Query 009003
Match_columns 547
No_of_seqs 453 out of 2482
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 16:37:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.7E-45 1.3E-49 386.0 36.4 303 169-538 50-352 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.9E-41 6.4E-46 355.6 37.2 318 169-538 9-328 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 7.8E-41 2.7E-45 350.3 33.8 292 174-538 36-328 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.6E-39 5.4E-44 340.5 33.7 294 172-538 37-332 (414)
5 1xti_A Probable ATP-dependent 100.0 6.8E-39 2.3E-43 333.1 35.4 291 175-538 8-302 (391)
6 1s2m_A Putative ATP-dependent 100.0 4.8E-39 1.7E-43 335.5 34.1 291 174-538 20-310 (400)
7 3fht_A ATP-dependent RNA helic 100.0 2.7E-38 9.3E-43 330.7 33.8 292 173-538 23-318 (412)
8 3pey_A ATP-dependent RNA helic 100.0 2.7E-38 9.3E-43 328.5 31.6 288 174-538 4-295 (395)
9 1hv8_A Putative ATP-dependent 100.0 1.3E-37 4.4E-42 320.2 34.8 286 174-538 5-290 (367)
10 3fmp_B ATP-dependent RNA helic 100.0 1.4E-39 4.7E-44 348.0 20.0 294 173-540 90-387 (479)
11 1fuu_A Yeast initiation factor 100.0 4.9E-39 1.7E-43 334.3 23.1 292 173-538 19-311 (394)
12 3sqw_A ATP-dependent RNA helic 100.0 5.2E-38 1.8E-42 343.4 30.4 299 182-538 28-343 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 2.3E-37 8E-42 337.4 30.9 300 181-538 78-394 (563)
14 2z0m_A 337AA long hypothetical 100.0 4E-35 1.4E-39 298.1 31.9 268 182-538 1-268 (337)
15 3l9o_A ATP-dependent RNA helic 100.0 1.1E-36 3.7E-41 351.4 21.9 302 175-538 162-532 (1108)
16 3fe2_A Probable ATP-dependent 100.0 2.9E-35 9.9E-40 285.8 22.4 196 169-407 23-218 (242)
17 2v1x_A ATP-dependent DNA helic 100.0 2.8E-34 9.4E-39 312.4 30.5 278 178-538 24-319 (591)
18 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-34 4.8E-39 311.4 27.0 278 174-538 1-288 (523)
19 3iuy_A Probable ATP-dependent 100.0 1.8E-34 6.2E-39 277.5 21.2 197 168-407 12-209 (228)
20 3fho_A ATP-dependent RNA helic 100.0 2.6E-35 8.8E-40 316.7 16.9 289 174-539 118-410 (508)
21 3oiy_A Reverse gyrase helicase 100.0 3.1E-34 1.1E-38 300.7 22.5 275 186-542 10-303 (414)
22 3fmo_B ATP-dependent RNA helic 100.0 3.5E-34 1.2E-38 286.8 21.2 185 173-407 90-278 (300)
23 3ber_A Probable ATP-dependent 100.0 1.2E-33 4E-38 275.6 24.0 187 174-407 42-228 (249)
24 1wrb_A DJVLGB; RNA helicase, D 100.0 4.6E-34 1.6E-38 279.2 20.1 200 173-407 21-220 (253)
25 3ly5_A ATP-dependent RNA helic 100.0 1.1E-33 3.8E-38 277.9 22.0 190 175-407 52-243 (262)
26 3bor_A Human initiation factor 100.0 1.8E-33 6.1E-38 272.3 22.6 190 170-407 25-215 (237)
27 2pl3_A Probable ATP-dependent 100.0 3.3E-33 1.1E-37 270.2 24.1 191 173-407 23-213 (236)
28 1vec_A ATP-dependent RNA helic 100.0 6.4E-33 2.2E-37 262.2 25.2 185 175-407 3-188 (206)
29 1q0u_A Bstdead; DEAD protein, 100.0 2E-33 6.9E-38 268.5 21.0 185 175-407 4-192 (219)
30 1qde_A EIF4A, translation init 100.0 8.6E-33 2.9E-37 264.9 23.8 189 170-407 9-197 (224)
31 2oxc_A Probable ATP-dependent 100.0 9.4E-33 3.2E-37 266.0 24.0 188 171-407 20-209 (230)
32 2zj8_A DNA helicase, putative 100.0 6E-33 2.1E-37 310.8 25.5 283 176-538 2-322 (720)
33 2va8_A SSO2462, SKI2-type heli 100.0 9.2E-33 3.1E-37 309.3 26.4 290 174-538 7-340 (715)
34 2gxq_A Heat resistant RNA depe 100.0 2.2E-32 7.5E-37 258.7 20.9 185 176-407 2-186 (207)
35 3dkp_A Probable ATP-dependent 100.0 1.5E-32 5.2E-37 267.0 19.2 194 170-407 20-221 (245)
36 2p6r_A Afuhel308 helicase; pro 100.0 1.7E-32 5.9E-37 306.3 21.6 286 176-538 2-324 (702)
37 4a2p_A RIG-I, retinoic acid in 100.0 2.1E-32 7.2E-37 297.4 20.8 173 194-408 4-178 (556)
38 1t6n_A Probable ATP-dependent 100.0 9.7E-32 3.3E-36 256.9 22.5 188 173-408 12-202 (220)
39 4ddu_A Reverse gyrase; topoiso 100.0 9.6E-32 3.3E-36 310.1 25.9 270 192-542 74-360 (1104)
40 1tf5_A Preprotein translocase 100.0 2.7E-32 9.3E-37 297.8 19.9 307 192-547 79-495 (844)
41 2ykg_A Probable ATP-dependent 100.0 8.2E-32 2.8E-36 301.0 21.4 180 187-407 3-184 (696)
42 3tbk_A RIG-I helicase domain; 100.0 2.1E-31 7.2E-36 289.2 21.7 173 197-409 4-177 (555)
43 4f92_B U5 small nuclear ribonu 100.0 2.8E-31 9.4E-36 316.5 23.6 288 182-538 911-1241(1724)
44 4a2q_A RIG-I, retinoic acid in 100.0 5.5E-31 1.9E-35 297.8 22.0 175 192-408 243-419 (797)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-31 3.8E-36 309.6 16.5 266 192-542 53-325 (1054)
46 4a4z_A Antiviral helicase SKI2 100.0 5.5E-31 1.9E-35 301.4 22.0 286 193-539 36-428 (997)
47 2xgj_A ATP-dependent RNA helic 100.0 2.1E-30 7.2E-35 296.6 25.8 284 192-538 82-434 (1010)
48 2fsf_A Preprotein translocase 100.0 1.9E-30 6.6E-35 282.5 22.9 313 193-547 71-504 (853)
49 4f92_B U5 small nuclear ribonu 100.0 1.5E-30 5.2E-35 310.2 21.6 286 194-538 76-406 (1724)
50 4a2w_A RIG-I, retinoic acid in 100.0 4.1E-30 1.4E-34 294.1 20.2 175 193-408 244-419 (936)
51 1nkt_A Preprotein translocase 100.0 1.1E-29 3.9E-34 276.6 22.1 308 192-547 107-523 (922)
52 1wp9_A ATP-dependent RNA helic 100.0 1.2E-28 4.2E-33 262.1 26.1 162 197-410 9-170 (494)
53 4gl2_A Interferon-induced heli 100.0 7.6E-30 2.6E-34 285.1 16.7 146 197-361 7-156 (699)
54 2eyq_A TRCF, transcription-rep 100.0 1.2E-26 4E-31 269.4 31.5 268 180-538 586-866 (1151)
55 1gm5_A RECG; helicase, replica 99.9 1.8E-27 6E-32 264.5 19.7 265 184-539 356-642 (780)
56 2oca_A DAR protein, ATP-depend 99.9 1.9E-27 6.4E-32 256.0 18.7 276 197-538 113-399 (510)
57 2xau_A PRE-mRNA-splicing facto 99.9 6.9E-27 2.4E-31 261.2 17.5 274 173-533 70-361 (773)
58 2fwr_A DNA repair protein RAD2 99.9 4E-26 1.4E-30 243.2 20.5 256 197-538 93-396 (472)
59 2jlq_A Serine protease subunit 99.9 6.8E-27 2.3E-31 247.3 9.8 235 194-538 1-236 (451)
60 2whx_A Serine protease/ntpase/ 99.9 1.8E-27 6.1E-32 259.7 5.4 249 180-538 155-403 (618)
61 3o8b_A HCV NS3 protease/helica 99.9 2.9E-26 1E-30 248.3 5.5 216 200-524 219-434 (666)
62 3h1t_A Type I site-specific re 99.9 5.2E-24 1.8E-28 233.1 19.3 289 197-547 178-514 (590)
63 2wv9_A Flavivirin protease NS2 99.9 5.3E-26 1.8E-30 249.6 2.4 242 189-538 202-458 (673)
64 1yks_A Genome polyprotein [con 99.9 1E-25 3.4E-30 237.3 4.2 215 211-538 6-225 (440)
65 2z83_A Helicase/nucleoside tri 99.9 5.3E-25 1.8E-29 233.2 9.5 219 207-538 15-238 (459)
66 2v6i_A RNA helicase; membrane, 99.9 3.5E-24 1.2E-28 225.1 15.0 218 213-538 2-219 (431)
67 3b6e_A Interferon-induced heli 99.9 1.2E-23 4E-28 199.7 12.7 151 195-364 31-185 (216)
68 3rc3_A ATP-dependent RNA helic 99.9 3.3E-23 1.1E-27 226.9 11.6 215 212-534 154-368 (677)
69 2ipc_A Preprotein translocase 99.9 7.1E-21 2.4E-25 207.0 28.4 150 193-371 76-248 (997)
70 1z63_A Helicase of the SNF2/RA 99.9 2.4E-21 8.1E-26 207.8 22.2 284 197-547 37-409 (500)
71 3llm_A ATP-dependent RNA helic 99.9 2.6E-22 9E-27 193.5 11.7 171 183-408 47-220 (235)
72 3dmq_A RNA polymerase-associat 99.9 1.1E-21 3.7E-26 224.9 16.3 301 197-547 153-571 (968)
73 1rif_A DAR protein, DNA helica 99.9 7.3E-22 2.5E-26 195.8 12.9 154 197-410 113-266 (282)
74 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 7.9E-21 2.7E-25 216.5 18.5 157 197-409 271-441 (1038)
75 1z3i_X Similar to RAD54-like; 99.8 3.5E-19 1.2E-23 196.1 28.0 301 197-547 55-484 (644)
76 3mwy_W Chromo domain-containin 99.8 2.4E-19 8.3E-24 202.3 23.1 295 197-547 236-640 (800)
77 3jux_A Protein translocase sub 99.8 2.3E-17 7.7E-22 176.7 27.0 299 193-547 72-537 (822)
78 2fz4_A DNA repair protein RAD2 99.8 7.5E-19 2.6E-23 169.3 14.3 139 196-409 92-231 (237)
79 3crv_A XPD/RAD3 related DNA he 99.6 8.6E-16 3E-20 166.2 13.3 133 194-355 1-187 (551)
80 1c4o_A DNA nucleotide excision 99.6 6.5E-13 2.2E-17 146.2 26.7 68 472-539 423-492 (664)
81 2vl7_A XPD; helicase, unknown 99.5 7.8E-15 2.7E-19 158.1 8.7 132 193-355 4-189 (540)
82 2d7d_A Uvrabc system protein B 99.4 1.6E-11 5.5E-16 135.1 25.9 67 473-539 430-498 (661)
83 4a15_A XPD helicase, ATP-depen 99.3 2.5E-12 8.6E-17 140.3 11.1 84 197-302 3-89 (620)
84 1t5i_A C_terminal domain of A 99.1 8.5E-10 2.9E-14 100.3 12.2 89 459-547 4-96 (172)
85 2hjv_A ATP-dependent RNA helic 99.0 1.1E-09 3.7E-14 98.6 11.4 81 458-538 7-87 (163)
86 2rb4_A ATP-dependent RNA helic 99.0 1.2E-09 4.1E-14 99.5 11.3 90 458-547 5-99 (175)
87 1fuk_A Eukaryotic initiation f 99.0 2.5E-09 8.4E-14 96.5 10.8 79 460-538 3-82 (165)
88 2jgn_A DBX, DDX3, ATP-dependen 98.9 3.3E-09 1.1E-13 97.5 9.4 82 457-538 16-98 (185)
89 2p6n_A ATP-dependent RNA helic 98.9 5.4E-09 1.8E-13 96.6 10.3 92 446-538 15-106 (191)
90 1w36_D RECD, exodeoxyribonucle 98.9 2.9E-09 1E-13 116.0 9.8 134 199-370 151-287 (608)
91 3eaq_A Heat resistant RNA depe 98.8 1.1E-08 3.9E-13 96.1 10.7 78 461-538 6-83 (212)
92 3i32_A Heat resistant RNA depe 98.8 1.5E-08 5.1E-13 100.3 11.3 78 461-538 3-80 (300)
93 2yjt_D ATP-dependent RNA helic 98.1 2.4E-09 8E-14 97.1 0.0 79 460-538 3-82 (170)
94 3upu_A ATP-dependent DNA helic 98.2 9.3E-05 3.2E-09 77.7 20.9 72 191-284 19-94 (459)
95 1z5z_A Helicase of the SNF2/RA 98.1 7.6E-06 2.6E-10 79.7 8.8 79 469-547 93-180 (271)
96 3lfu_A DNA helicase II; SF1 he 98.0 0.00055 1.9E-08 75.0 23.8 72 196-289 8-79 (647)
97 3e1s_A Exodeoxyribonuclease V, 98.0 1.8E-05 6.1E-10 85.3 11.1 64 197-284 189-252 (574)
98 4b3f_X DNA-binding protein smu 98.0 1E-05 3.5E-10 88.9 9.2 68 197-287 189-256 (646)
99 2gk6_A Regulator of nonsense t 98.0 3.3E-05 1.1E-09 84.4 13.0 70 195-287 178-247 (624)
100 2xzl_A ATP-dependent helicase 98.0 6.1E-05 2.1E-09 84.3 15.1 70 195-287 358-427 (802)
101 2wjy_A Regulator of nonsense t 97.9 0.00013 4.3E-09 81.6 15.0 70 195-287 354-423 (800)
102 2o0j_A Terminase, DNA packagin 97.1 0.0021 7.3E-08 65.2 10.5 72 197-290 163-234 (385)
103 3ec2_A DNA replication protein 96.8 0.0055 1.9E-07 55.1 10.2 18 212-229 37-54 (180)
104 3cpe_A Terminase, DNA packagin 96.8 0.0075 2.5E-07 65.2 12.5 74 197-292 163-236 (592)
105 3vkw_A Replicase large subunit 96.4 0.0062 2.1E-07 62.7 8.1 85 214-353 162-246 (446)
106 2b8t_A Thymidine kinase; deoxy 96.3 0.0049 1.7E-07 57.7 6.3 92 212-354 11-102 (223)
107 3te6_A Regulatory protein SIR3 96.0 0.062 2.1E-06 52.9 12.7 19 212-230 44-62 (318)
108 1xx6_A Thymidine kinase; NESG, 95.8 0.01 3.5E-07 54.1 5.7 20 212-231 7-26 (191)
109 2orw_A Thymidine kinase; TMTK, 95.8 0.0078 2.7E-07 54.5 5.0 18 213-230 3-20 (184)
110 2zpa_A Uncharacterized protein 95.8 0.015 5.3E-07 62.8 8.0 103 197-368 175-278 (671)
111 1uaa_A REP helicase, protein ( 95.7 0.016 5.6E-07 63.6 8.0 80 197-298 2-84 (673)
112 1l8q_A Chromosomal replication 95.5 0.046 1.6E-06 54.0 9.6 17 213-229 37-53 (324)
113 2chg_A Replication factor C sm 95.4 0.19 6.3E-06 45.8 12.7 29 340-369 101-129 (226)
114 3bos_A Putative DNA replicatio 95.3 0.013 4.3E-07 54.9 4.5 18 212-229 51-68 (242)
115 2kjq_A DNAA-related protein; s 95.3 0.0088 3E-07 52.1 3.1 18 212-229 35-52 (149)
116 1njg_A DNA polymerase III subu 95.2 0.19 6.4E-06 46.4 12.4 15 215-229 47-61 (250)
117 2v1u_A Cell division control p 95.2 0.26 9.1E-06 49.3 14.2 18 212-229 43-60 (387)
118 2z4s_A Chromosomal replication 95.1 0.095 3.3E-06 54.3 10.6 17 213-229 130-146 (440)
119 1pjr_A PCRA; DNA repair, DNA r 95.1 0.045 1.5E-06 60.6 8.6 71 196-288 10-80 (724)
120 1d2n_A N-ethylmaleimide-sensit 95.0 0.16 5.4E-06 48.6 11.3 17 213-229 64-80 (272)
121 3kl4_A SRP54, signal recogniti 94.8 0.18 6E-06 51.9 11.6 44 340-407 178-224 (433)
122 2orv_A Thymidine kinase; TP4A 94.8 0.054 1.8E-06 50.5 7.0 41 212-275 18-58 (234)
123 2p6n_A ATP-dependent RNA helic 94.7 0.14 4.8E-06 46.4 9.6 70 265-347 55-128 (191)
124 2hjv_A ATP-dependent RNA helic 94.7 0.11 3.7E-06 45.6 8.5 72 265-349 36-111 (163)
125 2j9r_A Thymidine kinase; TK1, 94.6 0.038 1.3E-06 51.0 5.4 40 213-275 28-67 (214)
126 3e2i_A Thymidine kinase; Zn-bi 94.6 0.046 1.6E-06 50.4 5.9 99 212-366 27-125 (219)
127 2qby_B CDC6 homolog 3, cell di 94.5 0.24 8E-06 49.8 11.6 17 213-229 45-61 (384)
128 1w4r_A Thymidine kinase; type 94.4 0.052 1.8E-06 49.2 5.8 17 213-229 20-36 (195)
129 2qby_A CDC6 homolog 1, cell di 94.4 0.11 3.7E-06 52.1 8.9 17 213-229 45-61 (386)
130 1a5t_A Delta prime, HOLB; zinc 94.3 0.18 6.3E-06 49.9 10.2 32 199-230 4-41 (334)
131 3syl_A Protein CBBX; photosynt 94.3 0.061 2.1E-06 52.5 6.4 17 213-229 67-83 (309)
132 2rb4_A ATP-dependent RNA helic 94.2 0.11 3.7E-06 46.2 7.5 71 264-347 34-108 (175)
133 1fuk_A Eukaryotic initiation f 94.2 0.15 5E-06 44.8 8.3 73 264-349 30-106 (165)
134 1jbk_A CLPB protein; beta barr 94.2 0.48 1.7E-05 41.7 11.9 17 213-229 43-59 (195)
135 3u4q_A ATP-dependent helicase/ 94.0 0.09 3.1E-06 61.7 8.3 70 197-286 10-79 (1232)
136 3u61_B DNA polymerase accessor 93.8 0.14 4.6E-06 50.5 8.0 28 341-368 105-132 (324)
137 3eaq_A Heat resistant RNA depe 93.7 0.18 6.3E-06 46.3 8.2 70 265-347 32-105 (212)
138 2qgz_A Helicase loader, putati 93.7 0.15 5.2E-06 50.0 8.0 17 213-229 152-168 (308)
139 3vfd_A Spastin; ATPase, microt 93.6 0.32 1.1E-05 49.3 10.7 17 213-229 148-164 (389)
140 1iqp_A RFCS; clamp loader, ext 93.6 0.49 1.7E-05 46.1 11.8 15 215-229 48-62 (327)
141 2w58_A DNAI, primosome compone 93.4 0.19 6.6E-06 45.5 7.7 16 214-229 55-70 (202)
142 4b4t_J 26S protease regulatory 93.2 0.86 2.9E-05 46.2 12.8 53 173-229 143-198 (405)
143 2p65_A Hypothetical protein PF 93.1 0.25 8.6E-06 43.6 8.0 17 213-229 43-59 (187)
144 1jr3_A DNA polymerase III subu 92.9 0.57 2E-05 46.7 11.2 15 215-229 40-54 (373)
145 1t5i_A C_terminal domain of A 92.9 0.34 1.2E-05 42.8 8.4 72 265-349 32-107 (172)
146 1fnn_A CDC6P, cell division co 92.6 0.14 4.9E-06 51.4 6.1 15 215-229 46-60 (389)
147 1sxj_D Activator 1 41 kDa subu 92.5 0.25 8.7E-06 48.9 7.8 29 340-369 132-160 (353)
148 2jgn_A DBX, DDX3, ATP-dependen 92.4 0.18 6.2E-06 45.3 6.0 71 264-347 46-120 (185)
149 3eie_A Vacuolar protein sortin 91.7 0.26 8.8E-06 48.5 6.6 50 174-229 14-67 (322)
150 1sxj_B Activator 1 37 kDa subu 91.6 0.38 1.3E-05 46.8 7.7 15 215-229 44-58 (323)
151 3dm5_A SRP54, signal recogniti 91.4 0.63 2.2E-05 47.8 9.3 17 214-230 101-117 (443)
152 3pvs_A Replication-associated 91.3 0.49 1.7E-05 48.9 8.5 16 214-229 51-66 (447)
153 2i4i_A ATP-dependent RNA helic 91.3 0.74 2.5E-05 46.6 9.9 72 263-347 275-350 (417)
154 1sxj_E Activator 1 40 kDa subu 91.2 0.59 2E-05 46.3 8.8 30 340-370 133-162 (354)
155 1sxj_C Activator 1 40 kDa subu 91.1 0.79 2.7E-05 45.3 9.5 30 340-370 109-138 (340)
156 2qp9_X Vacuolar protein sortin 91.0 0.32 1.1E-05 48.7 6.6 17 213-229 84-100 (355)
157 2r6a_A DNAB helicase, replicat 90.9 0.58 2E-05 48.5 8.6 18 212-229 202-219 (454)
158 4b4t_K 26S protease regulatory 90.8 2.2 7.5E-05 43.6 12.7 52 174-229 168-222 (428)
159 3i32_A Heat resistant RNA depe 90.7 0.43 1.5E-05 46.5 7.0 71 264-347 28-102 (300)
160 1sxj_A Activator 1 95 kDa subu 90.7 0.9 3.1E-05 47.9 10.0 17 213-229 77-93 (516)
161 2dr3_A UPF0273 protein PH0284; 90.6 0.48 1.6E-05 44.1 7.1 19 211-229 21-39 (247)
162 1hqc_A RUVB; extended AAA-ATPa 90.2 0.51 1.8E-05 46.1 7.2 17 213-229 38-54 (324)
163 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.48 1.6E-05 43.6 6.4 18 212-229 22-39 (235)
164 3pfi_A Holliday junction ATP-d 89.9 0.63 2.2E-05 45.8 7.6 17 213-229 55-71 (338)
165 3fht_A ATP-dependent RNA helic 89.9 0.76 2.6E-05 46.3 8.4 71 264-347 266-340 (412)
166 1um8_A ATP-dependent CLP prote 89.8 0.32 1.1E-05 49.0 5.4 17 213-229 72-88 (376)
167 1g5t_A COB(I)alamin adenosyltr 89.7 3.5 0.00012 37.2 11.6 31 340-370 119-151 (196)
168 3hu3_A Transitional endoplasmi 89.6 0.47 1.6E-05 49.7 6.6 18 212-229 237-254 (489)
169 1xti_A Probable ATP-dependent 89.3 0.79 2.7E-05 45.8 8.0 74 264-350 250-327 (391)
170 3pey_A ATP-dependent RNA helic 89.2 0.89 3.1E-05 45.4 8.3 76 263-351 242-321 (395)
171 3i5x_A ATP-dependent RNA helic 89.2 3.3 0.00011 43.7 13.2 76 264-349 339-418 (563)
172 2d7d_A Uvrabc system protein B 89.1 2.4 8.2E-05 46.1 12.0 77 264-353 445-525 (661)
173 2gno_A DNA polymerase III, gam 89.0 1.7 5.8E-05 42.3 9.8 21 209-229 12-34 (305)
174 1hv8_A Putative ATP-dependent 89.0 0.78 2.7E-05 45.3 7.5 72 264-348 238-313 (367)
175 3hjh_A Transcription-repair-co 89.0 1.5 5.1E-05 45.7 9.8 39 474-513 371-409 (483)
176 1s2m_A Putative ATP-dependent 88.6 0.96 3.3E-05 45.4 8.0 71 264-347 258-332 (400)
177 2v1x_A ATP-dependent DNA helic 88.2 1 3.5E-05 48.3 8.3 72 263-347 266-341 (591)
178 2yjt_D ATP-dependent RNA helic 88.0 0.092 3.1E-06 46.5 0.0 71 265-348 31-105 (170)
179 2db3_A ATP-dependent RNA helic 88.1 1.3 4.6E-05 45.3 8.8 69 266-347 302-374 (434)
180 3sqw_A ATP-dependent RNA helic 88.0 4.2 0.00014 43.3 13.0 77 264-350 288-368 (579)
181 2ehv_A Hypothetical protein PH 87.9 0.53 1.8E-05 43.9 5.2 20 211-230 28-47 (251)
182 2px0_A Flagellar biosynthesis 87.9 2 7E-05 41.5 9.5 18 212-229 104-121 (296)
183 4a1f_A DNAB helicase, replicat 87.8 1.2 4.2E-05 44.0 7.9 26 211-237 44-69 (338)
184 2j0s_A ATP-dependent RNA helic 87.7 1.4 4.8E-05 44.4 8.6 70 265-347 277-350 (410)
185 2q6t_A DNAB replication FORK h 87.4 0.87 3E-05 47.0 6.9 25 212-237 199-223 (444)
186 1oyw_A RECQ helicase, ATP-depe 87.3 1.4 4.7E-05 46.5 8.4 71 264-347 236-310 (523)
187 2fna_A Conserved hypothetical 87.0 18 0.00062 34.9 16.3 27 343-369 139-168 (357)
188 3n70_A Transport activator; si 86.9 0.46 1.6E-05 40.6 3.8 20 211-230 22-41 (145)
189 3co5_A Putative two-component 86.9 0.45 1.5E-05 40.6 3.6 19 211-229 25-43 (143)
190 4a15_A XPD helicase, ATP-depen 86.9 1.5 5E-05 47.4 8.5 53 477-533 440-492 (620)
191 3gk5_A Uncharacterized rhodane 86.2 0.77 2.6E-05 37.0 4.6 39 485-523 54-92 (108)
192 1yks_A Genome polyprotein [con 86.2 0.74 2.5E-05 47.5 5.5 69 264-346 177-245 (440)
193 2oap_1 GSPE-2, type II secreti 85.5 0.75 2.6E-05 48.4 5.2 40 188-229 237-276 (511)
194 1c4o_A DNA nucleotide excision 85.5 2.1 7.3E-05 46.5 9.0 77 264-353 439-519 (664)
195 1nlf_A Regulatory protein REPA 85.2 2 6.8E-05 41.0 7.8 20 211-230 28-47 (279)
196 3g5j_A Putative ATP/GTP bindin 84.0 1.7 5.7E-05 36.1 5.8 38 487-524 90-128 (134)
197 3bh0_A DNAB-like replicative h 83.1 4.9 0.00017 39.1 9.6 18 212-229 67-84 (315)
198 1wp9_A ATP-dependent RNA helic 82.9 1.9 6.5E-05 44.0 6.9 74 264-350 361-446 (494)
199 2z43_A DNA repair and recombin 82.7 3.9 0.00013 40.0 8.8 19 212-230 106-124 (324)
200 1wv9_A Rhodanese homolog TT165 82.5 1.4 4.8E-05 34.3 4.5 36 487-522 54-89 (94)
201 3foj_A Uncharacterized protein 82.3 1.1 3.9E-05 35.3 3.9 38 485-522 55-92 (100)
202 2eyq_A TRCF, transcription-rep 82.3 1.4 4.7E-05 51.3 6.0 78 264-352 812-893 (1151)
203 3cmu_A Protein RECA, recombina 82.1 0.7 2.4E-05 56.1 3.5 23 212-234 1426-1448(2050)
204 3hix_A ALR3790 protein; rhodan 82.0 1.6 5.5E-05 34.9 4.7 39 485-523 51-90 (106)
205 2wv9_A Flavivirin protease NS2 81.9 1.6 5.6E-05 47.5 6.1 68 264-346 410-478 (673)
206 3pxi_A Negative regulator of g 81.8 1.7 6E-05 48.0 6.5 94 215-403 523-627 (758)
207 3eme_A Rhodanese-like domain p 81.5 1.1 3.7E-05 35.6 3.5 38 485-522 55-92 (103)
208 1e9r_A Conjugal transfer prote 81.0 1.3 4.6E-05 45.3 4.9 43 213-278 53-95 (437)
209 2jlq_A Serine protease subunit 80.9 2 6.9E-05 44.3 6.2 68 265-346 189-256 (451)
210 2v6i_A RNA helicase; membrane, 80.0 1.8 6E-05 44.4 5.3 68 264-345 171-238 (431)
211 4b4t_M 26S protease regulatory 79.8 0.92 3.1E-05 46.5 3.0 54 172-229 175-231 (434)
212 2zr9_A Protein RECA, recombina 79.3 2.9 9.8E-05 41.5 6.5 18 212-229 60-77 (349)
213 2xau_A PRE-mRNA-splicing facto 79.1 5.3 0.00018 44.2 9.2 75 264-347 303-393 (773)
214 3hr8_A Protein RECA; alpha and 78.9 0.95 3.2E-05 45.2 2.7 25 212-237 60-84 (356)
215 3cf0_A Transitional endoplasmi 78.8 0.82 2.8E-05 44.4 2.2 55 174-229 11-65 (301)
216 3iwh_A Rhodanese-like domain p 78.7 1.6 5.6E-05 34.8 3.7 38 485-522 55-92 (103)
217 1qvr_A CLPB protein; coiled co 78.7 4.3 0.00015 45.6 8.4 17 213-229 191-207 (854)
218 1ls1_A Signal recognition part 78.6 8 0.00027 37.2 9.3 17 213-229 98-114 (295)
219 2eyu_A Twitching motility prot 78.2 1.3 4.6E-05 42.0 3.5 19 211-229 23-41 (261)
220 1tue_A Replication protein E1; 78.1 3.3 0.00011 37.7 5.8 51 184-237 28-81 (212)
221 2whx_A Serine protease/ntpase/ 77.9 3.6 0.00012 44.2 7.2 68 265-346 356-423 (618)
222 1gmx_A GLPE protein; transfera 77.7 2.2 7.6E-05 34.1 4.2 39 485-523 57-96 (108)
223 3flh_A Uncharacterized protein 77.6 1.6 5.3E-05 36.1 3.3 39 485-523 70-110 (124)
224 1xp8_A RECA protein, recombina 77.6 3.1 0.00011 41.6 6.1 26 212-238 73-98 (366)
225 3io5_A Recombination and repai 76.9 2.2 7.4E-05 41.8 4.5 23 213-237 29-51 (333)
226 3nhv_A BH2092 protein; alpha-b 76.6 2.2 7.6E-05 36.3 4.1 38 486-523 72-111 (144)
227 3cf2_A TER ATPase, transitiona 76.1 2.5 8.5E-05 46.9 5.3 17 213-229 238-254 (806)
228 2oca_A DAR protein, ATP-depend 76.1 7.5 0.00026 40.4 8.9 75 265-351 348-426 (510)
229 1qxn_A SUD, sulfide dehydrogen 76.0 2.3 7.8E-05 35.9 4.0 39 485-523 81-120 (137)
230 2bjv_A PSP operon transcriptio 75.8 1.9 6.3E-05 40.7 3.8 19 211-229 27-45 (265)
231 2l8b_A Protein TRAI, DNA helic 75.7 3.4 0.00012 36.8 5.0 61 198-280 35-96 (189)
232 3o8b_A HCV NS3 protease/helica 75.4 3 0.0001 45.2 5.6 67 263-346 395-461 (666)
233 3oiy_A Reverse gyrase helicase 75.4 9.7 0.00033 38.2 9.3 51 485-535 63-116 (414)
234 2gza_A Type IV secretion syste 75.2 2 6.9E-05 42.9 4.0 24 206-229 168-191 (361)
235 1lvg_A Guanylate kinase, GMP k 75.2 2 6.7E-05 38.8 3.6 18 212-229 3-20 (198)
236 3fmp_B ATP-dependent RNA helic 75.2 0.59 2E-05 48.6 0.0 70 264-346 333-406 (479)
237 2z0m_A 337AA long hypothetical 75.2 4.7 0.00016 39.0 6.6 70 263-349 219-292 (337)
238 2hhg_A Hypothetical protein RP 74.7 2.9 9.8E-05 35.1 4.3 39 485-523 85-124 (139)
239 3h4m_A Proteasome-activating n 74.6 1.6 5.6E-05 41.5 3.0 52 175-229 14-67 (285)
240 3eiq_A Eukaryotic initiation f 74.1 1.5 5.2E-05 44.1 2.8 71 264-347 280-354 (414)
241 2jtq_A Phage shock protein E; 73.9 4.3 0.00015 30.7 4.8 36 485-521 40-76 (85)
242 3tbk_A RIG-I helicase domain; 73.8 8.1 0.00028 40.3 8.5 75 264-347 389-476 (555)
243 1tq1_A AT5G66040, senescence-a 73.8 2.7 9.3E-05 34.9 3.9 39 485-523 81-120 (129)
244 1u0j_A DNA replication protein 73.2 6.8 0.00023 37.2 6.8 45 184-231 73-122 (267)
245 4ag6_A VIRB4 ATPase, type IV s 73.1 2.8 9.4E-05 42.3 4.4 21 212-232 34-54 (392)
246 3ilm_A ALR3790 protein; rhodan 73.1 3.8 0.00013 34.7 4.7 39 485-523 55-94 (141)
247 1ofh_A ATP-dependent HSL prote 72.5 7 0.00024 37.3 7.1 17 213-229 50-66 (310)
248 3rc3_A ATP-dependent RNA helic 72.5 8.1 0.00028 42.0 8.2 73 267-353 323-401 (677)
249 3d1p_A Putative thiosulfate su 72.5 3.6 0.00012 34.5 4.4 39 485-523 90-129 (139)
250 3b85_A Phosphate starvation-in 72.4 4.8 0.00016 36.6 5.5 38 198-238 8-45 (208)
251 1p9r_A General secretion pathw 72.2 3.8 0.00013 41.8 5.2 28 202-229 155-183 (418)
252 3cmw_A Protein RECA, recombina 72.2 2.5 8.6E-05 50.6 4.3 90 213-355 1431-1523(1706)
253 2pt7_A CAG-ALFA; ATPase, prote 71.9 2.5 8.5E-05 41.6 3.6 22 207-228 165-186 (330)
254 3crv_A XPD/RAD3 related DNA he 71.5 11 0.00038 39.8 8.9 43 485-533 392-434 (551)
255 2zts_A Putative uncharacterize 71.5 3 0.0001 38.5 4.0 18 212-229 29-46 (251)
256 2l82_A Designed protein OR32; 71.2 13 0.00043 29.5 6.7 46 489-534 5-50 (162)
257 2fsx_A RV0390, COG0607: rhodan 71.1 3.8 0.00013 34.9 4.3 37 485-521 79-116 (148)
258 4gl2_A Interferon-induced heli 70.9 1.7 5.8E-05 47.5 2.4 75 264-347 400-488 (699)
259 3jvv_A Twitching mobility prot 70.7 3.1 0.00011 41.4 4.1 19 211-229 121-139 (356)
260 1kgd_A CASK, peripheral plasma 70.7 2.5 8.6E-05 37.3 3.1 18 212-229 4-21 (180)
261 2ewv_A Twitching motility prot 70.7 2.5 8.5E-05 42.4 3.4 19 211-229 134-152 (372)
262 2k0z_A Uncharacterized protein 70.4 5.3 0.00018 32.0 4.8 38 484-521 54-91 (110)
263 2ffh_A Protein (FFH); SRP54, s 70.4 20 0.00069 36.4 10.1 18 213-230 98-115 (425)
264 1ojl_A Transcriptional regulat 69.5 2.9 9.8E-05 40.6 3.5 19 211-229 23-41 (304)
265 2r44_A Uncharacterized protein 68.8 3.1 0.00011 40.6 3.6 18 212-229 45-62 (331)
266 4b4t_L 26S protease subunit RP 68.7 2 6.8E-05 44.1 2.2 53 173-229 176-231 (437)
267 3foz_A TRNA delta(2)-isopenten 68.3 2.2 7.5E-05 41.5 2.3 16 214-229 11-26 (316)
268 3tau_A Guanylate kinase, GMP k 67.9 3.1 0.0001 37.7 3.1 18 212-229 7-24 (208)
269 3exa_A TRNA delta(2)-isopenten 67.7 2.3 7.9E-05 41.5 2.3 17 213-229 3-19 (322)
270 3nbx_X ATPase RAVA; AAA+ ATPas 67.5 6.4 0.00022 41.1 5.8 26 203-229 32-57 (500)
271 3tr0_A Guanylate kinase, GMP k 67.3 3.6 0.00012 36.7 3.5 18 212-229 6-23 (205)
272 3a8t_A Adenylate isopentenyltr 67.2 2.8 9.6E-05 41.3 2.8 17 213-229 40-56 (339)
273 3vaa_A Shikimate kinase, SK; s 67.2 3.2 0.00011 37.2 3.1 18 212-229 24-41 (199)
274 2qmh_A HPR kinase/phosphorylas 66.7 2.9 9.9E-05 37.9 2.6 18 212-229 33-50 (205)
275 3bgw_A DNAB-like replicative h 66.6 4.7 0.00016 41.4 4.5 18 212-229 196-213 (444)
276 4gp7_A Metallophosphoesterase; 66.4 2 6.8E-05 37.6 1.5 20 212-231 8-27 (171)
277 1ry6_A Internal kinesin; kines 66.0 3.8 0.00013 40.7 3.6 21 209-229 79-101 (360)
278 2va8_A SSO2462, SKI2-type heli 66.0 11 0.00038 41.1 7.7 75 264-347 252-362 (715)
279 2qz4_A Paraplegin; AAA+, SPG7, 66.0 2.7 9.1E-05 39.3 2.4 18 212-229 38-55 (262)
280 3trf_A Shikimate kinase, SK; a 65.9 2.8 9.6E-05 36.9 2.4 17 213-229 5-21 (185)
281 4b4t_H 26S protease regulatory 65.9 3.6 0.00012 42.3 3.4 53 173-229 204-259 (467)
282 1fuu_A Yeast initiation factor 65.8 1.3 4.3E-05 44.3 0.0 71 264-347 259-333 (394)
283 4f67_A UPF0176 protein LPG2838 65.8 7.9 0.00027 36.7 5.6 48 477-524 172-220 (265)
284 1gm5_A RECG; helicase, replica 65.7 8.1 0.00028 42.7 6.5 55 485-539 416-474 (780)
285 3hws_A ATP-dependent CLP prote 65.7 2.9 9.9E-05 41.6 2.7 18 212-229 50-67 (363)
286 3lw7_A Adenylate kinase relate 65.5 2.7 9.2E-05 36.2 2.1 15 215-229 3-17 (179)
287 3b9p_A CG5977-PA, isoform A; A 65.4 2.6 9E-05 40.4 2.3 18 212-229 53-70 (297)
288 1z6g_A Guanylate kinase; struc 65.4 4.4 0.00015 37.0 3.7 19 211-229 21-39 (218)
289 3c8u_A Fructokinase; YP_612366 65.4 3.8 0.00013 37.0 3.2 25 212-238 21-45 (208)
290 3u4q_B ATP-dependent helicase/ 65.1 8 0.00027 45.0 6.6 33 486-518 342-375 (1166)
291 2ze6_A Isopentenyl transferase 64.9 2.7 9.2E-05 39.5 2.2 15 215-229 3-17 (253)
292 2x8a_A Nuclear valosin-contain 64.8 1.8 6.1E-05 41.4 0.8 52 175-229 7-60 (274)
293 2ius_A DNA translocase FTSK; n 64.8 9.2 0.00031 39.9 6.3 26 212-237 166-191 (512)
294 1zp6_A Hypothetical protein AT 64.8 2.3 7.7E-05 37.7 1.5 19 211-229 7-25 (191)
295 1qhx_A CPT, protein (chloramph 64.3 3.1 0.00011 36.2 2.4 17 213-229 3-19 (178)
296 3a00_A Guanylate kinase, GMP k 64.3 4.6 0.00016 35.7 3.5 17 213-229 1-17 (186)
297 2v9p_A Replication protein E1; 64.2 4.1 0.00014 39.5 3.3 27 211-239 124-150 (305)
298 4b4t_I 26S protease regulatory 64.1 4.8 0.00016 41.0 3.9 53 173-229 177-232 (437)
299 2ykg_A Probable ATP-dependent 64.1 4.1 0.00014 44.3 3.7 79 263-350 397-488 (696)
300 2j41_A Guanylate kinase; GMP, 63.9 3.6 0.00012 36.8 2.7 18 212-229 5-22 (207)
301 1kag_A SKI, shikimate kinase I 63.6 5 0.00017 34.7 3.6 18 212-229 3-20 (173)
302 2qor_A Guanylate kinase; phosp 63.4 3.6 0.00012 37.0 2.6 18 212-229 11-28 (204)
303 3ney_A 55 kDa erythrocyte memb 63.3 4.4 0.00015 36.6 3.1 18 212-229 18-35 (197)
304 3iij_A Coilin-interacting nucl 63.3 4.1 0.00014 35.6 3.0 18 212-229 10-27 (180)
305 2z83_A Helicase/nucleoside tri 63.3 4.4 0.00015 41.8 3.6 69 264-346 190-258 (459)
306 1t6n_A Probable ATP-dependent 63.0 26 0.00089 31.3 8.6 43 487-529 83-130 (220)
307 1vee_A Proline-rich protein fa 63.0 5.9 0.0002 33.0 3.8 36 486-521 74-110 (134)
308 3uk6_A RUVB-like 2; hexameric 62.9 3.8 0.00013 40.6 2.9 17 213-229 70-86 (368)
309 1lv7_A FTSH; alpha/beta domain 62.6 3.4 0.00011 38.7 2.4 17 213-229 45-61 (257)
310 4f4c_A Multidrug resistance pr 62.4 8.5 0.00029 45.4 6.2 31 339-369 1233-1263(1321)
311 2c95_A Adenylate kinase 1; tra 62.1 4.7 0.00016 35.6 3.2 19 211-229 7-25 (196)
312 1s96_A Guanylate kinase, GMP k 62.0 5.2 0.00018 36.7 3.5 19 211-229 14-32 (219)
313 2iut_A DNA translocase FTSK; n 61.7 11 0.00037 39.9 6.2 26 213-238 214-239 (574)
314 4eun_A Thermoresistant glucoki 61.7 5.7 0.00019 35.5 3.6 18 212-229 28-45 (200)
315 1znw_A Guanylate kinase, GMP k 61.6 5.4 0.00018 35.9 3.5 19 211-229 18-36 (207)
316 3ber_A Probable ATP-dependent 61.5 24 0.00082 32.6 8.2 43 485-527 110-156 (249)
317 1y63_A LMAJ004144AAA protein; 61.5 3.7 0.00013 36.3 2.3 18 212-229 9-26 (184)
318 1vma_A Cell division protein F 61.0 22 0.00076 34.3 8.0 17 213-229 104-120 (306)
319 3h11_B Caspase-8; cell death, 60.9 14 0.00049 35.0 6.4 49 485-534 16-85 (271)
320 1ex7_A Guanylate kinase; subst 60.7 4.1 0.00014 36.4 2.4 16 214-229 2-17 (186)
321 3crm_A TRNA delta(2)-isopenten 60.5 4.4 0.00015 39.7 2.8 16 214-229 6-21 (323)
322 1f2t_A RAD50 ABC-ATPase; DNA d 60.5 5.9 0.0002 33.8 3.3 15 215-229 25-39 (149)
323 3nwn_A Kinesin-like protein KI 60.4 6 0.0002 39.3 3.8 25 205-230 96-122 (359)
324 1xwi_A SKD1 protein; VPS4B, AA 60.2 4.6 0.00016 39.5 2.9 50 174-229 8-61 (322)
325 1ly1_A Polynucleotide kinase; 60.2 3.9 0.00013 35.6 2.2 15 215-229 4-18 (181)
326 1knq_A Gluconate kinase; ALFA/ 60.1 5.4 0.00018 34.6 3.1 18 212-229 7-24 (175)
327 4f4c_A Multidrug resistance pr 60.1 19 0.00066 42.3 8.7 32 339-370 570-601 (1321)
328 1in4_A RUVB, holliday junction 59.9 6.7 0.00023 38.4 4.1 16 214-229 52-67 (334)
329 1u94_A RECA protein, recombina 59.9 6.6 0.00023 39.0 4.0 19 212-230 62-80 (356)
330 2i3b_A HCR-ntpase, human cance 59.8 7.1 0.00024 34.8 3.9 29 339-367 103-133 (189)
331 1g8p_A Magnesium-chelatase 38 59.4 4.3 0.00015 39.7 2.6 17 213-229 45-61 (350)
332 2oxc_A Probable ATP-dependent 59.0 13 0.00044 33.9 5.7 43 485-527 91-138 (230)
333 1ye8_A Protein THEP1, hypothet 58.9 6.5 0.00022 34.7 3.4 15 215-229 2-16 (178)
334 2r2a_A Uncharacterized protein 58.8 5.9 0.0002 35.8 3.2 16 215-230 7-22 (199)
335 3t15_A Ribulose bisphosphate c 58.8 4.8 0.00016 38.7 2.7 16 214-229 37-52 (293)
336 1bg2_A Kinesin; motor protein, 58.7 6.9 0.00024 38.3 3.9 24 206-230 70-95 (325)
337 3d3q_A TRNA delta(2)-isopenten 58.7 5 0.00017 39.6 2.8 15 215-229 9-23 (340)
338 1z5z_A Helicase of the SNF2/RA 58.0 32 0.0011 32.4 8.5 75 265-351 113-193 (271)
339 4etp_A Kinesin-like protein KA 57.9 7.5 0.00026 39.3 4.1 25 205-230 132-158 (403)
340 1kht_A Adenylate kinase; phosp 57.8 4.7 0.00016 35.4 2.4 17 213-229 3-19 (192)
341 3kb2_A SPBC2 prophage-derived 57.7 4.5 0.00015 34.8 2.1 15 215-229 3-17 (173)
342 1w36_B RECB, exodeoxyribonucle 57.5 16 0.00054 42.6 7.3 62 214-286 17-78 (1180)
343 3dc4_A Kinesin-like protein NO 57.3 6.9 0.00023 38.7 3.6 24 206-230 87-112 (344)
344 3fho_A ATP-dependent RNA helic 57.3 1.6 5.5E-05 45.8 -1.0 71 264-347 357-431 (508)
345 2h58_A Kinesin-like protein KI 57.3 7.5 0.00026 38.1 3.9 25 205-230 72-98 (330)
346 1ixz_A ATP-dependent metallopr 57.3 6.2 0.00021 36.7 3.2 53 174-229 12-65 (254)
347 2c9o_A RUVB-like 1; hexameric 57.3 5.4 0.00019 41.0 3.0 18 213-230 63-80 (456)
348 3kta_A Chromosome segregation 57.2 5.6 0.00019 34.8 2.7 15 215-229 28-42 (182)
349 3uie_A Adenylyl-sulfate kinase 57.1 6.4 0.00022 35.2 3.1 30 198-229 12-41 (200)
350 4akg_A Glutathione S-transfera 57.1 6.1 0.00021 49.7 3.8 27 204-230 1258-1284(2695)
351 2zfi_A Kinesin-like protein KI 57.0 7.6 0.00026 38.7 3.9 23 206-229 82-106 (366)
352 3vkg_A Dynein heavy chain, cyt 56.9 9.4 0.00032 48.7 5.4 49 182-231 873-924 (3245)
353 2vvg_A Kinesin-2; motor protei 56.8 7.7 0.00026 38.4 3.9 23 207-230 83-107 (350)
354 3asz_A Uridine kinase; cytidin 56.7 6.3 0.00022 35.4 3.1 18 212-229 5-22 (211)
355 3b6u_A Kinesin-like protein KI 56.7 7.5 0.00026 38.8 3.8 23 206-229 94-118 (372)
356 1v8k_A Kinesin-like protein KI 56.6 7.6 0.00026 39.3 3.8 23 206-229 147-171 (410)
357 3tif_A Uncharacterized ABC tra 56.6 5.4 0.00018 37.0 2.6 18 211-228 29-46 (235)
358 2y65_A Kinesin, kinesin heavy 56.6 7.8 0.00027 38.6 3.9 24 206-230 77-102 (365)
359 1rj9_A FTSY, signal recognitio 56.5 7.6 0.00026 37.6 3.7 25 212-238 101-125 (304)
360 3lda_A DNA repair protein RAD5 56.3 16 0.00055 36.8 6.3 18 213-230 178-195 (400)
361 3eph_A TRNA isopentenyltransfe 56.3 5.4 0.00019 40.3 2.7 15 215-229 4-18 (409)
362 3dmq_A RNA polymerase-associat 56.3 8.9 0.0003 43.6 4.8 76 264-351 503-584 (968)
363 2cvh_A DNA repair and recombin 56.2 5.8 0.0002 35.7 2.7 19 212-230 19-37 (220)
364 2nr8_A Kinesin-like protein KI 56.1 7.8 0.00027 38.5 3.8 24 205-229 95-120 (358)
365 1x88_A Kinesin-like protein KI 56.1 7.3 0.00025 38.7 3.6 24 205-229 80-105 (359)
366 1t5c_A CENP-E protein, centrom 56.1 7.8 0.00027 38.3 3.8 24 206-230 70-95 (349)
367 3h11_A CAsp8 and FADD-like apo 56.1 6.1 0.00021 37.6 2.9 50 485-535 42-91 (272)
368 3mwy_W Chromo domain-containin 55.8 1.4E+02 0.0049 32.7 14.5 86 264-365 572-663 (800)
369 3nzo_A UDP-N-acetylglucosamine 55.6 86 0.003 31.1 11.7 89 204-321 27-119 (399)
370 2r62_A Cell division protease 55.5 2.8 9.7E-05 39.4 0.4 17 213-229 44-60 (268)
371 1goj_A Kinesin, kinesin heavy 55.5 7.8 0.00027 38.4 3.7 22 207-229 74-97 (355)
372 3gbj_A KIF13B protein; kinesin 55.4 8.1 0.00028 38.3 3.8 25 205-230 84-110 (354)
373 3d8b_A Fidgetin-like protein 1 55.4 6.2 0.00021 39.1 3.0 19 212-230 116-134 (357)
374 4fcw_A Chaperone protein CLPB; 55.4 4.8 0.00016 38.7 2.1 16 214-229 48-63 (311)
375 2p6r_A Afuhel308 helicase; pro 55.3 14 0.00049 40.1 6.1 74 265-347 243-346 (702)
376 2f1r_A Molybdopterin-guanine d 55.3 5.7 0.00019 34.9 2.4 23 215-239 4-26 (171)
377 3tg1_B Dual specificity protei 55.3 9 0.00031 32.9 3.7 37 486-522 93-138 (158)
378 4ddu_A Reverse gyrase; topoiso 55.2 22 0.00077 40.9 7.9 52 484-535 119-173 (1104)
379 3u06_A Protein claret segregat 55.1 7.6 0.00026 39.4 3.5 25 205-230 130-156 (412)
380 3cob_A Kinesin heavy chain-lik 55.1 7 0.00024 39.0 3.3 25 205-230 71-97 (369)
381 3lre_A Kinesin-like protein KI 55.1 8 0.00027 38.4 3.6 23 206-229 98-122 (355)
382 2eg4_A Probable thiosulfate su 54.8 14 0.00047 33.8 5.1 39 485-523 183-221 (230)
383 2zj8_A DNA helicase, putative 54.6 15 0.00053 40.0 6.3 75 265-349 238-345 (720)
384 4a14_A Kinesin, kinesin-like p 54.6 9 0.00031 37.8 4.0 24 206-230 76-101 (344)
385 3fe2_A Probable ATP-dependent 54.5 43 0.0015 30.5 8.6 44 486-529 102-149 (242)
386 2wbe_C Bipolar kinesin KRP-130 54.3 7.9 0.00027 38.7 3.5 23 206-229 93-117 (373)
387 1n0w_A DNA repair protein RAD5 53.9 7.1 0.00024 35.8 2.9 20 212-231 23-42 (243)
388 3t61_A Gluconokinase; PSI-biol 53.5 5.7 0.00019 35.5 2.1 17 213-229 18-34 (202)
389 1urh_A 3-mercaptopyruvate sulf 53.4 12 0.00039 35.5 4.4 39 485-523 85-125 (280)
390 3cm0_A Adenylate kinase; ATP-b 53.3 5.1 0.00017 35.1 1.7 18 212-229 3-20 (186)
391 3t0q_A AGR253WP; kinesin, alph 53.3 7.3 0.00025 38.6 3.0 25 205-230 77-103 (349)
392 2bdt_A BH3686; alpha-beta prot 53.2 4.5 0.00015 35.7 1.3 16 214-229 3-18 (189)
393 1urh_A 3-mercaptopyruvate sulf 53.1 12 0.0004 35.5 4.4 40 485-524 229-269 (280)
394 3b9q_A Chloroplast SRP recepto 53.1 8.2 0.00028 37.3 3.3 25 212-238 99-123 (302)
395 1cke_A CK, MSSA, protein (cyti 53.0 9.3 0.00032 34.6 3.6 17 213-229 5-21 (227)
396 4akg_A Glutathione S-transfera 52.9 16 0.00054 46.1 6.5 48 183-231 891-941 (2695)
397 4a2w_A RIG-I, retinoic acid in 52.9 11 0.00039 42.6 4.9 80 262-350 629-721 (936)
398 2bwj_A Adenylate kinase 5; pho 52.8 7.4 0.00025 34.4 2.8 18 212-229 11-28 (199)
399 1m7g_A Adenylylsulfate kinase; 52.8 14 0.00049 33.1 4.8 30 198-229 12-41 (211)
400 4a74_A DNA repair and recombin 52.8 5.7 0.00019 36.1 2.0 18 212-229 24-41 (231)
401 2heh_A KIF2C protein; kinesin, 52.8 9.4 0.00032 38.3 3.8 24 206-230 127-152 (387)
402 1iy2_A ATP-dependent metallopr 52.8 8 0.00027 36.6 3.2 16 214-229 74-89 (278)
403 2h54_A Caspase-1; allosteric s 52.8 30 0.001 30.5 6.7 48 486-534 43-101 (178)
404 2rhm_A Putative kinase; P-loop 52.5 5.5 0.00019 35.0 1.9 17 213-229 5-21 (193)
405 2owm_A Nckin3-434, related to 52.2 9.8 0.00034 38.9 3.9 24 206-230 129-154 (443)
406 3lnc_A Guanylate kinase, GMP k 52.2 6.4 0.00022 36.1 2.3 19 211-229 25-43 (231)
407 1cr0_A DNA primase/helicase; R 52.0 8.8 0.0003 36.6 3.4 20 211-230 33-52 (296)
408 2vl7_A XPD; helicase, unknown 52.0 9.9 0.00034 40.0 4.0 53 477-535 376-428 (540)
409 3e4c_A Caspase-1; zymogen, inf 51.7 27 0.00094 33.6 6.8 48 486-534 60-118 (302)
410 3i2v_A Adenylyltransferase and 51.7 14 0.00048 30.0 4.2 37 488-524 74-117 (127)
411 3k1j_A LON protease, ATP-depen 51.7 11 0.00039 40.2 4.5 22 208-229 55-76 (604)
412 1gvn_B Zeta; postsegregational 51.6 6 0.00021 37.9 2.1 17 213-229 33-49 (287)
413 3qks_A DNA double-strand break 51.5 9.6 0.00033 34.3 3.3 23 214-238 24-46 (203)
414 3bfn_A Kinesin-like protein KI 51.5 7.8 0.00027 38.9 2.9 22 208-230 93-116 (388)
415 1qtn_A Caspase-8; apoptosis, d 51.3 30 0.001 30.0 6.3 38 496-534 54-91 (164)
416 2cbz_A Multidrug resistance-as 51.2 7.4 0.00025 36.1 2.6 19 211-229 29-47 (237)
417 1htw_A HI0065; nucleotide-bind 50.9 8.4 0.00029 33.3 2.7 18 211-228 31-48 (158)
418 3hgt_A HDA1 complex subunit 3; 50.9 21 0.00073 34.7 5.8 53 470-522 107-161 (328)
419 1e0c_A Rhodanese, sulfurtransf 50.6 14 0.00047 34.8 4.5 38 485-522 222-260 (271)
420 3nwj_A ATSK2; P loop, shikimat 50.5 11 0.00036 35.4 3.6 18 212-229 47-64 (250)
421 2zan_A Vacuolar protein sortin 50.5 8.1 0.00028 39.6 3.0 53 174-229 130-183 (444)
422 2dko_A Caspase-3; low barrier 50.3 21 0.00072 30.3 5.1 48 486-534 16-77 (146)
423 2chq_A Replication factor C sm 50.2 12 0.00039 35.9 3.9 15 215-229 40-54 (319)
424 1tev_A UMP-CMP kinase; ploop, 50.1 7 0.00024 34.3 2.2 18 213-230 3-20 (196)
425 1zd8_A GTP:AMP phosphotransfer 50.1 7.2 0.00025 35.6 2.3 18 212-229 6-23 (227)
426 2pez_A Bifunctional 3'-phospho 50.0 10 0.00034 33.0 3.1 18 212-229 4-21 (179)
427 3qf7_A RAD50; ABC-ATPase, ATPa 49.8 6.7 0.00023 39.1 2.2 16 215-230 25-40 (365)
428 1xjc_A MOBB protein homolog; s 49.8 15 0.00052 32.1 4.2 15 215-229 6-20 (169)
429 1uar_A Rhodanese; sulfurtransf 49.7 23 0.00079 33.5 5.9 47 476-522 220-271 (285)
430 1q57_A DNA primase/helicase; d 49.7 12 0.0004 39.1 4.1 18 212-229 241-258 (503)
431 2v54_A DTMP kinase, thymidylat 49.7 7.6 0.00026 34.5 2.3 18 212-229 3-20 (204)
432 3vkg_A Dynein heavy chain, cyt 49.6 9.1 0.00031 48.8 3.6 27 203-229 1294-1320(3245)
433 1nks_A Adenylate kinase; therm 49.5 11 0.00038 32.9 3.4 15 215-229 3-17 (194)
434 2iyv_A Shikimate kinase, SK; t 49.5 8.4 0.00029 33.7 2.6 16 214-229 3-18 (184)
435 3p45_A Caspase-6; protease, hu 49.5 38 0.0013 29.8 6.8 49 485-534 43-105 (179)
436 1sgw_A Putative ABC transporte 49.4 8.7 0.0003 35.1 2.7 19 211-229 33-51 (214)
437 1odf_A YGR205W, hypothetical 3 49.2 12 0.0004 36.0 3.7 15 215-229 33-47 (290)
438 2ghi_A Transport protein; mult 49.1 8.3 0.00028 36.3 2.6 19 211-229 44-62 (260)
439 1via_A Shikimate kinase; struc 48.9 8.2 0.00028 33.5 2.4 15 215-229 6-20 (175)
440 1np6_A Molybdopterin-guanine d 48.9 12 0.00039 33.0 3.3 16 214-229 7-22 (174)
441 3egc_A Putative ribose operon 48.8 1.6E+02 0.0056 27.0 13.8 39 473-512 173-211 (291)
442 2yvu_A Probable adenylyl-sulfa 48.6 11 0.00039 32.9 3.3 18 212-229 12-29 (186)
443 2pze_A Cystic fibrosis transme 48.6 8.4 0.00029 35.5 2.5 19 211-229 32-50 (229)
444 3gfo_A Cobalt import ATP-bindi 48.6 8.2 0.00028 36.8 2.4 19 211-229 32-50 (275)
445 3mm4_A Histidine kinase homolo 48.4 1.4E+02 0.0048 26.1 12.6 66 212-287 19-84 (206)
446 1aky_A Adenylate kinase; ATP:A 48.4 8.5 0.00029 34.9 2.5 18 212-229 3-20 (220)
447 3aay_A Putative thiosulfate su 48.3 25 0.00084 33.1 5.9 39 485-523 76-116 (277)
448 3h1t_A Type I site-specific re 48.2 30 0.001 36.6 7.1 78 264-350 439-526 (590)
449 2pcj_A ABC transporter, lipopr 48.2 8.3 0.00029 35.4 2.4 18 211-228 28-45 (224)
450 3aez_A Pantothenate kinase; tr 48.1 11 0.00037 36.6 3.3 25 212-238 89-113 (312)
451 1zuh_A Shikimate kinase; alpha 48.0 9.2 0.00031 32.8 2.5 18 212-229 6-23 (168)
452 3h75_A Periplasmic sugar-bindi 48.0 1.9E+02 0.0065 27.5 18.2 38 474-512 193-230 (350)
453 2og2_A Putative signal recogni 47.5 11 0.00037 37.4 3.3 25 213-239 157-181 (359)
454 2bbw_A Adenylate kinase 4, AK4 47.5 8.8 0.0003 35.5 2.5 18 212-229 26-43 (246)
455 4e22_A Cytidylate kinase; P-lo 47.4 8.7 0.0003 35.9 2.4 19 211-229 25-43 (252)
456 2ff7_A Alpha-hemolysin translo 47.4 9 0.00031 35.8 2.5 19 211-229 33-51 (247)
457 1sq5_A Pantothenate kinase; P- 47.4 16 0.00053 35.3 4.3 18 212-229 79-96 (308)
458 3f9v_A Minichromosome maintena 47.3 7.6 0.00026 41.5 2.2 15 215-229 329-343 (595)
459 1e0c_A Rhodanese, sulfurtransf 47.2 23 0.00078 33.2 5.4 39 485-523 80-120 (271)
460 3k4h_A Putative transcriptiona 47.2 1.1E+02 0.0039 28.1 10.5 38 474-512 180-217 (292)
461 2r2a_A Uncharacterized protein 47.2 7.3 0.00025 35.1 1.8 13 342-354 88-100 (199)
462 1g41_A Heat shock protein HSLU 47.1 9.1 0.00031 39.2 2.7 17 213-229 50-66 (444)
463 1mv5_A LMRA, multidrug resista 47.1 7.9 0.00027 36.0 2.1 19 211-229 26-44 (243)
464 1g6h_A High-affinity branched- 47.0 9.1 0.00031 36.0 2.5 19 211-229 31-49 (257)
465 3auy_A DNA double-strand break 46.9 11 0.00038 37.5 3.3 22 214-237 26-47 (371)
466 2cdn_A Adenylate kinase; phosp 46.8 9.4 0.00032 34.0 2.5 17 213-229 20-36 (201)
467 3fb4_A Adenylate kinase; psych 46.8 9.3 0.00032 34.4 2.5 15 215-229 2-16 (216)
468 4g1u_C Hemin import ATP-bindin 46.8 9.2 0.00031 36.2 2.5 19 211-229 35-53 (266)
469 1zak_A Adenylate kinase; ATP:A 46.8 9.4 0.00032 34.6 2.5 18 212-229 4-21 (222)
470 2jaq_A Deoxyguanosine kinase; 46.7 13 0.00043 32.9 3.3 15 215-229 2-16 (205)
471 2qen_A Walker-type ATPase; unk 46.6 14 0.00046 35.8 3.8 29 201-229 19-47 (350)
472 1e6c_A Shikimate kinase; phosp 46.4 9.6 0.00033 32.8 2.4 16 214-229 3-18 (173)
473 3pxg_A Negative regulator of g 46.3 15 0.00052 37.8 4.3 18 212-229 200-217 (468)
474 1b0u_A Histidine permease; ABC 46.2 9.7 0.00033 35.9 2.6 19 211-229 30-48 (262)
475 1qf9_A UMP/CMP kinase, protein 46.2 9.5 0.00032 33.3 2.4 16 214-229 7-22 (194)
476 1ji0_A ABC transporter; ATP bi 46.0 9.7 0.00033 35.3 2.5 19 211-229 30-48 (240)
477 3e70_C DPA, signal recognition 46.0 13 0.00044 36.4 3.4 25 212-238 128-152 (328)
478 1ukz_A Uridylate kinase; trans 45.3 9.2 0.00031 34.0 2.2 16 214-229 16-31 (203)
479 3nh6_A ATP-binding cassette SU 45.3 8 0.00028 37.5 1.8 24 211-236 78-101 (306)
480 2qt1_A Nicotinamide riboside k 45.2 9.3 0.00032 34.2 2.2 18 212-229 20-37 (207)
481 3dl0_A Adenylate kinase; phosp 45.2 10 0.00035 34.1 2.5 15 215-229 2-16 (216)
482 1vpl_A ABC transporter, ATP-bi 45.0 10 0.00036 35.6 2.6 19 211-229 39-57 (256)
483 3a4m_A L-seryl-tRNA(SEC) kinas 44.9 9.1 0.00031 35.9 2.2 17 213-229 4-20 (260)
484 3hzu_A Thiosulfate sulfurtrans 44.9 24 0.00082 34.2 5.3 47 476-522 98-149 (318)
485 2ouc_A Dual specificity protei 44.7 12 0.00043 30.9 2.8 37 486-522 83-128 (142)
486 2if2_A Dephospho-COA kinase; a 44.7 9.2 0.00031 34.1 2.1 15 215-229 3-17 (204)
487 2yz2_A Putative ABC transporte 44.6 11 0.00037 35.7 2.6 31 339-369 154-184 (266)
488 2wwf_A Thymidilate kinase, put 44.6 9.6 0.00033 34.0 2.2 18 212-229 9-26 (212)
489 1gku_B Reverse gyrase, TOP-RG; 44.5 20 0.00067 41.2 5.2 74 264-351 275-352 (1054)
490 2ixe_A Antigen peptide transpo 44.5 11 0.00037 35.8 2.6 19 211-229 43-61 (271)
491 1zu4_A FTSY; GTPase, signal re 44.5 17 0.00058 35.4 4.1 18 212-229 104-121 (320)
492 2olj_A Amino acid ABC transpor 44.4 11 0.00037 35.6 2.6 19 211-229 48-66 (263)
493 2qi9_C Vitamin B12 import ATP- 44.4 11 0.00036 35.4 2.5 19 211-229 24-42 (249)
494 2plr_A DTMP kinase, probable t 44.4 9 0.00031 34.1 2.0 18 212-229 3-20 (213)
495 1f9v_A Kinesin-like protein KA 44.3 9.7 0.00033 37.6 2.3 25 205-230 76-102 (347)
496 1uar_A Rhodanese; sulfurtransf 44.1 20 0.00068 33.9 4.5 39 485-523 78-118 (285)
497 2vli_A Antibiotic resistance p 44.1 8.6 0.00029 33.4 1.7 17 213-229 5-21 (183)
498 2r8r_A Sensor protein; KDPD, P 43.9 18 0.00061 33.3 3.9 16 215-230 8-23 (228)
499 3od5_A Caspase-6; caspase doma 43.8 41 0.0014 31.9 6.6 49 485-534 20-82 (278)
500 1nn5_A Similar to deoxythymidy 43.8 10 0.00035 33.9 2.2 18 212-229 8-25 (215)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-45 Score=385.96 Aligned_cols=303 Identities=28% Similarity=0.453 Sum_probs=257.4
Q ss_pred cccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 009003 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKM 248 (547)
Q Consensus 169 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 248 (547)
..|.+..+|.+++|++.++++|..+||..|||+|.++||.++ .|+|++++||||||||++|++|+++++....
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~------ 122 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDP------ 122 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcc------
Confidence 345667889999999999999999999999999999999998 7999999999999999999999999986431
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH
Q 009003 249 LEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL 328 (547)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~ 328 (547)
......++++|||+|||+||.|+++++.+++...++++.+++||.....+...+..+++|+|+||++|+++
T Consensus 123 ---------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~ 193 (434)
T 2db3_A 123 ---------HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDF 193 (434)
T ss_dssp ---------CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHH
T ss_pred ---------cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHH
Confidence 01223468999999999999999999999999889999999999999888888888999999999999999
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
+.+. .+.+.++++|||||||+|++++|...+..|+..+... ..+|+++||||++
T Consensus 194 l~~~---~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------~~~q~l~~SAT~~- 247 (434)
T 2db3_A 194 VDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------PEHQTLMFSATFP- 247 (434)
T ss_dssp HHTT---SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC----------------------SSCEEEEEESCCC-
T ss_pred HHhC---CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC----------------------CCceEEEEeccCC-
Confidence 9654 3678999999999999999999999999999876421 5689999999998
Q ss_pred ChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCc
Q 009003 409 SADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGR 488 (547)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k 488 (547)
..+..++..+ ..++..+...........+.+.+..+....+...|..++..... +
T Consensus 248 ----------------------~~~~~~~~~~--l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~ 302 (434)
T 2db3_A 248 ----------------------EEIQRMAGEF--LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-G 302 (434)
T ss_dssp ----------------------HHHHHHHHTT--CSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-T
T ss_pred ----------------------HHHHHHHHHh--ccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-C
Confidence 2333443332 22333343333333445678888888888899999999987754 4
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+||||+++..|+.++..|...|+.+..+||+|++.+|.+++++|++|..+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 352 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 352 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999998654
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=355.58 Aligned_cols=318 Identities=26% Similarity=0.415 Sum_probs=253.9
Q ss_pred cccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHH-Hh
Q 009003 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA-AK 247 (547)
Q Consensus 169 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~ 247 (547)
..|.+..+|.+++|++.+.++|..+||..|+|+|.++||.++ .++|+++++|||||||++|++|+++.+....... ..
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 345667889999999999999999999999999999999998 7999999999999999999999999986542100 00
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHH
Q 009003 248 MLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWE 327 (547)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~ 327 (547)
.. ...........++++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|..
T Consensus 88 ~~---~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 88 AM---KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD 164 (417)
T ss_dssp HH---HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred cc---ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHH
Confidence 00 000000112234789999999999999999999999888999999999999888888888889999999999999
Q ss_pred HHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 328 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 328 ~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
++... .+.+..+++|||||||+++++++...+..++....... ...+|+++||||++
T Consensus 165 ~l~~~---~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 165 MMERG---KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP--------------------KGVRHTMMFSATFP 221 (417)
T ss_dssp HHHTT---SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC--------------------BTTBEEEEEESCCC
T ss_pred HHHcC---CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC--------------------cCCcEEEEEEEeCC
Confidence 98654 36688999999999999999999999999987543110 13579999999997
Q ss_pred CChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhc-CC
Q 009003 408 LSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVH-GQ 486 (547)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~ 486 (547)
. .+..+...+. .++..+...........+.+.++.+....+...+..++... ..
T Consensus 222 ~-----------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~ 276 (417)
T 2i4i_A 222 K-----------------------EIQMLARDFL--DEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKD 276 (417)
T ss_dssp H-----------------------HHHHHHHHHC--SSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTT
T ss_pred H-----------------------HHHHHHHHHc--CCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCC
Confidence 2 2233333221 12223333333334556788888888889999999999876 46
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 487 ~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+++||||+++..++.++..|...|+.+..+||+|++.+|.+++++|+++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999999999999999999999999987654
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.8e-41 Score=350.28 Aligned_cols=292 Identities=24% Similarity=0.441 Sum_probs=246.7
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
..+|.+++|++.+.++|..+||..|+++|.++++.++ .++++++++|||||||++|++|+++.+.
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~-------------- 100 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLD-------------- 100 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCC--------------
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHh--------------
Confidence 4679999999999999999999999999999999998 6899999999999999999999998752
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
....++++|||+||++|+.|+++.+..++...++.+..++|+.........+..+++|+|+||++|..++...
T Consensus 101 ------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~- 173 (410)
T 2j0s_A 101 ------IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR- 173 (410)
T ss_dssp ------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-
T ss_pred ------hccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-
Confidence 1234578999999999999999999999999999999999999988877777778999999999999998654
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
.+.+..+++|||||||+++++++...+..++..++ ...|+++||||++. +..
T Consensus 174 --~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~--~~~ 225 (410)
T 2j0s_A 174 --SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------------------------PATQVVLISATLPH--EIL 225 (410)
T ss_dssp --SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC------------------------TTCEEEEEESCCCH--HHH
T ss_pred --CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc------------------------cCceEEEEEcCCCH--HHH
Confidence 36688999999999999999999999999988876 56899999999872 111
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccc-hHHHHHHHHHhcCCCcEEEE
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED-KDAYLYYILSVHGQGRTIVF 492 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~LVF 492 (547)
.+... +..++..+...........+.+.+..+.... +...+..++.....+++|||
T Consensus 226 ---------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf 282 (410)
T 2j0s_A 226 ---------------------EMTNK--FMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIF 282 (410)
T ss_dssp ---------------------TTGGG--TCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEE
T ss_pred ---------------------HHHHH--HcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEE
Confidence 11111 1122333333333444556777777776544 88899999988888899999
Q ss_pred eCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|++++.++.++..|...|+.+..+||+|++.+|..+++.|++|..+
T Consensus 283 ~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (410)
T 2j0s_A 283 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 328 (410)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred EcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999999998654
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=340.46 Aligned_cols=294 Identities=22% Similarity=0.411 Sum_probs=243.0
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 172 TEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 172 ~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
.....|.++++++.+.+.|...||..|+++|.++|+.++ .|+++++++|||||||++|++|+++.+..
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----------- 104 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIEL----------- 104 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHHCCT-----------
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHHHhh-----------
Confidence 445789999999999999999999999999999999998 69999999999999999999999987521
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHh
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~ 330 (547)
...+.++|||+||++|+.|+++.+..++...++.+..++|+.........+. ..++|+|+||++|++++.
T Consensus 105 ---------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~ 175 (414)
T 3eiq_A 105 ---------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN 175 (414)
T ss_dssp ---------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHH
T ss_pred ---------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 2245789999999999999999999999988999999999988877666555 678999999999999986
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
.. .+.+..+++|||||||+++++++...+..++..++ ...|+|+||||++.
T Consensus 176 ~~---~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~-- 226 (414)
T 3eiq_A 176 RR---YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------------------SNTQVVLLSATMPS-- 226 (414)
T ss_dssp HT---SSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC------------------------TTCEEEEECSCCCH--
T ss_pred cC---CcccccCcEEEEECHHHhhccCcHHHHHHHHHhCC------------------------CCCeEEEEEEecCH--
Confidence 54 35678899999999999999999999999998886 67899999999872
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcccc-chHHHHHHHHHhcCCCcE
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-DKDAYLYYILSVHGQGRT 489 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~k~ 489 (547)
.+..+... +..++..+...........+.+.+..+... .+...+..++.....+++
T Consensus 227 ---------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (414)
T 3eiq_A 227 ---------------------DVLEVTKK--FMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQA 283 (414)
T ss_dssp ---------------------HHHHHHTT--TCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSC
T ss_pred ---------------------HHHHHHHH--HcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcE
Confidence 12222222 122333344444444555677777777654 588899999998888999
Q ss_pred EEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
||||++++.++.++..|...++.+..+||+|++.+|..+++.|+++..+
T Consensus 284 lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 332 (414)
T 3eiq_A 284 VIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 332 (414)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---
T ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999998754
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.8e-39 Score=333.06 Aligned_cols=291 Identities=30% Similarity=0.527 Sum_probs=240.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
..|.+++|++.+.++|..+||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~--------------- 71 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLE--------------- 71 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCC---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhc---------------
Confidence 568999999999999999999999999999999998 6899999999999999999999998752
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~ 332 (547)
....++++|||+||++|+.|+++.+..++... ++++..++|+.........+. ..++|+|+||++|..++...
T Consensus 72 -----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 72 -----PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp -----CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred -----ccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 12345689999999999999999999998776 789999999988776665554 45799999999999988653
Q ss_pred CCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChh
Q 009003 333 EKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD 411 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 411 (547)
...+.++++|||||||++++ .++...+..++..++ ...|+++||||++..
T Consensus 147 ---~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~-- 197 (391)
T 1xti_A 147 ---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKE-- 197 (391)
T ss_dssp ---SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESSCCST--
T ss_pred ---CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC------------------------CCceEEEEEeeCCHH--
Confidence 35688999999999999986 367778888887766 568999999999843
Q ss_pred HHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEecc-ccccccccceEEEEEccccchHHHHHHHHHhcCCCcEE
Q 009003 412 FRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLT-NMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTI 490 (547)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~-~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~L 490 (547)
+..+...+. . ++..+... ........+.+.+..+....+...+..++.....+++|
T Consensus 198 ---------------------~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l 254 (391)
T 1xti_A 198 ---------------------IRPVCRKFM-Q-DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV 254 (391)
T ss_dssp ---------------------HHHHHHHHC-S-SCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEE
T ss_pred ---------------------HHHHHHHHc-C-CCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEE
Confidence 222322221 1 12222222 22233455778888888889999999999988889999
Q ss_pred EEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 491 VFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|||+++..++.++..|...|+.+..+||+|++.+|..+++.|+++..+
T Consensus 255 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 302 (391)
T 1xti_A 255 IFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302 (391)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS
T ss_pred EEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999987654
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.8e-39 Score=335.45 Aligned_cols=291 Identities=27% Similarity=0.479 Sum_probs=243.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
..+|.+++|++.+.++|..+||..|+++|.++++.++ .++++++++|||||||++|++|++..+..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 4679999999999999999999999999999999998 68999999999999999999999987521
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
...++++|||+||++|+.|+++.+..++...++.+..++|+.........+...++|+|+||++|..++...
T Consensus 86 -------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~- 157 (400)
T 1s2m_A 86 -------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK- 157 (400)
T ss_dssp -------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-
T ss_pred -------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-
Confidence 224568999999999999999999999998899999999999887777777788999999999999988653
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
...+.++++|||||||++++.++...+..++..++ ...|+++||||++. .
T Consensus 158 --~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~--~-- 207 (400)
T 1s2m_A 158 --VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------------------------PTHQSLLFSATFPL--T-- 207 (400)
T ss_dssp --CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC------------------------SSCEEEEEESCCCH--H--
T ss_pred --CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------cCceEEEEEecCCH--H--
Confidence 35688999999999999988778888888887765 56899999999872 2
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEe
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFC 493 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~ 493 (547)
+......... .+..+.... ......+.+++..+....+...+..++.....+++||||
T Consensus 208 -------------------~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~ 265 (400)
T 1s2m_A 208 -------------------VKEFMVKHLH--KPYEINLME-ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFC 265 (400)
T ss_dssp -------------------HHHHHHHHCS--SCEEESCCS-SCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEEC
T ss_pred -------------------HHHHHHHHcC--CCeEEEecc-ccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEE
Confidence 2222222111 111222221 123445777888888888989999999988889999999
Q ss_pred CChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 494 TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+++..++.++..|...|+.+..+||+|+..+|..+++.|+++..+
T Consensus 266 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (400)
T 1s2m_A 266 NSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310 (400)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred ecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999988654
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.7e-38 Score=330.70 Aligned_cols=292 Identities=25% Similarity=0.430 Sum_probs=239.2
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
...+|.++++++.+.++|..+||..|+++|.++|+.++.. ++++++++|||||||++|++|+++.+.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~------------ 90 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE------------ 90 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCC------------
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhh------------
Confidence 4678999999999999999999999999999999999842 399999999999999999999998762
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHh
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~ 330 (547)
....++++|||+||++||.|+++.+..++... ++.+....++...... ....++|+|+||++|..++.
T Consensus 91 --------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~ 159 (412)
T 3fht_A 91 --------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 159 (412)
T ss_dssp --------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred --------hcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHH
Confidence 22345689999999999999999999987764 6777777777654322 23467999999999999985
Q ss_pred cCCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
+. ..+.+.++++|||||||++++ .++...+..++..++ ...|+++||||++.
T Consensus 160 ~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~- 212 (412)
T 3fht_A 160 KL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFED- 212 (412)
T ss_dssp TS--CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC------------------------TTCEEEEEESCCCH-
T ss_pred hc--CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC------------------------CCceEEEEEeecCH-
Confidence 42 345678999999999999986 678888888888876 66899999999982
Q ss_pred hhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhcCCCc
Q 009003 410 ADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVHGQGR 488 (547)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k 488 (547)
.+..+.... ..++..+...........+.+.++.+.. ..+...+..++.....++
T Consensus 213 ----------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (412)
T 3fht_A 213 ----------------------SVWKFAQKV--VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQ 268 (412)
T ss_dssp ----------------------HHHHHHHHH--SSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSE
T ss_pred ----------------------HHHHHHHHh--cCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCC
Confidence 233333332 2334445445444555667777777764 568888888888888899
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+||||+++..|+.++..|...++.+..+||+|++.+|..+++.|+++..+
T Consensus 269 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 318 (412)
T 3fht_A 269 AMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 318 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999999999999999999999998654
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.7e-38 Score=328.48 Aligned_cols=288 Identities=28% Similarity=0.476 Sum_probs=236.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcC--CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG--KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~--~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
..+|.+++|++.+.++|...||..|+|+|.++++.++ .+ +++++++|||||||++|++|++..+.
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~------------ 70 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLL-HNPPRNMIAQSQSGTGKTAAFSLTMLTRVN------------ 70 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-CSSCCCEEEECCTTSCHHHHHHHHHHHHCC------------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCcHHHHHHHHHHHHhc------------
Confidence 4789999999999999999999999999999999998 45 89999999999999999999998752
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhc
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~ 331 (547)
....++++|||+||++|+.|+++.+..++...++.+..++++..... ...+++|+|+||++|..++..
T Consensus 71 --------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~ 138 (395)
T 3pey_A 71 --------PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR 138 (395)
T ss_dssp --------TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT
T ss_pred --------cCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc
Confidence 12346789999999999999999999998888888888887654321 223689999999999998865
Q ss_pred CCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 332 GEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
. ...+.++++|||||||++.+ .++...+..++..++ ...|+++||||++
T Consensus 139 ~---~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~--- 188 (395)
T 3pey_A 139 K---LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP------------------------KDTQLVLFSATFA--- 188 (395)
T ss_dssp T---CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC------------------------TTCEEEEEESCCC---
T ss_pred C---CcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC------------------------CCcEEEEEEecCC---
Confidence 3 36688999999999999987 677788888888776 6689999999987
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhcCCCcE
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVHGQGRT 489 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~ 489 (547)
+.+..+..... .+...+...........+.+.+..+.. ..+...+..++.....+++
T Consensus 189 --------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 246 (395)
T 3pey_A 189 --------------------DAVRQYAKKIV--PNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSS 246 (395)
T ss_dssp --------------------HHHHHHHHHHS--CSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEE
T ss_pred --------------------HHHHHHHHHhC--CCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCE
Confidence 22333333322 223334444444445556777777643 5677888888888788999
Q ss_pred EEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
||||+++..|+.++..|+..|+.+..+||+|++.+|.++++.|++|..+
T Consensus 247 lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 295 (395)
T 3pey_A 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK 295 (395)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC
T ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999999999998654
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-37 Score=320.16 Aligned_cols=286 Identities=29% Similarity=0.527 Sum_probs=239.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
..+|.+++|++.+.+.|..+||..|+++|.++++.++..++++++++|||||||++|++|++..+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~-------------- 70 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN-------------- 70 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC--------------
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc--------------
Confidence 467999999999999999999999999999999999854479999999999999999999988752
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
...+.++|||+||++|+.|+++.+..+....++.+..++|+.........+. +++|+|+||++|..++...
T Consensus 71 -------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~- 141 (367)
T 1hv8_A 71 -------ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG- 141 (367)
T ss_dssp -------SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-
T ss_pred -------ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-
Confidence 1245789999999999999999999999888899999999988776655554 6899999999999988653
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
...+.++++|||||||++.++++...+..++..++ ...|+++||||++.
T Consensus 142 --~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~----- 190 (367)
T 1hv8_A 142 --TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------------------KDKRILLFSATMPR----- 190 (367)
T ss_dssp --CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC------------------------SSCEEEEECSSCCH-----
T ss_pred --CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------CCceEEEEeeccCH-----
Confidence 35688999999999999999999999999998876 66899999999872
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEe
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFC 493 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~ 493 (547)
.+......+ ..+...+.... ...+.+.++.+....+...+..++. ...+++||||
T Consensus 191 ------------------~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~ 245 (367)
T 1hv8_A 191 ------------------EILNLAKKY--MGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFC 245 (367)
T ss_dssp ------------------HHHHHHHHH--CCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEEC
T ss_pred ------------------HHHHHHHHH--cCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEE
Confidence 122222222 11222222221 2346778888888889888888887 4577999999
Q ss_pred CChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 494 TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+++..++.++..|+..|+.+..+||+|+..+|..+++.|+++..+
T Consensus 246 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 246 KTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred CCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 999999999999999999999999999999999999999987543
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=348.04 Aligned_cols=294 Identities=25% Similarity=0.422 Sum_probs=163.6
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
...+|.+++|++.+++.|..+||..|+++|.++|+.++.. ++++|++||||||||++|++|+++.+.
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~------------ 157 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE------------ 157 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCC------------
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHh------------
Confidence 3578999999999999999999999999999999999842 389999999999999999999998752
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHh
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~ 330 (547)
....++++|||+||++||.|+++.+..+.... ++.+....++...... ....++|+|+||++|+.++.
T Consensus 158 --------~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~ 226 (479)
T 3fmp_B 158 --------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (479)
T ss_dssp --------TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred --------hcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHH
Confidence 22345689999999999999999999987754 5677777776554322 23467999999999999986
Q ss_pred cCCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
+. ..+.+.++++|||||||++++ .++...+..++..++ ..+|+|+||||++.
T Consensus 227 ~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~- 279 (479)
T 3fmp_B 227 KL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFED- 279 (479)
T ss_dssp TS--CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC------------------------TTSEEEEEESCCCH-
T ss_pred hc--CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC------------------------ccceEEEEeCCCCH-
Confidence 42 346678999999999999987 577778888887776 66899999999982
Q ss_pred hhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc-cchHHHHHHHHHhcCCCc
Q 009003 410 ADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE-EDKDAYLYYILSVHGQGR 488 (547)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k 488 (547)
.+..+...+ .+++..+...........+.+.++.+.. ..+...++.++.....++
T Consensus 280 ----------------------~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (479)
T 3fmp_B 280 ----------------------SVWKFAQKV--VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQ 335 (479)
T ss_dssp ----------------------HHHHHHHHH--SSSEEEEEEC-------------------------------------
T ss_pred ----------------------HHHHHHHHH--cCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCc
Confidence 233333332 3445555555544555567777777764 567788888888777889
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCC
Q 009003 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRP 540 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~ 540 (547)
+||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|..+..
T Consensus 336 ~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iL 387 (479)
T 3fmp_B 336 AMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387 (479)
T ss_dssp ----------------------------------------------------
T ss_pred eEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 9999999999999999999999999999999999999999999999876543
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.9e-39 Score=334.30 Aligned_cols=292 Identities=24% Similarity=0.427 Sum_probs=170.1
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
....|.+++|++.+.+.+..+||..|+++|.++++.++ .++++++++|||+|||++|++|+++.+.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~------------- 84 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRID------------- 84 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCC-------------
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhh-------------
Confidence 34679999999999999999999999999999999998 6899999999999999999999998752
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
....++++|||+||++|+.|+++.+..++...++.+..++|+.........+. +++|+|+||++|...+...
T Consensus 85 -------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~ 156 (394)
T 1fuu_A 85 -------TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR 156 (394)
T ss_dssp -------TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT
T ss_pred -------ccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC
Confidence 12346789999999999999999999999888999999999988766555444 6899999999999988653
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF 412 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 412 (547)
.+.+.++++|||||||+++++++...+..++..++ ...|+++||||++.
T Consensus 157 ---~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~---- 205 (394)
T 1fuu_A 157 ---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPN---- 205 (394)
T ss_dssp ---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCCH----
T ss_pred ---CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC------------------------CCceEEEEEEecCH----
Confidence 35678999999999999999999999999999887 66899999999972
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcccc-chHHHHHHHHHhcCCCcEEE
Q 009003 413 RKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEE-DKDAYLYYILSVHGQGRTIV 491 (547)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~k~LV 491 (547)
.+..+...+. . .+..+...........+.+.+..+... .+...+..++.....+++||
T Consensus 206 -------------------~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lV 264 (394)
T 1fuu_A 206 -------------------DVLEVTTKFM-R-NPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVI 264 (394)
T ss_dssp -------------------HHHHHHHHHC-C-SCEEEEECC---------------------------------------
T ss_pred -------------------HHHHHHHHhc-C-CCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEE
Confidence 2222222221 1 122222222223334455556555543 37777888887777889999
Q ss_pred EeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 492 FCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 492 F~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
||+++..++.++..|+..++.+..+||+|+..+|..+++.|+++..+
T Consensus 265 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 311 (394)
T 1fuu_A 265 FCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 311 (394)
T ss_dssp -----------------------------------------------
T ss_pred EECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999999999999999999988654
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.2e-38 Score=343.36 Aligned_cols=299 Identities=26% Similarity=0.406 Sum_probs=226.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHh-cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcC
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAH-QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYA 260 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~-~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~ 260 (547)
|++.++++|..+||..|+|+|.++|+.++. .++++|++||||||||++|++|+++.+...+ ..
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~----------------~~ 91 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK----------------FD 91 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT----------------TS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc----------------cc
Confidence 999999999999999999999999999984 3789999999999999999999999886542 12
Q ss_pred CCCCeEEEEEccCHHHHHHHHHHHHHhhc----CCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcCCCC
Q 009003 261 PKGHLRALIITPTRELALQVTDHLKGVAK----GINVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 261 ~~~~~~~lil~Ptr~La~qv~~~l~~~~~----~~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
...++++|||+||++||.|+++.+..++. ...+.+..++|+.........+. .+++|+||||++|+.++... .
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--~ 169 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--S 169 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--H
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--c
Confidence 33467899999999999999999998863 23567888899988777666553 47999999999999988642 1
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
...+..+++|||||||+|++++|...+..|+..++... ......+|+|+||||++.
T Consensus 170 ~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~-----------------~~~~~~~~~l~~SAT~~~------- 225 (579)
T 3sqw_A 170 NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN-----------------SKSADNIKTLLFSATLDD------- 225 (579)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC-----------------SSCTTCCEEEEEESSCCT-------
T ss_pred ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhh-----------------cccccCceEEEEeccCCh-------
Confidence 24588999999999999999999999999988775211 111146799999999983
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccc--cccccccceEEEEEcccc-c-hH---HHHHHHHHh-cCCC
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTN--MCVLANKLEESFIECKEE-D-KD---AYLYYILSV-HGQG 487 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~-~-k~---~~l~~ll~~-~~~~ 487 (547)
.+..+...+...+....+.... .......+.+.++.+... . .. ..+...+.. .+.+
T Consensus 226 ----------------~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (579)
T 3sqw_A 226 ----------------KVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNY 289 (579)
T ss_dssp ----------------HHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCC
T ss_pred ----------------HHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCC
Confidence 2222222222222222222211 112233455555555432 2 22 223333333 4578
Q ss_pred cEEEEeCChHHHHHHHHHHHHc---CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 488 RTIVFCTSIAALRHISSLLKIL---GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 488 k~LVF~~s~~~a~~L~~~L~~~---g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++||||+|+..|+.++..|... ++.+..+||+|++.+|.+++++|+++..+
T Consensus 290 ~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~ 343 (579)
T 3sqw_A 290 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 343 (579)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred cEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe
Confidence 9999999999999999999987 99999999999999999999999998654
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.3e-37 Score=337.42 Aligned_cols=300 Identities=26% Similarity=0.410 Sum_probs=225.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHh-cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 009003 181 RLHPLLMKSIYRLQFKEPTPIQKACIPAAAH-QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKY 259 (547)
Q Consensus 181 ~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~-~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~ 259 (547)
.|++.+++++..+||..|+|+|.++|+.++. .++|+|++||||||||++|++|+++++...+ .
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~----------------~ 141 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK----------------F 141 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT----------------T
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc----------------c
Confidence 3999999999999999999999999999984 3789999999999999999999999986542 1
Q ss_pred CCCCCeEEEEEccCHHHHHHHHHHHHHhhcC----CCcEEEEEEcCCCHHHHHHHh-cCCCcEEEeChHHHHHHHhcCCC
Q 009003 260 APKGHLRALIITPTRELALQVTDHLKGVAKG----INVRVVPIVGGMSTEKQERLL-KARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 260 ~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~----~~~~v~~~~g~~~~~~~~~~~-~~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
....++++|||+||++||.|+++.+..+... ..+.+..++|+.........+ ..+++|+||||++|..++.+.
T Consensus 142 ~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-- 219 (563)
T 3i5x_A 142 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-- 219 (563)
T ss_dssp SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--
T ss_pred cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc--
Confidence 2234578999999999999999999987542 246688889998877665555 447899999999999988642
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
....++.+++|||||||+|++++|...+..|+..++... ......+|+|+||||++..
T Consensus 220 ~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~-----------------~~~~~~~~~l~~SAT~~~~----- 277 (563)
T 3i5x_A 220 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN-----------------SKSADNIKTLLFSATLDDK----- 277 (563)
T ss_dssp HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC-----------------SSCTTCCEEEEEESSCCTH-----
T ss_pred cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcc-----------------ccCccCceEEEEEccCCHH-----
Confidence 124588899999999999999999999999988775211 1111467999999999832
Q ss_pred HhhhcccccccccCCcchHHHHHHHhcccCceeEEeccc--cccccccceEEEEEcccc-chH----HHHHHHHHh-cCC
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTN--MCVLANKLEESFIECKEE-DKD----AYLYYILSV-HGQ 486 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~-~k~----~~l~~ll~~-~~~ 486 (547)
+..+.......+....+.... .......+.+.+..+... .+. ..+...+.. ...
T Consensus 278 ------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (563)
T 3i5x_A 278 ------------------VQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSN 339 (563)
T ss_dssp ------------------HHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTC
T ss_pred ------------------HHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCC
Confidence 222222222222222222211 112233455555555432 222 222333332 457
Q ss_pred CcEEEEeCChHHHHHHHHHHHHc---CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 487 GRTIVFCTSIAALRHISSLLKIL---GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 487 ~k~LVF~~s~~~a~~L~~~L~~~---g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|+++..+
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999987 99999999999999999999999998654
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4e-35 Score=298.10 Aligned_cols=268 Identities=28% Similarity=0.461 Sum_probs=217.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
|++.+.++|..+||..|+|+|.++++.++ +++++++++|||+|||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 57889999999999999999999999998 68999999999999999999998763
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCC
Q 009003 262 KGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHT 341 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~ 341 (547)
+.++|||+||++|+.|+++.+..++...++.+..++|+.........+.. ++|+|+||++|..++... .+.+.+
T Consensus 56 --~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~---~~~~~~ 129 (337)
T 2z0m_A 56 --GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKG---VIDLSS 129 (337)
T ss_dssp --TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTT---SCCGGG
T ss_pred --cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcC---Ccchhh
Confidence 35799999999999999999999988889999999999888766555554 899999999999988653 355788
Q ss_pred ccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhccc
Q 009003 342 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSL 421 (547)
Q Consensus 342 l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~ 421 (547)
+++|||||||++.++++...+..++..++ ...++++||||++.
T Consensus 130 ~~~iViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~SAT~~~------------- 172 (337)
T 2z0m_A 130 FEIVIIDEADLMFEMGFIDDIKIILAQTS------------------------NRKITGLFSATIPE------------- 172 (337)
T ss_dssp CSEEEEESHHHHHHTTCHHHHHHHHHHCT------------------------TCSEEEEEESCCCH-------------
T ss_pred CcEEEEEChHHhhccccHHHHHHHHhhCC------------------------cccEEEEEeCcCCH-------------
Confidence 99999999999999999999999998887 56799999999972
Q ss_pred ccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHH
Q 009003 422 KSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRH 501 (547)
Q Consensus 422 ~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~ 501 (547)
.+......+. .++..+... .....+.+.++.+....+. ....+.....+++||||++++.++.
T Consensus 173 ----------~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~ 235 (337)
T 2z0m_A 173 ----------EIRKVVKDFI--TNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAK 235 (337)
T ss_dssp ----------HHHHHHHHHS--CSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHH
T ss_pred ----------HHHHHHHHhc--CCceeeecc---cccCCceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHH
Confidence 2222222221 112222111 2233455666666554433 3356666778899999999999999
Q ss_pred HHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 502 ISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 502 L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++..|. .+..+||+|+..+|.+++++|+++..+
T Consensus 236 l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~ 268 (337)
T 2z0m_A 236 LVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD 268 (337)
T ss_dssp HHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred HHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc
Confidence 999886 688999999999999999999987643
No 15
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=351.41 Aligned_cols=302 Identities=16% Similarity=0.136 Sum_probs=212.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
..|..+++++.+...+...++..|+++|.++|+.++ .|+++|++||||||||++|++|+++.+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~-~g~dvLV~ApTGSGKTlva~l~i~~~l~--------------- 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLK--------------- 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHT-TTCCEEEECCSSSHHHHHHHHHHHHHHH---------------
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHHh---------------
Confidence 456777777777766666667789999999999986 7999999999999999999999998862
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
.+.++||++||++||.|+++.+..++. .+.+++|+.. +..+++|+||||++|..++.++
T Consensus 226 --------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~-- 284 (1108)
T 3l9o_A 226 --------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRG-- 284 (1108)
T ss_dssp --------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHC--
T ss_pred --------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcC--
Confidence 246899999999999999999998855 5666888765 3456899999999999998664
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
...+.++++|||||||+|+++++...+..++..++ ..+|+|+||||+++..++..
T Consensus 285 -~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~------------------------~~~qvl~lSATipn~~e~a~ 339 (1108)
T 3l9o_A 285 -SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFAE 339 (1108)
T ss_dssp -SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC------------------------TTSEEEEEECSCSSCHHHHH
T ss_pred -ccccccCCEEEEhhhhhccccchHHHHHHHHHhcC------------------------CCceEEEEcCCCCCHHHHHH
Confidence 24478899999999999999899999999999987 67899999999998888888
Q ss_pred HhhhcccccccccCCc---chHHHHHHHhcccCceeEEeccccc------cccccceE-----------------EEEE-
Q 009003 415 KLKHGSLKSKQSVNGL---NSIETLSERAGMRANVAIVDLTNMC------VLANKLEE-----------------SFIE- 467 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~---~~i~~l~~~~~~~~~~~~i~~~~~~------~~~~~i~~-----------------~~~~- 467 (547)
|+..........+... ..+..............+++..... .....+.. .+..
T Consensus 340 ~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 419 (1108)
T 3l9o_A 340 WICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGG 419 (1108)
T ss_dssp HHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC------------------------
T ss_pred HHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccc
Confidence 8764322111000000 0000000000000000000000000 00000000 0000
Q ss_pred ---ccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCc--------------------------------
Q 009003 468 ---CKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID-------------------------------- 512 (547)
Q Consensus 468 ---~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~-------------------------------- 512 (547)
.........++..+.....+++||||+++..|+.++..|...++.
T Consensus 420 ~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l 499 (1108)
T 3l9o_A 420 SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHI 499 (1108)
T ss_dssp -----CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHH
Confidence 000122233444455566789999999999999999998654332
Q ss_pred -------eEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 513 -------VWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 513 -------v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|.++||+|++.+|..+++.|++|..+
T Consensus 500 ~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik 532 (1108)
T 3l9o_A 500 LPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 532 (1108)
T ss_dssp THHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC
T ss_pred HHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe
Confidence 79999999999999999999998765
No 16
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.9e-35 Score=285.83 Aligned_cols=196 Identities=34% Similarity=0.497 Sum_probs=175.0
Q ss_pred cccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 009003 169 EISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKM 248 (547)
Q Consensus 169 ~~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 248 (547)
..|.+..+|.++++++.+.+.+..+||..|+++|.++|+.++ .|+++++++|||||||++|++|+++++....
T Consensus 23 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~------ 95 (242)
T 3fe2_A 23 NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQP------ 95 (242)
T ss_dssp CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSC------
T ss_pred CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhcc------
Confidence 346677899999999999999999999999999999999998 6999999999999999999999999874321
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHH
Q 009003 249 LEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWEL 328 (547)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~ 328 (547)
......++++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.++
T Consensus 96 ---------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~ 166 (242)
T 3fe2_A 96 ---------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDF 166 (242)
T ss_dssp ---------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred ---------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHH
Confidence 01123467899999999999999999999999899999999999999888888888899999999999999
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
+... ...+.++++|||||||++++++|...+..|+..++ ..+|+++||||++
T Consensus 167 l~~~---~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 167 LECG---KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR------------------------PDRQTLMWSATWP 218 (242)
T ss_dssp HHHT---SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC------------------------SSCEEEEEESCCC
T ss_pred HHcC---CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC------------------------ccceEEEEEeecC
Confidence 9654 35689999999999999999999999999998887 6689999999998
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.8e-34 Score=312.37 Aligned_cols=278 Identities=15% Similarity=0.178 Sum_probs=206.6
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 009003 178 NELRLHPLLMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEA 256 (547)
Q Consensus 178 ~~l~l~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~ 256 (547)
.++++++.+...|.. +||..|+|+|.++|+.++ .|+|+++++|||+|||++|++|++..
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~~------------------- 83 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALCS------------------- 83 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHTS-------------------
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHHc-------------------
Confidence 457899999999998 699999999999999998 69999999999999999999998752
Q ss_pred hhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh------cCCCcEEEeChHHHH---H
Q 009003 257 EKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL------KARPEVVVGTPGRLW---E 327 (547)
Q Consensus 257 ~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~dIlv~TP~~l~---~ 327 (547)
.+++|||+|+++|+.|+++.+..+ ++.+..++|+.........+ ...++|+|+||++|. .
T Consensus 84 -------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~ 152 (591)
T 2v1x_A 84 -------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM 152 (591)
T ss_dssp -------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH
T ss_pred -------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH
Confidence 358999999999999999999987 78888999998876554322 457899999999874 2
Q ss_pred HHhcCCCCcccCCCccEEEEeccchhhhcC--ChHHHH---HHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEE
Q 009003 328 LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVF 402 (547)
Q Consensus 328 ~l~~~~~~~~~l~~l~~lViDEah~ll~~~--~~~~l~---~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 402 (547)
++.. ......+..+.+|||||||++++|| |...+. .+...+ ...|+|+|
T Consensus 153 ~~~~-l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-------------------------~~~~ii~l 206 (591)
T 2v1x_A 153 FMSR-LEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------PNASLIGL 206 (591)
T ss_dssp HHHH-HHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-------------------------TTSEEEEE
T ss_pred HHHH-HHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-------------------------CCCcEEEE
Confidence 2211 0112457899999999999999988 544333 333443 35799999
Q ss_pred eccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccc--cchHHHHHHH
Q 009003 403 SATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKE--EDKDAYLYYI 480 (547)
Q Consensus 403 SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~l 480 (547)
|||++... ...+...+... ....+... ....++...+..... ..+...|..+
T Consensus 207 SAT~~~~v----------------------~~~i~~~l~~~-~~~~~~~~---~~r~nl~~~v~~~~~~~~~~~~~l~~~ 260 (591)
T 2v1x_A 207 TATATNHV----------------------LTDAQKILCIE-KCFTFTAS---FNRPNLYYEVRQKPSNTEDFIEDIVKL 260 (591)
T ss_dssp ESSCCHHH----------------------HHHHHHHTTCC-SCEEEECC---CCCTTEEEEEEECCSSHHHHHHHHHHH
T ss_pred ecCCCHHH----------------------HHHHHHHhCCC-CcEEEecC---CCCcccEEEEEeCCCcHHHHHHHHHHH
Confidence 99997211 11122222222 22222211 112223322222221 2344566666
Q ss_pred HHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 481 LSV-HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 481 l~~-~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+.. +..+++||||+|++.|+.++..|...|+.+..|||+|++.+|.++++.|+++..+
T Consensus 261 l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 319 (591)
T 2v1x_A 261 INGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ 319 (591)
T ss_dssp HTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred HHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 653 3678999999999999999999999999999999999999999999999988654
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-34 Score=311.37 Aligned_cols=278 Identities=15% Similarity=0.188 Sum_probs=213.7
Q ss_pred ccccccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
+..|++++|++.+.+.|.. +||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL--------------- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS---------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHHh---------------
Confidence 3578999999999999998 899999999999999998 79999999999999999999998842
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH----HhcCCCcEEEeChHHHHHH
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER----LLKARPEVVVGTPGRLWEL 328 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~dIlv~TP~~l~~~ 328 (547)
..++|||+|+++|+.|+++.+..+ ++.+..++++........ .....++|+|+||++|...
T Consensus 65 -----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~ 129 (523)
T 1oyw_A 65 -----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129 (523)
T ss_dssp -----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST
T ss_pred -----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh
Confidence 247999999999999999999886 788888888887654432 2345789999999998522
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcC--ChH---HHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEe
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENG--HFR---ELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFS 403 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~--~~~---~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 403 (547)
. ....+...++.+|||||||++++|| |.. .+..++..++ ..++++||
T Consensus 130 ~---~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------------------------~~~~i~lS 181 (523)
T 1oyw_A 130 N---FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------------------------TLPFMALT 181 (523)
T ss_dssp T---HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------------------------TSCEEEEE
T ss_pred H---HHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-------------------------CCCEEEEe
Confidence 1 1112345789999999999999887 433 3444455553 46899999
Q ss_pred ccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh
Q 009003 404 ATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV 483 (547)
Q Consensus 404 ATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 483 (547)
||++... ...+....++......+... ...++. +.......+...+..++..
T Consensus 182 AT~~~~~----------------------~~~i~~~l~~~~~~~~~~~~----~r~~l~--~~v~~~~~~~~~l~~~l~~ 233 (523)
T 1oyw_A 182 ATADDTT----------------------RQDIVRLLGLNDPLIQISSF----DRPNIR--YMLMEKFKPLDQLMRYVQE 233 (523)
T ss_dssp SCCCHHH----------------------HHHHHHHHTCCSCEEEECCC----CCTTEE--EEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHH----------------------HHHHHHHhCCCCCeEEeCCC----CCCceE--EEEEeCCCHHHHHHHHHHh
Confidence 9987321 12223333333222222111 112232 3333445677788888888
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 484 HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 484 ~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+..+++||||+|++.++.++..|+..|+.+..|||+|++.+|..+++.|+++..+
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 288 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 8788999999999999999999999999999999999999999999999998654
No 19
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=277.52 Aligned_cols=197 Identities=31% Similarity=0.445 Sum_probs=165.1
Q ss_pred cccccccccccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHH
Q 009003 168 AEISTEFDAWNE-LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAA 246 (547)
Q Consensus 168 ~~~~~~~~~f~~-l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~ 246 (547)
...|.+...|.+ +++++.+.+++..+||..|+++|.++|+.++ +|+|+++++|||||||++|++|++.++......
T Consensus 12 ~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~-- 88 (228)
T 3iuy_A 12 RLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS-- 88 (228)
T ss_dssp CCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred CcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccch--
Confidence 345677788988 7999999999999999999999999999998 799999999999999999999999987543211
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHH
Q 009003 247 KMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLW 326 (547)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~ 326 (547)
.....++++|||+||++||.|+++.+..+. ..++.+..++|+.....+...+..+++|+|+||++|.
T Consensus 89 ------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~ 155 (228)
T 3iuy_A 89 ------------REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLN 155 (228)
T ss_dssp ----------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHH
T ss_pred ------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 112356789999999999999999999986 4588899999998887777777888999999999999
Q ss_pred HHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccC
Q 009003 327 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATI 406 (547)
Q Consensus 327 ~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 406 (547)
.++... ...++++++|||||||++++++|...+..++..++ ..+|+++||||+
T Consensus 156 ~~~~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~ 208 (228)
T 3iuy_A 156 DLQMNN---SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR------------------------PDRQTVMTSATW 208 (228)
T ss_dssp HHHHTT---CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC------------------------SSCEEEEEESCC
T ss_pred HHHHcC---CcCcccceEEEEECHHHHhccchHHHHHHHHHhCC------------------------cCCeEEEEEeeC
Confidence 988653 36689999999999999999999999999999987 678999999999
Q ss_pred C
Q 009003 407 A 407 (547)
Q Consensus 407 ~ 407 (547)
+
T Consensus 209 ~ 209 (228)
T 3iuy_A 209 P 209 (228)
T ss_dssp C
T ss_pred C
Confidence 8
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-35 Score=316.74 Aligned_cols=289 Identities=24% Similarity=0.374 Sum_probs=200.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcC--CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG--KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLED 251 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~--~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 251 (547)
...|...++++.+.+.+...||..|+++|.++|+.++ ++ +++|+++|||||||++|++|++..+..
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~-~~~~~~~ll~apTGsGKT~~~~~~il~~l~~----------- 185 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLL-SNPPRNMIGQSQSGTGKTAAFALTMLSRVDA----------- 185 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHH-CSSCCCEEEECCSSTTSHHHHHHHHHHHSCT-----------
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHH-cCCCCCEEEECCCCccHHHHHHHHHHHHHHh-----------
Confidence 3345566789999999999999999999999999998 45 999999999999999999999987622
Q ss_pred hhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhc
Q 009003 252 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 252 ~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~ 331 (547)
...++++|||+||++|+.|+++.+..++...++.+....++.... .....++|+|+||++|...+..
T Consensus 186 ---------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~ 252 (508)
T 3fho_A 186 ---------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKR 252 (508)
T ss_dssp ---------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT
T ss_pred ---------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHc
Confidence 234578999999999999999999999887777776666554332 2234789999999999998865
Q ss_pred CCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 332 GEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
. .+.+.++++|||||||++.+ .++...+..++..++ ...|+|+||||++.
T Consensus 253 ~---~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~-- 303 (508)
T 3fho_A 253 R---QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP------------------------RNTQIVLFSATFSE-- 303 (508)
T ss_dssp T---CSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC------------------------TTCEEEEEESCCST--
T ss_pred C---CccccCCCEEEEechhhhcccCCcHHHHHHHHHhCC------------------------cCCeEEEEeCCCCH--
Confidence 4 35688999999999999987 678889999998887 67899999999983
Q ss_pred hHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc-ccchHHHHHHHHHhcCCCcE
Q 009003 411 DFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK-EEDKDAYLYYILSVHGQGRT 489 (547)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~ 489 (547)
.+..+...+ ..++..+...........+.+.+..+. ...+...+..++.....+++
T Consensus 304 ---------------------~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 360 (508)
T 3fho_A 304 ---------------------RVEKYAERF--APNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS 360 (508)
T ss_dssp ---------------------HHHHHHHHH--STTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCE
T ss_pred ---------------------HHHHHHHHh--cCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcE
Confidence 233333332 222333333333344445566666664 45677788888887788999
Q ss_pred EEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 490 IVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 490 LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
||||+++.+|+.++..|...++.+..+||+|+..+|..+++.|++|..+.
T Consensus 361 LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~V 410 (508)
T 3fho_A 361 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKV 410 (508)
T ss_dssp EEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCC
T ss_pred EEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999999999999999999999999999999887653
No 21
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.1e-34 Score=300.74 Aligned_cols=275 Identities=17% Similarity=0.166 Sum_probs=201.7
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCC
Q 009003 186 LMKSIYR-LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGH 264 (547)
Q Consensus 186 l~~~l~~-~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (547)
+.+.+.. +|| .|+|+|.++++.++ +|+++++++|||||||++|++|++..+ ..+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~-----------------------~~~ 64 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RKG 64 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHH-----------------------TTT
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHh-----------------------cCC
Confidence 4444544 466 89999999999998 689999999999999999999988764 235
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCH---HHHHHHhcC-CCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMST---EKQERLLKA-RPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~-~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
+++|||+||++||.|+++.+..++. .++++..++|+... ..+...+.. .++|+|+||++|..++.. +.+.
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~ 138 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQK 138 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccc
Confidence 7899999999999999999999888 89999999999987 444445544 499999999999887752 6678
Q ss_pred CccEEEEeccchhhh-----------cCChHH-HHHHHHhCCCCCCCCCCCCcccccccccccc-cCCCcEEEEEeccCC
Q 009003 341 TLSFFVLDEADRMIE-----------NGHFRE-LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSL-QRKKRQTLVFSATIA 407 (547)
Q Consensus 341 ~l~~lViDEah~ll~-----------~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~i~~SATl~ 407 (547)
++++|||||||++.. ++|... +..++..++... .+..+ ....+|+++||||+.
T Consensus 139 ~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 139 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK--------------IYERPKNLKPGILVVSSATAK 204 (414)
T ss_dssp CCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTC--------------CCCCCTTCCCCEEEESSCCSS
T ss_pred cccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccch--------------hhhhcccCCCceEEEEecCCC
Confidence 999999999987653 778777 788887764110 00000 014579999999943
Q ss_pred CChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCC
Q 009003 408 LSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQG 487 (547)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 487 (547)
+... .. .+.... +. +...........+.+.++.+ .+...|..++... ++
T Consensus 205 ~~~~-~~--------------------~~~~~~-~~-----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~ 253 (414)
T 3oiy_A 205 PRGI-RP--------------------LLFRDL-LN-----FTVGRLVSVARNITHVRISS---RSKEKLVELLEIF-RD 253 (414)
T ss_dssp CCSS-TT--------------------HHHHHH-HS-----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHHH-CS
T ss_pred cchh-HH--------------------HHHHHh-hc-----cCcCccccccccchheeecc---CHHHHHHHHHHHc-CC
Confidence 2110 00 000100 00 11111222334466666655 4667778888774 58
Q ss_pred cEEEEeCChHHHHHHHHHHHHcCCceE-EecCCcCHHHHHHHHHHHHhhhhcCCCC
Q 009003 488 RTIVFCTSIAALRHISSLLKILGIDVW-TLHAQMQQRARLKLFSQMITWIRKRPKG 542 (547)
Q Consensus 488 k~LVF~~s~~~a~~L~~~L~~~g~~v~-~lhg~m~~~eR~~il~~F~~~~~k~~~g 542 (547)
++||||+++..|+.++..|+..|+.+. .+||. +|. ++.|++|..+...+
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 999999999999999999999999998 99995 444 99999987654433
No 22
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=286.80 Aligned_cols=185 Identities=32% Similarity=0.549 Sum_probs=160.9
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcC--CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQG--KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLE 250 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~--~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 250 (547)
...+|.+++|++.++++|..+||..|+++|.++||.++ .| +|+|++||||||||++|++|+++++.
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~----------- 157 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVE----------- 157 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SSSCCCEEEECCTTSSHHHHHHHHHHHHCC-----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCCccHHHHHHHHHhhh-----------
Confidence 35789999999999999999999999999999999998 45 99999999999999999999998862
Q ss_pred hhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHH
Q 009003 251 DKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELM 329 (547)
Q Consensus 251 ~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l 329 (547)
....++++|||+|||+||.|+++.+..++... ++.+..++|+...... ...+++|+||||++|++++
T Consensus 158 ---------~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 158 ---------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWC 225 (300)
T ss_dssp ---------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHH
T ss_pred ---------ccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHH
Confidence 22346789999999999999999999998765 6888888888765332 2457899999999999999
Q ss_pred hcCCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 330 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
.+. ..+.++++++|||||||+|++ .++...+..|+..++ ..+|+|+||||++
T Consensus 226 ~~~--~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~------------------------~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 226 SKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFE 278 (300)
T ss_dssp TTT--CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC------------------------TTCEEEEEESCCC
T ss_pred Hhc--CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC------------------------CCCEEEEEeccCC
Confidence 642 346689999999999999998 688899999998887 6789999999998
No 23
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=275.60 Aligned_cols=187 Identities=39% Similarity=0.678 Sum_probs=169.7
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
..+|.++++++.+.++|..+||..|+++|.++++.++ +|+++++++|||||||++|++|+++.+...
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------------ 108 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLET------------ 108 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcC------------
Confidence 4679999999999999999999999999999999998 799999999999999999999999987532
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
..++++|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|..++.+.
T Consensus 109 --------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~- 179 (249)
T 3ber_A 109 --------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT- 179 (249)
T ss_dssp --------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-
T ss_pred --------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-
Confidence 23578999999999999999999999998899999999999988887778889999999999999988652
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
..+.+..+++|||||||+++++++...+..++..++ ..+|+++||||++
T Consensus 180 -~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~ 228 (249)
T 3ber_A 180 -KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------RDRKTFLFSATMT 228 (249)
T ss_dssp -TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC------------------------SSSEEEEEESSCC
T ss_pred -CCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC------------------------CCCeEEEEeccCC
Confidence 235688999999999999999999999999999887 5689999999998
No 24
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.6e-34 Score=279.23 Aligned_cols=200 Identities=35% Similarity=0.580 Sum_probs=170.3
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
+..+|.+++|++.+.++|..+||..|+++|.++|+.++ .++++++++|||||||++|++|+++++......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~-------- 91 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN-------- 91 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccc--------
Confidence 46789999999999999999999999999999999998 689999999999999999999999987532100
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
........++++|||+||++||.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|..++...
T Consensus 92 ---~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 92 ---QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp --------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ---cccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 00111234578999999999999999999999988899999999999888777778889999999999999998654
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
...+.++++|||||||++++++|...+..|+..+.... ...+|+++||||++
T Consensus 169 ---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 169 ---KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS--------------------GINRQTLMFSATFP 220 (253)
T ss_dssp ---SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC--------------------GGGCEEEEEESSCC
T ss_pred ---CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC--------------------CCCcEEEEEEEeCC
Confidence 36689999999999999999999999999998654210 02579999999998
No 25
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=277.87 Aligned_cols=190 Identities=35% Similarity=0.539 Sum_probs=165.6
Q ss_pred cccccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 175 DAWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 175 ~~f~~l~--l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
..|.+++ +++.+++.|..+||..|+++|.++++.++ .++|+++++|||||||++|++|+++.+...+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---------- 120 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---------- 120 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhcc----------
Confidence 4466666 99999999999999999999999999998 6899999999999999999999999886431
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
.....++++|||+||++||.|+++.+..++...++.+..++|+.........+..+++|+|+||++|..++...
T Consensus 121 ------~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~ 194 (262)
T 3ly5_A 121 ------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT 194 (262)
T ss_dssp ------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc
Confidence 11223578999999999999999999999998999999999999988877777778999999999999888653
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
..+.+.++++|||||||++++++|...+..|+..++ ..+|+|+||||++
T Consensus 195 --~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 195 --PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP------------------------TRRQTMLFSATQT 243 (262)
T ss_dssp --TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSC------------------------SSSEEEEECSSCC
T ss_pred --CCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCC------------------------CCCeEEEEEecCC
Confidence 235688999999999999999999999999999997 6689999999998
No 26
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.8e-33 Score=272.31 Aligned_cols=190 Identities=31% Similarity=0.557 Sum_probs=158.5
Q ss_pred ccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhh
Q 009003 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKML 249 (547)
Q Consensus 170 ~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 249 (547)
.+.+..+|.+++|++.+.++|..+||..|+++|.++|+.++ .++++++++|||||||++|++|+++.+.
T Consensus 25 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~---------- 93 (237)
T 3bor_A 25 WNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLE---------- 93 (237)
T ss_dssp --CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCC----------
T ss_pred CCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHH----------
Confidence 44556889999999999999999999999999999999998 6899999999999999999999998752
Q ss_pred hhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCC-CcEEEeChHHHHHH
Q 009003 250 EDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKAR-PEVVVGTPGRLWEL 328 (547)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-~dIlv~TP~~l~~~ 328 (547)
....++++|||+||++|+.|+++.+..++...++.+..++|+.........+..+ ++|+|+||++|..+
T Consensus 94 ----------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~ 163 (237)
T 3bor_A 94 ----------IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDM 163 (237)
T ss_dssp ----------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHH
T ss_pred ----------hcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHH
Confidence 1234578999999999999999999999988889999999988776665555544 89999999999999
Q ss_pred HhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 329 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
+... .+.+..+++|||||||+++++++...+..++..++ ..+|+|+||||++
T Consensus 164 l~~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~~SAT~~ 215 (237)
T 3bor_A 164 LNRR---YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------------------TSIQVVLLSATMP 215 (237)
T ss_dssp HHTT---SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCC
T ss_pred HHhC---CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC------------------------CCCeEEEEEEecC
Confidence 8653 35688899999999999999999999999999887 6789999999998
No 27
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=270.17 Aligned_cols=191 Identities=39% Similarity=0.583 Sum_probs=165.7
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
....|.++++++.+.+.|...||..|+++|.++++.++ +|+++++++|||||||++|++|+++.+....
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~---------- 91 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ---------- 91 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc----------
Confidence 35779999999999999999999999999999999998 7999999999999999999999999886431
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG 332 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~ 332 (547)
.....++++|||+||++||.|+++.+..++...++.+..++|+.........+ .+++|+|+||++|..++...
T Consensus 92 ------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~ 164 (236)
T 2pl3_A 92 ------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDET 164 (236)
T ss_dssp ------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHC
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhc
Confidence 11223578999999999999999999999888889999999998776555544 57899999999999888643
Q ss_pred CCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 333 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 333 ~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
..+.+.++++|||||||+++++++...+..++..++ ..+|+++||||++
T Consensus 165 --~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 165 --VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------------------KKRQTLLFSATQT 213 (236)
T ss_dssp --SSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSC------------------------TTSEEEEEESSCC
T ss_pred --CCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCC------------------------CCCeEEEEEeeCC
Confidence 235678999999999999999999999999999987 6789999999998
No 28
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-33 Score=262.21 Aligned_cols=185 Identities=34% Similarity=0.628 Sum_probs=166.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
.+|++++|++.+++.+..+||..|+++|.++++.++ +++++++++|||||||++|++|+++.+.
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~--------------- 66 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLD--------------- 66 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCC---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhc---------------
Confidence 468999999999999999999999999999999998 6899999999999999999999998752
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
....++++||++||++|+.|+++.+..++... ++.+..++|+.........+..+++|+|+||++|..++.+.
T Consensus 67 -----~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~- 140 (206)
T 1vec_A 67 -----LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG- 140 (206)
T ss_dssp -----TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-
T ss_pred -----ccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-
Confidence 12345789999999999999999999998877 78899999999988777777888999999999999988653
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
...+.++++|||||||++++.++...+..++..++ ..+|+++||||++
T Consensus 141 --~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~ 188 (206)
T 1vec_A 141 --VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------------------KNRQILLYSATFP 188 (206)
T ss_dssp --CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC------------------------TTCEEEEEESCCC
T ss_pred --CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC------------------------ccceEEEEEeeCC
Confidence 35688999999999999999999999999999987 5689999999998
No 29
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2e-33 Score=268.52 Aligned_cols=185 Identities=35% Similarity=0.620 Sum_probs=163.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGE 254 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~ 254 (547)
.+|.++++++.+.+++..+||..|+++|.++++.++ +++++++++|||||||++|++|+++.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHh--------------
Confidence 569999999999999999999999999999999998 68999999999999999999999987631
Q ss_pred hhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC----CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHh
Q 009003 255 EAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI----NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 255 ~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~ 330 (547)
...++++|||+||++|+.|+++.+..++... ++.+..++|+.........+..+++|+|+||++|..++.
T Consensus 69 ------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 142 (219)
T 1q0u_A 69 ------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIR 142 (219)
T ss_dssp ------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHH
T ss_pred ------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHH
Confidence 2245789999999999999999999998876 788888999887655545555688999999999999986
Q ss_pred cCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
.. ...+..+++|||||||+++++++...+..++..++ ..+|+++||||++
T Consensus 143 ~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~ 192 (219)
T 1q0u_A 143 EQ---ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------KDLQMLVFSATIP 192 (219)
T ss_dssp TT---CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC------------------------TTCEEEEEESCCC
T ss_pred cC---CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC------------------------cccEEEEEecCCC
Confidence 53 35678899999999999999999999999999887 5689999999997
No 30
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.6e-33 Score=264.95 Aligned_cols=189 Identities=30% Similarity=0.557 Sum_probs=160.5
Q ss_pred ccccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhh
Q 009003 170 ISTEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKML 249 (547)
Q Consensus 170 ~~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 249 (547)
.+.....|.++++++.+.+.+..+||..|+++|.++++.++ +++++++++|||||||++|++|+++.+.
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~---------- 77 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRID---------- 77 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCC----------
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHh----------
Confidence 34456789999999999999999999999999999999998 6899999999999999999999998762
Q ss_pred hhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHH
Q 009003 250 EDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELM 329 (547)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l 329 (547)
....++++||++||++|+.|+++.+..++...++++..++|+.........+.. ++|+|+||++|...+
T Consensus 78 ----------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 78 ----------TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNI 146 (224)
T ss_dssp ----------TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHH
T ss_pred ----------ccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHH
Confidence 123467899999999999999999999998889999999999877665554444 899999999999988
Q ss_pred hcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 330 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
.+. ...+.++++|||||||+++++++...+..++..++ ..+|+++||||++
T Consensus 147 ~~~---~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~lSAT~~ 197 (224)
T 1qde_A 147 QRR---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMP 197 (224)
T ss_dssp HTT---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEEESSCC
T ss_pred HhC---CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC------------------------ccCeEEEEEeecC
Confidence 653 36688999999999999999999999999999887 6689999999998
No 31
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=9.4e-33 Score=266.00 Aligned_cols=188 Identities=28% Similarity=0.485 Sum_probs=163.1
Q ss_pred cccccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhh
Q 009003 171 STEFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLE 250 (547)
Q Consensus 171 ~~~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 250 (547)
+.+...|.++++++.+.+.|..+||..|+++|.++++.++ +|+++++++|||||||++|++|+++.+..
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~---------- 88 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVL---------- 88 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCT----------
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHh----------
Confidence 3455789999999999999999999999999999999998 69999999999999999999999987632
Q ss_pred hhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHH
Q 009003 251 DKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELM 329 (547)
Q Consensus 251 ~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l 329 (547)
...++++|||+||++|+.|+++.+..++... ++++..++|+.........+ .+++|+|+||++|..++
T Consensus 89 ----------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~ 157 (230)
T 2oxc_A 89 ----------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLI 157 (230)
T ss_dssp ----------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHH
T ss_pred ----------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHH
Confidence 2235789999999999999999999998765 88999999998876665554 47899999999999998
Q ss_pred hcCCCCcccCCCccEEEEeccchhhhcC-ChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 330 SGGEKHLVELHTLSFFVLDEADRMIENG-HFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEah~ll~~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
... .+.+.++++|||||||++++++ |...+..|+..++ ..+|+++||||++
T Consensus 158 ~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 158 ELD---YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------------------ASKQMLAVSATYP 209 (230)
T ss_dssp HTT---SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC------------------------SSCEEEEEESCCC
T ss_pred hcC---CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC------------------------CCCeEEEEEeccC
Confidence 653 3567889999999999999887 9999999999987 5689999999987
No 32
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6e-33 Score=310.79 Aligned_cols=283 Identities=18% Similarity=0.197 Sum_probs=218.4
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
.|.+++|++.+.+.+...||..|+++|.++++.++..++++++++|||||||++|.+|+++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 488899999999999999999999999999998444799999999999999999999999887532
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
+.++||++|+++||.|+++.+..+.. .++++..++|+...... ....++|+||||++|..++...
T Consensus 68 --------~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~--- 132 (720)
T 2zj8_A 68 --------GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG--- 132 (720)
T ss_dssp --------CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT---
T ss_pred --------CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC---
Confidence 36899999999999999999975543 48899999997655332 2246899999999999888653
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
...++++++|||||||++.++++...+..++..++ ...|+|+||||+++..++..|
T Consensus 133 ~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------------------------~~~~ii~lSATl~n~~~~~~~ 188 (720)
T 2zj8_A 133 SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------------------------GKAQIIGLSATIGNPEELAEW 188 (720)
T ss_dssp CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------------------------TTBEEEEEECCCSCHHHHHHH
T ss_pred hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------------------------cCCeEEEEcCCcCCHHHHHHH
Confidence 23478999999999999998889999999998876 357999999999987788888
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEcc-----ccchHHHHHHHHHhcCCCcEE
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECK-----EEDKDAYLYYILSVHGQGRTI 490 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-----~~~k~~~l~~ll~~~~~~k~L 490 (547)
+....+... .++.+........ . ...... ...+...+..++. .++++|
T Consensus 189 l~~~~~~~~-----------------~rp~~l~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L 241 (720)
T 2zj8_A 189 LNAELIVSD-----------------WRPVKLRRGVFYQ----G----FVTWEDGSIDRFSSWEELVYDAIR--KKKGAL 241 (720)
T ss_dssp TTEEEEECC-----------------CCSSEEEEEEEET----T----EEEETTSCEEECSSTTHHHHHHHH--TTCCEE
T ss_pred hCCcccCCC-----------------CCCCcceEEEEeC----C----eeeccccchhhhhHHHHHHHHHHh--CCCCEE
Confidence 753211100 1111111000000 0 000111 2344555665554 468999
Q ss_pred EEeCChHHHHHHHHHHHHc---------------------------------CCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 491 VFCTSIAALRHISSLLKIL---------------------------------GIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 491 VF~~s~~~a~~L~~~L~~~---------------------------------g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
|||+|++.|+.++..|... ...+..+||+|+..+|..+++.|++|..
T Consensus 242 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 321 (720)
T 2zj8_A 242 IFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGII 321 (720)
T ss_dssp EECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred EEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCC
Confidence 9999999999999998753 1249999999999999999999999876
Q ss_pred c
Q 009003 538 K 538 (547)
Q Consensus 538 k 538 (547)
+
T Consensus 322 ~ 322 (720)
T 2zj8_A 322 K 322 (720)
T ss_dssp C
T ss_pred e
Confidence 5
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.2e-33 Score=309.28 Aligned_cols=290 Identities=22% Similarity=0.205 Sum_probs=217.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
...|.+++|++.+.+.+...||..|+++|.++++.++..+++++++||||||||++|.+|+++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------ 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------ 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------
Confidence 35699999999999999999999999999999999555799999999999999999999999886421
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
+.++||++|+++||.|+++.+..+ ...++++..++|+...... .+ ..++|+||||++|..++.++
T Consensus 75 ----------~~~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~- 139 (715)
T 2va8_A 75 ----------GGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHR- 139 (715)
T ss_dssp ----------CSEEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHC-
T ss_pred ----------CCeEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCC-
Confidence 368999999999999999999644 3458889888888665332 12 36899999999999988763
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
...++++++|||||||.+.+.++...+..++..++ ..|+|+||||+++..++.
T Consensus 140 --~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------------~~~ii~lSATl~n~~~~~ 192 (715)
T 2va8_A 140 --PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------------RRNLLALSATISNYKQIA 192 (715)
T ss_dssp --CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------TSEEEEEESCCTTHHHHH
T ss_pred --hhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------cCcEEEEcCCCCCHHHHH
Confidence 24478999999999999987788888888887764 479999999999878888
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEc-------c-ccchHHHHHHHHHhcC
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIEC-------K-EEDKDAYLYYILSVHG 485 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-------~-~~~k~~~l~~ll~~~~ 485 (547)
.|+....+... .++.+......... ........... . .......+..++. .
T Consensus 193 ~~l~~~~~~~~-----------------~r~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 251 (715)
T 2va8_A 193 KWLGAEPVATN-----------------WRPVPLIEGVIYPE--RKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--K 251 (715)
T ss_dssp HHHTCEEEECC-----------------CCSSCEEEEEEEEC--SSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--T
T ss_pred HHhCCCccCCC-----------------CCCCCceEEEEecC--CcccceeeecCcchhhhcccchHHHHHHHHHHh--c
Confidence 88853221110 01111100000000 00000000000 0 1233444444443 5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcC------------------------------------CceEEecCCcCHHHHHHHH
Q 009003 486 QGRTIVFCTSIAALRHISSLLKILG------------------------------------IDVWTLHAQMQQRARLKLF 529 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~~g------------------------------------~~v~~lhg~m~~~eR~~il 529 (547)
++++||||+++++|+.++..|.... ..+.++||+|+..+|..++
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 6899999999999999999998642 3589999999999999999
Q ss_pred HHHHhhhhc
Q 009003 530 SQMITWIRK 538 (547)
Q Consensus 530 ~~F~~~~~k 538 (547)
+.|++|..+
T Consensus 332 ~~f~~g~~~ 340 (715)
T 2va8_A 332 EGFRQRKIK 340 (715)
T ss_dssp HHHHTTCSC
T ss_pred HHHHcCCCe
Confidence 999998765
No 34
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.2e-32 Score=258.67 Aligned_cols=185 Identities=42% Similarity=0.677 Sum_probs=162.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009003 176 AWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEE 255 (547)
Q Consensus 176 ~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~ 255 (547)
+|.++++++.+.+.+...||..|+++|.++++.++ +++++++++|||||||++|++|+++.+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~-------------- 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPS-------------- 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhc--------------
Confidence 58899999999999999999999999999999998 689999999999999999999999886321
Q ss_pred hhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCC
Q 009003 256 AEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKH 335 (547)
Q Consensus 256 ~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~ 335 (547)
.....++++||++||++|+.|+++.+..++.. +++..++|+.........+..+++|+|+||++|..++...
T Consensus 67 ---~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--- 138 (207)
T 2gxq_A 67 ---QERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG--- 138 (207)
T ss_dssp ---CCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT---
T ss_pred ---cccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC---
Confidence 11234678999999999999999999998664 6778888998877776777778999999999999988653
Q ss_pred cccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 336 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 336 ~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
.+.+.++++|||||||+++++++...+..++..++ ..+|+++||||++
T Consensus 139 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 139 VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------------------------PSRQTLLFSATLP 186 (207)
T ss_dssp SSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC------------------------TTSEEEEECSSCC
T ss_pred CcchhhceEEEEEChhHhhccchHHHHHHHHHhCC------------------------ccCeEEEEEEecC
Confidence 36688999999999999999999999999998887 5689999999998
No 35
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=267.05 Aligned_cols=194 Identities=33% Similarity=0.541 Sum_probs=160.1
Q ss_pred ccccccccccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHH
Q 009003 170 ISTEFDAWNEL----RLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKA 245 (547)
Q Consensus 170 ~~~~~~~f~~l----~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~ 245 (547)
.|.+..+|.++ ++++.+++++..+||..|+++|.++|+.++ +|+++++++|||||||++|++|+++.+..
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~----- 93 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQ----- 93 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCS-----
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhh-----
Confidence 45566777766 899999999999999999999999999998 69999999999999999999999988721
Q ss_pred HhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHH-HHHhcCCCcEEEeChHH
Q 009003 246 AKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQ-ERLLKARPEVVVGTPGR 324 (547)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~-~~~~~~~~dIlv~TP~~ 324 (547)
....++++|||+||++||.|+++.+..++...++.+..++|+...... ......+++|+|+||++
T Consensus 94 --------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~ 159 (245)
T 3dkp_A 94 --------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 159 (245)
T ss_dssp --------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHH
T ss_pred --------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHH
Confidence 233567899999999999999999999999889888877765432221 12234578999999999
Q ss_pred HHHHHhcCCCCcccCCCccEEEEeccchhhh---cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEE
Q 009003 325 LWELMSGGEKHLVELHTLSFFVLDEADRMIE---NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLV 401 (547)
Q Consensus 325 l~~~l~~~~~~~~~l~~l~~lViDEah~ll~---~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 401 (547)
|..++... ...+.+.++++|||||||++++ .++...+..++..+.. ...|+++
T Consensus 160 l~~~l~~~-~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~~ 215 (245)
T 3dkp_A 160 LIYLLKQD-PPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-----------------------HKVRRAM 215 (245)
T ss_dssp HHHHHHSS-SCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-----------------------TTCEEEE
T ss_pred HHHHHHhC-CCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-----------------------CCcEEEE
Confidence 99998753 2246789999999999999998 4678888888877642 4579999
Q ss_pred EeccCC
Q 009003 402 FSATIA 407 (547)
Q Consensus 402 ~SATl~ 407 (547)
||||++
T Consensus 216 ~SAT~~ 221 (245)
T 3dkp_A 216 FSATFA 221 (245)
T ss_dssp EESSCC
T ss_pred EeccCC
Confidence 999997
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.7e-32 Score=306.26 Aligned_cols=286 Identities=16% Similarity=0.155 Sum_probs=211.5
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 176 AWNELR--LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 176 ~f~~l~--l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
+|.+++ |++.+.+.+...||..|+++|.++++.++ .+++++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 467777 99999999999999999999999999976 79999999999999999999999987632
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
+.++||++|+++||.|+++.++.+ ...++++..++|+...... ....++|+||||++|..++.+.
T Consensus 68 ----------~~~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~- 132 (702)
T 2p6r_A 68 ----------GGKSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR- 132 (702)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-
T ss_pred ----------CCcEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-
Confidence 358999999999999999999644 3458899999988654321 2247899999999999988753
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
...++++++|||||||.+.++++...+..++..+... ....|+|+||||+++..++.
T Consensus 133 --~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---------------------~~~~~ii~lSATl~n~~~~~ 189 (702)
T 2p6r_A 133 --ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---------------------NKALRVIGLSATAPNVTEIA 189 (702)
T ss_dssp --CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH---------------------CTTCEEEEEECCCTTHHHHH
T ss_pred --hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc---------------------CcCceEEEECCCcCCHHHHH
Confidence 2347899999999999999888888888887766310 14689999999999877888
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEc-----cccchHHHHHHHHHhcCCCc
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIEC-----KEEDKDAYLYYILSVHGQGR 488 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-----~~~~k~~~l~~ll~~~~~~k 488 (547)
.|+....+... .++.+........ . ...+... ........+...+. .+++
T Consensus 190 ~~l~~~~~~~~-----------------~r~~~l~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 244 (702)
T 2p6r_A 190 EWLDADYYVSD-----------------WRPVPLVEGVLCE----G--TLELFDGAFSTSRRVKFEELVEECVA--ENGG 244 (702)
T ss_dssp HHTTCEEEECC-----------------CCSSCEEEEEECS----S--EEEEEETTEEEEEECCHHHHHHHHHH--TTCC
T ss_pred HHhCCCcccCC-----------------CCCccceEEEeeC----C--eeeccCcchhhhhhhhHHHHHHHHHh--cCCC
Confidence 87753211110 1111111000000 0 0001110 00114455555554 5789
Q ss_pred EEEEeCChHHHHHHHHHHHHc------------------------------CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 489 TIVFCTSIAALRHISSLLKIL------------------------------GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~------------------------------g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+||||+++++|+.++..|... +..+.++||+|++.+|..+++.|++|..+
T Consensus 245 ~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~ 324 (702)
T 2p6r_A 245 VLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK 324 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe
Confidence 999999999999999988753 24688999999999999999999998765
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.1e-32 Score=297.36 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=131.1
Q ss_pred CCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 194 QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
+.-.|+|+|.++|+.++ .++++|+++|||||||++|++|+++.+... ....++++|||+||
T Consensus 4 ~~~~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLATK 64 (556)
T ss_dssp ----CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSS
T ss_pred CCCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhC------------------cccCCCeEEEEeCC
Confidence 34589999999999998 689999999999999999999999887431 11226789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
++|+.|+++.+..++...++++..++|+.........+..+++|+|+||++|..++..+. ...+..+++|||||||++
T Consensus 65 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~ 142 (556)
T 4a2p_A 65 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNT 142 (556)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGC
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCccc
Confidence 999999999999999988999999999987666555565679999999999999996532 226889999999999999
Q ss_pred hhcCChHHHH-HHH-HhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 354 IENGHFRELQ-SII-DMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 354 l~~~~~~~l~-~i~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
..++.+..+. .++ ..+.. .....|+|+||||+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 143 TGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVGV 178 (556)
T ss_dssp STTSHHHHHHHHHHHHHHCC------------------------CCEEEEEESCCCC
T ss_pred CCcchHHHHHHHHHHhhhcc---------------------cCCCCeEEEEeCCccc
Confidence 8776544442 222 22210 0145799999999953
No 38
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.7e-32 Score=256.93 Aligned_cols=188 Identities=37% Similarity=0.642 Sum_probs=162.1
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
....|.+++|++.+.++|..+||..|+++|.++++.++ +++++++++|||+|||++|++|+++.+.
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~------------- 77 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLE------------- 77 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCC-------------
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhh-------------
Confidence 34679999999999999999999999999999999998 6899999999999999999999998752
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC-CcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHh
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI-NVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~ 330 (547)
....++++|||+||++|+.|+++.+..+.... ++++..++|+.........+. ..++|+|+||++|..++.
T Consensus 78 -------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 150 (220)
T 1t6n_A 78 -------PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR 150 (220)
T ss_dssp -------CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHH
T ss_pred -------ccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHH
Confidence 12335689999999999999999999998776 789999999988766655554 457999999999999886
Q ss_pred cCCCCcccCCCccEEEEeccchhhh-cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 331 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
.. .+.+.++++|||||||++++ .++...+..++..++ ..+|+++||||++.
T Consensus 151 ~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 151 NK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSK 202 (220)
T ss_dssp TT---SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESCCCT
T ss_pred hC---CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC------------------------CcCeEEEEEeecCH
Confidence 53 35688999999999999986 477888888888776 56899999999983
No 39
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.6e-32 Score=310.11 Aligned_cols=270 Identities=17% Similarity=0.165 Sum_probs=203.6
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
.+|| .|+++|.++||.++ .|+|+|++||||||||++|++|++..+ ..++++|||+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~-----------------------~~~~~~Lil~ 128 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RKGKKSALVF 128 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHH-----------------------TTTCCEEEEE
T ss_pred hcCC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHH-----------------------hcCCeEEEEe
Confidence 3688 69999999999998 699999999999999998888887765 2357899999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCH---HHHHHHhcCC-CcEEEeChHHHHHHHhcCCCCcccCCCccEEEE
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMST---EKQERLLKAR-PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVL 347 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lVi 347 (547)
||++||.|+++.+..++ ..++++..++|+... ..+...+..+ ++|+|+||++|++++.. +.+.++++|||
T Consensus 129 PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lVi 202 (1104)
T 4ddu_A 129 PTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFV 202 (1104)
T ss_dssp SSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEE
T ss_pred chHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEE
Confidence 99999999999999987 778999999999987 5555566655 99999999999888752 66789999999
Q ss_pred eccchh----------hh-cCChHH-HHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHH
Q 009003 348 DEADRM----------IE-NGHFRE-LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKK 415 (547)
Q Consensus 348 DEah~l----------l~-~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 415 (547)
||||++ ++ +||... +..++..++... ....+. ....+|+++||||+....- ..
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~-----------~~~~~~--~~~~~q~ll~SAT~~p~~~-~~- 267 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK-----------IYERPK--NLKPGILVVSSATAKPRGI-RP- 267 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTS-----------CCCCCS--SCCCCEEEEECBSSCCCSS-TT-
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccch-----------hhhhhc--cCCCceEEEEcCCCCcHHH-HH-
Confidence 999654 45 888888 888888765100 000000 0145799999999532110 00
Q ss_pred hhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCC
Q 009003 416 LKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTS 495 (547)
Q Consensus 416 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s 495 (547)
.+.... +. +..........++.+.++.+ .+...|..++... ++++||||++
T Consensus 268 -------------------~~~~~~-l~-----i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s 318 (1104)
T 4ddu_A 268 -------------------LLFRDL-LN-----FTVGRLVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQT 318 (1104)
T ss_dssp -------------------HHHHHH-TC-----CCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESS
T ss_pred -------------------HHhhcc-ee-----EEeccCCCCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECc
Confidence 011110 00 11122223345577777766 4677778888774 4899999999
Q ss_pred hHHHHHHHHHHHHcCCceE-EecCCcCHHHHHHHHHHHHhhhhcCCCC
Q 009003 496 IAALRHISSLLKILGIDVW-TLHAQMQQRARLKLFSQMITWIRKRPKG 542 (547)
Q Consensus 496 ~~~a~~L~~~L~~~g~~v~-~lhg~m~~~eR~~il~~F~~~~~k~~~g 542 (547)
+..|+.|+..|+..|+.+. .+||. |.+ ++.|++|..+...+
T Consensus 319 ~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 319 EEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp SHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred HHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 9999999999999999998 99993 555 99999998765554
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.7e-32 Score=297.82 Aligned_cols=307 Identities=17% Similarity=0.166 Sum_probs=207.8
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
.+|| .||++|..++|.++ .|+ |++++||+|||++|++|++...+ .+..|+||+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL-----------------------~g~~vlVlt 131 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNAL-----------------------TGKGVHVVT 131 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCEEEEE
T ss_pred HcCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHH-----------------------cCCCEEEEe
Confidence 4899 99999999999987 687 99999999999999999985431 245799999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC---CCcccCCCccEEEE
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 347 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~---~~~~~l~~l~~lVi 347 (547)
||++||.|+++++..++..+|+++.+++||.+...+.. ..++||+|+||++| +++|...- ...+.++.+.++||
T Consensus 132 ptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 132 VNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 99999999999999999999999999999998754433 34689999999999 66654321 22356899999999
Q ss_pred eccchhh-hcC---------------ChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEE-----------
Q 009003 348 DEADRMI-ENG---------------HFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTL----------- 400 (547)
Q Consensus 348 DEah~ll-~~~---------------~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i----------- 400 (547)
||||+|| +.+ ++..+..|+..++... ++. .-.+.+|++
T Consensus 210 DEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~------~y~---------vd~k~rq~~lt~~g~~~~e~ 274 (844)
T 1tf5_A 210 DEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEK------DYT---------YDIKTKAVQLTEEGMTKAEK 274 (844)
T ss_dssp ETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSS------SBC---------CCSSSCCCCBCHHHHHHHHH
T ss_pred CchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccc------cce---------eccccceEEecHHHHHHHHH
Confidence 9999998 664 5688888988886210 000 001456776
Q ss_pred ------EEeccCCCChhHHH-Hhhh-cccc---cccc------------------cCCcchHHH----------------
Q 009003 401 ------VFSATIALSADFRK-KLKH-GSLK---SKQS------------------VNGLNSIET---------------- 435 (547)
Q Consensus 401 ------~~SATl~~~~~~~~-~l~~-~~~~---~~~~------------------~~~~~~i~~---------------- 435 (547)
+||||.+....... .+.. ..+. .+.. ......+..
T Consensus 275 ~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t 354 (844)
T 1tf5_A 275 AFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMT 354 (844)
T ss_dssp HTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEE
T ss_pred HhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccc
Confidence 89999752111111 1110 0000 0000 000000111
Q ss_pred -----------------------------HHHHhcccCceeEEeccccccccccc-eEEEEEccccchHHHHHHHHHh-c
Q 009003 436 -----------------------------LSERAGMRANVAIVDLTNMCVLANKL-EESFIECKEEDKDAYLYYILSV-H 484 (547)
Q Consensus 436 -----------------------------l~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~ll~~-~ 484 (547)
+...+++ .++.++.. .....+ ...++.+....|...|...+.. +
T Consensus 355 ~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l----~vv~IPtn-~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~ 429 (844)
T 1tf5_A 355 LATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM----QVVTIPTN-RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY 429 (844)
T ss_dssp EEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC----CEEECCCS-SCCCCEECCCEEESSHHHHHHHHHHHHHHHH
T ss_pred cceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC----ceEEecCC-CCcccccCCcEEEeCHHHHHHHHHHHHHHHH
Confidence 1111111 01111111 111111 1224556667888888887764 2
Q ss_pred -CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh--cCCCCCCCCC
Q 009003 485 -GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR--KRPKGDRGKD 547 (547)
Q Consensus 485 -~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~--k~~~g~~~~~ 547 (547)
.+.++||||+|++.++.|+..|...|+++.++||++.+.+|..+..+|+.|.. ---..+||.|
T Consensus 430 ~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATdmAgRG~D 495 (844)
T 1tf5_A 430 MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTD 495 (844)
T ss_dssp HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTTCC
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCCccccCcC
Confidence 46789999999999999999999999999999999999999877777765521 1223456654
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.98 E-value=8.2e-32 Score=300.95 Aligned_cols=180 Identities=17% Similarity=0.179 Sum_probs=136.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeE
Q 009003 187 MKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLR 266 (547)
Q Consensus 187 ~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (547)
..++..+||..|+++|.++++.++ .|+++|+++|||+|||++|++|+++++... ....+++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~ 63 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKF------------------PQGQKGK 63 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHS------------------CTTCCCC
T ss_pred CCcccccCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhC------------------ccCCCCe
Confidence 345677899999999999999998 699999999999999999999999887432 1122368
Q ss_pred EEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEE
Q 009003 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFV 346 (547)
Q Consensus 267 ~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lV 346 (547)
+|||+||++|+.|+++++..++...++++..++|+.....+...+..+++|+|+||++|...+..+. ...+..+++||
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vV 141 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMI 141 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEE
Confidence 9999999999999999999999888999999999986654444455579999999999999987542 12578899999
Q ss_pred EeccchhhhcCChHHHH-HHHHh-CCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 347 LDEADRMIENGHFRELQ-SIIDM-LPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 347 iDEah~ll~~~~~~~l~-~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
|||||++.....+..+. .++.. +. .......|+|+||||+.
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~--------------------~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLG--------------------GSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHT--------------------TCCSCCCEEEEEESCCC
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhc--------------------ccCCCCCeEEEEeCccc
Confidence 99999997443222222 12211 11 01114579999999987
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=2.1e-31 Score=289.18 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=135.9
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+++|.++++.++ .|+++|+++|||||||++|++|+++.+... ....++++|||+||++|
T Consensus 4 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~~~L 64 (555)
T 3tbk_A 4 KPRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKF------------------PCGQKGKVVFFANQIPV 64 (555)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSSHHH
T ss_pred CCcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------ccCCCCEEEEEeCCHHH
Confidence 79999999999998 689999999999999999999999887432 11236789999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~ 356 (547)
+.|+++.+..++...++++..++|+.........+..+++|+|+||++|..++.... ...+..+++|||||||++...
T Consensus 65 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 65 YEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTT
T ss_pred HHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCc
Confidence 999999999999988999999999987665555555678999999999999986542 226788999999999999866
Q ss_pred CChHHHH-HHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 357 GHFRELQ-SIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 357 ~~~~~l~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
+.+..+. .++..... .......|+|+||||+...
T Consensus 143 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~lSAT~~~~ 177 (555)
T 3tbk_A 143 HPYNQIMFRYLDHKLG-------------------ESRDPLPQVVGLTASVGVG 177 (555)
T ss_dssp CHHHHHHHHHHHHHTS-------------------SCCSCCCEEEEEESCCCCT
T ss_pred chHHHHHHHHHHhhhc-------------------cccCCCCeEEEEecCcccC
Confidence 5333322 22222110 0111457999999999643
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=2.8e-31 Score=316.53 Aligned_cols=288 Identities=22% Similarity=0.218 Sum_probs=210.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCC
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAP 261 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (547)
|.+...++++..+|..++|+|.++++.+++.+++++++||||||||++|.+|+++.+.+.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------------------- 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------------------- 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------------------
Confidence 456778888888999999999999999998788999999999999999999999988542
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHH-hhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 262 KGHLRALIITPTRELALQVTDHLKG-VAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.+.++|||+||++||.|+++.|.. ++..++++|..++|+...... ...+++|+||||++|..++.+ +.....++
T Consensus 971 -~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~-~~~~~~l~ 1045 (1724)
T 4f92_B 971 -SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRR-WKQRKNVQ 1045 (1724)
T ss_dssp -TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTT-TTTCHHHH
T ss_pred -CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhC-cccccccc
Confidence 245899999999999999999975 556789999999988654322 234579999999998777754 33334578
Q ss_pred CccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcc
Q 009003 341 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 420 (547)
Q Consensus 341 ~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 420 (547)
+|++|||||+|.|.+ .....+..++..+. ++......++|+|+||||+++..++..||....
T Consensus 1046 ~v~lvViDE~H~l~d-~rg~~le~il~rl~-----------------~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~ 1107 (1724)
T 4f92_B 1046 NINLFVVDEVHLIGG-ENGPVLEVICSRMR-----------------YISSQIERPIRIVALSSSLSNAKDVAHWLGCSA 1107 (1724)
T ss_dssp SCSEEEECCGGGGGS-TTHHHHHHHHHHHH-----------------HHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCS
T ss_pred eeeEEEeechhhcCC-CCCccHHHHHHHHH-----------------HHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCC
Confidence 999999999998875 46666666655442 222222367899999999999999999996432
Q ss_pred cccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccc-------hHHHHHHHHH-hcCCCcEEEE
Q 009003 421 LKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED-------KDAYLYYILS-VHGQGRTIVF 492 (547)
Q Consensus 421 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-------k~~~l~~ll~-~~~~~k~LVF 492 (547)
........ ..++. .++.++....... ....++..+. ..+.+++|||
T Consensus 1108 ~~~~~~~~------------~~RPv--------------pL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF 1161 (1724)
T 4f92_B 1108 TSTFNFHP------------NVRPV--------------PLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVF 1161 (1724)
T ss_dssp TTEEECCG------------GGCSS--------------CEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEE
T ss_pred CCeEEeCC------------CCCCC--------------CeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeee
Confidence 11000000 01111 1222222222111 1122333443 3457899999
Q ss_pred eCChHHHHHHHHHHHH----------------------------------cCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 493 CTSIAALRHISSLLKI----------------------------------LGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 493 ~~s~~~a~~L~~~L~~----------------------------------~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|+|+..|+.++..|.. ....|.++||+|++.+|..+.+.|++|..+
T Consensus 1162 ~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~ 1241 (1724)
T 4f92_B 1162 VPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1241 (1724)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe
Confidence 9999999988876632 124589999999999999999999999865
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=5.5e-31 Score=297.85 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=132.2
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
.+|+..|+++|.++|+.++ .|+++|+++|||||||++|++|+++.+... ....++++|||+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~~Lvl~ 303 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLA 303 (797)
T ss_dssp -----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEEC
T ss_pred hcCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------cccCCCeEEEEe
Confidence 3578899999999999998 689999999999999999999999887431 112367899999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccc
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 351 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah 351 (547)
||++|+.|+++.+..++...++++..++|+.........+..+++|+|+||++|..++.... ...+..+++|||||||
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH 381 (797)
T 4a2q_A 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECH 381 (797)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGG
T ss_pred CCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECcc
Confidence 99999999999999999888999999999987766556666789999999999999986532 2267889999999999
Q ss_pred hhhhcCChHHHH-HHHHh-CCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 352 RMIENGHFRELQ-SIIDM-LPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 352 ~ll~~~~~~~l~-~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
++...+.+..+. .++.. +.. .....|+|+||||+..
T Consensus 382 ~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 382 NTTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVGV 419 (797)
T ss_dssp GCSTTSHHHHHHHHHHHHHHTT---------------------CCCCCEEEEEESCCCC
T ss_pred ccCCCccHHHHHHHHHHHhhcc---------------------CCCCCeEEEEcCCccc
Confidence 998654433332 22221 110 1145799999999863
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=1.1e-31 Score=309.64 Aligned_cols=266 Identities=17% Similarity=0.184 Sum_probs=202.3
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
.+||. | ++|.++||.++ .|+|+|++||||||||+ |++|++..+.. .++++|||+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------------------~~~~~lil~ 106 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL----------------------KGKRCYVIF 106 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT----------------------TSCCEEEEE
T ss_pred hcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------------------cCCeEEEEe
Confidence 48998 9 99999999998 79999999999999998 99999887632 257899999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCc----EEEEEEcCCCHHHH---HHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccE
Q 009003 272 PTRELALQVTDHLKGVAKGINV----RVVPIVGGMSTEKQ---ERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~----~v~~~~g~~~~~~~---~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~ 344 (547)
||++||.|+++.+..++...++ ++..++|+.....+ ...+.. ++|+||||++|++++.+ |+++++
T Consensus 107 PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~ 178 (1054)
T 1gku_B 107 PTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDF 178 (1054)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSE
T ss_pred ccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCE
Confidence 9999999999999999998888 89999999987663 344455 99999999999987742 679999
Q ss_pred EEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccc
Q 009003 345 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSK 424 (547)
Q Consensus 345 lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~ 424 (547)
|||||||+|++ +...+..++..+...... ........+|+++||||++....+...+.
T Consensus 179 lViDEah~~l~--~~~~~~~i~~~lgf~~~~-------------~~~~~~~~~q~~l~SAT~t~~~~~~~~~~------- 236 (1054)
T 1gku_B 179 IFVDDVDAILK--ASKNVDKLLHLLGFHYDL-------------KTKSWVGEARGCLMVSTATAKKGKKAELF------- 236 (1054)
T ss_dssp EEESCHHHHHT--STHHHHHHHHHTTEEEET-------------TTTEEEECCSSEEEECCCCSCCCTTHHHH-------
T ss_pred EEEeChhhhhh--ccccHHHHHHHhCcchhh-------------hhhhcccCCceEEEEecCCCchhHHHHHh-------
Confidence 99999999987 578888888877521000 00111245789999999985432222221
Q ss_pred cccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHH
Q 009003 425 QSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISS 504 (547)
Q Consensus 425 ~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~ 504 (547)
.... .+...........+.+.++ ...+...|..++... ++++||||+|+..|+.|+.
T Consensus 237 -------------~~~~------~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~ 293 (1054)
T 1gku_B 237 -------------RQLL------NFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYE 293 (1054)
T ss_dssp -------------HHHH------CCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHH
T ss_pred -------------hcce------EEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHH
Confidence 1100 0111122223334666655 356667788888765 5789999999999999999
Q ss_pred HHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcCCCC
Q 009003 505 LLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKRPKG 542 (547)
Q Consensus 505 ~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~~~g 542 (547)
.|+.. +.+..+||+|. ++++.|++|..+...+
T Consensus 294 ~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVa 325 (1054)
T 1gku_B 294 SLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIG 325 (1054)
T ss_dssp TTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEE
T ss_pred HHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEE
Confidence 99998 99999999983 7889999987664433
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=5.5e-31 Score=301.40 Aligned_cols=286 Identities=16% Similarity=0.141 Sum_probs=204.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
++| .|+++|.++|+.++ +|+++++++|||||||++|++|++..+. .+.++||++|
T Consensus 36 ~~f-~l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------------------~g~~vlvl~P 90 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------------------NMTKTIYTSP 90 (997)
T ss_dssp CSS-CCCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHH-----------------------TTCEEEEEES
T ss_pred CCC-CCCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHh-----------------------cCCeEEEEeC
Confidence 456 58999999999998 7999999999999999999999887642 2468999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ 352 (547)
|++|+.|+++.+..+.. ++++..++|+... ...++|+|+||++|..++... ...+.++++|||||||+
T Consensus 91 traLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~---~~~l~~l~lvViDEaH~ 158 (997)
T 4a4z_A 91 IKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG---ADLIRDVEFVIFDEVHY 158 (997)
T ss_dssp CGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT---CSGGGGEEEEEECCTTC
T ss_pred CHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC---chhhcCCCEEEEECccc
Confidence 99999999999998643 6788888888653 345899999999999888653 24578999999999999
Q ss_pred hhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccC--C-
Q 009003 353 MIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVN--G- 429 (547)
Q Consensus 353 ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~--~- 429 (547)
+.++++...+..++..++ ...|+|+||||+++..++..|+..........+. .
T Consensus 159 l~d~~~g~~~e~ii~~l~------------------------~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r 214 (997)
T 4a4z_A 159 VNDQDRGVVWEEVIIMLP------------------------QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKR 214 (997)
T ss_dssp CCTTCTTCCHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSC
T ss_pred ccccchHHHHHHHHHhcc------------------------cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCC
Confidence 999999988999999987 6789999999999988999998642211000000 0
Q ss_pred cchH-------------------------HHHHHHhcccCceeE---E-----ec-------------------------
Q 009003 430 LNSI-------------------------ETLSERAGMRANVAI---V-----DL------------------------- 451 (547)
Q Consensus 430 ~~~i-------------------------~~l~~~~~~~~~~~~---i-----~~------------------------- 451 (547)
...+ ........-...... . ..
T Consensus 215 ~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~ 294 (997)
T 4a4z_A 215 PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGG 294 (997)
T ss_dssp SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------------------------
T ss_pred CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 000000000000000 0 00
Q ss_pred -------cccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-------------
Q 009003 452 -------TNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGI------------- 511 (547)
Q Consensus 452 -------~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~------------- 511 (547)
............++..+....+...+...+.....+++||||+|+..|+.++..|...++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~ 374 (997)
T 4a4z_A 295 ANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFI 374 (997)
T ss_dssp ----------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 000000001112223334455667788888888888999999999999999999977665
Q ss_pred --------------------------ceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 512 --------------------------DVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 512 --------------------------~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
.+..+||+|++.+|..+++.|++|..+.
T Consensus 375 ~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kV 428 (997)
T 4a4z_A 375 EKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKV 428 (997)
T ss_dssp HHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcE
Confidence 5799999999999999999999987653
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-30 Score=296.56 Aligned_cols=284 Identities=17% Similarity=0.165 Sum_probs=196.8
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
.++| .|+++|.++|+.++ .++++++++|||||||++|.+|++..+. .+.++||++
T Consensus 82 ~~~f-~L~~~Q~eai~~l~-~g~~vLV~apTGSGKTlva~lai~~~l~-----------------------~g~rvL~l~ 136 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLK-----------------------NKQRVIYTS 136 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHH-HTCEEEEECCTTSCHHHHHHHHHHHHHH-----------------------TTCEEEEEE
T ss_pred hCCC-CCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHhc-----------------------cCCeEEEEC
Confidence 4567 49999999999987 6999999999999999999999988762 146899999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccc
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 351 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah 351 (547)
||++|+.|+++.|..+.. .+..++|+.... ..++|+|+||++|..++.++ ...+.++++|||||||
T Consensus 137 PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~---~~~l~~l~lVViDEaH 202 (1010)
T 2xgj_A 137 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVH 202 (1010)
T ss_dssp SSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT---CTTGGGEEEEEEETGG
T ss_pred ChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC---cchhhcCCEEEEechh
Confidence 999999999999998865 567788876542 35899999999999888653 3567899999999999
Q ss_pred hhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCC--
Q 009003 352 RMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNG-- 429 (547)
Q Consensus 352 ~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~-- 429 (547)
+|.++++...+..++..++ ..+|+|+||||+++..++..|+..........+..
T Consensus 203 ~l~d~~rg~~~e~il~~l~------------------------~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~ 258 (1010)
T 2xgj_A 203 YMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 258 (1010)
T ss_dssp GGGCTTTHHHHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC
T ss_pred hhcccchhHHHHHHHHhcC------------------------CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 9999989889999998887 67899999999998888888875321100000000
Q ss_pred -cchHHHHHHHhcccCceeEEeccccc------cccccceEEE--------EEc------c-------ccchHHHHHHHH
Q 009003 430 -LNSIETLSERAGMRANVAIVDLTNMC------VLANKLEESF--------IEC------K-------EEDKDAYLYYIL 481 (547)
Q Consensus 430 -~~~i~~l~~~~~~~~~~~~i~~~~~~------~~~~~i~~~~--------~~~------~-------~~~k~~~l~~ll 481 (547)
...+..............+++..... .....+.... ... . .......+...+
T Consensus 259 rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l 338 (1010)
T 2xgj_A 259 RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMI 338 (1010)
T ss_dssp CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHH
T ss_pred CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHH
Confidence 00000000000000000000000000 0000000000 000 0 012233355555
Q ss_pred HhcCCCcEEEEeCChHHHHHHHHHHHHcCCc---------------------------------------eEEecCCcCH
Q 009003 482 SVHGQGRTIVFCTSIAALRHISSLLKILGID---------------------------------------VWTLHAQMQQ 522 (547)
Q Consensus 482 ~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~---------------------------------------v~~lhg~m~~ 522 (547)
.....+++||||+|+..|+.++..|...++. +.++||+|++
T Consensus 339 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~ 418 (1010)
T 2xgj_A 339 WKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLP 418 (1010)
T ss_dssp HHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCH
T ss_pred HhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCH
Confidence 5556679999999999999999999775442 7899999999
Q ss_pred HHHHHHHHHHHhhhhc
Q 009003 523 RARLKLFSQMITWIRK 538 (547)
Q Consensus 523 ~eR~~il~~F~~~~~k 538 (547)
.+|..+++.|++|..+
T Consensus 419 ~eR~~ve~~F~~G~ik 434 (1010)
T 2xgj_A 419 ILKEVIEILFQEGFLK 434 (1010)
T ss_dssp HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhcCCCc
Confidence 9999999999998765
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=1.9e-30 Score=282.47 Aligned_cols=313 Identities=16% Similarity=0.140 Sum_probs=186.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. +|+++|..++|.++ .|+ |+.++||||||++|++|++.... .+++|+||+|
T Consensus 71 lg~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------------------~g~~vlVltP 123 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNAL-----------------------TGKGVHVVTV 123 (853)
T ss_dssp HSC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCCEEEES
T ss_pred cCC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHH-----------------------cCCcEEEEcC
Confidence 565 89999999999987 677 99999999999999999986531 2457999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC---CCcccCCCccEEEEe
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 348 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~---~~~~~l~~l~~lViD 348 (547)
|++||.|+++.+..++..+++++.+++||.+.... ....+++|+|+||++| +++|.... .....++.+.++|||
T Consensus 124 TreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlD 201 (853)
T 2fsf_A 124 NDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVD 201 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEES
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEEC
Confidence 99999999999999999999999999999987533 3334699999999999 77776431 123568999999999
Q ss_pred ccchhh-hcC---------------ChHHHHHHHHhCCCCCCC----CCC-CCcccccccccccccCCCcEEE-------
Q 009003 349 EADRMI-ENG---------------HFRELQSIIDMLPMTNGS----NKG-QSEQTQNCVTVSSLQRKKRQTL------- 400 (547)
Q Consensus 349 Eah~ll-~~~---------------~~~~l~~i~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~q~i------- 400 (547)
|||+|| +.+ ++..+..|+..++..... ..+ .++. + -.+.+|++
T Consensus 202 EaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~------v---dek~rqv~lte~g~~ 272 (853)
T 2fsf_A 202 EVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFS------V---DEKSRQVNLTERGLV 272 (853)
T ss_dssp CHHHHTTTTTTCEEEEEEC-------------------------------------------------------------
T ss_pred chHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccce------e---ccccceEEEcHHHHH
Confidence 999998 543 577888888888631000 000 0000 0 00122332
Q ss_pred -----------------EEeccCCCChhHH-HHhhhcc-cc-c--cc---------------------------------
Q 009003 401 -----------------VFSATIALSADFR-KKLKHGS-LK-S--KQ--------------------------------- 425 (547)
Q Consensus 401 -----------------~~SATl~~~~~~~-~~l~~~~-~~-~--~~--------------------------------- 425 (547)
+||||.+...... ..+.... +. . +.
T Consensus 273 ~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieak 352 (853)
T 2fsf_A 273 LIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 352 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhc
Confidence 8899975211111 0000000 00 0 00
Q ss_pred ---ccC----Ccc-----------------------hHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHH
Q 009003 426 ---SVN----GLN-----------------------SIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDA 475 (547)
Q Consensus 426 ---~~~----~~~-----------------------~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 475 (547)
.+. ... ....+...++ ..++.++........-...++.+....|..
T Consensus 353 e~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~----l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~ 428 (853)
T 2fsf_A 353 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYK----LDTVVVPTNRPMIRKDLPDLVYMTEAEKIQ 428 (853)
T ss_dssp ----CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHC----CEEEECCCSSCCCCEECCCEEESSHHHHHH
T ss_pred ccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhC----CcEEEcCCCCCceeecCCcEEEeCHHHHHH
Confidence 000 000 0001111111 112222221111111112345666778999
Q ss_pred HHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh--cCCCCCCCCC
Q 009003 476 YLYYILSV-H-GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR--KRPKGDRGKD 547 (547)
Q Consensus 476 ~l~~ll~~-~-~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~--k~~~g~~~~~ 547 (547)
+|...+.. + .+.++||||+|+..++.|+..|...|+++.++||++.+.+|..+..+|+.|.. ---..+||.|
T Consensus 429 al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~VtIATnmAgRGtD 504 (853)
T 2fsf_A 429 AIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAGRGTD 504 (853)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTCEEEEESCCSSCSC
T ss_pred HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCeEEEecccccCCcC
Confidence 99888854 3 46789999999999999999999999999999999999999889899988732 2223456654
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=1.5e-30 Score=310.20 Aligned_cols=286 Identities=17% Similarity=0.199 Sum_probs=202.9
Q ss_pred CCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 194 QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
||+.++++|.+++|.+++.++|+|+|||||||||++|.+|+++.+.+... ........+.++|||+|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~------------~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHIN------------MDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCC------------TTSSCCTTSCEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcc------------ccccccCCCCEEEEECCH
Confidence 79999999999999999889999999999999999999999998854310 001122346799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
++||.|+++.|.+.....|++|..++|+...... ....++|+||||+++..++.+. .....++.+++|||||+|.+
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhc
Confidence 9999999999999989999999999999765432 1246899999999986655432 22234789999999999977
Q ss_pred hhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchH
Q 009003 354 IENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSI 433 (547)
Q Consensus 354 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i 433 (547)
.+ ..+..++.++.++. ..........|+|+||||+++..++..||.......
T Consensus 220 ~d-~RG~~lE~~l~rl~-----------------~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~---------- 271 (1724)
T 4f92_B 220 HD-DRGPVLEALVARAI-----------------RNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKG---------- 271 (1724)
T ss_dssp GS-TTHHHHHHHHHHHH-----------------HHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHH----------
T ss_pred CC-ccHHHHHHHHHHHH-----------------HHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCC----------
Confidence 64 56666666654431 000111256899999999999999999985321000
Q ss_pred HHHHHHhcccCceeEEeccccccccccceEEEEEccccc---hH----HHHHHHHHhc-CCCcEEEEeCChHHHHHHHHH
Q 009003 434 ETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEED---KD----AYLYYILSVH-GQGRTIVFCTSIAALRHISSL 505 (547)
Q Consensus 434 ~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k~----~~l~~ll~~~-~~~k~LVF~~s~~~a~~L~~~ 505 (547)
...++ . ...+-.+.+.++.+.... +. ..++..+..+ ..+++||||+|++.|+.++..
T Consensus 272 ------------~~~~~--~-~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~ 336 (1724)
T 4f92_B 272 ------------LFYFD--N-SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARA 336 (1724)
T ss_dssp ------------EEECC--G-GGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHH
T ss_pred ------------eEEEC--C-CCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHH
Confidence 00000 0 000111334333333221 11 2233333333 467899999999999888887
Q ss_pred HHHc-------------------------------------CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 506 LKIL-------------------------------------GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 506 L~~~-------------------------------------g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|... ...++++||+|++.+|..+.+.|++|..+
T Consensus 337 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~ 406 (1724)
T 4f92_B 337 IRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQ 406 (1724)
T ss_dssp HHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCC
T ss_pred HHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCe
Confidence 7531 23588999999999999999999998765
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=4.1e-30 Score=294.11 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=130.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|+..|+++|.++|+.++ .|+++|+++|||||||++|++|+++.+... ....+.++|||+|
T Consensus 244 ~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~vLvl~P 304 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLAT 304 (936)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------CSSCCCCEEEECS
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------cccCCCeEEEEeC
Confidence 467799999999999998 699999999999999999999998876321 1122568999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ 352 (547)
|++|+.|+++++..++...++++..++|+.....+...+..+++|+|+||++|..++.... ...+.++++|||||||+
T Consensus 305 t~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~ 382 (936)
T 4a2w_A 305 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHN 382 (936)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGG
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccc
Confidence 9999999999999999988999999999987655444555578999999999999986532 22578899999999999
Q ss_pred hhhcCChHHHH-HHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 353 MIENGHFRELQ-SIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 353 ll~~~~~~~l~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
+...+.+..+. .++..... ......|+++||||+..
T Consensus 383 ~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~l~LSATp~~ 419 (936)
T 4a2w_A 383 TTGNHPYNVLMTRYLEQKFN--------------------SASQLPQILGLTASVGV 419 (936)
T ss_dssp CSTTCHHHHHHHHHHHHHHT--------------------TCSCCCEEEEEESCCCC
T ss_pred cCCCccHHHHHHHHHHHhhc--------------------cCCCcCeEEEecCCccc
Confidence 98654333322 22221100 01145799999999953
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=1.1e-29 Score=276.64 Aligned_cols=308 Identities=16% Similarity=0.172 Sum_probs=211.1
Q ss_pred HcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEc
Q 009003 192 RLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIIT 271 (547)
Q Consensus 192 ~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 271 (547)
.+|+ +|+++|..++|.++ .|+ |++++||+|||++|++|++...+ .+..|+||+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL-----------------------~g~~v~VvT 159 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNAL-----------------------AGNGVHIVT 159 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHT-----------------------TTSCEEEEE
T ss_pred HcCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHH-----------------------hCCCeEEEe
Confidence 3788 99999999999987 676 99999999999999999975432 134799999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC---CCcccCCCccEEEE
Q 009003 272 PTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 347 (547)
Q Consensus 272 Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~---~~~~~l~~l~~lVi 347 (547)
||++||.|+++++..++..+|+++.+++||.+..... ...++||+|+||++| +++|...- ...+.++.+.++||
T Consensus 160 pTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 160 VNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEE
Confidence 9999999999999999999999999999999865433 333689999999999 77775431 12356889999999
Q ss_pred eccchhh-h---------------cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEE-----------
Q 009003 348 DEADRMI-E---------------NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTL----------- 400 (547)
Q Consensus 348 DEah~ll-~---------------~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i----------- 400 (547)
||||+|| + ++++..+..|+..++... ++ ..-.+.+|++
T Consensus 238 DEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~------dy---------~vDek~rqv~Lte~G~~~~e~ 302 (922)
T 1nkt_A 238 DEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDV------HY---------EVDLRKRTVGVHEKGVEFVED 302 (922)
T ss_dssp TTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTT------TE---------EEETTTTEEEECHHHHHHHHH
T ss_pred eChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccc------cc---------eeccCcceEEecHhHHHHHHH
Confidence 9999998 4 357889999999986210 00 0111467888
Q ss_pred ------EEeccCCCChhHHH-Hhhhc-ccc-c--cc----------ccC--------CcchHHH----------------
Q 009003 401 ------VFSATIALSADFRK-KLKHG-SLK-S--KQ----------SVN--------GLNSIET---------------- 435 (547)
Q Consensus 401 ------~~SATl~~~~~~~~-~l~~~-~~~-~--~~----------~~~--------~~~~i~~---------------- 435 (547)
+||||.+....... .+... .+. . +. ... ....+..
T Consensus 303 ~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~T 382 (922)
T 1nkt_A 303 QLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQT 382 (922)
T ss_dssp HHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEE
T ss_pred HhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccc
Confidence 89999763222211 11100 000 0 00 000 0000111
Q ss_pred -----------------------------HHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh-c-
Q 009003 436 -----------------------------LSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV-H- 484 (547)
Q Consensus 436 -----------------------------l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~- 484 (547)
+...++ ..++.++........-...++.+....|...|...+.. +
T Consensus 383 latIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~----l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~ 458 (922)
T 1nkt_A 383 LATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK----LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA 458 (922)
T ss_dssp EEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC----CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeehHHHHHhhhhhhccccCchhHHHHHHHHhC----CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh
Confidence 111111 11222222111111111234556667888888887754 2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh--cCCCCCCCCC
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR--KRPKGDRGKD 547 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~--k~~~g~~~~~ 547 (547)
.+.++||||+|++.++.|+..|...|+++.++||++.+.+|..+..+|+.|.. ---..+||.|
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G~VtIATnmAgRGtD 523 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAGRGTD 523 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEETTCSTTCC
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCeEEEecchhhcCcc
Confidence 45689999999999999999999999999999999998888888888887732 1223456654
No 52
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.2e-28 Score=262.09 Aligned_cols=162 Identities=23% Similarity=0.290 Sum_probs=131.0
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+|+|.++++.++ .+ ++|+++|||+|||++++++++..+.. .+.++|||+||++|
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------------------~~~~~liv~P~~~L 64 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------------------YGGKVLMLAPTKPL 64 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHHH----------------------SCSCEEEECSSHHH
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------------------CCCeEEEEECCHHH
Confidence 79999999999998 46 99999999999999999999887641 24579999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~ 356 (547)
+.|+.+++..++...+.++..++|+........ ....++|+|+||+.|...+... .+.+..+++|||||||++...
T Consensus 65 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHhCcchhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCC
Confidence 999999999987545568888999888765433 3346899999999999888643 356889999999999999765
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 357 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
..+..+...+.... ...++++||||+.+..
T Consensus 141 ~~~~~~~~~~~~~~------------------------~~~~~l~lTaTp~~~~ 170 (494)
T 1wp9_A 141 YAYVFIAREYKRQA------------------------KNPLVIGLTASPGSTP 170 (494)
T ss_dssp CHHHHHHHHHHHHC------------------------SSCCEEEEESCSCSSH
T ss_pred CcHHHHHHHHHhcC------------------------CCCeEEEEecCCCCCc
Confidence 55555555555443 4578999999998544
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=7.6e-30 Score=285.14 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=114.2
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+++|.++++.++ .|+++|+++|||+|||++|++|+++.+...+.. ..+.++|||+||++|
T Consensus 7 ~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----------------~~~~~vlvl~P~~~L 68 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----------------SEPGKVIVLVNKVLL 68 (699)
T ss_dssp CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----------------TCCCCBCCEESCSHH
T ss_pred CccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----------------CCCCeEEEEECCHHH
Confidence 79999999999998 689999999999999999999999988765321 223579999999999
Q ss_pred HHHH-HHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC---CCcccCCCccEEEEeccch
Q 009003 277 ALQV-TDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE---KHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 277 a~qv-~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~---~~~~~l~~l~~lViDEah~ 352 (547)
+.|+ ++++..++.. ++++..++|+.........+...++|+|+||++|...+.+.. ...+.+..+++|||||||+
T Consensus 69 ~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 69 VEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp HHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred HHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 9999 9999998765 588999999877655445555679999999999998884321 2235678899999999999
Q ss_pred hhhcCChHH
Q 009003 353 MIENGHFRE 361 (547)
Q Consensus 353 ll~~~~~~~ 361 (547)
+...+.+..
T Consensus 148 ~~~~~~~~~ 156 (699)
T 4gl2_A 148 TNKEAVYNN 156 (699)
T ss_dssp CBTTBSSCS
T ss_pred cCccchHHH
Confidence 865444333
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.2e-26 Score=269.43 Aligned_cols=268 Identities=18% Similarity=0.169 Sum_probs=192.4
Q ss_pred CCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHHh---cCC--cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 180 LRLHPLLMKSIY-RLQFKEPTPIQKACIPAAAH---QGK--DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 180 l~l~~~l~~~l~-~~~~~~~~~iQ~~~i~~~l~---~~~--dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
+.++..+.+.+. .++| .|||+|.++|+.++. +++ ++|+|++||+|||++|+++++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 456777776664 4677 579999999999874 255 9999999999999999998877641
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH---hc-CCCcEEEeChHHHHHHH
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL---LK-ARPEVVVGTPGRLWELM 329 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~dIlv~TP~~l~~~l 329 (547)
.+.++|||+||++||.|+++.+.......++++..+++.......... +. ..++|+|+||+.|.
T Consensus 651 ---------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~--- 718 (1151)
T 2eyq_A 651 ---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ--- 718 (1151)
T ss_dssp ---------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH---
T ss_pred ---------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---
Confidence 246899999999999999999999888888999999887776554332 33 36999999997653
Q ss_pred hcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 330 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
. .+.+.++.+|||||||++. .....++..++ ...++++||||+...
T Consensus 719 -~----~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~------------------------~~~~vl~lSATp~p~ 764 (1151)
T 2eyq_A 719 -S----DVKFKDLGLLIVDEEHRFG-----VRHKERIKAMR------------------------ANVDILTLTATPIPR 764 (1151)
T ss_dssp -S----CCCCSSEEEEEEESGGGSC-----HHHHHHHHHHH------------------------TTSEEEEEESSCCCH
T ss_pred -C----CccccccceEEEechHhcC-----hHHHHHHHHhc------------------------CCCCEEEEcCCCChh
Confidence 2 2568899999999999963 23344444443 457999999997622
Q ss_pred hhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh-cCCCc
Q 009003 410 ADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV-HGQGR 488 (547)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~k 488 (547)
. .... . ....+...+..... ....+..++.... .......++.. ..+++
T Consensus 765 ~--l~~~---------------------~--~~~~~~~~i~~~~~--~r~~i~~~~~~~~---~~~i~~~il~~l~~g~q 814 (1151)
T 2eyq_A 765 T--LNMA---------------------M--SGMRDLSIIATPPA--RRLAVKTFVREYD---SMVVREAILREILRGGQ 814 (1151)
T ss_dssp H--HHHH---------------------H--TTTSEEEECCCCCC--BCBCEEEEEEECC---HHHHHHHHHHHHTTTCE
T ss_pred h--HHHH---------------------H--hcCCCceEEecCCC--CccccEEEEecCC---HHHHHHHHHHHHhcCCe
Confidence 1 1111 0 01112222222111 1112333333332 22233333332 25789
Q ss_pred EEEEeCChHHHHHHHHHHHHc--CCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 489 TIVFCTSIAALRHISSLLKIL--GIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~--g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++|||+++..++.++..|+.. ++.+..+||+|++.+|.+++++|++|..+
T Consensus 815 vlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~ 866 (1151)
T 2eyq_A 815 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 866 (1151)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 999999999999999999987 88999999999999999999999987643
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.8e-27 Score=264.53 Aligned_cols=265 Identities=19% Similarity=0.235 Sum_probs=182.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHhc-----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009003 184 PLLMKSIYRLQFKEPTPIQKACIPAAAHQ-----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEK 258 (547)
Q Consensus 184 ~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~-----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~ 258 (547)
..+...+..++| .||++|.++|+.++.. ..+++++||||||||++|++|+++.+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 445556678999 9999999999998742 1599999999999999999999988632
Q ss_pred cCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH---hc-CCCcEEEeChHHHHHHHhcCCC
Q 009003 259 YAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL---LK-ARPEVVVGTPGRLWELMSGGEK 334 (547)
Q Consensus 259 ~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~dIlv~TP~~l~~~l~~~~~ 334 (547)
+.++|||+||++||.|+++.+..++...++++..++|+......... +. ..++|+|+||+.|..
T Consensus 417 -----g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------- 484 (780)
T 1gm5_A 417 -----GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------- 484 (780)
T ss_dssp -----TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------
T ss_pred -----CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------
Confidence 35899999999999999999999999889999999999987654332 33 459999999988753
Q ss_pred CcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHH
Q 009003 335 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRK 414 (547)
Q Consensus 335 ~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 414 (547)
...+.++++|||||||++.... ...+.. . ...+|+++||||+....
T Consensus 485 -~~~~~~l~lVVIDEaHr~g~~q--------r~~l~~--------------------~-~~~~~vL~mSATp~p~t---- 530 (780)
T 1gm5_A 485 -DVHFKNLGLVIIDEQHRFGVKQ--------REALMN--------------------K-GKMVDTLVMSATPIPRS---- 530 (780)
T ss_dssp -CCCCSCCCEEEEESCCCC-------------CCCCS--------------------S-SSCCCEEEEESSCCCHH----
T ss_pred -hhhccCCceEEecccchhhHHH--------HHHHHH--------------------h-CCCCCEEEEeCCCCHHH----
Confidence 1557899999999999863211 001110 0 03578999999975211
Q ss_pred HhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHh--cCCCcEEEE
Q 009003 415 KLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSV--HGQGRTIVF 492 (547)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~LVF 492 (547)
+........+...+...... ...+...++ . ..+...+...+.. ..+++++||
T Consensus 531 ---------------------l~~~~~g~~~~s~i~~~p~~--r~~i~~~~~--~-~~~~~~l~~~i~~~l~~g~qvlVf 584 (780)
T 1gm5_A 531 ---------------------MALAFYGDLDVTVIDEMPPG--RKEVQTMLV--P-MDRVNEVYEFVRQEVMRGGQAFIV 584 (780)
T ss_dssp ---------------------HHHHHTCCSSCEEECCCCSS--CCCCEECCC--C-SSTHHHHHHHHHHHTTTSCCBCCB
T ss_pred ---------------------HHHHHhCCcceeeeeccCCC--CcceEEEEe--c-cchHHHHHHHHHHHHhcCCcEEEE
Confidence 11111011122222211110 111222111 2 2233344444432 246789999
Q ss_pred eCChH--------HHHHHHHHHHH---cCCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 493 CTSIA--------ALRHISSLLKI---LGIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 493 ~~s~~--------~a~~L~~~L~~---~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
|++++ .+..++..|.. .++.+..+||+|++.+|..++++|++|..+.
T Consensus 585 ~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~I 642 (780)
T 1gm5_A 585 YPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 642 (780)
T ss_dssp CCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred ecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 99764 57888888988 4789999999999999999999999987653
No 56
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=1.9e-27 Score=255.98 Aligned_cols=276 Identities=16% Similarity=0.114 Sum_probs=182.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+++|.++++.++ .++++++++|||+|||++|+++++..+.. ...++|||+||++|
T Consensus 113 ~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~vlvl~P~~~L 169 (510)
T 2oca_A 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTAL 169 (510)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------CSSEEEEEESSHHH
T ss_pred CCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------CCCeEEEEECcHHH
Confidence 89999999999998 57999999999999999999988877632 12489999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~ 356 (547)
+.|+++.+..++...++.+..++|+.....+ +....+|+|+||+.|... ....+.++.+|||||||++..
T Consensus 170 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~- 239 (510)
T 2oca_A 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG- 239 (510)
T ss_dssp HHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCc-
Confidence 9999999999876667788888888766443 456789999999976532 224577899999999999864
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhH-HHHhhhcccccccccCCcchHHH
Q 009003 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADF-RKKLKHGSLKSKQSVNGLNSIET 435 (547)
Q Consensus 357 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~ 435 (547)
..+..++..++ ...++|+||||++..... ...... +......... ..
T Consensus 240 ---~~~~~il~~~~------------------------~~~~~l~lSATp~~~~~~~~~~~~~--~~~~~~~~~~---~~ 287 (510)
T 2oca_A 240 ---KSISSIISGLN------------------------NCMFKFGLSGSLRDGKANIMQYVGM--FGEIFKPVTT---SK 287 (510)
T ss_dssp ---HHHHHHGGGCT------------------------TCCEEEEEESCGGGCSSCHHHHHHH--HCSEECCCCC---C-
T ss_pred ---ccHHHHHHhcc------------------------cCcEEEEEEeCCCCCcccHHHhHHh--hCCeEEeeCH---HH
Confidence 45667776665 457999999999644211 111100 0000000000 00
Q ss_pred HHHHhcccC-ce--eEEecccccc---ccccceE-EEEEccccchHHHHHHHHHhc---CCCcEEEEeCChHHHHHHHHH
Q 009003 436 LSERAGMRA-NV--AIVDLTNMCV---LANKLEE-SFIECKEEDKDAYLYYILSVH---GQGRTIVFCTSIAALRHISSL 505 (547)
Q Consensus 436 l~~~~~~~~-~~--~~i~~~~~~~---~~~~i~~-~~~~~~~~~k~~~l~~ll~~~---~~~k~LVF~~s~~~a~~L~~~ 505 (547)
+.....+.+ .. ..+....... ....+.+ ....+....+...+..++... ...++||||+ +.++..|+..
T Consensus 288 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~ 366 (510)
T 2oca_A 288 LMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDL 366 (510)
T ss_dssp --------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHH
T ss_pred HhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHH
Confidence 000000000 00 0011100000 0000000 001111223444566665543 4456667766 8999999999
Q ss_pred HHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 506 LKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 506 L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
|...+..+..+||+|+..+|.++++.|+++..+
T Consensus 367 L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~ 399 (510)
T 2oca_A 367 IKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI 399 (510)
T ss_dssp HHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC
T ss_pred HHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC
Confidence 999988999999999999999999999988654
No 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=6.9e-27 Score=261.22 Aligned_cols=274 Identities=15% Similarity=0.200 Sum_probs=189.8
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDK 252 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 252 (547)
+...|.++++++.+.+.+...+ ..|+++|+++|+.++..+++++++||||||||+ ++|++ +....
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~l--l~~~~---------- 134 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQF--VLFDE---------- 134 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHH--HHHHH----------
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHH--HHHhc----------
Confidence 4578999999999999999988 789999999999999878899999999999997 67766 22111
Q ss_pred hhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhh-cCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhc
Q 009003 253 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVA-KGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 253 ~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~ 331 (547)
.....+.+++|++|+|+||.|++..+.... ..++..+..-... .......++|+|+|||+|.+.+..
T Consensus 135 ------~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~------~~~~~~~~~I~v~T~G~l~r~l~~ 202 (773)
T 2xau_A 135 ------MPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF------ENKTSNKTILKYMTDGMLLREAME 202 (773)
T ss_dssp ------CGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT------EEECCTTCSEEEEEHHHHHHHHHH
T ss_pred ------cccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecc------ccccCCCCCEEEECHHHHHHHHhh
Confidence 001124689999999999999998775442 1222222211110 111234689999999999987765
Q ss_pred CCCCcccCCCccEEEEeccch-hhhcCC-hHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 332 GEKHLVELHTLSFFVLDEADR-MIENGH-FRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEah~-ll~~~~-~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
. ..+.++++|||||||. .++... ...+..++... ...|+|+||||+. .
T Consensus 203 ~----~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-------------------------~~~~iIl~SAT~~-~ 252 (773)
T 2xau_A 203 D----HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-------------------------PDLKIIIMSATLD-A 252 (773)
T ss_dssp S----TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-------------------------TTCEEEEEESCSC-C
T ss_pred C----ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-------------------------CCceEEEEecccc-H
Confidence 3 5689999999999996 554222 23344444333 3579999999995 2
Q ss_pred hhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchH----HHHHHHHHhcC
Q 009003 410 ADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKD----AYLYYILSVHG 485 (547)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~ll~~~~ 485 (547)
..+..++. +..++....... .+.++|..+...... ..+..++....
T Consensus 253 ~~l~~~~~---------------------------~~~vi~v~gr~~---pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 302 (773)
T 2xau_A 253 EKFQRYFN---------------------------DAPLLAVPGRTY---PVELYYTPEFQRDYLDSAIRTVLQIHATEE 302 (773)
T ss_dssp HHHHHHTT---------------------------SCCEEECCCCCC---CEEEECCSSCCSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhc---------------------------CCCcccccCccc---ceEEEEecCCchhHHHHHHHHHHHHHHhcC
Confidence 33333331 111222222111 244445444443332 23344444556
Q ss_pred CCcEEEEeCChHHHHHHHHHHHH-----------cCCceEEecCCcCHHHHHHHHHHHH
Q 009003 486 QGRTIVFCTSIAALRHISSLLKI-----------LGIDVWTLHAQMQQRARLKLFSQMI 533 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~-----------~g~~v~~lhg~m~~~eR~~il~~F~ 533 (547)
.+++||||+++.+|+.++..|.. .++.+..+||+|++.+|.++++.|+
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 89999999999999999999985 5788999999999999999999998
No 58
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.94 E-value=4e-26 Score=243.24 Aligned_cols=256 Identities=19% Similarity=0.119 Sum_probs=174.4
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+++|.++++.++ .++++++++|||+|||++|++++... +.++||||||++|
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~--------------------------~~~~Lvl~P~~~L 145 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEECCHHH
Confidence 79999999999997 57889999999999999999987653 2479999999999
Q ss_pred HHHHHHHHHHhhcCCCcE-EEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 277 ALQVTDHLKGVAKGINVR-VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
+.|+++++..+ ++. +..++|+.. ...+|+|+||+.|...+.. ...++.+|||||||++..
T Consensus 146 ~~Q~~~~~~~~----~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 146 AEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp HHHHHHHGGGG----CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTS
T ss_pred HHHHHHHHHhC----CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCC
Confidence 99999999985 777 887877754 3578999999999766532 134689999999999987
Q ss_pred cCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHH
Q 009003 356 NGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIET 435 (547)
Q Consensus 356 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ 435 (547)
.++.. ++..++ ..++|+||||+.........+....... .. ...+..
T Consensus 207 ~~~~~----~~~~~~-------------------------~~~~l~lSATp~~~~~~~~~l~~~~~~~-~~---~~~~~~ 253 (472)
T 2fwr_A 207 ESYVQ----IAQMSI-------------------------APFRLGLTATFEREDGRHEILKEVVGGK-VF---ELFPDS 253 (472)
T ss_dssp TTTHH----HHHTCC-------------------------CSEEEEEESCCCCTTSGGGSHHHHTCCE-EE---ECCHHH
T ss_pred hHHHH----HHHhcC-------------------------CCeEEEEecCccCCCCHHHHHHHHhCCe-Ee---ecCHHH
Confidence 66543 444443 4689999999974432111111000000 00 000111
Q ss_pred HHHHhcccCceeE----Eecccccc----------------------ccccceEE---------------------EEEc
Q 009003 436 LSERAGMRANVAI----VDLTNMCV----------------------LANKLEES---------------------FIEC 468 (547)
Q Consensus 436 l~~~~~~~~~~~~----i~~~~~~~----------------------~~~~i~~~---------------------~~~~ 468 (547)
+... +...+.. +....... ....+.+. .+.+
T Consensus 254 l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (472)
T 2fwr_A 254 LAGK--HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAF 331 (472)
T ss_dssp HTSC--CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHH
T ss_pred HhcC--cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhh
Confidence 1000 0011100 00000000 00000000 0112
Q ss_pred cccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 469 KEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 469 ~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
....|...|..++..+.++++||||+++..++.++..|. +..+||+|+..+|.+++++|+++..+
T Consensus 332 ~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~ 396 (472)
T 2fwr_A 332 NSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR 396 (472)
T ss_dssp SCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS
T ss_pred cChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC
Confidence 344567788888888888999999999999999999883 66899999999999999999998654
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.93 E-value=6.8e-27 Score=247.27 Aligned_cols=235 Identities=19% Similarity=0.165 Sum_probs=158.0
Q ss_pred CCCCCcHHHHHHHHHHHhcCCcE-EEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 194 QFKEPTPIQKACIPAAAHQGKDV-IGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~~l~~~~dv-li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
|+..|+|+|+ +||.++ .++++ |+++|||||||++|++|++..+... ++++||++|
T Consensus 1 G~~q~~~iq~-~i~~~l-~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------------------~~~~lvl~P 56 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALLR----------------------RLRTLILAP 56 (451)
T ss_dssp CCCCCSCCCC-CCGGGG-STTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------------------TCCEEEEES
T ss_pred CCCCCCCcHH-HHHHHH-hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------------------CCcEEEECC
Confidence 6788999985 799998 45555 9999999999999999999876431 468999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 352 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ 352 (547)
||+||.|+++.+.. +.+....+.... ....+..|.++|++.|...+.+. ..+.++++|||||||+
T Consensus 57 tr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~ 121 (451)
T 2jlq_A 57 TRVVAAEMEEALRG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHF 121 (451)
T ss_dssp SHHHHHHHHHHTTT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTC
T ss_pred CHHHHHHHHHHhcC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCcc
Confidence 99999999998852 233221111110 12345679999999998887653 5688999999999998
Q ss_pred hhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcch
Q 009003 353 MIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNS 432 (547)
Q Consensus 353 ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (547)
+ +.++...+..+..... ...+|+|+||||++.... ..
T Consensus 122 ~-~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~SAT~~~~~~--~~----------------- 158 (451)
T 2jlq_A 122 T-DPCSVAARGYISTRVE-----------------------MGEAAAIFMTATPPGSTD--PF----------------- 158 (451)
T ss_dssp C-SHHHHHHHHHHHHHHH-----------------------TTSCEEEEECSSCTTCCC--SS-----------------
T ss_pred C-CcchHHHHHHHHHhhc-----------------------CCCceEEEEccCCCccch--hh-----------------
Confidence 7 3332222222222111 146899999999973210 00
Q ss_pred HHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCc
Q 009003 433 IETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID 512 (547)
Q Consensus 433 i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~ 512 (547)
...+..++..... .+. ..+ . .+...+... .+++||||+|++.|+.++..|+..|+.
T Consensus 159 ---------~~~~~~~~~~~~~--~p~--~~~------~----~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~ 214 (451)
T 2jlq_A 159 ---------PQSNSPIEDIERE--IPE--RSW------N----TGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKR 214 (451)
T ss_dssp ---------CCCSSCEEEEECC--CCS--SCC------S----SSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCC
T ss_pred ---------hcCCCceEecCcc--CCc--hhh------H----HHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCe
Confidence 0011111111100 000 000 0 112233333 679999999999999999999999999
Q ss_pred eEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 513 VWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 513 v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+..+||++. .++++.|++|..+
T Consensus 215 ~~~lh~~~~----~~~~~~f~~g~~~ 236 (451)
T 2jlq_A 215 VIQLSRKTF----DTEYPKTKLTDWD 236 (451)
T ss_dssp EEEECTTTH----HHHGGGGGSSCCS
T ss_pred EEECCHHHH----HHHHHhhccCCce
Confidence 999999865 5788999887654
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.93 E-value=1.8e-27 Score=259.67 Aligned_cols=249 Identities=19% Similarity=0.155 Sum_probs=170.4
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 009003 180 LRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKY 259 (547)
Q Consensus 180 l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~ 259 (547)
+++++.+.+++... ...++|+|++++|.++ +++++|++||||||||++|++|+++.+...
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------------ 214 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALKR------------------ 214 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------------
Confidence 45666655555443 4789999988888776 799999999999999999999999987531
Q ss_pred CCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 260 APKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 260 ~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
++++|||+|||+||.|+++.+..+ .+. +.+..- ......+..|.++|.+.|...+... ..+
T Consensus 215 ----~~~vLvl~PtreLa~Qi~~~l~~~------~v~-~~~~~l----~~~~tp~~~i~~~t~~~l~~~l~~~----~~l 275 (618)
T 2whx_A 215 ----RLRTLILAPTRVVAAEMEEALRGL------PIR-YQTPAV----KSDHTGREIVDLMCHATFTTRLLSS----TRV 275 (618)
T ss_dssp ----TCCEEEEESSHHHHHHHHHHTTTS------CEE-ECCTTS----SCCCCSSSCEEEEEHHHHHHHHHHC----SSC
T ss_pred ----CCeEEEEcChHHHHHHHHHHhcCC------cee-Eecccc----eeccCCCceEEEEChHHHHHHHhcc----ccc
Confidence 468999999999999999988632 232 111110 0011234567788999887766543 458
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhc
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 419 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 419 (547)
.++++|||||||++ +.++...+..|+..++. ..+|+|+||||++....
T Consensus 276 ~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-----------------------~~~q~il~SAT~~~~~~-------- 323 (618)
T 2whx_A 276 PNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-----------------------GEAAAIFMTATPPGSTD-------- 323 (618)
T ss_dssp CCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-----------------------TSCEEEEECSSCTTCCC--------
T ss_pred cCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-----------------------cCccEEEEECCCchhhh--------
Confidence 99999999999998 57777777777766531 35799999999973321
Q ss_pred ccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHH
Q 009003 420 SLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAAL 499 (547)
Q Consensus 420 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a 499 (547)
.+ ...+...+..... ++.. +...+...+.. ..+++||||+|++.|
T Consensus 324 ---------------~~-----~~~~~~~~~v~~~-------------~~~~-~~~~ll~~l~~-~~~~~LVF~~s~~~a 368 (618)
T 2whx_A 324 ---------------PF-----PQSNSPIEDIERE-------------IPER-SWNTGFDWITD-YQGKTVWFVPSIKAG 368 (618)
T ss_dssp ---------------SS-----CCCSSCEEEEECC-------------CCSS-CCSSSCHHHHH-CCSCEEEECSSHHHH
T ss_pred ---------------hh-----hccCCceeeeccc-------------CCHH-HHHHHHHHHHh-CCCCEEEEECChhHH
Confidence 00 0111111111110 0001 11112222333 367999999999999
Q ss_pred HHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 500 RHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 500 ~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+.++..|+..|+.+..+||. +|.++++.|++|..+
T Consensus 369 ~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~ 403 (618)
T 2whx_A 369 NDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD 403 (618)
T ss_dssp HHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS
T ss_pred HHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE
Confidence 99999999999999999985 788999999998654
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.92 E-value=2.9e-26 Score=248.31 Aligned_cols=216 Identities=17% Similarity=0.188 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHH
Q 009003 200 PIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQ 279 (547)
Q Consensus 200 ~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q 279 (547)
..|++.|+.++..+++++++||||||||++|.+|+++. +.++||++|||+||.|
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------------------g~~vLVl~PTReLA~Q 272 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------------------GYKVLVLNPSVAATLG 272 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------------------TCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------------------CCeEEEEcchHHHHHH
Confidence 33445555555578999999999999999999988752 3489999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCCh
Q 009003 280 VTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 359 (547)
Q Consensus 280 v~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~ 359 (547)
+++.+.... +..+...+|+.. ...+++|+|+||++|+ .. ..+.++++++|||||||.+ +.++.
T Consensus 273 ia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~---~~l~l~~l~~lVlDEAH~l-~~~~~ 335 (666)
T 3o8b_A 273 FGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD---GGCSGGAYDIIICDECHST-DSTTI 335 (666)
T ss_dssp HHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HT---TSCCTTSCSEEEETTTTCC-SHHHH
T ss_pred HHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hC---CCcccCcccEEEEccchhc-CccHH
Confidence 999876553 445556666643 4567899999999984 22 2467889999999999754 57788
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHH
Q 009003 360 RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSER 439 (547)
Q Consensus 360 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~ 439 (547)
..+..|++.++.. ....+++||||++.... .
T Consensus 336 ~~l~~Il~~l~~~----------------------~~~llil~SAT~~~~i~---------------~------------ 366 (666)
T 3o8b_A 336 LGIGTVLDQAETA----------------------GARLVVLATATPPGSVT---------------V------------ 366 (666)
T ss_dssp HHHHHHHHHTTTT----------------------TCSEEEEEESSCTTCCC---------------C------------
T ss_pred HHHHHHHHhhhhc----------------------CCceEEEECCCCCcccc---------------c------------
Confidence 8889999888721 22237888999984210 0
Q ss_pred hcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCC
Q 009003 440 AGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQ 519 (547)
Q Consensus 440 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~ 519 (547)
..++...+....... +. + ...... +.....+++||||+|++.|+.++..|+..|+.+..+||+
T Consensus 367 --~~p~i~~v~~~~~~~----i~-~---~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~ 429 (666)
T 3o8b_A 367 --PHPNIEEVALSNTGE----IP-F---YGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRG 429 (666)
T ss_dssp --CCTTEEEEECBSCSS----EE-E---TTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred --CCcceEEEeecccch----hH-H---HHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCC
Confidence 011111111111000 00 0 000000 123357899999999999999999999999999999999
Q ss_pred cCHHH
Q 009003 520 MQQRA 524 (547)
Q Consensus 520 m~~~e 524 (547)
|++.+
T Consensus 430 l~q~e 434 (666)
T 3o8b_A 430 LDVSV 434 (666)
T ss_dssp SCGGG
T ss_pred CCHHH
Confidence 99875
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=5.2e-24 Score=233.13 Aligned_cols=289 Identities=15% Similarity=0.108 Sum_probs=155.4
Q ss_pred CCcHHHHHHHHHHHh----cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 197 EPTPIQKACIPAAAH----QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~----~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
.|+++|.++++.++. ..++++++++||||||++++ +++..+..... .......+.++|||+|
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~-------------~~~~~~~~~~vlil~P 243 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARW-------------NRTGDYRKPRILFLAD 243 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTC-------------CSSCSSSCCCEEEEEC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhccc-------------ccccccCCCeEEEEeC
Confidence 799999999998874 34679999999999999954 44444433210 0001124678999999
Q ss_pred CHHHHHHHH-HHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC-CCCcccCCCccEEEEecc
Q 009003 273 TRELALQVT-DHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG-EKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 273 tr~La~qv~-~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~-~~~~~~l~~l~~lViDEa 350 (547)
|++|+.|++ +.+..++ ..+..+.++ ......+|+|+||++|...+... ....+....+++||||||
T Consensus 244 ~~~L~~Q~~~~~~~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEa 311 (590)
T 3h1t_A 244 RNVLVDDPKDKTFTPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDEC 311 (590)
T ss_dssp -----------CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCC
T ss_pred CHHHHHHHHHHHHHhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECC
Confidence 999999999 7777663 333333332 23456899999999998765321 122345678999999999
Q ss_pred chhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChh--HHHHhhhcccccccccC
Q 009003 351 DRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSAD--FRKKLKHGSLKSKQSVN 428 (547)
Q Consensus 351 h~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~--~~~~l~~~~~~~~~~~~ 428 (547)
|++... ....+..++..++ ..++|+||||+..... ....+.. ..
T Consensus 312 H~~~~~-~~~~~~~il~~~~-------------------------~~~~l~lTATP~~~~~~~~~~~f~~-----~~--- 357 (590)
T 3h1t_A 312 HRGSAR-DNSNWREILEYFE-------------------------PAFQIGMTATPLREDNRDTYRYFGN-----PI--- 357 (590)
T ss_dssp C----------CHHHHHHST-------------------------TSEEEEEESSCSCTTTHHHHHHSCS-----CS---
T ss_pred cccccc-chHHHHHHHHhCC-------------------------cceEEEeccccccccchhHHHHcCC-----ce---
Confidence 999743 2355567777775 3589999999874432 2222211 00
Q ss_pred CcchHHHHHHHhcccCceeEEeccccccc-------------cccceEEEEEccc-------cchHHH----HHHHHHh-
Q 009003 429 GLNSIETLSERAGMRANVAIVDLTNMCVL-------------ANKLEESFIECKE-------EDKDAY----LYYILSV- 483 (547)
Q Consensus 429 ~~~~i~~l~~~~~~~~~~~~i~~~~~~~~-------------~~~i~~~~~~~~~-------~~k~~~----l~~ll~~- 483 (547)
....+....... +..++.++........ ...+......... ..+... +..++..
T Consensus 358 ~~~~~~~~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~ 436 (590)
T 3h1t_A 358 YTYSLRQGIDDG-FLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT 436 (590)
T ss_dssp EEECHHHHHHHT-SSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred EecCHHHHhhCC-ccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc
Confidence 011222322221 1222222211110000 0000000000000 111222 2233333
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHHcCCc--------eEEecCCcCHHHHHHHHHHHHhhhhc-------CCCCCCCCC
Q 009003 484 HGQGRTIVFCTSIAALRHISSLLKILGID--------VWTLHAQMQQRARLKLFSQMITWIRK-------RPKGDRGKD 547 (547)
Q Consensus 484 ~~~~k~LVF~~s~~~a~~L~~~L~~~g~~--------v~~lhg~m~~~eR~~il~~F~~~~~k-------~~~g~~~~~ 547 (547)
.+.+++||||+++.+|+.++..|...+.. +..+||.++. +|.+++++|+++..+ .-...+|.|
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiD 514 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVD 514 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCcc
Confidence 34589999999999999999999876542 7889999875 799999999997644 235667765
No 63
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.91 E-value=5.3e-26 Score=249.62 Aligned_cols=242 Identities=18% Similarity=0.220 Sum_probs=154.6
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHH-----hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009003 189 SIYRLQFK-----EPTPIQK-----ACIPAAA-----HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKG 253 (547)
Q Consensus 189 ~l~~~~~~-----~~~~iQ~-----~~i~~~l-----~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 253 (547)
+++.+||. .||++|+ ++||.++ ..++++|++||||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 44556766 8999999 9998765 2689999999999999999999999886432
Q ss_pred hhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCC
Q 009003 254 EEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGE 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~ 333 (547)
++++|||+||++||.|+++.+..+ ++.. ..+.. ......+.-+-+++.+.+...+...
T Consensus 270 ----------~~~~lilaPTr~La~Q~~~~l~~~----~i~~--~~~~l-----~~v~tp~~ll~~l~~~~l~~~l~~~- 327 (673)
T 2wv9_A 270 ----------RLRTAVLAPTRVVAAEMAEALRGL----PVRY--LTPAV-----QREHSGNEIVDVMCHATLTHRLMSP- 327 (673)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHTTTS----CCEE--CCC--------CCCCSCCCEEEEEHHHHHHHHHSS-
T ss_pred ----------CCcEEEEccHHHHHHHHHHHHhcC----Ceee--ecccc-----cccCCHHHHHHHHHhhhhHHHHhcc-
Confidence 468999999999999999988755 2221 11100 0001112234445555554444332
Q ss_pred CCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHH
Q 009003 334 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFR 413 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 413 (547)
..++++++|||||||++. ..+...+..+...++ ...+|+|+||||++....
T Consensus 328 ---~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~~-----------------------~~~~~vl~~SAT~~~~i~-- 378 (673)
T 2wv9_A 328 ---LRVPNYNLFVMDEAHFTD-PASIAARGYIATRVE-----------------------AGEAAAIFMTATPPGTSD-- 378 (673)
T ss_dssp ---SCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHHH-----------------------TTSCEEEEECSSCTTCCC--
T ss_pred ---cccccceEEEEeCCcccC-ccHHHHHHHHHHhcc-----------------------ccCCcEEEEcCCCChhhh--
Confidence 468899999999999981 222222233332221 045799999999973210
Q ss_pred HHhhhcccccccccCCcchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEe
Q 009003 414 KKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFC 493 (547)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~ 493 (547)
.+ ...+..+..... .+........+. .+.. ..+++||||
T Consensus 379 ---------------------~~-----~~~~~~i~~v~~-------------~~~~~~~~~~l~-~l~~-~~~~~lVF~ 417 (673)
T 2wv9_A 379 ---------------------PF-----PDTNSPVHDVSS-------------EIPDRAWSSGFE-WITD-YAGKTVWFV 417 (673)
T ss_dssp ---------------------SS-----CCCSSCEEEEEC-------------CCCSSCCSSCCH-HHHS-CCSCEEEEC
T ss_pred ---------------------hh-----cccCCceEEEee-------------ecCHHHHHHHHH-HHHh-CCCCEEEEE
Confidence 00 000111111000 011111111122 2222 478999999
Q ss_pred CChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 494 TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++++.|+.++..|+..++.+..+||. +|.++++.|++|..+
T Consensus 418 ~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~ 458 (673)
T 2wv9_A 418 ASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD 458 (673)
T ss_dssp SSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS
T ss_pred CCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce
Confidence 99999999999999999999999994 899999999988654
No 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.91 E-value=1e-25 Score=237.34 Aligned_cols=215 Identities=16% Similarity=0.200 Sum_probs=131.7
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcC
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKG 290 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~ 290 (547)
.+|+++|++||||||||++|++|+++.+... ++++|||+||++||.|+++.+..+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------------------~~~~lil~Ptr~La~Q~~~~l~~~--- 60 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR----------------------RLRTLVLAPTRVVLSEMKEAFHGL--- 60 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTTTS---
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------------------CCeEEEEcchHHHHHHHHHHHhcC---
Confidence 4799999999999999999999999877432 468999999999999999998744
Q ss_pred CCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcC-----CCCcccCCCccEEEEeccchhhhcCChHHHHHH
Q 009003 291 INVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGG-----EKHLVELHTLSFFVLDEADRMIENGHFRELQSI 365 (547)
Q Consensus 291 ~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~-----~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i 365 (547)
++. ...+.. -.|+||++++.++..+ ......+.++++|||||||++ +.++...+..+
T Consensus 61 -~v~--~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~ 122 (440)
T 1yks_A 61 -DVK--FHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWA 122 (440)
T ss_dssp -CEE--EESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHH
T ss_pred -CeE--Eecccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHH
Confidence 222 111110 0366666554322211 011144889999999999998 33332222222
Q ss_pred HHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCc
Q 009003 366 IDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRAN 445 (547)
Q Consensus 366 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 445 (547)
...++ +..+|+|+||||++.... .+.. ....
T Consensus 123 ~~~~~-----------------------~~~~~~l~~SAT~~~~~~-----------------------~~~~---~~~~ 153 (440)
T 1yks_A 123 AHRAR-----------------------ANESATILMTATPPGTSD-----------------------EFPH---SNGE 153 (440)
T ss_dssp HHHHH-----------------------TTSCEEEEECSSCTTCCC-----------------------SSCC---CSSC
T ss_pred HHHhc-----------------------cCCceEEEEeCCCCchhh-----------------------hhhh---cCCC
Confidence 22221 045899999999973210 0000 0000
Q ss_pred eeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHH
Q 009003 446 VAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525 (547)
Q Consensus 446 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR 525 (547)
...+. ..+........+. .+.. ..+++||||++++.|+.++..|+..|+.+..+|| .+|
T Consensus 154 ~~~~~---------------~~~~~~~~~~~~~-~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R 212 (440)
T 1yks_A 154 IEDVQ---------------TDIPSEPWNTGHD-WILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTF 212 (440)
T ss_dssp EEEEE---------------CCCCSSCCSSSCH-HHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSC
T ss_pred eeEee---------------eccChHHHHHHHH-HHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhH
Confidence 00010 0111111111222 2222 2679999999999999999999999999999999 478
Q ss_pred HHHHHHHHhhhhc
Q 009003 526 LKLFSQMITWIRK 538 (547)
Q Consensus 526 ~~il~~F~~~~~k 538 (547)
.++++.|++|..+
T Consensus 213 ~~~~~~F~~g~~~ 225 (440)
T 1yks_A 213 EREYPTIKQKKPD 225 (440)
T ss_dssp C--------CCCS
T ss_pred HHHHhhhcCCCce
Confidence 9999999998654
No 65
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.91 E-value=5.3e-25 Score=233.17 Aligned_cols=219 Identities=18% Similarity=0.207 Sum_probs=145.4
Q ss_pred HHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHH
Q 009003 207 PAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKG 286 (547)
Q Consensus 207 ~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~ 286 (547)
+.++.+++++|+++|||||||++|++|+++.+... ++++|||+|||+||.|+++.+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------------------~~~~lvl~Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------------------RLRTAVLAPTRVVAAEMAEALRG 72 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEECSHHHHHHHHHHTTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------------------CCcEEEECchHHHHHHHHHHhcC
Confidence 44556789999999999999999999999887531 46899999999999999999872
Q ss_pred hhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccch-----hhhcCChHH
Q 009003 287 VAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-----MIENGHFRE 361 (547)
Q Consensus 287 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~-----ll~~~~~~~ 361 (547)
+.+....+.... .-..+..|.++|.+.+...+... ..++++++|||||||+ ++.+++...
T Consensus 73 ------~~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~ 137 (459)
T 2z83_A 73 ------LPVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIAT 137 (459)
T ss_dssp ------SCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHH
T ss_pred ------ceEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHH
Confidence 233222111110 01234568889999887766543 5688999999999998 444433322
Q ss_pred HHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhc
Q 009003 362 LQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAG 441 (547)
Q Consensus 362 l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 441 (547)
+. . + ..+|+|+||||++.... .+..
T Consensus 138 ~~----~-~------------------------~~~~~il~SAT~~~~~~-----------------------~~~~--- 162 (459)
T 2z83_A 138 KV----E-L------------------------GEAAAIFMTATPPGTTD-----------------------PFPD--- 162 (459)
T ss_dssp HH----H-T------------------------TSCEEEEECSSCTTCCC-----------------------SSCC---
T ss_pred Hh----c-c------------------------CCccEEEEEcCCCcchh-----------------------hhcc---
Confidence 21 1 1 45799999999973210 0000
Q ss_pred ccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcC
Q 009003 442 MRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQ 521 (547)
Q Consensus 442 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~ 521 (547)
.......+. . .++. .....++.++... .+++||||+|+..|+.++..|+..|+.+..+||.
T Consensus 163 ~~~pi~~~~--~-------------~~~~-~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~-- 223 (459)
T 2z83_A 163 SNAPIHDLQ--D-------------EIPD-RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK-- 223 (459)
T ss_dssp CSSCEEEEE--C-------------CCCS-SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred CCCCeEEec--c-------------cCCc-chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH--
Confidence 000111110 0 0000 0011112233333 6899999999999999999999999999999995
Q ss_pred HHHHHHHHHHHHhhhhc
Q 009003 522 QRARLKLFSQMITWIRK 538 (547)
Q Consensus 522 ~~eR~~il~~F~~~~~k 538 (547)
+|.++++.|++|..+
T Consensus 224 --~R~~~~~~f~~g~~~ 238 (459)
T 2z83_A 224 --SYDTEYPKCKNGDWD 238 (459)
T ss_dssp --CCCCCGGGSSSCCCS
T ss_pred --HHHHHHhhccCCCce
Confidence 788899999887654
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.91 E-value=3.5e-24 Score=225.07 Aligned_cols=218 Identities=15% Similarity=0.165 Sum_probs=145.3
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
|+++|+++|||||||++|++|+++.+... ++++|||+||++||.|+++.+. +
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------------------g~~~lvl~Pt~~La~Q~~~~~~------~ 53 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK----------------------RLRTVILAPTRVVASEMYEALR------G 53 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------------------TCCEEEEESSHHHHHHHHHHTT------T
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------------------CCCEEEECcHHHHHHHHHHHhC------C
Confidence 78999999999999999999999776432 4689999999999999998876 3
Q ss_pred cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCCC
Q 009003 293 VRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 372 (547)
Q Consensus 293 ~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~ 372 (547)
+.+..+.|+... ....+..+.++|.+.+...+... ..+.++++|||||||++ ..++......+.....
T Consensus 54 ~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-- 121 (431)
T 2v6i_A 54 EPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-- 121 (431)
T ss_dssp SCEEEC--------------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH--
T ss_pred CeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh--
Confidence 455544444221 12234567788999887666442 55889999999999997 2333333333333221
Q ss_pred CCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEecc
Q 009003 373 NGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDLT 452 (547)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~ 452 (547)
+..+|+|+||||++.... .+.. .......+..
T Consensus 122 ---------------------~~~~~~l~~SAT~~~~~~-----------------------~~~~---~~~~i~~~~~- 153 (431)
T 2v6i_A 122 ---------------------MGDAGAIFMTATPPGTTE-----------------------AFPP---SNSPIIDEET- 153 (431)
T ss_dssp ---------------------TTSCEEEEEESSCTTCCC-----------------------SSCC---CSSCCEEEEC-
T ss_pred ---------------------CCCCcEEEEeCCCCcchh-----------------------hhcC---CCCceeeccc-
Confidence 146899999999983210 0000 0001100100
Q ss_pred ccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHH
Q 009003 453 NMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQM 532 (547)
Q Consensus 453 ~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F 532 (547)
.++. .+...++.++... .+++||||+++++|+.++..|+..++.+..+||+ +|.++++.|
T Consensus 154 --------------~~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f 213 (431)
T 2v6i_A 154 --------------RIPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKC 213 (431)
T ss_dssp --------------CCCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHH
T ss_pred --------------cCCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhh
Confidence 0011 1111223344443 6799999999999999999999999999999997 688999999
Q ss_pred Hhhhhc
Q 009003 533 ITWIRK 538 (547)
Q Consensus 533 ~~~~~k 538 (547)
++|..+
T Consensus 214 ~~g~~~ 219 (431)
T 2v6i_A 214 KSEKWD 219 (431)
T ss_dssp HHSCCS
T ss_pred cCCCCe
Confidence 998654
No 67
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=199.70 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=109.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
...|+++|.++++.++ .++++++++|||+|||++|++++++.+..... ...+.++||++||+
T Consensus 31 ~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----------------~~~~~~~lil~p~~ 92 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-----------------ASEPGKVIVLVNKV 92 (216)
T ss_dssp CCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-----------------TTCCCCEEEEESSH
T ss_pred CCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-----------------ccCCCcEEEEECHH
Confidence 3489999999999998 68999999999999999999999988754421 12356899999999
Q ss_pred HHHHH-HHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCC---CcccCCCccEEEEecc
Q 009003 275 ELALQ-VTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEK---HLVELHTLSFFVLDEA 350 (547)
Q Consensus 275 ~La~q-v~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~---~~~~l~~l~~lViDEa 350 (547)
+|+.| +.+.+..+... ++.+..++|+.........+...++|+|+||+.|...+..... ..+.+..+++||||||
T Consensus 93 ~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEa 171 (216)
T 3b6e_A 93 LLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171 (216)
T ss_dssp HHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC
T ss_pred HHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECc
Confidence 99999 77888887654 7788888887654333333334689999999999988865321 1245788999999999
Q ss_pred chhhhcCChHHHHH
Q 009003 351 DRMIENGHFRELQS 364 (547)
Q Consensus 351 h~ll~~~~~~~l~~ 364 (547)
|++...+++..+..
T Consensus 172 h~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 172 HHTNKEAVYNNIMR 185 (216)
T ss_dssp -------CHHHHHH
T ss_pred hhhccCCcHHHHHH
Confidence 99987777776643
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.88 E-value=3.3e-23 Score=226.92 Aligned_cols=215 Identities=15% Similarity=0.121 Sum_probs=147.6
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI 291 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~ 291 (547)
++++++++||||||||+ ++++.+... ..++|++|||+||.|+++.+..+
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~-----------------------~~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA-----------------------KSGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS-----------------------SSEEEEESSHHHHHHHHHHHHHT----
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc-----------------------CCeEEEeCHHHHHHHHHHHHHhc----
Confidence 68999999999999997 445544321 23599999999999999999886
Q ss_pred CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHhCCC
Q 009003 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 371 (547)
Q Consensus 292 ~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~~ 371 (547)
++.+..++|+..... ..-....+++++|++.+ ..+..+++|||||||++++.++...+..++..++.
T Consensus 203 g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 203 GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred CCcEEEEECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 778888888754300 00001256666666442 22467899999999999999999999988888762
Q ss_pred CCCCCCCCCcccccccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCCcchHHHHHHHhcccCceeEEec
Q 009003 372 TNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNGLNSIETLSERAGMRANVAIVDL 451 (547)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~i~~ 451 (547)
...|++++|||.+ ... .+....+ ....+...
T Consensus 270 -----------------------~~i~il~~SAT~~----~i~--------------------~l~~~~~--~~~~v~~~ 300 (677)
T 3rc3_A 270 -----------------------EEVHLCGEPAAID----LVM--------------------ELMYTTG--EEVEVRDY 300 (677)
T ss_dssp -----------------------EEEEEEECGGGHH----HHH--------------------HHHHHHT--CCEEEEEC
T ss_pred -----------------------cceEEEeccchHH----HHH--------------------HHHHhcC--CceEEEEe
Confidence 4579999999953 122 2222111 11111111
Q ss_pred cccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHH
Q 009003 452 TNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQ 531 (547)
Q Consensus 452 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~ 531 (547)
... . ...+.... + ..+... ..+.||||+|+++++.++..|...++.|..+||+|++.+|..+++.
T Consensus 301 ~r~--~-----~l~~~~~~------l-~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~ 365 (677)
T 3rc3_A 301 KRL--T-----PISVLDHA------L-ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKK 365 (677)
T ss_dssp CCS--S-----CEEECSSC------C-CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred eec--c-----hHHHHHHH------H-HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHH
Confidence 000 0 00000000 0 011112 3456899999999999999999999999999999999999999999
Q ss_pred HHh
Q 009003 532 MIT 534 (547)
Q Consensus 532 F~~ 534 (547)
|++
T Consensus 366 F~~ 368 (677)
T 3rc3_A 366 FND 368 (677)
T ss_dssp HHC
T ss_pred HHc
Confidence 998
No 69
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=7.1e-21 Score=206.97 Aligned_cols=150 Identities=20% Similarity=0.284 Sum_probs=123.2
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|+ +|+++|..++|.++ +|+ |+++.||||||++|++|++...+ .+..|+||+|
T Consensus 76 lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL-----------------------~G~qv~VvTP 128 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNAL-----------------------TGKGVHVVTV 128 (997)
T ss_dssp TCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHT-----------------------TCSCCEEEES
T ss_pred hCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHH-----------------------hCCCEEEEeC
Confidence 789 99999999999987 677 99999999999999999965431 1347999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHH-HHHHhcCC---CCcccCC---CccEE
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRL-WELMSGGE---KHLVELH---TLSFF 345 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~~---~~~~~l~---~l~~l 345 (547)
|++||.|+++.+..++..+++++.+++||.+...... ..++||+|+||++| +++|.... ...+.++ .+.++
T Consensus 129 TreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~l 206 (997)
T 2ipc_A 129 NDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYA 206 (997)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceE
Confidence 9999999999999999999999999999998644333 34689999999999 78886541 1224577 89999
Q ss_pred EEeccchhh-hcCC---------------hHHHHHHHHhCCC
Q 009003 346 VLDEADRMI-ENGH---------------FRELQSIIDMLPM 371 (547)
Q Consensus 346 ViDEah~ll-~~~~---------------~~~l~~i~~~l~~ 371 (547)
||||||.|| +.+. +..+..++..|+.
T Consensus 207 IIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~ 248 (997)
T 2ipc_A 207 IIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLER 248 (997)
T ss_dssp EETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCC
T ss_pred EEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhh
Confidence 999999987 3322 4567788888874
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.87 E-value=2.4e-21 Score=207.81 Aligned_cols=284 Identities=16% Similarity=0.165 Sum_probs=175.1
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAA---HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l---~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.|+|+|.++++.++ ..+.++|++++||+|||+.++. ++..+... ....++|||||+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~--------------------~~~~~~LIv~P~ 95 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE--------------------NELTPSLVICPL 95 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT--------------------TCCSSEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc--------------------CCCCCEEEEccH
Confidence 79999999998764 3578999999999999998654 44433211 123479999995
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
.|+.||.+++.+++. ++++..++|+... ......+|+|+||+.|..... +....+++|||||||++
T Consensus 96 -~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 96 -SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp -TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGG
T ss_pred -HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCcccc
Confidence 699999999999865 4556666665421 122457999999999864331 33457899999999999
Q ss_pred hhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC--hhHHHHhhh---ccccccccc-
Q 009003 354 IENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS--ADFRKKLKH---GSLKSKQSV- 427 (547)
Q Consensus 354 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l~~---~~~~~~~~~- 427 (547)
... .......+..++ ..+.+++|||+... .++...+.. +.+.....+
T Consensus 162 kn~--~~~~~~~l~~l~-------------------------~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~ 214 (500)
T 1z63_A 162 KNP--QTKIFKAVKELK-------------------------SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFK 214 (500)
T ss_dssp SCT--TSHHHHHHHTSC-------------------------EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHH
T ss_pred CCH--hHHHHHHHHhhc-------------------------cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHH
Confidence 533 334455555553 35789999998532 122222211 111000000
Q ss_pred ---------CCcchHHHHHHHhcccCceeEEecccc-----ccccccceEEEEEc-------------------------
Q 009003 428 ---------NGLNSIETLSERAGMRANVAIVDLTNM-----CVLANKLEESFIEC------------------------- 468 (547)
Q Consensus 428 ---------~~~~~i~~l~~~~~~~~~~~~i~~~~~-----~~~~~~i~~~~~~~------------------------- 468 (547)
........+... +.+ .++..... ...+. .....+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~l~~~--l~~--~~lrr~k~~~~~~~~lp~-~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~ 289 (500)
T 1z63_A 215 SKFATPIKKGDNMAKEELKAI--ISP--FILRRTKYDKAIINDLPD-KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVT 289 (500)
T ss_dssp TTTHHHHHTTCHHHHHHHHHH--HTT--TEECCCTTCHHHHTTSCS-EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC
T ss_pred HHhccccccccHHHHHHHHHH--Hhh--HeeeecccccchhhcCCC-CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 000000011000 000 00100000 00000 00111111
Q ss_pred --------------------------------cccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHc-CCce
Q 009003 469 --------------------------------KEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKIL-GIDV 513 (547)
Q Consensus 469 --------------------------------~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~-g~~v 513 (547)
....|...+..++... .+.++||||+++..+..|+..|... |+.+
T Consensus 290 ~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~ 369 (500)
T 1z63_A 290 GIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEV 369 (500)
T ss_dssp THHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCC
T ss_pred cccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCe
Confidence 1234555566666543 5779999999999999999999885 9999
Q ss_pred EEecCCcCHHHHHHHHHHHHhhh-h-----cCCCCCCCCC
Q 009003 514 WTLHAQMQQRARLKLFSQMITWI-R-----KRPKGDRGKD 547 (547)
Q Consensus 514 ~~lhg~m~~~eR~~il~~F~~~~-~-----k~~~g~~~~~ 547 (547)
..+||+|+..+|.+++++|+++. . ....|++|.|
T Consensus 370 ~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 370 PFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp CEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 99999999999999999999983 2 2356777764
No 71
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=193.49 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=124.1
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCC
Q 009003 183 HPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPK 262 (547)
Q Consensus 183 ~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 262 (547)
++.+...+.....-.++++|.++++.+. .|++++++||||||||.++.+++++.+.... ..
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~-~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~~ 107 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAIS-QNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------RA 107 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------CG
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------CC
Confidence 4444444443334457899999999997 6999999999999999999999887764321 12
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhc-CCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCC
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAK-GINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHT 341 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~ 341 (547)
.++++|+++||++|+.|+++.+..... .++..+..-.... ......+++|+||||++|++++.. .+++
T Consensus 108 ~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~ 176 (235)
T 3llm_A 108 AECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA------GIRG 176 (235)
T ss_dssp GGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH------CCTT
T ss_pred CceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh------hhcC
Confidence 346899999999999999988875432 3333333221110 001124588999999999999864 3889
Q ss_pred ccEEEEeccchh-hhcCCh-HHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC
Q 009003 342 LSFFVLDEADRM-IENGHF-RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL 408 (547)
Q Consensus 342 l~~lViDEah~l-l~~~~~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 408 (547)
+++|||||||++ +++++. ..+..++...+ .+|+++||||++.
T Consensus 177 ~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-------------------------~~~~il~SAT~~~ 220 (235)
T 3llm_A 177 ISHVIVDEIHERDINTDFLLVVLRDVVQAYP-------------------------EVRIVLMSATIDT 220 (235)
T ss_dssp CCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-------------------------TSEEEEEECSSCC
T ss_pred CcEEEEECCccCCcchHHHHHHHHHHHhhCC-------------------------CCeEEEEecCCCH
Confidence 999999999996 667766 46666666543 5799999999984
No 72
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=1.1e-21 Score=224.85 Aligned_cols=301 Identities=18% Similarity=0.137 Sum_probs=179.5
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 197 EPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
.|+|+|..++..++.. +..+|++++||+|||+.++..+...+.. ....++|||||+ .
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------g~~~rvLIVvP~-s 210 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------------------GAAERVLIIVPE-T 210 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------SSCCCEEEECCT-T
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------------CCCCeEEEEeCH-H
Confidence 7999999999888743 4588999999999999987766655421 112369999999 9
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHH--HhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQER--LLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 276 La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~--~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
|+.||..++.... ++.+..+.++........ ......+|+|+|++.|..... ....+....+++|||||||++
T Consensus 211 Ll~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~--~~~~l~~~~~dlVIvDEAH~~ 285 (968)
T 3dmq_A 211 LQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQ--RLEHLCEAEWDLLVVDEAHHL 285 (968)
T ss_dssp THHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTT--TTHHHHTSCCCEEEECCSSCC
T ss_pred HHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHH--HHHHhhhcCCCEEEehhhHhh
Confidence 9999999997653 566655544322111111 111357999999998853211 111234567899999999999
Q ss_pred hhcCCh-HHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCC--ChhHHHHhhhcccccccccC--
Q 009003 354 IENGHF-RELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIAL--SADFRKKLKHGSLKSKQSVN-- 428 (547)
Q Consensus 354 l~~~~~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~--~~~~~~~l~~~~~~~~~~~~-- 428 (547)
...+.. .....++..+.. ...+++++|||+.. ..++...+............
T Consensus 286 kn~~~~~s~~~~~l~~L~~-----------------------~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f 342 (968)
T 3dmq_A 286 VWSEDAPSREYQAIEQLAE-----------------------HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQF 342 (968)
T ss_dssp CCBTTBCCHHHHHHHHHHT-----------------------TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHH
T ss_pred cCCCCcchHHHHHHHHHhh-----------------------cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHH
Confidence 643321 111222222210 23468999999742 12222222111100000000
Q ss_pred -----------------------------------------------------CcchHHHHHHHhccc--CceeEEeccc
Q 009003 429 -----------------------------------------------------GLNSIETLSERAGMR--ANVAIVDLTN 453 (547)
Q Consensus 429 -----------------------------------------------------~~~~i~~l~~~~~~~--~~~~~i~~~~ 453 (547)
.......+....... ....++....
T Consensus 343 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r 422 (968)
T 3dmq_A 343 VEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTR 422 (968)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCT
T ss_pred HHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhh
Confidence 000000011100000 0000000000
Q ss_pred c---ccccccceEEE---------------------------------------------EEccccchHHHHHHHHHhcC
Q 009003 454 M---CVLANKLEESF---------------------------------------------IECKEEDKDAYLYYILSVHG 485 (547)
Q Consensus 454 ~---~~~~~~i~~~~---------------------------------------------~~~~~~~k~~~l~~ll~~~~ 485 (547)
. ......+.... ..+....|...|..++....
T Consensus 423 ~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~ 502 (968)
T 3dmq_A 423 NGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHR 502 (968)
T ss_dssp TTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTS
T ss_pred hhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCC
Confidence 0 00000000001 12234457888999998888
Q ss_pred CCcEEEEeCChHHHHHHHHHHHH-cCCceEEecCCcCHHHHHHHHHHHHhhh--h----cCCCCCCCCC
Q 009003 486 QGRTIVFCTSIAALRHISSLLKI-LGIDVWTLHAQMQQRARLKLFSQMITWI--R----KRPKGDRGKD 547 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~-~g~~v~~lhg~m~~~eR~~il~~F~~~~--~----k~~~g~~~~~ 547 (547)
++++||||+++..++.|+..|.. .|+++..+||+|++.+|.++++.|+++. . --..+.+|.|
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlD 571 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRN 571 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSC
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCC
Confidence 89999999999999999999995 6999999999999999999999999986 2 2455666664
No 73
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=7.3e-22 Score=195.77 Aligned_cols=154 Identities=23% Similarity=0.182 Sum_probs=121.5
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+++|.++++.++. +++.++++|||+|||+++++++...+.. ...++|||+||++|
T Consensus 113 ~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~~lil~Pt~~L 169 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTAL 169 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH----------------------CSSEEEEECSSHHH
T ss_pred CccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHc----------------------CCCeEEEEECCHHH
Confidence 799999999999884 6788999999999999998887765521 12479999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhc
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 356 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~ 356 (547)
+.|+++++..+....+..+..++++..... ......+|+|+||+.+.... ...+..+++|||||||++..
T Consensus 170 ~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp HHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc-
Confidence 999999999997766778888887765432 22356899999999875321 23467889999999999963
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh
Q 009003 357 GHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA 410 (547)
Q Consensus 357 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 410 (547)
..+..++..+. ...++++||||+++..
T Consensus 240 ---~~~~~il~~~~------------------------~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 240 ---KSISSIISGLN------------------------NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp ---HHHHHHTTTCT------------------------TCCEEEEECSSCCTTS
T ss_pred ---ccHHHHHHHhh------------------------cCCeEEEEeCCCCCcc
Confidence 36666766664 4579999999998544
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.85 E-value=7.9e-21 Score=216.50 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=116.0
Q ss_pred CCcHHHHHHHHHHHhc-------------CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCC
Q 009003 197 EPTPIQKACIPAAAHQ-------------GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKG 263 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~-------------~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (547)
.|+|+|..|++.++.. +++++++++||||||+++ ++++..+.. ...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--------------------~~~ 329 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--------------------LDF 329 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--------------------CTT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--------------------cCC
Confidence 5999999999998741 468999999999999997 666654311 122
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc-CCCcEEEeChHHHHHHHhcCCCCcccCCCc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK-ARPEVVVGTPGRLWELMSGGEKHLVELHTL 342 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l 342 (547)
..++|||||+++|+.|+.+.+..++... +.++.+.......+. ...+|+|+||++|..++.... ....+..+
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~~~~~~ 402 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLPVYNQQ 402 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCGGGGSC
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chhccccc
Confidence 3589999999999999999999886431 234444445555553 578999999999998875431 11234577
Q ss_pred cEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 343 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 343 ~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
.+|||||||++... .....|+..++ ..++++||||+...
T Consensus 403 ~lvIiDEAHrs~~~---~~~~~I~~~~p-------------------------~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 403 VVFIFDECHRSQFG---EAQKNLKKKFK-------------------------RYYQFGFTGTPIFP 441 (1038)
T ss_dssp EEEEEESCCTTHHH---HHHHHHHHHCS-------------------------SEEEEEEESSCCCS
T ss_pred cEEEEEccchhcch---HHHHHHHHhCC-------------------------cccEEEEeCCcccc
Confidence 89999999998632 33556667765 46999999998754
No 75
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=3.5e-19 Score=196.09 Aligned_cols=301 Identities=16% Similarity=0.187 Sum_probs=179.4
Q ss_pred CCcHHHHHHHHHHH--------hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEE
Q 009003 197 EPTPIQKACIPAAA--------HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRAL 268 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l--------~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (547)
.++|+|.+++..++ .++..+|++.+||+|||+..+..+...+... ........++|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------~~~~p~~~~~L 118 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------PDCKPEIDKVI 118 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC----------------TTSSCSCSCEE
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC----------------ccccCCCCcEE
Confidence 68999999998875 3466799999999999988766555443110 00111234699
Q ss_pred EEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHH---HHhc-----CCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 269 IITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQE---RLLK-----ARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 269 il~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~---~~~~-----~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
||+|+ +|+.||.+++.+++.. .+.++.++++....... ..+. ...+|+|+|++.+..... .+...
T Consensus 119 iV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-----~l~~~ 191 (644)
T 1z3i_X 119 VVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-----VLHKG 191 (644)
T ss_dssp EEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-----TTTTS
T ss_pred EEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-----HhhcC
Confidence 99997 8999999999998765 56677777765432211 1111 147899999999876542 13345
Q ss_pred CccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCCh--hHH---HH
Q 009003 341 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALSA--DFR---KK 415 (547)
Q Consensus 341 ~l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~--~~~---~~ 415 (547)
.+++||+||||++- +........+..++ ....+++|||+-... ++. ..
T Consensus 192 ~~~~vI~DEaH~ik--n~~~~~~~al~~l~-------------------------~~~rl~LTgTPiqN~l~El~sll~f 244 (644)
T 1z3i_X 192 KVGLVICDEGHRLK--NSDNQTYLALNSMN-------------------------AQRRVLISGTPIQNDLLEYFSLVHF 244 (644)
T ss_dssp CCCEEEETTGGGCC--TTCHHHHHHHHHHC-------------------------CSEEEEECSSCSGGGGGGCHHHHHH
T ss_pred CccEEEEECceecC--ChhhHHHHHHHhcc-------------------------cCcEEEEecCcccCCHHHHHHHHHh
Confidence 77899999999984 33334444444443 346799999974221 111 11
Q ss_pred hhhccccccccc--------------CC-----------cchHHHHHHHhcccCc----------e----eEEecccccc
Q 009003 416 LKHGSLKSKQSV--------------NG-----------LNSIETLSERAGMRAN----------V----AIVDLTNMCV 456 (547)
Q Consensus 416 l~~~~~~~~~~~--------------~~-----------~~~i~~l~~~~~~~~~----------~----~~i~~~~~~~ 456 (547)
+..+.+.....+ .. ...+..+...+.++.. . ..+.+...+.
T Consensus 245 l~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~ 324 (644)
T 1z3i_X 245 VNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQK 324 (644)
T ss_dssp HHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHH
T ss_pred hCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHH
Confidence 111100000000 00 0001111111111110 0 0000000000
Q ss_pred -----------------------------------------------------------ccccceEEEEEccccchHHHH
Q 009003 457 -----------------------------------------------------------LANKLEESFIECKEEDKDAYL 477 (547)
Q Consensus 457 -----------------------------------------------------------~~~~i~~~~~~~~~~~k~~~l 477 (547)
.+..............|...+
T Consensus 325 ~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l 404 (644)
T 1z3i_X 325 ELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 404 (644)
T ss_dssp HHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHH
Confidence 000000000000112344455
Q ss_pred HHHHHh---cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh-------cCCCCCCCCC
Q 009003 478 YYILSV---HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR-------KRPKGDRGKD 547 (547)
Q Consensus 478 ~~ll~~---~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~-------k~~~g~~~~~ 547 (547)
..++.. .+..++||||+++..+..|...|...|+.+..+||+|+..+|.+++++|+++.. ....|+.|.|
T Consensus 405 ~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 405 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred HHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 555543 357899999999999999999999999999999999999999999999998743 3456777764
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.4e-19 Score=202.28 Aligned_cols=295 Identities=16% Similarity=0.140 Sum_probs=179.8
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAAA---HQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l---~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.++|+|.+++..++ ..+.++|++.+||+|||+..+..+...+... .....+|||||
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--------------------~~~~~~LIV~P- 294 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--------------------RQNGPHIIVVP- 294 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------SCCSCEEEECC-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------CCCCCEEEEEC-
Confidence 68899999998664 3688999999999999988655544433221 12245899999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH------------hcCCCcEEEeChHHHHHHHhcCCCCcccCCC
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL------------LKARPEVVVGTPGRLWELMSGGEKHLVELHT 341 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~------------~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~ 341 (547)
..|+.||.++|.+++. ++++.+++|+......... ....++|+|+|++.+...... +....
T Consensus 295 ~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~ 367 (800)
T 3mwy_W 295 LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIK 367 (800)
T ss_dssp TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSE
T ss_pred chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCC
Confidence 6889999999999864 4566666666544332221 223578999999999764321 22346
Q ss_pred ccEEEEeccchhhhcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC--CChhHHHHhhhc
Q 009003 342 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA--LSADFRKKLKHG 419 (547)
Q Consensus 342 l~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~--~~~~~~~~l~~~ 419 (547)
+.+|||||||++- +....+...+..++ ....+++|||+- ...++...+...
T Consensus 368 w~~vIvDEaH~lk--n~~s~~~~~l~~l~-------------------------~~~rl~LTgTPiqN~l~el~~ll~fL 420 (800)
T 3mwy_W 368 WQFMAVDEAHRLK--NAESSLYESLNSFK-------------------------VANRMLITGTPLQNNIKELAALVNFL 420 (800)
T ss_dssp EEEEEETTGGGGC--CSSSHHHHHHTTSE-------------------------EEEEEEECSCCCSSCSHHHHHHHHHH
T ss_pred cceeehhhhhhhc--CchhHHHHHHHHhh-------------------------hccEEEeeCCcCCCCHHHHHHHHHHh
Confidence 7899999999994 34445555555543 346789999974 223443333321
Q ss_pred cccccc---ccC--Cc-chHHHHHHHhcccCceeEEecccccc---ccccceEEEEEc----------------------
Q 009003 420 SLKSKQ---SVN--GL-NSIETLSERAGMRANVAIVDLTNMCV---LANKLEESFIEC---------------------- 468 (547)
Q Consensus 420 ~~~~~~---~~~--~~-~~i~~l~~~~~~~~~~~~i~~~~~~~---~~~~i~~~~~~~---------------------- 468 (547)
...... ... .. .........+...-.+.++....... .+. .....+.|
T Consensus 421 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~-k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~ 499 (800)
T 3mwy_W 421 MPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPS-KTERILRVELSDVQTEYYKNILTKNYSALT 499 (800)
T ss_dssp CSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCC-EEEEEEEECCCHHHHHHHHHHHHHCCC---
T ss_pred CccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 111100 000 00 00000000000000000110000000 000 00000000
Q ss_pred -----------------------------------------------------cccchHHHHHHHHHhc--CCCcEEEEe
Q 009003 469 -----------------------------------------------------KEEDKDAYLYYILSVH--GQGRTIVFC 493 (547)
Q Consensus 469 -----------------------------------------------------~~~~k~~~l~~ll~~~--~~~k~LVF~ 493 (547)
....|...|..++... .+.++||||
T Consensus 500 ~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFs 579 (800)
T 3mwy_W 500 AGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFS 579 (800)
T ss_dssp -------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEE
T ss_pred hccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEe
Confidence 1233556667777654 467999999
Q ss_pred CChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh-------cCCCCCCCCC
Q 009003 494 TSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR-------KRPKGDRGKD 547 (547)
Q Consensus 494 ~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~-------k~~~g~~~~~ 547 (547)
+....+..|...|...|+.+..+||+|+..+|.+++++|+++.. ....|+.|.+
T Consensus 580 q~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 580 QMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp SCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred chHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 99999999999999999999999999999999999999997533 2445666654
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.79 E-value=2.3e-17 Score=176.65 Aligned_cols=299 Identities=19% Similarity=0.183 Sum_probs=188.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 009003 193 LQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITP 272 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 272 (547)
+|. +|+++|......+ +.|+ |+...||+|||+++.+|++-..+ .|..|.||+|
T Consensus 72 lg~-r~~dvQligg~~L-~~G~--iaEM~TGEGKTLva~lp~~lnAL-----------------------~G~~vhVvT~ 124 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIAL-HEGK--VAEMKTGEGKTLAATMPIYLNAL-----------------------IGKGVHLVTV 124 (822)
T ss_dssp TSC-CCCHHHHHHHHHH-HTTC--EEECCTTSCHHHHTHHHHHHHHT-----------------------TSSCEEEEES
T ss_pred hCC-CCcHHHHHHHHHH-hCCC--hhhccCCCCccHHHHHHHHHHHh-----------------------cCCceEEEec
Confidence 566 7999999988665 5676 89999999999999999875432 2456999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCcEEEEEEcC--------------------------------------------------C
Q 009003 273 TRELALQVTDHLKGVAKGINVRVVPIVGG--------------------------------------------------M 302 (547)
Q Consensus 273 tr~La~qv~~~l~~~~~~~~~~v~~~~g~--------------------------------------------------~ 302 (547)
|+.||.|-++.+..+...+|+.+++++.. .
T Consensus 125 ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 204 (822)
T 3jux_A 125 NDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVEL 204 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEEC
T ss_pred cHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccC
Confidence 99999999999999999999999999872 1
Q ss_pred CHHHHHHHhcCCCcEEEeChHHH-HHHHhcC---CCCcccCCCccEEEEeccchhh-hc--------C----C---hHHH
Q 009003 303 STEKQERLLKARPEVVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLDEADRMI-EN--------G----H---FREL 362 (547)
Q Consensus 303 ~~~~~~~~~~~~~dIlv~TP~~l-~~~l~~~---~~~~~~l~~l~~lViDEah~ll-~~--------~----~---~~~l 362 (547)
+....... -.+||..+|..-| .+.|... .....-...+.+.||||+|.+| |. | . +..+
T Consensus 205 ~~~err~a--Y~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~ 282 (822)
T 3jux_A 205 KEITRKEA--YLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRF 282 (822)
T ss_dssp CBCCHHHH--HHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHH
T ss_pred CHHHHHHH--hcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHH
Confidence 11111111 1379999999887 4444321 1111235778999999999975 21 1 0 2222
Q ss_pred HHHHHhCCCCCC-----CC--------------------CCCCcccc---------------------------------
Q 009003 363 QSIIDMLPMTNG-----SN--------------------KGQSEQTQ--------------------------------- 384 (547)
Q Consensus 363 ~~i~~~l~~~~~-----~~--------------------~~~~~~~~--------------------------------- 384 (547)
..+...|..... .. .-.+....
T Consensus 283 ~~~v~~l~~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVD 362 (822)
T 3jux_A 283 AQIAKKFVKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVD 362 (822)
T ss_dssp HHHTTSSCBTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECS
T ss_pred HHHHHhcCcCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEE
Confidence 333222221000 00 00000000
Q ss_pred -----------------------------------cccccccccCCCcEEEEEeccCCCChhHHHHhhhcccccccccCC
Q 009003 385 -----------------------------------NCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKSKQSVNG 429 (547)
Q Consensus 385 -----------------------------------~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~ 429 (547)
...+.-+..+.-.++.+||+|+..
T Consensus 363 e~TGR~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~t--------------------- 421 (822)
T 3jux_A 363 EFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKT--------------------- 421 (822)
T ss_dssp SSSCSCCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGG---------------------
T ss_pred CCCCcCCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCch---------------------
Confidence 001112223344568888888762
Q ss_pred cchHHHHHHHhcccCceeEEeccccccccccceEEEEEccccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHH
Q 009003 430 LNSIETLSERAGMRANVAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLK 507 (547)
Q Consensus 430 ~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~ 507 (547)
....+...+++ . ++.++........-.+..+......|...+...+... .+.++||||+|++.++.|+..|.
T Consensus 422 --e~~Ef~~iY~l--~--vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~ 495 (822)
T 3jux_A 422 --EESEFVQVYGM--E--VVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLK 495 (822)
T ss_dssp --GHHHHHHHSCC--C--EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHH
T ss_pred --HHHHHHHHhCC--e--EEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHH
Confidence 22333333332 2 2333222111111122345566678888888887643 46799999999999999999999
Q ss_pred HcCCceEEecCCcCHHHHHHHHHHHHhhh--hcCCCCCCCCC
Q 009003 508 ILGIDVWTLHAQMQQRARLKLFSQMITWI--RKRPKGDRGKD 547 (547)
Q Consensus 508 ~~g~~v~~lhg~m~~~eR~~il~~F~~~~--~k~~~g~~~~~ 547 (547)
..|+++.++||++.+.+|..+..+|+.|. .---..+||.|
T Consensus 496 ~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAgRGtD 537 (822)
T 3jux_A 496 KKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGTD 537 (822)
T ss_dssp TTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTCC
T ss_pred HCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhhCCcC
Confidence 99999999999977777776777776653 12233455654
No 78
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=7.5e-19 Score=169.31 Aligned_cols=139 Identities=20% Similarity=0.119 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..|+++|.+++..++ .++++++++|||+|||++++.++... +.++||++||++
T Consensus 92 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~--------------------------~~~~liv~P~~~ 144 (237)
T 2fz4_A 92 ISLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLA 144 (237)
T ss_dssp CCCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS--------------------------CSCEEEEESSHH
T ss_pred CCcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeCCHH
Confidence 389999999999987 57789999999999999988776532 247999999999
Q ss_pred HHHHHHHHHHHhhcCCCcE-EEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 276 LALQVTDHLKGVAKGINVR-VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 276 La~qv~~~l~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
|+.|+.+.+..+ ++. +..+.|+.. ...+|+|+||+.+...+.. ....+++|||||||++.
T Consensus 145 L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 145 LAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLP 205 (237)
T ss_dssp HHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCC
T ss_pred HHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCC
Confidence 999999999884 677 777777653 3578999999998765531 23568999999999997
Q ss_pred hcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCCCC
Q 009003 355 ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIALS 409 (547)
Q Consensus 355 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 409 (547)
...+ ..++..++ ..++|+||||+.+.
T Consensus 206 ~~~~----~~i~~~~~-------------------------~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 206 AESY----VQIAQMSI-------------------------APFRLGLTATFERE 231 (237)
T ss_dssp TTTH----HHHHHTCC-------------------------CSEEEEEEESCC--
T ss_pred ChHH----HHHHHhcc-------------------------CCEEEEEecCCCCC
Confidence 5432 34555543 46889999998743
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.63 E-value=8.6e-16 Score=166.17 Aligned_cols=133 Identities=18% Similarity=0.045 Sum_probs=102.7
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEE
Q 009003 194 QFKEPTPIQKACIPAA---AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALII 270 (547)
Q Consensus 194 ~~~~~~~iQ~~~i~~~---l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 270 (547)
|| .|+|.|.+++..+ +..|+++++.||||+|||++|++|++.. ++++||+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------------------~~~v~i~ 53 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------------------KPKVLFV 53 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------------------CSEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------------------CCeEEEE
Confidence 34 6899999977643 3478999999999999999999999972 3689999
Q ss_pred ccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCH---------------------------------HHHH---------
Q 009003 271 TPTRELALQVTDHLKGVAKGINVRVVPIVGGMST---------------------------------EKQE--------- 308 (547)
Q Consensus 271 ~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~---------------------------------~~~~--------- 308 (547)
+||++|+.|+.+++..+....++++..+.|..+. ....
T Consensus 54 ~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~ 133 (551)
T 3crv_A 54 VRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQ 133 (551)
T ss_dssp ESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCc
Confidence 9999999999999999887778888887763221 1111
Q ss_pred ---------HHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 309 ---------RLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 309 ---------~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
+.....++|||+|++.|++.+.... ...+....+|||||||.|.+
T Consensus 134 ~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 134 DKFCPYYSLLNSLYKADVIALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG
T ss_pred CCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH
Confidence 2223468999999999987754322 11224678999999999987
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.56 E-value=6.5e-13 Score=146.21 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=56.7
Q ss_pred chHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 472 DKDAYLYYILSV--HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 472 ~k~~~l~~ll~~--~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
.+...+...+.. ..+.++||||+|+..|+.|+..|...|+.+..+||+|++.+|.++++.|++|....
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~V 492 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDC 492 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSE
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceE
Confidence 344444444432 25679999999999999999999999999999999999999999999999986553
No 81
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.53 E-value=7.8e-15 Score=158.12 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=88.1
Q ss_pred cCCCCCcHHHHHHHHHH---HhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEE
Q 009003 193 LQFKEPTPIQKACIPAA---AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALI 269 (547)
Q Consensus 193 ~~~~~~~~iQ~~~i~~~---l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 269 (547)
.|| .|+|+|.+++..+ +..++++++.+|||+|||++|++|++.. ++++||
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------------------~~~~~~ 56 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------------------KKKVLI 56 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------------------TCEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------------------CCcEEE
Confidence 467 8999999987543 3478999999999999999999998753 368999
Q ss_pred EccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHH--------------------------------------------
Q 009003 270 ITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTE-------------------------------------------- 305 (547)
Q Consensus 270 l~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~-------------------------------------------- 305 (547)
++||++|+.|+.+++..+ ++++..+.|.....
T Consensus 57 ~~~t~~l~~q~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~ 132 (540)
T 2vl7_A 57 FTRTHSQLDSIYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDY 132 (540)
T ss_dssp EESCHHHHHHHHHHHGGG----TCCEEEC---------------------------------------------------
T ss_pred EcCCHHHHHHHHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCC
Confidence 999999999999988875 44444444322100
Q ss_pred ---HHHHHhcCCCcEEEeChHHHHHHHhcCCCC----cccCCCccEEEEeccchhhh
Q 009003 306 ---KQERLLKARPEVVVGTPGRLWELMSGGEKH----LVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 306 ---~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~----~~~l~~l~~lViDEah~ll~ 355 (547)
...+.....++|||||+..|+..+...... .-.+....++||||||.|.+
T Consensus 133 Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 133 CPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp ------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred ChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 000011235799999999998654321100 01246678999999999943
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.44 E-value=1.6e-11 Score=135.07 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=56.1
Q ss_pred hHHHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 473 KDAYLYYILSV--HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 473 k~~~l~~ll~~--~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
+...+...+.. ..++++||||+|+..|+.|+..|...|+.+..+||+|++.+|.++++.|++|....
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~V 498 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDV 498 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEE
Confidence 34444444432 24679999999999999999999999999999999999999999999999986553
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.34 E-value=2.5e-12 Score=140.33 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHH---HhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccC
Q 009003 197 EPTPIQKACIPAA---AHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPT 273 (547)
Q Consensus 197 ~~~~iQ~~~i~~~---l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 273 (547)
.|++.|.+.+..+ +.+|++++++||||+|||++|++|++.++... +.+++|++||
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------------------~~kvli~t~T 60 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------------------KLKVLYLVRT 60 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------------------TCEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------------------CCeEEEECCC
Confidence 6899999887643 34799999999999999999999999987432 3589999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEcCC
Q 009003 274 RELALQVTDHLKGVAKGINVRVVPIVGGM 302 (547)
Q Consensus 274 r~La~qv~~~l~~~~~~~~~~v~~~~g~~ 302 (547)
++|+.|+.+++..+....++++..+.|+.
T Consensus 61 ~~l~~Qi~~el~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 61 NSQEEQVIKELRSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEECCCHH
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEEECCC
Confidence 99999999999998876677777666543
No 84
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.07 E-value=8.5e-10 Score=100.29 Aligned_cols=89 Identities=22% Similarity=0.383 Sum_probs=79.2
Q ss_pred ccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 459 NKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 459 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
..+.|+++.+....|...|..++.....+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|+++..+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 46889999999999999999999988889999999999999999999999999999999999999999999999987643
Q ss_pred ----CCCCCCCCC
Q 009003 539 ----RPKGDRGKD 547 (547)
Q Consensus 539 ----~~~g~~~~~ 547 (547)
-..+.+|.|
T Consensus 84 vLvaT~~~~~Gld 96 (172)
T 1t5i_A 84 ILVATNLFGRGMD 96 (172)
T ss_dssp EEEESSCCSTTCC
T ss_pred EEEECCchhcCcc
Confidence 334555654
No 85
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.04 E-value=1.1e-09 Score=98.62 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=75.6
Q ss_pred cccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhh
Q 009003 458 ANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIR 537 (547)
Q Consensus 458 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~ 537 (547)
..++.|+++.+....|...|..++.....+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|+++..
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 44588999999999999999999998888999999999999999999999999999999999999999999999999864
Q ss_pred c
Q 009003 538 K 538 (547)
Q Consensus 538 k 538 (547)
+
T Consensus 87 ~ 87 (163)
T 2hjv_A 87 R 87 (163)
T ss_dssp S
T ss_pred e
Confidence 3
No 86
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=1.2e-09 Score=99.54 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=79.2
Q ss_pred cccceEEEEEccccc-hHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhh
Q 009003 458 ANKLEESFIECKEED-KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWI 536 (547)
Q Consensus 458 ~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~ 536 (547)
..++.|+|+.++... |...|..++...+.+++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|.
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456899999998765 9999999999888899999999999999999999999999999999999999999999999986
Q ss_pred hc----CCCCCCCCC
Q 009003 537 RK----RPKGDRGKD 547 (547)
Q Consensus 537 ~k----~~~g~~~~~ 547 (547)
.+ -..+.+|.|
T Consensus 85 ~~vLvaT~~~~~Gid 99 (175)
T 2rb4_A 85 EKVLITTNVCARGID 99 (175)
T ss_dssp CSEEEECCSCCTTTC
T ss_pred CeEEEEecchhcCCC
Confidence 44 344556654
No 87
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.97 E-value=2.5e-09 Score=96.45 Aligned_cols=79 Identities=13% Similarity=0.276 Sum_probs=73.1
Q ss_pred cceEEEEEccccc-hHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 460 KLEESFIECKEED-KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 460 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++.|+|+.+.... |...|..++...+.+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|+++..+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 4788999998776 999999999988889999999999999999999999999999999999999999999999988654
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.91 E-value=3.3e-09 Score=97.51 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=67.7
Q ss_pred ccccceEEEEEccccchHHHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 457 LANKLEESFIECKEEDKDAYLYYILSVH-GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 457 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
...++.|.++.+....|...|..++... +.+++||||+++..+..|+..|...|+.+..+||+|++.+|..+++.|+++
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4557899999999999999999999887 578999999999999999999999999999999999999999999999998
Q ss_pred hhc
Q 009003 536 IRK 538 (547)
Q Consensus 536 ~~k 538 (547)
..+
T Consensus 96 ~~~ 98 (185)
T 2jgn_A 96 KSP 98 (185)
T ss_dssp SSS
T ss_pred CCe
Confidence 654
No 89
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.89 E-value=5.4e-09 Score=96.63 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=73.1
Q ss_pred eeEEeccccccccccceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHH
Q 009003 446 VAIVDLTNMCVLANKLEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRAR 525 (547)
Q Consensus 446 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR 525 (547)
+..+.+........++.|.++.+....|...|..++... .+++||||+++..++.++..|...|+.+..+||+|++.+|
T Consensus 15 p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R 93 (191)
T 2p6n_A 15 TENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEER 93 (191)
T ss_dssp -------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHH
T ss_pred CEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 333444444445567999999999999999999999865 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 009003 526 LKLFSQMITWIRK 538 (547)
Q Consensus 526 ~~il~~F~~~~~k 538 (547)
.++++.|+++..+
T Consensus 94 ~~~l~~F~~g~~~ 106 (191)
T 2p6n_A 94 TKAIEAFREGKKD 106 (191)
T ss_dssp HHHHHHHHHTSCS
T ss_pred HHHHHHHhcCCCE
Confidence 9999999998644
No 90
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.89 E-value=2.9e-09 Score=116.00 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHhcCCcEEEEccCCChhh--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 199 TPIQKACIPAAAHQGKDVIGAAETGSGKT--LAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 199 ~~iQ~~~i~~~l~~~~dvli~a~TGsGKT--~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
+++|+.+++.++ .++.+++.|++||||| ++++++++..+ ....+.++++++||..+
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~---------------------~~~~~~~vll~APTg~A 208 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQM---------------------ADGERCRIRLAAPTGKA 208 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHT---------------------CSSCCCCEEEEBSSHHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHh---------------------hhcCCCeEEEEeCChhH
Confidence 789999999998 6899999999999999 55777766542 11235689999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCC-cEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 277 ALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARP-EVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
|.++.+.+...+..+++..... .+... . .... .++-.+|+... +.... .....+++||||||+ |++
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~~--~~~~~---~~~l~~d~lIIDEAs-ml~ 275 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQR--LRHHA---GNPLHLDVLVVDEAS-MID 275 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CT---TSCCSCSEEEECSGG-GCB
T ss_pred HHHHHHHHHHHHhcCCCCHHHH-hccch--h----hhhhHhhhccCCCchH--HHhcc---CCCCCCCEEEEechh-hCC
Confidence 9999998887655444321100 00000 0 0001 12222333211 11111 112378999999999 543
Q ss_pred cCChHHHHHHHHhCC
Q 009003 356 NGHFRELQSIIDMLP 370 (547)
Q Consensus 356 ~~~~~~l~~i~~~l~ 370 (547)
...+..|+..++
T Consensus 276 ---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 276 ---LPMMSRLIDALP 287 (608)
T ss_dssp ---HHHHHHHHHTCC
T ss_pred ---HHHHHHHHHhCC
Confidence 466778888876
No 91
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.84 E-value=1.1e-08 Score=96.12 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=73.0
Q ss_pred ceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 461 i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+.+.++.+....|...|..++....++++||||+++..++.++..|...|+.+..+||+|++.+|.++++.|++|..+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 557788888999999999999988899999999999999999999999999999999999999999999999998654
No 92
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.82 E-value=1.5e-08 Score=100.28 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=74.2
Q ss_pred ceEEEEEccccchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 461 LEESFIECKEEDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 461 i~~~~~~~~~~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
+.|+++.+....|...|..++....++++||||+|+..++.|+..|...|+.+..+||+|++.+|..+++.|++|..+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 678999999999999999999988899999999999999999999999999999999999999999999999998754
No 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.12 E-value=2.4e-09 Score=97.10 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=72.7
Q ss_pred cceEEEEEccc-cchHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhhhhc
Q 009003 460 KLEESFIECKE-EDKDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITWIRK 538 (547)
Q Consensus 460 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~~~k 538 (547)
++.|.++.+.. ..|...|..++.....+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|..+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 46788888887 88999999999887788999999999999999999999999999999999999999999999998654
No 94
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.21 E-value=9.3e-05 Score=77.70 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=50.3
Q ss_pred HHcCCCCCcHHHHHHHHHHHhc----CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeE
Q 009003 191 YRLQFKEPTPIQKACIPAAAHQ----GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLR 266 (547)
Q Consensus 191 ~~~~~~~~~~iQ~~~i~~~l~~----~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (547)
.-+.|..+++-|++++..++.. ...+++.|+.|||||.. +..++..+... ....
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~---------------------~~~~ 76 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIST---------------------GETG 76 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHT---------------------TCCC
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhc---------------------CCce
Confidence 3467889999999999876532 34899999999999954 23444444321 1136
Q ss_pred EEEEccCHHHHHHHHHHH
Q 009003 267 ALIITPTRELALQVTDHL 284 (547)
Q Consensus 267 ~lil~Ptr~La~qv~~~l 284 (547)
+++++||...|..+.+.+
T Consensus 77 il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 77 IILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEESSHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHhhh
Confidence 899999998887666544
No 95
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.08 E-value=7.6e-06 Score=79.66 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=68.4
Q ss_pred cccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHc-CCceEEecCCcCHHHHHHHHHHHHhh-hh-----cC
Q 009003 469 KEEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKIL-GIDVWTLHAQMQQRARLKLFSQMITW-IR-----KR 539 (547)
Q Consensus 469 ~~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~-g~~v~~lhg~m~~~eR~~il~~F~~~-~~-----k~ 539 (547)
....|...|..++... .+.++||||++...+..|...|... |+.+..+||++++.+|.+++++|+++ .. ..
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567888999988765 6789999999999999999999885 99999999999999999999999998 22 34
Q ss_pred CCCCCCCC
Q 009003 540 PKGDRGKD 547 (547)
Q Consensus 540 ~~g~~~~~ 547 (547)
..|++|.|
T Consensus 173 ~~~g~Gln 180 (271)
T 1z5z_A 173 KAGGFGIN 180 (271)
T ss_dssp CTTCCCCC
T ss_pred hhhcCCcC
Confidence 67888865
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.04 E-value=0.00055 Score=75.00 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+++-|.+++. +....++|.|+.|||||.+.+--+...+ .. .+..+-++|+|++|+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~-~~------------------~~~~~~~iL~ltft~~ 65 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLM-SV------------------ENCSPYSIMAVTFTNK 65 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHH-HT------------------SCCCGGGEEEEESSHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHH-Hh------------------CCCChhhEEEEeccHH
Confidence 468999999995 2467899999999999976443333332 11 1122347999999999
Q ss_pred HHHHHHHHHHHhhc
Q 009003 276 LALQVTDHLKGVAK 289 (547)
Q Consensus 276 La~qv~~~l~~~~~ 289 (547)
.|.++.+.+..+..
T Consensus 66 aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 66 AAAEMRHRIGQLMG 79 (647)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987753
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.02 E-value=1.8e-05 Score=85.32 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.+++.|..++..++ .+..+++.|+.|+|||... ..++..+.. .+.++++++||...
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----------------------~g~~Vl~~ApT~~A 244 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTT-KAVADLAES----------------------LGLEVGLCAPTGKA 244 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHH-HHHHHHHHh----------------------cCCeEEEecCcHHH
Confidence 68999999999987 6789999999999999542 223333211 13579999999998
Q ss_pred HHHHHHHH
Q 009003 277 ALQVTDHL 284 (547)
Q Consensus 277 a~qv~~~l 284 (547)
|.++.+.+
T Consensus 245 a~~L~e~~ 252 (574)
T 3e1s_A 245 ARRLGEVT 252 (574)
T ss_dssp HHHHHHHH
T ss_pred HHHhHhhh
Confidence 88776544
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.02 E-value=1e-05 Score=88.89 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.+.+-|.+|+..++....-.||.||+|||||.+.+- ++..+.. .+.++|+++||..-
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~----------------------~~~~ILv~a~TN~A 245 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK----------------------QGLKVLCCAPSNIA 245 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH----------------------TTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh----------------------CCCeEEEEcCchHH
Confidence 578999999999885444568999999999976433 3333322 13579999999999
Q ss_pred HHHHHHHHHHh
Q 009003 277 ALQVTDHLKGV 287 (547)
Q Consensus 277 a~qv~~~l~~~ 287 (547)
|.++.+.+...
T Consensus 246 vD~i~erL~~~ 256 (646)
T 4b3f_X 246 VDNLVERLALC 256 (646)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99998888655
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.01 E-value=3.3e-05 Score=84.36 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
+..+++.|..|+..++ ...-++|.||+|+|||.... .++..+.. ..+.++|+++||.
T Consensus 178 ~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~-~~i~~l~~---------------------~~~~~ilv~a~tn 234 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLAR---------------------QGNGPVLVCAPSN 234 (624)
T ss_dssp SCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHH-HHHHHHHT---------------------SSSCCEEEEESSH
T ss_pred cCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHH-HHHHHHHH---------------------cCCCeEEEEeCcH
Confidence 4578999999999887 56778999999999996633 33333321 1245899999999
Q ss_pred HHHHHHHHHHHHh
Q 009003 275 ELALQVTDHLKGV 287 (547)
Q Consensus 275 ~La~qv~~~l~~~ 287 (547)
..|.++.+.+...
T Consensus 235 ~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 235 IAVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888754
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=6.1e-05 Score=84.26 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
+..+++.|..|+..++ .+.-++|.||+|||||.+. ..++..+... .+.++|+++||.
T Consensus 358 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i-~~~i~~l~~~---------------------~~~~ILv~a~tn 414 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTS-ATIVYHLSKI---------------------HKDRILVCAPSN 414 (802)
T ss_dssp SCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHH-HHHHHHHHHH---------------------HCCCEEEEESSH
T ss_pred cccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHH-HHHHHHHHhC---------------------CCCeEEEEcCcH
Confidence 3467899999999987 4667899999999999663 3334444321 135799999999
Q ss_pred HHHHHHHHHHHHh
Q 009003 275 ELALQVTDHLKGV 287 (547)
Q Consensus 275 ~La~qv~~~l~~~ 287 (547)
..|.++.+.+...
T Consensus 415 ~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 415 VAVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.88 E-value=0.00013 Score=81.61 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=53.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCH
Q 009003 195 FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTR 274 (547)
Q Consensus 195 ~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr 274 (547)
...+++.|..|+..++ .+.-++|.||+|+|||.+. ..++..+.. ..+.++|+++||.
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti-~~~i~~l~~---------------------~~~~~ilv~a~tn 410 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTS-ATIVYHLAR---------------------QGNGPVLVCAPSN 410 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHH-HHHHHHHHT---------------------TCSSCEEEEESSH
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHH-HHHHHHHHH---------------------cCCCcEEEEcCcH
Confidence 3467899999999887 5677899999999999653 333443321 1245799999999
Q ss_pred HHHHHHHHHHHHh
Q 009003 275 ELALQVTDHLKGV 287 (547)
Q Consensus 275 ~La~qv~~~l~~~ 287 (547)
..|.++.+.+...
T Consensus 411 ~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 411 IAVDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888754
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.08 E-value=0.0021 Score=65.23 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=55.1
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+|+|...+..+. ..+-+++..+-+.|||.+.+..++..+.. ..+..+++++||+..
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------------------~~g~~v~~vA~t~~q 220 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHS---------------------SSSCEEEEEESSHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHh---------------------CCCCeEEEEeCCHHH
Confidence 78999999987664 45678999999999998765555443311 234689999999999
Q ss_pred HHHHHHHHHHhhcC
Q 009003 277 ALQVTDHLKGVAKG 290 (547)
Q Consensus 277 a~qv~~~l~~~~~~ 290 (547)
|..+++.+..+...
T Consensus 221 A~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 221 SAEVLDRTKQAIEL 234 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888877653
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.85 E-value=0.0055 Score=55.05 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|+.+++.||+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999954
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.80 E-value=0.0075 Score=65.22 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.|+|+|...+..+ ...+-+++..+-|+|||.+...-++..+.. .++..++++.||+..
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---------------------~~~~~i~~va~t~~q 220 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHHHT---------------------SSSCEEEEEESSHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHHHh---------------------CCCCeEEEEECCHHH
Confidence 6899999998776 356789999999999998765444443321 124589999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 009003 277 ALQVTDHLKGVAKGIN 292 (547)
Q Consensus 277 a~qv~~~l~~~~~~~~ 292 (547)
|..++..+..+....+
T Consensus 221 A~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 221 SAEVLDRTKQAIELLP 236 (592)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999998888776543
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.42 E-value=0.0062 Score=62.65 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=51.8
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCc
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINV 293 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~ 293 (547)
+-.++.|+.|+|||.... +.+ . .-+.+|++||++++..+.+.+... +.
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~-~-----------------------~~~~lVlTpT~~aa~~l~~kl~~~----~~ 209 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRV-N-----------------------FEEDLILVPGRQAAEMIRRRANAS----GI 209 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHC-C-----------------------TTTCEEEESCHHHHHHHHHHHTTT----SC
T ss_pred cEEEEEcCCCCCHHHHHH----HHh-c-----------------------cCCeEEEeCCHHHHHHHHHHhhhc----Cc
Confidence 345799999999995431 111 0 014699999999998888877533 10
Q ss_pred EEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchh
Q 009003 294 RVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 353 (547)
Q Consensus 294 ~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~l 353 (547)
.....+-|.|-+.++. +.. .......++||||||-.+
T Consensus 210 ------------------~~~~~~~V~T~dsfL~---~~~--~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 210 ------------------IVATKDNVRTVDSFLM---NYG--KGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ------------------CCCCTTTEEEHHHHHH---TTT--SSCCCCCSEEEEETGGGS
T ss_pred ------------------cccccceEEEeHHhhc---CCC--CCCCCcCCEEEEeCcccC
Confidence 0012234667666542 211 112234789999999744
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.0049 Score=57.66 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=52.5
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI 291 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~ 291 (547)
.|.-+++.|++|+|||.+.+- ++.++.. .+.+++|+.|...- + . ...++..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~-~~~r~~~----------------------~g~kVli~~~~~d~--r-~--~~~i~srl 62 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR-RLHRLEY----------------------ADVKYLVFKPKIDT--R-S--IRNIQSRT 62 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH-HHHHHHH----------------------TTCCEEEEEECCCG--G-G--CSSCCCCC
T ss_pred CcEEEEEECCCCCcHHHHHHH-HHHHHHh----------------------cCCEEEEEEeccCc--h-H--HHHHHHhc
Confidence 466778999999999966332 2332211 13478888876531 0 0 01122222
Q ss_pred CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhh
Q 009003 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 354 (547)
Q Consensus 292 ~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll 354 (547)
++.. ..+.+.+...++..+... ..-..+++||||||+.+.
T Consensus 63 G~~~-------------------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 63 GTSL-------------------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp CCSS-------------------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGSC
T ss_pred CCCc-------------------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccCc
Confidence 2211 124456777777776542 223457999999999753
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.062 Score=52.92 Aligned_cols=19 Identities=21% Similarity=-0.050 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
.+.++++.||+|+|||++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999663
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.85 E-value=0.01 Score=54.10 Aligned_cols=20 Identities=20% Similarity=0.033 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~ 231 (547)
.|+-.+++|++|||||.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELI 26 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHH
Confidence 35567899999999996643
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.84 E-value=0.0078 Score=54.52 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
|.-++++|++|+|||...
T Consensus 3 g~i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL 20 (184)
T ss_dssp CCEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 566789999999999664
No 110
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.84 E-value=0.015 Score=62.78 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 197 EPTPIQKACIPAAAHQ-GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~-~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
.+|.-|.+++..++.- ....++.|+-|.|||.+..+.+-... .+++|.+||.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--------------------------~~~~vtAP~~~ 228 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--------------------------GRAIVTAPAKA 228 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--------------------------SCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--------------------------hCcEEECCCHH
Confidence 6899999999888641 22468899999999966555433221 13699999987
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 276 LALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 276 La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
-+..+.+.... .|-+..|..+.. .+...++||||||=.|
T Consensus 229 a~~~l~~~~~~-----------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaI-- 267 (671)
T 2zpa_A 229 STDVLAQFAGE-----------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAI-- 267 (671)
T ss_dssp SCHHHHHHHGG-----------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGS--
T ss_pred HHHHHHHHhhC-----------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcC--
Confidence 66544332211 144556766432 1235799999999876
Q ss_pred cCChHHHHHHHHh
Q 009003 356 NGHFRELQSIIDM 368 (547)
Q Consensus 356 ~~~~~~l~~i~~~ 368 (547)
-...+..++..
T Consensus 268 --p~pll~~ll~~ 278 (671)
T 2zpa_A 268 --PAPLLHQLVSR 278 (671)
T ss_dssp --CHHHHHHHHTT
T ss_pred --CHHHHHHHHhh
Confidence 35666667643
No 111
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.74 E-value=0.016 Score=63.57 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... +....++|+|+.|+..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~-------------------~~~~~~IL~lTfT~~A 59 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-------------------GYQARHIAAVTFTNKA 59 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-------------------CCCGGGEEEEESSHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhc-------------------CCCHHHeEEEeccHHH
Confidence 478999999853 367899999999999976444344333221 1123479999999999
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEE
Q 009003 277 ALQVTDHLKGVAKGI---NVRVVPI 298 (547)
Q Consensus 277 a~qv~~~l~~~~~~~---~~~v~~~ 298 (547)
|.++.+.+..+.... ++.|..+
T Consensus 60 a~em~~Rl~~~l~~~~~~~~~v~Tf 84 (673)
T 1uaa_A 60 AREMKERVGQTLGRKEARGLMISTF 84 (673)
T ss_dssp HHHHHHHHHHHSCTTTTTTSEEEEH
T ss_pred HHHHHHHHHHHcCcccccCCEEEeH
Confidence 999999998764422 3555443
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.52 E-value=0.046 Score=53.97 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999954
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.19 Score=45.79 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=18.7
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
..-.+|||||+|.+.. .....+..++...
T Consensus 101 ~~~~vliiDe~~~l~~-~~~~~l~~~l~~~ 129 (226)
T 2chg_A 101 APFKIIFLDEADALTA-DAQAALRRTMEMY 129 (226)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHT
T ss_pred cCceEEEEeChhhcCH-HHHHHHHHHHHhc
Confidence 4457999999998853 2344455555543
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.32 E-value=0.013 Score=54.88 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999954
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.30 E-value=0.0088 Score=52.13 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999943
No 116
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.22 E-value=0.19 Score=46.41 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.4
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999954
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.15 E-value=0.26 Score=49.30 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 467899999999999954
No 118
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.05 E-value=0.095 Score=54.25 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..+++.||+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999954
No 119
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.05 E-value=0.045 Score=60.58 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 196 KEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 196 ~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
..+++-|.+++.. ....++|.|..|||||.+...-+...+.. .+...-++|+|+.|+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~-------------------~~~~p~~IL~vTFTnk 67 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAE-------------------KHVAPWNILAITFTNK 67 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHT-------------------TCCCGGGEEEEESSHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHh-------------------cCCCHHHeEEEeccHH
Confidence 4689999999853 35789999999999997644333333311 1122347999999999
Q ss_pred HHHHHHHHHHHhh
Q 009003 276 LALQVTDHLKGVA 288 (547)
Q Consensus 276 La~qv~~~l~~~~ 288 (547)
.|.++.+.+..+.
T Consensus 68 AA~Em~~Rl~~~l 80 (724)
T 1pjr_A 68 AAREMRERVQSLL 80 (724)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887764
No 120
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.96 E-value=0.16 Score=48.62 Aligned_cols=17 Identities=29% Similarity=0.139 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...++++||+|+|||..
T Consensus 64 ~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 35799999999999955
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.80 E-value=0.18 Score=51.88 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=29.8
Q ss_pred CCccEEEEeccchhh---hcCChHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcEEEEEeccCC
Q 009003 340 HTLSFFVLDEADRMI---ENGHFRELQSIIDMLPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFSATIA 407 (547)
Q Consensus 340 ~~l~~lViDEah~ll---~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 407 (547)
..+++||||.+-++. +..+...+..+...+. ...-+++++|+..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~------------------------pd~vlLVlDa~~g 224 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------------------------PDDVILVIDASIG 224 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC------------------------CSEEEEEEEGGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC------------------------CcceEEEEeCccc
Confidence 577999999998642 2334566666666654 3456778888865
No 122
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.79 E-value=0.054 Score=50.49 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=27.3
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
.|.-.+++|+.|||||.+.+--+.... ..+.+++|+-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-----------------------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-----------------------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-----------------------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-----------------------HCCCeEEEEeecCC
Confidence 366678899999999966433322221 23467999988753
No 123
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.74 E-value=0.14 Score=46.39 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=55.5
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.++||.++++..+..+...|... ++.+..++|+.........+ .....|+|||. .+..+ +++.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G----ldi~ 121 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKG----LDFP 121 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcC----CCcc
Confidence 47999999999999999999876 78899999999876654433 24789999993 23444 7888
Q ss_pred CccEEEE
Q 009003 341 TLSFFVL 347 (547)
Q Consensus 341 ~l~~lVi 347 (547)
.+++||.
T Consensus 122 ~v~~VI~ 128 (191)
T 2p6n_A 122 AIQHVIN 128 (191)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 8998887
No 124
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.67 E-value=0.11 Score=45.64 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=55.9
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.++||.++++..+..+...|... ++.+..++|+.........+ .....|+|+|. .+..+ +++.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~~ 102 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDIE 102 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cchh
Confidence 47999999999999999998876 78899999999876654433 34688999993 22333 7888
Q ss_pred CccEEEEec
Q 009003 341 TLSFFVLDE 349 (547)
Q Consensus 341 ~l~~lViDE 349 (547)
.+++||.-.
T Consensus 103 ~~~~Vi~~~ 111 (163)
T 2hjv_A 103 NISLVINYD 111 (163)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 899888643
No 125
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.61 E-value=0.038 Score=50.98 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=25.1
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHH
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRE 275 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~ 275 (547)
|.-.+++|+.|||||.+.+--+.+.. ..+.+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-----------------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-----------------------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-----------------------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-----------------------HCCCEEEEEEeccC
Confidence 44557899999999966433322221 12457999999864
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.59 E-value=0.046 Score=50.41 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=51.5
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCC
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGI 291 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~ 291 (547)
.|.-.+++|+.|||||... +-.+.+... .+.+++|+.|...--. -...++...
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~~----------------------~g~kvli~kp~~D~R~----~~~~I~Sr~ 79 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGIY----------------------AKQKVVVFKPAIDDRY----HKEKVVSHN 79 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEEEC---------------CBT
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHHH----------------------cCCceEEEEeccCCcc----hhhhHHHhc
Confidence 4666789999999999653 323333211 1357999999764110 011222333
Q ss_pred CcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHH
Q 009003 292 NVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 366 (547)
Q Consensus 292 ~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~ 366 (547)
|+.. ..+.|..+..+...+ ...+.+|+||||+-+. ......+..+.
T Consensus 80 G~~~-------------------~a~~v~~~~di~~~i---------~~~~dvV~IDEaQFf~-~~~v~~l~~la 125 (219)
T 3e2i_A 80 GNAI-------------------EAINISKASEIMTHD---------LTNVDVIGIDEVQFFD-DEIVSIVEKLS 125 (219)
T ss_dssp TBCC-------------------EEEEESSGGGGGGSC---------CTTCSEEEECCGGGSC-THHHHHHHHHH
T ss_pred CCce-------------------eeEEeCCHHHHHHHH---------hcCCCEEEEechhcCC-HHHHHHHHHHH
Confidence 3322 224555554443222 2467899999999764 33444455444
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.47 E-value=0.24 Score=49.81 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45799999999999955
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.44 E-value=0.052 Score=49.25 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=14.2
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
++=.++.||+|||||.-
T Consensus 20 g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE 36 (195)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred eEEEEEECCCCCcHHHH
Confidence 56678999999999944
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.40 E-value=0.11 Score=52.13 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999954
No 130
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.31 E-value=0.18 Score=49.94 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHH---hcCC---cEEEEccCCChhhHHH
Q 009003 199 TPIQKACIPAAA---HQGK---DVIGAAETGSGKTLAF 230 (547)
Q Consensus 199 ~~iQ~~~i~~~l---~~~~---dvli~a~TGsGKT~~~ 230 (547)
.|+|..++..+. .+|+ .+++.||.|+|||...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 567776665442 2343 4899999999999653
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.25 E-value=0.061 Score=52.54 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..+++.||+|+|||..
T Consensus 67 ~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999955
No 132
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.11 Score=46.19 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=55.5
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+++..|..++..|... ++.+..++|+.........+ .+...|+|||. .+.. .+++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~----Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCAR----GIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCT----TTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhc----CCCc
Confidence 458999999999999999888765 78899999999886654433 34689999993 2233 3788
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+.+||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 89998885
No 133
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.20 E-value=0.15 Score=44.81 Aligned_cols=73 Identities=16% Similarity=0.375 Sum_probs=56.0
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.++++..+..+...|... ++.+..++|+.........+ .....|+|||. .+..+ +++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCc
Confidence 357999999999999999988875 78889999999876654433 34689999993 23333 788
Q ss_pred CCccEEEEec
Q 009003 340 HTLSFFVLDE 349 (547)
Q Consensus 340 ~~l~~lViDE 349 (547)
..+.+||.-.
T Consensus 97 ~~~~~Vi~~~ 106 (165)
T 1fuk_A 97 QQVSLVINYD 106 (165)
T ss_dssp CSCSEEEESS
T ss_pred ccCCEEEEeC
Confidence 8898887643
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.19 E-value=0.48 Score=41.74 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...++++||+|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999954
No 135
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.04 E-value=0.09 Score=61.75 Aligned_cols=70 Identities=27% Similarity=0.300 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 197 EPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 197 ~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
.+|+-|.++|.. .+++++|.|..|||||.+.+--++..+... ..+...-++|+|++|+..
T Consensus 10 ~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~-----------------~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 10 TWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAE-----------------ENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCS-----------------SSCCCGGGEEEECSSHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----------------CCCCCccceEEEeccHHH
Confidence 689999999853 478999999999999977544455444211 011233479999999999
Q ss_pred HHHHHHHHHH
Q 009003 277 ALQVTDHLKG 286 (547)
Q Consensus 277 a~qv~~~l~~ 286 (547)
|..+.+.+..
T Consensus 70 a~e~~~ri~~ 79 (1232)
T 3u4q_A 70 AAEMKHRIAE 79 (1232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888766
No 136
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.78 E-value=0.14 Score=50.47 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=17.7
Q ss_pred CccEEEEeccchhhhcCChHHHHHHHHh
Q 009003 341 TLSFFVLDEADRMIENGHFRELQSIIDM 368 (547)
Q Consensus 341 ~l~~lViDEah~ll~~~~~~~l~~i~~~ 368 (547)
...+|||||+|.+........+..++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 5689999999998512223444444444
No 137
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=93.66 E-value=0.18 Score=46.34 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=55.4
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.++||.|+|+.-+..++..|... ++.+..++|+.....+...+ .+..+|+|||. .+.. .+++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~----Gidi~ 98 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR----GLDIP 98 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC----SSSCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc----CCCCc
Confidence 47999999999999999999876 78899999999887665443 34688999993 2333 37888
Q ss_pred CccEEEE
Q 009003 341 TLSFFVL 347 (547)
Q Consensus 341 ~l~~lVi 347 (547)
.+.+||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 9988874
No 138
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.66 E-value=0.15 Score=50.00 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.2
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..+++.||+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57999999999999954
No 139
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.64 E-value=0.32 Score=49.26 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+|+.||+|+|||+.
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999954
No 140
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.62 E-value=0.49 Score=46.13 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=13.5
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+++.||+|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 699999999999954
No 141
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.37 E-value=0.19 Score=45.52 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=14.5
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..++++||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999954
No 142
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.86 Score=46.17 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=31.8
Q ss_pred cccccccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQ---FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~---~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
+..+|++++=-....+.|.+.= +..|.-++... +...+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g----i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG----IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT----CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCCceEEeCCCCCCHHHH
Confidence 3467888876666666665531 11222222111 12357899999999999965
No 143
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.11 E-value=0.25 Score=43.57 Aligned_cols=17 Identities=29% Similarity=0.349 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 56899999999999954
No 144
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.91 E-value=0.57 Score=46.69 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.2
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.++++||+|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 479999999999954
No 145
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.90 E-value=0.34 Score=42.83 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=55.5
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.++||.|+++..+..++..|... ++.+..++|+.........+ .....|+|||.- +.. .+++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~----Gldi~ 98 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGR----GMDIE 98 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CST----TCCGG
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhc----Ccchh
Confidence 47999999999999999999876 78889999999876654433 347899999942 222 37788
Q ss_pred CccEEEEec
Q 009003 341 TLSFFVLDE 349 (547)
Q Consensus 341 ~l~~lViDE 349 (547)
.+.+||.-.
T Consensus 99 ~~~~Vi~~d 107 (172)
T 1t5i_A 99 RVNIAFNYD 107 (172)
T ss_dssp GCSEEEESS
T ss_pred hCCEEEEEC
Confidence 888888633
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.56 E-value=0.14 Score=51.44 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.6
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999954
No 147
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.52 E-value=0.25 Score=48.91 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=18.9
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
....+|||||+|.+.. .....+..++...
T Consensus 132 ~~~~vliiDE~~~l~~-~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA-DAQSALRRTMETY 160 (353)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCH-HHHHHHHHHHHhc
Confidence 3557999999998853 2334455555554
No 148
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.41 E-value=0.18 Score=45.30 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=45.9
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.++++..|..+...|... ++.+..++|+.+.......+ .....|+|||. . +..+ +++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~G----ldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----AARG----LDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----hhcC----CCc
Confidence 457999999999999999988875 78889999988765433222 35788999993 2 2332 778
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+.+||.
T Consensus 113 ~~~~~VI~ 120 (185)
T 2jgn_A 113 SNVKHVIN 120 (185)
T ss_dssp CSBSEEEE
T ss_pred ccCCEEEE
Confidence 88888876
No 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.67 E-value=0.26 Score=48.54 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=29.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----hcCCcEEEEccCCChhhHH
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAA----HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l----~~~~dvli~a~TGsGKT~~ 229 (547)
...|.++.-...+.+.|...=. .|. ..|.++ ...+.+++.||+|+|||+.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3567777766777666655310 010 011111 1245799999999999955
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.56 E-value=0.38 Score=46.81 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=13.3
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+++.||+|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 499999999999954
No 151
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.45 E-value=0.63 Score=47.83 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.1
Q ss_pred CcEEEEccCCChhhHHH
Q 009003 214 KDVIGAAETGSGKTLAF 230 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~ 230 (547)
.-+++++++|+|||...
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46789999999999653
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.33 E-value=0.49 Score=48.93 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=13.9
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..+|++||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3699999999999954
No 153
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.31 E-value=0.74 Score=46.55 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=57.1
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.+.++||.++++..+..+++.|... ++.+..++|+.........+ ....+|+|||. .+..+ ++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 3568999999999999999998876 78899999999876654433 35789999995 34444 88
Q ss_pred CCCccEEEE
Q 009003 339 LHTLSFFVL 347 (547)
Q Consensus 339 l~~l~~lVi 347 (547)
+..+++||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 889988875
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.23 E-value=0.59 Score=46.30 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=20.6
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
...+++||||+|.| +......+..++...+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYS 162 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHST
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhc
Confidence 45689999999994 4444566666666654
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.06 E-value=0.79 Score=45.31 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred CCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 340 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
....++||||+|.|.. .....+..++...+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~ 138 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYT 138 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTT
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCC
Confidence 3468999999998853 23445555665543
No 156
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.00 E-value=0.32 Score=48.67 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+|+.||+|+|||+.
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45799999999999965
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.89 E-value=0.58 Score=48.47 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+++.|++|+|||..
T Consensus 202 ~G~liiI~G~pG~GKTtl 219 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF 219 (454)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999954
No 158
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.84 E-value=2.2 Score=43.61 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=29.6
Q ss_pred ccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 174 FDAWNELRLHPLLMKSIYRL---QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~---~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
..+|.+++=-..+.+.|... .+..|.-++... +...+-+|+.||+|+|||+.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g----~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG----IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCCEEEEESCTTTTHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCceEEEECCCCCCHHHH
Confidence 45688876555655555442 111111111111 12356799999999999955
No 159
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=90.71 E-value=0.43 Score=46.48 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=55.0
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+|+.-+..++..|... ++.+..++|+.....+...+ .+..+|+|||. .+.. .+++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~----Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR----GLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC----STTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc----Cccc
Confidence 357999999999999988888765 88899999999876655443 35689999993 2233 3788
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+.+||.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 89988874
No 160
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.70 E-value=0.9 Score=47.88 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.++++||+|+|||..
T Consensus 77 ~~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTA 93 (516)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 36899999999999955
No 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.60 E-value=0.48 Score=44.10 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+++.||+|+|||..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp ETTCEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3577889999999999965
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.22 E-value=0.51 Score=46.08 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...++++||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46899999999999954
No 163
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.93 E-value=0.48 Score=43.58 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+++.||+|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 577889999999999954
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.93 E-value=0.63 Score=45.84 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...+++.||+|+|||..
T Consensus 55 ~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCCEEEECSTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35899999999999954
No 165
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.88 E-value=0.76 Score=46.32 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=56.4
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+++..|..++..|... ++.+..++|+.........+ .+..+|+|||. .+..+ +++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCc
Confidence 358999999999999999999876 77888999999876654433 34689999995 33443 889
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 333 p~~~~Vi~ 340 (412)
T 3fht_A 333 EQVSVVIN 340 (412)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 99998884
No 166
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.84 E-value=0.32 Score=48.98 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=15.0
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...+++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 56899999999999954
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.72 E-value=3.5 Score=37.18 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=22.3
Q ss_pred CCccEEEEeccchhhhcCC--hHHHHHHHHhCC
Q 009003 340 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 370 (547)
Q Consensus 340 ~~l~~lViDEah~ll~~~~--~~~l~~i~~~l~ 370 (547)
..+++||+||+-..+..++ .+.+..++..-|
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp 151 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARP 151 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc
Confidence 6789999999987766665 455666665543
No 168
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.57 E-value=0.47 Score=49.67 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
....+|+.||+|+|||+.
T Consensus 237 ~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCcEEEECcCCCCHHHH
Confidence 356899999999999964
No 169
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.32 E-value=0.79 Score=45.84 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=57.2
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||+++++..|..+++.|... ++.+..++|+.........+ .....|+|||. .+.. .+++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~----Gidi 316 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGR----GMDI 316 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSS----CBCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhc----CCCc
Confidence 458999999999999999999876 78888999998876554433 24689999993 2233 3889
Q ss_pred CCccEEEEecc
Q 009003 340 HTLSFFVLDEA 350 (547)
Q Consensus 340 ~~l~~lViDEa 350 (547)
..+++||.-..
T Consensus 317 ~~~~~Vi~~~~ 327 (391)
T 1xti_A 317 ERVNIAFNYDM 327 (391)
T ss_dssp TTEEEEEESSC
T ss_pred ccCCEEEEeCC
Confidence 99999887543
No 170
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=89.23 E-value=0.89 Score=45.37 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=59.0
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.+.++||+++++..|..+++.|... ++.+..++|+.........+ .+..+|+|||. .+..+ ++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----id 308 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----ID 308 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CC
Confidence 3468999999999999999999876 77888999999876654433 34688999995 33333 88
Q ss_pred CCCccEEEEeccc
Q 009003 339 LHTLSFFVLDEAD 351 (547)
Q Consensus 339 l~~l~~lViDEah 351 (547)
+..+++||.-...
T Consensus 309 ip~~~~Vi~~~~p 321 (395)
T 3pey_A 309 IPTVSMVVNYDLP 321 (395)
T ss_dssp CTTEEEEEESSCC
T ss_pred cccCCEEEEcCCC
Confidence 9999999875544
No 171
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.22 E-value=3.3 Score=43.75 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=58.6
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+|+.-|..++..|..... .++.+..++|+.........+ ....+|||||. .+..+ +++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----iDi 408 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 408 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC----CCc
Confidence 45899999999999999999987643 367888899999886654433 35789999995 33433 889
Q ss_pred CCccEEEEec
Q 009003 340 HTLSFFVLDE 349 (547)
Q Consensus 340 ~~l~~lViDE 349 (547)
..+++||.-.
T Consensus 409 p~v~~VI~~~ 418 (563)
T 3i5x_A 409 PNVHEVLQIG 418 (563)
T ss_dssp TTCCEEEEES
T ss_pred ccCCEEEEEC
Confidence 9999988654
No 172
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.14 E-value=2.4 Score=46.10 Aligned_cols=77 Identities=22% Similarity=0.369 Sum_probs=61.2
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||+|+|+..|..+.+.|... ++.+..++|+.........+ .+..+|+|||. .+.. .+++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~----GlDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE----GLDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST----TCCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC----Cccc
Confidence 458999999999999999999876 78888899988876554442 25689999995 2333 3889
Q ss_pred CCccEEEEeccchh
Q 009003 340 HTLSFFVLDEADRM 353 (547)
Q Consensus 340 ~~l~~lViDEah~l 353 (547)
..+++||+=+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 99999999998864
No 173
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.02 E-value=1.7 Score=42.31 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=15.7
Q ss_pred HHhcCC--cEEEEccCCChhhHH
Q 009003 209 AAHQGK--DVIGAAETGSGKTLA 229 (547)
Q Consensus 209 ~l~~~~--dvli~a~TGsGKT~~ 229 (547)
.+.+++ ..|+.||.|+|||..
T Consensus 12 ~i~~~~~~~~Lf~Gp~G~GKtt~ 34 (305)
T 2gno_A 12 IIEKSEGISILINGEDLSYPREV 34 (305)
T ss_dssp HHHTCSSEEEEEECSSSSHHHHH
T ss_pred HHHCCCCcEEEEECCCCCCHHHH
Confidence 344444 688999999999854
No 174
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.98 E-value=0.78 Score=45.28 Aligned_cols=72 Identities=17% Similarity=0.397 Sum_probs=55.3
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||+++++..+..+++.|... ++.+..++|+.........+ .+..+|+|||. .+..+ +++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id~ 304 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----IDV 304 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CCc
Confidence 457999999999999999999876 78889999998876554433 34688999994 22222 778
Q ss_pred CCccEEEEe
Q 009003 340 HTLSFFVLD 348 (547)
Q Consensus 340 ~~l~~lViD 348 (547)
..+++||.-
T Consensus 305 ~~~~~Vi~~ 313 (367)
T 1hv8_A 305 NDLNCVINY 313 (367)
T ss_dssp SCCSEEEES
T ss_pred ccCCEEEEe
Confidence 888888864
No 175
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.98 E-value=1.5 Score=45.70 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCce
Q 009003 474 DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDV 513 (547)
Q Consensus 474 ~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v 513 (547)
...|...++.. ++++||.|.|...++.|.+.|...|+.+
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~ 409 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAP 409 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCC
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCc
Confidence 34555555432 5799999999999999999999887654
No 176
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.57 E-value=0.96 Score=45.44 Aligned_cols=71 Identities=7% Similarity=0.187 Sum_probs=55.6
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||+++++..+..+++.|... ++.+..++|+.........+ .....|+|||. .+.. .+++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~----Gidi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTR----GIDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSS----SCCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc----CCCc
Confidence 358999999999999999999887 77888999999876654433 34679999994 2233 3888
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 325 p~~~~Vi~ 332 (400)
T 1s2m_A 325 QAVNVVIN 332 (400)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 89988885
No 177
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.24 E-value=1 Score=48.29 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=56.7
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.+.++||.|+|+.-|.+++..|... ++.+..++|+......... ..+..+|||||. .+.. .++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~~----GID 332 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFGM----GID 332 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSCT----TCC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhc----CCC
Confidence 3568999999999999999999876 7889999999987665433 245789999994 2222 388
Q ss_pred CCCccEEEE
Q 009003 339 LHTLSFFVL 347 (547)
Q Consensus 339 l~~l~~lVi 347 (547)
+.++++||.
T Consensus 333 ~p~V~~VI~ 341 (591)
T 2v1x_A 333 KPDVRFVIH 341 (591)
T ss_dssp CSCEEEEEE
T ss_pred cccccEEEE
Confidence 899999884
No 178
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.00 E-value=0.092 Score=46.47 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=51.7
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.++||.++++..|..+...|... ++.+..++|+.........+. +...|+|||. .+..+ +++.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 47999999999999998888765 778888999887655443332 3578999993 22333 6777
Q ss_pred CccEEEEe
Q 009003 341 TLSFFVLD 348 (547)
Q Consensus 341 ~l~~lViD 348 (547)
.+.+||.-
T Consensus 98 ~~~~Vi~~ 105 (170)
T 2yjt_D 98 DVSHVFNF 105 (170)
Confidence 78777753
No 179
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.15 E-value=1.3 Score=45.30 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=55.3
Q ss_pred EEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCCC
Q 009003 266 RALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELHT 341 (547)
Q Consensus 266 ~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~ 341 (547)
++||.|+|+..|..+++.|... ++.+..++|+.........+ .....|+|||. .+..+ +++..
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 3999999999999999998876 78899999999876654443 34689999996 33443 88999
Q ss_pred ccEEEE
Q 009003 342 LSFFVL 347 (547)
Q Consensus 342 l~~lVi 347 (547)
+++||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998886
No 180
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.00 E-value=4.2 Score=43.26 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=59.1
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+|+..|..++..|..... .++.+..++|+.........+ ....+|||||. .+..+ +++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G----iDi 357 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 357 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC----CCc
Confidence 45899999999999999999987643 367888899999886654433 35789999995 23333 888
Q ss_pred CCccEEEEecc
Q 009003 340 HTLSFFVLDEA 350 (547)
Q Consensus 340 ~~l~~lViDEa 350 (547)
..+++||.-..
T Consensus 358 p~v~~VI~~~~ 368 (579)
T 3sqw_A 358 PNVHEVLQIGV 368 (579)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEcCC
Confidence 99999886543
No 181
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.94 E-value=0.53 Score=43.90 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCChhhHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~ 230 (547)
..|.-+.+.||+|||||...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHH
Confidence 46888999999999999553
No 182
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.88 E-value=2 Score=41.54 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++|++|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467888999999999954
No 183
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.78 E-value=1.2 Score=43.96 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=18.5
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
..|.-+++.|++|+|||.. ++-++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~-al~ia~~ 69 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSL-MMNMVLS 69 (338)
T ss_dssp CTTCEEEEEECTTSCHHHH-HHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHH
Confidence 3577889999999999954 3333333
No 184
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=87.75 E-value=1.4 Score=44.42 Aligned_cols=70 Identities=19% Similarity=0.381 Sum_probs=55.3
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.++||.|+++..+..+++.|... ++.+..++|+.........+ .+...|+|||. .+..+ +++.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi~ 343 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDVP 343 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCCT
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhCc----CCcc
Confidence 48999999999999999998876 77888999999876654433 34688999995 33333 8889
Q ss_pred CccEEEE
Q 009003 341 TLSFFVL 347 (547)
Q Consensus 341 ~l~~lVi 347 (547)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (410)
T 2j0s_A 344 QVSLIIN 350 (410)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 9988886
No 185
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.44 E-value=0.87 Score=46.98 Aligned_cols=25 Identities=40% Similarity=0.320 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
.|.-++++|++|+|||.. ++-++..
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~ 223 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQN 223 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHH
Confidence 467789999999999954 3434333
No 186
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.25 E-value=1.4 Score=46.53 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=55.9
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH----hcCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL----LKARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.++|+.-+..+++.|... ++.+..++|+.+....... ..+..+|+|||. .+.. .+++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~~----GiD~ 302 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGM----GINK 302 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCT----TTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhC----CCCc
Confidence 347999999999999999999876 7889999999987654432 245789999995 2232 3888
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
.++++||.
T Consensus 303 p~v~~VI~ 310 (523)
T 1oyw_A 303 PNVRFVVH 310 (523)
T ss_dssp TTCCEEEE
T ss_pred cCccEEEE
Confidence 99999885
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.04 E-value=18 Score=34.94 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.1
Q ss_pred cEEEEeccchhhh---cCChHHHHHHHHhC
Q 009003 343 SFFVLDEADRMIE---NGHFRELQSIIDML 369 (547)
Q Consensus 343 ~~lViDEah~ll~---~~~~~~l~~i~~~l 369 (547)
-+|||||+|.+.. ..+...+..+....
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 3899999999864 35666666666543
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.95 E-value=0.46 Score=40.56 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCChhhHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~ 230 (547)
..+..|++.||+|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999553
No 189
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.87 E-value=0.45 Score=40.58 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..+..|++.|++|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4678999999999999954
No 190
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=86.86 E-value=1.5 Score=47.40 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=40.0
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHH
Q 009003 477 LYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMI 533 (547)
Q Consensus 477 l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~ 533 (547)
|..++.. .+|++||||+|....+.++..|+. +... ...+|+..+|..++++|+
T Consensus 440 i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~ 492 (620)
T 4a15_A 440 IEDIILK-VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR 492 (620)
T ss_dssp HHHHHHH-HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT
T ss_pred HHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc
Confidence 3344433 367899999999999999998873 2222 566677788999999998
No 191
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=86.24 E-value=0.77 Score=37.02 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=34.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~ 523 (547)
...+++|||.+-..+...+..|+..|++|..|.|++...
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W 92 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSW 92 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHH
Confidence 356899999999999999999999999999999997643
No 192
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.18 E-value=0.74 Score=47.46 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=48.5
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCcc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLS 343 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~ 343 (547)
+.++||+||+++-|..+++.|... ++++..++|...............+|||||. .+..+ +++. ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEMG----ANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTCC----TTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhee----eccC-ce
Confidence 347999999999999999999876 7889899985443333333345789999994 23333 7788 88
Q ss_pred EEE
Q 009003 344 FFV 346 (547)
Q Consensus 344 ~lV 346 (547)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.47 E-value=0.75 Score=48.36 Aligned_cols=40 Identities=23% Similarity=0.051 Sum_probs=28.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 188 KSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 188 ~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
..|...|. +++.+..-+...+..|..++++||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34555553 34555556666667888999999999999944
No 194
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=85.47 E-value=2.1 Score=46.51 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=60.1
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh---c-CCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL---K-ARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||.|+|+..|..+.+.|... ++.+..++|+.........+ . +..+|+|||. .+.. .+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~----GlDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE----GLDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT----TCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhc----CccC
Confidence 358999999999999999998876 77888899988876554442 2 4689999993 2233 3889
Q ss_pred CCccEEEEeccchh
Q 009003 340 HTLSFFVLDEADRM 353 (547)
Q Consensus 340 ~~l~~lViDEah~l 353 (547)
..+++||+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 99999999888754
No 195
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.24 E-value=2 Score=40.98 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCChhhHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~ 230 (547)
..|.-+++.||+|+|||...
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 46888999999999999653
No 196
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=84.03 E-value=1.7 Score=36.15 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=33.3
Q ss_pred CcEEEEe-CChHHHHHHHHHHHHcCCceEEecCCcCHHH
Q 009003 487 GRTIVFC-TSIAALRHISSLLKILGIDVWTLHAQMQQRA 524 (547)
Q Consensus 487 ~k~LVF~-~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~e 524 (547)
.++|||| .+-..+...+..|+..|++|..|.|++....
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W~ 128 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAYR 128 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHHH
Confidence 6899999 5777888999999999999999999988654
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.11 E-value=4.9 Score=39.14 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++|++|+|||..
T Consensus 67 ~G~l~li~G~pG~GKTtl 84 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF 84 (315)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEeCCCCCHHHH
Confidence 577899999999999954
No 198
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=82.88 E-value=1.9 Score=44.04 Aligned_cols=74 Identities=23% Similarity=0.406 Sum_probs=52.9
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEc--------CCCHHHHHHHh----cCCCcEEEeChHHHHHHHhc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVG--------GMSTEKQERLL----KARPEVVVGTPGRLWELMSG 331 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~ 331 (547)
+.++||.++++..+..+.+.|... ++.+..++| +.....+...+ .+.+.|+|||. .+..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~ 431 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 431 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc
Confidence 468999999999999999999876 788888998 55544333222 24689999993 2233
Q ss_pred CCCCcccCCCccEEEEecc
Q 009003 332 GEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 332 ~~~~~~~l~~l~~lViDEa 350 (547)
+ +++..+++||+-+.
T Consensus 432 G----ldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 G----LDVPEVDLVVFYEP 446 (494)
T ss_dssp G----GGSTTCCEEEESSC
T ss_pred C----CCchhCCEEEEeCC
Confidence 3 88888998886543
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.69 E-value=3.9 Score=40.01 Aligned_cols=19 Identities=32% Similarity=0.095 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
.|.-+++.|++|+|||...
T Consensus 106 ~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp TTSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHhHHH
Confidence 4678899999999999543
No 200
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=82.54 E-value=1.4 Score=34.29 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=32.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCH
Q 009003 487 GRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 487 ~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
.+++|||.+-..+...+..|+..|+.+..+.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 789999999999999999999999998899999864
No 201
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=82.29 E-value=1.1 Score=35.33 Aligned_cols=38 Identities=11% Similarity=0.256 Sum_probs=33.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
+..+++|||.+-..+...+..|+..|+++..|.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 35689999999999999999999999999999998764
No 202
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.29 E-value=1.4 Score=51.27 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=61.3
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.+++|+||+++-+..+++.|..... ++++..++|++........+ .+..+|+|||. .+..+ +++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~G----iDi 880 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 880 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cceee----ecc
Confidence 56899999999999999999987743 56788899999876654433 35789999995 33443 889
Q ss_pred CCccEEEEeccch
Q 009003 340 HTLSFFVLDEADR 352 (547)
Q Consensus 340 ~~l~~lViDEah~ 352 (547)
.++.+||+..++.
T Consensus 881 p~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 881 PTANTIIIERADH 893 (1151)
T ss_dssp TTEEEEEETTTTS
T ss_pred cCCcEEEEeCCCC
Confidence 9999999887764
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.06 E-value=0.7 Score=56.07 Aligned_cols=23 Identities=30% Similarity=0.072 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCChhhHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPI 234 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~ 234 (547)
.++.+++++|+|+|||.....-+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala 1448 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVI 1448 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999997644333
No 204
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=81.99 E-value=1.6 Score=34.88 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=33.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...++||||.+-..+...+..|+..|+ +|..|.|++...
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 90 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAW 90 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHH
Confidence 356899999999899999999999999 499999997754
No 205
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=81.95 E-value=1.6 Score=47.46 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=48.9
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh-cCCCcEEEeChHHHHHHHhcCCCCcccCCCc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL-KARPEVVVGTPGRLWELMSGGEKHLVELHTL 342 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l 342 (547)
+.++||+||++.-|..++..|... ++++..++|.... .....+ ....+|||||. .+..+ +++. +
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~-~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v 474 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYD-TEYPKCKNGDWDFVITTD-----ISEMG----ANFG-A 474 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHH-HHGGGGGTCCCSEEEECG-----GGGTT----CCCC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHH-HHHHHHHCCCceEEEECc-----hhhcc----eeeC-C
Confidence 457999999999999999888866 7889999985222 222223 35689999994 23443 7777 7
Q ss_pred cEEE
Q 009003 343 SFFV 346 (547)
Q Consensus 343 ~~lV 346 (547)
.+||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.81 E-value=1.7 Score=48.03 Aligned_cols=94 Identities=22% Similarity=0.212 Sum_probs=0.0
Q ss_pred cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCCcE
Q 009003 215 DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGINVR 294 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~ 294 (547)
.++++||||+||| .||..++..+..- +..
T Consensus 523 ~~Ll~Gp~GtGKT-----------------------------------------------~lA~ala~~l~~~----~~~ 551 (758)
T 3pxi_A 523 SFIFLGPTGVGKT-----------------------------------------------ELARALAESIFGD----EES 551 (758)
T ss_dssp EEEEESCTTSSHH-----------------------------------------------HHHHHHHHHHHSC----TTC
T ss_pred EEEEECCCCCCHH-----------------------------------------------HHHHHHHHHhcCC----Ccc
Q ss_pred EEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEeccchhhhcCChHHHHHHHHh------
Q 009003 295 VVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM------ 368 (547)
Q Consensus 295 v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDEah~ll~~~~~~~l~~i~~~------ 368 (547)
++.+..+ .-..-...+.+.+...+... ...+|+|||+|.+. ......+..+++.
T Consensus 552 ~i~i~~s-----------~~~~~~~~~~~~l~~~~~~~--------~~~vl~lDEi~~~~-~~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 552 MIRIDMS-----------EYMEKHSTSGGQLTEKVRRK--------PYSVVLLDAIEKAH-PDVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp EEEEEGG-----------GGCSSCCCC---CHHHHHHC--------SSSEEEEECGGGSC-HHHHHHHHHHHHHSBCC--
T ss_pred eEEEech-----------hcccccccccchhhHHHHhC--------CCeEEEEeCccccC-HHHHHHHHHHhccCeEEcC
Q ss_pred -----CCCCCCCCCCCCcccccccccccccCCCcEEEEEe
Q 009003 369 -----LPMTNGSNKGQSEQTQNCVTVSSLQRKKRQTLVFS 403 (547)
Q Consensus 369 -----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 403 (547)
.. ....+|+.|
T Consensus 612 ~g~~~~~------------------------~~~~iI~tt 627 (758)
T 3pxi_A 612 KGRTVDF------------------------RNTILIMTS 627 (758)
T ss_dssp ---CCBC------------------------TTCEEEEEE
T ss_pred CCCEecc------------------------CCeEEEEeC
No 207
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=81.45 E-value=1.1 Score=35.62 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
...+++|||.+-..+...+..|...|+++..|.|++..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHH
Confidence 35689999999989999999999999999999998763
No 208
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.99 E-value=1.3 Score=45.29 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=29.7
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELAL 278 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 278 (547)
..++++.|+||||||... .+++..+... +..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~----------------------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR----------------------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT----------------------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC----------------------CCcEEEEeCCCchhH
Confidence 579999999999999763 3344433221 346777778877754
No 209
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=80.88 E-value=2 Score=44.25 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=49.4
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccE
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~ 344 (547)
.++||++||+.-|.+++..|... ++.+..++|..........-....+|||||. .+..+ +++.. .+
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~G----iDip~-~~ 254 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFRA-GR 254 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGSS----CCCCC-SE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHhC----cCCCC-CE
Confidence 37999999999999999988765 7888888887654332222335789999995 33444 77777 66
Q ss_pred EE
Q 009003 345 FV 346 (547)
Q Consensus 345 lV 346 (547)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 210
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=80.04 E-value=1.8 Score=44.45 Aligned_cols=68 Identities=9% Similarity=0.077 Sum_probs=48.7
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCcc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLS 343 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~ 343 (547)
+.++||+||++.-|..+++.|... ++++..++|+...........+..+|||||. .+..+ +++. +.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~G----iDip-~~ 236 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEMG----ANFK-AD 236 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGTS----CCCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHcC----cccC-Cc
Confidence 347999999999999999999876 7889999987433222223345789999995 33443 6666 55
Q ss_pred EE
Q 009003 344 FF 345 (547)
Q Consensus 344 ~l 345 (547)
+|
T Consensus 237 ~V 238 (431)
T 2v6i_A 237 RV 238 (431)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 211
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.78 E-value=0.92 Score=46.52 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=34.8
Q ss_pred ccccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 172 TEFDAWNELRLHPLLMKSIYRL---QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 172 ~~~~~f~~l~l~~~l~~~l~~~---~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
.+..+|.+++--..+.+.|.+. .+..|.-++...+ ...+.+|+.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~----~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI----RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC----CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeeEEECcCCCCHHHH
Confidence 3456799998878777777653 1122332322222 2357899999999999965
No 212
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=79.34 E-value=2.9 Score=41.53 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+++.|++|+|||..
T Consensus 60 ~G~iv~I~G~pGsGKTtL 77 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTV 77 (349)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 477899999999999955
No 213
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=79.13 E-value=5.3 Score=44.19 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=56.3
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhh-------cCCCcEEEEEEcCCCHHHHHHHhc---------CCCcEEEeChHHHHH
Q 009003 264 HLRALIITPTRELALQVTDHLKGVA-------KGINVRVVPIVGGMSTEKQERLLK---------ARPEVVVGTPGRLWE 327 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~---------~~~dIlv~TP~~l~~ 327 (547)
+..+||.+|++.-+.+++..|...+ ...++.+..++|+.....+...+. +...|||||.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 4589999999999999999888632 235788999999999877765543 24689999952
Q ss_pred HHhcCCCCcccCCCccEEEE
Q 009003 328 LMSGGEKHLVELHTLSFFVL 347 (547)
Q Consensus 328 ~l~~~~~~~~~l~~l~~lVi 347 (547)
+..+ +++..+.+||-
T Consensus 379 -ae~G----idIp~v~~VId 393 (773)
T 2xau_A 379 -AETS----LTIDGIVYVVD 393 (773)
T ss_dssp -HHHT----CCCTTEEEEEE
T ss_pred -HHhC----cCcCCeEEEEe
Confidence 2333 77888876663
No 214
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.93 E-value=0.95 Score=45.16 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
.|.-++|.+|+|+|||.. ++.++..
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHH
Confidence 467889999999999954 3444433
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.77 E-value=0.82 Score=44.40 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=29.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
...|.++.-...+.+.|...-. .|..........-+..++.+++.||+|+|||+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 3567777666666665554300 000000000011123467899999999999954
No 216
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=78.75 E-value=1.6 Score=34.83 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
...+++|||.+-..+...+..|...|+.+..+.||+..
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~~ 92 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHHH
Confidence 35689999999888999999999999999889998753
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.70 E-value=4.3 Score=45.57 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
..+++++||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 45799999999999954
No 218
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.62 E-value=8 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.159 Sum_probs=13.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
++-+.+++++|+|||..
T Consensus 98 ~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SEEEEEECCTTTTHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45677889999999954
No 219
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.20 E-value=1.3 Score=42.00 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-++++||||||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 4678899999999999944
No 220
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=78.07 E-value=3.3 Score=37.73 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHhc---CCcEEEEccCCChhhHHHHHHHHHH
Q 009003 184 PLLMKSIYRLQFKEPTPIQKACIPAAAHQ---GKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 184 ~~l~~~l~~~~~~~~~~iQ~~~i~~~l~~---~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
..+.+.|...|+ .+... ..++..++.. .+.+++.||+|+|||..+ ..++..
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 456666665655 23333 3445555532 235999999999999543 444444
No 221
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=77.92 E-value=3.6 Score=44.24 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=48.8
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCccE
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLSF 344 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~ 344 (547)
.++||.++|+.-|..+++.|... ++++..++|...............+|||||. .+..+ +++. +++
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~rG----iDi~-v~~ 421 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFR-AGR 421 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGTT----CCCC-CSE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHcC----cccC-ceE
Confidence 47999999999999999999876 7788888886332222222335789999996 33443 6674 777
Q ss_pred EE
Q 009003 345 FV 346 (547)
Q Consensus 345 lV 346 (547)
||
T Consensus 422 VI 423 (618)
T 2whx_A 422 VI 423 (618)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 222
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=77.66 E-value=2.2 Score=34.10 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...+++|||.+-..+...+..|...|+ +|..|.|++...
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 457899999998899999999999999 588999998754
No 223
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=77.58 E-value=1.6 Score=36.14 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=33.1
Q ss_pred CCCcEEEEeCChHH--HHHHHHHHHHcCCceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAA--LRHISSLLKILGIDVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~--a~~L~~~L~~~g~~v~~lhg~m~~~ 523 (547)
...++||||.+-.. +...+..|+..|+.|..|.|++...
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~W 110 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGW 110 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHHH
Confidence 35689999998776 8899999999999999999987643
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=77.58 E-value=3.1 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|.-+++.+++|+|||.. ++.++..+
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHH
Confidence 467889999999999954 44444433
No 225
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=76.88 E-value=2.2 Score=41.77 Aligned_cols=23 Identities=30% Similarity=0.262 Sum_probs=16.5
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
| -+++.+|+|+|||.. ++.++..
T Consensus 29 G-iteI~G~pGsGKTtL-~Lq~~~~ 51 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNF-GLTMVSS 51 (333)
T ss_dssp E-EEEEEESSSSSHHHH-HHHHHHH
T ss_pred C-eEEEECCCCCCHHHH-HHHHHHH
Confidence 5 688999999999955 3334333
No 226
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=76.61 E-value=2.2 Score=36.31 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCcEEEEeCCh--HHHHHHHHHHHHcCCceEEecCCcCHH
Q 009003 486 QGRTIVFCTSI--AALRHISSLLKILGIDVWTLHAQMQQR 523 (547)
Q Consensus 486 ~~k~LVF~~s~--~~a~~L~~~L~~~g~~v~~lhg~m~~~ 523 (547)
..++||||.+- ..+...+..|+..|++|..|.|++...
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~W 111 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYW 111 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHHH
Confidence 56899999987 588899999999999999999998743
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.12 E-value=2.5 Score=46.85 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.||+.||+|+|||+.
T Consensus 238 p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999955
No 228
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=76.08 E-value=7.5 Score=40.38 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=53.3
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
...+|++..+.-+..+.+.|... +.++..++|++........+ ....+|+|||+..+. .+ +++.
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~----~G----iDip 415 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS----TG----ISVK 415 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH----HS----CCCC
T ss_pred CCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh----cc----cccc
Confidence 34555555577777777777654 45888899998876544322 356799999977664 33 7889
Q ss_pred CccEEEEeccc
Q 009003 341 TLSFFVLDEAD 351 (547)
Q Consensus 341 ~l~~lViDEah 351 (547)
.+.+||+..+.
T Consensus 416 ~v~~vi~~~~~ 426 (510)
T 2oca_A 416 NLHHVVLAHGV 426 (510)
T ss_dssp SEEEEEESSCC
T ss_pred cCcEEEEeCCC
Confidence 99999998776
No 229
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=76.00 E-value=2.3 Score=35.86 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=34.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...++||||.+-..+...+..|+..|+ +|..|.|++...
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W 120 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKW 120 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHHH
Confidence 457899999998889999999999999 699999998743
No 230
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.78 E-value=1.9 Score=40.74 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3578999999999999954
No 231
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=75.66 E-value=3.4 Score=36.77 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHHhcCC-cEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHH
Q 009003 198 PTPIQKACIPAAAHQGK-DVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTREL 276 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~-dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~L 276 (547)
..+-|..++..++...+ -.++.++-|++||...+.-++.... ..|.++.||+|+..-
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~----------------------~~Gr~V~vLAp~~~s 92 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR----------------------EQGREVQIIAADRRS 92 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH----------------------HTTCCEEEECSTTHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH----------------------hcCeEEEEEcCchHH
Confidence 34678888888875444 4567889999999775443333221 135689999999876
Q ss_pred HHHH
Q 009003 277 ALQV 280 (547)
Q Consensus 277 a~qv 280 (547)
....
T Consensus 93 ~~~l 96 (189)
T 2l8b_A 93 QMNM 96 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 232
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=75.44 E-value=3 Score=45.16 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=50.9
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTL 342 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l 342 (547)
.+.++||.++|+.-|.++++.|... ++.+..++|+.....+ ...+.+|||||.- +..+ +++. +
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATdV-----aerG----IDId-V 457 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATDA-----LMTG----YTGD-F 457 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECTT-----HHHH----CCCC-B
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECCh-----HHcc----CCCC-C
Confidence 3568999999999999999988865 7889999999887643 3456699999952 2222 5564 7
Q ss_pred cEEE
Q 009003 343 SFFV 346 (547)
Q Consensus 343 ~~lV 346 (547)
++||
T Consensus 458 ~~VI 461 (666)
T 3o8b_A 458 DSVI 461 (666)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 233
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=75.35 E-value=9.7 Score=38.23 Aligned_cols=51 Identities=6% Similarity=0.126 Sum_probs=45.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHH---cCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKI---LGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~---~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
.+.++||.++++.-|.+++..++. .|+.+..+||+++..+|...+..+..+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~ 116 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED 116 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC
Confidence 567999999999999999999998 588999999999998888888777665
No 234
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.25 E-value=2 Score=42.89 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=19.1
Q ss_pred HHHHHhcCCcEEEEccCCChhhHH
Q 009003 206 IPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 206 i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
+...+..|..++++||||||||..
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHH
Confidence 334456799999999999999943
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.19 E-value=2 Score=38.75 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.3
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|+-+.++||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999944
No 236
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=75.17 E-value=0.59 Score=48.60 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=0.0
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
..++||.||++.-|..++..|... ++.+..++|+.........+ ....+|||||. .+..+ +++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~G----lDi 399 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccccC----Ccc
Confidence 457999999999999999888776 77888899988765544333 23678999994 33333 778
Q ss_pred CCccEEE
Q 009003 340 HTLSFFV 346 (547)
Q Consensus 340 ~~l~~lV 346 (547)
..+.+||
T Consensus 400 p~v~~VI 406 (479)
T 3fmp_B 400 EQVSVVI 406 (479)
T ss_dssp -------
T ss_pred ccCCEEE
Confidence 8888876
No 237
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=75.16 E-value=4.7 Score=38.97 Aligned_cols=70 Identities=10% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCccc
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~ 338 (547)
.+.++||.+++++.+..+++.+. .+..++|+.........+ .+..+|+|||. .+..+ ++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 281 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASRG----LD 281 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHTT----CC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccccC----CC
Confidence 34579999999999888776654 456788888876554433 34689999995 34444 88
Q ss_pred CCCccEEEEec
Q 009003 339 LHTLSFFVLDE 349 (547)
Q Consensus 339 l~~l~~lViDE 349 (547)
+..+++||.-.
T Consensus 282 ~~~~~~Vi~~~ 292 (337)
T 2z0m_A 282 IPLVEKVINFD 292 (337)
T ss_dssp CCCBSEEEESS
T ss_pred ccCCCEEEEec
Confidence 88999888643
No 238
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=74.66 E-value=2.9 Score=35.09 Aligned_cols=39 Identities=8% Similarity=0.162 Sum_probs=33.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCc-eEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGID-VWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~-v~~lhg~m~~~ 523 (547)
...++||||.+-..+...+..|+..|+. |..|.|++...
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W 124 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAW 124 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHH
Confidence 4568999999988899999999999995 99999998643
No 239
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.56 E-value=1.6 Score=41.53 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=29.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH-HhcCCcEEEEccCCChhhHH
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQ-KACIPAA-AHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ-~~~i~~~-l~~~~dvli~a~TGsGKT~~ 229 (547)
..|.++.-.....+.+...-. .+.+ ...+..+ +.....+++.||+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 457777666666666654310 0111 1111111 12467899999999999954
No 240
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.11 E-value=1.5 Score=44.08 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=47.5
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh----cCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL----KARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
..++||+++++..+..+++.|... ++.+..++|+.........+ .+...|||||. .+.. .+++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidi 346 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLAR----GIDV 346 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC------CCG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cccc----CCCc
Confidence 347999999999999999888765 77888899998876554433 24678999995 2222 3777
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 347 p~v~~Vi~ 354 (414)
T 3eiq_A 347 QQVSLVIN 354 (414)
T ss_dssp GGCSCEEE
T ss_pred cCCCEEEE
Confidence 88888775
No 241
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=73.94 E-value=4.3 Score=30.70 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=30.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCc-eEEecCCcC
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGID-VWTLHAQMQ 521 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~-v~~lhg~m~ 521 (547)
+..+++|||.+-..+...+..|+..|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4578999999988999999999999995 6666 8765
No 242
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=73.82 E-value=8.1 Score=40.29 Aligned_cols=75 Identities=12% Similarity=0.258 Sum_probs=46.5
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEc--------CCCHHHHHHH---hc--CCCcEEEeChHHHHHHHh
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVG--------GMSTEKQERL---LK--ARPEVVVGTPGRLWELMS 330 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~---~~--~~~dIlv~TP~~l~~~l~ 330 (547)
+.++||.++++..+..+...|........+.+..++| +++...+... +. +..+|+|||. .+.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh
Confidence 4589999999999999999998765333344444444 5554443322 22 3578999994 223
Q ss_pred cCCCCcccCCCccEEEE
Q 009003 331 GGEKHLVELHTLSFFVL 347 (547)
Q Consensus 331 ~~~~~~~~l~~l~~lVi 347 (547)
. .+++..+++||.
T Consensus 464 ~----GlDlp~v~~VI~ 476 (555)
T 3tbk_A 464 E----GIDIAECNLVIL 476 (555)
T ss_dssp C----CEETTSCSEEEE
T ss_pred c----CCccccCCEEEE
Confidence 3 388999999886
No 243
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=73.79 E-value=2.7 Score=34.89 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCc-eEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGID-VWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~-v~~lhg~m~~~ 523 (547)
...++||||.+-..+...+..|...|+. |..|.|++...
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W 120 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAW 120 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHHH
Confidence 3578999999988899999999999994 99999998644
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.20 E-value=6.8 Score=37.15 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCCCcHHHHHH-HHHHHhcC---C-cEEEEccCCChhhHHHH
Q 009003 184 PLLMKSIYRLQFKEPTPIQKAC-IPAAAHQG---K-DVIGAAETGSGKTLAFG 231 (547)
Q Consensus 184 ~~l~~~l~~~~~~~~~~iQ~~~-i~~~l~~~---~-dvli~a~TGsGKT~~~~ 231 (547)
..+.+.|...|+. +++... +..+++.. + .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3567777777774 555433 44445321 2 59999999999996644
No 245
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=73.11 E-value=2.8 Score=42.26 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCChhhHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGL 232 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~l 232 (547)
.+.+++++|+||||||.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 467899999999999965433
No 246
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=73.10 E-value=3.8 Score=34.68 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=33.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...++||||.+-..+...+..|...|+ +|..|.|++...
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W 94 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAW 94 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHHH
Confidence 356899999999999999999999999 488999987644
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.47 E-value=7 Score=37.31 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...+++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 67899999999999954
No 248
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=72.45 E-value=8.1 Score=41.95 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=55.2
Q ss_pred EEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHH---HHHHhc---CCCcEEEeChHHHHHHHhcCCCCcccCC
Q 009003 267 ALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEK---QERLLK---ARPEVVVGTPGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 267 ~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~---~~~~~~---~~~dIlv~TP~~l~~~l~~~~~~~~~l~ 340 (547)
.+|+++|+.-+.+++..|... ++.+..++|+..... ....+. +..+|||||. .+..+ +++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~G----lDi- 388 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGMG----LNL- 388 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGSS----CCC-
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHCC----cCc-
Confidence 467799999899988888875 788899999999873 344444 4579999996 33443 788
Q ss_pred CccEEEEeccchh
Q 009003 341 TLSFFVLDEADRM 353 (547)
Q Consensus 341 ~l~~lViDEah~l 353 (547)
.+++||+-.+...
T Consensus 389 ~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 SIRRIIFYSLIKP 401 (677)
T ss_dssp CBSEEEESCSBC-
T ss_pred CccEEEECCcccc
Confidence 8999998877654
No 249
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=72.45 E-value=3.6 Score=34.53 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=33.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...+++|||.+-..+...+..|...|+ +|..|.|++...
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W 129 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDW 129 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHHH
Confidence 356899999999999999999999999 499999997643
No 250
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.42 E-value=4.8 Score=36.64 Aligned_cols=38 Identities=29% Similarity=0.163 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 198 PTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
-+.-|..++..+ ..|.-+.+.||+|||||. ++-++.-+
T Consensus 8 k~~g~~~~l~~i-~~Ge~~~liG~nGsGKST--Ll~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAI-DTNTIVFGLGPAGSGKTY--LAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHH-HHCSEEEEECCTTSSTTH--HHHHHHHH
T ss_pred CCHhHHHHHHhc-cCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 344566777766 478899999999999994 44444443
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.20 E-value=3.8 Score=41.76 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHHHh-cCCcEEEEccCCChhhHH
Q 009003 202 QKACIPAAAH-QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 202 Q~~~i~~~l~-~~~dvli~a~TGsGKT~~ 229 (547)
+..++..++. .+.-++++||||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4444444432 455688999999999954
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.20 E-value=2.5 Score=50.61 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=54.6
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHhhcCCC
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGVAKGIN 292 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~~~~~~ 292 (547)
|+-|.+.+|.|||||... ++++....+ .+..|+++.+-.+|.... ++.+ |
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~----------------------~g~~~~~i~~e~~~~~~~---~~~~----G 1480 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQR----------------------EGKTCAFIDAEHALDPIY---ARKL----G 1480 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH----------------------TTCCEEEECTTSCCCHHH---HHHT----T
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHh----------------------cCCeEEEEecCCCCCHHH---HHHc----C
Confidence 577999999999999664 444443322 245688888766654443 3333 4
Q ss_pred cEEEEEEcCCCHHHHHHHhcCCCcEEEeChHH---HHHHHhcCCCCcccCCCccEEEEeccchhhh
Q 009003 293 VRVVPIVGGMSTEKQERLLKARPEVVVGTPGR---LWELMSGGEKHLVELHTLSFFVLDEADRMIE 355 (547)
Q Consensus 293 ~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~---l~~~l~~~~~~~~~l~~l~~lViDEah~ll~ 355 (547)
+.+ -+++|+-|.. .+..+.. .+.-..+++||||.+-.|..
T Consensus 1481 v~~-------------------~~l~~~~p~~~e~~l~~~~~----~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1481 VDI-------------------DNLLCSQPDTGEQALEICDA----LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp CCG-------------------GGCEEECCSSHHHHHHHHHH----HHHHTCCSEEEESCSTTCCC
T ss_pred CCH-------------------HHeEEeCCCcHHHHHHHHHH----HHHcCCCCEEEEccHHhCCc
Confidence 432 1267777743 2332221 12234678999999988764
No 253
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=71.91 E-value=2.5 Score=41.64 Aligned_cols=22 Identities=45% Similarity=0.527 Sum_probs=18.1
Q ss_pred HHHHhcCCcEEEEccCCChhhH
Q 009003 207 PAAAHQGKDVIGAAETGSGKTL 228 (547)
Q Consensus 207 ~~~l~~~~dvli~a~TGsGKT~ 228 (547)
...+..|..++++||||||||.
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHH
T ss_pred hhhccCCCEEEEECCCCCCHHH
Confidence 3344578999999999999994
No 254
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=71.53 E-value=11 Score=39.75 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMI 533 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~ 533 (547)
.+|++|||++|....+.++. ..+..+..-..+++. ..+++.|+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~ 434 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAIS 434 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTT
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHH
Confidence 47899999999999999987 345555554445664 45666775
No 255
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=71.52 E-value=3 Score=38.51 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++|++|+|||..
T Consensus 29 ~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 467889999999999954
No 256
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.18 E-value=13 Score=29.48 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=40.1
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 489 TIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 489 ~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
.+||...-+....+...++..|+++.+++++...+.|.+-++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 5678888888888888899999999999999999999999988854
No 257
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=71.10 E-value=3.8 Score=34.85 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcC
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQ 521 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~ 521 (547)
...++||||.+-..+...+..|+..|+ +|..|.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356899999998888899999999999 5999999985
No 258
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=70.91 E-value=1.7 Score=47.47 Aligned_cols=75 Identities=15% Similarity=0.337 Sum_probs=51.1
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHh--hcCCCcEEEEEEcC--------CCHHHHHHHhc----CCCcEEEeChHHHHHHH
Q 009003 264 HLRALIITPTRELALQVTDHLKGV--AKGINVRVVPIVGG--------MSTEKQERLLK----ARPEVVVGTPGRLWELM 329 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~--~~~~~~~v~~~~g~--------~~~~~~~~~~~----~~~dIlv~TP~~l~~~l 329 (547)
+.++||.++++..+..+.+.|... ....|+.+..++|+ ++...+...+. +..+|||||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999999998864 22347888889998 77765544332 4678999994 22
Q ss_pred hcCCCCcccCCCccEEEE
Q 009003 330 SGGEKHLVELHTLSFFVL 347 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lVi 347 (547)
.. .+++..+++||.
T Consensus 475 ~~----GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 EE----GLDIKECNIVIR 488 (699)
T ss_dssp CT----TSCCCSCCCCEE
T ss_pred cc----CCccccCCEEEE
Confidence 33 488999998884
No 259
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.74 E-value=3.1 Score=41.44 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.6
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..+..++++||||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566889999999999944
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=70.73 E-value=2.5 Score=37.26 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|+-++++||+|||||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999954
No 261
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.72 E-value=2.5 Score=42.40 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|..++++||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4677899999999999944
No 262
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=70.41 E-value=5.3 Score=32.00 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=33.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcC
Q 009003 484 HGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQ 521 (547)
Q Consensus 484 ~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~ 521 (547)
....+++|||.+-..+...+..|+..|+....|.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34678999999999999999999999996688899976
No 263
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.36 E-value=20 Score=36.41 Aligned_cols=18 Identities=28% Similarity=0.108 Sum_probs=14.0
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
+..+++++++|+|||...
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999553
No 264
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=69.50 E-value=2.9 Score=40.60 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
.....|++.|++|+|||..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 3567899999999999954
No 265
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=68.80 E-value=3.1 Score=40.60 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..+++.||+|+|||..
T Consensus 45 ~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HTCCEEEESCCCHHHHHH
T ss_pred cCCeEEEECCCCCcHHHH
Confidence 588999999999999954
No 266
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.72 E-value=2 Score=44.06 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=30.2
Q ss_pred cccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 173 EFDAWNELRLHPLLMKSIYRL---QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~---~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
+..+|.+++--....+.|... .+..|.-++... +...+.+|+.||+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g----~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG----IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCCeEEEECCCCCcHHHH
Confidence 345688877555655555442 111111111111 12357899999999999965
No 267
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=68.30 E-value=2.2 Score=41.52 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=13.3
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.-++|+||||||||..
T Consensus 11 ~~i~i~GptgsGKt~l 26 (316)
T 3foz_A 11 KAIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCccCHHHH
Confidence 3478899999999954
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=67.93 E-value=3.1 Score=37.73 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577789999999999954
No 269
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.70 E-value=2.3 Score=41.48 Aligned_cols=17 Identities=35% Similarity=0.186 Sum_probs=13.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
..-++|+||||||||..
T Consensus 3 ~~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKT 19 (322)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCcCCHHHH
Confidence 34578899999999955
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.51 E-value=6.4 Score=41.10 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 203 KACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 203 ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
..++-.+. .+.++++.||+|+|||..
T Consensus 32 ~~l~~al~-~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAAL-SGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHH-HTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHh-cCCeeEeecCchHHHHHH
Confidence 33443444 689999999999999954
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.29 E-value=3.6 Score=36.74 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577889999999999944
No 272
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.21 E-value=2.8 Score=41.30 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.2
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++|+||||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999954
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.21 E-value=3.2 Score=37.16 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++|++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 578899999999999955
No 274
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.72 E-value=2.9 Score=37.88 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.++-+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 366789999999999843
No 275
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.65 E-value=4.7 Score=41.45 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++|++|+|||..
T Consensus 196 ~G~liiIaG~pG~GKTtl 213 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAF 213 (444)
T ss_dssp SSCEEEEEECSSSSHHHH
T ss_pred CCcEEEEEeCCCCChHHH
Confidence 567789999999999954
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=66.39 E-value=2 Score=37.64 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCChhhHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~ 231 (547)
.|.-+.++||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56778999999999995543
No 277
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=66.04 E-value=3.8 Score=40.75 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=15.7
Q ss_pred HHhcCCc--EEEEccCCChhhHH
Q 009003 209 AAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 209 ~l~~~~d--vli~a~TGsGKT~~ 229 (547)
++.+|.+ |++.|+||||||..
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHH
T ss_pred hccCCceeEEEeeCCCCCCCCEE
Confidence 3434665 58899999999955
No 278
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=65.99 E-value=11 Score=41.11 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=53.5
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcC--------------------------------CCcEEEEEEcCCCHHHHHHHh
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKG--------------------------------INVRVVPIVGGMSTEKQERLL 311 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~--------------------------------~~~~v~~~~g~~~~~~~~~~~ 311 (547)
+..+||.+|++.-+..++..+...... ....+..++|+.....+....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 357999999999999999988865322 013478899999987665433
Q ss_pred c----CCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEE
Q 009003 312 K----ARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVL 347 (547)
Q Consensus 312 ~----~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lVi 347 (547)
. +...|||||. .+..+ +++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~~G----idip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLAAG----VNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGGGS----SCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh-----HHhcc----cCCCceEEEEe
Confidence 2 5689999994 22333 78888877554
No 279
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.98 E-value=2.7 Score=39.31 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
....+++.||+|+|||..
T Consensus 38 ~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 356799999999999954
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=65.87 E-value=2.8 Score=36.87 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..++++|++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56899999999999954
No 281
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.86 E-value=3.6 Score=42.31 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=32.6
Q ss_pred cccccccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 173 EFDAWNELRLHPLLMKSIYRLQ---FKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~~---~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
+.-+|.+++=-..+.+.|.+.= +..|.-++... +...+.+|+.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G----i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG----IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT----CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC----CCCCCceEeeCCCCCcHHHH
Confidence 3467888877777777776531 11111111111 12467899999999999965
No 282
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.82 E-value=1.3 Score=44.33 Aligned_cols=71 Identities=18% Similarity=0.401 Sum_probs=0.0
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc----CCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLK----ARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||+++++.-+..+++.|... ++.+..++|+.........+. +...|+|||. .+..+ +++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----ldi 325 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhhcC----CCc
Confidence 457999999999999988888765 677888888877655433332 3578999995 22333 777
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 326 ~~~~~Vi~ 333 (394)
T 1fuu_A 326 QQVSLVIN 333 (394)
T ss_dssp --------
T ss_pred ccCCEEEE
Confidence 78887764
No 283
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=65.79 E-value=7.9 Score=36.67 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCHHH
Q 009003 477 LYYILSVHGQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQRA 524 (547)
Q Consensus 477 l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~~e 524 (547)
+...+......++++||.+-..+...+..|...|+ +|..|.|++....
T Consensus 172 l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~ 220 (265)
T 4f67_A 172 VQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYL 220 (265)
T ss_dssp HHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHH
T ss_pred HHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHHH
Confidence 33333344578999999999999999999999999 6999999987543
No 284
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=65.75 E-value=8.1 Score=42.72 Aligned_cols=55 Identities=11% Similarity=-0.121 Sum_probs=46.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHc----CCceEEecCCcCHHHHHHHHHHHHhhhhcC
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKIL----GIDVWTLHAQMQQRARLKLFSQMITWIRKR 539 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~----g~~v~~lhg~m~~~eR~~il~~F~~~~~k~ 539 (547)
.+.+++|.++|+.-|.+.+..+... |+.+..+||+++..+|..++..+.+|....
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~I 474 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDV 474 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 3579999999999998888877653 799999999999999999999888774443
No 285
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=65.65 E-value=2.9 Score=41.58 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
....+++.||+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356899999999999964
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=65.50 E-value=2.7 Score=36.24 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=12.9
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-++++|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999954
No 287
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=65.45 E-value=2.6 Score=40.36 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.++.+++.||+|+|||..
T Consensus 53 ~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCSEEEEESSSSSCHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 357899999999999954
No 288
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.41 E-value=4.4 Score=37.03 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.++||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688899999999999943
No 289
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=65.38 E-value=3.8 Score=36.99 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|.-+.|.||+|||||. ++-+|..+
T Consensus 21 ~g~~v~I~G~sGsGKST--l~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST--LSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHH
Confidence 46677899999999994 34444443
No 290
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=65.14 E-value=8 Score=45.00 Aligned_cols=33 Identities=3% Similarity=-0.050 Sum_probs=26.3
Q ss_pred CCcEEEEeCChH-HHHHHHHHHHHcCCceEEecC
Q 009003 486 QGRTIVFCTSIA-ALRHISSLLKILGIDVWTLHA 518 (547)
Q Consensus 486 ~~k~LVF~~s~~-~a~~L~~~L~~~g~~v~~lhg 518 (547)
.+-+.|.|.+.. .+..+...|...|+++....+
T Consensus 342 ~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 342 YKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 456889999974 788999999999998776443
No 291
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=64.95 E-value=2.7 Score=39.54 Aligned_cols=15 Identities=33% Similarity=0.011 Sum_probs=12.8
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-++++||||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 468999999999954
No 292
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=64.84 E-value=1.8 Score=41.42 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=24.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH-HhcCCcEEEEccCCChhhHH
Q 009003 175 DAWNELRLHPLLMKSIYRLQFKEPTPIQK-ACIPAA-AHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 175 ~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~-~~i~~~-l~~~~dvli~a~TGsGKT~~ 229 (547)
..|.+++-...+.+.|...= ..|+.. .++..+ +.-.+.+++.||+|+|||..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -----CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 56777776666666665421 111111 111111 11123499999999999954
No 293
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=64.82 E-value=9.2 Score=39.94 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
.+..++|.|+||||||.+.-.-++..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999996643333333
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=64.78 E-value=2.3 Score=37.70 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-++++||+|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3577889999999999953
No 295
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=64.34 E-value=3.1 Score=36.23 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++++|++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 56789999999999954
No 296
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.25 E-value=4.6 Score=35.67 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
++-+.+.||+|+|||..
T Consensus 1 ~~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCCEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34578999999999943
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=64.20 E-value=4.1 Score=39.54 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=20.3
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHHHHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIMQRLL 239 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l~~l~ 239 (547)
..|..+.|+||+||||| .++-+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKS--TLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKS--MLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHH--HHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHH--HHHHHHhhhc
Confidence 46888999999999999 4444555543
No 298
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.14 E-value=4.8 Score=41.00 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=31.2
Q ss_pred cccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 173 EFDAWNELRLHPLLMKSIYRL---QFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 173 ~~~~f~~l~l~~~l~~~l~~~---~~~~~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
+..+|.+++=-..+.+.|.+. .+..|.-++...+ ...+.+|+.||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi----~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI----KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC----CCCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCCCceECCCCchHHHH
Confidence 345788886555555555442 1223333322222 2357899999999999965
No 299
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=64.06 E-value=4.1 Score=44.35 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=44.5
Q ss_pred CCeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEc--------CCCHHHHHHH---hc--CCCcEEEeChHHHHHHH
Q 009003 263 GHLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVG--------GMSTEKQERL---LK--ARPEVVVGTPGRLWELM 329 (547)
Q Consensus 263 ~~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g--------~~~~~~~~~~---~~--~~~dIlv~TP~~l~~~l 329 (547)
.+.++||.++++..|..+++.|.......++++..++| +.....+... +. +...|||||. .+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 34589999999999999999998764333367777754 6655444332 22 4678999993 22
Q ss_pred hcCCCCcccCCCccEEEEecc
Q 009003 330 SGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 330 ~~~~~~~~~l~~l~~lViDEa 350 (547)
.. .+++..+++||.=..
T Consensus 472 ~~----GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 DE----GIDIAQCNLVILYEY 488 (696)
T ss_dssp CC----C---CCCSEEEEESC
T ss_pred hc----CCcCccCCEEEEeCC
Confidence 33 388899999886433
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.92 E-value=3.6 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++||+|||||..
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578889999999999944
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.59 E-value=5 Score=34.69 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++|++|||||..
T Consensus 3 ~~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCCEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999944
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=63.40 E-value=3.6 Score=37.02 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++||+|||||..
T Consensus 11 ~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCEEEECCTTSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 578899999999999954
No 303
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=63.30 E-value=4.4 Score=36.59 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|+-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 578899999999999954
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=63.29 E-value=4.1 Score=35.62 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..|+++|++|||||..
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 467899999999999954
No 305
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=63.26 E-value=4.4 Score=41.76 Aligned_cols=69 Identities=7% Similarity=0.021 Sum_probs=46.7
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeChHHHHHHHhcCCCCcccCCCcc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGTPGRLWELMSGGEKHLVELHTLS 343 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~ 343 (547)
+.++||.+|++.-|..+++.|... ++.+..+++...............+|||||.- +.. .+++.. .
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v-----~~~----GiDip~-~ 255 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTDI-----SEM----GANFGA-S 255 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESSC-----C-------CCCSC-S
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECCh-----HHh----CeecCC-C
Confidence 347999999999999999999876 78888888863322222222346799999942 222 266776 5
Q ss_pred EEE
Q 009003 344 FFV 346 (547)
Q Consensus 344 ~lV 346 (547)
+||
T Consensus 256 ~VI 258 (459)
T 2z83_A 256 RVI 258 (459)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 306
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=63.05 E-value=26 Score=31.35 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=36.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHHc-----CCceEEecCCcCHHHHHHHH
Q 009003 487 GRTIVFCTSIAALRHISSLLKIL-----GIDVWTLHAQMQQRARLKLF 529 (547)
Q Consensus 487 ~k~LVF~~s~~~a~~L~~~L~~~-----g~~v~~lhg~m~~~eR~~il 529 (547)
.++||.|+++.-+.++++.++.. ++.+..+||+.+...+...+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH
Confidence 48999999999999999888775 78999999999877665544
No 307
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=63.00 E-value=5.9 Score=33.00 Aligned_cols=36 Identities=6% Similarity=0.141 Sum_probs=31.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcC
Q 009003 486 QGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQ 521 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~ 521 (547)
..++||||.+-..+...+..|...|+ +|..+.|+|.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 56899999998888899999999999 5899999984
No 308
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.95 E-value=3.8 Score=40.58 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45899999999999965
No 309
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.60 E-value=3.4 Score=38.69 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 45799999999999954
No 310
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=62.39 E-value=8.5 Score=45.37 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
+++-++||+|||=.-+|......+...++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 4455799999998888776667777776554
No 311
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=62.14 E-value=4.7 Score=35.59 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..+.-++++|++|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577899999999999954
No 312
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=61.99 E-value=5.2 Score=36.69 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-++++||+|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4688899999999999954
No 313
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=61.67 E-value=11 Score=39.90 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=19.3
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
..+++|.|.||||||.+...-++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999976544444443
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=61.67 E-value=5.7 Score=35.52 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-++++|++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 477899999999999944
No 315
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.60 E-value=5.4 Score=35.94 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 18 ~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp -CCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688899999999999943
No 316
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=61.51 E-value=24 Score=32.60 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=35.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHc----CCceEEecCCcCHHHHHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKIL----GIDVWTLHAQMQQRARLK 527 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~----g~~v~~lhg~m~~~eR~~ 527 (547)
...++||.|+++.-+.++++.++.. ++.+..++|+.+...+..
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 156 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 156 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHH
Confidence 3457999999999999998887765 889999999988765543
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=61.49 E-value=3.7 Score=36.28 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++|++|||||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999954
No 318
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=61.02 E-value=22 Score=34.30 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.8
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-+++++++|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 44578999999999954
No 319
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=60.92 E-value=14 Score=34.99 Aligned_cols=49 Identities=6% Similarity=0.127 Sum_probs=41.5
Q ss_pred CCCcEEEEeC---------------------ChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 485 GQGRTIVFCT---------------------SIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 485 ~~~k~LVF~~---------------------s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
+.|-+|||+| +...++.|...|+.+|+.|.+ +.+++..+-.+++.+|..
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHH
Confidence 4678888887 457899999999999999765 678999999999999875
No 320
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=60.69 E-value=4.1 Score=36.43 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.6
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
+-|+++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999953
No 321
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=60.54 E-value=4.4 Score=39.65 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=13.6
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..++++||||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999954
No 322
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=60.46 E-value=5.9 Score=33.77 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=12.6
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-.+|.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999954
No 323
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.45 E-value=6 Score=39.35 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=17.4
Q ss_pred HHHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
++..++ +|.+ |++-|.||||||...
T Consensus 96 lv~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 344556 5665 466789999999653
No 324
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=60.17 E-value=4.6 Score=39.45 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=28.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH----hcCCcEEEEccCCChhhHH
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAAA----HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~l----~~~~dvli~a~TGsGKT~~ 229 (547)
...|.+++-...+.+.|...-. .|.+ .|.++ ...+.+++.||+|+|||+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3567777666666665544200 0000 01111 1236799999999999954
No 325
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=60.15 E-value=3.9 Score=35.57 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=13.0
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-++++|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999954
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.11 E-value=5.4 Score=34.62 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|..++++|+.|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356789999999999954
No 327
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.08 E-value=19 Score=42.33 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhCC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 370 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l~ 370 (547)
+++-+++|+||+=.-+|......+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 56678999999998888777777777776553
No 328
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.93 E-value=6.7 Score=38.42 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=14.2
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999954
No 329
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=59.87 E-value=6.6 Score=38.99 Aligned_cols=19 Identities=32% Similarity=0.153 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
.|.-+++.+++|+|||...
T Consensus 62 ~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5778999999999999653
No 330
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.81 E-value=7.1 Score=34.83 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCCccEEEEeccchh--hhcCChHHHHHHHH
Q 009003 339 LHTLSFFVLDEADRM--IENGHFRELQSIID 367 (547)
Q Consensus 339 l~~l~~lViDEah~l--l~~~~~~~l~~i~~ 367 (547)
+...++||+||+..+ .+..+...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999998777 34445666666664
No 331
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=59.38 E-value=4.3 Score=39.74 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
...+++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999954
No 332
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=59.02 E-value=13 Score=33.86 Aligned_cols=43 Identities=7% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHc-----CCceEEecCCcCHHHHHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKIL-----GIDVWTLHAQMQQRARLK 527 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~-----g~~v~~lhg~m~~~eR~~ 527 (547)
...++||.|+++.-+.++++.++.. ++.+..++|+.+..++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 138 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT 138 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH
Confidence 3568999999999999999988775 678999999998776654
No 333
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.88 E-value=6.5 Score=34.69 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=12.6
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999943
No 334
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=58.80 E-value=5.9 Score=35.77 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.7
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
-.+++|+.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5689999999999754
No 335
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=58.76 E-value=4.8 Score=38.72 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.8
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5688999999999954
No 336
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=58.69 E-value=6.9 Score=38.29 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=16.8
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
+..++ .|.+ |++.|+||||||...
T Consensus 70 v~~~l-~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVL-EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-CCCeEEEEEECCCCCCCceEe
Confidence 34455 4665 567899999999653
No 337
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=58.67 E-value=5 Score=39.57 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=13.1
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-++|+||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 578999999999954
No 338
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=58.02 E-value=32 Score=32.38 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=50.5
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHh---cC--CCc-EEEeChHHHHHHHhcCCCCccc
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLL---KA--RPE-VVVGTPGRLWELMSGGEKHLVE 338 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~--~~d-Ilv~TP~~l~~~l~~~~~~~~~ 338 (547)
-++||.+.++..+..+...|... .++.+..++|+++.......+ .. .+. ++++|- . ....++
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-~--------~g~Gln 180 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-A--------GGFGIN 180 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-T--------TCCCCC
T ss_pred CeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-h--------hcCCcC
Confidence 47999999999999888888763 156777889998875544332 22 355 455553 2 123477
Q ss_pred CCCccEEEEeccc
Q 009003 339 LHTLSFFVLDEAD 351 (547)
Q Consensus 339 l~~l~~lViDEah 351 (547)
+...++||+=+..
T Consensus 181 l~~a~~VI~~d~~ 193 (271)
T 1z5z_A 181 LTSANRVIHFDRW 193 (271)
T ss_dssp CTTCSEEEECSCC
T ss_pred cccCCEEEEECCC
Confidence 8888888864443
No 339
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.87 E-value=7.5 Score=39.28 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=18.1
Q ss_pred HHHHHHhcCCcE--EEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKDV--IGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~dv--li~a~TGsGKT~~~ 230 (547)
.+..++ .|.++ ++.|+||||||...
T Consensus 132 lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 455666 56654 56789999999664
No 340
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=57.83 E-value=4.7 Score=35.37 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++++|++|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999954
No 341
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=57.67 E-value=4.5 Score=34.84 Aligned_cols=15 Identities=13% Similarity=-0.106 Sum_probs=13.0
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-++++|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999954
No 342
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=57.50 E-value=16 Score=42.56 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=37.2
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKG 286 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~ 286 (547)
...+|.|.-|||||.+..--++..|...+ .......+...-++|+|+=|+.-|..+.+.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g-----------~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLG-----------GSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCS-----------SSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCC-----------cccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 35599999999999775554555542110 000000112234799999999777776666654
No 343
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=57.35 E-value=6.9 Score=38.65 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=16.4
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
+..++ .|.+ |++.|+||||||...
T Consensus 87 v~~~l-~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLL-EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHH-HTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhh-CCCceEEEEecCCCCCCCeEE
Confidence 33445 4655 467899999999653
No 344
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=57.34 E-value=1.6 Score=45.75 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=46.5
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHH----HHhcCCCcEEEeChHHHHHHHhcCCCCcccC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQE----RLLKARPEVVVGTPGRLWELMSGGEKHLVEL 339 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~~~dIlv~TP~~l~~~l~~~~~~~~~l 339 (547)
+.++||+|+++..|..++..|... ++.+..++|+....... ....+..+|+|||. .+..+ +++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~G----iDi 423 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIARG----IDV 423 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhcC----CCc
Confidence 457999999999999888887664 67788888887654322 22235678999995 33333 888
Q ss_pred CCccEEEE
Q 009003 340 HTLSFFVL 347 (547)
Q Consensus 340 ~~l~~lVi 347 (547)
..+++||.
T Consensus 424 p~v~~VI~ 431 (508)
T 3fho_A 424 SQVNLVVN 431 (508)
T ss_dssp TTCCEEEC
T ss_pred cCCCEEEE
Confidence 89998885
No 345
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=57.33 E-value=7.5 Score=38.12 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=17.8
Q ss_pred HHHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
.+..++ .|.+ |++.|+||||||...
T Consensus 72 lv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCI-DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCCEEEEEeECCCCCCCcEEE
Confidence 455566 5665 466899999999653
No 346
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=57.32 E-value=6.2 Score=36.74 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=27.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-HhcCCcEEEEccCCChhhHH
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKACIPAA-AHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~~i~~~-l~~~~dvli~a~TGsGKT~~ 229 (547)
..+|.++.-.......+...-.. . -...++..+ +.-.+.+++.||+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 35677776656555555443110 0 001122111 11134499999999999944
No 347
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.26 E-value=5.4 Score=41.04 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.4
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
++.+|+.||+|+|||...
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999653
No 348
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.24 E-value=5.6 Score=34.76 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=12.8
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-.+|+||+|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568999999999944
No 349
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=57.12 E-value=6.4 Score=35.19 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 198 PTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
.+..+...+ ....|.-+++.|++|||||..
T Consensus 12 ~~~~~~~~~--~~~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 12 VEKVDRQRL--LDQKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCHHHHHHH--HTSCCEEEEEECSTTSSHHHH
T ss_pred cCHHHHHHh--cCCCCeEEEEECCCCCCHHHH
Confidence 444444433 224577888999999999944
No 350
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.06 E-value=6.1 Score=49.68 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCcEEEEccCCChhhHHH
Q 009003 204 ACIPAAAHQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 204 ~~i~~~l~~~~dvli~a~TGsGKT~~~ 230 (547)
..+..++..++.+|++||||+|||+..
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 344556667999999999999999653
No 351
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=56.96 E-value=7.6 Score=38.71 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=16.2
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~ 229 (547)
+..++ .|.+ |++.|+||||||..
T Consensus 82 v~~~l-~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAF-EGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHH-TTCCEEEEEECSTTSSHHHH
T ss_pred HHHHh-cCCeeEEEEeCCCCCCCceE
Confidence 34455 4665 46689999999955
No 352
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.89 E-value=9.4 Score=48.66 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH-HHHHH--HHhcCCcEEEEccCCChhhHHHH
Q 009003 182 LHPLLMKSIYRLQFKEPTPIQK-ACIPA--AAHQGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 182 l~~~l~~~l~~~~~~~~~~iQ~-~~i~~--~l~~~~dvli~a~TGsGKT~~~~ 231 (547)
|...+...+.+.|+ .|++.+. .++.. ++...+.++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34556667778888 4566554 33321 23356789999999999997654
No 353
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=56.78 E-value=7.7 Score=38.36 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=16.2
Q ss_pred HHHHhcCCc--EEEEccCCChhhHHH
Q 009003 207 PAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 207 ~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
..++ .|.+ |++.|+||||||...
T Consensus 83 ~~~l-~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVL-EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHh-CCCceeEEeecCCCCCCCEEe
Confidence 3455 4655 466899999999653
No 354
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=56.71 E-value=6.3 Score=35.38 Aligned_cols=18 Identities=33% Similarity=0.093 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.-+.+.||+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 355678999999999943
No 355
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=56.67 E-value=7.5 Score=38.79 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=16.2
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~ 229 (547)
+..++ .|.+ |++.|+||||||..
T Consensus 94 v~~~l-~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVL-QGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHH
T ss_pred HHHHh-CCCeeeEEeecCCCCCCCEe
Confidence 34455 4665 45678999999965
No 356
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.65 E-value=7.6 Score=39.28 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=16.2
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~ 229 (547)
+..++ .|.+ |++.|.||||||..
T Consensus 147 V~~~l-~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 147 VQTIF-EGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHH-TTCEEEEEEEESTTSSHHHH
T ss_pred HHHHh-cCCceeEEeecCCCCCCCeE
Confidence 34455 4665 46678999999965
No 357
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=56.64 E-value=5.4 Score=37.02 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.5
Q ss_pred hcCCcEEEEccCCChhhH
Q 009003 211 HQGKDVIGAAETGSGKTL 228 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~ 228 (547)
..|.-+.+.||+|||||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357888999999999993
No 358
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=56.61 E-value=7.8 Score=38.59 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=16.6
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
+..++ .|.+ |++.|+||||||...
T Consensus 77 v~~~l-~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVL-AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-CCCceEEEeecCCCCCCceEE
Confidence 33455 4665 466899999999653
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.49 E-value=7.6 Score=37.58 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.+.-+.+.||+|||||.. +-+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTl--l~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT--IAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHH--HHHHHHH
Confidence 356788999999999943 4444443
No 360
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=56.33 E-value=16 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=15.0
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
|.-++|+||+|+|||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 567899999999999553
No 361
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=56.27 E-value=5.4 Score=40.27 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=12.8
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-++|+||||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 468899999999954
No 362
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=56.25 E-value=8.9 Score=43.63 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=56.9
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHH---hcC-C--CcEEEeChHHHHHHHhcCCCCcc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERL---LKA-R--PEVVVGTPGRLWELMSGGEKHLV 337 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~-~--~dIlv~TP~~l~~~l~~~~~~~~ 337 (547)
+.++||+|+++..+..+...|... .++++..++|+++....... +.. . ++|+||| .. +.. .+
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v----~~~----Gl 570 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EI----GSE----GR 570 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CC----TTC----SS
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-ch----hhc----CC
Confidence 458999999999999888888742 38889999999887554433 333 3 8999999 22 233 38
Q ss_pred cCCCccEEEEeccc
Q 009003 338 ELHTLSFFVLDEAD 351 (547)
Q Consensus 338 ~l~~l~~lViDEah 351 (547)
++..+.+||+-+++
T Consensus 571 Dl~~~~~VI~~d~p 584 (968)
T 3dmq_A 571 NFQFASHMVMFDLP 584 (968)
T ss_dssp CCTTCCEEECSSCC
T ss_pred CcccCcEEEEecCC
Confidence 89999999986665
No 363
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.25 E-value=5.8 Score=35.71 Aligned_cols=19 Identities=26% Similarity=0.031 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
.|.-+++.|++|+|||...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4677899999999999553
No 364
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=56.15 E-value=7.8 Score=38.48 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=16.8
Q ss_pred HHHHHHhcCCcE--EEEccCCChhhHH
Q 009003 205 CIPAAAHQGKDV--IGAAETGSGKTLA 229 (547)
Q Consensus 205 ~i~~~l~~~~dv--li~a~TGsGKT~~ 229 (547)
++..++ .|.++ ++.|+||||||..
T Consensus 95 lv~~~l-~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQAL-DGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHH-TTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHh-CCCceEEEEECCCCCCCceE
Confidence 344555 56654 5678999999965
No 365
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=56.14 E-value=7.3 Score=38.70 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=16.7
Q ss_pred HHHHHHhcCCc--EEEEccCCChhhHH
Q 009003 205 CIPAAAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 205 ~i~~~l~~~~d--vli~a~TGsGKT~~ 229 (547)
.+..++ .|.+ |++.|+||||||..
T Consensus 80 lv~~~l-~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVI-MGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHH-TTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHh-CCCceEEEEeCCCCCCCceE
Confidence 344455 5665 46689999999955
No 366
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=56.11 E-value=7.8 Score=38.32 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=16.7
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
+..++ .|.+ |++.|+||||||...
T Consensus 70 v~~~l-~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAI-QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHH-cCCccceeeecCCCCCCCeEE
Confidence 34455 4665 466899999999653
No 367
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=56.09 E-value=6.1 Score=37.59 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
+.|-+|||+++...++.|...|+.+|+.|.+ |.+++..+-.+.+.+|...
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHhc
Confidence 5688999999999999999999999999876 6789999999999998753
No 368
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=55.81 E-value=1.4e+02 Score=32.72 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=58.2
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcC----CCc--EEEeChHHHHHHHhcCCCCcc
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKA----RPE--VVVGTPGRLWELMSGGEKHLV 337 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~d--Ilv~TP~~l~~~l~~~~~~~~ 337 (547)
+-++||.+..+..+..+...|... ++.+..+.|+++.......+.. ... |+++|... ...+ +
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a----gg~G----l 639 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA----GGLG----I 639 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH----HTTT----C
T ss_pred CCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc----ccCC----C
Confidence 458999999999988888888766 7888889999988776555432 222 44444333 2333 7
Q ss_pred cCCCccEEEEeccchhhhcCChHHHHHH
Q 009003 338 ELHTLSFFVLDEADRMIENGHFRELQSI 365 (547)
Q Consensus 338 ~l~~l~~lViDEah~ll~~~~~~~l~~i 365 (547)
+|.....||+=+.+ |+....++.+
T Consensus 640 NL~~a~~VI~~D~~----wnp~~~~Qa~ 663 (800)
T 3mwy_W 640 NLMTADTVVIFDSD----WNPQADLQAM 663 (800)
T ss_dssp CCTTCCEEEESSCC----SCSHHHHHHH
T ss_pred CccccceEEEecCC----CChhhHHHHH
Confidence 88888888875444 5554444444
No 369
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=55.58 E-value=86 Score=31.11 Aligned_cols=89 Identities=8% Similarity=0.129 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCcEEEEccCCC-hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCC-eEEEEEccCHHHHHHHH
Q 009003 204 ACIPAAAHQGKDVIGAAETGS-GKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGH-LRALIITPTRELALQVT 281 (547)
Q Consensus 204 ~~i~~~l~~~~dvli~a~TGs-GKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lil~Ptr~La~qv~ 281 (547)
..+...+ .++.++|.|.||+ |..++-.|. . .+ -.++++.-+..-..++.
T Consensus 27 ~~~~~~~-~~k~vLVTGatG~IG~~l~~~L~------~----------------------~g~~~V~~~~r~~~~~~~~~ 77 (399)
T 3nzo_A 27 KELQSVV-SQSRFLVLGGAGSIGQAVTKEIF------K----------------------RNPQKLHVVDISENNMVELV 77 (399)
T ss_dssp HHHHHHH-HTCEEEEETTTSHHHHHHHHHHH------T----------------------TCCSEEEEECSCHHHHHHHH
T ss_pred HHHHHHh-CCCEEEEEcCChHHHHHHHHHHH------H----------------------CCCCEEEEEECCcchHHHHH
Confidence 3444555 5899999999987 766554332 1 13 25666666666666666
Q ss_pred HHHHHhhcCCCcEEEEEEcCCCHHHHHHHhc--CCCcEEEeC
Q 009003 282 DHLKGVAKGINVRVVPIVGGMSTEKQERLLK--ARPEVVVGT 321 (547)
Q Consensus 282 ~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~~~dIlv~T 321 (547)
..+.......+..+..+.++.........+. .++|+||-.
T Consensus 78 ~~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 78 RDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp HHHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred HHHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 6666554444456777777766544333322 567888743
No 370
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=55.49 E-value=2.8 Score=39.44 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=14.6
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45699999999999954
No 371
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=55.47 E-value=7.8 Score=38.43 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=15.7
Q ss_pred HHHHhcCCc--EEEEccCCChhhHH
Q 009003 207 PAAAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 207 ~~~l~~~~d--vli~a~TGsGKT~~ 229 (547)
..++ .|.+ |++.|+||||||..
T Consensus 74 ~~~l-~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 74 DDIL-NGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHT-TTCCEEEEEECSTTSSHHHH
T ss_pred HHHh-CCCcceEEEECCCCCCcceE
Confidence 3445 4665 46689999999965
No 372
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=55.45 E-value=8.1 Score=38.30 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=17.3
Q ss_pred HHHHHHhcCCcE--EEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKDV--IGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~dv--li~a~TGsGKT~~~ 230 (547)
.+..++ .|.++ ++.|+||||||...
T Consensus 84 lv~~~l-~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAF-DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHH-TTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHh-CCceeEEEeeCCCCCCCceEE
Confidence 344455 56654 66789999999663
No 373
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.40 E-value=6.2 Score=39.09 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCChhhHHH
Q 009003 212 QGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~ 230 (547)
..+.+++.||+|+|||...
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999553
No 374
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=55.38 E-value=4.8 Score=38.65 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=14.0
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..+++.||+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 4799999999999954
No 375
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=55.34 E-value=14 Score=40.15 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=51.6
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcC--------------------------CCcEEEEEEcCCCHHHHHHHh----cCC
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKG--------------------------INVRVVPIVGGMSTEKQERLL----KAR 314 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~--------------------------~~~~v~~~~g~~~~~~~~~~~----~~~ 314 (547)
.++||.+|++.-+..++..+...... .+..+..++|+.....+.... .+.
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 47999999999999998888764321 013466788999887654433 256
Q ss_pred CcEEEeChHHHHHHHhcCCCCcccCCCccEEEE
Q 009003 315 PEVVVGTPGRLWELMSGGEKHLVELHTLSFFVL 347 (547)
Q Consensus 315 ~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lVi 347 (547)
..|||||.- +.. .+++..+.+||-
T Consensus 323 ~~vlvaT~~-----l~~----Gidip~~~~VI~ 346 (702)
T 2p6r_A 323 IKVVVATPT-----LAA----GVNLPARRVIVR 346 (702)
T ss_dssp CCEEEECST-----TTS----SSCCCBSEEEEC
T ss_pred CeEEEECcH-----Hhc----cCCCCceEEEEc
Confidence 899999952 232 378888876553
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=55.29 E-value=5.7 Score=34.87 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=15.8
Q ss_pred cEEEEccCCChhhHHHHHHHHHHHH
Q 009003 215 DVIGAAETGSGKTLAFGLPIMQRLL 239 (547)
Q Consensus 215 dvli~a~TGsGKT~~~~lp~l~~l~ 239 (547)
-+.+++++|||||.. +-+|..++
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 467899999999944 44444443
No 377
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=55.27 E-value=9 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCcEEEEeCCh---------HHHHHHHHHHHHcCCceEEecCCcCH
Q 009003 486 QGRTIVFCTSI---------AALRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 486 ~~k~LVF~~s~---------~~a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
..++||||.+- ..+..++..|...|+++..|.|++..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~ 138 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 138 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHH
Confidence 56899999887 35788899999999999999999653
No 378
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=55.23 E-value=22 Score=40.91 Aligned_cols=52 Identities=6% Similarity=0.128 Sum_probs=45.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHH---cCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 484 HGQGRTIVFCTSIAALRHISSLLKI---LGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 484 ~~~~k~LVF~~s~~~a~~L~~~L~~---~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
..+.++||.++|+.-|.+++..|+. .++.+..+||+++..+|...+..+..+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g 173 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED 173 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998 577999999999998888888877765
No 379
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=55.14 E-value=7.6 Score=39.37 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=17.9
Q ss_pred HHHHHHhcCCcE--EEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKDV--IGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~dv--li~a~TGsGKT~~~ 230 (547)
.+..++ .|.++ ++.|+||||||...
T Consensus 130 lv~~~l-~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSAL-DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHH-CCCceEEEEecCCCCCCeeEe
Confidence 455666 56654 66789999999653
No 380
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=55.08 E-value=7 Score=38.96 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=17.7
Q ss_pred HHHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
.+..++ .|.+ |++.|+||||||...
T Consensus 71 lv~~~l-~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAV-DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhh-cCCceEEEEECCCCCCCeEee
Confidence 445566 5665 456789999999653
No 381
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=55.06 E-value=8 Score=38.37 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=16.3
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~ 229 (547)
+..++ .|.+ |++.|+||||||..
T Consensus 98 v~~~l-~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFL-NGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHT-TTCCEEEEEECCTTSSHHHH
T ss_pred HHHHh-CCCceEEEEeCCCCCCceee
Confidence 34455 4665 46679999999965
No 382
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=54.75 E-value=14 Score=33.85 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=34.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~ 523 (547)
...++||||.+-..+...+..|+..|.++..|.|++...
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~W 221 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHEW 221 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHHH
Confidence 457899999999999999999999998899999997643
No 383
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=54.65 E-value=15 Score=40.00 Aligned_cols=75 Identities=23% Similarity=0.233 Sum_probs=52.1
Q ss_pred eEEEEEccCHHHHHHHHHHHHHhhcC-----------------------------CCcEEEEEEcCCCHHHHHHHh----
Q 009003 265 LRALIITPTRELALQVTDHLKGVAKG-----------------------------INVRVVPIVGGMSTEKQERLL---- 311 (547)
Q Consensus 265 ~~~lil~Ptr~La~qv~~~l~~~~~~-----------------------------~~~~v~~~~g~~~~~~~~~~~---- 311 (547)
.++||.+|++.-+..++..+...... +...+..++|+.....+....
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 57999999999999998888764321 112478889999887664432
Q ss_pred cCCCcEEEeChHHHHHHHhcCCCCcccCCCccEEEEec
Q 009003 312 KARPEVVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 349 (547)
Q Consensus 312 ~~~~dIlv~TP~~l~~~l~~~~~~~~~l~~l~~lViDE 349 (547)
.+...|||||.- +.. .+++..+.+ ||+.
T Consensus 318 ~g~~~vlvaT~~-----l~~----Gvdip~~~~-VI~~ 345 (720)
T 2zj8_A 318 KGIIKAVVATPT-----LSA----GINTPAFRV-IIRD 345 (720)
T ss_dssp TTSSCEEEECST-----TGG----GCCCCBSEE-EECC
T ss_pred CCCCeEEEECcH-----hhc----cCCCCceEE-EEcC
Confidence 246799999942 222 377888766 5553
No 384
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=54.61 E-value=9 Score=37.80 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=16.6
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
+..++ .|.+ |++.|+||||||...
T Consensus 76 v~~~l-~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFF-EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHH-hhcCeeEEEecccCCCceEee
Confidence 34455 4665 466789999999653
No 385
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=54.46 E-value=43 Score=30.50 Aligned_cols=44 Identities=2% Similarity=0.048 Sum_probs=36.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHc----CCceEEecCCcCHHHHHHHH
Q 009003 486 QGRTIVFCTSIAALRHISSLLKIL----GIDVWTLHAQMQQRARLKLF 529 (547)
Q Consensus 486 ~~k~LVF~~s~~~a~~L~~~L~~~----g~~v~~lhg~m~~~eR~~il 529 (547)
..++||.|+++.-+.+++..++.. ++.+..++|+.+...+...+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh
Confidence 567999999999999888777664 88999999999887766544
No 386
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=54.34 E-value=7.9 Score=38.68 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=16.0
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLA 229 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~ 229 (547)
+..++ .|.+ |++.|.||||||..
T Consensus 93 v~~~l-~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVL-NGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHH-HTCCEEEEEECSTTSSHHHH
T ss_pred HHHHh-CCceEEEEeecCCCCCccee
Confidence 33455 4655 46689999999965
No 387
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=53.90 E-value=7.1 Score=35.76 Aligned_cols=20 Identities=25% Similarity=0.077 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCChhhHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~ 231 (547)
.|.-+++.||+|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 46788999999999996543
No 388
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.53 E-value=5.7 Score=35.49 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
..-++++|+.|||||..
T Consensus 18 ~~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SSCEEEECSTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35789999999999954
No 389
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=53.36 E-value=12 Score=35.55 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=32.6
Q ss_pred CCCcEEEEeCChHH-HHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIAA-LRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~~-a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...++||||.+-.. +..++..|+..|+ +|..|.|++...
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W 125 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGW 125 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHH
Confidence 45689999988655 8889999999999 699999987654
No 390
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=53.32 E-value=5.1 Score=35.13 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|..++++|++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466789999999999954
No 391
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=53.27 E-value=7.3 Score=38.57 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=17.8
Q ss_pred HHHHHHhcCCcE--EEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKDV--IGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~dv--li~a~TGsGKT~~~ 230 (547)
.+..++ .|.++ ++.|+||||||...
T Consensus 77 lv~~~l-~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSL-DGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGG-TTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHH-CCcceeEEEeCCCCCCCceEe
Confidence 455556 56664 56799999999664
No 392
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=53.20 E-value=4.5 Score=35.73 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.3
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.-++++||+|||||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4578999999999954
No 393
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=53.12 E-value=12 Score=35.54 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=33.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCHHH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQRA 524 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~~e 524 (547)
...++||||.+-..+...+..|...|+ +|..|.|++....
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~ 269 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWG 269 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC--
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHh
Confidence 457899999998889999999999999 5999999998553
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.10 E-value=8.2 Score=37.33 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|.-+.+.||+|+|||.. +-.|..+
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHH
Confidence 455678999999999944 3344443
No 395
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=52.99 E-value=9.3 Score=34.63 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.1
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..+.+.|++|||||..
T Consensus 5 ~~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 5 APVITIDGPSGAGKGTL 21 (227)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999954
No 396
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=52.92 E-value=16 Score=46.08 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=31.5
Q ss_pred CHHHHHHHHHcCCCCCcHHHHH-HHH--HHHhcCCcEEEEccCCChhhHHHH
Q 009003 183 HPLLMKSIYRLQFKEPTPIQKA-CIP--AAAHQGKDVIGAAETGSGKTLAFG 231 (547)
Q Consensus 183 ~~~l~~~l~~~~~~~~~~iQ~~-~i~--~~l~~~~dvli~a~TGsGKT~~~~ 231 (547)
...+.+.+...++ .+++.+.. ++. .++...+.|+++||||||||.++-
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 3456667777887 45665532 221 122357889999999999997643
No 397
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.91 E-value=11 Score=42.59 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCCeEEEEEccCHHHHHHHHHHHHHhhcCC--------CcEEEEEEcCCCHHHHHHHh---c--CCCcEEEeChHHHHHH
Q 009003 262 KGHLRALIITPTRELALQVTDHLKGVAKGI--------NVRVVPIVGGMSTEKQERLL---K--ARPEVVVGTPGRLWEL 328 (547)
Q Consensus 262 ~~~~~~lil~Ptr~La~qv~~~l~~~~~~~--------~~~v~~~~g~~~~~~~~~~~---~--~~~dIlv~TP~~l~~~ 328 (547)
..+.++||.++++..+..+.+.|....... |.....++|+++...+...+ . +..+|||||- .
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~ 703 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 703 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----c
Confidence 346789999999999999999998752222 33333445556654443322 2 3578999994 2
Q ss_pred HhcCCCCcccCCCccEEEEecc
Q 009003 329 MSGGEKHLVELHTLSFFVLDEA 350 (547)
Q Consensus 329 l~~~~~~~~~l~~l~~lViDEa 350 (547)
+..+ +++..+++||.=.+
T Consensus 704 ~~eG----IDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 704 ADEG----IDIVQCNLVVLYEY 721 (936)
T ss_dssp ----------CCCCSEEEEESC
T ss_pred hhcC----CcchhCCEEEEeCC
Confidence 2333 88999999987444
No 398
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=52.85 E-value=7.4 Score=34.37 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.-|+++|++|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999954
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=52.83 E-value=14 Score=33.12 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.1
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 198 PTPIQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 198 ~~~iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
.++.++.... +..|.-++++|++|||||..
T Consensus 12 ~~~~~r~~~~--~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTELR--NQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHHHH--TSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhccc--CCCCCEEEEECCCCCCHHHH
Confidence 3455555532 24677889999999999954
No 400
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.80 E-value=5.7 Score=36.07 Aligned_cols=18 Identities=33% Similarity=0.126 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+.+.||+|||||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567889999999999954
No 401
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=52.80 E-value=9.4 Score=38.26 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=16.9
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
+..++ .|.+ |++.|.||||||...
T Consensus 127 v~~~l-~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIF-EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHH-TTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHh-cCCceEEEEecCCCCCCCeEe
Confidence 44455 4665 466889999999664
No 402
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=52.78 E-value=8 Score=36.60 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=13.6
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
+.+++.||+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 3499999999999944
No 403
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=52.75 E-value=30 Score=30.46 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=39.9
Q ss_pred CCcEEEEeCC-----------hHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 486 QGRTIVFCTS-----------IAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 486 ~~k~LVF~~s-----------~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
.+.+|||+|. ...++.|...|+.+|+.|.. +.+++..+-.+++.+|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 4567887765 48899999999999999875 678999999999998864
No 404
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=52.48 E-value=5.5 Score=35.03 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++++|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55689999999999954
No 405
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=52.23 E-value=9.8 Score=38.92 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=16.7
Q ss_pred HHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 206 IPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 206 i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
+..++ .|.+ |++.|.||||||...
T Consensus 129 v~~~l-~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNF-EGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhh-cCCceEEEEeCCCCCCCCEEe
Confidence 34455 4665 466789999999653
No 406
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=52.17 E-value=6.4 Score=36.05 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=11.8
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577888999999999944
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=52.04 E-value=8.8 Score=36.65 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCChhhHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~ 230 (547)
..|.-+++.||+|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 36888999999999999543
No 408
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=51.96 E-value=9.9 Score=40.03 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHhh
Q 009003 477 LYYILSVHGQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMITW 535 (547)
Q Consensus 477 l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~~ 535 (547)
|..++. ..++++||||+|...++.++..|.. +. ...++.. .+|.+++++|+++
T Consensus 376 l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~ 428 (540)
T 2vl7_A 376 LKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG 428 (540)
T ss_dssp HHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS
T ss_pred HHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC
Confidence 344443 3578999999999999999988865 33 3456654 5789999999874
No 409
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=51.74 E-value=27 Score=33.59 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=41.4
Q ss_pred CCcEEEEeCC-----------hHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 486 QGRTIVFCTS-----------IAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 486 ~~k~LVF~~s-----------~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
.+-+|||+|. ...++.|...|+.+|+.|.. |.+++..+-.+++.+|..
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 3568999988 67899999999999999865 678999999999999965
No 410
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=51.71 E-value=14 Score=29.97 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=31.0
Q ss_pred cEEEEeCChHHHHHHHHHHHHc------CC-ceEEecCCcCHHH
Q 009003 488 RTIVFCTSIAALRHISSLLKIL------GI-DVWTLHAQMQQRA 524 (547)
Q Consensus 488 k~LVF~~s~~~a~~L~~~L~~~------g~-~v~~lhg~m~~~e 524 (547)
+++|||.+-..+...+..|... |+ +|..|.|++....
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~ 117 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWA 117 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHH
Confidence 8999999988888888999888 34 7999999987554
No 411
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=51.67 E-value=11 Score=40.21 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=18.3
Q ss_pred HHHhcCCcEEEEccCCChhhHH
Q 009003 208 AAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 208 ~~l~~~~dvli~a~TGsGKT~~ 229 (547)
..+..+..+++.||+|+|||..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3445789999999999999954
No 412
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=51.65 E-value=6 Score=37.93 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.1
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++++||+|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999954
No 413
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=51.51 E-value=9.6 Score=34.30 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=15.9
Q ss_pred CcEEEEccCCChhhHHHHHHHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.-.+|.||+|+|||.. +-++..+
T Consensus 24 ~~~~I~G~NgsGKSti--l~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL--LDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CeEEEEcCCCCCHHHH--HHHHHHH
Confidence 3568899999999954 3344443
No 414
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=51.46 E-value=7.8 Score=38.89 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=15.8
Q ss_pred HHHhcCCc--EEEEccCCChhhHHH
Q 009003 208 AAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 208 ~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
.++ .|.+ |++.|+||||||...
T Consensus 93 ~~l-~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLL-EGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHT-TTCCEEEEEESCTTSSHHHHH
T ss_pred Hhh-cCceeeEeeecCCCCCCCeEe
Confidence 445 4665 456899999999653
No 415
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=51.27 E-value=30 Score=29.98 Aligned_cols=38 Identities=5% Similarity=0.065 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 496 IAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 496 ~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
...++.|...|..+|+.|.+ |.+++..+-.+++..|..
T Consensus 54 ~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHH
Confidence 57888999999999999865 678999998888888854
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=51.20 E-value=7.4 Score=36.10 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578889999999999943
No 417
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=50.88 E-value=8.4 Score=33.25 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.1
Q ss_pred hcCCcEEEEccCCChhhH
Q 009003 211 HQGKDVIGAAETGSGKTL 228 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~ 228 (547)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457778899999999993
No 418
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=50.88 E-value=21 Score=34.72 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCceEEecCCcCH
Q 009003 470 EEDKDAYLYYILSVH--GQGRTIVFCTSIAALRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 470 ~~~k~~~l~~ll~~~--~~~k~LVF~~s~~~a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
...|+.+|..++... .+.++|||++..+....|-.+|...|+.+.-+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK 161 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh
Confidence 567888888888743 46799999999999999999999999999999998554
No 419
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=50.64 E-value=14 Score=34.75 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=33.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCC-ceEEecCCcCH
Q 009003 485 GQGRTIVFCTSIAALRHISSLLKILGI-DVWTLHAQMQQ 522 (547)
Q Consensus 485 ~~~k~LVF~~s~~~a~~L~~~L~~~g~-~v~~lhg~m~~ 522 (547)
...++||||.+-..+...+..|...|+ +|..|.|++..
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 260 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGE 260 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 467899999998888899999999999 59999998764
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=50.55 E-value=11 Score=35.39 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|..+++.|++|||||..
T Consensus 47 ~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TTCCEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 389999999999999955
No 421
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=50.49 E-value=8.1 Score=39.58 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=28.9
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHH-HHHHHHhcCCcEEEEccCCChhhHH
Q 009003 174 FDAWNELRLHPLLMKSIYRLQFKEPTPIQKA-CIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 174 ~~~f~~l~l~~~l~~~l~~~~~~~~~~iQ~~-~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
...|.++.-...+.+.|...-. .|++.. .+.......+.+|+.||+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 4567777666666666654210 000000 0000012347899999999999954
No 422
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=50.33 E-value=21 Score=30.33 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCcEEEEeC--------------ChHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 486 QGRTIVFCT--------------SIAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 486 ~~k~LVF~~--------------s~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
.|.+|||.+ |...++.|...|+.+|+.|.+ |.+++..+-.+.+.+|..
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 77 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSK 77 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHH
Confidence 466777766 445889999999999999776 567999998898888865
No 423
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=50.17 E-value=12 Score=35.87 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=13.4
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.++++||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999954
No 424
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=50.13 E-value=7 Score=34.31 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChhhHHH
Q 009003 213 GKDVIGAAETGSGKTLAF 230 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~ 230 (547)
+.-|+++|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999553
No 425
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=50.08 E-value=7.2 Score=35.62 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++|++|||||..
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 456799999999999954
No 426
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=49.95 E-value=10 Score=33.04 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|..++++|+.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999954
No 427
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=49.85 E-value=6.7 Score=39.07 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.3
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
-.+|+||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5679999999999553
No 428
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=49.81 E-value=15 Score=32.05 Aligned_cols=15 Identities=27% Similarity=-0.044 Sum_probs=12.6
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-+.++|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999953
No 429
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=49.68 E-value=23 Score=33.47 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHHHHHHh---cCCCcEEEEeCChHHHHHHHHHHH-HcCC-ceEEecCCcCH
Q 009003 476 YLYYILSV---HGQGRTIVFCTSIAALRHISSLLK-ILGI-DVWTLHAQMQQ 522 (547)
Q Consensus 476 ~l~~ll~~---~~~~k~LVF~~s~~~a~~L~~~L~-~~g~-~v~~lhg~m~~ 522 (547)
.|...+.. ....++||||.+-..+...+..|. ..|+ +|..|.|++..
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~ 271 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTE 271 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHH
Confidence 34444443 245689999999888889999999 8999 69999998763
No 430
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=49.68 E-value=12 Score=39.06 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+++.|++|+|||..
T Consensus 241 ~G~l~li~G~pG~GKT~l 258 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTF 258 (503)
T ss_dssp TTCEEEEEESSCHHHHHH
T ss_pred CCeEEEEeecCCCCchHH
Confidence 567789999999999954
No 431
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.67 E-value=7.6 Score=34.51 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.-++++|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467899999999999954
No 432
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.59 E-value=9.1 Score=48.78 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 203 KACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 203 ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
...+..++..++.|+++||||+|||..
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 345566667899999999999999943
No 433
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=49.48 E-value=11 Score=32.87 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.8
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-|+++|+.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999954
No 434
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.47 E-value=8.4 Score=33.66 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.8
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..|+++|++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999954
No 435
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=49.46 E-value=38 Score=29.79 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=40.5
Q ss_pred CCCcEEEEeCCh--------------HHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 485 GQGRTIVFCTSI--------------AALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 485 ~~~k~LVF~~s~--------------~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
+.|.+|||++.. ..++.|...|+.+|+.|.++ -+++..+-.+.+.+|..
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVST 105 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHT
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhh
Confidence 467889998752 57899999999999998765 68999998888888854
No 436
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=49.39 E-value=8.7 Score=35.06 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3688899999999999943
No 437
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=49.22 E-value=12 Score=35.98 Aligned_cols=15 Identities=27% Similarity=0.405 Sum_probs=12.4
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
-|.|+|++|||||..
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999944
No 438
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.11 E-value=8.3 Score=36.35 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3688899999999999943
No 439
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=48.93 E-value=8.2 Score=33.47 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.3
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+++++++|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 689999999999954
No 440
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=48.88 E-value=12 Score=32.96 Aligned_cols=16 Identities=38% Similarity=0.233 Sum_probs=13.1
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.-++++|++|||||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 4578999999999943
No 441
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=48.81 E-value=1.6e+02 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCc
Q 009003 473 KDAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID 512 (547)
Q Consensus 473 k~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~ 512 (547)
-...+..++... +...-|||.+-..|..+...|+..|+.
T Consensus 173 ~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 173 GRDGAIKVLTGA-DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp CHHHHHHHHTC--CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 345566666543 567889999999999999999988764
No 442
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=48.64 E-value=11 Score=32.90 Aligned_cols=18 Identities=39% Similarity=0.329 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++|+.|||||..
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999954
No 443
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=48.62 E-value=8.4 Score=35.48 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678889999999999943
No 444
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.55 E-value=8.2 Score=36.78 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578889999999999943
No 445
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=48.37 E-value=1.4e+02 Score=26.11 Aligned_cols=66 Identities=15% Similarity=-0.011 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCeEEEEEccCHHHHHHHHHHHHHh
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRLLEEREKAAKMLEDKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKGV 287 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Ptr~La~qv~~~l~~~ 287 (547)
.|..+-+.+..|-|=|+.+.+|+...-.... ...........+.++|||-........+...|...
T Consensus 19 hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~----------~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 19 HMASTDSESETRVKSVRTGRKPIGNPEDEQE----------TSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp ----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred cCCceeeeccCCCcceeeeccCCCCCccccc----------ccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3678888999999999999999643211110 00011122344568999988877776666666654
No 446
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.35 E-value=8.5 Score=34.88 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..+++.|++|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999954
No 447
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=48.34 E-value=25 Score=33.10 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=31.5
Q ss_pred CCCcEEEEeCCh-HHHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSI-AALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~-~~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...++||||.+- ..+..++..|+..|+ +|..|.|++...
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W 116 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 116 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHH
Confidence 456889999874 457788899999999 799999987644
No 448
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=48.20 E-value=30 Score=36.60 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=49.7
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhc----CCCcEEEEEEcCCCHHH--HHHHhcC-CCc---EEEeChHHHHHHHhcCC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAK----GINVRVVPIVGGMSTEK--QERLLKA-RPE---VVVGTPGRLWELMSGGE 333 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~----~~~~~v~~~~g~~~~~~--~~~~~~~-~~d---Ilv~TP~~l~~~l~~~~ 333 (547)
+.++||+|+++.-|..+++.|..... ..+-.+..++|...... ....+.+ ..+ |+|||. ++..
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~-- 511 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTT-- 511 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTT--
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhc--
Confidence 46899999999999999999987632 12223556667654311 1223333 223 677762 2233
Q ss_pred CCcccCCCccEEEEecc
Q 009003 334 KHLVELHTLSFFVLDEA 350 (547)
Q Consensus 334 ~~~~~l~~l~~lViDEa 350 (547)
.+++..+.+||++..
T Consensus 512 --GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 --GVDAPTCKNVVLARV 526 (590)
T ss_dssp --TCCCTTEEEEEEESC
T ss_pred --CccchheeEEEEEec
Confidence 388999999998654
No 449
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.19 E-value=8.3 Score=35.37 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.4
Q ss_pred hcCCcEEEEccCCChhhH
Q 009003 211 HQGKDVIGAAETGSGKTL 228 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~ 228 (547)
..|.-+.+.||+|||||.
T Consensus 28 ~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKST 45 (224)
T ss_dssp ETTCEEEEEECTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 357788899999999994
No 450
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=48.08 E-value=11 Score=36.63 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|.-+.|.||+|||||.. +-+|..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL--~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTT--ARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCEEEEEECCCCchHHHH--HHHHHhh
Confidence 455677999999999943 4444444
No 451
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=47.97 E-value=9.2 Score=32.85 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.-+++++.|+.|||||..
T Consensus 6 ~~~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSL 23 (168)
T ss_dssp --CEEEEESCTTSSHHHH
T ss_pred ccceEEEECCCCCCHHHH
Confidence 346899999999999965
No 452
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=47.96 E-value=1.9e+02 Score=27.53 Aligned_cols=38 Identities=11% Similarity=-0.016 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCc
Q 009003 474 DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID 512 (547)
Q Consensus 474 ~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~ 512 (547)
...+..+|..+ +....|||.+-..|.-+...|+..|+.
T Consensus 193 ~~~~~~~L~~~-~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 193 YRQAQQLLKRY-PKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHHHC-TTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhC-CCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 34566677665 467889999999999999999998865
No 453
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=47.52 E-value=11 Score=37.44 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=17.2
Q ss_pred CCcEEEEccCCChhhHHHHHHHHHHHH
Q 009003 213 GKDVIGAAETGSGKTLAFGLPIMQRLL 239 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~~~lp~l~~l~ 239 (547)
|.-+.++||+|+|||.. +-.|..++
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 45678999999999944 33444443
No 454
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=47.45 E-value=8.8 Score=35.53 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..++++||+|||||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 457889999999999954
No 455
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=47.42 E-value=8.7 Score=35.87 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..+..+.+.||+|||||..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TTSCEEEEECCTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3567788999999999954
No 456
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=47.42 E-value=9 Score=35.79 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578889999999999943
No 457
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=47.39 E-value=16 Score=35.30 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=14.2
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.|.-+.+.|++|||||..
T Consensus 79 ~g~iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTT 96 (308)
T ss_dssp CCEEEEEEECTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 445677899999999943
No 458
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=47.26 E-value=7.6 Score=41.50 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=13.7
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
++|+.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999954
No 459
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=47.18 E-value=23 Score=33.20 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=31.8
Q ss_pred CCCcEEEEeCChH-HHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIA-ALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~-~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...++||||.+-. .+..++..|+..|+ +|..+.|++...
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w 120 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAW 120 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHH
Confidence 4568888998765 78889999999999 588999987643
No 460
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.17 E-value=1.1e+02 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCc
Q 009003 474 DAYLYYILSVHGQGRTIVFCTSIAALRHISSLLKILGID 512 (547)
Q Consensus 474 ~~~l~~ll~~~~~~k~LVF~~s~~~a~~L~~~L~~~g~~ 512 (547)
...+..++..+ +...-|||.+-..|..+...|+..|+.
T Consensus 180 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 180 QQAVEELMGLQ-QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCC-CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 44556666543 467889999999999999999998764
No 461
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=47.16 E-value=7.3 Score=35.12 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.3
Q ss_pred ccEEEEeccchhh
Q 009003 342 LSFFVLDEADRMI 354 (547)
Q Consensus 342 l~~lViDEah~ll 354 (547)
-.+|||||||.++
T Consensus 88 ~~vliIDEAq~l~ 100 (199)
T 2r2a_A 88 GSIVIVDEAQDVW 100 (199)
T ss_dssp TCEEEETTGGGTS
T ss_pred ceEEEEEChhhhc
Confidence 4689999999985
No 462
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.08 E-value=9.1 Score=39.19 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
.+++++.||+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999954
No 463
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=47.07 E-value=7.9 Score=36.03 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999943
No 464
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=47.04 E-value=9.1 Score=35.95 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 4678889999999999943
No 465
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.93 E-value=11 Score=37.47 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=15.7
Q ss_pred CcEEEEccCCChhhHHHHHHHHHH
Q 009003 214 KDVIGAAETGSGKTLAFGLPIMQR 237 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~~~lp~l~~ 237 (547)
.-.+++|+||+|||.. +=++..
T Consensus 26 gl~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHH--HHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHH
Confidence 3468999999999954 444444
No 466
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=46.83 E-value=9.4 Score=33.97 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.3
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+..|+++|++|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999954
No 467
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.82 E-value=9.3 Score=34.38 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=13.0
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999954
No 468
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=46.79 E-value=9.2 Score=36.20 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578889999999999943
No 469
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=46.79 E-value=9.4 Score=34.63 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+..+++.|++|||||..
T Consensus 4 ~~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQ 21 (222)
T ss_dssp CSCCEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356799999999999954
No 470
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=46.66 E-value=13 Score=32.89 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=12.8
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+++.|++|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999954
No 471
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=46.61 E-value=14 Score=35.82 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCChhhHH
Q 009003 201 IQKACIPAAAHQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 201 iQ~~~i~~~l~~~~dvli~a~TGsGKT~~ 229 (547)
-+...+..++..+..++|.|+.|+|||..
T Consensus 19 ~el~~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 19 EESRKLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCcCCHHHH
Confidence 33444444444568899999999999944
No 472
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=46.39 E-value=9.6 Score=32.75 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.7
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
..++++|++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999954
No 473
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.25 E-value=15 Score=37.78 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
...++|+.||+|+|||..
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 356899999999999965
No 474
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=46.25 E-value=9.7 Score=35.90 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577888999999999943
No 475
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=46.17 E-value=9.5 Score=33.34 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=13.6
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.-++++|++|||||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578999999999954
No 476
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.03 E-value=9.7 Score=35.33 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577888999999999943
No 477
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=45.97 E-value=13 Score=36.43 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCChhhHHHHHHHHHHH
Q 009003 212 QGKDVIGAAETGSGKTLAFGLPIMQRL 238 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~~~lp~l~~l 238 (547)
.|.-+.++||+|+|||.. +..|..+
T Consensus 128 ~g~vi~lvG~nGaGKTTl--l~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT--IAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHH
Confidence 466788999999999943 4444444
No 478
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=45.30 E-value=9.2 Score=34.01 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.6
Q ss_pred CcEEEEccCCChhhHH
Q 009003 214 KDVIGAAETGSGKTLA 229 (547)
Q Consensus 214 ~dvli~a~TGsGKT~~ 229 (547)
.-|+++|+.|||||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688999999999954
No 479
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=45.26 E-value=8 Score=37.47 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.4
Q ss_pred hcCCcEEEEccCCChhhHHHHHHHHH
Q 009003 211 HQGKDVIGAAETGSGKTLAFGLPIMQ 236 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~~~lp~l~ 236 (547)
..|.-+.++||+|||||. ++-+|.
T Consensus 78 ~~Ge~vaivG~sGsGKST--Ll~ll~ 101 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKST--ILRLLF 101 (306)
T ss_dssp CTTCEEEEESSSCHHHHH--HHHHHT
T ss_pred cCCCEEEEECCCCchHHH--HHHHHH
Confidence 468889999999999994 444443
No 480
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=45.15 E-value=9.3 Score=34.17 Aligned_cols=18 Identities=28% Similarity=0.039 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.-+.++|++|||||..
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355678999999999954
No 481
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.15 E-value=10 Score=34.13 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=13.0
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.++++|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999954
No 482
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.01 E-value=10 Score=35.56 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3577889999999999943
No 483
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=44.95 E-value=9.1 Score=35.90 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=14.3
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-|+++|++|||||..
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 45689999999999954
No 484
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=44.91 E-value=24 Score=34.16 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHHhc---CCCcEEEEeCChH-HHHHHHHHHHHcCC-ceEEecCCcCH
Q 009003 476 YLYYILSVH---GQGRTIVFCTSIA-ALRHISSLLKILGI-DVWTLHAQMQQ 522 (547)
Q Consensus 476 ~l~~ll~~~---~~~k~LVF~~s~~-~a~~L~~~L~~~g~-~v~~lhg~m~~ 522 (547)
.+...+... ...++||||.+-. .+..++..|+..|+ +|..|.|++..
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~ 149 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDL 149 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHHH
Confidence 344444442 4578999998765 78889999999999 59999998764
No 485
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=44.75 E-value=12 Score=30.86 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCcEEEEeCChHH---------HHHHHHHHHHcCCceEEecCCcCH
Q 009003 486 QGRTIVFCTSIAA---------LRHISSLLKILGIDVWTLHAQMQQ 522 (547)
Q Consensus 486 ~~k~LVF~~s~~~---------a~~L~~~L~~~g~~v~~lhg~m~~ 522 (547)
..++||||.+-.. +..++..|...|++|..|.|++..
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~~ 128 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 128 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHHH
Confidence 3679999988654 356788899999999999998763
No 486
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=44.74 E-value=9.2 Score=34.05 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=12.9
Q ss_pred cEEEEccCCChhhHH
Q 009003 215 DVIGAAETGSGKTLA 229 (547)
Q Consensus 215 dvli~a~TGsGKT~~ 229 (547)
.+.++|++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999954
No 487
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=44.61 E-value=11 Score=35.69 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCccEEEEeccchhhhcCChHHHHHHHHhC
Q 009003 339 LHTLSFFVLDEADRMIENGHFRELQSIIDML 369 (547)
Q Consensus 339 l~~l~~lViDEah~ll~~~~~~~l~~i~~~l 369 (547)
+.+-+++++||.-.-+|......+..++..+
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 4555788888888877776666676666655
No 488
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=44.56 E-value=9.6 Score=34.03 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.-|+++|+.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 467789999999999954
No 489
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=44.51 E-value=20 Score=41.18 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=51.1
Q ss_pred CeEEEEEccCHHHHHHHHHHHHHhhcCCCcEEEEEEcCCCHHHHHHHhcCCCcEEEeC---hHHHHHHHhcCCCCcccCC
Q 009003 264 HLRALIITPTRELALQVTDHLKGVAKGINVRVVPIVGGMSTEKQERLLKARPEVVVGT---PGRLWELMSGGEKHLVELH 340 (547)
Q Consensus 264 ~~~~lil~Ptr~La~qv~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~dIlv~T---P~~l~~~l~~~~~~~~~l~ 340 (547)
+.++||.|+|+..|..+++.|... +++..++|+... .......+..+||||| -.. +..+ +++.
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~~-~l~~F~~G~~~VLVaTas~Tdv----~~rG----IDip 340 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKG-DYEKFVEGEIDHLIGTAHYYGT----LVRG----LDLP 340 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSH-HHHHHHHTSCSEEEEECC----------CC----SCCT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHHH-HHHHHHcCCCcEEEEecCCCCe----eEec----cccC
Confidence 457999999999998888777654 778888998753 2223334678999994 222 2333 8899
Q ss_pred Cc-cEEEEeccc
Q 009003 341 TL-SFFVLDEAD 351 (547)
Q Consensus 341 ~l-~~lViDEah 351 (547)
.+ ++||.=.+-
T Consensus 341 ~VI~~VI~~~~P 352 (1054)
T 1gku_B 341 ERIRFAVFVGCP 352 (1054)
T ss_dssp TTCCEEEEESCC
T ss_pred CcccEEEEeCCC
Confidence 94 988876555
No 490
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=44.50 E-value=11 Score=35.81 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688889999999999943
No 491
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.48 E-value=17 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.++-+++++++|+|||..
T Consensus 104 ~~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp SCEEEEEESSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678899999999954
No 492
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=44.43 E-value=11 Score=35.64 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 3577889999999999943
No 493
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=44.43 E-value=11 Score=35.36 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCChhhHH
Q 009003 211 HQGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 211 ~~~~dvli~a~TGsGKT~~ 229 (547)
..|.-+.+.||+|||||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577889999999999943
No 494
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=44.41 E-value=9 Score=34.14 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.-|+++|+.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 356789999999999954
No 495
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=44.35 E-value=9.7 Score=37.61 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=17.2
Q ss_pred HHHHHHhcCCc--EEEEccCCChhhHHH
Q 009003 205 CIPAAAHQGKD--VIGAAETGSGKTLAF 230 (547)
Q Consensus 205 ~i~~~l~~~~d--vli~a~TGsGKT~~~ 230 (547)
.+..++ .|.+ |++.|+||||||...
T Consensus 76 lv~~~l-~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSL-DGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGG-GTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhc-CCceeEEEEECCCCCCCcEec
Confidence 344455 4665 466899999999653
No 496
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=44.10 E-value=20 Score=33.93 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=31.9
Q ss_pred CCCcEEEEeCChH-HHHHHHHHHHHcCC-ceEEecCCcCHH
Q 009003 485 GQGRTIVFCTSIA-ALRHISSLLKILGI-DVWTLHAQMQQR 523 (547)
Q Consensus 485 ~~~k~LVF~~s~~-~a~~L~~~L~~~g~-~v~~lhg~m~~~ 523 (547)
...++||||.+-. .+..++..|+..|+ +|..|.|++...
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W 118 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKW 118 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHH
Confidence 4568899998865 67889999999999 599999987644
No 497
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=44.09 E-value=8.6 Score=33.43 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=10.7
Q ss_pred CCcEEEEccCCChhhHH
Q 009003 213 GKDVIGAAETGSGKTLA 229 (547)
Q Consensus 213 ~~dvli~a~TGsGKT~~ 229 (547)
+.-++++|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999954
No 498
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=43.92 E-value=18 Score=33.31 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=13.8
Q ss_pred cEEEEccCCChhhHHH
Q 009003 215 DVIGAAETGSGKTLAF 230 (547)
Q Consensus 215 dvli~a~TGsGKT~~~ 230 (547)
++++.++.|+|||...
T Consensus 8 ~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5889999999999664
No 499
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=43.78 E-value=41 Score=31.89 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=40.9
Q ss_pred CCCcEEEEeCC--------------hHHHHHHHHHHHHcCCceEEecCCcCHHHHHHHHHHHHh
Q 009003 485 GQGRTIVFCTS--------------IAALRHISSLLKILGIDVWTLHAQMQQRARLKLFSQMIT 534 (547)
Q Consensus 485 ~~~k~LVF~~s--------------~~~a~~L~~~L~~~g~~v~~lhg~m~~~eR~~il~~F~~ 534 (547)
+.|-+|||+|. ...++.|...|+.+|+.|.+ +.+++..+-.+++.+|..
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC-FNDLKAEELLLKIHEVST 82 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 45778998875 37899999999999999875 578999999999998853
No 500
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=43.76 E-value=10 Score=33.89 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCChhhHH
Q 009003 212 QGKDVIGAAETGSGKTLA 229 (547)
Q Consensus 212 ~~~dvli~a~TGsGKT~~ 229 (547)
.+.-|+++|+.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 577899999999999954
Done!