .|...|+--...++ .|++.-+.||||.|||.--++..+-.. ..+-+++||+|
T Consensus 79 ~G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a-----------------------~kgkr~yii~P 133 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLA-----------------------KKGKRVYIIVP 133 (1187)
T ss_pred hCC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHH-----------------------hcCCeEEEEec
Confidence 455 89999998888887 799999999999999954333222211 12458999999
Q ss_pred CHHHHHHHHHHHHHhhcCCC-cEEEE-EEcCCCHHHHHH----HhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEE
Q 009003 273 TRELALQVTDHLKGVAKGIN-VRVVP-IVGGMSTEKQER----LLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~-~~v~~-~~g~~~~~~~~~----~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lV 346 (547)
|..|+.|+++.+.+++...+ +.+.+ .++......... .-.++.||+|+|-.-|...+..- .--++++++
T Consensus 134 T~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L-----~~~kFdfif 208 (1187)
T COG1110 134 TTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL-----SKLKFDFIF 208 (1187)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh-----cccCCCEEE
Confidence 99999999999999987665 44443 556655544332 22357999999988886555321 112679999
Q ss_pred EeccchhhhcCChHHHHHHHHhCCCCCCC--------------CCCCCcccccc------cccccccCCCcEEEEEeccC
Q 009003 347 LDEADRMIENGHFRELQSIIDMLPMTNGS--------------NKGQSEQTQNC------VTVSSLQRKKRQTLVFSATI 406 (547)
Q Consensus 347 iDEah~ll~~~~~~~l~~i~~~l~~~~~~--------------~~~~~~~~~~~------~~~~~~~~~~~q~i~~SATl 406 (547)
+|.+|.++..+ ..+..++..+.-.... .......+.+- ........+.-++|+.|||.
T Consensus 209 VDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg 286 (1187)
T COG1110 209 VDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATG 286 (1187)
T ss_pred EccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccC
Confidence 99999987533 2333333332210000 00000000000 00011223567899999998
Q ss_pred CCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCC
Q 009003 407 ALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQ 486 (547)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 486 (547)
.....-...+ -.-++|... .......+|...|+.. .-...+..+++..+.
T Consensus 287 ~~rg~R~~Lf--------------------ReLlgFevG-------~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~ 336 (1187)
T COG1110 287 KPRGSRLKLF--------------------RELLGFEVG-------SGGEGLRNIVDIYVES---ESLEKVVELVKKLGD 336 (1187)
T ss_pred CCCCchHHHH--------------------HHHhCCccC-------ccchhhhheeeeeccC---ccHHHHHHHHHHhCC
Confidence 7443211111 111222211 1112233455555544 445556677777644
Q ss_pred CcEEEEeCC---hHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCCC
Q 009003 487 GRTIVFCTS---IAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKGD 543 (547)
Q Consensus 487 ~k~LVF~~s---~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g~ 543 (547)
.+|||++. ++.++.|+++|+.+|+++..+|+. ..+.++.|..|......|-
T Consensus 337 -GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGv 390 (1187)
T COG1110 337 -GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGV 390 (1187)
T ss_pred -CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEe
Confidence 88999999 999999999999999999999983 4788999999987766553
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.68 E-value=1.5e-15 Score=169.36 Aligned_cols=274 Identities=19% Similarity=0.192 Sum_probs=166.1
Q ss_pred CCcHHHHHHHHHHHh--cCC-cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAAH--QGK-DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~--~~~-dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.+.+.|..++..++. ... .+++.||||+|||.+.+++++..+... .....+++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------------------~~~~~r~i~vlP~ 255 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------------------IKLKSRVIYVLPF 255 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------------------ccccceEEEEccH
Confidence 347889988877753 234 789999999999999999888766431 1245799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH-----h---------cCCCcEEEeChHHHHHHHhcCCCCcc-c
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL-----L---------KARPEVVVGTPGRLWELMSGGEKHLV-E 338 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~-----~---------~~~~dIlv~TP~~l~~~l~~~~~~~~-~ 338 (547)
+.++.++++.++......++....++|.......... . ..-..++++||..+...........+ .
T Consensus 256 ~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (733)
T COG1203 256 RTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLA 335 (733)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHH
Confidence 9999999999998765444433322333322111111 0 01245677777666553322222211 1
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 418 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 418 (547)
+-..+.+|+||+|.+-+......+..++..+.. ....+|+||||+| ..+...+
T Consensus 336 ~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~-----------------------~g~~ill~SATlP--~~~~~~l-- 388 (733)
T COG1203 336 LLLTSLVILDEVHLYADETMLAALLALLEALAE-----------------------AGVPVLLMSATLP--PFLKEKL-- 388 (733)
T ss_pred HHHhhchhhccHHhhcccchHHHHHHHHHHHHh-----------------------CCCCEEEEecCCC--HHHHHHH--
Confidence 112378999999988755466666666666542 3567999999998 2222222
Q ss_pred cccccccccCCcchHHHHHHHhcccCceeEEeccccccccc--cceEEE-EEccccchHHHHHHHHH-hcCCCcEEEEeC
Q 009003 419 GSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLAN--KLEESF-IECKEEDKDAYLYYILS-VHGQGRTIVFCT 494 (547)
Q Consensus 419 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~--~i~~~~-~~~~~~~k~~~l~~ll~-~~~~~k~LVF~~ 494 (547)
............... ...... .+.+.. ..............+.. ...+++++|.||
T Consensus 389 -------------------~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~N 448 (733)
T COG1203 389 -------------------KKALGKGREVVENAK-FCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVN 448 (733)
T ss_pred -------------------HHHHhcccceecccc-ccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEe
Confidence 111111111000000 000000 000000 00000000011111222 234689999999
Q ss_pred ChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhh
Q 009003 495 SIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWI 536 (547)
Q Consensus 495 s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~ 536 (547)
|+..|..++..|+..+..+.+|||.+...+|.+.++.++++.
T Consensus 449 TV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~ 490 (733)
T COG1203 449 TVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLF 490 (733)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHH
Confidence 999999999999998878999999999999999999998875
No 109
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.68 E-value=7.9e-15 Score=165.24 Aligned_cols=295 Identities=16% Similarity=0.181 Sum_probs=177.2
Q ss_pred CCcHHHHHHHHHHHh---cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAAH---QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~---~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.+.++|.+++..++. +|.+.|++..+|.|||+..+ .++..+...+ .....+|||||.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~-------------------~~~gp~LIVvP~ 228 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR-------------------GITGPHMVVAPK 228 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc-------------------CCCCCEEEEeCh
Confidence 689999999988753 57889999999999998643 3444443221 112358999997
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHH---HHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEecc
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQE---RLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEa 350 (547)
++..||.+++.+++. .++++.++|........ ......++|+|+|++.+...... +.--.+.+||||||
T Consensus 229 -SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEA 300 (1033)
T PLN03142 229 -STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEA 300 (1033)
T ss_pred -HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCc
Confidence 778999999999875 45666677654332211 11234689999999998654321 22235789999999
Q ss_pred chhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC--ChhHHHHhhhccccccccc-
Q 009003 351 DRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL--SADFRKKLKHGSLKSKQSV- 427 (547)
Q Consensus 351 h~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~--~~~~~~~l~~~~~~~~~~~- 427 (547)
|+| .+....+..++..+. ....+++|+|+-. ..++...+...........
T Consensus 301 HrI--KN~~Sklskalr~L~-------------------------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~ 353 (1033)
T PLN03142 301 HRI--KNENSLLSKTMRLFS-------------------------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE 353 (1033)
T ss_pred ccc--CCHHHHHHHHHHHhh-------------------------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHH
Confidence 998 444555666666664 2345889999642 2233333322111100000
Q ss_pred --------CC-------cchHHHHHHHhcccC-----------ce-eE--Eecccccc----------------------
Q 009003 428 --------NG-------LNSIETLSERAGMRA-----------NV-AI--VDLTNMCV---------------------- 456 (547)
Q Consensus 428 --------~~-------~~~i~~l~~~~~~~~-----------~~-~~--i~~~~~~~---------------------- 456 (547)
.. ...+..+...+.++. .. .+ +.+...+.
T Consensus 354 ~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~ 433 (1033)
T PLN03142 354 TFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKR 433 (1033)
T ss_pred HHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 00 000111111111110 00 00 11100000
Q ss_pred cc---ccc----eEEE-----------E----EccccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCc
Q 009003 457 LA---NKL----EESF-----------I----ECKEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKILGID 512 (547)
Q Consensus 457 ~~---~~i----~~~~-----------~----~~~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~g~~ 512 (547)
.. ..+ .|.+ . .+....|..+|..++... .+.++||||........|..+|...|+.
T Consensus 434 LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~ 513 (1033)
T PLN03142 434 LLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQ 513 (1033)
T ss_pred HHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCc
Confidence 00 000 0000 0 011234555666666533 4679999999999999999999999999
Q ss_pred eEEecCCcCHHHHHHHHHHHHh-------hhhcCCCCCCCC
Q 009003 513 VWTLHAQMQQRARLKLFSQMIT-------WIRKRPKGDRGK 546 (547)
Q Consensus 513 v~~lhg~m~~~eR~~il~~F~~-------~~~k~~~g~~~~ 546 (547)
+..+||+++..+|..++++|.+ ++.....|+.|+
T Consensus 514 y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 514 YCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred EEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 9999999999999999999964 234566777775
No 110
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=2.4e-15 Score=132.58 Aligned_cols=144 Identities=42% Similarity=0.583 Sum_probs=107.5
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCc
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~ 293 (547)
++++++++||+|||..++..+...... ....++||++|++.++.|+...+...... +.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---------------------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~ 58 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---------------------LKGGQVLVLAPTRELANQVAERLKELFGE-GI 58 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---------------------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-Cc
Confidence 468999999999999888777765422 12458999999999999999999988765 67
Q ss_pred EEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCC
Q 009003 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373 (547)
Q Consensus 294 ~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~ 373 (547)
.+..+.+...............+|+|+|++.+...+... ......+.++||||+|.+.................
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~---~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--- 132 (144)
T cd00046 59 KVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERL---KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP--- 132 (144)
T ss_pred EEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcC---CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC---
Confidence 787788777666555556678999999999998877543 23456789999999999975544333211222222
Q ss_pred CCCCCCCcccccccccccccCCCcEEEEEeccC
Q 009003 374 GSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406 (547)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 406 (547)
...+++++|||+
T Consensus 133 ---------------------~~~~~i~~saTp 144 (144)
T cd00046 133 ---------------------KDRQVLLLSATP 144 (144)
T ss_pred ---------------------ccceEEEEeccC
Confidence 457899999995
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=8.9e-16 Score=158.35 Aligned_cols=246 Identities=23% Similarity=0.275 Sum_probs=165.4
Q ss_pred HHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHH
Q 009003 202 QKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVT 281 (547)
Q Consensus 202 Q~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~ 281 (547)
-.+.+.++ ..++.+||.|.|||||| .++| |+|++.+. ...+-++-+..|.|-.|.-|.
T Consensus 270 kdell~av-~e~QVLiI~GeTGSGKT--TQiP--QyL~EaGy-----------------tk~gk~IgcTQPRRVAAmSVA 327 (902)
T KOG0923|consen 270 KDELLKAV-KEHQVLIIVGETGSGKT--TQIP--QYLYEAGY-----------------TKGGKKIGCTQPRRVAAMSVA 327 (902)
T ss_pred HHHHHHHH-HhCcEEEEEcCCCCCcc--cccc--HHHHhccc-----------------ccCCceEeecCcchHHHHHHH
Confidence 33445444 46888999999999999 7888 88876642 122344778889996666555
Q ss_pred HHHH-----HhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc
Q 009003 282 DHLK-----GVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356 (547)
Q Consensus 282 ~~l~-----~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~ 356 (547)
..+. +++..+|++| ++.....+++-|.++|.|.|++.+-.. .+|.+++++||||||.--
T Consensus 328 aRVA~EMgvkLG~eVGYsI----------RFEdcTSekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERT-- 391 (902)
T KOG0923|consen 328 ARVAEEMGVKLGHEVGYSI----------RFEDCTSEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERT-- 391 (902)
T ss_pred HHHHHHhCcccccccceEE----------EeccccCcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhh--
Confidence 4443 4555667776 445555567889999999999887654 789999999999999752
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHH
Q 009003 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETL 436 (547)
Q Consensus 357 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l 436 (547)
-+.+.+..++..+.. .+...++|+.|||+. .+.+
T Consensus 392 L~TDILfgLvKDIar---------------------~RpdLKllIsSAT~D-------------------------AekF 425 (902)
T KOG0923|consen 392 LHTDILFGLVKDIAR---------------------FRPDLKLLISSATMD-------------------------AEKF 425 (902)
T ss_pred hhhhHHHHHHHHHHh---------------------hCCcceEEeeccccC-------------------------HHHH
Confidence 122333333322211 015689999999986 3333
Q ss_pred HHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHH----
Q 009003 437 SERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVH---GQGRTIVFCTSIAALRHISSLLKI---- 508 (547)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~---~~~k~LVF~~s~~~a~~L~~~L~~---- 508 (547)
+. +..+..++..+...+++. -+|..+++ ++-.+++..++..| +.|-+|||.+.+++++.....|..
T Consensus 426 S~---fFDdapIF~iPGRRyPVd---i~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~ 499 (902)
T KOG0923|consen 426 SA---FFDDAPIFRIPGRRYPVD---IFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRR 499 (902)
T ss_pred HH---hccCCcEEeccCccccee---eecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHH
Confidence 33 334555566666555443 35555554 34455555555544 678999999999998877776654
Q ss_pred cC-----CceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 509 LG-----IDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 509 ~g-----~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
+| +-++.+|+.|+.....+|++---.|-+
T Consensus 500 LGski~eliv~PiYaNLPselQakIFePtP~gaR 533 (902)
T KOG0923|consen 500 LGSKIRELIVLPIYANLPSELQAKIFEPTPPGAR 533 (902)
T ss_pred hccccceEEEeeccccCChHHHHhhcCCCCCCce
Confidence 33 457899999999999998875444433
No 112
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.3e-14 Score=136.13 Aligned_cols=248 Identities=19% Similarity=0.200 Sum_probs=163.3
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAA---HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l---~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
++++.|+.+-..++ .+..++|+.|-||+|||-. +.+.++.+++ .|.++.|.+|.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~----------------------~G~~vciASPR 153 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN----------------------QGGRVCIASPR 153 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh----------------------cCCeEEEecCc
Confidence 78999987765543 3678999999999999965 3444555433 35789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
...|..++..++.-.. +..|.+++|++...-. ..++|||-..|+++- ..++++||||+|..
T Consensus 154 vDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk----------~aFD~liIDEVDAF 214 (441)
T COG4098 154 VDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK----------QAFDLLIIDEVDAF 214 (441)
T ss_pred ccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH----------hhccEEEEeccccc
Confidence 9999999999987654 4567889998766432 679999999998765 24589999999987
Q ss_pred hhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchH
Q 009003 354 IENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSI 433 (547)
Q Consensus 354 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i 433 (547)
- ...-..+....+.-.+ ..--+|.+|||.+ ..+.+.+..
T Consensus 215 P-~~~d~~L~~Av~~ark-----------------------~~g~~IylTATp~--k~l~r~~~~--------------- 253 (441)
T COG4098 215 P-FSDDQSLQYAVKKARK-----------------------KEGATIYLTATPT--KKLERKILK--------------- 253 (441)
T ss_pred c-ccCCHHHHHHHHHhhc-----------------------ccCceEEEecCCh--HHHHHHhhh---------------
Confidence 4 2223333333333221 3346899999977 222222221
Q ss_pred HHHHHHhcccCceeEEeccccccccccceEEEEEcc-ccchH------HHHHHHHHhc--CCCcEEEEeCChHHHHHHHH
Q 009003 434 ETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK-EEDKD------AYLYYILSVH--GQGRTIVFCTSIAALRHISS 504 (547)
Q Consensus 434 ~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~------~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~ 504 (547)
.+...+.++...+...-..-.++.+. ...+. ..|+.++..+ .+.+++||++++...+.++.
T Consensus 254 ----------g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 254 ----------GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred ----------CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHH
Confidence 12222222221111110111122222 22222 2466666644 35799999999999999999
Q ss_pred HHHH-cCC-ceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 505 LLKI-LGI-DVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 505 ~L~~-~g~-~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
.|+. .+. .+..+|+. ...|.+.+++||+|..+.
T Consensus 324 ~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~l 358 (441)
T COG4098 324 ALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITL 358 (441)
T ss_pred HHHhhCCccceeeeecc--CccHHHHHHHHHcCceEE
Confidence 9944 443 55788886 568999999999998654
No 113
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=4.2e-14 Score=154.20 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=103.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. .|+++|.-+.-. ++.|+ |+...||+|||++..+|++...+. |..|-|++|
T Consensus 77 ~g~-~~~dvQlig~l~-l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------------------G~~v~vvT~ 129 (796)
T PRK12906 77 LGL-RPFDVQIIGGIV-LHEGN--IAEMKTGEGKTLTATLPVYLNALT-----------------------GKGVHVVTV 129 (796)
T ss_pred hCC-CCchhHHHHHHH-HhcCC--cccccCCCCCcHHHHHHHHHHHHc-----------------------CCCeEEEec
Confidence 455 899999887644 45665 899999999999999998876543 457999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViD 348 (547)
|--||.|=++.+..+...+|+++.++.++.......... .+||+++|..-| .+.|... .........+.+.|||
T Consensus 130 neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvD 207 (796)
T PRK12906 130 NEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVD 207 (796)
T ss_pred cHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeec
Confidence 999999999999999999999999999988776554433 579999999877 3333221 0111224667899999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|||.+|
T Consensus 208 EvDSiL 213 (796)
T PRK12906 208 EVDSIL 213 (796)
T ss_pred cchhee
Confidence 999975
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=9e-14 Score=156.23 Aligned_cols=89 Identities=22% Similarity=0.371 Sum_probs=71.9
Q ss_pred HHcCCCCCcHHHHHH---HHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEE
Q 009003 191 YRLQFKEPTPIQKAC---IPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRA 267 (547)
Q Consensus 191 ~~~~~~~~~~iQ~~~---i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (547)
.-.|| .+++-|.+. +...+.++..++++|+||+|||++|++|++... .+.++
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------------------~~~~v 294 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------------------DQRQI 294 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------------------CCCcE
Confidence 33456 689999884 444556788999999999999999999988753 13589
Q ss_pred EEEccCHHHHHHH-HHHHHHhhcCCCcEEEEEEcCCCH
Q 009003 268 LIITPTRELALQV-TDHLKGVAKGINVRVVPIVGGMST 304 (547)
Q Consensus 268 lil~Ptr~La~qv-~~~l~~~~~~~~~~v~~~~g~~~~ 304 (547)
||++||++|+.|+ ...+..+.+.+++++.++.|+.++
T Consensus 295 vI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~y 332 (820)
T PRK07246 295 IVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQNY 332 (820)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCccc
Confidence 9999999999999 477888888788888888887653
No 115
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=2.2e-14 Score=133.26 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHHh------cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEE
Q 009003 197 EPTPIQKACIPAAAH------QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~------~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 270 (547)
.|+++|.+++..++. .++.+++.+|||||||.+++..+.... .++||+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~--------------------------~~~l~~ 56 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA--------------------------RKVLIV 56 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------------------------CEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------------------------cceeEe
Confidence 578999999988873 268999999999999988775554443 179999
Q ss_pred ccCHHHHHHHHHHHHHhhcCCCcEEEE----------EE-cCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC-----
Q 009003 271 TPTRELALQVTDHLKGVAKGINVRVVP----------IV-GGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK----- 334 (547)
Q Consensus 271 ~Ptr~La~qv~~~l~~~~~~~~~~v~~----------~~-g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~----- 334 (547)
+|+..|+.|+...+..+.......... .. ................+|+++|...|...+.....
T Consensus 57 ~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 136 (184)
T PF04851_consen 57 APNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESA 136 (184)
T ss_dssp ESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--------
T ss_pred cCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccch
Confidence 999999999999996664322111000 00 11111122233345788999999999877643211
Q ss_pred ---CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 335 ---HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 335 ---~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
.........+||+||||++..... ...++. . ....+|+||||+.
T Consensus 137 ~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-~-------------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 137 RRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-F-------------------------KAAFILGLTATPF 183 (184)
T ss_dssp -GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-S-------------------------SCCEEEEEESS-S
T ss_pred hhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-C-------------------------CCCeEEEEEeCcc
Confidence 112345678999999999864332 333333 2 4567999999975
No 116
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=3e-14 Score=147.44 Aligned_cols=238 Identities=19% Similarity=0.238 Sum_probs=152.7
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH-----
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK----- 285 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~----- 285 (547)
..++-|||.+.|||||| .++| ++|+..+.. ....+-+..|.|..|.-|+..+.
T Consensus 369 r~n~vvvivgETGSGKT--TQl~--QyL~edGY~------------------~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKT--TQLA--QYLYEDGYA------------------DNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hhCcEEEEEecCCCCch--hhhH--HHHHhcccc------------------cCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 46788899999999999 5566 777665321 12356677788876666665554
Q ss_pred HhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHH
Q 009003 286 GVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365 (547)
Q Consensus 286 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i 365 (547)
.++..+|+.| +++......+-|-++|.|.|++..-.+ ..|..+++||+||||.-. -+.+.+.-|
T Consensus 427 ~lG~~VGYsI----------RFEdvT~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERs--lNtDilfGl 490 (1042)
T KOG0924|consen 427 TLGDTVGYSI----------RFEDVTSEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERS--LNTDILFGL 490 (1042)
T ss_pred ccccccceEE----------EeeecCCCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcc--cchHHHHHH
Confidence 2344556555 333444456789999999998765332 558899999999999863 234444444
Q ss_pred HHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCc
Q 009003 366 IDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRAN 445 (547)
Q Consensus 366 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 445 (547)
++..-.. +...++|++|||+. .+.++..++ +
T Consensus 491 lk~~lar---------------------RrdlKliVtSATm~-------------------------a~kf~nfFg---n 521 (1042)
T KOG0924|consen 491 LKKVLAR---------------------RRDLKLIVTSATMD-------------------------AQKFSNFFG---N 521 (1042)
T ss_pred HHHHHHh---------------------hccceEEEeecccc-------------------------HHHHHHHhC---C
Confidence 4433211 14678999999987 566666554 3
Q ss_pred eeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHH----HHc------CC
Q 009003 446 VAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVH---GQGRTIVFCTSIAALRHISSLL----KIL------GI 511 (547)
Q Consensus 446 ~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~---~~~k~LVF~~s~~~a~~L~~~L----~~~------g~ 511 (547)
...+.++...+++. -.|...+. .+..+++...+..| +.|-+|||.++++.++-.+..+ .+. +.
T Consensus 522 ~p~f~IpGRTyPV~---~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L 598 (1042)
T KOG0924|consen 522 CPQFTIPGRTYPVE---IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDL 598 (1042)
T ss_pred CceeeecCCccceE---EEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCce
Confidence 33444444433332 23333332 33444444444433 5689999999988776655544 332 57
Q ss_pred ceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 512 DVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 512 ~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.|..+++.|++.-..+++..-..+.+|
T Consensus 599 ~vlpiYSQLp~dlQ~kiFq~a~~~vRK 625 (1042)
T KOG0924|consen 599 AVLPIYSQLPADLQAKIFQKAEGGVRK 625 (1042)
T ss_pred EEEeehhhCchhhhhhhcccCCCCcee
Confidence 899999999999998887755555554
No 117
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.55 E-value=2e-13 Score=149.79 Aligned_cols=275 Identities=17% Similarity=0.197 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHH
Q 009003 200 PIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQ 279 (547)
Q Consensus 200 ~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q 279 (547)
..+.+.+..+ .+.+.++|+|.||+||| .++| |+++..... .....++++..|.|--|.-
T Consensus 176 ~~r~~Il~~i-~~~qVvvIsGeTGcGKT--TQvp--QfiLd~~~~----------------~~~~~~IicTQPRRIsAIs 234 (924)
T KOG0920|consen 176 KMRDTILDAI-EENQVVVISGETGCGKT--TQVP--QFILDEAIE----------------SGAACNIICTQPRRISAIS 234 (924)
T ss_pred HHHHHHHHHH-HhCceEEEeCCCCCCch--hhhh--HHHHHHHHh----------------cCCCCeEEecCCchHHHHH
Confidence 3445555555 57889999999999999 4555 555443221 1145678999999866665
Q ss_pred HHHHHH-H----hhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 280 VTDHLK-G----VAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 280 v~~~l~-~----~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
+++.+. . ++..+|+++.+ .......+.+++||-|.|++.|..+ ..+..+.+||+||+|.-.
T Consensus 235 vAeRVa~ER~~~~g~~VGYqvrl----------~~~~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~ 300 (924)
T KOG0920|consen 235 VAERVAKERGESLGEEVGYQVRL----------ESKRSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERS 300 (924)
T ss_pred HHHHHHHHhccccCCeeeEEEee----------ecccCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEcc
Confidence 555553 2 22334555532 1222234789999999999999763 668999999999999864
Q ss_pred h-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhccccc---ccccCCc
Q 009003 355 E-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKS---KQSVNGL 430 (547)
Q Consensus 355 ~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~---~~~~~~~ 430 (547)
- ..|.-.+...+-..+ ...++|+||||+. ...|...+.....-. .......
T Consensus 301 i~~DflLi~lk~lL~~~------------------------p~LkvILMSAT~d-ae~fs~YF~~~pvi~i~grtfpV~~ 355 (924)
T KOG0920|consen 301 INTDFLLILLKDLLPRN------------------------PDLKVILMSATLD-AELFSDYFGGCPVITIPGRTFPVKE 355 (924)
T ss_pred CCcccHHHHHHHHhhhC------------------------CCceEEEeeeecc-hHHHHHHhCCCceEeecCCCcchHH
Confidence 2 222222222221111 5789999999987 333333333111000 0000011
Q ss_pred chHHHHHHHhcccC--ceeEEeccccccccccceEEEEEccccchHHHHH----HHHHhcCCCcEEEEeCChHHHHHHHH
Q 009003 431 NSIETLSERAGMRA--NVAIVDLTNMCVLANKLEESFIECKEEDKDAYLY----YILSVHGQGRTIVFCTSIAALRHISS 504 (547)
Q Consensus 431 ~~i~~l~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~----~ll~~~~~~k~LVF~~s~~~a~~L~~ 504 (547)
-.++++.....+.. ..... ..........+ ......+.....+. ++......|.+|||.++..++..+++
T Consensus 356 ~fLEDil~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~ 431 (924)
T KOG0920|consen 356 YFLEDILSKTGYVSEDDSARS---GPERSQLRLAR-LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKE 431 (924)
T ss_pred HHHHHHHHHhccccccccccc---ccccCcccccc-chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHH
Confidence 12333332221110 00000 00000000000 00001112223333 33334457899999999999999999
Q ss_pred HHHHc-------CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 505 LLKIL-------GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 505 ~L~~~-------g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.|... .+-+..+|+.|+..+...++..--.|.+|
T Consensus 432 ~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 432 LLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred HhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 99652 25688999999999999988766555554
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.52 E-value=4.1e-13 Score=148.37 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=98.2
Q ss_pred CCcHHHHHHHHHHHhc---------CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEE
Q 009003 197 EPTPIQKACIPAAAHQ---------GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRA 267 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~---------~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (547)
-|.++|..|+..++.. .+..+++.+||||||++.+..+. .++.. ...+++
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~--------------------~~~~~v 296 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL--------------------LKNPKV 296 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh--------------------cCCCeE
Confidence 3778899998776432 35789999999999987554433 33211 235789
Q ss_pred EEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcCCCCcccCCCc-cEE
Q 009003 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGGEKHLVELHTL-SFF 345 (547)
Q Consensus 268 lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l-~~l 345 (547)
|||+|+.+|..|+.+.|..+..... .+..+.......+. ....|+|+|...|...+..... .+....- -+|
T Consensus 297 l~lvdR~~L~~Q~~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~-~~~~~~~~~lv 369 (667)
T TIGR00348 297 FFVVDRRELDYQLMKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEE-KFPVDRKEVVV 369 (667)
T ss_pred EEEECcHHHHHHHHHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh-ccCCCCCCEEE
Confidence 9999999999999999998853211 11122222333333 3468999999999764432111 1111111 289
Q ss_pred EEeccchhhhcCChHHHHHHH-HhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 346 VLDEADRMIENGHFRELQSII-DMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 346 ViDEah~ll~~~~~~~l~~i~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
|+||||+.... .+..++ ..+| ....++||||+-.
T Consensus 370 IvDEaHrs~~~----~~~~~l~~~~p-------------------------~a~~lGfTaTP~~ 404 (667)
T TIGR00348 370 IFDEAHRSQYG----ELAKNLKKALK-------------------------NASFFGFTGTPIF 404 (667)
T ss_pred EEEcCccccch----HHHHHHHhhCC-------------------------CCcEEEEeCCCcc
Confidence 99999986422 222333 4554 3578999999863
No 119
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.45 E-value=1.2e-13 Score=138.51 Aligned_cols=282 Identities=18% Similarity=0.159 Sum_probs=172.3
Q ss_pred CCCcHHHHHHHHHHHhcCC--cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 196 KEPTPIQKACIPAAAHQGK--DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~--dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
+.++|+|..++..|+-+|+ ..||+.|.|+|||++-+-++.. + .-++||||.+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i-------------------------kK~clvLcts 354 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I-------------------------KKSCLVLCTS 354 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-------------------------cccEEEEecC
Confidence 4789999999999986664 7899999999999875444321 1 2369999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC-----CCcccCCCccEEEEe
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLD 348 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~-----~~~~~l~~l~~lViD 348 (547)
--.+.||...+..++.--+-+++.++.... .....++.|+|+|...+..--.+.+ ...+.-..+.++|+|
T Consensus 355 ~VSVeQWkqQfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllD 429 (776)
T KOG1123|consen 355 AVSVEQWKQQFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLD 429 (776)
T ss_pred ccCHHHHHHHHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEee
Confidence 999999999999887666677777776533 2345678999999887742111000 001224567899999
Q ss_pred ccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccC
Q 009003 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVN 428 (547)
Q Consensus 349 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~ 428 (547)
|+|.+... ++..+..|+..- --+++|||+-..++....|...+.. +....
T Consensus 430 EVHvvPA~-MFRRVlsiv~aH----------------------------cKLGLTATLvREDdKI~DLNFLIGP-KlYEA 479 (776)
T KOG1123|consen 430 EVHVVPAK-MFRRVLSIVQAH----------------------------CKLGLTATLVREDDKITDLNFLIGP-KLYEA 479 (776)
T ss_pred hhccchHH-HHHHHHHHHHHH----------------------------hhccceeEEeeccccccccceeecc-hhhhc
Confidence 99998744 555566665432 2379999998777665555432211 11111
Q ss_pred CcchHHHHHHHhcccCceeEEecc----cc---cccc-ccceEEEEEccccchHHHHHHHHHhc--CCCcEEEEeCChHH
Q 009003 429 GLNSIETLSERAGMRANVAIVDLT----NM---CVLA-NKLEESFIECKEEDKDAYLYYILSVH--GQGRTIVFCTSIAA 498 (547)
Q Consensus 429 ~~~~i~~l~~~~~~~~~~~~i~~~----~~---~~~~-~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~ 498 (547)
+..++... +.-.++....+. .. .+.. ..-......+-...|+.+...+++.| .+.++|||..++-.
T Consensus 480 ---nWmdL~~k-GhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA 555 (776)
T KOG1123|consen 480 ---NWMDLQKK-GHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFA 555 (776)
T ss_pred ---cHHHHHhC-CceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHH
Confidence 11122111 111111111110 00 0000 01111222222344555544555433 57799999998887
Q ss_pred HHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh-----cCCCCCCCCC
Q 009003 499 LRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR-----KRPKGDRGKD 547 (547)
Q Consensus 499 a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~-----k~~~g~~~~~ 547 (547)
....+-.|. --+++|..+|.+|.+|+..|+..-. =...||..+|
T Consensus 556 Lk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiD 604 (776)
T KOG1123|consen 556 LKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSID 604 (776)
T ss_pred HHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeeccCcccc
Confidence 777776663 3467899999999999999987432 1345665544
No 120
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.44 E-value=8.8e-12 Score=131.29 Aligned_cols=292 Identities=17% Similarity=0.193 Sum_probs=177.3
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAA---HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l---~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.++++|.+.+.+++ ++|-+.|+...+|-|||+.. +.+|.++...+ +..| .-||+||.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~------------------~~~G-PfLVi~P~ 226 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK------------------GIPG-PFLVIAPK 226 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc------------------CCCC-CeEEEeeH
Confidence 78999999988764 36788999999999999763 44454443321 2223 36889998
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHH--HHH-hcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEecc
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ--ERL-LKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~--~~~-~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEa 350 (547)
..| ..|.+++.+++. ++++++++|....... ... .....+|+|+|.+..+.. ...+.--+++|||||||
T Consensus 227 StL-~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d-----k~~lk~~~W~ylvIDEa 298 (971)
T KOG0385|consen 227 STL-DNWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD-----KSFLKKFNWRYLVIDEA 298 (971)
T ss_pred hhH-HHHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh-----HHHHhcCCceEEEechh
Confidence 766 569999999977 5677888887643221 111 224789999999988643 12233457799999999
Q ss_pred chhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC--------------------CCh
Q 009003 351 DRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA--------------------LSA 410 (547)
Q Consensus 351 h~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--------------------~~~ 410 (547)
|+| .+..+.+..+++.+... -.+++|.|+- ...
T Consensus 299 HRi--KN~~s~L~~~lr~f~~~-------------------------nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e 351 (971)
T KOG0385|consen 299 HRI--KNEKSKLSKILREFKTD-------------------------NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAE 351 (971)
T ss_pred hhh--cchhhHHHHHHHHhccc-------------------------ceeEeeCCcccccHHHHHHHHHhhchhhccCHH
Confidence 999 55566667777777532 2344444411 111
Q ss_pred hHHHHhhh-------------------------------------------------------cccccccccCCcc----
Q 009003 411 DFRKKLKH-------------------------------------------------------GSLKSKQSVNGLN---- 431 (547)
Q Consensus 411 ~~~~~l~~-------------------------------------------------------~~~~~~~~~~~~~---- 431 (547)
+|..|+.. ...+....+.+..
T Consensus 352 ~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k 431 (971)
T KOG0385|consen 352 DFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEK 431 (971)
T ss_pred HHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchh
Confidence 22222211 1111000011000
Q ss_pred -hHHHHHHHh-cccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHH
Q 009003 432 -SIETLSERA-GMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLK 507 (547)
Q Consensus 432 -~i~~l~~~~-~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~ 507 (547)
.+..+...+ .-...+.+++-..+..+.....|.+ ....|..+|-.+|... .+.++|||..-.....-|-+++-
T Consensus 432 ~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv---~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~ 508 (971)
T KOG0385|consen 432 TKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV---TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM 508 (971)
T ss_pred hHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHH---hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH
Confidence 011111100 0112222222222212222222221 2345777777777643 57899999999999999999888
Q ss_pred HcCCceEEecCCcCHHHHHHHHHHHHh-------hhhcCCCCCCCC
Q 009003 508 ILGIDVWTLHAQMQQRARLKLFSQMIT-------WIRKRPKGDRGK 546 (547)
Q Consensus 508 ~~g~~v~~lhg~m~~~eR~~il~~F~~-------~~~k~~~g~~~~ 546 (547)
-.++..+-+.|.++..+|..+++.|-. |...-++|+-|+
T Consensus 509 ~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 509 LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 889999999999999999999999955 223455666554
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.42 E-value=6e-12 Score=134.59 Aligned_cols=141 Identities=21% Similarity=0.202 Sum_probs=97.8
Q ss_pred CCCcHHHHHHHHHHHh---cC-CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 196 KEPTPIQKACIPAAAH---QG-KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~---~~-~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
..|+.+|..||..+.+ +| +.+|++..||+|||.. ++.++.+|.+.+. --|+|+|+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~--------------------~KRVLFLa 222 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGW--------------------VKRVLFLA 222 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcch--------------------hheeeEEe
Confidence 3688999999976543 33 4589999999999976 3556666665543 23899999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC--CCCcccCCCccEEEEec
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG--EKHLVELHTLSFFVLDE 349 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~--~~~~~~l~~l~~lViDE 349 (547)
-+++|+.|.+..+..+...-.. +..+.+. .....+.|.|+|...+...+... ....+....+++|||||
T Consensus 223 DR~~Lv~QA~~af~~~~P~~~~-~n~i~~~--------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDE 293 (875)
T COG4096 223 DRNALVDQAYGAFEDFLPFGTK-MNKIEDK--------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDE 293 (875)
T ss_pred chHHHHHHHHHHHHHhCCCccc-eeeeecc--------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEech
Confidence 9999999999999888553221 1111111 11124789999999998887653 23345566699999999
Q ss_pred cchhhhcCChHHHHHHHHhCC
Q 009003 350 ADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 350 ah~ll~~~~~~~l~~i~~~l~ 370 (547)
||+= .+.....|+.++.
T Consensus 294 aHRg----i~~~~~~I~dYFd 310 (875)
T COG4096 294 AHRG----IYSEWSSILDYFD 310 (875)
T ss_pred hhhh----HHhhhHHHHHHHH
Confidence 9964 3444456666654
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.37 E-value=1.8e-11 Score=124.64 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=58.4
Q ss_pred chHHHHHHHHH--hcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCC
Q 009003 472 DKDAYLYYILS--VHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKG 542 (547)
Q Consensus 472 ~k~~~l~~ll~--~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g 542 (547)
...+-|+.-++ ...+.++||-+-|+++|+.|.++|...|++|.++|+++..-+|.+++..+|.|......|
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVG 502 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEe
Confidence 34444444443 234689999999999999999999999999999999999999999999999987654443
No 123
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.36 E-value=1.5e-11 Score=123.40 Aligned_cols=252 Identities=19% Similarity=0.161 Sum_probs=154.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
+..|...+.+++..+.++.. -.-|---|+..+..++.+++.++++|.|||||| .++| +++......
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKt--tQiP--q~~~~~~~~--------- 89 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKT--TQIP--QFVLEYELS--------- 89 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCceEEEEecCCCCcc--ccCc--HHHHHHHHh---------
Confidence 56678888888877777654 234445567777777778899999999999999 4555 332221110
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH-----HhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLK-----GVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL 328 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~-----~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~ 328 (547)
....+....|.|--|.++..... .++..+|+.| .++.-..+++-+-+||.+.|++.
T Consensus 90 ---------~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysI----------rfEdC~~~~T~Lky~tDgmLlrE 150 (699)
T KOG0925|consen 90 ---------HLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSI----------RFEDCTSPNTLLKYCTDGMLLRE 150 (699)
T ss_pred ---------hccceeecCchHHHHHHHHHHHHHHhccccchhccccc----------cccccCChhHHHHHhcchHHHHH
Confidence 01246777788876666655543 3445555555 33333333445668999999887
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
..++ ..|..+.+||+||||.-.- -.+.+.-+++.+-. .+...++|+||||+-
T Consensus 151 ams~----p~l~~y~viiLDeahERtl--ATDiLmGllk~v~~---------------------~rpdLk~vvmSatl~- 202 (699)
T KOG0925|consen 151 AMSD----PLLGRYGVIILDEAHERTL--ATDILMGLLKEVVR---------------------NRPDLKLVVMSATLD- 202 (699)
T ss_pred HhhC----cccccccEEEechhhhhhH--HHHHHHHHHHHHHh---------------------hCCCceEEEeecccc-
Confidence 7665 5689999999999997521 12222333322221 114679999999986
Q ss_pred ChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchH-HH---HHHHHHhc
Q 009003 409 SADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKD-AY---LYYILSVH 484 (547)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-~~---l~~ll~~~ 484 (547)
...+-.. ..++.++.+++. .+ ++.+|......+.. ++ +..|+...
T Consensus 203 ------------------------a~Kfq~y---f~n~Pll~vpg~-~P---vEi~Yt~e~erDylEaairtV~qih~~e 251 (699)
T KOG0925|consen 203 ------------------------AEKFQRY---FGNAPLLAVPGT-HP---VEIFYTPEPERDYLEAAIRTVLQIHMCE 251 (699)
T ss_pred ------------------------hHHHHHH---hCCCCeeecCCC-Cc---eEEEecCCCChhHHHHHHHHHHHHHhcc
Confidence 2222222 334455555541 11 22334333333222 23 33444444
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHc---------CCceEEec
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKIL---------GIDVWTLH 517 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~---------g~~v~~lh 517 (547)
.+|-+|||.++.++++..++.+... ...|..+|
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy 293 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY 293 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC
Confidence 6899999999999999998888642 35788888
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=2.7e-10 Score=122.29 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=103.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. .|+++|.-..-.++ +|+ |+...||+|||++..+|++...+. |..|-|++|
T Consensus 75 lg~-r~ydvQlig~l~Ll-~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----------------------G~~VhvvT~ 127 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL-AGD--VIEMATGEGKTLAGAIAAAGYALQ-----------------------GRRVHVITV 127 (764)
T ss_pred cCC-CcchHHHHHHHHHh-CCC--cccccCCCCHHHHHHHHHHHHHHc-----------------------CCCeEEEcC
Confidence 455 89999999886665 553 679999999999999998876533 457999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViD 348 (547)
+--||.|-++.+..+...+|+++.++.++.+........ .+||+++|..-| .++|... .........+.+.|||
T Consensus 128 NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVD 205 (764)
T PRK12326 128 NDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIID 205 (764)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeec
Confidence 999999999999999999999999999988876544443 589999999876 2333211 1111235668899999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|||.+|
T Consensus 206 EvDSiL 211 (764)
T PRK12326 206 EADSVL 211 (764)
T ss_pred chhhhe
Confidence 999975
No 125
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.33 E-value=2e-11 Score=131.86 Aligned_cols=74 Identities=27% Similarity=0.244 Sum_probs=58.8
Q ss_pred HHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhh
Q 009003 209 AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA 288 (547)
Q Consensus 209 ~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~ 288 (547)
.+.+++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------------------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------------------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999876421 24689999999999999999998887
Q ss_pred -cC--CCcEEEEEEcCCC
Q 009003 289 -KG--INVRVVPIVGGMS 303 (547)
Q Consensus 289 -~~--~~~~v~~~~g~~~ 303 (547)
+. ..++++++.|+.+
T Consensus 71 ~~~l~~~i~~~~lkGr~n 88 (636)
T TIGR03117 71 AEGLAGPVQAGFFPGSQE 88 (636)
T ss_pred HhhcCCCeeEEEEECCcc
Confidence 43 3566666665543
No 126
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=1.6e-10 Score=122.42 Aligned_cols=285 Identities=18% Similarity=0.179 Sum_probs=167.6
Q ss_pred CCCcHHHHHHHHHHHh---cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 196 KEPTPIQKACIPAAAH---QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~---~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
..+.++|+..+.++.. ++.-.|+...+|-|||... +..|..|+.. ......||||||
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S-------------------~k~~~paLIVCP 263 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHS-------------------GKLTKPALIVCP 263 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhc-------------------ccccCceEEEcc
Confidence 3677899999988743 4566799999999999642 2222222211 011246999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHH--------HHHH-----hcCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEK--------QERL-----LKARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~--------~~~~-----~~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
. .++.||.++|..++. .++|..+++...... .... ......|+|+|...+.- . ...+.-
T Consensus 264 ~-Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~-~----~d~l~~ 335 (923)
T KOG0387|consen 264 A-TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI-Q----GDDLLG 335 (923)
T ss_pred H-HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc-c----Cccccc
Confidence 8 788999999998855 567777876655211 1111 11245799999888642 1 112334
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh--hHH---H
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA--DFR---K 414 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~--~~~---~ 414 (547)
..+.++|+||.|+| .+--..+...+..++ -.+.|++|.|+-... ++. .
T Consensus 336 ~~W~y~ILDEGH~I--rNpns~islackki~-------------------------T~~RiILSGTPiQNnL~ELwsLfD 388 (923)
T KOG0387|consen 336 ILWDYVILDEGHRI--RNPNSKISLACKKIR-------------------------TVHRIILSGTPIQNNLTELWSLFD 388 (923)
T ss_pred ccccEEEecCcccc--cCCccHHHHHHHhcc-------------------------ccceEEeeCccccchHHHHHHHhh
Confidence 56799999999999 444556666666664 456788898854211 111 1
Q ss_pred Hhhhcccc----------cccccCCcch---------------HHHHHHHhccc---------------CceeEEeccc-
Q 009003 415 KLKHGSLK----------SKQSVNGLNS---------------IETLSERAGMR---------------ANVAIVDLTN- 453 (547)
Q Consensus 415 ~l~~~~~~----------~~~~~~~~~~---------------i~~l~~~~~~~---------------~~~~~i~~~~- 453 (547)
++.-+.+. .++...+..+ +..+...+.++ ..+....++.
T Consensus 389 Fv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 389 FVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred hccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHH
Confidence 11101000 0111110000 11111111111 0011111110
Q ss_pred ---------------------------------cccccccceEE--E--------EEccccchHHHHHHHHHhc--CCCc
Q 009003 454 ---------------------------------MCVLANKLEES--F--------IECKEEDKDAYLYYILSVH--GQGR 488 (547)
Q Consensus 454 ---------------------------------~~~~~~~i~~~--~--------~~~~~~~k~~~l~~ll~~~--~~~k 488 (547)
.+..+..+... . -......|..++..++... .+.+
T Consensus 469 QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~r 548 (923)
T KOG0387|consen 469 QRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDR 548 (923)
T ss_pred HHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCE
Confidence 00000000000 0 0111234667777777643 4669
Q ss_pred EEEEeCChHHHHHHHHHHH-HcCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 489 TIVFCTSIAALRHISSLLK-ILGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~-~~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
+|+|..++.+...|-..|. ..||.+.-+.|..+...|..++++|-+.
T Consensus 549 vllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 549 VLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred EEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 9999999999999999999 5899999999999999999999999864
No 127
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.26 E-value=1.7e-11 Score=134.88 Aligned_cols=156 Identities=24% Similarity=0.354 Sum_probs=119.0
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
...++|.++++.+.+.+++|++++|+|||||.+.-+.++. +.+-.+++++.|..+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------------------~~~~~~~vyi~p~~~i 1198 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------------------PDTIGRAVYIAPLEEI 1198 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------------------CccceEEEEecchHHH
Confidence 4489999999999888899999999999999998887664 2345789999999999
Q ss_pred HHHHHHHHH-HhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 277 ALQVTDHLK-GVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 277 a~qv~~~l~-~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
+..+++.+. ++....|..++.+.|...... .+....+|+|+||+++- +++ ..+.+++.|.||+|.+..
T Consensus 1199 ~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d-~lq-------~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1199 ADEQYRDWEKKFSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWD-LLQ-------SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred HHHHHHHHHHhhccccCceEEecCCccccch---HHhhhcceEEechhHHH-HHh-------hhhhcceEeeehhhhhcc
Confidence 998888876 556667899998888876543 34456789999999963 332 357789999999998862
Q ss_pred cCChHH------HHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 356 NGHFRE------LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 356 ~~~~~~------l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
.+... +..|-..+- +..+++.+|..+.+..++
T Consensus 1268 -~~g~v~evi~S~r~ia~q~~------------------------k~ir~v~ls~~lana~d~ 1305 (1674)
T KOG0951|consen 1268 -VYGAVYEVICSMRYIASQLE------------------------KKIRVVALSSSLANARDL 1305 (1674)
T ss_pred -cCCceEEEEeeHHHHHHHHH------------------------hheeEEEeehhhccchhh
Confidence 22111 333433333 778899999998866654
No 128
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.26 E-value=1.6e-11 Score=132.21 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=120.9
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|..||.+.+... ..+..++|+|||.+|||++--. +++.+++..+ ..-+|+++||.+|
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY-~iEKVLResD--------------------~~VVIyvaPtKaL 568 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFY-AIEKVLRESD--------------------SDVVIYVAPTKAL 568 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHH-HHHHHHhhcC--------------------CCEEEEecchHHH
Confidence 6889999999776 5789999999999999965222 3344443321 2358999999999
Q ss_pred HHHHHHHHHHhhcCCC-cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 277 ALQVTDHLKGVAKGIN-VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
++|+...+........ .+.+.+.|....+-+. -.-+|+|+|+-|+-+-.+|-...........++++|+||+|.+..
T Consensus 569 VnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsi--np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~ 646 (1330)
T KOG0949|consen 569 VNQVSANVYARFDTKTFLRGVSLLGDLTQEYSI--NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN 646 (1330)
T ss_pred hhhhhHHHHHhhccCccccchhhHhhhhHHhcC--CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc
Confidence 9999888876543222 2223333333222111 112699999999999888865333445688999999999999975
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhh
Q 009003 356 NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 417 (547)
Q Consensus 356 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 417 (547)
....--++.++-.+ ++.+|++|||+.+...+.+|+.
T Consensus 647 ~ed~l~~Eqll~li--------------------------~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 647 EEDGLLWEQLLLLI--------------------------PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred cccchHHHHHHHhc--------------------------CCCeeEEecccCCHHHHHHHHH
Confidence 54444445555444 3789999999999999999987
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=3e-10 Score=124.81 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=102.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. +|+++|.-.--. |+ +--|+...||+|||+++.+|++...+ .|..|-|++|
T Consensus 79 lGm-~~ydVQliGg~~-Lh--~G~iaEM~TGEGKTLvA~l~a~l~al-----------------------~G~~VhvvT~ 131 (913)
T PRK13103 79 MGM-RHFDVQLIGGMT-LH--EGKIAEMRTGEGKTLVGTLAVYLNAL-----------------------SGKGVHVVTV 131 (913)
T ss_pred hCC-CcchhHHHhhhH-hc--cCccccccCCCCChHHHHHHHHHHHH-----------------------cCCCEEEEeC
Confidence 454 788898866533 33 34578999999999999999876553 2457999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC---CCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~---~~~~~l~~l~~lViD 348 (547)
|--||.|-++.+..+...+|+.+.++.++........... +||+++|..-| .+.|...- ........+.++|||
T Consensus 132 ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVD 209 (913)
T PRK13103 132 NDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVID 209 (913)
T ss_pred CHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEec
Confidence 9999999999999999999999999999887766554444 89999999886 33333210 011124788999999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|+|.+|
T Consensus 210 EvDsiL 215 (913)
T PRK13103 210 EVDSIL 215 (913)
T ss_pred hhhhee
Confidence 999975
No 130
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.20 E-value=5.6e-11 Score=102.74 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=68.7
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI 291 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~ 291 (547)
.|+-.++-..+|+|||--.+.-++...+.. +.|+|||.|||.++..+++.|+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------------------~~rvLvL~PTRvva~em~~aL~~~---- 56 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------------------RLRVLVLAPTRVVAEEMYEALKGL---- 56 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------------------T--EEEEESSHHHHHHHHHHTTTS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------------------cCeEEEecccHHHHHHHHHHHhcC----
Confidence 355668889999999977555555444332 468999999999999999988754
Q ss_pred CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 292 ~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
++++..-..+ .....+.-|-|+|-..+...+.+. ..+.+++++|+||||..
T Consensus 57 ~~~~~t~~~~-------~~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 57 PVRFHTNARM-------RTHFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFT 107 (148)
T ss_dssp SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--
T ss_pred CcccCceeee-------ccccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccC
Confidence 4444211110 012245668899999998887663 45789999999999975
No 131
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.17 E-value=2.8e-09 Score=115.77 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=95.1
Q ss_pred CCcHHHHHHHHHHHhc--C-------CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEE
Q 009003 197 EPTPIQKACIPAAAHQ--G-------KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRA 267 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~--~-------~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (547)
.+.|+|++.+.-+..+ | .-.|+.-.+|+|||+... ++++.+++.. .+..+.--++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~I-sflwtlLrq~---------------P~~~~~~~k~ 301 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCI-SFIWTLLRQF---------------PQAKPLINKP 301 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHH-HHHHHHHHhC---------------cCcccccccc
Confidence 6789999998765321 1 235667789999998743 3444443321 1111122578
Q ss_pred EEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCH--HHHHHHh-----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 268 LIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMST--EKQERLL-----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 268 lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~--~~~~~~~-----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
|||+|. .|+..|.++|.+......+....++|..+. ......+ .-..-|++-+.+.+.+.+.. +.+.
T Consensus 302 lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~ 375 (776)
T KOG0390|consen 302 LVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLI 375 (776)
T ss_pred EEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcC
Confidence 999998 899999999998866556666677777664 1111111 11246888888888766643 5577
Q ss_pred CccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 341 TLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 341 ~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
.+.+||+||.|++ .+....+...+..+
T Consensus 376 ~~glLVcDEGHrl--kN~~s~~~kaL~~l 402 (776)
T KOG0390|consen 376 RPGLLVCDEGHRL--KNSDSLTLKALSSL 402 (776)
T ss_pred CCCeEEECCCCCc--cchhhHHHHHHHhc
Confidence 8899999999997 33333334444443
No 132
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.16 E-value=8e-11 Score=118.32 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=94.7
Q ss_pred HHHHHHHHHHh------------cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEE
Q 009003 201 IQKACIPAAAH------------QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRAL 268 (547)
Q Consensus 201 iQ~~~i~~~l~------------~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (547)
+|..++..++. ..+.+|++..+|+|||+..+.- +..+.... .....-.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~-~~~l~~~~-----------------~~~~~~~~L 62 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIAL-ISYLKNEF-----------------PQRGEKKTL 62 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHH-HHHHHHCC-----------------TTSS-S-EE
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhh-hhhhhhcc-----------------cccccccee
Confidence 57777776643 3468899999999999775443 33332210 001112499
Q ss_pred EEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEe
Q 009003 269 IITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348 (547)
Q Consensus 269 il~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViD 348 (547)
||||. .+..||..++..++....+++..+.|...............+|+|+|...+...........+.--.+.+||||
T Consensus 63 Iv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvD 141 (299)
T PF00176_consen 63 IVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVD 141 (299)
T ss_dssp EEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEET
T ss_pred Eeecc-chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEe
Confidence 99999 88899999999998655667766666651222222233468999999999881110001111222348899999
Q ss_pred ccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 349 EADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 349 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
|+|.+ .+........+..+. ....+++|||+.
T Consensus 142 EaH~~--k~~~s~~~~~l~~l~-------------------------~~~~~lLSgTP~ 173 (299)
T PF00176_consen 142 EAHRL--KNKDSKRYKALRKLR-------------------------ARYRWLLSGTPI 173 (299)
T ss_dssp TGGGG--TTTTSHHHHHHHCCC-------------------------ECEEEEE-SS-S
T ss_pred ccccc--ccccccccccccccc-------------------------cceEEeeccccc
Confidence 99998 445555555555553 457899999965
No 133
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.13 E-value=2.7e-09 Score=117.14 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC
Q 009003 471 EDKDAYLYYILSV--HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP 540 (547)
Q Consensus 471 ~~k~~~l~~ll~~--~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~ 540 (547)
..+...|...++. ..+.++||||+|+..++.|+..|...|+.+..+||+|++.+|.+++..|+.|.....
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VL 496 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVL 496 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEE
Confidence 3455556555553 246799999999999999999999999999999999999999999999999876543
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.12 E-value=4.8e-09 Score=115.01 Aligned_cols=133 Identities=21% Similarity=0.250 Sum_probs=100.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|+ +|+++|.-..- ++ .+.-|+...||.|||+++.+|+.-..+ .|..|-||++
T Consensus 73 lG~-r~ydvQlig~l-~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-----------------------~G~~VhVvT~ 125 (870)
T CHL00122 73 LGL-RHFDVQLIGGL-VL--NDGKIAEMKTGEGKTLVATLPAYLNAL-----------------------TGKGVHIVTV 125 (870)
T ss_pred hCC-CCCchHhhhhH-hh--cCCccccccCCCCchHHHHHHHHHHHh-----------------------cCCceEEEeC
Confidence 566 68899987763 33 356789999999999999999854332 2456999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViD 348 (547)
+..||.+-++.+..+...+|+.+.++.++.+....... -.+||+.+|..-| .+.|... .........+.+.|||
T Consensus 126 NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVD 203 (870)
T CHL00122 126 NDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIID 203 (870)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeee
Confidence 99999999999999999999999999888887554443 3479999999765 2333211 0111235678899999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|||.+|
T Consensus 204 EvDSiL 209 (870)
T CHL00122 204 EVDSIL 209 (870)
T ss_pred cchhhe
Confidence 999975
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=4.2e-09 Score=115.24 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=101.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|. +|+++|.-.--.+ + +--|+...||-|||+++.+|+.-..+ +|..|-||++
T Consensus 82 lG~-r~ydVQliGgl~L-h--~G~IAEM~TGEGKTL~atlpaylnAL-----------------------~GkgVhVVTv 134 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL-H--EGQIAEMKTGEGKTLVATLPSYLNAL-----------------------TGKGVHVVTV 134 (939)
T ss_pred hCC-CcchhHHHhhhhh-c--CCceeeecCCCChhHHHHHHHHHHhh-----------------------cCCCeEEEeC
Confidence 455 7888987765333 3 44578999999999999999876543 2446999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-----HHHHhcCCCCcccCCCccEEEE
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-----WELMSGGEKHLVELHTLSFFVL 347 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-----~~~l~~~~~~~~~l~~l~~lVi 347 (547)
+--||.+=++.+..+...+|+.|.++.++....... ..-.+||+++|+..| .+.|... ........+.+.||
T Consensus 135 NdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~-~~~~vqR~~~faIV 211 (939)
T PRK12902 135 NDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATD-ISEVVQRPFNYCVI 211 (939)
T ss_pred CHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhccc-ccccccCccceEEE
Confidence 999999999999999999999999998887765443 334689999999988 4444321 11133677899999
Q ss_pred eccchhh
Q 009003 348 DEADRMI 354 (547)
Q Consensus 348 DEah~ll 354 (547)
||||.+|
T Consensus 212 DEvDSIL 218 (939)
T PRK12902 212 DEVDSIL 218 (939)
T ss_pred eccccee
Confidence 9999975
No 136
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.12 E-value=8.5e-10 Score=109.88 Aligned_cols=76 Identities=24% Similarity=0.276 Sum_probs=57.9
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEE
Q 009003 194 QFKEPTPIQKACIPAA---AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~~---l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 270 (547)
.| .|+|.|.+.+..+ +..|..+++.||||+|||++|++|++.++..... ...+.+++|+
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~~ 67 (289)
T smart00489 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIYL 67 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeEE
Confidence 44 4799999855443 3478999999999999999999999987653211 0023479999
Q ss_pred ccCHHHHHHHHHHHHHh
Q 009003 271 TPTRELALQVTDHLKGV 287 (547)
Q Consensus 271 ~Ptr~La~qv~~~l~~~ 287 (547)
++|..+..|....++++
T Consensus 68 t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 68 SRTVSEIEKRLEELRKL 84 (289)
T ss_pred eccHHHHHHHHHHHHhc
Confidence 99999988888777765
No 137
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.12 E-value=8.5e-10 Score=109.88 Aligned_cols=76 Identities=24% Similarity=0.276 Sum_probs=57.9
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEE
Q 009003 194 QFKEPTPIQKACIPAA---AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~~---l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 270 (547)
.| .|+|.|.+.+..+ +..|..+++.||||+|||++|++|++.++..... ...+.+++|+
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~~ 67 (289)
T smart00488 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIYL 67 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeEE
Confidence 44 4799999855443 3478999999999999999999999987653211 0023479999
Q ss_pred ccCHHHHHHHHHHHHHh
Q 009003 271 TPTRELALQVTDHLKGV 287 (547)
Q Consensus 271 ~Ptr~La~qv~~~l~~~ 287 (547)
++|..+..|....++++
T Consensus 68 t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 68 SRTVSEIEKRLEELRKL 84 (289)
T ss_pred eccHHHHHHHHHHHHhc
Confidence 99999988888777765
No 138
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.08 E-value=4.1e-09 Score=114.99 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=113.8
Q ss_pred CCCcHHHHHHHHHHHhc---CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 196 KEPTPIQKACIPAAAHQ---GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~---~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
..+++-|..++..+... -...++.+.||||||-+|+-.+-+.|.. |-.+|||+|
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----------------------GkqvLvLVP 253 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----------------------GKQVLVLVP 253 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----------------------CCEEEEEec
Confidence 36788999999888654 3678999999999999987766655532 347999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViD 348 (547)
-.+|-.|+.+.|+.. ++.++..++++.+.......+ .....|+|+|=..|. ..++++.+||||
T Consensus 254 EI~Ltpq~~~rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF----------~Pf~~LGLIIvD 320 (730)
T COG1198 254 EIALTPQLLARFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF----------LPFKNLGLIIVD 320 (730)
T ss_pred cccchHHHHHHHHHH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc----------CchhhccEEEEe
Confidence 999999999999876 357888899998876554433 367899999944432 448899999999
Q ss_pred ccchhh---hcC---ChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 349 EADRMI---ENG---HFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 349 Eah~ll---~~~---~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
|=|.-. +.+ +...+--.+.+. ...++|+-|||.+
T Consensus 321 EEHD~sYKq~~~prYhARdvA~~Ra~~-------------------------~~~pvvLgSATPS 360 (730)
T COG1198 321 EEHDSSYKQEDGPRYHARDVAVLRAKK-------------------------ENAPVVLGSATPS 360 (730)
T ss_pred ccccccccCCcCCCcCHHHHHHHHHHH-------------------------hCCCEEEecCCCC
Confidence 999642 111 244555555544 4578999999976
No 139
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.07 E-value=1e-11 Score=134.82 Aligned_cols=248 Identities=19% Similarity=0.206 Sum_probs=165.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
+....|+|.+.+-.+.+-..++++.+|||+|||++|-+.++..+. ..++.++++++|-.
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~---------------------~~p~~kvvyIap~k 983 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALS---------------------YYPGSKVVYIAPDK 983 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhc---------------------cCCCccEEEEcCCc
Confidence 335667888877666666678899999999999999998776552 34457999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 275 ELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 275 ~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
+|+..-.+.+.......|++++-+.|...+... -...++|+|+||++.-.+..+ |...-.+.++..+|+||.|++.
T Consensus 984 alvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rs-w~~r~~v~~v~~iv~de~hllg 1059 (1230)
T KOG0952|consen 984 ALVKERSDDWSKRDELPGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRS-WQTRKYVQSVSLIVLDEIHLLG 1059 (1230)
T ss_pred hhhcccccchhhhcccCCceeEeccCccCCChh---heecCceEEcccccccCcccc-ccchhhhccccceeeccccccc
Confidence 999988888877655558999998888776522 123578999999998766654 5566678999999999999876
Q ss_pred hcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHH
Q 009003 355 ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIE 434 (547)
Q Consensus 355 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~ 434 (547)
.++...++.|....+ ++......+.+.+.+|--+.+..++.+|+..... +... +
T Consensus 1060 -~~rgPVle~ivsr~n-----------------~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~---~--- 1113 (1230)
T KOG0952|consen 1060 -EDRGPVLEVIVSRMN-----------------YISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFR---P--- 1113 (1230)
T ss_pred -CCCcceEEEEeeccc-----------------cCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCC---c---
Confidence 555555555554444 2233334678888988888899999999975432 0000 0
Q ss_pred HHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHH
Q 009003 435 TLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVH-GQGRTIVFCTSIAALRHISSLL 506 (547)
Q Consensus 435 ~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~k~LVF~~s~~~a~~L~~~L 506 (547)
..++.+..+.+... . ..+++.......+ -....++.+ |..++|||+.++.....-+.-|
T Consensus 1114 ------svrpvp~~~~i~gf----p-~~~~cprm~smnk--pa~qaik~~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1114 ------SVRPVPLEVHIDGF----P-GQHYCPRMMSMNK--PAFQAIKTHSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred ------ccccCCceEeecCC----C-chhcchhhhhccc--HHHHHHhcCCCCCceEEEeecccccccchHhH
Confidence 01222222222111 1 1122222222222 234444544 5689999999987766555444
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.06 E-value=2.4e-09 Score=122.93 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=63.8
Q ss_pred CCCCCcHHHHHHHHH---HHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEE
Q 009003 194 QFKEPTPIQKACIPA---AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~---~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 270 (547)
|| .+++-|.+.+.. .+.++..+++.||||+|||++|++|++.+... .+-+++|-
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~----------------------~~~~vvIs 311 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK----------------------KEEPVVIS 311 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc----------------------cCCeEEEE
Confidence 45 789999985544 45578899999999999999999999876532 23579999
Q ss_pred ccCHHHHHHHHHH-HHHhhc--CCCcEEEEEEcCCC
Q 009003 271 TPTRELALQVTDH-LKGVAK--GINVRVVPIVGGMS 303 (547)
Q Consensus 271 ~Ptr~La~qv~~~-l~~~~~--~~~~~v~~~~g~~~ 303 (547)
++|+.|..|+... +-.+.+ ..+++++++-|..+
T Consensus 312 T~T~~LQ~Ql~~kDiP~L~~~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 312 TYTIQLQQQLLEKDIPLLQKIFPFPVEAALLKGRSH 347 (928)
T ss_pred cCCHHHHHHHHHhhHHHHHHHcCCCceEEEEEcccc
Confidence 9999999998763 222222 23556666666554
No 141
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.05 E-value=5.6e-09 Score=115.29 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHH--HhcC-CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAA--AHQG-KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~--l~~~-~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.++.+|++.+.++ |+.+ =+.|+|..+|-|||+..+--+....++++. ......+.-.|||||.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--------------~~~e~~~~PSLIVCPs 1040 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--------------ESSEFNRLPSLIVCPS 1040 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--------------cchhhccCCeEEECCc
Confidence 4567899888775 2222 367999999999999866555555555422 1223445568999998
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
.|+-.|..++.+++.. +++...+|+.......+.-.++.+|+|++...+..-+.. +.-..+-|+|+||-|-|
T Consensus 1041 -TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1041 -TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred -hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCccee
Confidence 8999999999999876 455556666555444444445689999999998633211 12235679999999987
Q ss_pred hhcCChHHHHHHHHhC
Q 009003 354 IENGHFRELQSIIDML 369 (547)
Q Consensus 354 l~~~~~~~l~~i~~~l 369 (547)
.+-...+....+.|
T Consensus 1113 --kN~ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1113 --KNSKTKLTKAVKQL 1126 (1549)
T ss_pred --cchHHHHHHHHHHH
Confidence 33444444444444
No 142
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.03 E-value=1.5e-08 Score=102.47 Aligned_cols=277 Identities=17% Similarity=0.164 Sum_probs=162.4
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+.|+|...+...|..|..+++...+|-|||+..+.- ...|... --.|||||. .
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaI--A~yyraE----------------------wplliVcPA-s 251 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAI--ARYYRAE----------------------WPLLIVCPA-S 251 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHH--HHHHhhc----------------------CcEEEEecH-H
Confidence 35678999999999988999999999999999764432 2222221 238999998 6
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 276 La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
+-..|.+.|..+.....- |.++.++.+.-.. +-.-.-|.|.+.+.|..+-.. +.-..+.+||+||.|.|-
T Consensus 252 vrftWa~al~r~lps~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk- 321 (689)
T KOG1000|consen 252 VRFTWAKALNRFLPSIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLK- 321 (689)
T ss_pred HhHHHHHHHHHhcccccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhh-
Confidence 667788888887654432 5555555433211 112246889999887644321 223458999999999875
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh--h------------------HHHH
Q 009003 356 NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA--D------------------FRKK 415 (547)
Q Consensus 356 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~--~------------------~~~~ 415 (547)
.+-...+..++..+. .-..+|++|.|...+. + |...
T Consensus 322 ~sktkr~Ka~~dllk------------------------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~r 377 (689)
T KOG1000|consen 322 DSKTKRTKAATDLLK------------------------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIR 377 (689)
T ss_pred ccchhhhhhhhhHHH------------------------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHH
Confidence 334444555544443 4567899999975332 2 2222
Q ss_pred hhhccc-ccccccCCcchHHHH---HHHhcc-cCceeEEeccccccccccceEEEEEcc---------------------
Q 009003 416 LKHGSL-KSKQSVNGLNSIETL---SERAGM-RANVAIVDLTNMCVLANKLEESFIECK--------------------- 469 (547)
Q Consensus 416 l~~~~~-~~~~~~~~~~~i~~l---~~~~~~-~~~~~~i~~~~~~~~~~~i~~~~~~~~--------------------- 469 (547)
+..+.. .......+....+++ .....+ +.-.. .-....+..-++..+.+.
T Consensus 378 YCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~----dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~ 453 (689)
T KOG1000|consen 378 YCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKA----DVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVN 453 (689)
T ss_pred hcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHH----HHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhh
Confidence 211111 111111111122211 111100 00000 000001111111111111
Q ss_pred ----------------ccchHHHHHHHHHh------cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHH
Q 009003 470 ----------------EEDKDAYLYYILSV------HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLK 527 (547)
Q Consensus 470 ----------------~~~k~~~l~~ll~~------~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~ 527 (547)
...|...++..+.. .++.+++|||......+.|...+...++..+-+.|..+..+|.-
T Consensus 454 ~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~l 533 (689)
T KOG1000|consen 454 SMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTL 533 (689)
T ss_pred hhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHH
Confidence 01122233333333 24679999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 009003 528 LFSQMITW 535 (547)
Q Consensus 528 il~~F~~~ 535 (547)
....|+.-
T Consensus 534 l~qsFQ~s 541 (689)
T KOG1000|consen 534 LCQSFQTS 541 (689)
T ss_pred HHHHhccc
Confidence 99999864
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=2.5e-08 Score=108.98 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=99.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. +|+++|.-.--. |+.| -|+...||-|||++..+|+.-..+ .|-.|-||+.
T Consensus 75 lG~-r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL-----------------------~GkgVhVVTv 127 (925)
T PRK12903 75 LGK-RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNAL-----------------------TGKGVIVSTV 127 (925)
T ss_pred hCC-CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHh-----------------------cCCceEEEec
Confidence 465 889999877744 4555 379999999999999999864432 2345788888
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC---CCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~---~~~~~l~~l~~lViD 348 (547)
.--||.+=.+.+..+...+|+.|+++..+.......... .+||+++|..-| ++.|...- ........+.+.|||
T Consensus 128 NdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVD 205 (925)
T PRK12903 128 NEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLID 205 (925)
T ss_pred chhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeec
Confidence 889999999999999999999999998887776544433 589999999876 34443210 111225778899999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|+|.+|
T Consensus 206 EVDSIL 211 (925)
T PRK12903 206 EVDSIL 211 (925)
T ss_pred cchhee
Confidence 999975
No 144
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.99 E-value=2.4e-08 Score=100.85 Aligned_cols=131 Identities=22% Similarity=0.277 Sum_probs=89.6
Q ss_pred CCcHHHHHHHHHHHhcCC----cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 197 EPTPIQKACIPAAAHQGK----DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~----dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.+-|+|.+.+.++..+.. -.|+....|.|||...+..+|..+ .+-..|||+|
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~------------------------~ra~tLVvaP 239 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV------------------------DRAPTLVVAP 239 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc------------------------ccCCeeEEcc
Confidence 566899998877654322 357888999999987655444432 2234999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC----------CcccCCCc
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK----------HLVELHTL 342 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~----------~~~~l~~l 342 (547)
+.+| .||.+++..+.. -..++...+|......-.. + .+.|++++|...+-........ ..-.|.++
T Consensus 240 ~VAl-mQW~nEI~~~T~-gslkv~~YhG~~R~~nike-l-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi 315 (791)
T KOG1002|consen 240 TVAL-MQWKNEIERHTS-GSLKVYIYHGAKRDKNIKE-L-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSI 315 (791)
T ss_pred HHHH-HHHHHHHHHhcc-CceEEEEEecccccCCHHH-h-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhc
Confidence 9887 589999999877 3567777777654432222 2 3589999999998766543111 11226666
Q ss_pred cE--EEEeccchhhh
Q 009003 343 SF--FVLDEADRMIE 355 (547)
Q Consensus 343 ~~--lViDEah~ll~ 355 (547)
++ ||+||||.|-+
T Consensus 316 ~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 316 KFYRIILDEAHNIKD 330 (791)
T ss_pred eeeeeehhhhccccc
Confidence 55 89999999743
No 145
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.97 E-value=4.6e-09 Score=116.29 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCCcHHHHHHHHHHHh---cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 196 KEPTPIQKACIPAAAH---QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~---~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
..++.+|...+.++++ ++.++|+....|-|||+- .+..|..|+.... ..| -.|||||
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~------------------~~g-pflvvvp 428 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ------------------IHG-PFLVVVP 428 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh------------------ccC-CeEEEee
Confidence 5788999999888754 588999999999999965 2344555544321 122 3688888
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cC-----CCcEEEeChHHHHHHHhcCCCCcccCCCcc
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KA-----RPEVVVGTPGRLWELMSGGEKHLVELHTLS 343 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~-----~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~ 343 (547)
... +..|.++|...+ ..++++.+|........+.. .. +++++++|.+.++.-- ..+.--.+.
T Consensus 429 lst-~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk-----~~L~~i~w~ 499 (1373)
T KOG0384|consen 429 LST-ITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK-----AELSKIPWR 499 (1373)
T ss_pred hhh-hHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH-----hhhccCCcc
Confidence 854 455777777664 77888888887765433322 22 5899999999886311 111122457
Q ss_pred EEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 344 FFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 344 ~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
+++|||||+| .+-...+...+..+.
T Consensus 500 ~~~vDeahrL--kN~~~~l~~~l~~f~ 524 (1373)
T KOG0384|consen 500 YLLVDEAHRL--KNDESKLYESLNQFK 524 (1373)
T ss_pred eeeecHHhhc--CchHHHHHHHHHHhc
Confidence 8999999999 444455555555554
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.91 E-value=1.2e-08 Score=108.37 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh------hhhcCCCC
Q 009003 471 EDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT------WIRKRPKG 542 (547)
Q Consensus 471 ~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~------~~~k~~~g 542 (547)
..|...|..+|... .+.++|||........-|-..|..+++...-+.|.+....|..+++.|-. |+..-++|
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 45778888888643 45799999999999999999999999999999999999999999999965 44556677
Q ss_pred CCCC
Q 009003 543 DRGK 546 (547)
Q Consensus 543 ~~~~ 546 (547)
+-|+
T Consensus 840 G~GI 843 (941)
T KOG0389|consen 840 GFGI 843 (941)
T ss_pred ccee
Confidence 7765
No 147
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=3.5e-08 Score=109.25 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=93.4
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+++|.-.--. ||+| -|+...||-|||++..+|+.-..+. |-.|=||+..--|
T Consensus 138 ~~ydVQLiGgiv-Lh~G--~IAEM~TGEGKTLvatlp~yLnAL~-----------------------G~gVHvVTvNDYL 191 (1025)
T PRK12900 138 VPYDVQLIGGIV-LHSG--KISEMATGEGKTLVSTLPTFLNALT-----------------------GRGVHVVTVNDYL 191 (1025)
T ss_pred cccchHHhhhHH-hhcC--CccccCCCCCcchHhHHHHHHHHHc-----------------------CCCcEEEeechHh
Confidence 577787665433 3444 4689999999999999998655433 2346677777799
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEeccch
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViDEah~ 352 (547)
|.+=.+++..+...+|+.|.++..+.+..... -.-.+||.++|..-| .+.|... .....-...+.+.||||+|.
T Consensus 192 A~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr--~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 192 AQRDKEWMNPVFEFHGLSVGVILNTMRPEERR--EQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred hhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHH--HhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 99999999999999999999997776665443 335689999999876 3333211 01112256778999999999
Q ss_pred hh
Q 009003 353 MI 354 (547)
Q Consensus 353 ll 354 (547)
+|
T Consensus 270 vL 271 (1025)
T PRK12900 270 VL 271 (1025)
T ss_pred hh
Confidence 75
No 148
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.86 E-value=4.9e-08 Score=107.97 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=57.8
Q ss_pred chHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC
Q 009003 472 DKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP 540 (547)
Q Consensus 472 ~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~ 540 (547)
.+...|...+... .+.++||||+|+..|+.|+..|...|+++..+||+|++.+|..++..|+.|.....
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vl 500 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEE
Confidence 3445555555432 46789999999999999999999999999999999999999999999999875543
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.85 E-value=5.6e-08 Score=108.28 Aligned_cols=66 Identities=29% Similarity=0.300 Sum_probs=52.0
Q ss_pred CCCCCcHHHHHHHHHH---Hhc-----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCe
Q 009003 194 QFKEPTPIQKACIPAA---AHQ-----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHL 265 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~~---l~~-----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (547)
|| .+++-|.+.+..+ +.. ++.++|.|+||+|||++|++|++.+.... +-
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~----------------------~k 79 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE----------------------KK 79 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc----------------------CC
Confidence 55 7899999865544 433 36788999999999999999998765432 34
Q ss_pred EEEEEccCHHHHHHHHH
Q 009003 266 RALIITPTRELALQVTD 282 (547)
Q Consensus 266 ~~lil~Ptr~La~qv~~ 282 (547)
++||=+.|+.|-.|+..
T Consensus 80 ~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 80 KLVISTATVALQEQLVS 96 (697)
T ss_pred eEEEEcCCHHHHHHHHh
Confidence 79999999999999864
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=98.83 E-value=3.6e-09 Score=113.02 Aligned_cols=141 Identities=23% Similarity=0.249 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHhc---CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 185 LLMKSIYRLQFKEPTPIQKACIPAAAHQ---GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 185 ~l~~~l~~~~~~~~~~iQ~~~i~~~l~~---~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
.+..++.-..-..|+|+|+.||...+.. +...=+...+|+|||+.. |-+.+.+-.
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~--------------------- 206 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA--------------------- 206 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh---------------------
Confidence 3344444455668999999999988741 112223345789999764 334454422
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHH-------------------------HHHhcCCCc
Q 009003 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ-------------------------ERLLKARPE 316 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~-------------------------~~~~~~~~d 316 (547)
.++|+|||+.+|..|..+++..- ..+.++...++++....+- ...-..+--
T Consensus 207 ---~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~ 282 (1518)
T COG4889 207 ---ARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLT 282 (1518)
T ss_pred ---hheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcE
Confidence 47999999999999999988754 3346666655554332111 011123456
Q ss_pred EEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 317 VVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 317 Ilv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
|+++|...+...-.. ...-+..+++||+||||+-.
T Consensus 283 vvFsTYQSl~~i~eA---Qe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 283 VVFSTYQSLPRIKEA---QEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred EEEEcccchHHHHHH---HHcCCCCccEEEecchhccc
Confidence 999999888655422 12347788999999999964
No 151
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.81 E-value=1.6e-07 Score=91.27 Aligned_cols=133 Identities=23% Similarity=0.334 Sum_probs=96.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|+ .|+++|..++-.+ +.|+ |+...||-|||++..+|++-..+ .|..|=|++.
T Consensus 74 ~g~-~p~~vQll~~l~L-~~G~--laEm~TGEGKTli~~l~a~~~AL-----------------------~G~~V~vvT~ 126 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALAL-HKGR--LAEMKTGEGKTLIAALPAALNAL-----------------------QGKGVHVVTS 126 (266)
T ss_dssp TS-----HHHHHHHHHH-HTTS--EEEESTTSHHHHHHHHHHHHHHT-----------------------TSS-EEEEES
T ss_pred cCC-cccHHHHhhhhhc-ccce--eEEecCCCCcHHHHHHHHHHHHH-----------------------hcCCcEEEec
Confidence 455 8999999998555 4555 99999999999998888765543 2456899999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHH-HHHhcCC---CCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW-ELMSGGE---KHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~-~~l~~~~---~~~~~l~~l~~lViD 348 (547)
+..||.+=++.+..+...+|+.+..+.++.......... .+||+.+|...|. +.|.... ........+.++|||
T Consensus 127 NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivD 204 (266)
T PF07517_consen 127 NDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVD 204 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEEC
T ss_pred cHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEe
Confidence 999999999999999999999999999988865443333 3679999999884 3443221 111125788999999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|||.++
T Consensus 205 EvDs~L 210 (266)
T PF07517_consen 205 EVDSIL 210 (266)
T ss_dssp THHHHT
T ss_pred ccceEE
Confidence 999986
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.74 E-value=3.1e-07 Score=102.46 Aligned_cols=165 Identities=25% Similarity=0.241 Sum_probs=100.7
Q ss_pred CCcHHHHHHHHHHHh-------cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEE
Q 009003 197 EPTPIQKACIPAAAH-------QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALI 269 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~-------~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 269 (547)
.-+.+|-.|+..+.. +|-=+|-.|.||+|||++=+- |+..| .....++|..|
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaL--------------------sd~~~g~Rfsi 466 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYAL--------------------RDDKQGARFAI 466 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHh--------------------CCCCCCceEEE
Confidence 345689888877642 233456789999999977322 22222 13455778888
Q ss_pred EccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH----------------------------------------
Q 009003 270 ITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER---------------------------------------- 309 (547)
Q Consensus 270 l~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---------------------------------------- 309 (547)
-.-.|.|-.|....+++...--.-...+++|+.....-..
T Consensus 467 ALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~ 546 (1110)
T TIGR02562 467 ALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIE 546 (1110)
T ss_pred EccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchh
Confidence 8999999989888888764433334555666544322110
Q ss_pred ---HhcC--------CCcEEEeChHHHHHHHhcCC--CCcc---cCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCC
Q 009003 310 ---LLKA--------RPEVVVGTPGRLWELMSGGE--KHLV---ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373 (547)
Q Consensus 310 ---~~~~--------~~dIlv~TP~~l~~~l~~~~--~~~~---~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~ 373 (547)
.+.. ...|+|||+..++....... .... .|.+ +.|||||+|.+- ......+..++..+..
T Consensus 547 l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~-svlVlDEVHaYD-~~~~~~L~rlL~w~~~-- 622 (1110)
T TIGR02562 547 LLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMS-SDLILDEPDDYE-PEDLPALLRLVQLAGL-- 622 (1110)
T ss_pred hhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcC-CCEEEECCccCC-HHHHHHHHHHHHHHHH--
Confidence 0000 15799999999987763211 1111 1222 689999999863 3333444444443221
Q ss_pred CCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 374 GSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
....+|+||||+|
T Consensus 623 ---------------------lG~~VlLmSATLP 635 (1110)
T TIGR02562 623 ---------------------LGSRVLLSSATLP 635 (1110)
T ss_pred ---------------------cCCCEEEEeCCCC
Confidence 3467999999998
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.66 E-value=6.6e-07 Score=97.41 Aligned_cols=244 Identities=14% Similarity=0.169 Sum_probs=129.9
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
..-.++.||+|||||.+..-++-+.+ .....++|+|...++|+.+....++...- .+
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l----------------------~~~~~~VLvVShRrSL~~sL~~rf~~~~l-~g 105 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDAL----------------------KNPDKSVLVVSHRRSLTKSLAERFKKAGL-SG 105 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhc----------------------cCCCCeEEEEEhHHHHHHHHHHHHhhcCC-Cc
Confidence 34568899999999977544433332 12345899999999999999999975511 02
Q ss_pred cEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCC------hHHHHHH
Q 009003 293 VRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH------FRELQSI 365 (547)
Q Consensus 293 ~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~------~~~l~~i 365 (547)
+....-..+ ..+. ...+-+++..+.|.++-. ..+.++++|||||+-..+..=+ ...+..+
T Consensus 106 Fv~Y~d~~~-------~~i~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~ 172 (824)
T PF02399_consen 106 FVNYLDSDD-------YIIDGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNL 172 (824)
T ss_pred ceeeecccc-------ccccccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHH
Confidence 211111011 0111 135677777777765432 3467899999999998874311 2222222
Q ss_pred HHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC-hhHHHHhhhcccccccccC-----C----------
Q 009003 366 IDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS-ADFRKKLKHGSLKSKQSVN-----G---------- 429 (547)
Q Consensus 366 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~~l~~~~~~~~~~~~-----~---------- 429 (547)
+..+ -+....+|+|-||+... .+|.+.+.. ...+.+. .
T Consensus 173 L~~l-----------------------I~~ak~VI~~DA~ln~~tvdFl~~~Rp---~~~i~vI~n~y~~~~fs~R~~~~ 226 (824)
T PF02399_consen 173 LKEL-----------------------IRNAKTVIVMDADLNDQTVDFLASCRP---DENIHVIVNTYASPGFSNRRCTF 226 (824)
T ss_pred HHHH-----------------------HHhCCeEEEecCCCCHHHHHHHHHhCC---CCcEEEEEeeeecCCcccceEEE
Confidence 2222 11456899999999722 244444421 1110000 0
Q ss_pred cchH--HHHHHHhcccCceeEEecc-ccccccccceEEEEEccccchHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHH
Q 009003 430 LNSI--ETLSERAGMRANVAIVDLT-NMCVLANKLEESFIECKEEDKDAYLYYILSVH-GQGRTIVFCTSIAALRHISSL 505 (547)
Q Consensus 430 ~~~i--~~l~~~~~~~~~~~~i~~~-~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~k~LVF~~s~~~a~~L~~~ 505 (547)
+..+ ..+.... .+.-..-... .............+ ......+.-.++... .+.++-|||+|...++.++..
T Consensus 227 ~~~l~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~ 301 (824)
T PF02399_consen 227 LRSLGTDTLAAAL--NPEDENADTSPTPKHSPDPTATAAI---SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARF 301 (824)
T ss_pred ecccCcHHHHHHh--CCcccccccCCCcCCCCcccccccc---ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHH
Confidence 0000 0011100 0000000000 00000000000111 122333444444433 466788899999999999999
Q ss_pred HHHcCCceEEecCCcCHH
Q 009003 506 LKILGIDVWTLHAQMQQR 523 (547)
Q Consensus 506 L~~~g~~v~~lhg~m~~~ 523 (547)
....+..|..++|.-+..
T Consensus 302 ~~~~~~~Vl~l~s~~~~~ 319 (824)
T PF02399_consen 302 CARFTKKVLVLNSTDKLE 319 (824)
T ss_pred HHhcCCeEEEEcCCCCcc
Confidence 999999999999877665
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.64 E-value=9.4e-08 Score=106.83 Aligned_cols=74 Identities=32% Similarity=0.380 Sum_probs=60.1
Q ss_pred HcCCCCCcHHHHHHHHH---HHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEE
Q 009003 192 RLQFKEPTPIQKACIPA---AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRAL 268 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~---~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (547)
.+....|++.|.+.+.. ++.++..+++.||||+|||++|++|++...... +.+++
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----------------------~~~vi 67 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----------------------GKKVI 67 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----------------------CCcEE
Confidence 34455899999988754 354667799999999999999999999886443 25799
Q ss_pred EEccCHHHHHHHHHHHHHh
Q 009003 269 IITPTRELALQVTDHLKGV 287 (547)
Q Consensus 269 il~Ptr~La~qv~~~l~~~ 287 (547)
|.++|+.|-.|+.+....+
T Consensus 68 ist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 68 ISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred EECCCHHHHHHHHHhhcch
Confidence 9999999999998887664
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=3e-07 Score=103.13 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=57.7
Q ss_pred cCCCCCcHHHHHHHHHH---HhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEE
Q 009003 193 LQFKEPTPIQKACIPAA---AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALI 269 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~---l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 269 (547)
+.|..++|.|.+.+..+ +..+..+++.+|||+|||++.+.|+|.++.... ..+++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------------------~~~kIiy 65 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------------------EVRKIIY 65 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------------------ccccEEE
Confidence 35666799999887654 347899999999999999999999998764321 1257788
Q ss_pred EccCHHHHHHHHHHHHHh
Q 009003 270 ITPTRELALQVTDHLKGV 287 (547)
Q Consensus 270 l~Ptr~La~qv~~~l~~~ 287 (547)
.+.|..=..|+.++++++
T Consensus 66 ~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 66 ASRTHSQLEQATEELRKL 83 (705)
T ss_pred EcccchHHHHHHHHHHhh
Confidence 888887777888777774
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.55 E-value=1e-06 Score=96.82 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=90.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcC
Q 009003 222 TGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGG 301 (547)
Q Consensus 222 TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~ 301 (547)
+|||||..|+-.+-..+.. |-.+|||+|...|..|+...|..... +..+..++++
T Consensus 169 ~GSGKTevyl~~i~~~l~~-----------------------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~ 223 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA-----------------------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAG 223 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc-----------------------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCC
Confidence 5999999987765555422 34799999999999999999987643 2568889998
Q ss_pred CCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh---hcCC---hHHHHHHHHhCCC
Q 009003 302 MSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI---ENGH---FRELQSIIDMLPM 371 (547)
Q Consensus 302 ~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll---~~~~---~~~l~~i~~~l~~ 371 (547)
.+....... ..+...|+|+|-..++ ..+.++.+|||||=|.-. +.+. ...+...+...
T Consensus 224 l~~~~R~~~w~~~~~G~~~IViGtRSAvF----------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~-- 291 (665)
T PRK14873 224 LGPADRYRRWLAVLRGQARVVVGTRSAVF----------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ-- 291 (665)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEcceeEE----------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH--
Confidence 887654333 3456899999965542 457899999999998642 1111 23444444443
Q ss_pred CCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 372 TNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
....+|+.|||.+
T Consensus 292 -----------------------~~~~lvLgSaTPS 304 (665)
T PRK14873 292 -----------------------HGCALLIGGHART 304 (665)
T ss_pred -----------------------cCCcEEEECCCCC
Confidence 4578999999976
No 157
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.54 E-value=1.2e-06 Score=96.72 Aligned_cols=140 Identities=21% Similarity=0.263 Sum_probs=95.8
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAA---HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l---~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.++.+|+..+.++. +++-|.|+....|-|||.-. +.+|.|+.-. .+..|| -||||||
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACe------------------egnWGP-HLIVVpT 674 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACE------------------EGNWGP-HLIVVPT 674 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhc------------------ccCCCC-ceEEeec
Confidence 46788999988764 34558899999999999663 4445554211 123333 6888999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH---HhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEecc
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER---LLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEa 350 (547)
-.+ ..|-=+|+++|. +++|...+|........+ .-.+-++|+|++...++.-+. .|.-.++.|+|||||
T Consensus 675 svi-LnWEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~-----AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 675 SVI-LNWEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT-----AFKRKRWQYLVLDEA 746 (1958)
T ss_pred hhh-hhhhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH-----HHHhhccceeehhhh
Confidence 654 457888898877 678888888755433222 122457999999988876543 356678999999999
Q ss_pred chhhhcCCh-HHHHHHH
Q 009003 351 DRMIENGHF-RELQSII 366 (547)
Q Consensus 351 h~ll~~~~~-~~l~~i~ 366 (547)
|.| .+|. .+++.++
T Consensus 747 qnI--KnfksqrWQAll 761 (1958)
T KOG0391|consen 747 QNI--KNFKSQRWQALL 761 (1958)
T ss_pred hhh--cchhHHHHHHHh
Confidence 999 4553 3444444
No 158
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.54 E-value=1e-06 Score=98.61 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=71.1
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH-----Hh-
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK-----GV- 287 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~-----~~- 287 (547)
.++.+..+||+|||.+|+-.++..... .+..+.||+||+.+.-..+.+.+. .+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---------------------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF 118 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---------------------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHF 118 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---------------------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHH
Confidence 478999999999999988777655322 223579999999988777776554 12
Q ss_pred ---hcCCCcEEEEEEcCC-------C-HHHHHHHhc------CCCcEEEeChHHHHHHHh-cCC---------CCcc-cC
Q 009003 288 ---AKGINVRVVPIVGGM-------S-TEKQERLLK------ARPEVVVGTPGRLWELMS-GGE---------KHLV-EL 339 (547)
Q Consensus 288 ---~~~~~~~v~~~~g~~-------~-~~~~~~~~~------~~~dIlv~TP~~l~~~l~-~~~---------~~~~-~l 339 (547)
..+..+++..+.++. . +..-..-.. +...|+|+|-+.|..-.. +.. ...+ .+
T Consensus 119 ~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i 198 (986)
T PRK15483 119 SQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDAL 198 (986)
T ss_pred HHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHH
Confidence 123334554454432 0 111111111 257999999998854221 100 0011 12
Q ss_pred CCc-cEEEEeccchhh
Q 009003 340 HTL-SFFVLDEADRMI 354 (547)
Q Consensus 340 ~~l-~~lViDEah~ll 354 (547)
... -+||+||+|++-
T Consensus 199 ~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 199 AATRPVVIIDEPHRFP 214 (986)
T ss_pred HhCCCEEEEECCCCCC
Confidence 222 378999999994
No 159
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.41 E-value=1.4e-06 Score=89.75 Aligned_cols=213 Identities=16% Similarity=0.130 Sum_probs=128.3
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
.+-++-+|||.||||.- +|+++.... ..++--|.|-||..|++.+... |
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak-----------------------sGvycGPLrLLA~EV~~r~na~----g 239 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK-----------------------SGVYCGPLRLLAHEVYDRLNAL----G 239 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc-----------------------cceecchHHHHHHHHHHHhhhc----C
Confidence 34466789999999944 567765442 4788899999999999999987 7
Q ss_pred cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCCh-HHHHHHHHhCCC
Q 009003 293 VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF-RELQSIIDMLPM 371 (547)
Q Consensus 293 ~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~-~~l~~i~~~l~~ 371 (547)
+.+-+++|......... .+.+..+-||-+.+- .-..+++.||||...|-+.... .....++....
T Consensus 240 ipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~A- 305 (700)
T KOG0953|consen 240 IPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAA- 305 (700)
T ss_pred CCccccccceeeecCCC--CCcccceEEEEEEee-----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhh-
Confidence 88877877643222111 123567777766531 1245789999999998765542 23333332211
Q ss_pred CCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEec
Q 009003 372 TNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDL 451 (547)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~ 451 (547)
....+++=-|-+ +-+..++...+. .. .+
T Consensus 306 -----------------------dEiHLCGepsvl------------------------dlV~~i~k~TGd--~v-ev-- 333 (700)
T KOG0953|consen 306 -----------------------DEIHLCGEPSVL------------------------DLVRKILKMTGD--DV-EV-- 333 (700)
T ss_pred -----------------------hhhhccCCchHH------------------------HHHHHHHhhcCC--ee-EE--
Confidence 112222211111 112222222111 11 00
Q ss_pred cccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCc-eEEecCCcCHHHHHHHHH
Q 009003 452 TNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID-VWTLHAQMQQRARLKLFS 530 (547)
Q Consensus 452 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~-v~~lhg~m~~~eR~~il~ 530 (547)
+.|-....-...+.+..-+....+|-+|| |-|++.+..+...+.+.|.. |++++|.+++..|.+--.
T Consensus 334 -----------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~ 401 (700)
T KOG0953|consen 334 -----------REYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAA 401 (700)
T ss_pred -----------EeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHH
Confidence 11111111111123333444455677776 55889999999999988765 999999999999999888
Q ss_pred HHHh
Q 009003 531 QMIT 534 (547)
Q Consensus 531 ~F~~ 534 (547)
.|-+
T Consensus 402 ~FNd 405 (700)
T KOG0953|consen 402 LFND 405 (700)
T ss_pred HhCC
Confidence 8855
No 160
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.39 E-value=1.3e-06 Score=92.10 Aligned_cols=155 Identities=23% Similarity=0.196 Sum_probs=96.7
Q ss_pred CCcHHHHHHHHHHHhc----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 197 EPTPIQKACIPAAAHQ----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.+-|+|..++.++++. +.-.|+....|-|||+..+..++..-...+.+ ... ..... .+|||||
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~-----~~~-------~~~a~-~TLII~P 391 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAR-----EKK-------GESAS-KTLIICP 391 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhh-----ccc-------ccccC-CeEEeCc
Confidence 5568999999888752 34578899999999987544444332222111 000 11111 4999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH----HHhcCCCCcccCCC--ccEEE
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE----LMSGGEKHLVELHT--LSFFV 346 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~----~l~~~~~~~~~l~~--l~~lV 346 (547)
. .|..||..++......--++|.+++|.... .........+||||+|..-+.. .+..+ ...-.|.. +..||
T Consensus 392 a-Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~r-~i~~~~L~~YDvViTTY~lva~~~~~e~~~~-~~~spL~~I~W~RVI 468 (901)
T KOG4439|consen 392 A-SLIHQWEAEVARRLEQNALSVYLYHGPNKR-EISAKELRKYDVVITTYNLVANKPDDELEEG-KNSSPLARIAWSRVI 468 (901)
T ss_pred H-HHHHHHHHHHHHHHhhcceEEEEecCCccc-cCCHHHHhhcceEEEeeeccccCCchhhhcc-cCccHHHHhhHHHhh
Confidence 8 789999999998888778999999988641 1112222468999999877654 11111 11111333 45699
Q ss_pred EeccchhhhcCChHHHHHHHHhC
Q 009003 347 LDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 347 iDEah~ll~~~~~~~l~~i~~~l 369 (547)
+||||.+- +.....-..+..|
T Consensus 469 LDEAH~Ir--N~~tq~S~AVC~L 489 (901)
T KOG4439|consen 469 LDEAHNIR--NSNTQCSKAVCKL 489 (901)
T ss_pred hhhhhhhc--ccchhHHHHHHHH
Confidence 99999884 3333333334444
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.29 E-value=1.2e-05 Score=92.33 Aligned_cols=142 Identities=22% Similarity=0.189 Sum_probs=92.0
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCc
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~ 293 (547)
+..+|+=-||||||+..... .+.+.+. ...|.++|||-.++|-.|+.+.|..++.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~~--------------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~ 332 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLEL--------------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN 332 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHhc--------------------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh
Confidence 46899999999999874332 2333221 34578999999999999999999998664433
Q ss_pred EEEEEEcCCCHHHHHHHhcCC-CcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCC
Q 009003 294 RVVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372 (547)
Q Consensus 294 ~v~~~~g~~~~~~~~~~~~~~-~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~ 372 (547)
.. ...+...-.+.+... ..|+|||-..|-..+.........-.+ -+||+||||+-- +...-..+...++
T Consensus 333 ~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~-ivvI~DEaHRSQ---~G~~~~~~~~~~~-- 402 (962)
T COG0610 333 DP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKN-VVVIIDEAHRSQ---YGELAKLLKKALK-- 402 (962)
T ss_pred cc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCc-EEEEEechhhcc---ccHHHHHHHHHhc--
Confidence 22 233343444555533 489999999998877543111112222 268889999742 3333334444443
Q ss_pred CCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 373 NGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
....++||.|+-..
T Consensus 403 -----------------------~a~~~gFTGTPi~~ 416 (962)
T COG0610 403 -----------------------KAIFIGFTGTPIFK 416 (962)
T ss_pred -----------------------cceEEEeeCCcccc
Confidence 35789999997533
No 162
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.26 E-value=2.1e-06 Score=94.03 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=55.5
Q ss_pred ccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 470 EEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 470 ~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
...|+..|..++-+. .++++|.||.-.....-|..+|...++...-+.|.....+|-..++.|-.
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~ 774 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNA 774 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcC
Confidence 345667777776533 57899999999999999999999999999999999999999999999954
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.24 E-value=9.6e-06 Score=76.18 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=67.1
Q ss_pred CCcHHHHHHHHHHHhcCC-cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 197 EPTPIQKACIPAAAHQGK-DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~-dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
++++-|..++..++.+++ -++++|+.|+|||.+ +-.+...+.. .+.++++++||..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~--l~~~~~~~~~---------------------~g~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL--LKALAEALEA---------------------AGKRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH--HHHHHHHHHH---------------------TT--EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH--HHHHHHHHHh---------------------CCCeEEEECCcHH
Confidence 368899999999986554 467889999999954 3333333222 1368999999998
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC-CCcccCCCccEEEEeccchhh
Q 009003 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 276 La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~-~~~~~l~~l~~lViDEah~ll 354 (547)
.+..+.+.+. + -..|-..++....... .....+....+||||||-.+.
T Consensus 58 Aa~~L~~~~~-------~------------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~ 106 (196)
T PF13604_consen 58 AAKELREKTG-------I------------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD 106 (196)
T ss_dssp HHHHHHHHHT-------S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B
T ss_pred HHHHHHHhhC-------c------------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC
Confidence 8877655521 1 1223222222111100 000115666899999999764
Q ss_pred hcCChHHHHHHHHhCC
Q 009003 355 ENGHFRELQSIIDMLP 370 (547)
Q Consensus 355 ~~~~~~~l~~i~~~l~ 370 (547)
...+..++..++
T Consensus 107 ----~~~~~~ll~~~~ 118 (196)
T PF13604_consen 107 ----SRQLARLLRLAK 118 (196)
T ss_dssp ----HHHHHHHHHHS-
T ss_pred ----HHHHHHHHHHHH
Confidence 356777777776
No 164
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.23 E-value=3.7e-06 Score=80.96 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHhcCCc-EEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 198 PTPIQKACIPAAAHQGKD-VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~d-vli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
+.+-|..|+..++ .... .+|.||+|+|||... ..++..++.... ......+.++||++||...
T Consensus 2 ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~--------------~~~~~~~~~il~~~~sN~a 65 (236)
T PF13086_consen 2 LNESQREAIQSAL-SSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFK--------------SRSADRGKKILVVSPSNAA 65 (236)
T ss_dssp --HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHH-HHHHHHH---------------------HCCCSS-EEEEESSHHH
T ss_pred CCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHH-HHHHHHhccchh--------------hhhhhccccceeecCCchh
Confidence 6789999999888 4566 899999999999543 334444321100 0013456789999999999
Q ss_pred HHHHHHHHHH
Q 009003 277 ALQVTDHLKG 286 (547)
Q Consensus 277 a~qv~~~l~~ 286 (547)
+.++.+.+.+
T Consensus 66 vd~~~~~l~~ 75 (236)
T PF13086_consen 66 VDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999999888
No 165
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.22 E-value=4.9e-06 Score=85.81 Aligned_cols=282 Identities=10% Similarity=-0.002 Sum_probs=165.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEE
Q 009003 190 IYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALI 269 (547)
Q Consensus 190 l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 269 (547)
+..+.-.....+|..+|..+ ++|+++++.-.|.+||.++|.+.....+.... ....++
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~---------------------~s~~~~ 336 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFA-SEGRADGGNEARQAGKGTCPTSGSRKFQTLCH---------------------ATNSLL 336 (1034)
T ss_pred HhcccccchhhhhHHHHhhh-hhcccccccchhhcCCccCcccchhhhhhcCc---------------------ccceec
Confidence 34455567788999999887 58999999999999999999998877664321 234688
Q ss_pred EccCHHHHHHHHHHHHHhhcCC---CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH-HhcCCCCcccCCCccEE
Q 009003 270 ITPTRELALQVTDHLKGVAKGI---NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL-MSGGEKHLVELHTLSFF 345 (547)
Q Consensus 270 l~Ptr~La~qv~~~l~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~-l~~~~~~~~~l~~l~~l 345 (547)
+.||.+++....+-+.-+...+ .-.++-.+.+..........+.+..++++.|...... |.+...+...+-...++
T Consensus 337 ~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~ 416 (1034)
T KOG4150|consen 337 PSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCK 416 (1034)
T ss_pred chhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHh
Confidence 8899888765433322111111 1112223344444344555667889999999887544 33332223334455688
Q ss_pred EEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhccccccc
Q 009003 346 VLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQ 425 (547)
Q Consensus 346 ViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~ 425 (547)
++||+|..+ .-+..++...++.|... ..|.+- ....|++-.|||+.......+.+.
T Consensus 417 ~~~~~~~Y~-~~~~~~~~~~~R~L~~L-----------~~~F~~----~~~~~~~~~~~~~K~~~~~~~~~~-------- 472 (1034)
T KOG4150|consen 417 DTNSCALYL-FPTKALAQDQLRALSDL-----------IKGFEA----SINMGVYDGDTPYKDRTRLRSELA-------- 472 (1034)
T ss_pred cccceeeee-cchhhHHHHHHHHHHHH-----------HHHHHh----hcCcceEeCCCCcCCHHHHHHHhc--------
Confidence 999999775 33444443333332100 001111 146799999999874444333332
Q ss_pred ccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc------ccchHHHHH---HHHH--hcCCCcEEEEeC
Q 009003 426 SVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK------EEDKDAYLY---YILS--VHGQGRTIVFCT 494 (547)
Q Consensus 426 ~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~------~~~k~~~l~---~ll~--~~~~~k~LVF~~ 494 (547)
++. ...++.. .-.+....++++.-+ ...|...+. .++. ...+-++|.||.
T Consensus 473 ---------------~~~-E~~Li~~---DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~ 533 (1034)
T KOG4150|consen 473 ---------------NLS-ELELVTI---DGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCP 533 (1034)
T ss_pred ---------------CCc-ceEEEEe---cCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEecc
Confidence 111 1112211 112222334444332 122222221 1221 123569999999
Q ss_pred ChHHHHHHHHHHHHc----C----CceEEecCCcCHHHHHHHHHHHHhhh
Q 009003 495 SIAALRHISSLLKIL----G----IDVWTLHAQMQQRARLKLFSQMITWI 536 (547)
Q Consensus 495 s~~~a~~L~~~L~~~----g----~~v~~lhg~m~~~eR~~il~~F~~~~ 536 (547)
+++-|+.+...-+.. | -.+..|.|+....+|.+|...+--|.
T Consensus 534 ~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 534 SRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 999999887766553 2 14667899999999999998775553
No 166
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.07 E-value=1.1e-05 Score=85.34 Aligned_cols=142 Identities=20% Similarity=0.247 Sum_probs=96.8
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAA---HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l---~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
++-++|...+.++. .+|-+.|+....|-|||.. .+.+|.||.++.. ..|| -|||+|.
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~n------------------IwGP-FLVVtpa 626 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHN------------------IWGP-FLVVTPA 626 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhcc------------------CCCc-eEEeehH
Confidence 45578888887764 3678999999999999966 4667778876642 3344 5788898
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh---------cCCCcEEEeChHHHHHHHhcCCCCcccCCCccE
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL---------KARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---------~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~ 344 (547)
..| ..|+.++..|+. .++++...|+......-+.+ ..+++|+|+|...++.- .+.+.--++.|
T Consensus 627 StL-~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD-----eky~qkvKWQY 698 (1185)
T KOG0388|consen 627 STL-HNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD-----EKYLQKVKWQY 698 (1185)
T ss_pred HHH-hHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech-----HHHHHhhhhhh
Confidence 655 568888888866 56777778887654433331 23689999998876431 11233335689
Q ss_pred EEEeccchhhhcCChHHHHHHHH
Q 009003 345 FVLDEADRMIENGHFRELQSIID 367 (547)
Q Consensus 345 lViDEah~ll~~~~~~~l~~i~~ 367 (547)
+|+|||..|- ......+..++.
T Consensus 699 MILDEAQAIK-SSsS~RWKtLLs 720 (1185)
T KOG0388|consen 699 MILDEAQAIK-SSSSSRWKTLLS 720 (1185)
T ss_pred eehhHHHHhh-hhhhhHHHHHhh
Confidence 9999999985 334455555553
No 167
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.03 E-value=3.5e-05 Score=83.87 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHHh---cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhh---hhh-------h----hh-hhhh
Q 009003 197 EPTPIQKACIPAAAH---QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKM---LED-------K----GE-EAEK 258 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~---~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~---~~~-------~----~~-~~~~ 258 (547)
.|++.|...+-.+++ ...+.++.+|||+|||++.+-..|.+......+..+. .+. . +. ....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 789999887766543 5678999999999999886655555443333111111 111 0 00 0001
Q ss_pred cCC----CCCeEEEEEccCHHHHHHHHHHHHHhhc
Q 009003 259 YAP----KGHLRALIITPTRELALQVTDHLKGVAK 289 (547)
Q Consensus 259 ~~~----~~~~~~lil~Ptr~La~qv~~~l~~~~~ 289 (547)
..+ .+.|++.+-.-|..-..|+.+++++.+-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 111 2357788888888888999999987743
No 168
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.00 E-value=0.00024 Score=82.34 Aligned_cols=136 Identities=26% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCCcHHHHHHHHHHH---h-cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 196 KEPTPIQKACIPAAA---H-QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l---~-~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
..+.++|...+.++. . .+.+.+++...|.|||+..+.-+.. ++.. .....+.+||+|
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~------------------~~~~~~~~liv~ 397 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLES------------------IKVYLGPALIVV 397 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhc------------------ccCCCCCeEEEe
Confidence 467788998887654 1 3667788899999999775444333 2211 011135799999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCC-----HHHHHHHhcCC----CcEEEeChHHHHHHHhcCCCCcccCCCc
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMS-----TEKQERLLKAR----PEVVVGTPGRLWELMSGGEKHLVELHTL 342 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~-----~~~~~~~~~~~----~dIlv~TP~~l~~~l~~~~~~~~~l~~l 342 (547)
|+ +++.+|.+++.+++..... +...+|... .......+... .+|+++|.+.|...+. ....+.-..+
T Consensus 398 p~-s~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~--~~~~l~~~~~ 473 (866)
T COG0553 398 PA-SLLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLV--DHGGLKKIEW 473 (866)
T ss_pred cH-HHHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhh--hHHHHhhcee
Confidence 99 7888999999888765543 555666554 22222222222 7999999999987321 1112334566
Q ss_pred cEEEEeccchhh
Q 009003 343 SFFVLDEADRMI 354 (547)
Q Consensus 343 ~~lViDEah~ll 354 (547)
.++|+||||.+-
T Consensus 474 ~~~v~DEa~~ik 485 (866)
T COG0553 474 DRVVLDEAHRIK 485 (866)
T ss_pred eeeehhhHHHHh
Confidence 899999999974
No 169
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.96 E-value=6.3e-05 Score=65.18 Aligned_cols=66 Identities=27% Similarity=0.377 Sum_probs=60.1
Q ss_pred chHHHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 472 DKDAYLYYILSVHG--QGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 472 ~k~~~l~~ll~~~~--~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
.|...+..++.... .+++||||++...++.++..|...+..+..+||+++..+|..+++.|.++..
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 79 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI 79 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 68888888887663 7899999999999999999999999999999999999999999999998764
No 170
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.94 E-value=1.9e-05 Score=73.90 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
...++-|..++..++ +..-+++.||.|||||+..+..+++.+.... --+++|+-|+.+
T Consensus 3 ~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~---------------------~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGE---------------------YDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------------------SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------------------CcEEEEEecCCC
Confidence 346789999999998 6788999999999999998888888774421 236788888875
Q ss_pred H
Q 009003 276 L 276 (547)
Q Consensus 276 L 276 (547)
.
T Consensus 61 ~ 61 (205)
T PF02562_consen 61 A 61 (205)
T ss_dssp T
T ss_pred C
Confidence 4
No 171
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.93 E-value=3.6e-05 Score=80.72 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.+.+-|..|+..+++...-.++.||+|+|||.....-+.+.+.+ +-++||.+||..-
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----------------------~k~VLVcaPSn~A 241 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----------------------KKRVLVCAPSNVA 241 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----------------------CCeEEEEcCchHH
Confidence 57789999999888544456899999999997765555555432 2489999999999
Q ss_pred HHHHHHHHH
Q 009003 277 ALQVTDHLK 285 (547)
Q Consensus 277 a~qv~~~l~ 285 (547)
+..+.+.+.
T Consensus 242 VdNiverl~ 250 (649)
T KOG1803|consen 242 VDNIVERLT 250 (649)
T ss_pred HHHHHHHhc
Confidence 988888654
No 172
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.89 E-value=6.1e-05 Score=79.45 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=66.3
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCe
Q 009003 186 LMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHL 265 (547)
Q Consensus 186 l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (547)
|-+.+...++..+..-|..|+.++| +..--||+||+|+|||..-.- |+.++.+. ...
T Consensus 399 LP~~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~-IVyhl~~~---------------------~~~ 455 (935)
T KOG1802|consen 399 LPRRFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ---------------------HAG 455 (935)
T ss_pred CchhhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHH-HHHHHHHh---------------------cCC
Confidence 3345556778889999999999998 567779999999999977444 33343322 245
Q ss_pred EEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEc
Q 009003 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVG 300 (547)
Q Consensus 266 ~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g 300 (547)
.+||++|+.-.+.|+.+.+.+. |++|+.+..
T Consensus 456 ~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~a 486 (935)
T KOG1802|consen 456 PVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCA 486 (935)
T ss_pred ceEEEcccchhHHHHHHHHHhc----CceEeeeeh
Confidence 7999999999999998888766 666666543
No 173
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.82 E-value=0.00019 Score=79.32 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=52.5
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+++.|..|+..++.+...++|.||+|+|||....- ++..+.. .+.++|+++||..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~-ii~~~~~----------------------~g~~VLv~a~sn~ 212 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVE-LIRQLVK----------------------RGLRVLVTAPSNI 212 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHH-HHHHHHH----------------------cCCCEEEEcCcHH
Confidence 4679999999999885446789999999999965333 3333322 1348999999999
Q ss_pred HHHHHHHHHHHh
Q 009003 276 LALQVTDHLKGV 287 (547)
Q Consensus 276 La~qv~~~l~~~ 287 (547)
.+.++.+.+...
T Consensus 213 Avd~l~e~l~~~ 224 (637)
T TIGR00376 213 AVDNLLERLALC 224 (637)
T ss_pred HHHHHHHHHHhC
Confidence 999998888764
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.79 E-value=0.00017 Score=70.67 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=106.8
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHh---------cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHh
Q 009003 177 WNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAH---------QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAK 247 (547)
Q Consensus 177 f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~---------~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 247 (547)
+..+.|+..++. .| .++..|.+++-.+.. ...-.++-..||.||.-...--|++..++.
T Consensus 23 ~y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------ 90 (303)
T PF13872_consen 23 TYRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------ 90 (303)
T ss_pred CcccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC------
Confidence 344566665432 33 478889888865532 133567888999998866555555555432
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH
Q 009003 248 MLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327 (547)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~ 327 (547)
+.|+|+|..+-.|-....+.|..++.. .+.+..+..- .. .....-.-.||++|...|..
T Consensus 91 ----------------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~---~~~~~~~~GvlF~TYs~L~~ 149 (303)
T PF13872_consen 91 ----------------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KY---GDIIRLKEGVLFSTYSTLIS 149 (303)
T ss_pred ----------------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-cc---CcCCCCCCCccchhHHHHHh
Confidence 347999999999999999999988543 3333333221 00 01112244699999999877
Q ss_pred HHhcCCCCcccC--------C-CccEEEEeccchhhhcCC--------hHHHHHHHHhCCCCCCCCCCCCcccccccccc
Q 009003 328 LMSGGEKHLVEL--------H-TLSFFVLDEADRMIENGH--------FRELQSIIDMLPMTNGSNKGQSEQTQNCVTVS 390 (547)
Q Consensus 328 ~l~~~~~~~~~l--------~-~l~~lViDEah~ll~~~~--------~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 390 (547)
.-.........| . .=.+||+||||.+-.... ...+..+.+.||.
T Consensus 150 ~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~------------------- 210 (303)
T PF13872_consen 150 ESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN------------------- 210 (303)
T ss_pred HHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-------------------
Confidence 643211111111 1 113799999999853221 2455666677762
Q ss_pred cccCCCcEEEEEeccCC
Q 009003 391 SLQRKKRQTLVFSATIA 407 (547)
Q Consensus 391 ~~~~~~~q~i~~SATl~ 407 (547)
-+++.+|||-.
T Consensus 211 ------ARvvY~SATga 221 (303)
T PF13872_consen 211 ------ARVVYASATGA 221 (303)
T ss_pred ------CcEEEeccccc
Confidence 36999999976
No 175
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.78 E-value=0.00014 Score=74.98 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=67.8
Q ss_pred cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcE
Q 009003 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~ 294 (547)
-++|.|..|||||+..+- ++..+. ....+.+++++++...|+..+...+.....
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~--------------------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQ--------------------NSEEGKKVLYLCGNHPLRNKLREQLAKKYN----- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhh--------------------ccccCCceEEEEecchHHHHHHHHHhhhcc-----
Confidence 478999999999976432 333330 012346799999999999988888875520
Q ss_pred EEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcC-------ChHHHHHHHH
Q 009003 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG-------HFRELQSIID 367 (547)
Q Consensus 295 v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~-------~~~~l~~i~~ 367 (547)
.......+..|..+...+. ........+++|||||||+|...+ ....+..+++
T Consensus 57 -----------------~~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~ 116 (352)
T PF09848_consen 57 -----------------PKLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIK 116 (352)
T ss_pred -----------------cchhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHh
Confidence 0112234444545443332 112346788999999999998632 2356666665
Q ss_pred h
Q 009003 368 M 368 (547)
Q Consensus 368 ~ 368 (547)
.
T Consensus 117 ~ 117 (352)
T PF09848_consen 117 R 117 (352)
T ss_pred c
Confidence 4
No 176
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.75 E-value=0.00042 Score=75.60 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHH
Q 009003 199 TPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278 (547)
Q Consensus 199 ~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 278 (547)
.++|+.|+..++ ..+-+++.|+.|+|||... ..++..+.... .....+++++++||---|.
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~-----------------~~~~~~~I~l~APTGkAA~ 207 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTV-ARLLLALVKQS-----------------PKQGKLRIALAAPTGKAAA 207 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc-----------------cccCCCcEEEECCcHHHHH
Confidence 379999998888 5788999999999999552 22333332110 0111357999999999888
Q ss_pred HHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC---cccCCCccEEEEeccchhhh
Q 009003 279 QVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH---LVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 279 qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~---~~~l~~l~~lViDEah~ll~ 355 (547)
++.+.+......++.. . . +.....+-..|-.+|+......... ....-.+++||||||=++
T Consensus 208 rL~e~~~~~~~~l~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-- 271 (586)
T TIGR01447 208 RLAESLRKAVKNLAAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-- 271 (586)
T ss_pred HHHHHHHhhhcccccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC--
Confidence 8887776543322210 0 0 0111123355655555432211000 012335799999999855
Q ss_pred cCChHHHHHHHHhCC
Q 009003 356 NGHFRELQSIIDMLP 370 (547)
Q Consensus 356 ~~~~~~l~~i~~~l~ 370 (547)
-...+..+++.++
T Consensus 272 --d~~l~~~ll~al~ 284 (586)
T TIGR01447 272 --DLPLMAKLLKALP 284 (586)
T ss_pred --CHHHHHHHHHhcC
Confidence 2456677777776
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.72 E-value=0.00073 Score=65.20 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=35.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.++...+..|...+..+. ++..+++.||+|+|||+..+..+++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 55 SPILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred ccccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 455567888999988775 577889999999999987666666555
No 178
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.71 E-value=0.00041 Score=75.92 Aligned_cols=134 Identities=23% Similarity=0.290 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHH
Q 009003 199 TPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278 (547)
Q Consensus 199 ~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 278 (547)
.++|+.|+-..+ ..+-++|.|++|+|||... .-++..+.+. ......++++++||..-|.
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v-~~ll~~l~~~------------------~~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTV-AKLLAALIQL------------------ADGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHH-HHHHHHHHHh------------------cCCCCcEEEEECCcHHHHH
Confidence 589999998887 5788999999999999552 2222322211 1112357899999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC---CcccCCCccEEEEeccchhhh
Q 009003 279 QVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK---HLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 279 qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~---~~~~l~~l~~lViDEah~ll~ 355 (547)
++.+.+......+++.. . .......-..|-.+|+........ .....-.+++||||||-++
T Consensus 214 rL~e~~~~~~~~~~~~~----------~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-- 277 (615)
T PRK10875 214 RLTESLGKALRQLPLTD----------E----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-- 277 (615)
T ss_pred HHHHHHHhhhhccccch----------h----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc--
Confidence 98887765543332110 0 001111223455555433211100 0112335689999999854
Q ss_pred cCChHHHHHHHHhCC
Q 009003 356 NGHFRELQSIIDMLP 370 (547)
Q Consensus 356 ~~~~~~l~~i~~~l~ 370 (547)
-...+..+++.++
T Consensus 278 --d~~lm~~ll~al~ 290 (615)
T PRK10875 278 --DLPMMARLIDALP 290 (615)
T ss_pred --cHHHHHHHHHhcc
Confidence 3566677787777
No 179
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.68 E-value=0.00025 Score=67.03 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHHHHh--cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 197 EPTPIQKACIPAAAH--QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~--~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
..++.|.+....++. .|.+.+.+.-+|.|||.+ ++|++..++..+ .--+.++||.
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg---------------------~~LvrviVpk- 79 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG---------------------SRLVRVIVPK- 79 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC---------------------CcEEEEEcCH-
Confidence 678999999988875 367999999999999966 788887765431 1246666665
Q ss_pred HHHHHHHHHHHHhhcC-CCcEEEEE--EcCCCHHH-----HHH---HhcCCCcEEEeChHHHHHHHhc-------CCCC-
Q 009003 275 ELALQVTDHLKGVAKG-INVRVVPI--VGGMSTEK-----QER---LLKARPEVVVGTPGRLWELMSG-------GEKH- 335 (547)
Q Consensus 275 ~La~qv~~~l~~~~~~-~~~~v~~~--~g~~~~~~-----~~~---~~~~~~dIlv~TP~~l~~~l~~-------~~~~- 335 (547)
.|..|.++.+.....+ ++-++..+ .-...... ... .....-.|+++||+.++.+.-. +...
T Consensus 80 ~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~ 159 (229)
T PF12340_consen 80 ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEE 159 (229)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHH
Confidence 7999999998854432 33333332 22222111 111 1223456999999998654211 1100
Q ss_pred ---c----ccCCCccEEEEeccchhhh
Q 009003 336 ---L----VELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 336 ---~----~~l~~l~~lViDEah~ll~ 355 (547)
. ..+.....=|+||+|.++.
T Consensus 160 ~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 160 ARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 0134455679999999875
No 180
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.67 E-value=0.0007 Score=76.00 Aligned_cols=67 Identities=30% Similarity=0.277 Sum_probs=46.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.++ .+++-|+.|+..++ .++-+++.|+.|+|||... -.++..+ ... .....+++++|
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l-~~i~~~~-~~~-------------------~~~~~v~l~Ap 376 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAI-QHKVVILTGGPGTGKTTIT-RAIIELA-EEL-------------------GGLLPVGLAAP 376 (720)
T ss_pred cCC-CCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHH-HHHHHHH-HHc-------------------CCCceEEEEeC
Confidence 444 78999999999987 5778999999999999542 2222322 110 01146888999
Q ss_pred CHHHHHHHHH
Q 009003 273 TRELALQVTD 282 (547)
Q Consensus 273 tr~La~qv~~ 282 (547)
|-..|.++.+
T Consensus 377 Tg~AA~~L~e 386 (720)
T TIGR01448 377 TGRAAKRLGE 386 (720)
T ss_pred chHHHHHHHH
Confidence 9888775543
No 181
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.67 E-value=0.00035 Score=76.20 Aligned_cols=109 Identities=22% Similarity=0.332 Sum_probs=72.4
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH-----H
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK-----G 286 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~-----~ 286 (547)
.++-++|.+.||+|||.-+.--+|+.+..... .....+.+--|+|-.+.-+.+.+. .
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~------------------g~~~na~v~qprrisaisiaerva~er~e~ 453 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSN------------------GASFNAVVSQPRRISAISLAERVANERGEE 453 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccc------------------cccccceeccccccchHHHHHHHHHhhHHh
Confidence 46677899999999998888778877765422 122346667788755555444432 3
Q ss_pred hhcCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 287 VAKGINVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 287 ~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
.+.-+++++. +..... ..-.|++||-+.+++.+.++ +..+.++|+||.|..-
T Consensus 454 ~g~tvgy~vR----------f~Sa~prpyg~i~fctvgvllr~~e~g------lrg~sh~i~deiherd 506 (1282)
T KOG0921|consen 454 VGETCGYNVR----------FDSATPRPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHERD 506 (1282)
T ss_pred hccccccccc----------ccccccccccceeeeccchhhhhhhhc------ccccccccchhhhhhc
Confidence 3333444442 222111 22369999999999999765 5677899999999863
No 182
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.66 E-value=0.001 Score=73.04 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=55.3
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCC----CcEEEEEEcCCCHHHHHHH---hcCCCcEEEeChHHHHHHHhcCCCCc-
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGI----NVRVVPIVGGMSTEKQERL---LKARPEVVVGTPGRLWELMSGGEKHL- 336 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~----~~~v~~~~g~~~~~~~~~~---~~~~~dIlv~TP~~l~~~l~~~~~~~- 336 (547)
-+||||||. ..+..|+++|.++.... .+.|..+..-..+...... +...--|.|.-...+. .|..+....
T Consensus 729 ktaLvV~Pl-Nt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyR-nLa~gr~vk~ 806 (1567)
T KOG1015|consen 729 KTALVVCPL-NTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYR-NLAQGRNVKS 806 (1567)
T ss_pred ceEEEEcch-HHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHH-HHhcccchhh
Confidence 479999998 55677999999887643 3444444332232222222 2223346665555543 333221110
Q ss_pred ----------ccCCCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 337 ----------VELHTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 337 ----------~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
+.-..-++||+||+|.| .+--..+...+..+
T Consensus 807 rk~ke~f~k~lvdpGPD~vVCDE~HiL--KNeksa~Skam~~i 847 (1567)
T KOG1015|consen 807 RKLKEIFNKALVDPGPDFVVCDEGHIL--KNEKSAVSKAMNSI 847 (1567)
T ss_pred hHHHHHHHHhccCCCCCeEEecchhhh--ccchHHHHHHHHHH
Confidence 11233479999999977 44455555555554
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.56 E-value=0.00044 Score=54.00 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=39.6
Q ss_pred HHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHH
Q 009003 205 CIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 284 (547)
Q Consensus 205 ~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l 284 (547)
+|...+..+.-++|.||+|||||...+- ++..+...+ ... +-++||++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~-~i~~l~~~~-----------------~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAA-RIAELLAAR-----------------ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHH-HHHHHHHHh-----------------cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443443244455699999999966433 333333211 112 458999999999999998888
No 184
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.51 E-value=0.00014 Score=81.44 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=91.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+++|.-.-- +|| +--|+...||-|||++..+|+.-..+. |-.|-||+..--|
T Consensus 169 ~~yDVQliGgi-vLh--~G~IAEM~TGEGKTLvAtlp~yLnAL~-----------------------GkgVHvVTVNDYL 222 (1112)
T PRK12901 169 VHYDVQLIGGV-VLH--QGKIAEMATGEGKTLVATLPVYLNALT-----------------------GNGVHVVTVNDYL 222 (1112)
T ss_pred cccchHHhhhh-hhc--CCceeeecCCCCchhHHHHHHHHHHHc-----------------------CCCcEEEEechhh
Confidence 56777765542 333 445789999999999999998765543 2347777788899
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEc-CCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEeccc
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVG-GMSTEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLDEAD 351 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViDEah 351 (547)
|.+=.+++..+...+|+.+.++.. +..... +.-.-.+||.++|..-| .+.|... .........+.|.||||+|
T Consensus 223 A~RDaewmgply~fLGLsvg~i~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 223 AKRDSEWMGPLYEFHGLSVDCIDKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred hhccHHHHHHHHHHhCCceeecCCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 999999999999999999998865 444433 33335689999998776 3333221 0111225668899999999
Q ss_pred hhh
Q 009003 352 RMI 354 (547)
Q Consensus 352 ~ll 354 (547)
.+|
T Consensus 301 SIL 303 (1112)
T PRK12901 301 SVL 303 (1112)
T ss_pred hhh
Confidence 975
No 185
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.50 E-value=0.002 Score=68.84 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCcHHHHHHHHHH---HhcCCcEEEEccCCChhhHHHHHHHHHHHHHH
Q 009003 197 EPTPIQKACIPAA---AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEE 241 (547)
Q Consensus 197 ~~~~iQ~~~i~~~---l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~ 241 (547)
+|+.||.+.+..+ +..|+-.|+.+|||+|||+..+-.++.+|...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 7999999887664 45789889999999999998877777777544
No 186
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.48 E-value=0.002 Score=72.63 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
+++..+......++ .+++-|..|+..++..++-+++.|+.|+|||.. +-.+..++..
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~-------------------- 394 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA-------------------- 394 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh--------------------
Confidence 44444333333344 689999999999885456779999999999944 4333333221
Q ss_pred CCCeEEEEEccCHHHHHHHH
Q 009003 262 KGHLRALIITPTRELALQVT 281 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~ 281 (547)
.+.++++++||--.|..+.
T Consensus 395 -~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 395 -AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred -CCCeEEEEeCcHHHHHHHH
Confidence 2467999999977665543
No 187
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.37 E-value=0.00086 Score=73.15 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=50.4
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHH---HHh---
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHL---KGV--- 287 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l---~~~--- 287 (547)
-++=|...||+|||.+|+-.+...-.. .+-.+-||||||.+.-.-++..+ ..+
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~---------------------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k 133 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK---------------------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFK 133 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH---------------------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhh
Confidence 356688999999999997665543211 23357899999987544333222 222
Q ss_pred --hcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH
Q 009003 288 --AKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325 (547)
Q Consensus 288 --~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l 325 (547)
...+.+.. ++-........-...+.+.|++.|-..+
T Consensus 134 ~~Yent~~e~--~i~~~~~~~~~~~~~~~~~vLl~~~~Af 171 (985)
T COG3587 134 SEYENTRLES--YIYDEDIEKFKFKSNNKPCVLLIFVSAF 171 (985)
T ss_pred hhccCcceeE--EeechHHHHHhhccCCCceEEEEehhhh
Confidence 22233333 2222222233333445678888876554
No 188
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.36 E-value=0.00045 Score=71.44 Aligned_cols=124 Identities=11% Similarity=0.201 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHHH-----hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 198 PTPIQKACIPAAA-----HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 198 ~~~iQ~~~i~~~l-----~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+++-|+.++..++ ..+..+++.|+-|+||| |++-.+...+.. .+..+++++|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~~---------------------~~~~~~~~a~ 58 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLRS---------------------RGKKVLVTAP 58 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhcc---------------------ccceEEEecc
Confidence 5677888877662 25788999999999999 666555544322 2457999999
Q ss_pred CHHHHHHH--HHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEecc
Q 009003 273 TRELALQV--TDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 273 tr~La~qv--~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEa 350 (547)
|---|..+ ...+..+ +++.+. . ..... +.+.+. ......+..+++|||||+
T Consensus 59 tg~AA~~i~~G~T~hs~---f~i~~~----~-----------~~~~~--~~~~~~-------~~~~~~l~~~~~lIiDEi 111 (364)
T PF05970_consen 59 TGIAAFNIPGGRTIHSF---FGIPIN----N-----------NEKSQ--CKISKN-------SRLRERLRKADVLIIDEI 111 (364)
T ss_pred hHHHHHhccCCcchHHh---cCcccc----c-----------ccccc--cccccc-------chhhhhhhhheeeecccc
Confidence 97766655 2222221 111110 0 00000 011111 111244788899999999
Q ss_pred chhhhcCChHHHHHHHHhCCCC
Q 009003 351 DRMIENGHFRELQSIIDMLPMT 372 (547)
Q Consensus 351 h~ll~~~~~~~l~~i~~~l~~~ 372 (547)
=.+. ......+...++.+...
T Consensus 112 sm~~-~~~l~~i~~~lr~i~~~ 132 (364)
T PF05970_consen 112 SMVS-ADMLDAIDRRLRDIRKS 132 (364)
T ss_pred cchh-HHHHHHHHHhhhhhhcc
Confidence 8665 55666777766666543
No 189
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.27 E-value=0.0051 Score=71.12 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcC
Q 009003 181 RLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYA 260 (547)
Q Consensus 181 ~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~ 260 (547)
++++..+......++ .+++-|..++..+...++-+++.|+.|+|||.+ +-.+..+.+.
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~------------------- 423 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA------------------- 423 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH-------------------
Confidence 455555555544444 799999999998864566788999999999944 4333333222
Q ss_pred CCCCeEEEEEccCHHHHHHHH
Q 009003 261 PKGHLRALIITPTRELALQVT 281 (547)
Q Consensus 261 ~~~~~~~lil~Ptr~La~qv~ 281 (547)
.+.+++.++||---|..+.
T Consensus 424 --~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 424 --AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred --cCCeEEEEcCcHHHHHHHH
Confidence 2568999999977665543
No 190
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.26 E-value=0.0011 Score=73.20 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=88.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 009003 180 LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKY 259 (547)
Q Consensus 180 l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~ 259 (547)
..+.|..... -+..+..-|++|+-.++....-.+|.|-+|+|||..... ++..|..
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~------------------- 711 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA------------------- 711 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------------------
Confidence 3455555443 234678899999999886667789999999999965332 3333322
Q ss_pred CCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcC---------------CCHH--HHHHHhcCCCcEEEeCh
Q 009003 260 APKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGG---------------MSTE--KQERLLKARPEVVVGTP 322 (547)
Q Consensus 260 ~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~---------------~~~~--~~~~~~~~~~dIlv~TP 322 (547)
.+-++|..+-|...+..+.-.|..+ ++.+..+-.. ++.+ ..-..+.+.+.|+.||=
T Consensus 712 ---~gkkVLLtsyThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TC 784 (1100)
T KOG1805|consen 712 ---LGKKVLLTSYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTC 784 (1100)
T ss_pred ---cCCeEEEEehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEc
Confidence 1457999999988877776666654 3332222111 1111 11123445788999997
Q ss_pred HHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 323 GRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 323 ~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
..+-+.| +..+.+++.|||||-.++
T Consensus 785 lgi~~pl-------f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 785 LGINHPL-------FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred cCCCchh-------hhccccCEEEEccccccc
Confidence 6664444 556778999999999874
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.23 E-value=0.0021 Score=55.73 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=12.3
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
+++.+++.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 4567899999999999653
No 192
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.17 E-value=0.0041 Score=71.43 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=45.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|+ .+++-|.+++..++....-+++.|+.|+|||.. +-.+..+.+. .+.+++.++|
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~---------------------~G~~V~~~Ap 398 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA---------------------AGYEVRGAAL 398 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------------------cCCeEEEecC
Confidence 344 689999999999984344568999999999954 3333333221 2467999999
Q ss_pred CHHHHHHH
Q 009003 273 TRELALQV 280 (547)
Q Consensus 273 tr~La~qv 280 (547)
|--.|..+
T Consensus 399 TGkAA~~L 406 (988)
T PRK13889 399 SGIAAENL 406 (988)
T ss_pred cHHHHHHH
Confidence 97766544
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0052 Score=63.57 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChhhHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~ 231 (547)
+..++++||||+|||.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999997643
No 194
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.10 E-value=0.0012 Score=63.72 Aligned_cols=88 Identities=31% Similarity=0.461 Sum_probs=63.8
Q ss_pred CCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCC-CHHHHHHHhc-CCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGM-STEKQERLLK-ARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 261 ~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~-~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
..+.|.+|||+.+--=|..+++.++.+. ..+..|+.+++-. ...++...+. ..+.|.||||+||..++.++ .+.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~ 198 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALS 198 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCC
Confidence 4567899999998777777777777662 1123444444433 5556666666 47899999999999999665 578
Q ss_pred CCCccEEEEeccch
Q 009003 339 LHTLSFFVLDEADR 352 (547)
Q Consensus 339 l~~l~~lViDEah~ 352 (547)
++++.+||||=-|.
T Consensus 199 l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 199 LSNLKRIVLDWSYL 212 (252)
T ss_pred cccCeEEEEcCCcc
Confidence 99999999997553
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.01 E-value=0.0081 Score=60.01 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=46.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCc-EEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKD-VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~d-vli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
+|+..-.-.|.-|+..+++..-+ |.+.++-|||||+.++...|...+..+. .-++||.=
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~--------------------y~KiiVtR 283 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR--------------------YRKIIVTR 283 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh--------------------hceEEEec
Confidence 56766667888899888743323 4678999999999888888887766542 23677777
Q ss_pred cCHHHH
Q 009003 272 PTRELA 277 (547)
Q Consensus 272 Ptr~La 277 (547)
|+..+.
T Consensus 284 p~vpvG 289 (436)
T COG1875 284 PTVPVG 289 (436)
T ss_pred CCcCcc
Confidence 886653
No 196
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0035 Score=64.31 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCChhhHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~l 232 (547)
.+..++++||||+|||.....
T Consensus 136 ~g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467889999999999976443
No 197
>PRK08181 transposase; Validated
Probab=96.94 E-value=0.0061 Score=59.94 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=21.6
Q ss_pred cHHHHHHHH---HHHhcCCcEEEEccCCChhhHH
Q 009003 199 TPIQKACIP---AAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 199 ~~iQ~~~i~---~~l~~~~dvli~a~TGsGKT~~ 229 (547)
...|..++. .++..+.+++++||+|+|||..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHH
Confidence 344444442 2345788999999999999954
No 198
>PRK04296 thymidine kinase; Provisional
Probab=96.94 E-value=0.003 Score=58.95 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=14.3
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
|.-+++.||+|+|||...
T Consensus 2 g~i~litG~~GsGKTT~~ 19 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTEL 19 (190)
T ss_pred cEEEEEECCCCCHHHHHH
Confidence 445789999999999653
No 199
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.037 Score=56.85 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.4
Q ss_pred CcEEEEccCCChhhHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~l 232 (547)
+.++++||||+|||.....
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5788999999999966443
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.89 E-value=0.0028 Score=63.86 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHH
Q 009003 198 PTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELA 277 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La 277 (547)
+++-|.++|.. ....++|.|..|||||.+.+.-++..+... ....-++|+|++|+..|
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-------------------~~~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-------------------GVPPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-------------------SSTGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccc-------------------cCChHHheecccCHHHH
Confidence 47789998865 367999999999999987555444444221 12345699999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch
Q 009003 278 LQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 278 ~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ 352 (547)
..+...+........... ...............+.|+|-+.++..+-........+ .-.+-|+|+...
T Consensus 59 ~e~~~ri~~~l~~~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~-~~~~~i~~~~~~ 126 (315)
T PF00580_consen 59 QEMRERIRELLEEEQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI-DPNFEILDEEEQ 126 (315)
T ss_dssp HHHHHHHHHHHHHCCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS-HTTTEEECHHHH
T ss_pred HHHHHHHHHhcCcccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhc-cccceeecchhc
Confidence 999999988644321100 00001112222345688999988865442111001111 124677777773
No 201
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.0075 Score=63.59 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=30.9
Q ss_pred hcCCCcEEEeChHHHHHHHhcCCCCccc---CCCccEE-EEeccchhh
Q 009003 311 LKARPEVVVGTPGRLWELMSGGEKHLVE---LHTLSFF-VLDEADRMI 354 (547)
Q Consensus 311 ~~~~~dIlv~TP~~l~~~l~~~~~~~~~---l~~l~~l-ViDEah~ll 354 (547)
..+...|+++|...|...+-+.....+. |.+..+| +-||||+|-
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 3456889999999998877655444444 4444444 559999984
No 202
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0037 Score=69.26 Aligned_cols=133 Identities=22% Similarity=0.258 Sum_probs=94.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. +|..+|.-.--.+ ...-++...||-|||++..+|+.-..+ ++-.+.+|+.
T Consensus 77 lg~-~~~dVQliG~i~l---h~g~iaEM~TGEGKTL~atlp~ylnaL-----------------------~gkgVhvVTv 129 (822)
T COG0653 77 LGM-RHFDVQLLGGIVL---HLGDIAEMRTGEGKTLVATLPAYLNAL-----------------------AGKGVHVVTV 129 (822)
T ss_pred cCC-ChhhHHHhhhhhh---cCCceeeeecCCchHHHHHHHHHHHhc-----------------------CCCCcEEeee
Confidence 344 5566666554222 355678999999999999998754322 2335888888
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViD 348 (547)
.--||..-..++..+...+|+.++++..++.+....... .+||..+|-..| .+.+... ...-..+..+.+.|+|
T Consensus 130 NdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvD 207 (822)
T COG0653 130 NDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVD 207 (822)
T ss_pred hHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEc
Confidence 889999999999999999999999999998776554443 489999998877 2222110 0111225578899999
Q ss_pred ccchhh
Q 009003 349 EADRMI 354 (547)
Q Consensus 349 Eah~ll 354 (547)
|+|.++
T Consensus 208 EvDSIL 213 (822)
T COG0653 208 EVDSIL 213 (822)
T ss_pred chhhee
Confidence 999875
No 203
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.68 E-value=0.0036 Score=71.17 Aligned_cols=150 Identities=18% Similarity=0.085 Sum_probs=87.7
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI 291 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~ 291 (547)
.|.++++.-..|+|||.+-+...+..+.+...... ..... .........-+|||+|. ++..||+.++..++...
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~c---S~~~~--e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~ 446 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCC---SELVK--EGENLVETGATLIICPN-AILMQWFEEIHKHISSL 446 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhh---hHHHh--cccceeecCceEEECcH-HHHHHHHHHHHHhcccc
Confidence 46778888999999998865554444322111000 00000 01112223458999998 78899999999987754
Q ss_pred CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC--CCCccc-------------CCCcc--EEEEeccchhh
Q 009003 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG--EKHLVE-------------LHTLS--FFVLDEADRMI 354 (547)
Q Consensus 292 ~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~--~~~~~~-------------l~~l~--~lViDEah~ll 354 (547)
+.+....|=.........-...+|||++|...|...|... ...... |-.+. -|+||||..+-
T Consensus 447 -lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 447 -LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred -ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 5655544432211111122246899999999998776543 111111 22222 37999999764
Q ss_pred hcCChHHHHHHHHhCC
Q 009003 355 ENGHFRELQSIIDMLP 370 (547)
Q Consensus 355 ~~~~~~~l~~i~~~l~ 370 (547)
...+.+...+.+|+
T Consensus 526 --sssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 526 --SSSSAAAEMVRRLH 539 (1394)
T ss_pred --chHHHHHHHHHHhh
Confidence 36666677777776
No 204
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.66 E-value=0.022 Score=58.36 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=59.7
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
++.+.+.||||-|||...+=-+....+.. ...--+||.+-|--.+ .++.|+.++.-++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--------------------~~~kVaiITtDtYRIG--A~EQLk~Ya~im~ 260 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--------------------KKKKVAIITTDTYRIG--AVEQLKTYADIMG 260 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--------------------cCcceEEEEeccchhh--HHHHHHHHHHHhC
Confidence 78899999999999966432222222111 1112356666653221 1334555555455
Q ss_pred cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh-hcCChHHHHHHHHh
Q 009003 293 VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI-ENGHFRELQSIIDM 368 (547)
Q Consensus 293 ~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll-~~~~~~~l~~i~~~ 368 (547)
+.+ .+|-+|.-|...+ ..+.++++|.||=|-+=. +......+..++..
T Consensus 261 vp~---------------------~vv~~~~el~~ai-------~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 261 VPL---------------------EVVYSPKELAEAI-------EALRDCDVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred Cce---------------------EEecCHHHHHHHH-------HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 544 5666777777766 346777899999776431 11223444544443
No 205
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.65 E-value=0.15 Score=63.66 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 197 EPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
.+++-|..++..++.+ .+-+++.|+.|+|||.+ +-.+-.+.+. .+.++++++||..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~---------------------~G~~V~~lAPTgr 485 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE---------------------QGYEIQIITAGSL 485 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh---------------------cCCeEEEEeCCHH
Confidence 6889999999998854 35678999999999943 3333333322 2468999999988
Q ss_pred HHHHHHHHH
Q 009003 276 LALQVTDHL 284 (547)
Q Consensus 276 La~qv~~~l 284 (547)
-+.++.+..
T Consensus 486 AA~~L~e~~ 494 (1960)
T TIGR02760 486 SAQELRQKI 494 (1960)
T ss_pred HHHHHHHHh
Confidence 776665543
No 206
>PRK14974 cell division protein FtsY; Provisional
Probab=96.54 E-value=0.045 Score=55.59 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCccEEEEeccchhh-hcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 340 HTLSFFVLDEADRMI-ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 340 ~~l~~lViDEah~ll-~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
..+++||||.|.++. +......+..+.+.++ ...-+++++||..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------------------pd~~iLVl~a~~g 265 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------------------PDLVIFVGDALAG 265 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhC------------------------CceEEEeeccccc
Confidence 456899999999874 2344566666665554 3456788899875
No 207
>PRK06526 transposase; Provisional
Probab=96.51 E-value=0.0078 Score=58.81 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=17.5
Q ss_pred hcCCcEEEEccCCChhhHHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~ 231 (547)
..+.+++++||+|+|||....
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hcCceEEEEeCCCCchHHHHH
Confidence 467899999999999996533
No 208
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.41 E-value=0.002 Score=58.81 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=48.8
Q ss_pred EEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEE
Q 009003 217 IGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVV 296 (547)
Q Consensus 217 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~ 296 (547)
++.|+-|-|||.+..+.+...+.. ...+++|.+|+.+-+..+++.+..-....+++..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------------------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~ 58 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------------------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEE 58 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------------------EEEE-SS--S-HHHHHCC------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------------------cCceEEEecCCHHHHHHHHHHHHhhccccccccc
Confidence 578999999998766654433311 1257999999999888888877665555554431
Q ss_pred EEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHH
Q 009003 297 PIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366 (547)
Q Consensus 297 ~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~ 366 (547)
...... ........+..|-+..|..+... ....++||||||=.+- ...+..++
T Consensus 59 ~~~~~~---~~~~~~~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll 111 (177)
T PF05127_consen 59 KKKRIG---QIIKLRFNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLL 111 (177)
T ss_dssp -----------------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHH
T ss_pred cccccc---cccccccccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHH
Confidence 000000 00011112567888888876422 1234899999998773 45566665
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.36 E-value=0.05 Score=47.31 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.0
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999943
No 210
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.34 E-value=0.057 Score=56.26 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=30.8
Q ss_pred cCCCCCcHHHHHHHHH---HHhcCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 193 LQFKEPTPIQKACIPA---AAHQGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~---~l~~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
+.|....|-|.+-+-. .|..+...++..|+|+|||.+.+.-++..
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aY 59 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAY 59 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHH
Confidence 3455667777655443 34567789999999999998755444433
No 211
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.25 E-value=0.02 Score=63.23 Aligned_cols=115 Identities=26% Similarity=0.250 Sum_probs=71.0
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCc
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~ 293 (547)
.-.|+.-..|-|||...+.-++.+=.... + ..........||+||+ ++..||..++.+......+
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~-----------~---~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l 217 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSK-----------E---EDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKL 217 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCc-----------c---hhhccccCceeEecch-HHHHHHHHHHhccCCccce
Confidence 34678888999999875444333211110 0 0011233457888888 7888999999666555567
Q ss_pred EEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 294 ~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
.+.+++|.. ......+.+|||++||+.+.. ...+. -.+-.+|+||||.+-
T Consensus 218 ~v~v~~gr~----kd~~el~~~dVVltTy~il~~------~~l~~-i~w~Riildea~~ik 267 (674)
T KOG1001|consen 218 SIYVYHGRT----KDKSELNSYDVVLTTYDILKN------SPLVK-IKWLRIVLDEAHTIK 267 (674)
T ss_pred EEEEecccc----cccchhcCCceEEeeHHHhhc------ccccc-eeEEEEEeccccccC
Confidence 777777711 112223568899999999863 11111 233468999999985
No 212
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.23 E-value=0.015 Score=65.89 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+++-|++++.. ....++|.|..|||||.+...=+. ++... .+..+-++|+|+.|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~------------------~~v~p~~IL~lTFTnk 60 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIA-WLLSV------------------ENASPHSIMAVTFTNK 60 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHH-HHHHc------------------CCCCHHHeEeeeccHH
Confidence 3589999998843 456899999999999977433333 33221 1122347999999999
Q ss_pred HHHHHHHHHHHhh
Q 009003 276 LALQVTDHLKGVA 288 (547)
Q Consensus 276 La~qv~~~l~~~~ 288 (547)
.|..+.+.+..+.
T Consensus 61 AA~em~~Rl~~~~ 73 (715)
T TIGR01075 61 AAAEMRHRIGALL 73 (715)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 213
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.20 E-value=0.077 Score=47.35 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.7
Q ss_pred CCCccEEEEeccchhhh
Q 009003 339 LHTLSFFVLDEADRMIE 355 (547)
Q Consensus 339 l~~l~~lViDEah~ll~ 355 (547)
-....++||||++.+.+
T Consensus 83 ~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 83 RGGDDLIILDELTRLVR 99 (165)
T ss_pred CCCCEEEEEEcHHHHHH
Confidence 34678999999998864
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.19 E-value=0.053 Score=57.08 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhhHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~ 231 (547)
.++.+++.||||+|||....
T Consensus 220 ~~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36678999999999996543
No 215
>PRK06893 DNA replication initiation factor; Validated
Probab=96.18 E-value=0.013 Score=56.35 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=18.8
Q ss_pred CCccEEEEeccchhhhcC-ChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENG-HFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~-~~~~l~~i~~~l 369 (547)
.+.++|||||+|.+.... +...+..+++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~ 120 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRI 120 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHH
Confidence 466899999999885322 223445555444
No 216
>PRK05642 DNA replication initiation factor; Validated
Probab=96.18 E-value=0.013 Score=56.62 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=20.1
Q ss_pred CCccEEEEeccchhhhc-CChHHHHHHHHhCC
Q 009003 340 HTLSFFVLDEADRMIEN-GHFRELQSIIDMLP 370 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~-~~~~~l~~i~~~l~ 370 (547)
..+++||||++|.+... .+...+..+++.+.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~ 127 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLR 127 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHH
Confidence 35579999999987432 22345666666554
No 217
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.16 E-value=0.063 Score=51.26 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=20.0
Q ss_pred CCCccEEEEeccchhhhcC-ChHHHHHHHHhC
Q 009003 339 LHTLSFFVLDEADRMIENG-HFRELQSIIDML 369 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~-~~~~l~~i~~~l 369 (547)
+..+++||||.+|.+.... ....+..+++.+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~ 126 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRL 126 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHH
Confidence 3577999999999985321 234455555544
No 218
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.05 E-value=0.055 Score=59.86 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=112.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHhcCC-cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCe
Q 009003 187 MKSIYRLQFKEPTPIQKACIPAAAHQGK-DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHL 265 (547)
Q Consensus 187 ~~~l~~~~~~~~~~iQ~~~i~~~l~~~~-dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (547)
-..+.....+.+..-|.+.+..++..+. -+++.|.-|=|||.+..+.+.... .. .. ..
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~-------------------~~-~~ 262 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL-------------------AG-SV 262 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh-------------------cC-Cc
Confidence 3446666555555555666666665444 678899999999988776662221 11 01 46
Q ss_pred EEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEE
Q 009003 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFF 345 (547)
Q Consensus 266 ~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~l 345 (547)
+++|.+|+.+-+..++..+.+-...+|++-........ ...........|=+-+|.... .. -++|
T Consensus 263 ~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~------------~~-~Dll 327 (758)
T COG1444 263 RIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ------------EE-ADLL 327 (758)
T ss_pred eEEEeCCCHHHHHHHHHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc------------cc-CCEE
Confidence 89999999998888888877766666654322211100 000001112335555555432 11 5799
Q ss_pred EEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC--------CChhHHHHhh
Q 009003 346 VLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA--------LSADFRKKLK 417 (547)
Q Consensus 346 ViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--------~~~~~~~~l~ 417 (547)
|||||=.| ....+..++... +.++||.|+. .+..|.+++.
T Consensus 328 vVDEAAaI----plplL~~l~~~~----------------------------~rv~~sTTIhGYEGtGRgF~lkf~~~l~ 375 (758)
T COG1444 328 VVDEAAAI----PLPLLHKLLRRF----------------------------PRVLFSTTIHGYEGTGRGFSLKFLARLR 375 (758)
T ss_pred EEehhhcC----ChHHHHHHHhhc----------------------------CceEEEeeecccccCChHHHHHHHHHhc
Confidence 99999877 356666676544 4689999986 2334555554
Q ss_pred h--------cccccccccCCcchHHHHHHHh
Q 009003 418 H--------GSLKSKQSVNGLNSIETLSERA 440 (547)
Q Consensus 418 ~--------~~~~~~~~~~~~~~i~~l~~~~ 440 (547)
. ..+..++....-+.++......
T Consensus 376 ~~~~~~~~~~~l~ePIRya~gDPiE~wl~d~ 406 (758)
T COG1444 376 KQRDTTLHELELEEPIRYAPGDPIEKWLYDA 406 (758)
T ss_pred ccccceEEEEeccCCcccCCCCcHHHHHHHh
Confidence 3 3344566666777788877664
No 219
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.34 Score=51.84 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCChhhHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~ 230 (547)
..|+.++++||||+|||...
T Consensus 348 ~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35778899999999999654
No 220
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.99 E-value=0.028 Score=60.43 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHh----c----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 200 PIQKACIPAAAH----Q----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 200 ~iQ~~~i~~~l~----~----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
|+|.-.+-.++- . .+.+++.-|=|.|||......++..++- .+..+..+++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~-------------------~g~~~~~i~~~A 61 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL-------------------DGEPGAEIYCAA 61 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc-------------------CCccCceEEEEe
Confidence 577777766651 1 2357888899999996655444444421 133467899999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEecc
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEa 350 (547)
++++-|..+++.+..+....+.-.... . ...+. ..-.|.....+.++..+.... ...+=.+..++|+||+
T Consensus 62 ~~~~QA~~~f~~~~~~i~~~~~l~~~~-~-------~~~~~~~~~~i~~~~~~s~~~~~s~~~-~~~dG~~~~~~i~DE~ 132 (477)
T PF03354_consen 62 NTRDQAKIVFDEAKKMIEASPELRKRK-K-------PKIIKSNKKEIEFPKTGSFFKALSSDA-DSLDGLNPSLAIFDEL 132 (477)
T ss_pred CCHHHHHHHHHHHHHHHHhChhhccch-h-------hhhhhhhceEEEEcCCCcEEEEEecCC-CCccCCCCceEEEeCC
Confidence 999999999999998866432111000 0 00001 112233333233333333221 2223335689999999
Q ss_pred chhhhcCChHHHHH
Q 009003 351 DRMIENGHFRELQS 364 (547)
Q Consensus 351 h~ll~~~~~~~l~~ 364 (547)
|.+-+...+..+..
T Consensus 133 h~~~~~~~~~~l~~ 146 (477)
T PF03354_consen 133 HAHKDDELYDALES 146 (477)
T ss_pred CCCCCHHHHHHHHh
Confidence 98864333333333
No 221
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.98 E-value=0.43 Score=46.97 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCChhhHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~l 232 (547)
.+..+++++++|+|||..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 457889999999999976544
No 222
>PRK12377 putative replication protein; Provisional
Probab=95.93 E-value=0.074 Score=51.69 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...+++.|++|+|||..
T Consensus 101 ~~~l~l~G~~GtGKThL 117 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL 117 (248)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999944
No 223
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.88 E-value=0.045 Score=58.43 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..++++||+|+|||..
T Consensus 149 ~~l~l~G~~G~GKThL 164 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL 164 (450)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5689999999999954
No 224
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.86 E-value=0.25 Score=55.61 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=18.4
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
..+.+|||||+|.|... ....+..+++.
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 34568999999999743 23445555543
No 225
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.83 E-value=0.027 Score=63.78 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+++-|++++.. ....++|.|..|||||.+...=+. ++... .+..+-++|+|+-|+.
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria-~Li~~------------------~~v~p~~IL~lTFT~k 65 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIA-WLMQV------------------ENASPYSIMAVTFTNK 65 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHH-HHHHc------------------CCCChhHeEeeeccHH
Confidence 3589999999853 356899999999999976433333 22211 1122347999999999
Q ss_pred HHHHHHHHHHHhh
Q 009003 276 LALQVTDHLKGVA 288 (547)
Q Consensus 276 La~qv~~~l~~~~ 288 (547)
.|..+.+.+..+.
T Consensus 66 AA~Em~~Rl~~~~ 78 (721)
T PRK11773 66 AAAEMRHRIEQLL 78 (721)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 226
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.83 E-value=0.072 Score=56.65 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=19.3
Q ss_pred CCCccEEEEeccchhhhc-CChHHHHHHHHhC
Q 009003 339 LHTLSFFVLDEADRMIEN-GHFRELQSIIDML 369 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~-~~~~~l~~i~~~l 369 (547)
+.++++|||||+|.+... .....+..+++.+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~ 235 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNF 235 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHH
Confidence 346789999999987421 1234455555544
No 227
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.82 E-value=0.1 Score=56.80 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=81.4
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI- 291 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~- 291 (547)
.+-.+++.|=-.|||+... +++..+... ..+.++++++|.+..+..+++++..+....
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s--------------------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f 312 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT--------------------FRGIKIGYTAHIRKATEPVFEEIGARLRQWF 312 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh--------------------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhc
Confidence 4567889999999997654 565554332 346799999999999999999999876532
Q ss_pred -CcEEEEEEcCCCHHHHHHHhcCC--CcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 292 -NVRVVPIVGGMSTEKQERLLKAR--PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 292 -~~~v~~~~g~~~~~~~~~~~~~~--~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
+-.+..+.| ... --.+.++ +.|.++|- ...+...=..+++||||||+.+-+ +.+..++-.
T Consensus 313 ~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa---------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~ 375 (738)
T PHA03368 313 GASRVDHVKG-ETI---SFSFPDGSRSTIVFASS---------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGF 375 (738)
T ss_pred chhheeeecC-cEE---EEEecCCCccEEEEEec---------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHH
Confidence 111111111 100 0011112 24555431 012223344789999999998853 455555544
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 369 LPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 369 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
++. ...++|++|.|-.
T Consensus 376 l~~-----------------------~n~k~I~ISS~Ns 391 (738)
T PHA03368 376 LNQ-----------------------TNCKIIFVSSTNT 391 (738)
T ss_pred Hhc-----------------------cCccEEEEecCCC
Confidence 432 3567888888843
No 228
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.82 E-value=0.029 Score=54.89 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=24.5
Q ss_pred ccCCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 337 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 337 ~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
...+.+.++|+||||.|. ..-|..+.+.++..+
T Consensus 125 ~~~~~fKiiIlDEcdsmt-sdaq~aLrr~mE~~s 157 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMT-SDAQAALRRTMEDFS 157 (346)
T ss_pred CCCCcceEEEEechhhhh-HHHHHHHHHHHhccc
Confidence 346677999999999997 345667777776654
No 229
>PRK08116 hypothetical protein; Validated
Probab=95.80 E-value=0.089 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=17.2
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
..+++.|++|+|||.... .+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l 138 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANEL 138 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHH
Confidence 459999999999995533 344544
No 230
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.78 E-value=0.03 Score=48.28 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 568999999999999553
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.036 Score=54.20 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=33.4
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 285 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~ 285 (547)
.++.++++.|++|+|||..... +.+.+.+. + .-++++++.+|+.++...+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~A-i~~~l~~~----------------------g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIA-IGNELLKA----------------------G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHH-HHHHHHHc----------------------C-CeEEEEEHHHHHHHHHHHHh
Confidence 3678999999999999955332 33333321 2 34555677788877766554
No 232
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.74 E-value=0.05 Score=52.23 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++|++|+|||..
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999943
No 233
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.71 E-value=0.035 Score=56.04 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEE
Q 009003 190 IYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALI 269 (547)
Q Consensus 190 l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 269 (547)
+...|. +++.|...+..++..+.++||+|+||||||.. +-.++..+.. ....-++++
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~--------------------~~~~~rivt 179 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVA--------------------SAPEDRLVI 179 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhc--------------------CCCCceEEE
Confidence 444444 66788888888887888999999999999954 2334444321 112347788
Q ss_pred EccCHHHH
Q 009003 270 ITPTRELA 277 (547)
Q Consensus 270 l~Ptr~La 277 (547)
+=.+.||.
T Consensus 180 iEd~~El~ 187 (323)
T PRK13833 180 LEDTAEIQ 187 (323)
T ss_pred ecCCcccc
Confidence 88888874
No 234
>PHA02533 17 large terminase protein; Provisional
Probab=95.66 E-value=0.16 Score=54.99 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|.|+|...+..+. .++-.++..+=..|||.+.+.-++..+.. ..+..+++++|++.-
T Consensus 59 ~L~p~Q~~i~~~~~-~~R~~ii~~aRq~GKStl~a~~al~~a~~---------------------~~~~~v~i~A~~~~Q 116 (534)
T PHA02533 59 QMRDYQKDMLKIMH-KNRFNACNLSRQLGKTTVVAIFLLHYVCF---------------------NKDKNVGILAHKASM 116 (534)
T ss_pred CCcHHHHHHHHHHh-cCeEEEEEEcCcCChHHHHHHHHHHHHHh---------------------CCCCEEEEEeCCHHH
Confidence 68899999987764 45666788888899997765444433321 124589999999999
Q ss_pred HHHHHHHHHHhhcCCCc--EEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 277 ALQVTDHLKGVAKGINV--RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~--~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
|..+++.++.+....+- +....... ...-.+.+++.|.+.|-.. ....=.++.++||||+|.+-
T Consensus 117 A~~vF~~ik~~ie~~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~----------~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 117 AAEVLDRTKQAIELLPDFLQPGIVEWN----KGSIELENGSKIGAYASSP----------DAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred HHHHHHHHHHHHHhCHHHhhcceeecC----ccEEEeCCCCEEEEEeCCC----------CccCCCCCceEEEeccccCC
Confidence 99999988866543321 11000000 0001123455555444211 11122356789999999764
No 235
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.64 E-value=0.047 Score=60.96 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=52.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
..-..+++-|+.++-. ....++|.|..|||||.+.+.-+ .++... ....+-++|+|+.
T Consensus 192 ~e~~~L~~~Q~~av~~---~~~~~lV~agaGSGKT~vl~~r~-ayLl~~------------------~~~~~~~IL~ltf 249 (684)
T PRK11054 192 VESSPLNPSQARAVVN---GEDSLLVLAGAGSGKTSVLVARA-GWLLAR------------------GQAQPEQILLLAF 249 (684)
T ss_pred ccCCCCCHHHHHHHhC---CCCCeEEEEeCCCCHHHHHHHHH-HHHHHh------------------CCCCHHHeEEEec
Confidence 3335799999999842 45678999999999997643333 333221 1122347999999
Q ss_pred CHHHHHHHHHHHHHhhc
Q 009003 273 TRELALQVTDHLKGVAK 289 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~ 289 (547)
|+..|..+.+.+.....
T Consensus 250 t~~AA~em~eRL~~~lg 266 (684)
T PRK11054 250 GRQAAEEMDERIRERLG 266 (684)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 99999999988876543
No 236
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.63 E-value=0.035 Score=56.05 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=45.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeE
Q 009003 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLR 266 (547)
Q Consensus 187 ~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (547)
+..+...|+ +++.|...+..++..+.+++++|+||||||. ++-.++..+.. .....+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~--------------------~~~~~r 180 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVI--------------------QDPTER 180 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhh--------------------cCCCce
Confidence 344445554 5678888888777788999999999999993 33444443311 112347
Q ss_pred EEEEccCHHHH
Q 009003 267 ALIITPTRELA 277 (547)
Q Consensus 267 ~lil~Ptr~La 277 (547)
+++|-.+.||.
T Consensus 181 ivtIEd~~El~ 191 (319)
T PRK13894 181 VFIIEDTGEIQ 191 (319)
T ss_pred EEEEcCCCccc
Confidence 88888888763
No 237
>PRK08727 hypothetical protein; Validated
Probab=95.62 E-value=0.041 Score=53.11 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.7
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.-++++|++|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4599999999999944
No 238
>PRK06921 hypothetical protein; Provisional
Probab=95.60 E-value=0.056 Score=53.22 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..+++.|++|+|||..
T Consensus 116 ~~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 367899999999999944
No 239
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.51 E-value=0.03 Score=62.73 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.+++-|++++.. ....++|.|..|||||.+...-+...+... +..+-++|+|+.|+..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-------------------~v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-------------------GYQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-------------------CCCHHHeeeEechHHH
Confidence 478899998853 356888999999999977444443333211 1123469999999999
Q ss_pred HHHHHHHHHHhh
Q 009003 277 ALQVTDHLKGVA 288 (547)
Q Consensus 277 a~qv~~~l~~~~ 288 (547)
|..+.+.+..+.
T Consensus 60 A~em~~Rl~~~l 71 (672)
T PRK10919 60 AREMKERVAQTL 71 (672)
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
No 240
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.49 E-value=0.07 Score=56.11 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.7
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..+++.|++|+|||..
T Consensus 137 n~l~l~G~~G~GKThL 152 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL 152 (405)
T ss_pred CeEEEECCCCCcHHHH
Confidence 4689999999999954
No 241
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.31 Score=51.04 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCChhhHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~ 231 (547)
.|.-+.++||||+|||....
T Consensus 190 ~g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999996644
No 242
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.48 E-value=0.049 Score=56.99 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEccCCChhhHHH
Q 009003 198 PTPIQKACIPAAAHQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~ 230 (547)
+-......+..+. .+++++++||+|+|||...
T Consensus 180 ~e~~le~l~~~L~-~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLT-IKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHh-cCCCEEEECCCCCCHHHHH
Confidence 3444455555554 7899999999999999553
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.47 E-value=0.11 Score=47.94 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=30.4
Q ss_pred EEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHh
Q 009003 216 VIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGV 287 (547)
Q Consensus 216 vli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~ 287 (547)
+++.||+|+|||...+--+...+ + .+.+++|++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~----------------------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A----------------------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H----------------------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999965332222222 1 1346777754 46677777777665
No 244
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.47 E-value=0.077 Score=59.68 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHH
Q 009003 198 PTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELA 277 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La 277 (547)
+++-|.+++.. ....++|.|..|||||.+.+--+...+.. .+..+.++|+|+.|+..|
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~-------------------~~~~p~~IL~vTFt~~Aa 59 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQN-------------------CGYKARNIAAVTFTNKAA 59 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHh-------------------cCCCHHHeEEEeccHHHH
Confidence 68889998743 45789999999999997744444433311 112234799999999999
Q ss_pred HHHHHHHHHhhc
Q 009003 278 LQVTDHLKGVAK 289 (547)
Q Consensus 278 ~qv~~~l~~~~~ 289 (547)
.++.+.+.....
T Consensus 60 ~em~~Rl~~~l~ 71 (664)
T TIGR01074 60 REMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHhC
Confidence 999999987653
No 245
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.41 E-value=0.19 Score=61.37 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 197 EPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
.+++.|..|+..++.. .+-++|.|..|+|||.. +-.+..++... ....+.+++.++||--
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~--l~~v~~~~~~l-----------------~~~~~~~V~glAPTgr 1027 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ--FRAVMSAVNTL-----------------PESERPRVVGLGPTHR 1027 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH--HHHHHHHHHHh-----------------hcccCceEEEECCcHH
Confidence 6899999999999853 35788999999999944 33322222210 1123457889999987
Q ss_pred HHHHHH
Q 009003 276 LALQVT 281 (547)
Q Consensus 276 La~qv~ 281 (547)
-|.++.
T Consensus 1028 AAk~L~ 1033 (1747)
T PRK13709 1028 AVGEMR 1033 (1747)
T ss_pred HHHHHH
Confidence 776543
No 246
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.37 E-value=0.056 Score=53.78 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.4
Q ss_pred CCcEEEEccCCChhhHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~ 231 (547)
++.++++||||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999996543
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.37 E-value=0.18 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.2
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
..++++|++|+|||.... .+.+.+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHH
Confidence 478999999999995533 334444
No 248
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.36 E-value=0.048 Score=52.14 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..+++.||+|+|||..
T Consensus 37 ~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999954
No 249
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.28 E-value=0.042 Score=53.13 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..++++||+|+|||..
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999944
No 250
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.18 E-value=0.15 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=16.6
Q ss_pred HHhcCC--cEEEEccCCChhhHHH
Q 009003 209 AAHQGK--DVIGAAETGSGKTLAF 230 (547)
Q Consensus 209 ~l~~~~--dvli~a~TGsGKT~~~ 230 (547)
++..++ .+++.||+|+|||...
T Consensus 30 ~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 30 AVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHhCCCCceEEEECCCCCCHHHHH
Confidence 333455 7999999999999553
No 251
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.11 Score=53.29 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhhHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~ 231 (547)
.++.++++||||+|||....
T Consensus 205 ~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678899999999996543
No 252
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.085 Score=58.88 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChhhHHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~l 232 (547)
++-++++||||+|||.+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45678999999999966443
No 253
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.12 E-value=0.033 Score=54.41 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=34.3
Q ss_pred ccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHH
Q 009003 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEE 241 (547)
Q Consensus 170 ~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~ 241 (547)
+|..+.+|.+|++++.+.+ +.. ....=|||.||||||||.. +..++.++.+.
T Consensus 101 Ip~~i~~~e~LglP~i~~~-~~~------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRE-LAE------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHH-HHh------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 4566667777777666543 111 1344678999999999955 56677777544
No 254
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.08 E-value=0.065 Score=56.17 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=64.3
Q ss_pred cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH-HHHHHHHHHHHhhcCCCc
Q 009003 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE-LALQVTDHLKGVAKGINV 293 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~-La~qv~~~l~~~~~~~~~ 293 (547)
-.+++|..|||||.+.++-++..+... ..+.++||+-||.. |..-++..+.......++
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--------------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--------------------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--------------------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 467899999999988887777766442 12468999999986 667778888776655554
Q ss_pred EEEEEEcCCCHHHHHHHhcC-CCcEEEeCh-HHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 294 RVVPIVGGMSTEKQERLLKA-RPEVVVGTP-GRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 294 ~v~~~~g~~~~~~~~~~~~~-~~dIlv~TP-~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
....-...... .-.+.+ +..|++..- ... ........+.++.+|||..+.
T Consensus 63 ~~~~~~~~~~~---~i~~~~~g~~i~f~g~~d~~--------~~ik~~~~~~~~~idEa~~~~ 114 (396)
T TIGR01547 63 NYEFKKSKSSM---EIKILNTGKKFIFKGLNDKP--------NKLKSGAGIAIIWFEEASQLT 114 (396)
T ss_pred hhheeecCCcc---EEEecCCCeEEEeecccCCh--------hHhhCcceeeeehhhhhhhcC
Confidence 31111111000 000112 344555433 111 111223446899999999884
No 255
>PF13173 AAA_14: AAA domain
Probab=95.07 E-value=0.21 Score=43.10 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=20.5
Q ss_pred CccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 341 TLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 341 ~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
.-.+|+|||+|.+ .++...+..+.+.-
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc
Confidence 3468999999998 45777777777653
No 256
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.11 Score=59.03 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
...++++||||||+|.. .-...|.++++..+
T Consensus 118 ~~~~KV~IIDEad~lt~-~a~NaLLK~LEEpP 148 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP-QGFNALLKIVEEPP 148 (824)
T ss_pred cCCceEEEEechhhcCH-HHHHHHHHHHhCCC
Confidence 35678999999999963 33445555555543
No 257
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=95.00 E-value=0.04 Score=42.89 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.6
Q ss_pred HHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 504 SLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 504 ~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++|+..|+.+..+||+|+..+|..+++.|.++...
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~ 35 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR 35 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce
Confidence 46888999999999999999999999999997653
No 258
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=0.18 Score=51.28 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHhcCC---cEEEEccCCChhhHH
Q 009003 198 PTPIQKACIPAAAHQGK---DVIGAAETGSGKTLA 229 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~---dvli~a~TGsGKT~~ 229 (547)
.+|||...+..++..|+ -+|++||.|.|||..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~ 38 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL 38 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH
Confidence 47899999988886543 578999999999954
No 259
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.92 E-value=0.14 Score=53.46 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.++++.||+|+|||..
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999965
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.84 E-value=0.12 Score=52.40 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.++++.|+||+|||..
T Consensus 182 ~~~~Lll~G~~GtGKThL 199 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL 199 (329)
T ss_pred cCCcEEEECCCCCcHHHH
Confidence 458999999999999954
No 261
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.84 E-value=0.075 Score=53.27 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=44.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeE
Q 009003 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLR 266 (547)
Q Consensus 187 ~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (547)
+..+...|. +++-|...+..++..+.+++++|+||||||.. +-.++..+.. ....-+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~--------------------~~~~~r 164 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK--------------------NDPTDR 164 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc--------------------cCCCce
Confidence 344444553 55667777777776788999999999999954 2334444311 012347
Q ss_pred EEEEccCHHHH
Q 009003 267 ALIITPTRELA 277 (547)
Q Consensus 267 ~lil~Ptr~La 277 (547)
++++--+.||.
T Consensus 165 i~tiEd~~El~ 175 (299)
T TIGR02782 165 VVIIEDTRELQ 175 (299)
T ss_pred EEEECCchhhc
Confidence 88888888874
No 262
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.77 E-value=0.19 Score=53.37 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..++++||+|+|||..
T Consensus 131 n~l~lyG~~G~GKTHL 146 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_pred CeEEEEcCCCCcHHHH
Confidence 4699999999999954
No 263
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.76 E-value=0.13 Score=48.17 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=28.6
Q ss_pred CCccEEEEeccchhh-hcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 340 HTLSFFVLDEADRMI-ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 340 ~~l~~lViDEah~ll-~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
+++++|+||=+-+.. +.....++..++..+. ...-.+++|||..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~------------------------~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALN------------------------PDEVHLVLSATMG 126 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS------------------------SSEEEEEEEGGGG
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcC------------------------CccceEEEecccC
Confidence 457899999887653 1223456666666654 3456788999987
No 264
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.75 E-value=0.27 Score=59.30 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHH--HHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAF--GLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~--~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.+++-|+.|+..++.. ++-++|.|..|+|||... ++-++..+. ...+.+++.++||
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~---------------------e~~g~~V~glAPT 893 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP---------------------ESERPRVVGLGPT 893 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh---------------------hccCceEEEEech
Confidence 7899999999988842 467899999999999542 122222211 1234678899999
Q ss_pred HHHHHHHH
Q 009003 274 RELALQVT 281 (547)
Q Consensus 274 r~La~qv~ 281 (547)
-.-+.++.
T Consensus 894 gkAa~~L~ 901 (1623)
T PRK14712 894 HRAVGEMR 901 (1623)
T ss_pred HHHHHHHH
Confidence 87776653
No 265
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.72 E-value=0.011 Score=51.95 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.0
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
+||+.||+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999943
No 266
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.25 Score=50.95 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=19.2
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
...-+||+||+|.|..... ..+..|++.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 3445899999999986543 555555544
No 267
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.65 E-value=0.22 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=17.5
Q ss_pred HHHhcC--CcEEEEccCCChhhHHHH
Q 009003 208 AAAHQG--KDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 208 ~~l~~~--~dvli~a~TGsGKT~~~~ 231 (547)
.++..+ .++|+.||+|+|||..+-
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLAR 66 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHH
Confidence 344433 489999999999995543
No 268
>PRK09183 transposase/IS protein; Provisional
Probab=94.64 E-value=0.23 Score=48.78 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCChhhHHH
Q 009003 210 AHQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 210 l~~~~dvli~a~TGsGKT~~~ 230 (547)
+..+.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 346889999999999999543
No 269
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.58 E-value=0.19 Score=49.42 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
..++++.||+|+|||...
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 357899999999999553
No 270
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.56 E-value=0.13 Score=54.62 Aligned_cols=30 Identities=10% Similarity=0.260 Sum_probs=19.1
Q ss_pred CCccEEEEeccchhhhcC-ChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENG-HFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~-~~~~l~~i~~~l 369 (547)
.++++|||||+|.+.... ....+..+++.+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l 231 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSL 231 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHH
Confidence 467899999999885322 234455555443
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.56 E-value=0.24 Score=50.11 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=18.2
Q ss_pred CccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 341 TLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 341 ~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
..++|||||+|.+........+..++...
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~ 128 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAY 128 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhc
Confidence 45799999999883222334455555544
No 272
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.54 E-value=0.072 Score=52.65 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=32.3
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 285 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~ 285 (547)
.+++++|+||.|||.. +.++.+.... .. .......|-++|-+|...-....+..+-
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~---------~~--d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPP---------QS--DEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCC---------CC--CCCCccccEEEEecCCCCChHHHHHHHH
Confidence 5899999999999953 3444333210 00 0011123666777787765555565554
No 273
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.51 E-value=0.21 Score=54.56 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=20.1
Q ss_pred CCCccEEEEeccchhhhcCC-hHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGH-FRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~-~~~l~~i~~~l~ 370 (547)
+.++++||||++|.+..... ...+..+++.+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~ 407 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH 407 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH
Confidence 34578999999998853222 344555555543
No 274
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.28 Score=54.49 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=19.5
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
..++++||||+|.|... -+..+.+++..-
T Consensus 118 gr~KVIIIDEah~LT~~-A~NALLKtLEEP 146 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-AFNAMLKTLEEP 146 (830)
T ss_pred CCceEEEEeChhhCCHH-HHHHHHHHHHhc
Confidence 45789999999988642 344455555543
No 275
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.40 E-value=0.16 Score=54.19 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=44.7
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhc
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAK 289 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~ 289 (547)
.+.-++|+|..|||||.+.+.-+...+|..|. +-..+ .+||+.|.+-++.-+.+.|-.++.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~----------------~l~~k-~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRG----------------PLQAK-PVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhcccc----------------ccccC-ceEEEcCcHHHHHHHHHhchhhcc
Confidence 45678999999999998866555555554431 11112 399999999999999999888854
No 276
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.40 E-value=0.39 Score=52.62 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHHh--cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 197 EPTPIQKACIPAAAH--QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~--~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
-|+|.=.+-|..++. ..+-.++.+|=|.|||.+..+.++..+ . ..+.+++|++|..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La-~---------------------f~Gi~IlvTAH~~ 226 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMI-S---------------------FLEIDIVVQAQRK 226 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHH-H---------------------hcCCeEEEECCCh
Confidence 445555555555543 245668889999999977554444322 1 1246899999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 009003 275 ELALQVTDHLKGVAKGI 291 (547)
Q Consensus 275 ~La~qv~~~l~~~~~~~ 291 (547)
..+.++++.+.......
T Consensus 227 ~ts~evF~rv~~~le~l 243 (752)
T PHA03333 227 TMCLTLYNRVETVVHAY 243 (752)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 99999999988877633
No 277
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.36 E-value=0.47 Score=46.80 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
.|.-+++.|++|+|||...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~ 47 (271)
T cd01122 29 KGELIILTAGTGVGKTTFL 47 (271)
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 5788999999999999543
No 278
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.29 E-value=0.49 Score=40.51 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=13.3
Q ss_pred ccEEEEeccchhhhcC
Q 009003 342 LSFFVLDEADRMIENG 357 (547)
Q Consensus 342 l~~lViDEah~ll~~~ 357 (547)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999998554
No 279
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.11 Score=54.98 Aligned_cols=17 Identities=29% Similarity=0.147 Sum_probs=14.0
Q ss_pred cEEEEccCCChhhHHHH
Q 009003 215 DVIGAAETGSGKTLAFG 231 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~ 231 (547)
.+|++||.|+|||.+..
T Consensus 42 a~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 42 AYIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999996543
No 280
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.27 E-value=0.17 Score=55.93 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=14.7
Q ss_pred CcEEEEccCCChhhHHHH
Q 009003 214 KDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~ 231 (547)
+.+|++||.|+|||....
T Consensus 39 Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 368999999999996543
No 281
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.22 E-value=0.068 Score=54.53 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHH
Q 009003 203 KACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELA 277 (547)
Q Consensus 203 ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La 277 (547)
...+..++..+.+++++|+||||||.. +-.++..+ ...-+++.+-.+.||.
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i-----------------------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTM-SKTLISAI-----------------------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHH-HHHHHccc-----------------------CCCCCEEEECCCcccc
Confidence 344555566789999999999999943 23333332 1124677778888764
No 282
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.22 E-value=0.094 Score=52.50 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=44.9
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
..|...++-|...+..++....++|++|.||||||.. +-+|... -+.. -|+|.+--
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~---------------------i~~~-eRvItiED 208 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGF---------------------IDSD-ERVITIED 208 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhc---------------------CCCc-ccEEEEee
Confidence 4566889999999988886666999999999999933 3333221 1122 27899888
Q ss_pred CHHHHHH
Q 009003 273 TRELALQ 279 (547)
Q Consensus 273 tr~La~q 279 (547)
|.||--+
T Consensus 209 taELql~ 215 (355)
T COG4962 209 TAELQLA 215 (355)
T ss_pred hhhhccC
Confidence 8887543
No 283
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.20 E-value=0.18 Score=60.54 Aligned_cols=125 Identities=20% Similarity=0.215 Sum_probs=76.3
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHH
Q 009003 198 PTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELA 277 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La 277 (547)
.|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ...-++|+|+=|+..|
T Consensus 2 ~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------------------~~~~~il~~tFt~~aa 58 (1232)
T TIGR02785 2 WTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRG--------------------VDIDRLLVVTFTNAAA 58 (1232)
T ss_pred CCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------------------CCHhhEEEEeccHHHH
Confidence 5889999995 3688999999999999987655555554321 1113599999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch
Q 009003 278 LQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 278 ~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ 352 (547)
..+.+.+.......-- .........+.+..-...-|+|-+.++..+-+.....+.|.. .+=|.||...
T Consensus 59 ~e~~~ri~~~l~~~~~------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP-~F~i~de~e~ 126 (1232)
T TIGR02785 59 REMKERIEEALQKALQ------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDP-SFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHHHHHHHHHh------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCC-CceeCCHHHH
Confidence 8888777754321100 000111112223333457789999987554332222233321 4566888876
No 284
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.16 E-value=0.27 Score=49.48 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
++.+++.|++|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999944
No 285
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.15 E-value=0.23 Score=56.35 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+++-|.+++.. ....++|.|..|||||.+...-+...+... +..+-++|+|+-|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~-------------------~i~P~~IL~lTFT~k 60 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK-------------------NVAPWNILAITFTNK 60 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC-------------------CCCHHHeeeeeccHH
Confidence 3588999999853 356899999999999977544443333111 112236999999999
Q ss_pred HHHHHHHHHHHhhc
Q 009003 276 LALQVTDHLKGVAK 289 (547)
Q Consensus 276 La~qv~~~l~~~~~ 289 (547)
.|..+.+.+..+..
T Consensus 61 AA~em~~Rl~~~~~ 74 (726)
T TIGR01073 61 AAREMKERVEKLLG 74 (726)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887743
No 286
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.13 E-value=0.26 Score=48.47 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHH---HhcCC-cEEEEccCCChhhHHH
Q 009003 197 EPTPIQKACIPAA---AHQGK-DVIGAAETGSGKTLAF 230 (547)
Q Consensus 197 ~~~~iQ~~~i~~~---l~~~~-dvli~a~TGsGKT~~~ 230 (547)
.+++.+.+++..+ +..+. .++++||+|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 4556666666544 22333 6889999999999553
No 287
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.05 E-value=0.43 Score=59.62 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 196 KEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
..+++.|+.|+..++.+ ++-++|.|..|+|||.... .++..+...- ...+.+++.++||-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~-~~~~~i~~~~------------------~~~g~~v~glApT~ 1078 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLE-SRYKPVLQAF------------------ESEQLQVIGLAPTH 1078 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHH-HHHHHHHHHH------------------HhcCCeEEEEeChH
Confidence 37899999999998743 3566889999999995431 1111111110 11246799999997
Q ss_pred HHHHHH
Q 009003 275 ELALQV 280 (547)
Q Consensus 275 ~La~qv 280 (547)
.-|.++
T Consensus 1079 ~Aa~~L 1084 (1960)
T TIGR02760 1079 EAVGEL 1084 (1960)
T ss_pred HHHHHH
Confidence 766554
No 288
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.02 E-value=0.16 Score=53.93 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=47.1
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEE-EEEccC-HHHHHHHHHHHHHhhc
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRA-LIITPT-RELALQVTDHLKGVAK 289 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lil~Pt-r~La~qv~~~l~~~~~ 289 (547)
.|.-++++||||+|||.+...-+.....+. +..++ ||-+-+ |.-+ .+.+..++.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---------------------G~~kV~LI~~Dt~RigA---~EQLr~~Ae 310 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH---------------------GASKVALLTTDSYRIGG---HEQLRIYGK 310 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc---------------------CCCeEEEEeCCccchhH---HHHHHHHHH
Confidence 355688999999999966443322221110 01133 333333 3223 344555555
Q ss_pred CCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH
Q 009003 290 GINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL 325 (547)
Q Consensus 290 ~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l 325 (547)
..++.+...............+.+.-.|+|-|+|+.
T Consensus 311 ilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 311 ILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcC
Confidence 556555444333333333344455567899999955
No 289
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.99 E-value=0.38 Score=50.73 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhhHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~ 231 (547)
...++++|++|+|||....
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3568899999999996643
No 290
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.98 E-value=1.2 Score=48.08 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=84.5
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI- 291 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~- 291 (547)
.+-.++.-|---|||+ |+.|++..++.. ..+.++.|++.-+-.+.-|+.++...+...
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s--------------------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF 260 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN--------------------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMF 260 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh--------------------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhc
Confidence 3456778899999995 588888888654 457899999999998888888887544321
Q ss_pred CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH--HHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE--LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 292 ~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~--~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
+-+.+. -..+-.|.+.-|+.=.. ++.....+.+.-.+..+|+|||||-+- .+.+..|+-.|
T Consensus 261 ~~~~vi-------------~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm 323 (668)
T PHA03372 261 PRKHTI-------------ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFL 323 (668)
T ss_pred Ccccee-------------eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhh
Confidence 211000 00122455555543211 111113334556788999999999763 45667777666
Q ss_pred CCCCCCCCCCCcccccccccccccCCCcEEEEEeccC
Q 009003 370 PMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406 (547)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 406 (547)
+. +..++|+.|.|-
T Consensus 324 ~q-----------------------~~~KiIfISS~N 337 (668)
T PHA03372 324 AQ-----------------------NTTKIIFISSTN 337 (668)
T ss_pred cc-----------------------cCceEEEEeCCC
Confidence 53 556777777774
No 291
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.96 E-value=0.35 Score=47.53 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCChhhHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~ 230 (547)
..+..+++.||+|+|||...
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHH
Confidence 36899999999999999653
No 292
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.14 Score=47.07 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=60.8
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
+.=.++++|+.||||.. +|+++.+.. ..+.++++..|...-= + +
T Consensus 4 g~l~~i~gpM~SGKT~e----Ll~r~~~~~-------------------~~g~~v~vfkp~iD~R---------~----~ 47 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE----LLRRARRYK-------------------EAGMKVLVFKPAIDTR---------Y----G 47 (201)
T ss_pred EEEEEEEccCcCcchHH----HHHHHHHHH-------------------HcCCeEEEEecccccc---------c----c
Confidence 34468999999999964 334433322 1245788888874310 0 1
Q ss_pred cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 293 VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 293 ~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
...+.-.-|. ....++|-++..+...+.... ....+.+|.||||+-+. ......+..+.+.++
T Consensus 48 ~~~V~Sr~G~----------~~~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~~-~~~v~~l~~lad~lg 110 (201)
T COG1435 48 VGKVSSRIGL----------SSEAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFFD-EELVYVLNELADRLG 110 (201)
T ss_pred cceeeeccCC----------cccceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhCC-HHHHHHHHHHHhhcC
Confidence 1111111111 123577778888888775431 12238899999999654 344555666665543
No 293
>PRK04195 replication factor C large subunit; Provisional
Probab=93.91 E-value=0.21 Score=53.72 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+|+.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999954
No 294
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.34 Score=53.04 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.6
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
-+|++|+.|+|||...
T Consensus 40 A~LFtGP~GvGKTTLA 55 (700)
T PRK12323 40 AYLFTGTRGVGKTTLS 55 (700)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4699999999999654
No 295
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.83 E-value=0.15 Score=48.27 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.4
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.++|+.||+|.|||..
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 4789999999999944
No 296
>PLN03025 replication factor C subunit; Provisional
Probab=93.81 E-value=0.59 Score=47.39 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..++++||+|+|||..
T Consensus 35 ~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 35 PNLILSGPPGTGKTTS 50 (319)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999955
No 297
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=93.70 E-value=0.1 Score=40.42 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 501 HISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 501 ~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
.++..|...++.+..+||+|+..+|..++..|.++..
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 38 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI 38 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4678888889999999999999999999999998764
No 298
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.67 E-value=0.38 Score=49.84 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=21.5
Q ss_pred CccEEEEeccchhhhc-CChHHHHHHHHhCC
Q 009003 341 TLSFFVLDEADRMIEN-GHFRELQSIIDMLP 370 (547)
Q Consensus 341 ~l~~lViDEah~ll~~-~~~~~l~~i~~~l~ 370 (547)
++++|+||.++.+... .....+..+++.+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~ 205 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL 205 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH
Confidence 7889999999988533 23566666666665
No 299
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.35 Score=51.70 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.9
Q ss_pred CcEEEEccCCChhhHHHH
Q 009003 214 KDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~ 231 (547)
+.+|++||.|+|||.+..
T Consensus 36 ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 36 QSILLVGASGVGKTTCAR 53 (491)
T ss_pred ceEEEECCCCccHHHHHH
Confidence 468999999999996543
No 300
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.60 E-value=0.3 Score=46.79 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=32.3
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHh
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGV 287 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~ 287 (547)
.|..+++.|++|+|||...+--+.+.+.+. +-++++++ +.+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------------------ge~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----------------------GEKVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----------------------T--EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------------------CCcEEEEE-ecCCHHHHHHHHHHc
Confidence 467899999999999965333333433221 12577777 345556777777655
No 301
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.59 E-value=1.5 Score=45.81 Aligned_cols=19 Identities=42% Similarity=0.394 Sum_probs=14.9
Q ss_pred CcEEEEccCCChhhHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~l 232 (547)
.-++++||||+|||....-
T Consensus 224 ~vi~lvGptGvGKTTtaaK 242 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAK 242 (432)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999966443
No 302
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=0.16 Score=55.58 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=18.4
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
...+++||||||+|... -...+..++..
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEE 144 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEE 144 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhc
Confidence 45789999999988532 33444555544
No 303
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.49 E-value=0.24 Score=58.52 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=62.8
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.+++|++|+++-+..+++.+..+.. ++++.+++|+++.......+ ....+|+|||. ++..+ +++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----IierG----IDI 877 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 877 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhcc----ccc
Confidence 45899999999999999999887754 46788899999887654433 35799999994 34544 889
Q ss_pred CCccEEEEeccchh
Q 009003 340 HTLSFFVLDEADRM 353 (547)
Q Consensus 340 ~~l~~lViDEah~l 353 (547)
.++++||++.||++
T Consensus 878 P~v~~VIi~~ad~f 891 (1147)
T PRK10689 878 PTANTIIIERADHF 891 (1147)
T ss_pred ccCCEEEEecCCCC
Confidence 99999999999864
No 304
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.45 E-value=1.3 Score=40.09 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=21.2
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
...+++|||+||.|. ..-...+.+++..-|
T Consensus 101 ~~~KviiI~~ad~l~-~~a~NaLLK~LEepp 130 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT-EEAQNALLKTLEEPP 130 (162)
T ss_dssp SSSEEEEEETGGGS--HHHHHHHHHHHHSTT
T ss_pred CCceEEEeehHhhhh-HHHHHHHHHHhcCCC
Confidence 568899999999986 334566666666554
No 305
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.43 E-value=0.99 Score=48.09 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcC
Q 009003 222 TGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGG 301 (547)
Q Consensus 222 TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~ 301 (547)
.+.|++-.-++.+.+.+.. ...|.+||.+-+.+-|.|++.+|. ..-++++.+++|.
T Consensus 366 vF~gse~~K~lA~rq~v~~---------------------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e 421 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVAS---------------------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGE 421 (593)
T ss_pred eeeecchhHHHHHHHHHhc---------------------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecc
Confidence 4778887777777776632 245779999999999999999997 2347888889999
Q ss_pred CCHHHHHHHhc----CCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccc
Q 009003 302 MSTEKQERLLK----ARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 351 (547)
Q Consensus 302 ~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah 351 (547)
.........+. ....|+||| ++|.++ +++..+.+||.+..-
T Consensus 422 ~~~~qrde~~~~FR~g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 422 RSQKQRDETMERFRIGKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred cchhHHHHHHHHHhccCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 77655544332 468999999 455555 889999999996654
No 306
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.40 E-value=0.84 Score=43.91 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+++.+++|+|||..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 22 PAGSLILIEGDESTGKSIL 40 (230)
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3577899999999999965
No 307
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.37 E-value=0.75 Score=47.24 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=19.1
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
....+++||||||.|-. .-...+.++++.
T Consensus 139 ~g~~rVviIDeAd~l~~-~aanaLLk~LEE 167 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR-NAANAILKTLEE 167 (351)
T ss_pred cCCceEEEEEchhhcCH-HHHHHHHHHHhc
Confidence 35678999999999852 233445555544
No 308
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.34 E-value=0.63 Score=51.21 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.2
Q ss_pred CcEEEEccCCChhhHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~l 232 (547)
+.+|++||.|+|||....+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARI 65 (598)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999966433
No 309
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.30 E-value=0.064 Score=55.97 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=41.1
Q ss_pred cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcE
Q 009003 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~ 294 (547)
+++++|+||||||.++++|-+-.. +..+||+=|--++........+.. |.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------------------~~s~vv~D~Kge~~~~t~~~r~~~----G~~ 51 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------------------PGSVVVLDPKGENFELTSEHRRAL----GRK 51 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------------------CCCEEEEccchhHHHHHHHHHHHc----CCe
Confidence 478999999999999999855321 235888889999987777666544 555
Q ss_pred EEEEE
Q 009003 295 VVPIV 299 (547)
Q Consensus 295 v~~~~ 299 (547)
|.++.
T Consensus 52 V~v~n 56 (384)
T cd01126 52 VFVFD 56 (384)
T ss_pred EEEEc
Confidence 55544
No 310
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.27 E-value=1.2 Score=47.02 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhhHHH
Q 009003 214 KDVIGAAETGSGKTLAF 230 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~ 230 (547)
..+++.||+|+|||...
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37899999999999543
No 311
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.25 E-value=0.15 Score=51.83 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 204 ACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 204 ~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
..+..++..+.+++|+|+||||||.. +-.++..
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTl-l~aL~~~ 183 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTF-TNAALRE 183 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHhh
Confidence 44555556789999999999999943 3334444
No 312
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.23 E-value=0.14 Score=47.57 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
..++-|...+..++..+..+++++|||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 467778888888888899999999999999954
No 313
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.63 Score=50.53 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=18.8
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
....+++||||||+|.. +-...+..++..
T Consensus 117 ~g~~kViIIDEa~~ls~-~a~naLLK~LEe 145 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK-QSFNALLKTLEE 145 (546)
T ss_pred cCCcEEEEEechhhccH-HHHHHHHHHHhc
Confidence 34668999999999863 233444445444
No 314
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.21 E-value=0.26 Score=56.92 Aligned_cols=79 Identities=16% Similarity=0.337 Sum_probs=63.8
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.+++|++|+++-+..+++.|..+.. ++++..++|+++.......+ ....+|+|||. .+..+ +++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~G----IDI 728 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIETG----IDI 728 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcc----ccc
Confidence 46899999999999999999887643 57899999999876655433 35789999995 44554 899
Q ss_pred CCccEEEEeccchh
Q 009003 340 HTLSFFVLDEADRM 353 (547)
Q Consensus 340 ~~l~~lViDEah~l 353 (547)
.++.+||++.|++.
T Consensus 729 p~v~~VIi~~a~~~ 742 (926)
T TIGR00580 729 PNANTIIIERADKF 742 (926)
T ss_pred ccCCEEEEecCCCC
Confidence 99999999999864
No 315
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.19 E-value=0.43 Score=49.31 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
..++++.||+|+|||..
T Consensus 40 ~~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAV 56 (365)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999955
No 316
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=93.17 E-value=0.18 Score=57.14 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=52.0
Q ss_pred CCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCccccccccccccc
Q 009003 314 RPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQ 393 (547)
Q Consensus 314 ~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 393 (547)
...|+++||..|..-|- ...+.+..|..|||||||++.......-|.++.+.-+
T Consensus 7 ~ggi~~~T~rIl~~DlL---~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n----------------------- 60 (814)
T TIGR00596 7 EGGIFSITSRILVVDLL---TGIIPPELITGILVLRADRIIESSQEAFILRLYRQKN----------------------- 60 (814)
T ss_pred cCCEEEEechhhHhHHh---cCCCCHHHccEEEEeecccccccccHHHHHHHHHHhC-----------------------
Confidence 35699999999964442 2248899999999999999976666667777776655
Q ss_pred CCCcEEEEEeccCCC
Q 009003 394 RKKRQTLVFSATIAL 408 (547)
Q Consensus 394 ~~~~q~i~~SATl~~ 408 (547)
+..-+.+|||.+..
T Consensus 61 -~~gfIkafSdsP~~ 74 (814)
T TIGR00596 61 -KTGFIKAFSDNPEA 74 (814)
T ss_pred -CCcceEEecCCCcc
Confidence 45568999999874
No 317
>PHA02244 ATPase-like protein
Probab=93.17 E-value=0.4 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHhcCCcEEEEccCCChhhHH
Q 009003 205 CIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 205 ~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
.+..++..+.+|++.||||+|||..
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHH
Confidence 3344556789999999999999944
No 318
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.14 E-value=0.42 Score=48.13 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..++.+++.|++|+|||..
T Consensus 62 ~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred hcCCcEEEEeCCCChHHHH
Confidence 3588999999999999954
No 319
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.54 Score=51.98 Aligned_cols=28 Identities=14% Similarity=0.388 Sum_probs=18.7
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
..++++||||||+|... -...+.+++..
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEE 145 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEE 145 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHc
Confidence 46789999999988632 34444445544
No 320
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.12 E-value=0.87 Score=44.79 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=39.3
Q ss_pred cEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh--hHHHHhhhcc
Q 009003 343 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA--DFRKKLKHGS 420 (547)
Q Consensus 343 ~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~--~~~~~l~~~~ 420 (547)
+++|+||+|.|- .|..+.+.-.++..+...+ .++ ...-.|++|-+-.... -..++..++.
T Consensus 180 slFIFDE~DKmp-~gLld~lkpfLdyyp~v~g----v~f-------------rkaIFIfLSN~gg~eI~~~aL~~~~~g~ 241 (344)
T KOG2170|consen 180 SLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSG----VDF-------------RKAIFIFLSNAGGSEIARIALENARNGK 241 (344)
T ss_pred ceEEechhhhcC-HhHHHHHhhhhcccccccc----ccc-------------cceEEEEEcCCcchHHHHHHHHHHHcCC
Confidence 689999999986 6777888888776553222 111 3456788887754222 1334444454
Q ss_pred ccccc
Q 009003 421 LKSKQ 425 (547)
Q Consensus 421 ~~~~~ 425 (547)
.....
T Consensus 242 ~re~~ 246 (344)
T KOG2170|consen 242 PREQL 246 (344)
T ss_pred Ccccc
Confidence 44433
No 321
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.16 Score=54.74 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=18.7
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
.+++++||||||.|... -...+..++...
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~naLLk~LEep 146 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SFNALLKTLEEP 146 (509)
T ss_pred CCcEEEEEEChHhcCHH-HHHHHHHHHhcc
Confidence 46789999999988632 234444455443
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.04 E-value=0.35 Score=50.03 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.5
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
-++++||.|+|||...
T Consensus 40 ~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 40 AWLLSGTRGVGKTTIA 55 (363)
T ss_pred EEEEecCCCCCHHHHH
Confidence 4689999999999653
No 323
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.97 E-value=0.21 Score=50.43 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
+..+++.|..-+..++..++++++|++||||||.. +.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC
Confidence 34678888887878888899999999999999943 44444443
No 324
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=0.2 Score=54.78 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.7
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
+++-.+||+|||-.-||......++..++.+.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 66778999999999999888888888887765
No 325
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.71 E-value=0.13 Score=55.25 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=41.9
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCc
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~ 293 (547)
.++++.||||||||..+++|.|-.. ..-+||+=|--+|+......+++. |+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-------------------------~~s~iV~D~KgEl~~~t~~~r~~~----G~ 95 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-------------------------PGSMIVTDPKGELYEKTAGYRKKR----GY 95 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-------------------------cCCEEEEECCCcHHHHHHHHHHHC----CC
Confidence 3699999999999999999966321 114788889989988777766665 44
Q ss_pred EEEEEE
Q 009003 294 RVVPIV 299 (547)
Q Consensus 294 ~v~~~~ 299 (547)
+|.++.
T Consensus 96 ~V~vld 101 (469)
T PF02534_consen 96 KVYVLD 101 (469)
T ss_pred EEEEee
Confidence 555443
No 326
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.70 E-value=0.2 Score=46.12 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=15.7
Q ss_pred HhcCCcEEEEccCCChhhHHH
Q 009003 210 AHQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 210 l~~~~dvli~a~TGsGKT~~~ 230 (547)
+.++.++++.|++|+|||...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH
Confidence 346889999999999999653
No 327
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.70 E-value=0.42 Score=51.44 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=14.8
Q ss_pred CcEEEEccCCChhhHHHH
Q 009003 214 KDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~ 231 (547)
+.+|++||.|+|||.+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999996543
No 328
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.59 E-value=0.4 Score=50.24 Aligned_cols=17 Identities=35% Similarity=0.239 Sum_probs=14.2
Q ss_pred cEEEEccCCChhhHHHH
Q 009003 215 DVIGAAETGSGKTLAFG 231 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~ 231 (547)
.+|++||.|+|||.+..
T Consensus 40 a~lf~Gp~G~GKtt~A~ 56 (397)
T PRK14955 40 GYIFSGLRGVGKTTAAR 56 (397)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999996643
No 329
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.40 E-value=0.6 Score=49.61 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=32.0
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHh
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGV 287 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~ 287 (547)
.|.-+++.+++|+|||...+- ++..+.+ .+.++||+.- .+...|+...+..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq-~a~~~a~----------------------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQ-VAARLAA----------------------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHHHHHh----------------------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 466789999999999954322 2222211 1346888774 45566776665554
No 330
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.63 Score=51.25 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=14.3
Q ss_pred cEEEEccCCChhhHHHHH
Q 009003 215 DVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~l 232 (547)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 359999999999966443
No 331
>PTZ00293 thymidine kinase; Provisional
Probab=92.28 E-value=0.6 Score=43.99 Aligned_cols=17 Identities=29% Similarity=0.141 Sum_probs=14.0
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
|.=.+++||++||||.-
T Consensus 4 G~i~vi~GpMfSGKTte 20 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE 20 (211)
T ss_pred eEEEEEECCCCChHHHH
Confidence 55568999999999954
No 332
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.28 E-value=0.35 Score=54.81 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=18.7
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
...+++||||||+|. ..-...+.+++..
T Consensus 118 gk~KViIIDEAh~LT-~eAqNALLKtLEE 145 (944)
T PRK14949 118 GRFKVYLIDEVHMLS-RSSFNALLKTLEE 145 (944)
T ss_pred CCcEEEEEechHhcC-HHHHHHHHHHHhc
Confidence 457899999999985 3334445555544
No 333
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.25 E-value=0.63 Score=44.03 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
..-+++|+||||.|. .|-...+.+.+....
T Consensus 112 grhKIiILDEADSMT-~gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT-AGAQQALRRTMEIYS 141 (333)
T ss_pred CceeEEEeeccchhh-hHHHHHHHHHHHHHc
Confidence 455789999999997 455555666555443
No 334
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.21 E-value=1.4 Score=45.29 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=20.5
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
....+|++||.|. -+.+..-.+..++..+-
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~ 155 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALF 155 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHH
Confidence 4557999999994 45555666666666653
No 335
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=0.36 Score=52.88 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.1
Q ss_pred CcEEEEccCCChhhHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~l 232 (547)
..+|+++|.|+|||.+..+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999976443
No 336
>PRK06620 hypothetical protein; Validated
Probab=92.17 E-value=0.39 Score=45.64 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.8
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..++++||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5589999999999944
No 337
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.14 E-value=0.17 Score=55.50 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=44.6
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
...+++.||||||||.++++|-|-.. +.-+||+=|--|+........+++ |
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-------------------------~~S~VV~DpKGEl~~~Ta~~R~~~----G 208 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-------------------------EDSVVVHDIKLENYELTSGWREKQ----G 208 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-------------------------CCCEEEEeCcHHHHHHHHHHHHHC----C
Confidence 45799999999999999999976542 124888889999988777766654 6
Q ss_pred cEEEEEE
Q 009003 293 VRVVPIV 299 (547)
Q Consensus 293 ~~v~~~~ 299 (547)
++|.++.
T Consensus 209 ~~V~vfd 215 (606)
T PRK13897 209 QKVFVWE 215 (606)
T ss_pred CeEEEEe
Confidence 6666654
No 338
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.10 E-value=0.54 Score=51.74 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=58.0
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+|+..|.++++.|... ++.+..++|+.........+ ....+|||||. .+..+ +++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~arG----IDi 323 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAARG----LHI 323 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhcC----CCc
Confidence 457999999999999999988765 78999999998886654433 24689999994 34444 888
Q ss_pred CCccEEEEecc
Q 009003 340 HTLSFFVLDEA 350 (547)
Q Consensus 340 ~~l~~lViDEa 350 (547)
..+++||.-.+
T Consensus 324 p~V~~VInyd~ 334 (572)
T PRK04537 324 DGVKYVYNYDL 334 (572)
T ss_pred cCCCEEEEcCC
Confidence 99998886443
No 339
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.09 E-value=1.1 Score=43.40 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=34.2
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHh
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGV 287 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~ 287 (547)
.|..+++.|++|+|||...+--+.+.+ + .+-++++++ +.+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~----------------------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------------------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H----------------------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 467899999999999965332233332 1 134688877 556667777777665
No 340
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.96 E-value=1.8 Score=48.74 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..+++.||+|+|||..
T Consensus 53 ~slLL~GPpGtGKTTL 68 (725)
T PRK13341 53 GSLILYGPPGVGKTTL 68 (725)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4789999999999954
No 341
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.86 E-value=0.39 Score=49.03 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 187 ~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
+..+...|+ +++.+...+..++..+.+++++++||||||..
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 444555665 55677777777777788999999999999944
No 342
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.84 E-value=1.6 Score=44.25 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHhc----CCcEEEEccCCChhhHH
Q 009003 199 TPIQKACIPAAAHQ----GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 199 ~~iQ~~~i~~~l~~----~~dvli~a~TGsGKT~~ 229 (547)
+|+|...+..+... .+-+|++||.|.|||..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~l 37 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAF 37 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHH
Confidence 57777777766532 23579999999999955
No 343
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=1.1 Score=49.38 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=19.4
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
...++++||||+|.|.. +-...+..++..
T Consensus 117 ~~~~KVvIIdev~~Lt~-~a~naLLk~LEe 145 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST-NAFNALLKTLEE 145 (576)
T ss_pred cCCceEEEEEChhhCCH-HHHHHHHHHHHc
Confidence 35678999999998863 334445555544
No 344
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.80 E-value=1.2 Score=41.26 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.6
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
+.+|+.||+|+|||..
T Consensus 15 ~~~L~~G~~G~gkt~~ 30 (188)
T TIGR00678 15 HAYLFAGPEGVGKELL 30 (188)
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999954
No 345
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.80 E-value=0.33 Score=53.09 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=19.0
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
....+++||||||.|.. +-...+..++..
T Consensus 116 ~~~~KVvIIDEah~Lt~-~A~NALLK~LEE 144 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTT-AGFNALLKIVEE 144 (584)
T ss_pred cCCceEEEEECCCcCCH-HHHHHHHHHHhc
Confidence 35678999999998863 233444444444
No 346
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=91.79 E-value=1.4 Score=49.28 Aligned_cols=93 Identities=25% Similarity=0.382 Sum_probs=66.4
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.+.++||+++|+..|.++.+.|... ++.+..++|+.........+ .+..+|+||| ..+..+ ++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG----fD 507 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LD 507 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC----ee
Confidence 3568999999999999999988876 78888888887764433222 3568999999 334444 88
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~ 371 (547)
+..++++|+=+++... +......++..+..
T Consensus 508 iP~v~lVvi~DadifG---~p~~~~~~iqriGR 537 (655)
T TIGR00631 508 LPEVSLVAILDADKEG---FLRSERSLIQTIGR 537 (655)
T ss_pred eCCCcEEEEeCccccc---CCCCHHHHHHHhcC
Confidence 9999999998888642 33233344554443
No 347
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.73 E-value=0.22 Score=54.48 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=14.5
Q ss_pred CcEEEEccCCChhhHHHH
Q 009003 214 KDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~ 231 (547)
+-.|++||.|+|||.+.-
T Consensus 39 hayLf~Gp~GtGKTt~Ak 56 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAK 56 (559)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999996643
No 348
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.95 Score=52.00 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=34.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCC-CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFK-EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~-~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
.-.|.++|....+...|+++-+. -++|-+..- .-+..-+-|++++|.|+|||+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~--~~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDN--FNITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhh--cccCCCcceeecCCCCCchhHH
Confidence 45677888777777777776432 112211111 1122457799999999999965
No 349
>CHL00181 cbbX CbbX; Provisional
Probab=91.65 E-value=0.9 Score=45.28 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
+.++++.||+|+|||...
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 557999999999999653
No 350
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=1.5 Score=47.27 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=31.5
Q ss_pred ccccccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHH
Q 009003 174 FDAWNELRLHPLLMKSIYR---LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~---~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~ 230 (547)
-.+|.+.|=-..+...|.. ..+.+|..++.-.| ....-||+|||+|+|||+.+
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi----~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI----DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC----CCCCceEEeCCCCccHHHHH
Confidence 4578887765555555443 12333333332222 23467999999999999653
No 351
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.59 E-value=0.51 Score=49.89 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=56.3
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
..++||.|+|+..|..+++.|... ++++..++|+.........+ .+..+|||||. .+..+ +++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi 321 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAARG----LHI 321 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhhcC----CCc
Confidence 357999999999999999888765 78999999998876654433 35789999994 34444 888
Q ss_pred CCccEEEEe
Q 009003 340 HTLSFFVLD 348 (547)
Q Consensus 340 ~~l~~lViD 348 (547)
..+++||.-
T Consensus 322 p~v~~VI~~ 330 (423)
T PRK04837 322 PAVTHVFNY 330 (423)
T ss_pred cccCEEEEe
Confidence 999887754
No 352
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.55 E-value=3.2 Score=43.65 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=13.7
Q ss_pred CcEEEEccCCChhhHHH
Q 009003 214 KDVIGAAETGSGKTLAF 230 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~ 230 (547)
.-++++|++|+|||...
T Consensus 101 ~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTC 117 (429)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999553
No 353
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.19 Score=51.55 Aligned_cols=18 Identities=44% Similarity=0.481 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
.-|||+.+|||||||+..
T Consensus 226 KSNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLA 243 (564)
T ss_pred cccEEEECCCCCchhHHH
Confidence 458999999999999653
No 354
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.48 E-value=0.52 Score=54.42 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=75.4
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.++++.||.|..+-..++...++.+.. ..+|++.+|.+.....+..+ ..++||+||| .+++.+ ++
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----TIIEtG----ID 870 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----TIIETG----ID 870 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----eeeecC----cC
Confidence 467999999999999999999999966 45788899999987766554 3589999999 355665 89
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
..+...|||+-||++. .+++..++.++.
T Consensus 871 IPnANTiIIe~AD~fG----LsQLyQLRGRVG 898 (1139)
T COG1197 871 IPNANTIIIERADKFG----LAQLYQLRGRVG 898 (1139)
T ss_pred CCCCceEEEecccccc----HHHHHHhccccC
Confidence 9999999999999874 455666665554
No 355
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.42 E-value=1.3 Score=42.57 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
.|.-+++.|++|+|||...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCcEEEEECCCCCChHHHH
Confidence 3677899999999999553
No 356
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.34 E-value=1.5 Score=44.75 Aligned_cols=32 Identities=16% Similarity=0.020 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHhc----CCcEEEEccCCChhhHHH
Q 009003 199 TPIQKACIPAAAHQ----GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 199 ~~iQ~~~i~~~l~~----~~dvli~a~TGsGKT~~~ 230 (547)
+|+|...+..+... .+-+++.||.|.||+...
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA 38 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA 38 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH
Confidence 57777777666531 236789999999999653
No 357
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.30 E-value=0.19 Score=49.61 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 201 IQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 201 iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
...+.+..++..+.+++++|+||||||... -.++..
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~ 150 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEE 150 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHH
T ss_pred HHHHHHhhccccceEEEEECCCccccchHH-HHHhhh
Confidence 333444444446889999999999999543 334444
No 358
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.30 E-value=0.32 Score=50.20 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.+..++++||||||||.. +..+++++
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i 173 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHC 173 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 455789999999999954 34455554
No 359
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.27 E-value=1.3 Score=46.25 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
+.+|+.||.|+|||..
T Consensus 37 ha~Lf~Gp~G~GKt~l 52 (394)
T PRK07940 37 HAWLFTGPPGSGRSVA 52 (394)
T ss_pred eEEEEECCCCCcHHHH
Confidence 4689999999999955
No 360
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=2.1 Score=45.42 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=15.3
Q ss_pred CCccEEEEeccchhhhcC
Q 009003 340 HTLSFFVLDEADRMIENG 357 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~ 357 (547)
+.+++||||+..+|+++.
T Consensus 597 S~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYV 614 (744)
T ss_pred CcceEEEEcchhhhhccc
Confidence 567899999999999874
No 361
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.24 E-value=0.69 Score=46.59 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=34.6
Q ss_pred HHHHHHHhcCC--cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHH
Q 009003 204 ACIPAAAHQGK--DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVT 281 (547)
Q Consensus 204 ~~i~~~l~~~~--dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~ 281 (547)
-.+-.++++++ .+|+.+|.|+|||...-+-+.. ......+-+=+..|.+-...+.
T Consensus 151 gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~t-----------------------sk~~SyrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 151 GLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST-----------------------SKKHSYRFVELSATNAKTNDVR 207 (554)
T ss_pred hHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh-----------------------cCCCceEEEEEeccccchHHHH
Confidence 34444455554 7899999999999543222111 1222356677777766666655
Q ss_pred HHHH
Q 009003 282 DHLK 285 (547)
Q Consensus 282 ~~l~ 285 (547)
..+.
T Consensus 208 ~ife 211 (554)
T KOG2028|consen 208 DIFE 211 (554)
T ss_pred HHHH
Confidence 5554
No 362
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.20 E-value=0.34 Score=52.85 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=14.2
Q ss_pred CcEEEEccCCChhhHHH
Q 009003 214 KDVIGAAETGSGKTLAF 230 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~ 230 (547)
+-+|++||.|+|||..+
T Consensus 39 hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA 55 (605)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999653
No 363
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=1.4 Score=47.36 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=32.2
Q ss_pred cccccccccCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 171 STEFDAWNELRLHPLLMKSIYRL--QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 171 ~~~~~~f~~l~l~~~l~~~l~~~--~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
+....+|.++|=-...+..|..+ .+..|-.++.-.+ +..+-||++||+|+|||..
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv----~PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV----RPPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC----CCCCceeeeCCCCccHHHH
Confidence 33344677775333333333221 2455666555443 3568899999999999943
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.04 E-value=1.2 Score=43.93 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.0
Q ss_pred CCcEEEEccCCChhhHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~ 231 (547)
.+-+++++++|+|||....
T Consensus 72 ~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567889999999996543
No 365
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.96 E-value=1.6 Score=45.01 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=18.7
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
.....++||||||.|- ......+.++++.
T Consensus 139 ~~~~kVviIDead~m~-~~aanaLLK~LEe 167 (365)
T PRK07471 139 EGGWRVVIVDTADEMN-ANAANALLKVLEE 167 (365)
T ss_pred cCCCEEEEEechHhcC-HHHHHHHHHHHhc
Confidence 4567899999999884 2233444444444
No 366
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.91 E-value=0.89 Score=50.76 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.9
Q ss_pred cEEEEccCCChhhHHHH
Q 009003 215 DVIGAAETGSGKTLAFG 231 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~ 231 (547)
-.|++||.|+|||.++.
T Consensus 42 AYLF~GP~GtGKTt~Ar 58 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAK 58 (725)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46899999999996643
No 367
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.85 E-value=1.2 Score=51.94 Aligned_cols=54 Identities=22% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC--ceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI--DVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~--~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
.+|++|||++|....+.++..|..... ...++--+++...|.+++++|+++...
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~ 806 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA 806 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe
Confidence 468999999999999999999976422 133333455556789999999986443
No 368
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.84 E-value=0.58 Score=47.65 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=15.0
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
...+++.||+|+|||...
T Consensus 51 ~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CCcEEEECCCCccHHHHH
Confidence 357999999999999553
No 369
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=0.56 Score=51.92 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.3
Q ss_pred CcEEEEccCCChhhHHH
Q 009003 214 KDVIGAAETGSGKTLAF 230 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~ 230 (547)
+.+|++||.|+|||.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA 55 (620)
T ss_pred ceEEEECCCCCChHHHH
Confidence 46799999999999653
No 370
>PTZ00110 helicase; Provisional
Probab=90.66 E-value=0.9 Score=49.72 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=56.0
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.+.++||.|+|+.-|..+...|... ++.+..++|+.........+ .....|||||. .+..+ ++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~rG----ID 442 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VASRG----LD 442 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhhcC----CC
Confidence 4568999999999999999888754 77888999998876654433 24678999994 33444 88
Q ss_pred CCCccEEEE
Q 009003 339 LHTLSFFVL 347 (547)
Q Consensus 339 l~~l~~lVi 347 (547)
+..+.+||.
T Consensus 443 i~~v~~VI~ 451 (545)
T PTZ00110 443 VKDVKYVIN 451 (545)
T ss_pred cccCCEEEE
Confidence 899998886
No 371
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.64 E-value=7 Score=36.26 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=24.1
Q ss_pred CCCccEEEEeccchhhhcCC--hHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~--~~~l~~i~~~l~ 370 (547)
-..+++||+||+=..+..|+ .+.+..++..-|
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp 146 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARP 146 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC
Confidence 35789999999999888877 456666665543
No 372
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.61 Score=47.63 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+||++.+|+|+|||+.
T Consensus 384 fRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMF 400 (630)
T ss_pred hhheeeeCCCCCCchHH
Confidence 47999999999999965
No 373
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.55 E-value=0.38 Score=48.66 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.3
Q ss_pred CCCccEEEEeccchhhh
Q 009003 339 LHTLSFFVLDEADRMIE 355 (547)
Q Consensus 339 l~~l~~lViDEah~ll~ 355 (547)
.....++||||||.|..
T Consensus 107 ~~~~kviiidead~mt~ 123 (325)
T COG0470 107 EGGYKVVIIDEADKLTE 123 (325)
T ss_pred CCCceEEEeCcHHHHhH
Confidence 46789999999999963
No 374
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.50 E-value=1.1 Score=45.37 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHHHh---cCC---cEEEEccCCChhhHH
Q 009003 196 KEPTPIQKACIPAAAH---QGK---DVIGAAETGSGKTLA 229 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~---~~~---dvli~a~TGsGKT~~ 229 (547)
..++|+|..++..+.. +++ -+++.||.|.||+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l 42 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV 42 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH
Confidence 4678899888876642 333 589999999999854
No 375
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.38 E-value=0.46 Score=50.16 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=30.9
Q ss_pred HHHcCCCCCcHHHHHHHHHHHhcCC-cEEEEccCCChhhHHHHHHHHHHH
Q 009003 190 IYRLQFKEPTPIQKACIPAAAHQGK-DVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 190 l~~~~~~~~~~iQ~~~i~~~l~~~~-dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
+.+.|+ ++.|...+..+++..+ =+|+.||||||||.. +..+|+.+
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 344444 5777777777775444 467899999999965 45566665
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.35 E-value=3.3 Score=41.93 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.3
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++++||+|+|||..
T Consensus 114 ~~vi~lvGpnGsGKTTt 130 (318)
T PRK10416 114 PFVILVVGVNGVGKTTT 130 (318)
T ss_pred CeEEEEECCCCCcHHHH
Confidence 55678999999999955
No 377
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.34 E-value=0.97 Score=49.14 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=13.9
Q ss_pred cEEEEccCCChhhHHHH
Q 009003 215 DVIGAAETGSGKTLAFG 231 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~ 231 (547)
-+|++||.|+|||.+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~ 56 (527)
T PRK14969 40 AYLFTGTRGVGKTTLAR 56 (527)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999996543
No 378
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.34 E-value=1.4 Score=47.72 Aligned_cols=69 Identities=20% Similarity=0.415 Sum_probs=55.6
Q ss_pred EEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCCC
Q 009003 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELHT 341 (547)
Q Consensus 266 ~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~ 341 (547)
++||.|.|+..|..++..+... |+++..++|+.......+.+ ....+|+|||.-. .++ +++..
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva-----aRG----iDi~~ 341 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA-----ARG----LDIPD 341 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh-----hcc----CCccc
Confidence 6999999999999988888877 79999999999987665544 3578999999643 333 78888
Q ss_pred ccEEEE
Q 009003 342 LSFFVL 347 (547)
Q Consensus 342 l~~lVi 347 (547)
+.+||-
T Consensus 342 v~~Vin 347 (513)
T COG0513 342 VSHVIN 347 (513)
T ss_pred cceeEE
Confidence 888753
No 379
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.30 E-value=0.88 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred cEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 343 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 343 ~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
-+||+|..|.+.+.-....+..++++.| ...+.|+.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P------------------------~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAP------------------------ENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCC------------------------CCeEEEEEeccCC
Confidence 4999999999987777888999999998 6778888887644
No 380
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.29 E-value=1 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=18.7
Q ss_pred HhcCCcEEEEccCCChhhHHHH
Q 009003 210 AHQGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 210 l~~~~dvli~a~TGsGKT~~~~ 231 (547)
+.++.|++..||+|+|||..|.
T Consensus 206 ve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHH
Confidence 3578999999999999996654
No 381
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.28 E-value=0.32 Score=54.09 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=41.9
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
..+++++||||||||.+|++|-|-.. ...+||+=|--|+........... |
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~-------------------------~gS~VV~DpKGE~~~~Ta~~R~~~----G 189 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF-------------------------KGSVIALDVKGELFELTSRARKAS----G 189 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC-------------------------CCCEEEEeCCchHHHHHHHHHHhC----C
Confidence 35899999999999999999965431 125788888888877666655543 5
Q ss_pred cEEEEEE
Q 009003 293 VRVVPIV 299 (547)
Q Consensus 293 ~~v~~~~ 299 (547)
..|.++.
T Consensus 190 ~~V~~Fn 196 (670)
T PRK13850 190 DAVFKFA 196 (670)
T ss_pred CEEEEec
Confidence 6665544
No 382
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.27 E-value=3 Score=41.94 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=17.3
Q ss_pred CCcCHHHHHHHHHHHHhhhhcCCCC
Q 009003 518 AQMQQRARLKLFSQMITWIRKRPKG 542 (547)
Q Consensus 518 g~m~~~eR~~il~~F~~~~~k~~~g 542 (547)
.+.+.....+++....+...+.+.|
T Consensus 275 ~~~~~~~l~~~~~~~~~~d~~~k~g 299 (319)
T PRK00440 275 LDIPEELKVELIDAIGEADFRITEG 299 (319)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 4567777777777777766666555
No 383
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.26 E-value=0.29 Score=53.49 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=48.4
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 197 EPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+|+|.+.+..+-.. -+.|+++.++-+|||.+.+..+...+ . ..+..+|++.||.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~---------------------~~P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-D---------------------QDPGPMLYVQPTDD 73 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-E---------------------eCCCCEEEEEEcHH
Confidence 5689999988776421 25789999999999985433322221 1 11245999999999
Q ss_pred HHHHHH-HHHHHhhc
Q 009003 276 LALQVT-DHLKGVAK 289 (547)
Q Consensus 276 La~qv~-~~l~~~~~ 289 (547)
+|.+.. ..|..+..
T Consensus 74 ~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 74 AAKDFSKERLDPMIR 88 (557)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877 44555544
No 384
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.25 E-value=0.83 Score=47.27 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|+.++|.||+|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 689999999999999954
No 385
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.23 E-value=1.5 Score=45.33 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+++.|++|+|||..
T Consensus 81 ~GslvLI~G~pG~GKStL 98 (372)
T cd01121 81 PGSVILIGGDPGIGKSTL 98 (372)
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 467889999999999955
No 386
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.22 E-value=1.1 Score=47.89 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=55.0
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
..++||.|+|+.-|..+++.|... ++.+..++|+.........+ ....+|||||. .+..+ +++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~rG----iDi 311 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAARG----LDI 311 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHhcC----CCc
Confidence 357999999999999999888765 78899999999876554433 24689999994 33444 888
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 312 p~v~~VI~ 319 (456)
T PRK10590 312 EELPHVVN 319 (456)
T ss_pred ccCCEEEE
Confidence 89988874
No 387
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.13 E-value=0.84 Score=48.62 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=59.0
Q ss_pred CCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHHHHHHhcCCCCc
Q 009003 261 PKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRLWELMSGGEKHL 336 (547)
Q Consensus 261 ~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~~~~~~~ 336 (547)
.....++||.|-|+--|.++...+... ++++.+++|+.+.......+. ..+.|||||.=. .+ .
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA-----aR----G 404 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA-----AR----G 404 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc-----cc----c
Confidence 345679999999999999999888876 688999999999877766654 478999999532 22 3
Q ss_pred ccCCCccEEEE
Q 009003 337 VELHTLSFFVL 347 (547)
Q Consensus 337 ~~l~~l~~lVi 347 (547)
+++..|++||-
T Consensus 405 LDi~dV~lVIn 415 (519)
T KOG0331|consen 405 LDVPDVDLVIN 415 (519)
T ss_pred CCCccccEEEe
Confidence 78888888874
No 388
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.11 E-value=1 Score=47.86 Aligned_cols=71 Identities=20% Similarity=0.374 Sum_probs=55.8
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
..++||.|++++-|..++..|... ++.+..++|+.........+ ....+|||||. .+..+ +++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~~G----iDi 311 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAARG----IDI 311 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----ccC
Confidence 458999999999999999998864 78899999999876654433 24789999993 33433 888
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 312 p~v~~VI~ 319 (434)
T PRK11192 312 DDVSHVIN 319 (434)
T ss_pred CCCCEEEE
Confidence 99998874
No 389
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.04 E-value=1.1 Score=48.43 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.6
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
-+|++||.|+|||.+.
T Consensus 38 a~Lf~GppGtGKTTlA 53 (504)
T PRK14963 38 AYLFSGPRGVGKTTTA 53 (504)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4599999999999664
No 390
>PRK09087 hypothetical protein; Validated
Probab=90.03 E-value=0.74 Score=44.17 Aligned_cols=17 Identities=41% Similarity=0.382 Sum_probs=14.1
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++++||+|||||..
T Consensus 44 ~~~l~l~G~~GsGKThL 60 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHL 60 (226)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 44599999999999943
No 391
>PHA00729 NTP-binding motif containing protein
Probab=89.90 E-value=0.82 Score=43.56 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.++++.|++|+|||..
T Consensus 18 ~nIlItG~pGvGKT~L 33 (226)
T PHA00729 18 VSAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEEECCCCCCHHHH
Confidence 3799999999999954
No 392
>PRK10867 signal recognition particle protein; Provisional
Probab=89.89 E-value=3.2 Score=43.83 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.4
Q ss_pred CcEEEEccCCChhhHHHH
Q 009003 214 KDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~ 231 (547)
.-+++++++|+|||....
T Consensus 101 ~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 357899999999996643
No 393
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.86 E-value=1.6 Score=42.15 Aligned_cols=18 Identities=39% Similarity=0.346 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++|++|+|||..
T Consensus 12 ~G~l~lI~G~~G~GKT~~ 29 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF 29 (242)
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 577889999999999954
No 394
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.86 E-value=0.6 Score=51.53 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhhHHH
Q 009003 214 KDVIGAAETGSGKTLAF 230 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~ 230 (547)
+.+|++||.|+|||.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA 55 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTA 55 (585)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34699999999999653
No 395
>PF12846 AAA_10: AAA-like domain
Probab=89.85 E-value=0.88 Score=45.19 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=29.8
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 278 (547)
.+++|+|+||||||.... .++..+... +..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~----------------------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR----------------------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc----------------------CCCEEEEcCCchHHH
Confidence 578999999999997655 444444332 467888877766554
No 396
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.81 E-value=0.55 Score=46.18 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=28.5
Q ss_pred HHHcCCCCCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 190 IYRLQFKEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 190 l~~~~~~~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
+..+|+ .+-|.+.+..++.. +..++++|+||||||... ..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 445554 45566666555543 446899999999999543 3344443
No 397
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=89.75 E-value=2.6 Score=46.43 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcC--
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKG-- 290 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~-- 290 (547)
|--+|+.--.|-|||+.. +..+.-+++. ...-.||+|+|-..| ..|+.+|..+...
T Consensus 282 GFGCILAHSMGLGKTlQV-isF~diflRh--------------------T~AKtVL~ivPiNTl-QNWlsEfnmWiP~y~ 339 (1387)
T KOG1016|consen 282 GFGCILAHSMGLGKTLQV-ISFSDIFLRH--------------------TKAKTVLVIVPINTL-QNWLSEFNMWIPKYF 339 (1387)
T ss_pred CcceeeeeccccCceeEE-eehhHHHhhc--------------------CccceEEEEEehHHH-HHHHHHhhhhcCCCc
Confidence 445677777999999752 2222222221 112368999998766 4577777655432
Q ss_pred --C-----CcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHH
Q 009003 291 --I-----NVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRL 325 (547)
Q Consensus 291 --~-----~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l 325 (547)
. .+.|.++..+...-.++..+. ..--|++.-.+.+
T Consensus 340 sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemf 385 (1387)
T KOG1016|consen 340 SDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMF 385 (1387)
T ss_pred ccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHH
Confidence 2 255667776665544443332 2234666666654
No 398
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.73 E-value=0.79 Score=46.01 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.3
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...++++||+|+|||..
T Consensus 30 ~~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTL 46 (305)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35699999999999944
No 399
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.71 E-value=0.45 Score=47.96 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=19.8
Q ss_pred HHHHHHhcCCcEEEEccCCChhhHH
Q 009003 205 CIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 205 ~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
.+..++..+.+++++|+||||||..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHH
Confidence 3444555789999999999999954
No 400
>PF05729 NACHT: NACHT domain
Probab=89.67 E-value=2.7 Score=37.34 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=16.1
Q ss_pred cEEEEccCCChhhHHHHHHHHHHH
Q 009003 215 DVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
-++|.|+.|+|||... ..++..+
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHH
Confidence 4789999999999653 3344443
No 401
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=89.66 E-value=0.74 Score=51.67 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCc-eEEecCCcCHHHHHHHHHHHHhhh
Q 009003 475 AYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID-VWTLHAQMQQRARLKLFSQMITWI 536 (547)
Q Consensus 475 ~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~-v~~lhg~m~~~eR~~il~~F~~~~ 536 (547)
.++..++... ++++||||+|-..++.+++.|...... ....+|..+ +..+++.|+...
T Consensus 469 ~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~ 527 (654)
T COG1199 469 AYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASG 527 (654)
T ss_pred HHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhc
Confidence 3444455444 569999999999999999999887652 444555544 448888888764
No 402
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.63 E-value=0.3 Score=48.26 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 204 ACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 204 ~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
..+..++.+++.++++||+|+|||..
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHH
Confidence 44556667899999999999999964
No 403
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.48 E-value=1.5 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=15.6
Q ss_pred EEEccCCChhhHHHHHHHHHHHH
Q 009003 217 IGAAETGSGKTLAFGLPIMQRLL 239 (547)
Q Consensus 217 li~a~TGsGKT~~~~lp~l~~l~ 239 (547)
|+.++.|+|||.+.++.++.++.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~ 23 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWAL 23 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHh
Confidence 57789999999887776666653
No 404
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=89.47 E-value=0.73 Score=52.79 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=61.9
Q ss_pred chHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh------hhhcCCCCC
Q 009003 472 DKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT------WIRKRPKGD 543 (547)
Q Consensus 472 ~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~------~~~k~~~g~ 543 (547)
.|...|.-+|+.. .+.++|||+.-..+...|-.+|+.+|+-..-+.|....++|...+++|-. ++..-.+|.
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 3555555555533 47899999999999999999999999999999999999999999999955 445667777
Q ss_pred CCC
Q 009003 544 RGK 546 (547)
Q Consensus 544 ~~~ 546 (547)
-|+
T Consensus 1340 vGi 1342 (1958)
T KOG0391|consen 1340 VGI 1342 (1958)
T ss_pred ccc
Confidence 775
No 405
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.45 E-value=1.2 Score=47.87 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
..+.+|+.||+|+|||+.
T Consensus 215 ~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCcceEEECCCCCcHHHH
Confidence 356799999999999965
No 406
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.43 E-value=3.1 Score=40.15 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.0
Q ss_pred cCC-cEEEEccCCChhhHHHH
Q 009003 212 QGK-DVIGAAETGSGKTLAFG 231 (547)
Q Consensus 212 ~~~-dvli~a~TGsGKT~~~~ 231 (547)
.++ -+.++++-|||||+.--
T Consensus 49 d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred cCCceEEEEecCCCchhHHHH
Confidence 455 67899999999997654
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.37 E-value=0.29 Score=46.88 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=12.0
Q ss_pred EEEEccCCChhhHH
Q 009003 216 VIGAAETGSGKTLA 229 (547)
Q Consensus 216 vli~a~TGsGKT~~ 229 (547)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999954
No 408
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.36 E-value=1.1 Score=43.89 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++|+|++|+|||..
T Consensus 35 ~gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM 52 (259)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467889999999999964
No 409
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.34 E-value=4 Score=43.68 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=76.3
Q ss_pred CCcHHHHHHHHHHHh-----c----CCcEEEEccCCChhhHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeE
Q 009003 197 EPTPIQKACIPAAAH-----Q----GKDVIGAAETGSGKTLAFG-LPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLR 266 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~-----~----~~dvli~a~TGsGKT~~~~-lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (547)
.+-|+|.-++-.++- . -..++|.-|-+-|||.... +.+...+... ..+-.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--------------------~~~~~ 120 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--------------------RSGAG 120 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--------------------hcCCc
Confidence 567999999987761 0 1246888899999995433 3333333222 23457
Q ss_pred EEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCc---EEEeChHHHHHHHhcCCCCcccCCCcc
Q 009003 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPE---VVVGTPGRLWELMSGGEKHLVELHTLS 343 (547)
Q Consensus 267 ~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~d---Ilv~TP~~l~~~l~~~~~~~~~l~~l~ 343 (547)
..|++|+.+-+.+.++.++....... ........+.+ |.+.--...+..+.. .....+-.+..
T Consensus 121 ~~i~A~s~~qa~~~F~~ar~mv~~~~-------------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa-~~~~~Dg~~~~ 186 (546)
T COG4626 121 IYILAPSVEQAANSFNPARDMVKRDD-------------DLRDLCNVQTHSRTITHRKTDSTIKAVAA-DPNTVDGLNSV 186 (546)
T ss_pred EEEEeccHHHHHHhhHHHHHHHHhCc-------------chhhhhccccceeEEEecccceeeeeecc-CCCcccCCCcc
Confidence 99999999999999998887654332 00000111111 111111111222322 23334455667
Q ss_pred EEEEeccchhhhcCChHHHHHHHHh
Q 009003 344 FFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 344 ~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
+.|+||.|.....+ ..+..+..-
T Consensus 187 ~~I~DEih~f~~~~--~~~~~~~~g 209 (546)
T COG4626 187 GAIIDELHLFGKQE--DMYSEAKGG 209 (546)
T ss_pred eEEEehhhhhcCHH--HHHHHHHhh
Confidence 99999999875432 444444433
No 410
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.25 E-value=1.2 Score=47.79 Aligned_cols=72 Identities=17% Similarity=0.328 Sum_probs=56.4
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.++||.|+|+.-|..+++.|... ++.+..++|+.........+ ....+|+|||. .+..+ +++.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi~ 309 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAARG----LDIK 309 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccccc----cchh
Confidence 46999999999999999998876 78899999999887655433 24689999994 33433 8888
Q ss_pred CccEEEEec
Q 009003 341 TLSFFVLDE 349 (547)
Q Consensus 341 ~l~~lViDE 349 (547)
.+++||.-.
T Consensus 310 ~v~~VI~~d 318 (460)
T PRK11776 310 ALEAVINYE 318 (460)
T ss_pred cCCeEEEec
Confidence 999888644
No 411
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.24 E-value=1.5 Score=47.16 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=57.1
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+..+||.|+|+..|.+++..|... ++.+..++|+......... ..+..+|||||.- +..+ +++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~-----~~~G----ID~ 292 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA-----FGMG----INK 292 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech-----hhcc----CCc
Confidence 346799999999999999998866 8889999999987665433 2457899999952 2333 888
Q ss_pred CCccEEEEecc
Q 009003 340 HTLSFFVLDEA 350 (547)
Q Consensus 340 ~~l~~lViDEa 350 (547)
..+++||.-..
T Consensus 293 p~V~~VI~~~~ 303 (470)
T TIGR00614 293 PDVRFVIHYSL 303 (470)
T ss_pred ccceEEEEeCC
Confidence 99999886443
No 412
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.07 E-value=1.3 Score=43.37 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=23.7
Q ss_pred ChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHH
Q 009003 321 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366 (547)
Q Consensus 321 TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~ 366 (547)
-|+-|..++.+ |..=++|.|||.|++. ..-.+.+...+
T Consensus 90 K~gDlaaiLt~-------Le~~DVLFIDEIHrl~-~~vEE~LYpaM 127 (332)
T COG2255 90 KPGDLAAILTN-------LEEGDVLFIDEIHRLS-PAVEEVLYPAM 127 (332)
T ss_pred ChhhHHHHHhc-------CCcCCeEEEehhhhcC-hhHHHHhhhhh
Confidence 45666666633 4555899999999985 33333333333
No 413
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.06 E-value=1.4 Score=47.74 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=19.6
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
....+++||||||.|.. .-...+..++...
T Consensus 115 ~~~~KVvIIDEad~Lt~-~A~NALLK~LEEp 144 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK-EAFNALLKTLEEP 144 (535)
T ss_pred cCCeEEEEEECcccCCH-HHHHHHHHHHhhc
Confidence 45678999999998853 2334445555443
No 414
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.02 E-value=2.9 Score=42.41 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHH---hcC---CcEEEEccCCChhhHH
Q 009003 199 TPIQKACIPAAA---HQG---KDVIGAAETGSGKTLA 229 (547)
Q Consensus 199 ~~iQ~~~i~~~l---~~~---~dvli~a~TGsGKT~~ 229 (547)
+|+|...+..+. .+| +-.+++||.|.||+..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~l 40 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQL 40 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHH
Confidence 566666665543 233 3678999999999955
No 415
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.94 E-value=1.1 Score=45.99 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++||||||||..
T Consensus 121 ~~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT 138 (343)
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 467899999999999955
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.92 E-value=1.1 Score=47.33 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.7
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
-+++++++|+|||...
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5789999999999664
No 417
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=0.31 Score=48.15 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
..|+++.+|||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 458999999999999653
No 418
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.85 E-value=1.2 Score=51.35 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.4
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
.++++||||+|||...
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999543
No 419
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.84 E-value=0.81 Score=52.05 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.++.++++||+|+|||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 467899999999999944
No 420
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=2.6 Score=40.62 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCChhhHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~ 230 (547)
+..+-++.-+|+|+|||+..
T Consensus 203 ~pPKGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 34678999999999999653
No 421
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.81 E-value=0.73 Score=50.58 Aligned_cols=46 Identities=37% Similarity=0.452 Sum_probs=30.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHh-cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 189 SIYRLQFKEPTPIQKACIPAAAH-QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 189 ~l~~~~~~~~~~iQ~~~i~~~l~-~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|..+|| .+-|.+.+..++. ...-++++||||||||... ..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3556665 4566666666553 3456789999999999653 3455554
No 422
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.76 E-value=1.1 Score=50.06 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=63.8
Q ss_pred ccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHc-C-CceEEecCCcCHHHHHHHHHHHHhhhhcCCCCCCC
Q 009003 470 EEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKIL-G-IDVWTLHAQMQQRARLKLFSQMITWIRKRPKGDRG 545 (547)
Q Consensus 470 ~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~-g-~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g~~~ 545 (547)
...|.+.+..++... .++.+||.++.+..+.++...|+.. | ..+..+|++++..+|.+.+.+.++|..+.-.|.|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 457888888877633 4678999999999999999999874 5 67999999999999999999999998777777653
No 423
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.70 E-value=2 Score=44.38 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.7
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
+.++++||.|+|||..
T Consensus 40 ~~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 40 QALLFCGPRGVGKTTC 55 (367)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999954
No 424
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.67 E-value=0.83 Score=51.99 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+++.||+|+|||+.
T Consensus 487 ~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999954
No 425
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.65 E-value=1.3 Score=49.36 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=54.9
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
..+||.|+|+.-+.++++.|... ++.+..++|+.........+ ....+|||||. .+..+ +++.
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~arG----IDip 312 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAARG----LDVE 312 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHhcC----CCcc
Confidence 46999999999999999988765 78899999998876654433 25789999994 33443 7888
Q ss_pred CccEEEE
Q 009003 341 TLSFFVL 347 (547)
Q Consensus 341 ~l~~lVi 347 (547)
.+++||.
T Consensus 313 ~V~~VI~ 319 (629)
T PRK11634 313 RISLVVN 319 (629)
T ss_pred cCCEEEE
Confidence 8888875
No 426
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.63 E-value=0.69 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQ 236 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~ 236 (547)
.|.-+.|.+|+|||||... ++++.
T Consensus 54 ~G~iteI~G~~GsGKTtLa-L~~~~ 77 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLA-LHAIA 77 (321)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4678899999999999653 33333
No 427
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.51 E-value=1.7 Score=46.63 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.3
Q ss_pred CCCccEEEEeccchhh
Q 009003 339 LHTLSFFVLDEADRMI 354 (547)
Q Consensus 339 l~~l~~lViDEah~ll 354 (547)
.....++||||||.|.
T Consensus 117 ~~~~KVvIIDEad~Lt 132 (486)
T PRK14953 117 KGKYKVYIIDEAHMLT 132 (486)
T ss_pred cCCeeEEEEEChhhcC
Confidence 4567899999999885
No 428
>PRK10436 hypothetical protein; Provisional
Probab=88.44 E-value=0.71 Score=49.16 Aligned_cols=46 Identities=30% Similarity=0.371 Sum_probs=29.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHh-cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 189 SIYRLQFKEPTPIQKACIPAAAH-QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 189 ~l~~~~~~~~~~iQ~~~i~~~l~-~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|..+|+ .+.|...+..++. .+.-+|++||||||||... ..+|..+
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3445554 4556666655543 4557899999999999653 3455554
No 429
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.31 E-value=0.51 Score=51.48 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=24.4
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
+++-+++|+||+-.-+|......+...+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 6777899999999888877777776666554
No 430
>PRK08506 replicative DNA helicase; Provisional
Probab=88.26 E-value=2.1 Score=45.89 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
.|.-+++.|+||.|||.. ++-++.+
T Consensus 191 ~G~LivIaarpg~GKT~f-al~ia~~ 215 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTL-CLNMALK 215 (472)
T ss_pred CCceEEEEcCCCCChHHH-HHHHHHH
Confidence 466788999999999954 4444433
No 431
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.18 E-value=1.1 Score=49.32 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
+++-.++|+|||-.-+|......+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 55668999999999998888888888776554
No 432
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.97 E-value=1.7 Score=45.35 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.++++||+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 46799999999999955
No 433
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.94 E-value=0.92 Score=50.09 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=14.6
Q ss_pred CcEEEEccCCChhhHHHH
Q 009003 214 KDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~ 231 (547)
+.+|++||.|+|||.+..
T Consensus 39 ha~Lf~Gp~GvGKttlA~ 56 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAAR 56 (620)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 358899999999996643
No 434
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=87.94 E-value=1.4 Score=46.53 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=64.9
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
..|.+||.+.|..-|.-++..|.+. +++++.++||.........+. +..+|+|||.-. . ..++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA-----g----RGID 582 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA-----G----RGID 582 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc-----c----cCCC
Confidence 3567999999999888888877776 899999999998876654443 368999999632 2 2388
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCCCCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 373 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~ 373 (547)
..++++||= ..+...+...+.++..++
T Consensus 583 IpnVSlVin--------ydmaksieDYtHRIGRTg 609 (673)
T KOG0333|consen 583 IPNVSLVIN--------YDMAKSIEDYTHRIGRTG 609 (673)
T ss_pred CCccceeee--------cchhhhHHHHHHHhcccc
Confidence 889887652 345556666666665443
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.93 E-value=0.7 Score=34.31 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.8
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
|...++.+++|||||. ++=+++.+
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHH
Confidence 4578999999999994 44445544
No 436
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.93 E-value=1.7 Score=46.72 Aligned_cols=72 Identities=14% Similarity=0.292 Sum_probs=55.5
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
..++||.|+++.-|..+++.|... ++.+..++|+.........+ .+...|||||. .+..+ +++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~~G----IDi 401 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAGRG----IHI 401 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----Ccc
Confidence 348999999999999998888655 78888899998876654433 34689999993 33444 889
Q ss_pred CCccEEEEe
Q 009003 340 HTLSFFVLD 348 (547)
Q Consensus 340 ~~l~~lViD 348 (547)
..++++|.-
T Consensus 402 ~~v~~VI~~ 410 (475)
T PRK01297 402 DGISHVINF 410 (475)
T ss_pred cCCCEEEEe
Confidence 999988864
No 437
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.91 E-value=1.7 Score=49.52 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=12.9
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.++++||||+|||..
T Consensus 486 ~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 486 SFLFTGPTGVGKTEL 500 (731)
T ss_pred eEEEECCCCccHHHH
Confidence 478999999999944
No 438
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=87.77 E-value=0.64 Score=51.56 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=42.5
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
...+++.||||||||..+++|-+-. .+.-++|+=|-.|+...+....+++ |
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~-------------------------~~gS~VV~DpKgEl~~~Ta~~R~~~----G 274 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK-------------------------WGGPLVVLDPSTEVAPMVSEHRRDA----G 274 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc-------------------------CCCCEEEEeCcHHHHHHHHHHHHHC----C
Confidence 4589999999999999999995432 1224777779989877666655444 6
Q ss_pred cEEEEEEc
Q 009003 293 VRVVPIVG 300 (547)
Q Consensus 293 ~~v~~~~g 300 (547)
.+|.++..
T Consensus 275 ~~V~vfdP 282 (641)
T PRK13822 275 REVIVLDP 282 (641)
T ss_pred CeEEEEeC
Confidence 66666553
No 439
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.67 E-value=2.2 Score=48.79 Aligned_cols=17 Identities=29% Similarity=0.263 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..++++||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999954
No 440
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.49 E-value=3.3 Score=48.32 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=21.3
Q ss_pred cEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 343 SFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 343 ~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
-+||||++|.+-+......+..++..++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 4899999998854444567778888776
No 441
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.44 E-value=1 Score=46.44 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.+.-++++||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5778999999999999542 3344443
No 442
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.44 E-value=2.5 Score=47.98 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
..++|+.||+|+|||..
T Consensus 207 ~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_pred CCCeEEECCCCCCHHHH
Confidence 56899999999999965
No 443
>PRK05973 replicative DNA helicase; Provisional
Probab=87.38 E-value=1 Score=43.36 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++|.|++|+|||..
T Consensus 63 ~Gsl~LIaG~PG~GKT~l 80 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLL 80 (237)
T ss_pred CCCEEEEEeCCCCCHHHH
Confidence 577889999999999955
No 444
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.30 E-value=0.76 Score=49.38 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHhcCC-cEEEEccCCChhhHHHHHHHHHHH
Q 009003 189 SIYRLQFKEPTPIQKACIPAAAHQGK-DVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 189 ~l~~~~~~~~~~iQ~~~i~~~l~~~~-dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|..+|+ ++-|.+.+..++...+ -++++||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3455665 5667777766664444 4689999999999553 3344543
No 445
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.28 E-value=3 Score=47.23 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=36.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCc------eEEecCCcCHHHHHHHHHHHHhh
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGID------VWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~------v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
.++.+|||++|-...+.++..+...|+. -.++.-.-...++..++++|+..
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~ 577 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQA 577 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHH
Confidence 3689999999999999999988765320 11222222226889999999865
No 446
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=87.24 E-value=2.6 Score=48.10 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=41.1
Q ss_pred EccccchHHHHHHHH-Hhc-CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCC
Q 009003 467 ECKEEDKDAYLYYIL-SVH-GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQ 519 (547)
Q Consensus 467 ~~~~~~k~~~l~~ll-~~~-~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~ 519 (547)
......|..+++.-+ ..+ .+.++||-|.|+...+.|+..|...|+...++++.
T Consensus 547 y~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak 601 (970)
T PRK12899 547 YMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAK 601 (970)
T ss_pred ecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccc
Confidence 333445665555444 344 45689999999999999999999999999999987
No 447
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.23 E-value=1.5 Score=41.83 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHh
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGV 287 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~ 287 (547)
.|.-+++.|++|+|||...+--+.+.+. .+-+++++.-- +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~-----------------------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK-----------------------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------------------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 3667899999999998542222222221 13357776543 4566777777665
No 448
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=87.21 E-value=6.6 Score=41.86 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=20.9
Q ss_pred CCcHHHHHHHHHH----Hh---cCC--cEEEEccCCChhhHH
Q 009003 197 EPTPIQKACIPAA----AH---QGK--DVIGAAETGSGKTLA 229 (547)
Q Consensus 197 ~~~~iQ~~~i~~~----l~---~~~--dvli~a~TGsGKT~~ 229 (547)
.|+.-|.++...+ +. .|. -|+.+|+||||||..
T Consensus 58 ~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTyt 99 (607)
T KOG0240|consen 58 SPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYT 99 (607)
T ss_pred CCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCccee
Confidence 6676666554332 21 343 467788999999944
No 449
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.07 E-value=6.5 Score=39.72 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHH---hcCC---cEEEEccCCChhhHH
Q 009003 198 PTPIQKACIPAAA---HQGK---DVIGAAETGSGKTLA 229 (547)
Q Consensus 198 ~~~iQ~~~i~~~l---~~~~---dvli~a~TGsGKT~~ 229 (547)
+.|+|...+..+. .+++ -.+++||.|.||+..
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~l 41 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESL 41 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH
Confidence 4567766665543 2333 689999999999954
No 450
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.89 E-value=11 Score=34.02 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=24.0
Q ss_pred CCCccEEEEeccchhhhcCC--hHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~--~~~l~~i~~~l~ 370 (547)
...+++||+||+=..+..++ .+.+..+++.-|
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp 126 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP 126 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC
Confidence 56789999999998877766 456666666544
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.86 E-value=0.92 Score=42.51 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=13.1
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-++++||||||||..
T Consensus 3 lilI~GptGSGKTTl 17 (198)
T cd01131 3 LVLVTGPTGSGKSTT 17 (198)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999965
No 452
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=86.72 E-value=1.6 Score=42.75 Aligned_cols=126 Identities=23% Similarity=0.221 Sum_probs=61.6
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC---HHHHHHHHHHHHHhh
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT---RELALQVTDHLKGVA 288 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt---r~La~qv~~~l~~~~ 288 (547)
.|.=+++.|+||.|||.. ++-+..++... .+..++|++.= .+++.++...+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~-~l~ia~~~a~~---------------------~~~~vly~SlEm~~~~l~~R~la~~s--- 72 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAF-ALQIALNAALN---------------------GGYPVLYFSLEMSEEELAARLLARLS--- 72 (259)
T ss_dssp TT-EEEEEESTTSSHHHH-HHHHHHHHHHT---------------------TSSEEEEEESSS-HHHHHHHHHHHHH---
T ss_pred cCcEEEEEecccCCchHH-HHHHHHHHHHh---------------------cCCeEEEEcCCCCHHHHHHHHHHHhh---
Confidence 456788999999999955 44444433221 13578888742 444444433332
Q ss_pred cCCCcEEEEEE-cCCCHHHHHH------HhcCCCcEEEe----ChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc-
Q 009003 289 KGINVRVVPIV-GGMSTEKQER------LLKARPEVVVG----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN- 356 (547)
Q Consensus 289 ~~~~~~v~~~~-g~~~~~~~~~------~~~~~~dIlv~----TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~- 356 (547)
.+.+.- +. |......... .+....-++.. |+..+...+..- ......+.+||||=.|.|-..
T Consensus 73 -~v~~~~--i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~---~~~~~~~~~v~IDyl~ll~~~~ 146 (259)
T PF03796_consen 73 -GVPYNK--IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRL---KREGKKVDVVFIDYLQLLKSED 146 (259)
T ss_dssp -TSTHHH--HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHH---HHHSTTEEEEEEEEGGGSBTSC
T ss_pred -cchhhh--hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHH---HhhccCCCEEEechHHHhcCCC
Confidence 222111 11 2222222111 12222222333 334554444321 112367899999999988642
Q ss_pred ---CChHHHHHHHHh
Q 009003 357 ---GHFRELQSIIDM 368 (547)
Q Consensus 357 ---~~~~~l~~i~~~ 368 (547)
+....+..+...
T Consensus 147 ~~~~~~~~~~~i~~~ 161 (259)
T PF03796_consen 147 SSDNRRQEIGEISRE 161 (259)
T ss_dssp SSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 334555554433
No 453
>PRK09354 recA recombinase A; Provisional
Probab=86.71 E-value=1 Score=45.95 Aligned_cols=21 Identities=29% Similarity=0.077 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCChhhHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~l 232 (547)
.|+-+.|.+|+|||||...+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~ 79 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALH 79 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 366788999999999965433
No 454
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=86.70 E-value=2.3 Score=47.45 Aligned_cols=79 Identities=22% Similarity=0.391 Sum_probs=57.2
Q ss_pred CeEEEEEccCHH--------HHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHHHHHHhc
Q 009003 264 HLRALIITPTRE--------LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 264 ~~~~lil~Ptr~--------La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~~ 331 (547)
+.+++|++|+.+ -|.++++.+.... .++.+..++|+++.......+. +..+|||||. .+..
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 520 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEV 520 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeec
Confidence 457999999863 3455666665543 4678999999998866544332 4789999995 3344
Q ss_pred CCCCcccCCCccEEEEeccchh
Q 009003 332 GEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~l 353 (547)
+ +++.+++++|+..+++.
T Consensus 521 G----vDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 521 G----VDVPNATVMVIEDAERF 538 (630)
T ss_pred C----cccCCCcEEEEeCCCcC
Confidence 3 88999999999888864
No 455
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=86.63 E-value=6.7 Score=44.32 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-cCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 477 LYYILSVHGQGRTIVFCTSIAALRHISSLLKI-LGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 477 l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~-~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
+..++. ..+++|||++|....+.++..|.. .++.+ ..+|. ..|.+++++|++-
T Consensus 527 i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~ 580 (697)
T PRK11747 527 LPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKR 580 (697)
T ss_pred HHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHH
Confidence 334444 456699999999999999999874 34443 34564 3578899989863
No 456
>PRK07004 replicative DNA helicase; Provisional
Probab=86.61 E-value=3.9 Score=43.67 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQ 236 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~ 236 (547)
.|.-+++.|.||+|||.. ++-+..
T Consensus 212 ~g~liviaarpg~GKT~~-al~ia~ 235 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAF-SMNIGE 235 (460)
T ss_pred CCceEEEEeCCCCCccHH-HHHHHH
Confidence 566788999999999954 443433
No 457
>PTZ00424 helicase 45; Provisional
Probab=86.58 E-value=2.6 Score=44.10 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=54.8
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
..++||.|+|+.-|..+.+.+... ++.+..++|+.....+...+ .+..+|||||. .+..+ +++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~~G----iDi 333 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLARG----IDV 333 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cccCC----cCc
Confidence 357999999999998888887754 78899999999876654432 24789999994 33443 888
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 334 p~v~~VI~ 341 (401)
T PTZ00424 334 QQVSLVIN 341 (401)
T ss_pred ccCCEEEE
Confidence 99998885
No 458
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.53 E-value=0.46 Score=43.50 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 307 QERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 307 ~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
..+.....+||||++..-|+.-........+.+ .-.+|||||||.|.+
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHH
Confidence 344455678999999988764432111001223 336899999999964
No 459
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.52 E-value=1.2 Score=51.38 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.8
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.++++||||+|||..
T Consensus 541 ~~lf~Gp~GvGKt~l 555 (821)
T CHL00095 541 SFLFSGPTGVGKTEL 555 (821)
T ss_pred EEEEECCCCCcHHHH
Confidence 468999999999944
No 460
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.27 E-value=2.9 Score=42.68 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHHh---cC---CcEEEEccCCChhhHH
Q 009003 198 PTPIQKACIPAAAH---QG---KDVIGAAETGSGKTLA 229 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~---~~---~dvli~a~TGsGKT~~ 229 (547)
++|||...+..+.. +| +-.|++||.|.||+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~l 40 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHH
Confidence 45677766665532 23 3678999999999955
No 461
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=86.26 E-value=0.81 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCChhhHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIM 235 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l 235 (547)
.|+-+.+.+|+|||||.. +++++
T Consensus 54 ~G~iteI~Gp~GsGKTtL-al~~~ 76 (325)
T cd00983 54 KGRIIEIYGPESSGKTTL-ALHAI 76 (325)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHH
Confidence 366788999999999955 34433
No 462
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.24 E-value=2.7 Score=46.63 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=53.1
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+|+..|.+++..|... ++.+..++|+.+.......+ .+..+|||||.- +..+ +++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a-----~~~G----ID~ 290 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA-----FGMG----IDK 290 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech-----hhcc----CcC
Confidence 346899999999999999988765 78889999998876554432 357899999942 2222 667
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
.++++||.
T Consensus 291 p~v~~VI~ 298 (591)
T TIGR01389 291 PNVRFVIH 298 (591)
T ss_pred CCCCEEEE
Confidence 77877764
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.19 E-value=2.7 Score=45.28 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=34.3
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHh
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGV 287 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~ 287 (547)
.|.-+++.+|+|+|||...+ ++++..- ..+-+++|++ +-|-..|+...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~----~f~~~~~-------------------~~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVS----KFLENAC-------------------ANKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHH----HHHHHHH-------------------HCCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 35678999999999996422 2222221 1134688877 567777888887766
No 464
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=86.15 E-value=2.1 Score=47.49 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=53.4
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+..+||.|+|+.-|.+++..|... ++.+..++++.+.......+ ....+|||||.- +..+ +++
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-----~~~G----IDi 302 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-----FGMG----INK 302 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-----hhcc----CCC
Confidence 346899999999999999988876 78899999999876654333 356899999952 2222 667
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
.++++||.
T Consensus 303 p~V~~VI~ 310 (607)
T PRK11057 303 PNVRFVVH 310 (607)
T ss_pred CCcCEEEE
Confidence 77777764
No 465
>PRK06904 replicative DNA helicase; Validated
Probab=86.09 E-value=5 Score=42.99 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=57.3
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcC
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKG 290 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~ 290 (547)
..|.=+++.|.||.|||. |++-++..+... .+..++|++. -.-..|+...+.....+
T Consensus 219 ~~G~LiiIaarPg~GKTa-falnia~~~a~~---------------------~g~~Vl~fSl-EMs~~ql~~Rlla~~s~ 275 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTT-FAMNLCENAAMA---------------------SEKPVLVFSL-EMPAEQIMMRMLASLSR 275 (472)
T ss_pred CCCcEEEEEeCCCCChHH-HHHHHHHHHHHh---------------------cCCeEEEEec-cCCHHHHHHHHHHhhCC
Confidence 456677889999999995 444444333211 1234666642 23344555554433333
Q ss_pred CCcEEEEE-Ec-CCCHHHHH------HHhcCCCcEEEe-----ChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 291 INVRVVPI-VG-GMSTEKQE------RLLKARPEVVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 291 ~~~~v~~~-~g-~~~~~~~~------~~~~~~~dIlv~-----TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
+... .+ .| ..+..... ..+.....+.|. |+..+...+..- ...-..+++||||-.+.|.
T Consensus 276 v~~~--~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~---~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 276 VDQT--KIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRV---YRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CCHH--HhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH---HHhCCCCCEEEEecHHhcC
Confidence 2222 12 23 23332221 122233445552 455554333211 0112357899999998775
No 466
>PRK13764 ATPase; Provisional
Probab=86.06 E-value=0.91 Score=49.71 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHhcCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 208 AAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 208 ~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.+.....+++++||||||||.. +-.++.++
T Consensus 252 ~l~~~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 252 RLEERAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred HHHhcCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3334577899999999999954 33444544
No 467
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.04 E-value=1.9 Score=48.58 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=57.1
Q ss_pred cchHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHH-cCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCCCC
Q 009003 471 EDKDAYLYYILSV--HGQGRTIVFCTSIAALRHISSLLKI-LGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKGDR 544 (547)
Q Consensus 471 ~~k~~~l~~ll~~--~~~~k~LVF~~s~~~a~~L~~~L~~-~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g~~ 544 (547)
..|......++.. ..++++||.++++..+.+++..|+. .|..+..+||+++..+|.+++.+..+|..+...|.+
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 4566554444321 2356899999999999999999987 588999999999999999998888877655555544
No 468
>CHL00176 ftsH cell division protein; Validated
Probab=85.99 E-value=2.6 Score=46.89 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+|+.||+|+|||+.
T Consensus 216 p~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLL 232 (638)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999954
No 469
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=85.89 E-value=4.2 Score=41.90 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=51.7
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCcc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLS 343 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~ 343 (547)
+.++||+++|+.-|..++..|+.. +.++.+..++|........+.. ..+|+|||. .+..+ +++..+
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~rG----iDi~~~- 337 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDVG----VDFKRD- 337 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhcc----cCCCCc-
Confidence 458999999999999999999864 3356777888888876654433 578999997 22333 666655
Q ss_pred EEEEe
Q 009003 344 FFVLD 348 (547)
Q Consensus 344 ~lViD 348 (547)
++|++
T Consensus 338 ~vi~~ 342 (357)
T TIGR03158 338 WLIFS 342 (357)
T ss_pred eEEEC
Confidence 56664
No 470
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.86 E-value=2.1 Score=41.66 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhhH
Q 009003 212 QGKDVIGAAETGSGKTL 228 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~ 228 (547)
.|+.+++.|+.|+|||.
T Consensus 15 ~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 15 KGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 68999999999999994
No 471
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=85.86 E-value=0.83 Score=50.77 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=40.7
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
...++++||||||||.++++|-|-.. +..+||+=|-.|+.........+. .|
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~-------------------------~~S~VV~D~KGE~~~~Tag~R~~~---~G 226 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW-------------------------GHSSVITDLKGELWALTAGWRQKH---AK 226 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC-------------------------CCCEEEEeCcHHHHHHHHHHHHHh---CC
Confidence 36899999999999999999966421 235888888888875554443222 35
Q ss_pred cEEEEEE
Q 009003 293 VRVVPIV 299 (547)
Q Consensus 293 ~~v~~~~ 299 (547)
.+|.++.
T Consensus 227 ~~V~~fd 233 (636)
T PRK13880 227 NKVLRFE 233 (636)
T ss_pred CeEEEEe
Confidence 5555544
No 472
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.86 E-value=2 Score=46.44 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=56.3
Q ss_pred cchHHHHHHHHH--hcCCCcEEEEeCChHHHHHHHHHHHH-cCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCCCC
Q 009003 471 EDKDAYLYYILS--VHGQGRTIVFCTSIAALRHISSLLKI-LGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKGDR 544 (547)
Q Consensus 471 ~~k~~~l~~ll~--~~~~~k~LVF~~s~~~a~~L~~~L~~-~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g~~ 544 (547)
..|..+...++. ...++++||.++++.-+.+++..|+. .|..+..+||+++..+|.++..+..+|..+...|.+
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTr 84 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTR 84 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECCh
Confidence 345555444442 12466899999999999999999986 488899999999999999998888777655545543
No 473
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=85.76 E-value=3.1 Score=45.30 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=55.3
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
.+++||.++|+.-|..+.+.+... .++++..++|+.........+ .+...|||||. .+..+ +++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~rG----iDi 434 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLGRG----VDL 434 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhhcc----CCc
Confidence 457999999999998888777642 478889999999876654433 35789999996 34444 889
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
.++++||.
T Consensus 435 p~v~~VI~ 442 (518)
T PLN00206 435 LRVRQVII 442 (518)
T ss_pred ccCCEEEE
Confidence 99999886
No 474
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=85.75 E-value=2.8 Score=35.70 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=34.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC--ceEEecCCcCHHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI--DVWTLHAQMQQRA 524 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~--~v~~lhg~m~~~e 524 (547)
...+++|||.+-..+...+..|+..|+ ++..+.|+|....
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~ 112 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWA 112 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHH
Confidence 457899999998889899999999999 6999999987553
No 475
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=85.65 E-value=3.6 Score=43.44 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=17.7
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIM 235 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l 235 (547)
..|.-+++.|+||+|||.. ++-+.
T Consensus 192 ~~g~liviag~pg~GKT~~-al~ia 215 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTL-ALNIA 215 (421)
T ss_pred CCCceEEEEeCCCCCHHHH-HHHHH
Confidence 3577789999999999954 34333
No 476
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=85.57 E-value=3.2 Score=42.97 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhhH
Q 009003 212 QGKDVIGAAETGSGKTL 228 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~ 228 (547)
.|+.++|.||.|+|||.
T Consensus 168 kGQR~lIvgppGvGKTT 184 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTV 184 (416)
T ss_pred cCceEEEeCCCCCChhH
Confidence 58999999999999994
No 477
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.35 E-value=3 Score=47.38 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=13.6
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
.++++||||+|||...
T Consensus 490 ~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999543
No 478
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.32 E-value=2.3 Score=46.52 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=14.5
Q ss_pred cEEEEccCCChhhHHHHH
Q 009003 215 DVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~l 232 (547)
-+|++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999966433
No 479
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=85.23 E-value=5.3 Score=40.61 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=66.2
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcc
Q 009003 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLV 337 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~ 337 (547)
.+.|.+||.+-.+.=+..+++.+.-. |+.++.++||.+..+....+ .+.-||+|+|.-. + +.+
T Consensus 419 KT~PpVLIFaEkK~DVD~IhEYLLlK----GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVA-----S----KGL 485 (610)
T KOG0341|consen 419 KTSPPVLIFAEKKADVDDIHEYLLLK----GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVA-----S----KGL 485 (610)
T ss_pred cCCCceEEEeccccChHHHHHHHHHc----cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecch-----h----ccC
Confidence 45788999999999999998887654 89999999999887665433 2467999999532 2 236
Q ss_pred cCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCC
Q 009003 338 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNG 374 (547)
Q Consensus 338 ~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~ 374 (547)
++..+..+| ...+-..+++...++..++.
T Consensus 486 DFp~iqHVI--------NyDMP~eIENYVHRIGRTGR 514 (610)
T KOG0341|consen 486 DFPDIQHVI--------NYDMPEEIENYVHRIGRTGR 514 (610)
T ss_pred CCccchhhc--------cCCChHHHHHHHHHhcccCC
Confidence 777775443 34456677777777765443
No 480
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.21 E-value=3.7 Score=45.31 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=17.9
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHH
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIID 367 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~ 367 (547)
++-.+|||||+|--. .++.+.|..++.
T Consensus 386 srP~CLViDEIDGa~-~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAP-RAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCc-HHHHHHHHHHHH
Confidence 455799999999654 344555555554
No 481
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=85.14 E-value=1.8 Score=46.20 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.1
Q ss_pred CcEEEEccCCChhhHHH
Q 009003 214 KDVIGAAETGSGKTLAF 230 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~ 230 (547)
+.+|++||.|+|||.+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLA 56 (451)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 45789999999999654
No 482
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=85.11 E-value=1.3 Score=49.50 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=64.9
Q ss_pred cccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHH-cCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCCCC
Q 009003 469 KEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKI-LGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKGDR 544 (547)
Q Consensus 469 ~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~-~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g~~ 544 (547)
..+.|.+++..++... .++.+||.++-+....++...|+. .|.++.++|++++..+|.....+.++|..+.-.|.|
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 4577888888887633 467999999999999999998877 489999999999999999999999999888777655
No 483
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=85.02 E-value=1.1 Score=49.47 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=41.2
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCc
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~ 293 (547)
..+++.||||||||.++++|-+-. .+.-+||+=|..|++......-++.+ +.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~-------------------------~~gS~VV~DpKgE~~~~Ta~~R~~~G---g~ 263 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALK-------------------------YGGPLVCLDPSTEVAPMVCEHRRQAG---NR 263 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhc-------------------------CCCCEEEEEChHHHHHHHHHHHHHcC---CC
Confidence 589999999999999999995321 12247888888888776665554442 15
Q ss_pred EEEEEEc
Q 009003 294 RVVPIVG 300 (547)
Q Consensus 294 ~v~~~~g 300 (547)
+|.++..
T Consensus 264 ~V~vfdP 270 (623)
T TIGR02767 264 KVIVLDP 270 (623)
T ss_pred cEEEEeC
Confidence 5555543
No 484
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=84.90 E-value=5.8 Score=44.44 Aligned_cols=92 Identities=25% Similarity=0.412 Sum_probs=64.5
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.+.++||+|+|+..|.++.+.|... ++.+..++|+.........+ .+..+|+|||- .+..+ ++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~rG----fd 511 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLREG----LD 511 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHhCC----cc
Confidence 3568999999999999998888765 88898899987764433322 34688999882 34444 88
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
+..++++|+=+++.. ||......++..+.
T Consensus 512 lp~v~lVii~d~eif---G~~~~~~~yiqr~G 540 (652)
T PRK05298 512 IPEVSLVAILDADKE---GFLRSERSLIQTIG 540 (652)
T ss_pred ccCCcEEEEeCCccc---ccCCCHHHHHHHhc
Confidence 999999988777743 33333334444444
No 485
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=84.79 E-value=3.7 Score=42.62 Aligned_cols=19 Identities=42% Similarity=0.504 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
.+..|++.++||+||++..
T Consensus 100 ~~~~vLi~GetGtGKel~A 118 (403)
T COG1221 100 SGLPVLIIGETGTGKELFA 118 (403)
T ss_pred CCCcEEEecCCCccHHHHH
Confidence 6889999999999999653
No 486
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=84.70 E-value=1.6 Score=51.99 Aligned_cols=59 Identities=27% Similarity=0.446 Sum_probs=41.3
Q ss_pred HHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHH
Q 009003 209 AAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 285 (547)
Q Consensus 209 ~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~ 285 (547)
+...+.+++|.|..|||||.+...-++..|+... +...-++|||+.|+.-+..+...+.
T Consensus 12 ~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------------------~~~v~~ILvvTFT~aAa~Emk~RI~ 70 (1139)
T COG1074 12 ASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGG------------------PLDVDEILVVTFTKAAAAEMKERIR 70 (1139)
T ss_pred hcCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------------------CCChhHeeeeeccHHHHHHHHHHHH
Confidence 3346789999999999999776665666655421 1233479999999866666555554
No 487
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=84.57 E-value=1.7 Score=34.73 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=33.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
+..++++||.+-..+...+..|+..|+++..+.|++..
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~~ 87 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKT 87 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHHH
Confidence 45689999998778889999999999999999999864
No 488
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.57 E-value=1.2 Score=49.70 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=36.1
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKG 286 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~ 286 (547)
..++++.||||||||.++++|-|-.. ..-+||+=|--|+.........+
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~-------------------------~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW-------------------------PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC-------------------------CCCEEEEeCcchHHHHHHHHHHh
Confidence 46899999999999999999965432 12477777887876665555444
No 489
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.55 E-value=17 Score=36.72 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCcccCCCc-cEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 324 RLWELMSGGEKHLVELHTL-SFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 324 ~l~~~l~~~~~~~~~l~~l-~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
.|+..+..+ -..++. -++|+||.|....+...-.+..+++.-.
T Consensus 123 ~lL~~L~~~----~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq 166 (408)
T KOG2228|consen 123 KLLEALKKG----DETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHhcC----CCCCCceEEEEeehhhccccchhhHHHHHHHHHHh
Confidence 455555443 222333 4789999998866666666677766543
No 490
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=84.53 E-value=0.92 Score=41.74 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=23.3
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
..-+++++||...-++......+..++..+
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 456899999999988877777776666654
No 491
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=84.46 E-value=3.2 Score=39.43 Aligned_cols=21 Identities=33% Similarity=0.151 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCChhhHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~l 232 (547)
.|.-+.+.|++|+|||...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ 38 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQ 38 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHH
Confidence 366788999999999965443
No 492
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=84.46 E-value=10 Score=34.56 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=12.1
Q ss_pred EEEEccCCChhhHH
Q 009003 216 VIGAAETGSGKTLA 229 (547)
Q Consensus 216 vli~a~TGsGKT~~ 229 (547)
++|.|++|||||..
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 58899999999954
No 493
>PRK13695 putative NTPase; Provisional
Probab=84.36 E-value=13 Score=33.73 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.0
Q ss_pred cEEEEccCCChhhHHHH
Q 009003 215 DVIGAAETGSGKTLAFG 231 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~ 231 (547)
.+++.+++|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999996543
No 494
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.34 E-value=1.5 Score=48.49 Aligned_cols=29 Identities=10% Similarity=0.390 Sum_probs=18.9
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
....+++||||||.|.. .-...+..++..
T Consensus 119 ~~~~KVvIIdea~~Ls~-~a~naLLK~LEe 147 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ-AAFNAFLKTLEE 147 (614)
T ss_pred cCCcEEEEEECcccCCH-HHHHHHHHHHhC
Confidence 45778999999999853 223344444443
No 495
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=84.33 E-value=12 Score=41.62 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-CCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 476 YLYYILSVHGQGRTIVFCTSIAALRHISSLLKIL-GIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 476 ~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~-g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
.+..++.. ..|+++|.++|...++.++..|... .+. .++.|..+ .|..++++|+.-
T Consensus 461 ~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~ 517 (636)
T TIGR03117 461 STAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLAL 517 (636)
T ss_pred HHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHh
Confidence 34444433 4789999999999999999999663 344 44456443 467789999884
No 496
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.15 E-value=13 Score=33.86 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCCccEEEEeccchhhhcCC--hHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~--~~~l~~i~~~l~ 370 (547)
-..+++||+||+-..+..++ .+.+..+++.-|
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp 128 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERP 128 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC
Confidence 35789999999998887777 456666665544
No 497
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.08 E-value=5.8 Score=44.00 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
++-+++.||+|+|||.++
T Consensus 110 ~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTI 127 (637)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445899999999999653
No 498
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=83.82 E-value=4.9 Score=37.60 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=23.1
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
.+-+++|+||...-++......+..++..+
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 566899999999988877666676666554
No 499
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=83.73 E-value=1.4 Score=45.89 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=20.1
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEE 241 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~ 241 (547)
..+++++.|.||||||. ++.+++..+...
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~~ 42 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRAR 42 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHHT
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHHc
Confidence 36799999999999996 456666666443
No 500
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=83.71 E-value=0.81 Score=39.81 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.0
Q ss_pred HHhcCCcEEEEccCCChhhH
Q 009003 209 AAHQGKDVIGAAETGSGKTL 228 (547)
Q Consensus 209 ~l~~~~dvli~a~TGsGKT~ 228 (547)
.+..+.-+++.|+.|+|||.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTt 37 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTT 37 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHH
Confidence 34456778899999999994
Done!