Query 009004
Match_columns 547
No_of_seqs 307 out of 3783
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 19:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 2.5E-28 5.5E-33 222.3 9.0 325 142-492 127-458 (483)
2 KOG4341 F-box protein containi 99.9 5.7E-28 1.2E-32 220.0 11.1 317 127-472 138-462 (483)
3 PLN00113 leucine-rich repeat r 99.9 8E-23 1.7E-27 226.4 14.7 83 3-99 139-222 (968)
4 PLN00113 leucine-rich repeat r 99.9 3.7E-22 7.9E-27 221.2 17.3 401 4-473 69-486 (968)
5 KOG4194 Membrane glycoprotein 99.9 3.8E-23 8.1E-28 196.0 0.6 396 3-472 77-477 (873)
6 KOG4194 Membrane glycoprotein 99.9 2.1E-22 4.6E-27 191.0 4.1 343 62-473 79-427 (873)
7 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-16 2.8E-21 154.2 24.1 167 296-472 137-317 (319)
8 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-14 4.6E-19 138.7 24.1 252 210-473 14-289 (319)
9 KOG2120 SCF ubiquitin ligase, 99.7 3.8E-16 8.3E-21 136.9 10.0 255 219-493 136-394 (419)
10 KOG1909 Ran GTPase-activating 99.6 5.7E-15 1.2E-19 132.8 13.5 208 269-486 90-325 (382)
11 PLN03210 Resistant to P. syrin 99.6 1.2E-14 2.6E-19 161.7 14.4 129 296-449 778-907 (1153)
12 KOG0444 Cytoskeletal regulator 99.6 7.9E-17 1.7E-21 154.8 -4.0 364 3-448 6-375 (1255)
13 KOG2120 SCF ubiquitin ligase, 99.6 5.8E-15 1.3E-19 129.6 7.4 148 218-369 233-383 (419)
14 KOG1909 Ran GTPase-activating 99.6 5.8E-14 1.3E-18 126.4 13.5 161 294-465 155-328 (382)
15 PLN03210 Resistant to P. syrin 99.6 3.3E-14 7.2E-19 158.2 14.5 311 88-473 588-904 (1153)
16 KOG1947 Leucine rich repeat pr 99.5 2.1E-13 4.5E-18 140.0 13.3 207 217-458 241-450 (482)
17 KOG0444 Cytoskeletal regulator 99.5 1.7E-15 3.7E-20 145.8 -4.1 225 126-388 149-375 (1255)
18 KOG1947 Leucine rich repeat pr 99.5 3.7E-13 8E-18 138.2 12.3 255 205-473 174-438 (482)
19 KOG0618 Serine/threonine phosp 99.5 2E-14 4.4E-19 144.6 2.2 126 298-447 361-488 (1081)
20 KOG0618 Serine/threonine phosp 99.3 7.7E-14 1.7E-18 140.6 -2.3 198 245-473 241-487 (1081)
21 COG5238 RNA1 Ran GTPase-activa 99.3 2.5E-11 5.4E-16 105.7 11.5 172 291-473 87-283 (388)
22 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.6E-16 113.2 1.1 209 125-356 119-335 (505)
23 KOG3207 Beta-tubulin folding c 99.1 5.1E-11 1.1E-15 110.8 1.9 61 219-280 121-181 (505)
24 KOG0472 Leucine-rich repeat pr 99.0 2.4E-11 5.2E-16 111.6 -4.1 37 433-473 503-539 (565)
25 PRK15387 E3 ubiquitin-protein 98.9 2.1E-09 4.6E-14 111.8 8.1 244 127-456 222-465 (788)
26 COG5238 RNA1 Ran GTPase-activa 98.9 5.6E-08 1.2E-12 85.2 15.3 214 270-493 29-279 (388)
27 KOG0472 Leucine-rich repeat pr 98.9 7.3E-11 1.6E-15 108.4 -3.6 106 317-449 431-541 (565)
28 KOG3665 ZYG-1-like serine/thre 98.9 6.2E-09 1.3E-13 107.9 9.6 214 126-355 59-283 (699)
29 PRK15387 E3 ubiquitin-protein 98.8 7.4E-09 1.6E-13 107.9 6.8 111 5-162 202-312 (788)
30 KOG2982 Uncharacterized conser 98.8 1.4E-09 3.1E-14 96.2 0.1 209 266-494 66-287 (418)
31 KOG4237 Extracellular matrix p 98.8 6.3E-10 1.4E-14 102.2 -2.4 243 201-473 77-357 (498)
32 KOG3665 ZYG-1-like serine/thre 98.7 4.9E-08 1.1E-12 101.4 10.2 157 296-468 122-281 (699)
33 PRK15370 E3 ubiquitin-protein 98.6 2.1E-07 4.6E-12 97.7 10.2 32 127-162 199-230 (754)
34 PRK15370 E3 ubiquitin-protein 98.6 1.3E-07 2.8E-12 99.2 8.3 162 272-473 263-426 (754)
35 KOG4237 Extracellular matrix p 98.5 1E-08 2.3E-13 94.4 -1.7 269 123-423 87-368 (498)
36 KOG1259 Nischarin, modulator o 98.5 9.4E-08 2E-12 85.0 4.1 244 211-490 174-434 (490)
37 PF14580 LRR_9: Leucine-rich r 98.4 2.8E-08 6.1E-13 84.4 -2.1 128 321-471 19-149 (175)
38 KOG3864 Uncharacterized conser 98.3 7.4E-07 1.6E-11 75.0 4.8 104 376-491 102-209 (221)
39 KOG2982 Uncharacterized conser 98.3 8.3E-07 1.8E-11 79.1 4.2 190 211-412 63-260 (418)
40 KOG1259 Nischarin, modulator o 98.1 4.9E-07 1.1E-11 80.6 0.1 126 294-446 282-410 (490)
41 PF14580 LRR_9: Leucine-rich r 98.1 2.8E-06 6E-11 72.3 3.9 128 219-355 19-148 (175)
42 KOG3864 Uncharacterized conser 98.1 4.2E-06 9.1E-11 70.6 4.1 87 322-413 102-188 (221)
43 KOG4308 LRR-containing protein 97.9 6.7E-06 1.4E-10 82.0 3.6 315 129-473 89-443 (478)
44 KOG4658 Apoptotic ATPase [Sign 97.8 1E-05 2.2E-10 86.7 3.5 233 124-389 542-784 (889)
45 PF13855 LRR_8: Leucine rich r 97.8 3.7E-06 8.1E-11 58.3 -0.2 58 272-331 2-59 (61)
46 KOG4658 Apoptotic ATPase [Sign 97.7 1.7E-05 3.6E-10 85.1 3.1 234 217-473 543-781 (889)
47 PF13855 LRR_8: Leucine rich r 97.7 9.6E-06 2.1E-10 56.2 0.4 60 296-358 1-60 (61)
48 KOG1859 Leucine-rich repeat pr 97.7 2.9E-06 6.2E-11 84.8 -3.3 173 218-412 108-290 (1096)
49 KOG1859 Leucine-rich repeat pr 97.6 6.7E-06 1.5E-10 82.2 -2.2 201 144-386 76-290 (1096)
50 KOG0617 Ras suppressor protein 97.5 9.5E-07 2.1E-11 72.1 -8.2 148 272-446 34-184 (264)
51 KOG4308 LRR-containing protein 97.3 0.00021 4.5E-09 71.5 4.6 321 123-473 111-471 (478)
52 KOG0617 Ras suppressor protein 97.1 8E-06 1.7E-10 66.8 -6.4 61 123-193 98-158 (264)
53 PRK15386 type III secretion pr 97.1 0.00098 2.1E-08 64.3 5.6 55 218-283 51-106 (426)
54 KOG2123 Uncharacterized conser 96.8 0.00033 7E-09 62.4 -0.1 113 295-421 18-134 (388)
55 smart00367 LRR_CC Leucine-rich 96.7 0.0021 4.5E-08 35.4 3.1 23 401-423 2-24 (26)
56 PF12799 LRR_4: Leucine Rich r 96.6 0.0035 7.5E-08 39.7 3.8 38 296-335 1-38 (44)
57 KOG2739 Leucine-rich acidic nu 96.6 0.00074 1.6E-08 59.9 0.8 109 346-473 42-154 (260)
58 PLN03150 hypothetical protein; 96.6 0.004 8.7E-08 65.4 6.3 106 298-414 420-528 (623)
59 smart00367 LRR_CC Leucine-rich 96.5 0.0033 7.2E-08 34.5 2.9 25 434-458 1-25 (26)
60 PLN03150 hypothetical protein; 96.5 0.0054 1.2E-07 64.5 6.5 108 322-449 419-529 (623)
61 PRK15386 type III secretion pr 96.4 0.0072 1.6E-07 58.5 6.3 138 269-446 50-188 (426)
62 COG4886 Leucine-rich repeat (L 96.3 0.0035 7.6E-08 62.4 3.7 145 272-446 141-288 (394)
63 KOG2739 Leucine-rich acidic nu 96.2 0.001 2.3E-08 58.9 -0.3 64 346-412 64-127 (260)
64 COG4886 Leucine-rich repeat (L 95.9 0.0087 1.9E-07 59.6 4.7 171 271-473 116-288 (394)
65 KOG1644 U2-associated snRNP A' 95.8 0.0075 1.6E-07 51.4 2.7 10 400-409 139-148 (233)
66 KOG2123 Uncharacterized conser 95.7 0.0032 6.9E-08 56.3 0.3 116 320-455 18-134 (388)
67 KOG1644 U2-associated snRNP A' 95.7 0.0057 1.2E-07 52.1 1.8 40 433-473 111-151 (233)
68 PF12799 LRR_4: Leucine Rich r 95.5 0.014 3E-07 36.9 2.5 14 433-446 22-35 (44)
69 KOG0531 Protein phosphatase 1, 95.2 0.0027 5.8E-08 63.5 -2.2 78 270-357 94-172 (414)
70 KOG0531 Protein phosphatase 1, 94.9 0.0033 7.2E-08 62.8 -2.5 215 216-473 92-316 (414)
71 KOG4579 Leucine-rich repeat (L 94.7 0.012 2.7E-07 46.8 0.9 38 294-333 75-112 (177)
72 PF13516 LRR_6: Leucine Rich r 93.7 0.065 1.4E-06 28.6 2.2 21 321-341 2-22 (24)
73 PF13516 LRR_6: Leucine Rich r 93.2 0.073 1.6E-06 28.4 1.8 16 437-453 4-19 (24)
74 KOG4579 Leucine-rich repeat (L 92.7 0.031 6.7E-07 44.6 -0.2 62 292-357 49-110 (177)
75 KOG3763 mRNA export factor TAP 88.4 1.1 2.4E-05 44.7 6.1 86 397-493 214-308 (585)
76 smart00368 LRR_RI Leucine rich 87.7 0.79 1.7E-05 25.5 2.8 23 321-343 2-24 (28)
77 KOG0532 Leucine-rich repeat (L 87.4 0.094 2E-06 52.2 -1.8 124 272-412 122-245 (722)
78 PF13306 LRR_5: Leucine rich r 86.5 0.17 3.7E-06 41.0 -0.5 10 319-328 56-65 (129)
79 smart00368 LRR_RI Leucine rich 86.4 0.88 1.9E-05 25.3 2.5 25 127-151 2-26 (28)
80 KOG0532 Leucine-rich repeat (L 82.0 0.15 3.3E-06 50.8 -3.0 154 291-472 116-270 (722)
81 PF13504 LRR_7: Leucine rich r 81.9 1.2 2.5E-05 21.4 1.5 12 322-333 2-13 (17)
82 PF13306 LRR_5: Leucine rich r 80.8 0.28 6.1E-06 39.7 -1.5 56 271-330 35-90 (129)
83 KOG3763 mRNA export factor TAP 79.3 2.5 5.4E-05 42.4 4.1 65 345-413 216-282 (585)
84 KOG3735 Tropomodulin and leiom 69.8 9.9 0.00022 35.7 5.2 88 337-427 189-280 (353)
85 PF00560 LRR_1: Leucine Rich R 60.7 5.5 0.00012 20.5 1.1 13 322-334 1-13 (22)
86 smart00370 LRR Leucine-rich re 53.7 11 0.00024 20.2 1.7 14 321-334 2-15 (26)
87 smart00369 LRR_TYP Leucine-ric 53.7 11 0.00024 20.2 1.7 14 321-334 2-15 (26)
88 KOG3214 Uncharacterized Zn rib 52.6 9.5 0.00021 28.4 1.6 11 515-525 67-77 (109)
89 KOG4242 Predicted myosin-I-bin 50.1 25 0.00054 34.9 4.4 308 127-466 165-498 (553)
90 PF07723 LRR_2: Leucine Rich R 48.8 14 0.0003 20.1 1.5 8 377-384 2-9 (26)
91 smart00365 LRR_SD22 Leucine-ri 41.7 23 0.00049 19.3 1.6 14 321-334 2-15 (26)
92 PHA02608 67 prohead core prote 40.8 20 0.00044 25.3 1.6 13 520-532 41-53 (80)
93 KOG3735 Tropomodulin and leiom 38.7 97 0.0021 29.5 6.2 82 261-343 188-277 (353)
94 COG1614 CdhC CO dehydrogenase/ 29.2 42 0.00091 31.4 2.3 13 513-525 380-392 (470)
95 PRK12766 50S ribosomal protein 23.9 42 0.00091 30.0 1.3 11 448-458 11-21 (232)
96 PF07735 FBA_2: F-box associat 21.4 2.8E+02 0.0062 19.0 6.1 14 376-389 12-25 (70)
97 COG5129 MAK16 Nuclear protein 20.9 48 0.001 28.9 1.0 14 515-528 227-240 (303)
98 PF13324 GCIP: Grap2 and cycli 20.9 57 0.0012 30.5 1.6 16 511-526 134-149 (275)
99 PF02020 W2: eIF4-gamma/eIF5/e 20.8 69 0.0015 23.4 1.7 19 515-533 65-83 (84)
100 PF02724 CDC45: CDC45-like pro 20.2 2E+02 0.0042 30.7 5.5 10 437-446 52-61 (622)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=2.5e-28 Score=222.29 Aligned_cols=325 Identities=23% Similarity=0.336 Sum_probs=261.3
Q ss_pred hHHHHHHhcC-CCccEEecCCCCCCCCccccccchhhhhhhc-cCCCcceEEcccccccccccccccChHHHHHHHHcCC
Q 009004 142 AMVGTISQGL-VSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCA 219 (547)
Q Consensus 142 ~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (547)
..++.+.+.+ ..|++|.++|| ..+.+..+..+. .||++++|.+ .++..+++..+..+...|+
T Consensus 127 ~VV~~~~~Rcgg~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l--------~gc~~iTd~s~~sla~~C~ 190 (483)
T KOG4341|consen 127 GVVENMISRCGGFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLAL--------YGCKKITDSSLLSLARYCR 190 (483)
T ss_pred cceehHhhhhcccccccccccc--------ccCCcchhhHHhhhCCchhhhhh--------hcceeccHHHHHHHHHhcc
Confidence 4455555433 47888888887 355555555554 7888888887 5577888888888888888
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCC
Q 009004 220 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGI 298 (547)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L 298 (547)
.|++|++..|..+++..+..+..+|++|++|.++.|+.++..++..+.+.+..++.+...||..+....+.... .++-+
T Consensus 191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 88888888888888888888888888888888888888888888888888888888888888777766665443 56667
Q ss_pred CEEeCCCCCCCChHHHHhhh-CCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCC
Q 009004 299 KVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 376 (547)
Q Consensus 299 ~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 376 (547)
.++++..|..+++.++..+. .+..|+.|..+++ .+++..+.++.. .+++|+.|.+..|..+++.++..++.+| +.
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~ 347 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PH 347 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hh
Confidence 77777788778887766555 6888888888886 788888888888 8899999999999889999999988888 89
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHh
Q 009004 377 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 456 (547)
Q Consensus 377 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 456 (547)
|+.+++.+|..+.+..+..++.+|+.|+.|.+++|..+||.++..+..... ....|+.+.+.+|+.+++..+..+
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHH
Confidence 999999998888888888888889999999999998889988887776443 667788899999998888888888
Q ss_pred hCCCCCCCcEEEeeCCC--CHHHHHHHHhhCCCcEeec
Q 009004 457 KKPYFPRLRWLGVTGSV--NRDILDALARSRPFLNVAC 492 (547)
Q Consensus 457 ~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~~ 492 (547)
.. |++|+.+.+.+|. ..+.+.++....|++++..
T Consensus 423 ~~--c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 423 SI--CRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hh--CcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 76 8999999999885 5678888888888888654
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=5.7e-28 Score=220.02 Aligned_cols=317 Identities=24% Similarity=0.391 Sum_probs=288.0
Q ss_pred CCccEEEeec-cCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhc-cCCCcceEEccccccccccccc
Q 009004 127 PGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFR 204 (547)
Q Consensus 127 ~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~ 204 (547)
..|+.|.+++ ..+.+..+..+...||++++|.+.+| ..+++..+..++ .|++|++|++ ..|.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc--------~~iTd~s~~sla~~C~~l~~l~L--------~~c~ 201 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC--------KKITDSSLLSLARYCRKLRHLNL--------HSCS 201 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcc--------eeccHHHHHHHHHhcchhhhhhh--------cccc
Confidence 5789999995 57788899999999999999999999 688998888886 9999999999 4578
Q ss_pred ccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 009004 205 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 205 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 284 (547)
.+++..+..++..|++|++|++++|+.+...++..+.+++..++++...+|.......+..+..+++.+..+++..|+.+
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CHHHHHHhh-cCCCCCEEeCCCCCCCChHHHHhhh-CCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCc
Q 009004 285 TNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLT 361 (547)
Q Consensus 285 ~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~ 361 (547)
++..+..+. .+..|+.|+.++|..+++..+.+++ ++++|+.|.+..| .+++.++..++. +++.|+.+++.+|..++
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLIT 360 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhcccccceeh
Confidence 998876655 6889999999999899999888887 8999999999998 789999999999 99999999999999899
Q ss_pred HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCcc
Q 009004 362 DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIR 438 (547)
Q Consensus 362 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~ 438 (547)
+..+..++..| +.|+.|.++.|..+++.++..+.. +...|..+.+.+||.+++..+..+. .|++|+
T Consensus 361 d~tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~---------~c~~Le 429 (483)
T KOG4341|consen 361 DGTLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS---------ICRNLE 429 (483)
T ss_pred hhhHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh---------hCcccc
Confidence 99999999888 999999999999999998876653 4568999999999999999999888 899999
Q ss_pred EEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCC
Q 009004 439 LLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 472 (547)
Q Consensus 439 ~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 472 (547)
.+++.+|..++..++..+.. .+|++++.....-
T Consensus 430 ri~l~~~q~vtk~~i~~~~~-~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFAT-HLPNIKVHAYFAP 462 (483)
T ss_pred eeeeechhhhhhhhhHHHHh-hCccceehhhccC
Confidence 99999999999999999998 8999998876554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=8e-23 Score=226.38 Aligned_cols=83 Identities=25% Similarity=0.367 Sum_probs=50.3
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeeccccccc-ccchhHH
Q 009004 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRHNFA 81 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~ 81 (547)
.++|++|+|++|. +.......+ .++++|++|+++++ .++. .++..+..+++|++|+++.|... ..+..+.
T Consensus 139 l~~L~~L~Ls~n~-~~~~~p~~~-~~l~~L~~L~L~~n------~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 139 IPNLETLDLSNNM-LSGEIPNDI-GSFSSLKVLDLGGN------VLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred cCCCCEEECcCCc-ccccCChHH-hcCCCCCEEECccC------cccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 5789999999986 554433444 58999999999852 2221 12233456888888888765431 1112222
Q ss_pred HHHHHhhcccceeeccCc
Q 009004 82 RVWALASEKLTSLEIGYI 99 (547)
Q Consensus 82 ~l~~~~~~~L~~L~l~~~ 99 (547)
.+ .+|+.|+++..
T Consensus 210 ~l-----~~L~~L~L~~n 222 (968)
T PLN00113 210 QM-----KSLKWIYLGYN 222 (968)
T ss_pred Cc-----CCccEEECcCC
Confidence 22 66777777643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.7e-22 Score=221.16 Aligned_cols=401 Identities=15% Similarity=0.066 Sum_probs=170.7
Q ss_pred cccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHHH
Q 009004 4 PTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARV 83 (547)
Q Consensus 4 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l 83 (547)
.+++.|+|+++. +.......+ ..+++|+.|++++ +.+...-...+...+++|++|+|+.+... +....
T Consensus 69 ~~v~~L~L~~~~-i~~~~~~~~-~~l~~L~~L~Ls~------n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~p~--- 136 (968)
T PLN00113 69 SRVVSIDLSGKN-ISGKISSAI-FRLPYIQTINLSN------NQLSGPIPDDIFTTSSSLRYLNLSNNNFT-GSIPR--- 136 (968)
T ss_pred CcEEEEEecCCC-ccccCChHH-hCCCCCCEEECCC------CccCCcCChHHhccCCCCCEEECcCCccc-cccCc---
Confidence 356777777764 444332333 4778888888874 22321112233446777888877754331 11111
Q ss_pred HHHhhcccceeeccCcchH-hhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCC
Q 009004 84 WALASEKLTSLEIGYISSV-MVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 162 (547)
Q Consensus 84 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 162 (547)
...++|+.|+++..... ..+.. +..+++|++|+++++.+.......+ ..+++|++|++++|
T Consensus 137 --~~l~~L~~L~Ls~n~~~~~~p~~---------------~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n 198 (968)
T PLN00113 137 --GSIPNLETLDLSNNMLSGEIPND---------------IGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASN 198 (968)
T ss_pred --cccCCCCEEECcCCcccccCChH---------------HhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCC
Confidence 11266777777653221 11111 2335555555555554433222222 24555555555554
Q ss_pred CCCCCccccccchhhhhhhccCCCcceEEccccccccc----------------ccccccChHHHHHHHHcCCCCcEEEE
Q 009004 163 PLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLI----------------TYFRRVNDLGILLMADKCASMESICL 226 (547)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~L~~L~l 226 (547)
.. +......+..+++|++|+++++.-... .++ .+... +......+++|+.|++
T Consensus 199 ~l---------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 199 QL---------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGP-IPSSLGNLKNLQYLFL 267 (968)
T ss_pred CC---------cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc-eeccc-cChhHhCCCCCCEEEC
Confidence 21 111112333444555555432100000 000 00000 0001123444444444
Q ss_pred cCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCC
Q 009004 227 GGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDC 306 (547)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 306 (547)
+++ .+..... ..+..+++|+.|++++|. ++.. +......+++|+.|+++++ .+.......+..+++|+.|++++|
T Consensus 268 ~~n-~l~~~~p-~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 268 YQN-KLSGPIP-PSIFSLQKLISLDLSDNS-LSGE-IPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred cCC-eeeccCc-hhHhhccCcCEEECcCCe-eccC-CChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCC
Confidence 442 2221111 112234445555554432 1111 1111223345555555442 222111222334455555555544
Q ss_pred CCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCC
Q 009004 307 KNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP 386 (547)
Q Consensus 307 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 386 (547)
.+.......+..+++|+.|++++|.++......+.. +++|+.|+++++. +.......+ . .+++|+.|++++|
T Consensus 343 -~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~L~~L~l~~n~-l~~~~p~~~-~--~~~~L~~L~L~~n- 414 (968)
T PLN00113 343 -KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--SGNLFKLILFSNS-LEGEIPKSL-G--ACRSLRRVRLQDN- 414 (968)
T ss_pred -CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--cCCCCEEECcCCE-ecccCCHHH-h--CCCCCCEEECcCC-
Confidence 333222333444555555555555443322222222 4455555555432 221111111 1 1156777777664
Q ss_pred CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcE
Q 009004 387 HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRW 466 (547)
Q Consensus 387 ~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~ 466 (547)
.++...... ...+++|+.|++++| .++......+. .+++|+.|++++|. +..... ... ..++|+.
T Consensus 415 ~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~L~~n~-~~~~~p-~~~--~~~~L~~ 479 (968)
T PLN00113 415 SFSGELPSE-FTKLPLVYFLDISNN-NLQGRINSRKW---------DMPSLQMLSLARNK-FFGGLP-DSF--GSKRLEN 479 (968)
T ss_pred EeeeECChh-HhcCCCCCEEECcCC-cccCccChhhc---------cCCCCcEEECcCce-eeeecC-ccc--ccccceE
Confidence 333211111 124667777777766 34332211111 56778888888776 332111 111 2467888
Q ss_pred EEeeCCC
Q 009004 467 LGVTGSV 473 (547)
Q Consensus 467 L~l~~~~ 473 (547)
|++++|.
T Consensus 480 L~ls~n~ 486 (968)
T PLN00113 480 LDLSRNQ 486 (968)
T ss_pred EECcCCc
Confidence 8888875
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.8e-23 Score=196.04 Aligned_cols=396 Identities=19% Similarity=0.187 Sum_probs=257.7
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccc-cccchhHH
Q 009004 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDIS-LFLRHNFA 81 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~~ 81 (547)
++.-++|+++++. +...++..+ .++++|+.+++.+ +..+ .++.+..-..+|+.|+|..|.. .+....++
T Consensus 77 p~~t~~LdlsnNk-l~~id~~~f-~nl~nLq~v~l~~------N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~ 146 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK-LSHIDFEFF-YNLPNLQEVNLNK------NELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELS 146 (873)
T ss_pred ccceeeeeccccc-cccCcHHHH-hcCCcceeeeecc------chhh--hcccccccccceeEEeeeccccccccHHHHH
Confidence 4555779999987 888887766 5999999999974 3333 4556666677899999986554 33344444
Q ss_pred HHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCC
Q 009004 82 RVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRD 161 (547)
Q Consensus 82 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 161 (547)
.+ +.|++|+++.......+.- .++.-.++++|+|++|.|++-....+. .+.+|..|.|+.
T Consensus 147 ~l-----~alrslDLSrN~is~i~~~--------------sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsr 206 (873)
T KOG4194|consen 147 AL-----PALRSLDLSRNLISEIPKP--------------SFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSR 206 (873)
T ss_pred hH-----hhhhhhhhhhchhhcccCC--------------CCCCCCCceEEeecccccccccccccc-ccchheeeeccc
Confidence 44 6677777765322211111 144567899999999999886665554 667999999998
Q ss_pred CCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHH
Q 009004 162 APLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTIL 241 (547)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 241 (547)
| .++......++++++|+.|++.++ ...-+....+ +++++|+.|.+..+ ++... -..++
T Consensus 207 N---------rittLp~r~Fk~L~~L~~LdLnrN------~irive~ltF----qgL~Sl~nlklqrN-~I~kL-~DG~F 265 (873)
T KOG4194|consen 207 N---------RITTLPQRSFKRLPKLESLDLNRN------RIRIVEGLTF----QGLPSLQNLKLQRN-DISKL-DDGAF 265 (873)
T ss_pred C---------cccccCHHHhhhcchhhhhhcccc------ceeeehhhhh----cCchhhhhhhhhhc-Ccccc-cCcce
Confidence 7 455545566778999999999542 1222212222 56888999988873 44322 11234
Q ss_pred HcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCC
Q 009004 242 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 321 (547)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 321 (547)
-.|.++++|+++.+ .++...-..++ .+..|+.|+++. +.+.......-..+++|+.|+++++ .++......|..+.
T Consensus 266 y~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 266 YGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLS 341 (873)
T ss_pred eeecccceeecccc-hhhhhhccccc-ccchhhhhccch-hhhheeecchhhhcccceeEecccc-ccccCChhHHHHHH
Confidence 56889999999874 44433322222 356888899988 5554443433346889999999988 77777777888889
Q ss_pred CccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc---HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 009004 322 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 398 (547)
Q Consensus 322 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 398 (547)
.|+.|.|++|.++...-.++.. +.+|+.|+|+++. ++ .++-..+ . .++.|+.|.+.| +++....-.++.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~--lssL~~LdLr~N~-ls~~IEDaa~~f-~--gl~~LrkL~l~g-Nqlk~I~krAfs- 413 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVG--LSSLHKLDLRSNE-LSWCIEDAAVAF-N--GLPSLRKLRLTG-NQLKSIPKRAFS- 413 (873)
T ss_pred HhhhhcccccchHHHHhhHHHH--hhhhhhhcCcCCe-EEEEEecchhhh-c--cchhhhheeecC-ceeeecchhhhc-
Confidence 9999999999887655555544 7889999988743 33 1222222 1 238899999998 677655555444
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCC-CCCCCcEEEeeCC
Q 009004 399 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKP-YFPRLRWLGVTGS 472 (547)
Q Consensus 399 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~-~~~~L~~L~l~~~ 472 (547)
++++|+.|++.+|+ +...-..++. .+ +|++|.+....-+.+..+.++... +-..++.-....|
T Consensus 414 gl~~LE~LdL~~Na-iaSIq~nAFe---------~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~C 477 (873)
T KOG4194|consen 414 GLEALEHLDLGDNA-IASIQPNAFE---------PM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKC 477 (873)
T ss_pred cCcccceecCCCCc-ceeecccccc---------cc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeec
Confidence 68899999998885 3333333333 22 577877765555566556666541 1124444445555
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-22 Score=191.00 Aligned_cols=343 Identities=18% Similarity=0.170 Sum_probs=229.8
Q ss_pred ccceeecccccc-cccchhHHHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCC
Q 009004 62 QLEALILMFDIS-LFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYIT 140 (547)
Q Consensus 62 ~L~~L~L~~~~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 140 (547)
.-+.|+++.|.. .++...+..+ ++|+.+.+.+......+.+ .....+|++|+|..|.|.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl-----~nLq~v~l~~N~Lt~IP~f---------------~~~sghl~~L~L~~N~I~ 138 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNL-----PNLQEVNLNKNELTRIPRF---------------GHESGHLEKLDLRHNLIS 138 (873)
T ss_pred ceeeeeccccccccCcHHHHhcC-----Ccceeeeeccchhhhcccc---------------cccccceeEEeeeccccc
Confidence 345577765433 2222233333 6777777766544433333 444678999999988887
Q ss_pred hhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCC
Q 009004 141 DAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCAS 220 (547)
Q Consensus 141 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (547)
...-+.+. .+|.|++|||+.| .++......+..-.++++|++++ +.++......+ ..+.+
T Consensus 139 sv~se~L~-~l~alrslDLSrN---------~is~i~~~sfp~~~ni~~L~La~---------N~It~l~~~~F-~~lns 198 (873)
T KOG4194|consen 139 SVTSEELS-ALPALRSLDLSRN---------LISEIPKPSFPAKVNIKKLNLAS---------NRITTLETGHF-DSLNS 198 (873)
T ss_pred cccHHHHH-hHhhhhhhhhhhc---------hhhcccCCCCCCCCCceEEeecc---------ccccccccccc-cccch
Confidence 76655554 7889999999987 34443344455567899999964 33333322222 34568
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCE
Q 009004 221 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 300 (547)
Q Consensus 221 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~ 300 (547)
|..|.|+. +.++.... ..++.+++|+.|++..+ ++...- ..-++.+++|+.|.+.. +.+....-..|..+.++++
T Consensus 199 L~tlkLsr-NrittLp~-r~Fk~L~~L~~LdLnrN-~irive-~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 199 LLTLKLSR-NRITTLPQ-RSFKRLPKLESLDLNRN-RIRIVE-GLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred heeeeccc-CcccccCH-HHhhhcchhhhhhcccc-ceeeeh-hhhhcCchhhhhhhhhh-cCcccccCcceeeecccce
Confidence 99999998 47766533 34677999999999874 333221 12356678899998887 4554443445667889999
Q ss_pred EeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCC--CCcHHHHHHHhccCCCCCcc
Q 009004 301 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK--RLTDKCISALFDGTSKLQLQ 378 (547)
Q Consensus 301 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~~~~L~ 378 (547)
|++..+ .+....-.++-++..|+.|++++|.|.......+.. +++|+.|+|+++. .+.+..+..+ ..|+
T Consensus 274 l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N~i~~l~~~sf~~L------~~Le 344 (873)
T KOG4194|consen 274 LNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSNRITRLDEGSFRVL------SQLE 344 (873)
T ss_pred eecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhh--cccceeEeccccccccCChhHHHHH------HHhh
Confidence 999887 676666667778999999999998776666666655 8899999998853 2335666666 7889
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC---CCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHH
Q 009004 379 ELDLSNLPHLSDNGILTLATCRVPISELRVRQCP---LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 455 (547)
Q Consensus 379 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~---~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 455 (547)
+|.++. +.++...-..+. .+.+|++|++++|. .+.|.+ ..+. .+++|++|.+.+|. +....-++
T Consensus 345 ~LnLs~-Nsi~~l~e~af~-~lssL~~LdLr~N~ls~~IEDaa-~~f~---------gl~~LrkL~l~gNq-lk~I~krA 411 (873)
T KOG4194|consen 345 ELNLSH-NSIDHLAEGAFV-GLSSLHKLDLRSNELSWCIEDAA-VAFN---------GLPSLRKLRLTGNQ-LKSIPKRA 411 (873)
T ss_pred hhcccc-cchHHHHhhHHH-HhhhhhhhcCcCCeEEEEEecch-hhhc---------cchhhhheeecCce-eeecchhh
Confidence 999988 677533222222 57788888888874 133322 2222 77889999998886 77777777
Q ss_pred hhCCCCCCCcEEEeeCCC
Q 009004 456 LKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 456 l~~~~~~~L~~L~l~~~~ 473 (547)
|.+ +++|++|++.+|.
T Consensus 412 fsg--l~~LE~LdL~~Na 427 (873)
T KOG4194|consen 412 FSG--LEALEHLDLGDNA 427 (873)
T ss_pred hcc--CcccceecCCCCc
Confidence 776 8889999888885
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.3e-16 Score=154.22 Aligned_cols=167 Identities=26% Similarity=0.243 Sum_probs=84.9
Q ss_pred CCCCEEeCCCCCCCChHHH----HhhhCCCCccEEEecCccCChHhHHHHHH--hcCCCccEEEeCCCCCCcHHHHHHHh
Q 009004 296 TGIKVLDLRDCKNLGDEAL----RAISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALF 369 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~----~~l~~~~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~~~~~~~~~l~ 369 (547)
++|+.|++++| .++..+. ..+..+++|++|++++|.+++.++..+.. ..+++|++|++++|. +++.+...+.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA 214 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence 55666666655 3442221 22334556666666666665544433322 023466666666653 5444443332
Q ss_pred cc-CCCCCccEEecCCCCCCCHHHHHHHHhcC----CCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCC
Q 009004 370 DG-TSKLQLQELDLSNLPHLSDNGILTLATCR----VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 444 (547)
Q Consensus 370 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 444 (547)
.. ...++|++|++++| .+++.++..+...+ +.|+.|++.+| .+++.+...+..... .+++|+.+++++
T Consensus 215 ~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~-----~~~~L~~l~l~~ 287 (319)
T cd00116 215 ETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLA-----EKESLLELDLRG 287 (319)
T ss_pred HHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHh-----cCCCccEEECCC
Confidence 21 11256666666663 55555555444332 56677777666 566555544444332 445667777766
Q ss_pred CCCCCHHHHHHhhC--CCC-CCCcEEEeeCC
Q 009004 445 CGGITQLAFRWLKK--PYF-PRLRWLGVTGS 472 (547)
Q Consensus 445 ~~~i~~~~~~~l~~--~~~-~~L~~L~l~~~ 472 (547)
|. +++.+...+.. ... +.|+.+++.++
T Consensus 288 N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 288 NK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 65 66554333332 012 35666655544
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=2.1e-14 Score=138.75 Aligned_cols=252 Identities=23% Similarity=0.233 Sum_probs=172.8
Q ss_pred HHHHHHHcCCCCcEEEEcCCCCCCHHHHHH---HHHcCCCCcEEEecCCCCCC--HHHHH---HHHhcCCCccEEEccCC
Q 009004 210 GILLMADKCASMESICLGGFCRVTDTGFKT---ILHSCSNLYKLRVSHGTQLT--DLVFH---DISATSLSLTHVCLRWC 281 (547)
Q Consensus 210 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~---~~~~~~~~L~~L~l~~~ 281 (547)
....+.....+|+.|.++++ .+++.+... .+...+.|++|+++++. +. ...+. .....+++|+.|+++++
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred chHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 33444455677999999996 676554433 44556779999998753 33 22222 23345779999999996
Q ss_pred CCCCHHHHHHhhcC---CCCCEEeCCCCCCCChHHHHh----hhCC-CCccEEEecCccCChHhHHHHHH--hcCCCccE
Q 009004 282 NLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEALRA----ISSL-PQLKILLLDGSDISDVGVSYLRL--TVITSLVK 351 (547)
Q Consensus 282 ~~l~~~~~~~l~~~---~~L~~L~l~~~~~l~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~ 351 (547)
.. .......+..+ ++|+.|++++| .+.+.+... +..+ ++|+.|++++|.++..+...+.. ..+++|+.
T Consensus 92 ~~-~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 92 AL-GPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169 (319)
T ss_pred CC-ChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE
Confidence 44 32222233222 56999999998 576554443 3466 99999999999888554433322 14678999
Q ss_pred EEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHH---HhcCCCCcEEeccCCCCCCHHHHHHHHhccc
Q 009004 352 LSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALASMLV 427 (547)
Q Consensus 352 L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 427 (547)
|++++|. +++.++..++.. ...++|++|++++| .+++.+...+ ...+++|+.|++++| .+++.++..++....
T Consensus 170 L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~ 246 (319)
T cd00116 170 LNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALL 246 (319)
T ss_pred EECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHh
Confidence 9999964 776666555432 12269999999995 7776655443 345789999999999 699888887776322
Q ss_pred cCccccCCCccEEecCCCCCCCHHHHHHhhC--CCCCCCcEEEeeCCC
Q 009004 428 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 473 (547)
Q Consensus 428 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 473 (547)
. ..+.|++|++++|. +++.+...+.. +.+++|+.+++++|.
T Consensus 247 ~----~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 247 S----PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred c----cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 1 24799999999997 88655554433 246899999999996
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.8e-16 Score=136.93 Aligned_cols=255 Identities=19% Similarity=0.255 Sum_probs=190.4
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHH-HHhcCCCccEEEccCCCCCCHHHHH-HhhcCC
Q 009004 219 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD-ISATSLSLTHVCLRWCNLLTNHAIK-SLASNT 296 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~~~ 296 (547)
...+.+++.+ ..+....+..+.+ +....+++.. ..+.+..+.. ..-.-..|++|+++. ..++...+. -+.+|.
T Consensus 136 ~lW~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~ 210 (419)
T KOG2120|consen 136 SLWQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCS 210 (419)
T ss_pred cceeeeccCC-CccChhHHHHHHh--CCeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHH
Confidence 3466677777 4666555555444 4555555543 2222222221 111224688888888 455554443 355888
Q ss_pred CCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCC
Q 009004 297 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL 375 (547)
Q Consensus 297 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 375 (547)
+|+.|.+.+. .+.+.....++...+|+.|+++.+ .++..++..+.. .|+.|..|+++.|...++. +...... ..+
T Consensus 211 kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~-Vtv~V~h-ise 286 (419)
T KOG2120|consen 211 KLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEK-VTVAVAH-ISE 286 (419)
T ss_pred hhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchh-hhHHHhh-hch
Confidence 9999999887 788888888889999999999996 888888888777 8999999999999866655 3322221 228
Q ss_pred CccEEecCCCC-CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHH
Q 009004 376 QLQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 454 (547)
Q Consensus 376 ~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 454 (547)
+|+.|+++||. ++....+..+.+.||+|..|+++.|..+++..+..+. .++.|++|.++.|-.|.+..+-
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---------kf~~L~~lSlsRCY~i~p~~~~ 357 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------KFNYLQHLSLSRCYDIIPETLL 357 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---------hcchheeeehhhhcCCChHHee
Confidence 99999999983 4566788888889999999999999889987777666 7899999999999989888877
Q ss_pred HhhCCCCCCCcEEEeeCCCCHHHHHHHHhhCCCcEeecc
Q 009004 455 WLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACR 493 (547)
Q Consensus 455 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 493 (547)
.+.. .|+|.+|++.||......+.+.+..|++++.+.
T Consensus 358 ~l~s--~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q 394 (419)
T KOG2120|consen 358 ELNS--KPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQ 394 (419)
T ss_pred eecc--CcceEEEEeccccCchHHHHHHHhCccccccce
Confidence 7776 999999999999887788888889998887654
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.62 E-value=5.7e-15 Score=132.80 Aligned_cols=208 Identities=24% Similarity=0.329 Sum_probs=131.6
Q ss_pred cCCCccEEEccCCCCCCHHHHHHh----hcCCCCCEEeCCCCCCCChHHHHhh-------------hCCCCccEEEecCc
Q 009004 269 TSLSLTHVCLRWCNLLTNHAIKSL----ASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGS 331 (547)
Q Consensus 269 ~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~l-------------~~~~~L~~L~l~~~ 331 (547)
.+|.|+.|+|+. +.++..++..+ .++.+|+.|.|.+| ++...+-..+ +.-++|+.+....|
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 445666666666 44444444332 35666777776666 5554433322 24578888888888
Q ss_pred cCChHhHHHHHH--hcCCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCcE
Q 009004 332 DISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISE 405 (547)
Q Consensus 332 ~l~~~~l~~l~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~ 405 (547)
.+.+.+...++. ...+.|+.+.+.++ .+...++..++.+ ..+++|+.|++.. +.++..+-.++++ .+++|+.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchhee
Confidence 776655544332 24677888888774 4665555444332 1228888888888 5666555544443 4567888
Q ss_pred EeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhC--CCCCCCcEEEeeCCC---CHHHHHH
Q 009004 406 LRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV---NRDILDA 480 (547)
Q Consensus 406 L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~---~~~~~~~ 480 (547)
|+++.| .+.+.|..++..++.. ..|+|+.|.+.+|. |+..+...+.. ..-|.|+.|.+.+|. ..+.+..
T Consensus 246 l~l~dc-ll~~~Ga~a~~~al~~----~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~e 319 (382)
T KOG1909|consen 246 LNLGDC-LLENEGAIAFVDALKE----SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDE 319 (382)
T ss_pred eccccc-ccccccHHHHHHHHhc----cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHH
Confidence 888888 7888777777766654 67888888888886 77765544443 236788888888885 3455555
Q ss_pred HHhhCC
Q 009004 481 LARSRP 486 (547)
Q Consensus 481 ~~~~~~ 486 (547)
+...++
T Consensus 320 i~~~~~ 325 (382)
T KOG1909|consen 320 IASKFD 325 (382)
T ss_pred HHHhcc
Confidence 555544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1.2e-14 Score=161.67 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=57.3
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCC
Q 009004 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 374 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 374 (547)
++|+.|++++|..+.. ....++.+++|+.|++++| .+.... ... .+++|+.|++++|..+.. +....
T Consensus 778 ~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~--~L~sL~~L~Ls~c~~L~~-----~p~~~-- 845 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLP--TGI--NLESLESLDLSGCSRLRT-----FPDIS-- 845 (1153)
T ss_pred ccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeC--CCC--CccccCEEECCCCCcccc-----ccccc--
Confidence 4555555555432222 1223445555566655554 222110 000 245555555555544321 00001
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCC
Q 009004 375 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 449 (547)
Q Consensus 375 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 449 (547)
++|+.|++++ +.++... .-...+++|+.|++.+|+.++..... .. .+++|+.+++++|..++
T Consensus 846 ~nL~~L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~~--~~--------~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 846 TNISDLNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSLN--IS--------KLKHLETVDFSDCGALT 907 (1153)
T ss_pred cccCEeECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCccCcc--cc--------cccCCCeeecCCCcccc
Confidence 4556666655 3443111 11124566666666666554432211 11 45566666666665554
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=7.9e-17 Score=154.80 Aligned_cols=364 Identities=17% Similarity=0.161 Sum_probs=217.9
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHH
Q 009004 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFAR 82 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 82 (547)
.|..+-++++++. ++...+++-.+.++.++-|.|.. .....+++-+..+.+|++|.++.+........+..
T Consensus 6 LpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnr--------t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~ 76 (1255)
T KOG0444|consen 6 LPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNR--------TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSD 76 (1255)
T ss_pred cceeecccccCCc-CCCCcCchhHHHhhheeEEEech--------hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhcc
Confidence 3556778888887 77777776667899999999863 23335556778899999999876543222222333
Q ss_pred HHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCC
Q 009004 83 VWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 162 (547)
Q Consensus 83 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 162 (547)
+ +.|+++.++.... ++.+++.- +..+..|+.|+|+.|.+.+ +..-...-+++-.|+|++|
T Consensus 77 L-----p~LRsv~~R~N~L-----------KnsGiP~d--iF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 77 L-----PRLRSVIVRDNNL-----------KNSGIPTD--IFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYN 136 (1255)
T ss_pred c-----hhhHHHhhhcccc-----------ccCCCCch--hcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccC
Confidence 3 5555555543211 01111110 3447788889998877654 2222235678889999987
Q ss_pred CCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHH
Q 009004 163 PLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 242 (547)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 242 (547)
.+ ....-+.+.++..|-.|+++. +....++.. .+.+..|++|.|+++ .+.-..+.++ -
T Consensus 137 ~I---------etIPn~lfinLtDLLfLDLS~------NrLe~LPPQ-----~RRL~~LqtL~Ls~N-PL~hfQLrQL-P 194 (1255)
T KOG0444|consen 137 NI---------ETIPNSLFINLTDLLFLDLSN------NRLEMLPPQ-----IRRLSMLQTLKLSNN-PLNHFQLRQL-P 194 (1255)
T ss_pred cc---------ccCCchHHHhhHhHhhhcccc------chhhhcCHH-----HHHHhhhhhhhcCCC-hhhHHHHhcC-c
Confidence 32 211112233556677777753 112223222 134677888999884 3333323332 2
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCC
Q 009004 243 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 322 (547)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 322 (547)
.+.+|+.|.+++..+ +-..+......+.+|..++++. +.++.. ...+.++++|++|+++++ .++.... ......+
T Consensus 195 smtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecly~l~~LrrLNLS~N-~iteL~~-~~~~W~~ 269 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECLYKLRNLRRLNLSGN-KITELNM-TEGEWEN 269 (1255)
T ss_pred cchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCCcc-hHHHhhhhhhheeccCcC-ceeeeec-cHHHHhh
Confidence 245677777776332 2222222333456888888887 454432 234557888888888887 5654332 1234578
Q ss_pred ccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH----HHHHHHhccCCCCCccEEecCCCCCCC--HHHHHHH
Q 009004 323 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD----KCISALFDGTSKLQLQELDLSNLPHLS--DNGILTL 396 (547)
Q Consensus 323 L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~----~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l 396 (547)
|++|+++.|.++.. ..+++. +++|+.|.+.++ .++- .++..+ .+|+.++.++ +.+. +.++.
T Consensus 270 lEtLNlSrNQLt~L-P~avcK--L~kL~kLy~n~N-kL~FeGiPSGIGKL------~~Levf~aan-N~LElVPEglc-- 336 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVL-PDAVCK--LTKLTKLYANNN-KLTFEGIPSGIGKL------IQLEVFHAAN-NKLELVPEGLC-- 336 (1255)
T ss_pred hhhhccccchhccc-hHHHhh--hHHHHHHHhccC-cccccCCccchhhh------hhhHHHHhhc-cccccCchhhh--
Confidence 88888888866532 234455 777888877664 3553 344444 5788888887 4443 44544
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCC
Q 009004 397 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 448 (547)
Q Consensus 397 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 448 (547)
.|+.|+.|.+..|..+|-..-.+ -++.|+.||+..|+++
T Consensus 337 --RC~kL~kL~L~~NrLiTLPeaIH-----------lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 337 --RCVKLQKLKLDHNRLITLPEAIH-----------LLPDLKVLDLRENPNL 375 (1255)
T ss_pred --hhHHHHHhcccccceeechhhhh-----------hcCCcceeeccCCcCc
Confidence 68888999888886665443333 4567888898888875
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.8e-15 Score=129.62 Aligned_cols=148 Identities=24% Similarity=0.292 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC-CCHHHHHHh-hcC
Q 009004 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL-LTNHAIKSL-ASN 295 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~l-~~~ 295 (547)
..+|+.|+|++|++++..+...++..|..|..|+++.|...++..-..+....++|+.|+++||.. +....+..+ ..|
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 345666666666666666666666666666666666655444442223333445566666665432 111112222 256
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHh
Q 009004 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF 369 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 369 (547)
|+|..||++.|..+++..+..|.+++.|++|.++.| .|....+..+.. .|.|.+|++.+| ++|..++.+.
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s--~psl~yLdv~g~--vsdt~mel~~ 383 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNS--KPSLVYLDVFGC--VSDTTMELLK 383 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeecc--CcceEEEEeccc--cCchHHHHHH
Confidence 666666666665555555555556666666666665 444444444443 566666666665 4444444443
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=5.8e-14 Score=126.37 Aligned_cols=161 Identities=22% Similarity=0.234 Sum_probs=98.8
Q ss_pred cCCCCCEEeCCCCCCCChHHHH----hhhCCCCccEEEecCccCChHhHHHHHH--hcCCCccEEEeCCCCCCcHHHHHH
Q 009004 294 SNTGIKVLDLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISA 367 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~----~l~~~~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~~~~~~~~~ 367 (547)
.-+.|+++...+| .+.+.+.. .+...|.|+.+.++.|.|...++..+.. ..||+|+.|+|..+. ++..+-..
T Consensus 155 ~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVA 232 (382)
T ss_pred CCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHH
Confidence 3456666666555 33333222 2335566677777666665555532221 247777777777743 55544444
Q ss_pred Hhcc-CCCCCccEEecCCCCCCCHHHHH----HHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEec
Q 009004 368 LFDG-TSKLQLQELDLSNLPHLSDNGIL----TLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 442 (547)
Q Consensus 368 l~~~-~~~~~L~~L~l~~~~~l~~~~~~----~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 442 (547)
++.. +..++|++|++++| .+.+.+.. ++....|+|+.|.+.+| .++..+...++...- ..|.|+.|+|
T Consensus 233 LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~-----ek~dL~kLnL 305 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMA-----EKPDLEKLNL 305 (382)
T ss_pred HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh-----cchhhHHhcC
Confidence 4433 33478888999987 45544443 34445788999999998 688776655554333 5688999999
Q ss_pred CCCCCC--CHHHHHHhhCCCCCCCc
Q 009004 443 YNCGGI--TQLAFRWLKKPYFPRLR 465 (547)
Q Consensus 443 ~~~~~i--~~~~~~~l~~~~~~~L~ 465 (547)
++|+ + .+.++..+.. .++...
T Consensus 306 ngN~-l~e~de~i~ei~~-~~~~~~ 328 (382)
T KOG1909|consen 306 NGNR-LGEKDEGIDEIAS-KFDTAH 328 (382)
T ss_pred Cccc-ccccchhHHHHHH-hccccc
Confidence 9998 7 5666666665 454433
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=3.3e-14 Score=158.21 Aligned_cols=311 Identities=16% Similarity=0.161 Sum_probs=173.7
Q ss_pred hcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCC
Q 009004 88 SEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEP 167 (547)
Q Consensus 88 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 167 (547)
|.+|+.|.+...+...++.. + ...+|++|++..+.+.. +..-...+++|+.|+|+++..+.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~---------------f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~- 648 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSN---------------F-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLK- 648 (1153)
T ss_pred CcccEEEEecCCCCCCCCCc---------------C-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcC-
Confidence 46677777776554433332 1 24677888877665543 11112357788888888763221
Q ss_pred ccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCC
Q 009004 168 RITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL 247 (547)
Q Consensus 168 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 247 (547)
.++.++.+++|++|++.++ ..+.. +......+++|+.|++++|..+...... ..+++|
T Consensus 649 ---------~ip~ls~l~~Le~L~L~~c--------~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL 706 (1153)
T PLN03210 649 ---------EIPDLSMATNLETLKLSDC--------SSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTG---INLKSL 706 (1153)
T ss_pred ---------cCCccccCCcccEEEecCC--------CCccc--cchhhhccCCCCEEeCCCCCCcCccCCc---CCCCCC
Confidence 1223556778888888543 22211 1111245678888888887655443111 146788
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCC------ChHHHHhhhCCC
Q 009004 248 YKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNL------GDEALRAISSLP 321 (547)
Q Consensus 248 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l------~~~~~~~l~~~~ 321 (547)
+.|++++|..+... .....+|+.|+++++ .+...+ ....+++|+.|.+.++... ...........+
T Consensus 707 ~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~n-~i~~lP--~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 707 YRLNLSGCSRLKSF-----PDISTNISWLDLDET-AIEEFP--SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CEEeCCCCCCcccc-----ccccCCcCeeecCCC-cccccc--ccccccccccccccccchhhccccccccchhhhhccc
Confidence 88888887654332 122457888888774 333221 1124677777777654210 000001112356
Q ss_pred CccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 009004 322 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 401 (547)
Q Consensus 322 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 401 (547)
+|+.|++++|.........+.. +++|+.|++++|..+.. +.....+++|+.|++++|..+... ....+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~--L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~-----p~~~~ 846 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQN--LHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTF-----PDIST 846 (1153)
T ss_pred cchheeCCCCCCccccChhhhC--CCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccccc-----ccccc
Confidence 7888888877432222222333 78888888888765542 111122377888888888665421 11246
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 009004 402 PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 402 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+|+.|+++++ .++.... .+. .+++|+.|++++|++++..... +. .+++|+.+.+.+|.
T Consensus 847 nL~~L~Ls~n-~i~~iP~-si~---------~l~~L~~L~L~~C~~L~~l~~~-~~--~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRT-GIEEVPW-WIE---------KFSNLSFLDMNGCNNLQRVSLN-IS--KLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCC-CCccChH-HHh---------cCCCCCEEECCCCCCcCccCcc-cc--cccCCCeeecCCCc
Confidence 7888888877 4543221 122 6778888888888776653221 11 36777777777775
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.49 E-value=2.1e-13 Score=140.01 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=93.2
Q ss_pred cCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cC
Q 009004 217 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SN 295 (547)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~ 295 (547)
.|++|+.|+++.|..+++.++..+...|++|+.|.+.+|..+++.++..+...+++|++|++++|..+++.++..+. +|
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34444444444443344444444444444444444444444444444444444444444444444444333332221 34
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc-cCC-hHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCC
Q 009004 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DIS-DVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 373 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~-~l~-~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (547)
++|+.|.+..+.. ++.++.+.+.++ .+. +........ .+++++.+.+..|. .++.+..
T Consensus 321 ~~l~~l~~~~~~~-----------c~~l~~~~l~~~~~~~~d~~~~~~~~-~~~~l~~~~l~~~~-~~~~~~~------- 380 (482)
T KOG1947|consen 321 PNLRELKLLSLNG-----------CPSLTDLSLSGLLTLTSDDLAELILR-SCPKLTDLSLSYCG-ISDLGLE------- 380 (482)
T ss_pred cchhhhhhhhcCC-----------CccHHHHHHHHhhccCchhHhHHHHh-cCCCcchhhhhhhh-ccCcchH-------
Confidence 4444433322211 222222222221 111 122222222 45555555555544 3333322
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHH
Q 009004 374 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 453 (547)
Q Consensus 374 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 453 (547)
+.+.+|+.++ ..+......+..++.|+++.|..+++..+..... .+.+++.+++.+|+.++....
T Consensus 381 ------~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~--------~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 381 ------LSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD--------SCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred ------HHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhh--------hhhccccCCccCcccccchhh
Confidence 2333444443 3333333334446666666666666666666553 356666667777766666555
Q ss_pred HHhhC
Q 009004 454 RWLKK 458 (547)
Q Consensus 454 ~~l~~ 458 (547)
..+..
T Consensus 446 ~~~~~ 450 (482)
T KOG1947|consen 446 EGFAS 450 (482)
T ss_pred hhhhc
Confidence 44443
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.46 E-value=1.7e-15 Score=145.75 Aligned_cols=225 Identities=23% Similarity=0.220 Sum_probs=123.0
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 009004 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
+..|-.|+|+.|++.- +.--.+.+.+|++|+|++|| +.-..+..+..+..|+.|.+++..++..+-...
T Consensus 149 LtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls~NP---------L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLSNNP---------LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred hHhHhhhccccchhhh--cCHHHHHHhhhhhhhcCCCh---------hhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 4455566666665422 22222356677777777764 222334444455566666665443332221111
Q ss_pred cChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 009004 206 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 285 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 285 (547)
+ ..+.+|..++++. +.++.. . ..+-.+++|+.|+++++ .++..... ...+.+|++|+++. ++++
T Consensus 218 l---------d~l~NL~dvDlS~-N~Lp~v-P-ecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEtLNlSr-NQLt 281 (1255)
T KOG0444|consen 218 L---------DDLHNLRDVDLSE-NNLPIV-P-ECLYKLRNLRRLNLSGN-KITELNMT--EGEWENLETLNLSR-NQLT 281 (1255)
T ss_pred h---------hhhhhhhhccccc-cCCCcc-h-HHHhhhhhhheeccCcC-ceeeeecc--HHHHhhhhhhcccc-chhc
Confidence 1 2345677777776 344332 1 22334677777777773 44443222 12234677777777 4554
Q ss_pred HHHHHHhhcCCCCCEEeCCCCCCCChHHH-HhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc-HH
Q 009004 286 NHAIKSLASNTGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DK 363 (547)
Q Consensus 286 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~-~~ 363 (547)
..+ .++++++.|+.|.+.++ .++..++ ..++.+.+|+.+...+|.+.- ....++. |++|+.|.+..+..+| ++
T Consensus 282 ~LP-~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcR--C~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 282 VLP-DAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCR--CVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred cch-HHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcccccc-Cchhhhh--hHHHHHhcccccceeechh
Confidence 332 34566777777777666 5555444 345566777777776664321 1122333 7777777777766555 45
Q ss_pred HHHHHhccCCCCCccEEecCCCCCC
Q 009004 364 CISALFDGTSKLQLQELDLSNLPHL 388 (547)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~~~~l 388 (547)
++.-+ +.|+.|++...+++
T Consensus 357 aIHlL------~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 357 AIHLL------PDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhc------CCcceeeccCCcCc
Confidence 55555 67777777775554
No 18
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.46 E-value=3.7e-13 Score=138.19 Aligned_cols=255 Identities=28% Similarity=0.382 Sum_probs=191.2
Q ss_pred ccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecC-CCCCCHHH--HHHHHhcCCCccEEEccCC
Q 009004 205 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSH-GTQLTDLV--FHDISATSLSLTHVCLRWC 281 (547)
Q Consensus 205 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 281 (547)
.........+...++.|+.|.+.+|..+.+.++..+...+++|+.|++++ +...+..+ ...+...+++|++|+++.|
T Consensus 174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 34444455566668899999999988888887788888899999999987 33333322 3346667789999999998
Q ss_pred CCCCHHHHHHhhc-CCCCCEEeCCCCCCCChHHHHhhh-CCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCC-
Q 009004 282 NLLTNHAIKSLAS-NTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGC- 357 (547)
Q Consensus 282 ~~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~- 357 (547)
..+++.++..++. |++|+.|.+.+|..+++.++..++ .+++|++|++++| .+++.++..+.. .|++|+.|.+..+
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~-~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK-NCPNLRELKLLSLN 332 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH-hCcchhhhhhhhcC
Confidence 7788888887774 889999998888668888888776 6888999999988 667888887766 6888777765544
Q ss_pred --CCCcHHHHHHHhccCCCC-CccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccC
Q 009004 358 --KRLTDKCISALFDGTSKL-QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG 434 (547)
Q Consensus 358 --~~~~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 434 (547)
..+++.++......+ . .+..+.+.+|+.+++..+.... .......+.+.+|+.++ .++..... .+
T Consensus 333 ~c~~l~~~~l~~~~~~~--~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~--------~~ 400 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLT--SDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC--------RS 400 (482)
T ss_pred CCccHHHHHHHHhhccC--chhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc--------cC
Confidence 446677766665433 2 6777888888888877776544 22222267788998887 77776665 55
Q ss_pred CCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 009004 435 SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 435 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
..++.|+++.|..++...+..... .+..+..+.+.+|.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~-~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLAD-SCSNLKDLDLSGCR 438 (482)
T ss_pred CccceEecccCccccccchHHHhh-hhhccccCCccCcc
Confidence 559999999999999888877765 37789999999986
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=2e-14 Score=144.65 Aligned_cols=126 Identities=22% Similarity=0.270 Sum_probs=61.1
Q ss_pred CCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH--HHHHHHhccCCCC
Q 009004 298 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--KCISALFDGTSKL 375 (547)
Q Consensus 298 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~~ 375 (547)
|+.|.+.++ .+++..+..+.+.++|+.|+|++|.+....-..+.. ++.|++|+++++. ++. ..+..+ +
T Consensus 361 Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--le~LeeL~LSGNk-L~~Lp~tva~~------~ 430 (1081)
T KOG0618|consen 361 LQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--LEELEELNLSGNK-LTTLPDTVANL------G 430 (1081)
T ss_pred HHHHHHhcC-cccccchhhhccccceeeeeecccccccCCHHHHhc--hHHhHHHhcccch-hhhhhHHHHhh------h
Confidence 344444444 455555555555555555555555444333333333 4455555555532 321 222222 4
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCC
Q 009004 376 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 447 (547)
Q Consensus 376 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 447 (547)
.|++|...+ +.+.... .++ .++.|+.++++.| +++...+.+.. ..++|++||+++|.+
T Consensus 431 ~L~tL~ahs-N~l~~fP--e~~-~l~qL~~lDlS~N-~L~~~~l~~~~---------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 431 RLHTLRAHS-NQLLSFP--ELA-QLPQLKVLDLSCN-NLSEVTLPEAL---------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHhhcC-Cceeech--hhh-hcCcceEEecccc-hhhhhhhhhhC---------CCcccceeeccCCcc
Confidence 555555554 3332111 122 3566666666655 56555555443 235666666666653
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=7.7e-14 Score=140.55 Aligned_cols=198 Identities=22% Similarity=0.249 Sum_probs=109.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh----------------------cCCCCCEEe
Q 009004 245 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA----------------------SNTGIKVLD 302 (547)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----------------------~~~~L~~L~ 302 (547)
.+|+.++++.+ .++..+ .....+++|+.|.+.. +.+...+..... +...|++|+
T Consensus 241 ~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLP--EWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchh-hhhcch--HHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 36777777763 334333 4455677888888877 344332221110 245566666
Q ss_pred CCCCCCCChHHHHhhh-------------------------CCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 009004 303 LRDCKNLGDEALRAIS-------------------------SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 303 l~~~~~l~~~~~~~l~-------------------------~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
+..+ .+.+.....+. ..+.|+.|.+.+|.+++..+..+.. +++|+.|+++++
T Consensus 317 L~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 317 LQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYN 393 (1081)
T ss_pred ehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc--ccceeeeeeccc
Confidence 6654 33321111110 1244555555666666655555554 666666666664
Q ss_pred --CCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCC
Q 009004 358 --KRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGS 435 (547)
Q Consensus 358 --~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~ 435 (547)
+.+.+..+..+ +.|++|+++| +.++.... .++ .|+.|++|...+| .+.. +.+++ .++
T Consensus 394 rL~~fpas~~~kl------e~LeeL~LSG-NkL~~Lp~-tva-~~~~L~tL~ahsN-~l~~--fPe~~---------~l~ 452 (1081)
T KOG0618|consen 394 RLNSFPASKLRKL------EELEELNLSG-NKLTTLPD-TVA-NLGRLHTLRAHSN-QLLS--FPELA---------QLP 452 (1081)
T ss_pred ccccCCHHHHhch------HHhHHHhccc-chhhhhhH-HHH-hhhhhHHHhhcCC-ceee--chhhh---------hcC
Confidence 23445555555 5566666666 44442221 111 3556666666555 2221 22333 678
Q ss_pred CccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 009004 436 SIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 436 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.|+.+|++.|. ++...+..... -|+|++|+++||.
T Consensus 453 qL~~lDlS~N~-L~~~~l~~~~p--~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNN-LSEVTLPEALP--SPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccch-hhhhhhhhhCC--CcccceeeccCCc
Confidence 89999999776 77665554433 3899999999996
No 21
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.30 E-value=2.5e-11 Score=105.70 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=109.5
Q ss_pred HhhcCCCCCEEeCCCCCCCChHHHH----hhhCCCCccEEEecCccCChHhHH-------HHHH----hcCCCccEEEeC
Q 009004 291 SLASNTGIKVLDLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVS-------YLRL----TVITSLVKLSLR 355 (547)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~~~~~----~l~~~~~L~~L~l~~~~l~~~~l~-------~l~~----~~~~~L~~L~l~ 355 (547)
++.+||.|+.++++.+ .+...... .+++-..|.+|.+++|.+...+-. .++. ..-|.|+.....
T Consensus 87 aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4457777777777776 45443332 334667778888877755443221 2221 235778888776
Q ss_pred CCCCC--cHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHH----hcCCCCcEEeccCCCCCCHHHHHHHHhccccC
Q 009004 356 GCKRL--TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA----TCRVPISELRVRQCPLIGDTSVIALASMLVDD 429 (547)
Q Consensus 356 ~~~~~--~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 429 (547)
.+.-. +..-.....+.. .+|+++.+.. +.|.+.++..+. ..+.+|+.|++..| .+|..+-..++.++.
T Consensus 166 rNRlengs~~~~a~~l~sh--~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~-- 239 (388)
T COG5238 166 RNRLENGSKELSAALLESH--ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALC-- 239 (388)
T ss_pred cchhccCcHHHHHHHHHhh--cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhc--
Confidence 64321 122223333322 5788888888 688877665443 25788999999888 678777777777666
Q ss_pred ccccCCCccEEecCCCCCCCHHHHHHhhC----CCCCCCcEEEeeCCC
Q 009004 430 DRWYGSSIRLLDLYNCGGITQLAFRWLKK----PYFPRLRWLGVTGSV 473 (547)
Q Consensus 430 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~~L~~L~l~~~~ 473 (547)
.++.|+.|.+.+|- ++..|...+.. ...|+|..|....+.
T Consensus 240 ---~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 240 ---EWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ---ccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhh
Confidence 77788999998886 66655544433 347888888877763
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.1e-11 Score=113.19 Aligned_cols=209 Identities=17% Similarity=0.168 Sum_probs=121.1
Q ss_pred CCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhh-ccCCCcceEEcccccccccccc
Q 009004 125 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI-NQHGKLKHLSLIRSQEFLITYF 203 (547)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~~~ 203 (547)
.+.+|++..|.+..+.+.......+.|++++.|||+.|- -.....+..| ..+|+|+.|+++.+. .
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL--------~~nw~~v~~i~eqLp~Le~LNls~Nr------l 184 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL--------FHNWFPVLKIAEQLPSLENLNLSSNR------L 184 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhh--------HHhHHHHHHHHHhcccchhccccccc------c
Confidence 366777777777666665554555677788888877751 1122233333 377777777775321 1
Q ss_pred cccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 009004 204 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 283 (547)
Q Consensus 204 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (547)
....+... ...+++|+.|.|+.| +++...+..+...+|+|+.|.+..+..+...... ......|++|+|++++.
T Consensus 185 ~~~~~s~~---~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 185 SNFISSNT---TLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNL 258 (505)
T ss_pred cCCccccc---hhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcc
Confidence 11111101 123567888888887 7777777777777888888888775322111111 11234677888887655
Q ss_pred CCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhh------hCCCCccEEEecCccCChHh-HHHHHHhcCCCccEEEeCC
Q 009004 284 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAI------SSLPQLKILLLDGSDISDVG-VSYLRLTVITSLVKLSLRG 356 (547)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l------~~~~~L~~L~l~~~~l~~~~-l~~l~~~~~~~L~~L~l~~ 356 (547)
++.........+|.|..|.++.| ++.+...... ..+|+|++|++..|.+.++. +..+.. +++|+.|.+..
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l~~~~ 335 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHLRITL 335 (505)
T ss_pred cccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhhhccc
Confidence 55554455567777777777776 5554332221 25677777777777664433 333333 56666665443
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.1e-11 Score=110.75 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=24.6
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccC
Q 009004 219 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 280 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (547)
.+|+.+.|.++ .+.+.+.....+.|++++.|+++.+-.-.-..+..++..+|+|+.|.++.
T Consensus 121 kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~ 181 (505)
T KOG3207|consen 121 KKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS 181 (505)
T ss_pred HhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc
Confidence 33444444442 33333222333344444444444432223333334444444444444443
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.96 E-value=2.4e-11 Score=111.58 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=27.1
Q ss_pred cCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 009004 433 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 433 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
++.+|..||+.+|. +.. +....+ .|.+|++|.++|++
T Consensus 503 nm~nL~tLDL~nNd-lq~--IPp~Lg-nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQNND-LQQ--IPPILG-NMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCCCc-hhh--CChhhc-cccceeEEEecCCc
Confidence 66789999999886 332 222222 58999999999997
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.93 E-value=2.1e-09 Score=111.82 Aligned_cols=244 Identities=20% Similarity=0.185 Sum_probs=125.1
Q ss_pred CCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccccc
Q 009004 127 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 206 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 206 (547)
++|+.|.+..|.++. +....++|++|++++|.. +. ++. ..++|++|++..+ .+
T Consensus 222 ~~L~~L~L~~N~Lt~-----LP~lp~~Lk~LdLs~N~L---------ts--LP~--lp~sL~~L~Ls~N---------~L 274 (788)
T PRK15387 222 AHITTLVIPDNNLTS-----LPALPPELRTLEVSGNQL---------TS--LPV--LPPGLLELSIFSN---------PL 274 (788)
T ss_pred cCCCEEEccCCcCCC-----CCCCCCCCcEEEecCCcc---------Cc--ccC--cccccceeeccCC---------ch
Confidence 467888877776653 122457788888887632 11 111 1356777777421 11
Q ss_pred ChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 009004 207 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 286 (547)
Q Consensus 207 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 286 (547)
. .+....++|+.|+++++ .+... ....++|+.|++++| .++... ....+|+.|+++++ .++.
T Consensus 275 ~-----~Lp~lp~~L~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~N-~L~~Lp-----~lp~~L~~L~Ls~N-~L~~ 336 (788)
T PRK15387 275 T-----HLPALPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDN-QLASLP-----ALPSELCKLWAYNN-QLTS 336 (788)
T ss_pred h-----hhhhchhhcCEEECcCC-ccccc-----cccccccceeECCCC-ccccCC-----CCcccccccccccC-cccc
Confidence 1 11122356777777774 44422 112466777777764 333211 12235667777663 3332
Q ss_pred HHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHH
Q 009004 287 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 366 (547)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~ 366 (547)
.+ . ..++|+.|++++| .+...+ . ..++|+.|++++|.++.. . . ..++|+.|+++++. ++. +.
T Consensus 337 LP--~--lp~~Lq~LdLS~N-~Ls~LP--~--lp~~L~~L~Ls~N~L~~L--P---~-l~~~L~~LdLs~N~-Lt~--LP 398 (788)
T PRK15387 337 LP--T--LPSGLQELSVSDN-QLASLP--T--LPSELYKLWAYNNRLTSL--P---A-LPSGLKELIVSGNR-LTS--LP 398 (788)
T ss_pred cc--c--cccccceEecCCC-ccCCCC--C--CCcccceehhhccccccC--c---c-cccccceEEecCCc-ccC--CC
Confidence 11 1 1246777777776 444321 1 135667777777665531 1 1 23457777776643 331 11
Q ss_pred HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 009004 367 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
.. . ++|+.|++++ +.++.. .. ...+|+.|++++| .++... ..+. .+++|+.|+|++|+
T Consensus 399 ~l---~--s~L~~LdLS~-N~LssI--P~---l~~~L~~L~Ls~N-qLt~LP-~sl~---------~L~~L~~LdLs~N~ 456 (788)
T PRK15387 399 VL---P--SELKELMVSG-NRLTSL--PM---LPSGLLSLSVYRN-QLTRLP-ESLI---------HLSSETTVNLEGNP 456 (788)
T ss_pred Cc---c--cCCCEEEccC-CcCCCC--Cc---chhhhhhhhhccC-cccccC-hHHh---------hccCCCeEECCCCC
Confidence 11 1 5677777777 345421 11 1235666777766 454221 1122 55667777777776
Q ss_pred CCCHHHHHHh
Q 009004 447 GITQLAFRWL 456 (547)
Q Consensus 447 ~i~~~~~~~l 456 (547)
++......+
T Consensus 457 -Ls~~~~~~L 465 (788)
T PRK15387 457 -LSERTLQAL 465 (788)
T ss_pred -CCchHHHHH
Confidence 665544443
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.92 E-value=5.6e-08 Score=85.20 Aligned_cols=214 Identities=22% Similarity=0.210 Sum_probs=128.8
Q ss_pred CCCccEEEccCCCCCCHHHHHHhh----cCCCCCEEeCCCC--CCCChH-------HHHhhhCCCCccEEEecCccCChH
Q 009004 270 SLSLTHVCLRWCNLLTNHAIKSLA----SNTGIKVLDLRDC--KNLGDE-------ALRAISSLPQLKILLLDGSDISDV 336 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~--~~l~~~-------~~~~l~~~~~L~~L~l~~~~l~~~ 336 (547)
...++.+++++ +.++......++ +-.+|+..+++.. ....+. -+.++.+||+|+..+|+.|.+...
T Consensus 29 ~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 34555555555 344444444433 3345555555431 011111 134556899999999999966554
Q ss_pred hHH---HHHHhcCCCccEEEeCCCCCCcHH-------HHHHHhcc---CCCCCccEEecCCCCCCCH---HHHHHHHhcC
Q 009004 337 GVS---YLRLTVITSLVKLSLRGCKRLTDK-------CISALFDG---TSKLQLQELDLSNLPHLSD---NGILTLATCR 400 (547)
Q Consensus 337 ~l~---~l~~~~~~~L~~L~l~~~~~~~~~-------~~~~l~~~---~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~ 400 (547)
... .+.. ....|.+|.+.+|. +.+. .+..++.. ...|.|+++..+. +.+.. .-.....+.-
T Consensus 108 ~~e~L~d~is-~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh 184 (388)
T COG5238 108 FPEELGDLIS-SSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESH 184 (388)
T ss_pred cchHHHHHHh-cCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhh
Confidence 433 2333 47889999999875 4321 22233322 2238899998887 55542 2222333333
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCC--CCCCcEEEeeCCC-CHHH
Q 009004 401 VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPY--FPRLRWLGVTGSV-NRDI 477 (547)
Q Consensus 401 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~--~~~L~~L~l~~~~-~~~~ 477 (547)
.+|+.+.+..| .|...|+..++..-.. .+++|+.|||.+|. +|..+-..+.... .|.|+.|.+.+|. +...
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~----y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLF----YSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHH----HhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 68999999998 7877766555322111 78999999999997 8877666555522 4578999999995 3333
Q ss_pred HHHHHh-----hCCCcEeecc
Q 009004 478 LDALAR-----SRPFLNVACR 493 (547)
Q Consensus 478 ~~~~~~-----~~~~l~~~~~ 493 (547)
+.++.. .+|++.....
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~ 279 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPG 279 (388)
T ss_pred HHHHHHHhhhhcCCCcccccc
Confidence 333322 4666665443
No 27
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.89 E-value=7.3e-11 Score=108.45 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=66.5
Q ss_pred hhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc--HHHHHHHhccCCCCCccEEecCCCCCCC---HH
Q 009004 317 ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLS---DN 391 (547)
Q Consensus 317 l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~---~~ 391 (547)
+..+++|..|++++|.+.+..... .. +..|+.|+++.+. +. +..+..+ ..|+.+-.++ +++. ..
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~-~~--lv~Lq~LnlS~Nr-Fr~lP~~~y~l------q~lEtllas~-nqi~~vd~~ 499 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEM-GS--LVRLQTLNLSFNR-FRMLPECLYEL------QTLETLLASN-NQIGSVDPS 499 (565)
T ss_pred HHhhhcceeeecccchhhhcchhh-hh--hhhhheecccccc-cccchHHHhhH------HHHHHHHhcc-ccccccChH
Confidence 456788999999888665544432 22 4568889888752 33 3333333 2344444443 4554 33
Q ss_pred HHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCC
Q 009004 392 GILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 449 (547)
Q Consensus 392 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 449 (547)
++. .+.+|..|++.+|. + ..+...+. ++.+|++|+|.+|+ +.
T Consensus 500 ~l~----nm~nL~tLDL~nNd-l-----q~IPp~Lg-----nmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 500 GLK----NMRNLTTLDLQNND-L-----QQIPPILG-----NMTNLRHLELDGNP-FR 541 (565)
T ss_pred Hhh----hhhhcceeccCCCc-h-----hhCChhhc-----cccceeEEEecCCc-cC
Confidence 343 67899999999884 2 33333222 88999999999998 54
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.88 E-value=6.2e-09 Score=107.89 Aligned_cols=214 Identities=19% Similarity=0.208 Sum_probs=148.5
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccc--cchh-hhhhh-c--cCCCcceEEcccccccc
Q 009004 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNS-GLQQI-N--QHGKLKHLSLIRSQEFL 199 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~-~l~~l-~--~~~~L~~L~l~~~~~~~ 199 (547)
.-+++..++.+..+....+..+.+. .|++|.+++....+.+.... +... .+..+ . .-.+|++|+++|
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~--~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G----- 131 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQ--DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG----- 131 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhc--cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc-----
Confidence 4567788888777777777766532 38999888764333332111 1110 11111 1 457899999954
Q ss_pred cccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEcc
Q 009004 200 ITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLR 279 (547)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 279 (547)
...+.......++..+|+|++|.+.+. .+....+..++.++|+|..||++++ ++++. .-...+++|+.|.+.
T Consensus 132 ---~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 132 ---SELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMR 203 (699)
T ss_pred ---cchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhcc
Confidence 445566667778888999999999994 5555558888999999999999984 55544 233456899999998
Q ss_pred CCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHH-HH----hhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEe
Q 009004 280 WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEA-LR----AISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL 354 (547)
Q Consensus 280 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~----~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l 354 (547)
+-.-.+...+..+..+++|+.||++......... +. .-..+|+||.|+.+++.+....+..+.. .-|+|+.+.+
T Consensus 204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L~~i~~ 282 (699)
T KOG3665|consen 204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNLQQIAA 282 (699)
T ss_pred CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccHhhhhh
Confidence 8555555667777889999999999865444431 11 1126899999999999999888887776 5677766654
Q ss_pred C
Q 009004 355 R 355 (547)
Q Consensus 355 ~ 355 (547)
.
T Consensus 283 ~ 283 (699)
T KOG3665|consen 283 L 283 (699)
T ss_pred h
Confidence 4
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.80 E-value=7.4e-09 Score=107.85 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=61.8
Q ss_pred ccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHHHH
Q 009004 5 TLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVW 84 (547)
Q Consensus 5 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 84 (547)
+-..|+|+++. ++.. ...+. ++|+.|++.+ +.++ .+....++|++|++++|....-+
T Consensus 202 ~~~~LdLs~~~-LtsL-P~~l~---~~L~~L~L~~------N~Lt-----~LP~lp~~Lk~LdLs~N~LtsLP------- 258 (788)
T PRK15387 202 GNAVLNVGESG-LTTL-PDCLP---AHITTLVIPD------NNLT-----SLPALPPELRTLEVSGNQLTSLP------- 258 (788)
T ss_pred CCcEEEcCCCC-CCcC-Ccchh---cCCCEEEccC------CcCC-----CCCCCCCCCcEEEecCCccCccc-------
Confidence 34567888774 5431 11232 4788888874 3344 12234678999998876442111
Q ss_pred HHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCC
Q 009004 85 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 162 (547)
Q Consensus 85 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 162 (547)
..+++|++|++.......++.. .++|+.|+++.|.+.. + ....++|+.|++++|
T Consensus 259 -~lp~sL~~L~Ls~N~L~~Lp~l------------------p~~L~~L~Ls~N~Lt~--L---P~~p~~L~~LdLS~N 312 (788)
T PRK15387 259 -VLPPGLLELSIFSNPLTHLPAL------------------PSGLCKLWIFGNQLTS--L---PVLPPGLQELSVSDN 312 (788)
T ss_pred -CcccccceeeccCCchhhhhhc------------------hhhcCEEECcCCcccc--c---cccccccceeECCCC
Confidence 1236788888776544433332 3456666666665543 1 113456777777665
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.4e-09 Score=96.23 Aligned_cols=209 Identities=18% Similarity=0.154 Sum_probs=125.2
Q ss_pred HHhcCCCccEEEccCCCCCCHHH-HHH-hhcCCCCCEEeCCCCCCCChHHHHhh-hCCCCccEEEecCccCChHhHHHHH
Q 009004 266 ISATSLSLTHVCLRWCNLLTNHA-IKS-LASNTGIKVLDLRDCKNLGDEALRAI-SSLPQLKILLLDGSDISDVGVSYLR 342 (547)
Q Consensus 266 ~~~~~~~L~~L~l~~~~~l~~~~-~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l-~~~~~L~~L~l~~~~l~~~~l~~l~ 342 (547)
+...+..++.+++.+ +.++++. +.+ +.++|.|+.|+++.+ .+.. .+..+ ....+|+.|-|.+..+.......+.
T Consensus 66 ~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 333444555555555 3443322 111 225566666666554 3322 12222 2445666666666666655555555
Q ss_pred HhcCCCccEEEeCCCC----CCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHH
Q 009004 343 LTVITSLVKLSLRGCK----RLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 418 (547)
Q Consensus 343 ~~~~~~L~~L~l~~~~----~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 418 (547)
. .+|+++.|+++.++ ++.+...+... +.+++|++..|...-......+.+.+|++..+.+..|| +.+..
T Consensus 143 ~-~lP~vtelHmS~N~~rq~n~Dd~c~e~~s-----~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 143 D-DLPKVTELHMSDNSLRQLNLDDNCIEDWS-----TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred h-cchhhhhhhhccchhhhhccccccccccc-----hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh
Confidence 5 56777777666541 23344444442 67888888888665566666777788999999999886 44444
Q ss_pred HHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCCCHHHHHH------HHhhCCCcEeec
Q 009004 419 VIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDA------LARSRPFLNVAC 492 (547)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~l~~~~ 492 (547)
-+.-+. .+|.+--|+++.+.--+...+..+.. +|+|+-|.+..++-.+.+.- +..+.|++++..
T Consensus 216 ~ek~se--------~~p~~~~LnL~~~~idswasvD~Ln~--f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 216 SEKGSE--------PFPSLSCLNLGANNIDSWASVDALNG--FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hcccCC--------CCCcchhhhhcccccccHHHHHHHcC--CchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 444333 66778888888876334577888876 99999999999873332222 233556666655
Q ss_pred cC
Q 009004 493 RG 494 (547)
Q Consensus 493 ~~ 494 (547)
.+
T Consensus 286 Gs 287 (418)
T KOG2982|consen 286 GS 287 (418)
T ss_pred Cc
Confidence 44
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.75 E-value=6.3e-10 Score=102.25 Aligned_cols=243 Identities=18% Similarity=0.155 Sum_probs=139.7
Q ss_pred ccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccC
Q 009004 201 TYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 280 (547)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (547)
+....+++..+ ..+++|+.|+|+. ++|...+... +++++.|..|.+.+++++++..-.. +..+..|+.|.+.-
T Consensus 77 N~I~~iP~~aF----~~l~~LRrLdLS~-N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~-F~gL~slqrLllNa 149 (498)
T KOG4237|consen 77 NQISSIPPGAF----KTLHRLRRLDLSK-NNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGA-FGGLSSLQRLLLNA 149 (498)
T ss_pred CCcccCChhhc----cchhhhceecccc-cchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhH-hhhHHHHHHHhcCh
Confidence 44556665554 4577899999998 4776665544 6678888888888777777765543 33445777777765
Q ss_pred CCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCcc-CChHhHHHHHH---------hcC----
Q 009004 281 CNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD-ISDVGVSYLRL---------TVI---- 346 (547)
Q Consensus 281 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~-l~~~~l~~l~~---------~~~---- 346 (547)
+.+.-....++..+++|..|.++.+ .+....-..+..+..++.+.+..|. +.+-.+..++. ..+
T Consensus 150 -n~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 150 -NHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred -hhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 3444455556677888888888876 4444444456677888888877764 22211111110 000
Q ss_pred ------------------CCccEE--E-eCCCCCC---cHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCC
Q 009004 347 ------------------TSLVKL--S-LRGCKRL---TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP 402 (547)
Q Consensus 347 ------------------~~L~~L--~-l~~~~~~---~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 402 (547)
..++.+ . .+.|.-. +...+.. +++|+.|++++ +.++...-.++. ....
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~------L~~L~~lnlsn-N~i~~i~~~aFe-~~a~ 299 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK------LPNLRKLNLSN-NKITRIEDGAFE-GAAE 299 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh------cccceEeccCC-Cccchhhhhhhc-chhh
Confidence 001111 0 0011000 0111111 26777777777 566533222222 4566
Q ss_pred CcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 009004 403 ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 403 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
++.|.+..| .+.. +....+. ++..|+.|+|++|+ |+.....+|.. ..+|..|.+-+|+
T Consensus 300 l~eL~L~~N-~l~~-----v~~~~f~----~ls~L~tL~L~~N~-it~~~~~aF~~--~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 300 LQELYLTRN-KLEF-----VSSGMFQ----GLSGLKTLSLYDNQ-ITTVAPGAFQT--LFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhcCcc-hHHH-----HHHHhhh----ccccceeeeecCCe-eEEEecccccc--cceeeeeehccCc
Confidence 777777666 2322 2222222 67788888888886 77666666654 6688888877775
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.73 E-value=4.9e-08 Score=101.37 Aligned_cols=157 Identities=21% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCCEEeCCCCCCCChHHHHhhh-CCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc-HHHHHHHhccCC
Q 009004 296 TGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTS 373 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~ 373 (547)
.+|+.|++++...+...-+..++ .+|.|++|.+.+-.+....+..+.. .+|+|..|++++++ ++ -.++..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~-sFpNL~sLDIS~Tn-I~nl~GIS~L----- 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA-SFPNLRSLDISGTN-ISNLSGISRL----- 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhh-ccCccceeecCCCC-ccCcHHHhcc-----
Confidence 45555555543333222222232 3555555555554443333444444 45555555555543 22 2333333
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHHhccccCccccCCCccEEecCCCCCCCHHH
Q 009004 374 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 452 (547)
Q Consensus 374 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 452 (547)
++|+.|.+.+..--+...+..++ .+++|+.|+++.-....+. .+...... ++.+|+|+.||.++.. ++...
T Consensus 195 -knLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec-----~~~LpeLrfLDcSgTd-i~~~~ 266 (699)
T KOG3665|consen 195 -KNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLEC-----GMVLPELRFLDCSGTD-INEEI 266 (699)
T ss_pred -ccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHh-----cccCccccEEecCCcc-hhHHH
Confidence 45555555543222223333333 3555555555544322222 11111111 1145555555555544 44444
Q ss_pred HHHhhCCCCCCCcEEE
Q 009004 453 FRWLKKPYFPRLRWLG 468 (547)
Q Consensus 453 ~~~l~~~~~~~L~~L~ 468 (547)
+..+.. .-|+|+.+.
T Consensus 267 le~ll~-sH~~L~~i~ 281 (699)
T KOG3665|consen 267 LEELLN-SHPNLQQIA 281 (699)
T ss_pred HHHHHH-hCccHhhhh
Confidence 444444 344444443
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.59 E-value=2.1e-07 Score=97.67 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=17.5
Q ss_pred CCccEEEeeccCCChhHHHHHHhcCCCccEEecCCC
Q 009004 127 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 162 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 162 (547)
++|+.|++++|.++.-. .. .+++|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP-~~---l~~nL~~L~Ls~N 230 (754)
T PRK15370 199 EQITTLILDNNELKSLP-EN---LQGNIKTLYANSN 230 (754)
T ss_pred cCCcEEEecCCCCCcCC-hh---hccCCCEEECCCC
Confidence 45666776666555311 11 1246677777665
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=1.3e-07 Score=99.24 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=68.6
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccE
Q 009004 272 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 351 (547)
Q Consensus 272 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 351 (547)
+|+.|++++ +.+...+- .+ .++|+.|++++| .++.... . -.++|+.|++++|.++..... ..++|+.
T Consensus 263 ~L~~L~Ls~-N~L~~LP~-~l--~~sL~~L~Ls~N-~Lt~LP~-~--lp~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~ 329 (754)
T PRK15370 263 ALQSLDLFH-NKISCLPE-NL--PEELRYLSVYDN-SIRTLPA-H--LPSGITHLNVQSNSLTALPET-----LPPGLKT 329 (754)
T ss_pred CCCEEECcC-CccCcccc-cc--CCCCcEEECCCC-ccccCcc-c--chhhHHHHHhcCCccccCCcc-----cccccee
Confidence 556666654 33332111 11 235666666655 3332110 0 113455566666555432110 1345666
Q ss_pred EEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCcc
Q 009004 352 LSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDR 431 (547)
Q Consensus 352 L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 431 (547)
|++++|. ++... ..+ + ++|+.|+++++ .++.... . ..++|+.|++++| .++...- .+.
T Consensus 330 L~Ls~N~-Lt~LP-~~l---~--~sL~~L~Ls~N-~L~~LP~-~---lp~~L~~LdLs~N-~Lt~LP~-~l~-------- 387 (754)
T PRK15370 330 LEAGENA-LTSLP-ASL---P--PELQVLDVSKN-QITVLPE-T---LPPTITTLDVSRN-ALTNLPE-NLP-------- 387 (754)
T ss_pred ccccCCc-cccCC-hhh---c--CcccEEECCCC-CCCcCCh-h---hcCCcCEEECCCC-cCCCCCH-hHH--------
Confidence 6665543 22100 011 1 45666666663 3431110 0 1245666666666 3332110 111
Q ss_pred ccCCCccEEecCCCCCCCHH--HHHHhhCCCCCCCcEEEeeCCC
Q 009004 432 WYGSSIRLLDLYNCGGITQL--AFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 432 ~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
++|+.|++++|. ++.. .+..+.. .+|++..|.+.+|+
T Consensus 388 ---~sL~~LdLs~N~-L~~LP~sl~~~~~-~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 ---AALQIMQASRNN-LVRLPESLPHFRG-EGPQPTRIIVEYNP 426 (754)
T ss_pred ---HHHHHHhhccCC-cccCchhHHHHhh-cCCCccEEEeeCCC
Confidence 235566666654 4321 1222222 34566666666665
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.51 E-value=1e-08 Score=94.38 Aligned_cols=269 Identities=15% Similarity=0.136 Sum_probs=135.4
Q ss_pred CCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccc
Q 009004 123 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 202 (547)
Q Consensus 123 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 202 (547)
++.+++|++|+|+.|.|......++. +++++.+|-+.++. .+++..-..+.++..|+.|.+.. ..
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~N--------kI~~l~k~~F~gL~slqrLllNa------n~ 151 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNN--------KITDLPKGAFGGLSSLQRLLLNA------NH 151 (498)
T ss_pred ccchhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCC--------chhhhhhhHhhhHHHHHHHhcCh------hh
Confidence 56678888888888877766555543 77777777666632 44544444555666667666632 11
Q ss_pred ccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCC
Q 009004 203 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 282 (547)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 282 (547)
+.-+. ......+++|..|.+..+ .+... ....++.+.+++.+.+..++.+.+-.+....... .......++..
T Consensus 152 i~Cir----~~al~dL~~l~lLslyDn-~~q~i-~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~-a~~~ietsgar 224 (498)
T KOG4237|consen 152 INCIR----QDALRDLPSLSLLSLYDN-KIQSI-CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL-AMNPIETSGAR 224 (498)
T ss_pred hcchh----HHHHHHhhhcchhcccch-hhhhh-ccccccchhccchHhhhcCccccccccchhhhHH-hhchhhcccce
Confidence 22222 222244666776766652 22111 1112334566666666655533332222111100 00000011100
Q ss_pred CCCH----------HHHHHhhcCCCCCEE---eCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCc
Q 009004 283 LLTN----------HAIKSLASNTGIKVL---DLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 349 (547)
Q Consensus 283 ~l~~----------~~~~~l~~~~~L~~L---~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L 349 (547)
.... .....+ ..+++.+ -.+.|......+...|..+++|++|++++|.++...-.++.. ..++
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~--~a~l 300 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKF--LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG--AAEL 300 (498)
T ss_pred ecchHHHHHHHhcccchhhh--hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc--hhhh
Confidence 0000 000000 1112222 111221222233455778889999999888887766655554 6778
Q ss_pred cEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHH
Q 009004 350 VKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALA 423 (547)
Q Consensus 350 ~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 423 (547)
+.|.+..+. +....-. ++.+ +..|+.|++.+ ++|+.....++ ....+|.+|++-.||.--+--+..+.
T Consensus 301 ~eL~L~~N~-l~~v~~~-~f~~--ls~L~tL~L~~-N~it~~~~~aF-~~~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 301 QELYLTRNK-LEFVSSG-MFQG--LSGLKTLSLYD-NQITTVAPGAF-QTLFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred hhhhcCcch-HHHHHHH-hhhc--cccceeeeecC-CeeEEEecccc-cccceeeeeehccCcccCccchHHHH
Confidence 888887743 3321111 1222 17888899988 67763322222 25677888888877755444444443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=9.4e-08 Score=84.99 Aligned_cols=244 Identities=19% Similarity=0.174 Sum_probs=133.1
Q ss_pred HHHHHHcCCCCcEEEEcCCCCCC------HHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 009004 211 ILLMADKCASMESICLGGFCRVT------DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 211 ~~~l~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 284 (547)
+..+...|.+|..|.+++...-- ..-+..-+..+++|+.+.++.|.. ..+..+...-|.|+.+.+.+. .+
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~---~~i~~~~~~kptl~t~~v~~s-~~ 249 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST---ENIVDIELLKPTLQTICVHNT-TI 249 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch---hheeceeecCchhheeeeecc-cc
Confidence 34445556777777776643211 111111122345677777766532 222222233466777766652 22
Q ss_pred CHHHHHHhhcCCCCCEEeCCCCCCCChHHH--HhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH
Q 009004 285 TNHAIKSLASNTGIKVLDLRDCKNLGDEAL--RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 362 (547)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~ 362 (547)
.+... + .|-=...+.+....-+..+. ..+....-|+.+++++|.|+...-. .. ..|+++.|+++++.-..-
T Consensus 250 ~~~~~--l--~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDES--vK-L~Pkir~L~lS~N~i~~v 322 (490)
T KOG1259|consen 250 QDVPS--L--LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDES--VK-LAPKLRRLILSQNRIRTV 322 (490)
T ss_pred ccccc--c--cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhh--hh-hccceeEEeccccceeee
Confidence 11110 1 11111122222111111111 1112346788999999977653322 22 478999999998653334
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCH-HHHHHHHhccccCccccCCCccEEe
Q 009004 363 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD-TSVIALASMLVDDDRWYGSSIRLLD 441 (547)
Q Consensus 363 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~~~~~~~L~~L~ 441 (547)
..+..+ ++|..|++++ +.++ .+..+...+.+++.|.+++|. +.+ .|+. .+-+|..||
T Consensus 323 ~nLa~L------~~L~~LDLS~-N~Ls--~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~------------KLYSLvnLD 380 (490)
T KOG1259|consen 323 QNLAEL------PQLQLLDLSG-NLLA--ECVGWHLKLGNIKTLKLAQNK-IETLSGLR------------KLYSLVNLD 380 (490)
T ss_pred hhhhhc------ccceEeeccc-chhH--hhhhhHhhhcCEeeeehhhhh-HhhhhhhH------------hhhhheecc
Confidence 445555 8999999999 5553 222233357899999999983 432 2333 334599999
Q ss_pred cCCCCCCCH-HHHHHhhCCCCCCCcEEEeeCCC-------CHHHHHHHHhhCCCcEe
Q 009004 442 LYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSV-------NRDILDALARSRPFLNV 490 (547)
Q Consensus 442 l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~l~~ 490 (547)
+++|+ |.. ..+..+- .+|-|+.+.+.+|+ .....+.|.++...+..
T Consensus 381 l~~N~-Ie~ldeV~~IG--~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~L 434 (490)
T KOG1259|consen 381 LSSNQ-IEELDEVNHIG--NLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISL 434 (490)
T ss_pred ccccc-hhhHHHhcccc--cccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheec
Confidence 99997 654 3344443 48999999999997 23455555555554443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.38 E-value=2.8e-08 Score=84.38 Aligned_cols=128 Identities=25% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc-HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhc
Q 009004 321 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 399 (547)
Q Consensus 321 ~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 399 (547)
.++++|+|.++.|+.. ..+.. .+.+|+.|+++++. ++ -+++..+ ++|++|++++ +.|+..+- .+...
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~-~l~~L~~L~Ls~N~-I~~l~~l~~L------~~L~~L~L~~-N~I~~i~~-~l~~~ 86 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGA-TLDKLEVLDLSNNQ-ITKLEGLPGL------PRLKTLDLSN-NRISSISE-GLDKN 86 (175)
T ss_dssp -------------------S--T-T-TT--EEE-TTS---S--TT----------TT--EEE--S-S---S-CH-HHHHH
T ss_pred cccccccccccccccc--cchhh-hhcCCCEEECCCCC-CccccCccCh------hhhhhcccCC-CCCCcccc-chHHh
Confidence 3445555555544331 12221 24455555555543 22 1222222 5666666666 45543211 12223
Q ss_pred CCCCcEEeccCCCCCCHHH-HHHHHhccccCccccCCCccEEecCCCCCCCH-HHHHHhhCCCCCCCcEEEeeC
Q 009004 400 RVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTG 471 (547)
Q Consensus 400 ~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~ 471 (547)
+|+|+.|.+++| .+.+.. +..+. .+++|+.|++.+|+ ++. ...+.+.-..+|+|+.|+-..
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~---------~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLS---------SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGG---------G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCC-cCCChHHhHHHH---------cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 566666666665 333321 12222 55666666666666 432 111111112366666665443
No 38
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=7.4e-07 Score=75.03 Aligned_cols=104 Identities=23% Similarity=0.327 Sum_probs=66.7
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHH
Q 009004 376 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 455 (547)
Q Consensus 376 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 455 (547)
.++.++-++ ..|...|+..+. .++.++.|.+.+|..+.|.++..++. -.++|+.|+|++|+.||+.|+..
T Consensus 102 ~IeaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHH
Confidence 356666666 356666666554 46667777777777777777777766 55677777777777777777777
Q ss_pred hhCCCCCCCcEEEeeCCC---CHH-HHHHHHhhCCCcEee
Q 009004 456 LKKPYFPRLRWLGVTGSV---NRD-ILDALARSRPFLNVA 491 (547)
Q Consensus 456 l~~~~~~~L~~L~l~~~~---~~~-~~~~~~~~~~~l~~~ 491 (547)
+.. +++|+.|.+.+-+ +.+ +...+....|+..+.
T Consensus 172 L~~--lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 172 LLK--LKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHH--hhhhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 665 7777777666654 222 333445567766654
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=8.3e-07 Score=79.05 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=96.9
Q ss_pred HHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHH
Q 009004 211 ILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIK 290 (547)
Q Consensus 211 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 290 (547)
...+...++.+++++|.++.-.....+..++.++|+|+.|+++.+.--.+ +..+.....+|+.|.+.+ ..++.....
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lVLNg-T~L~w~~~~ 139 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLVLNG-TGLSWTQST 139 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEEEcC-CCCChhhhh
Confidence 44556667777777777743334455677777777777777776432111 111111234677777766 344333222
Q ss_pred -HhhcCCCCCEEeCCCCCCCC-----hHHHHhhhCCCCccEEEecCccC-ChHhHHHHHHhcCCCccEEEeCCCCCCcHH
Q 009004 291 -SLASNTGIKVLDLRDCKNLG-----DEALRAISSLPQLKILLLDGSDI-SDVGVSYLRLTVITSLVKLSLRGCKRLTDK 363 (547)
Q Consensus 291 -~l~~~~~L~~L~l~~~~~l~-----~~~~~~l~~~~~L~~L~l~~~~l-~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~ 363 (547)
.+..+|.++.|.++.+ .+. +..... --+.+++|++..|.. .......+.. .+|++..+.+..|. +.+.
T Consensus 140 s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-lK~~ 214 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDN-SLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-LKTE 214 (418)
T ss_pred hhhhcchhhhhhhhccc-hhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-ccch
Confidence 2335566666666554 111 111110 123455555555522 1122233344 57777777776664 3322
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCC-HHHHHHHHhcCCCCcEEeccCCC
Q 009004 364 CISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
.-..-.. +.|.+-.|.++. ++|. ...+.++. .++.|..|.++++|
T Consensus 215 s~ek~se--~~p~~~~LnL~~-~~idswasvD~Ln-~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 215 SSEKGSE--PFPSLSCLNLGA-NNIDSWASVDALN-GFPQLVDLRVSENP 260 (418)
T ss_pred hhcccCC--CCCcchhhhhcc-cccccHHHHHHHc-CCchhheeeccCCc
Confidence 2222221 125566666766 4554 34444444 46777777777775
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=4.9e-07 Score=80.57 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=67.6
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc-HHHHHHHhccC
Q 009004 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGT 372 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~ 372 (547)
.+..|+.++++++ .++... ..+.-.|.++.|++++|.+...+ .++. +++|+.|+++++. ++ -.++..-.
T Consensus 282 TWq~LtelDLS~N-~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~--nLa~--L~~L~~LDLS~N~-Ls~~~Gwh~KL--- 351 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQID-ESVKLAPKLRRLILSQNRIRTVQ--NLAE--LPQLQLLDLSGNL-LAECVGWHLKL--- 351 (490)
T ss_pred hHhhhhhcccccc-chhhhh-hhhhhccceeEEeccccceeeeh--hhhh--cccceEeecccch-hHhhhhhHhhh---
Confidence 3455666677665 333211 22234577777777777654432 2333 6667777777643 33 23332211
Q ss_pred CCCCccEEecCCCCCCCH-HHHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHHhccccCccccCCCccEEecCCCC
Q 009004 373 SKLQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 373 ~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
-+++.|.+++ +.+.+ .++. .+-+|..|++++| ++... .+..+. .+|.|+.+.+.+|+
T Consensus 352 --GNIKtL~La~-N~iE~LSGL~----KLYSLvnLDl~~N-~Ie~ldeV~~IG---------~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 --GNIKTLKLAQ-NKIETLSGLR----KLYSLVNLDLSSN-QIEELDEVNHIG---------NLPCLETLRLTGNP 410 (490)
T ss_pred --cCEeeeehhh-hhHhhhhhhH----hhhhheecccccc-chhhHHHhcccc---------cccHHHHHhhcCCC
Confidence 4677777777 44432 2222 3456777777777 34322 333333 66777777777776
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=2.8e-06 Score=72.30 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 009004 219 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 298 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 298 (547)
.++++|+|.++ .++. +..+...+.+|+.|++++|. ++... . ...++.|+.|++++ +.++..+-.....+|+|
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~l~--~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQ-ITKLE--G-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T--T-----TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred ccccccccccc-cccc--ccchhhhhcCCCEEECCCCC-Ccccc--C-ccChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence 34555666553 3322 12222234556666666542 22111 0 11245666666666 44433211111245667
Q ss_pred CEEeCCCCCCCCh-HHHHhhhCCCCccEEEecCccCChHh-HHHHHHhcCCCccEEEeC
Q 009004 299 KVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISDVG-VSYLRLTVITSLVKLSLR 355 (547)
Q Consensus 299 ~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~l~~~~-l~~l~~~~~~~L~~L~l~ 355 (547)
+.|.++++ .+.+ ..+..++.+|+|+.|++.+|.++... .....-..+|+|+.|+-.
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77777666 4433 23455566777777777777554322 111111136777777543
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=4.2e-06 Score=70.58 Aligned_cols=87 Identities=30% Similarity=0.431 Sum_probs=54.5
Q ss_pred CccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 009004 322 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 401 (547)
Q Consensus 322 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 401 (547)
.++.++-+++.|..+++..+.. ++.++.|.+.+|..+.|.++..+.. ..++|+.|++++|+.|++.++..+. .++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~-~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLL-KLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHH-Hhh
Confidence 3455666666666667666665 6666666666666666666666654 2266666666666666666666555 356
Q ss_pred CCcEEeccCCCC
Q 009004 402 PISELRVRQCPL 413 (547)
Q Consensus 402 ~L~~L~l~~~~~ 413 (547)
+|+.|.+.+-+.
T Consensus 177 nLr~L~l~~l~~ 188 (221)
T KOG3864|consen 177 NLRRLHLYDLPY 188 (221)
T ss_pred hhHHHHhcCchh
Confidence 666666655443
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.93 E-value=6.7e-06 Score=81.99 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=172.5
Q ss_pred ccEEEeeccCCChhHHHHHHh---cCCCccEEecCCCCCCCCccccccchhhhhhhc----cC-CCcceEEccccccccc
Q 009004 129 IQKLCLSVDYITDAMVGTISQ---GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QH-GKLKHLSLIRSQEFLI 200 (547)
Q Consensus 129 L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~----~~-~~L~~L~l~~~~~~~~ 200 (547)
+..|.|..+.+.+.....+.+ ..++|+.|++++| .+.+.+...+. .. ..|++|.+..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n---------~l~~~g~~~l~~~l~~~~~~l~~L~l~~c----- 154 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN---------NLGDEGARLLCEGLRLPQCLLQTLELVSC----- 154 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC---------CCccHhHHHHHhhcccchHHHHHHHhhcc-----
Confidence 777888888888877777666 4568889999987 45566666553 22 45666666421
Q ss_pred ccccccChHH---HHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHH-------cCCCCcEEEecCCCCCCHHHHHH---HH
Q 009004 201 TYFRRVNDLG---ILLMADKCASMESICLGGFCRVTDTGFKTILH-------SCSNLYKLRVSHGTQLTDLVFHD---IS 267 (547)
Q Consensus 201 ~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~---~~ 267 (547)
.++..+ +......+..++.++++.+ .+...+...+.+ ...+++.|++++|. ++...... ..
T Consensus 155 ----~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l 228 (478)
T KOG4308|consen 155 ----SLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVL 228 (478)
T ss_pred ----cccccchHHHHHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHH
Confidence 222222 2222233778888888875 333333333222 24568888888764 34433332 22
Q ss_pred hcCCC-ccEEEccCCCCCCHHHHHHhh----cC-CCCCEEeCCCCCCCChHHHHhhh----CCCCccEEEecCccCChHh
Q 009004 268 ATSLS-LTHVCLRWCNLLTNHAIKSLA----SN-TGIKVLDLRDCKNLGDEALRAIS----SLPQLKILLLDGSDISDVG 337 (547)
Q Consensus 268 ~~~~~-L~~L~l~~~~~l~~~~~~~l~----~~-~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~l~~~~ 337 (547)
...+. +..|++.. +.+.+.++..+. .+ +.++++++..| .+++.+...+. .++.++.|.++.|.+++.+
T Consensus 229 ~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 229 ASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 33334 56677777 566666555443 33 56788888887 67666555443 6778888888888887776
Q ss_pred HHHHHHh--cCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhc----CCCCcEEeccCC
Q 009004 338 VSYLRLT--VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC----RVPISELRVRQC 411 (547)
Q Consensus 338 l~~l~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~ 411 (547)
...+... ....+.++.+.++...+......++..-....+..+...+.+...+.....+... -+.+..+++..+
T Consensus 307 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (478)
T KOG4308|consen 307 VELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQ 386 (478)
T ss_pred HHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhcc
Confidence 6554431 2344555556554444433222222110002222222222244444444333221 123555666555
Q ss_pred CCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhC---CCCCCCcEEEeeCCC
Q 009004 412 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 473 (547)
Q Consensus 412 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 473 (547)
.+.+.+...++.... ..+.++.++++.+. ..+.+...+.. ... .++.+.++.+.
T Consensus 387 -~~~~~~~~~l~~~~~-----~~~~l~~~~l~~n~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 387 -VIEGRGALRLAAQLA-----SNEKLEILDLSLNS-LHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred -ccccHHHHHhhhhhh-----hcchhhhhhhhcCc-cchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 344444444433333 66778888888776 44433333332 123 77777777665
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.84 E-value=1e-05 Score=86.74 Aligned_cols=233 Identities=19% Similarity=0.235 Sum_probs=110.4
Q ss_pred CCCCCccEEEeeccCC-ChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccc
Q 009004 124 SILPGIQKLCLSVDYI-TDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 202 (547)
Q Consensus 124 ~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 202 (547)
..++.|++|-+..+.. -......++..+|.|+.||+++|..+ +. -...|+.+-+|++|++.+. .
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l--------~~-LP~~I~~Li~LryL~L~~t------~ 606 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL--------SK-LPSSIGELVHLRYLDLSDT------G 606 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc--------Cc-CChHHhhhhhhhcccccCC------C
Confidence 3466777777776541 11122223447788888888876322 11 1134556777778877531 1
Q ss_pred ccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCC-CCCHHHHHHHHhcCCCccEEEccCC
Q 009004 203 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWC 281 (547)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~ 281 (547)
...++ .++ ..+..|.+|++........ +..+...+.+|+.|.+.... ..+...+..+ ..+.+|+.+.+...
T Consensus 607 I~~LP-~~l----~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 607 ISHLP-SGL----GNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITIS 678 (889)
T ss_pred ccccc-hHH----HHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecc
Confidence 11111 122 3355677777766432222 13344457778888776543 1222222222 33444444444332
Q ss_pred CCCCHHHHHHhhcCCCCC----EEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHH---h-cCCCccEEE
Q 009004 282 NLLTNHAIKSLASNTGIK----VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL---T-VITSLVKLS 353 (547)
Q Consensus 282 ~~l~~~~~~~l~~~~~L~----~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~---~-~~~~L~~L~ 353 (547)
.. ..+..+...+.|. .+.+.++ ........+..+++|+.|.+.++.+.+..+..... . .++++..+.
T Consensus 679 s~---~~~e~l~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 679 SV---LLLEDLLGMTRLRSLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred hh---HhHhhhhhhHHHHHHhHhhhhccc--ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 11 1111122222222 2222111 11112233446777778877777665433311100 0 133455555
Q ss_pred eCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCC
Q 009004 354 LRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLS 389 (547)
Q Consensus 354 l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~ 389 (547)
+..|....+.....++ |+|+.|.+.+|..+.
T Consensus 754 ~~~~~~~r~l~~~~f~-----~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFA-----PHLTSLSLVSCRLLE 784 (889)
T ss_pred hhccccccccchhhcc-----CcccEEEEecccccc
Confidence 5555544444444443 677777777776554
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.81 E-value=3.7e-06 Score=58.28 Aligned_cols=58 Identities=29% Similarity=0.325 Sum_probs=26.1
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc
Q 009004 272 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 331 (547)
Q Consensus 272 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 331 (547)
+|++|+++++ .+...+...+..+++|++|++++| .+.......|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 4444444442 333333333344455555555544 344433344445555555555444
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.74 E-value=1.7e-05 Score=85.13 Aligned_cols=234 Identities=17% Similarity=0.169 Sum_probs=126.2
Q ss_pred cCCCCcEEEEcCCCC-CCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcC
Q 009004 217 KCASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 295 (547)
Q Consensus 217 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 295 (547)
.++.|++|-+.+... +.. ....++..++.|+.||+++|..+... ...+..+-+|+.|++++ ..+... ...+.++
T Consensus 543 ~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~-t~I~~L-P~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSD-TGISHL-PSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcC--ChHHhhhhhhhcccccC-CCcccc-chHHHHH
Confidence 467788888877422 211 22335677899999999976554432 22344456889999988 455432 2345677
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCcc--CChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCC
Q 009004 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 373 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~--l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (547)
..|.+|++..+..+... ......+++||+|.+.... .+...+..+. .+.+|+.+.+..+.. ..+..+.....
T Consensus 618 k~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~~s~---~~~e~l~~~~~ 691 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITISSV---LLLEDLLGMTR 691 (889)
T ss_pred Hhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeecchh---HhHhhhhhhHH
Confidence 88889988876443332 2233458999999887753 3333334343 366666666644321 11111110000
Q ss_pred -CCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCcccc-CCCccEEecCCCCCCCHH
Q 009004 374 -KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY-GSSIRLLDLYNCGGITQL 451 (547)
Q Consensus 374 -~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~~~~i~~~ 451 (547)
....+.+.+.+|...+ .......+.+|+.|.+.+|. +.+............ . ++++..+.+.+|......
T Consensus 692 L~~~~~~l~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~-~~e~~~~~~~~~~~~----~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKRT---LISSLGSLGNLEELSILDCG-ISEIVIEWEESLIVL----LCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred HHHHhHhhhhcccccce---eecccccccCcceEEEEcCC-Cchhhcccccccchh----hhHHHHHHHHhhcccccccc
Confidence 0122233333322111 11111256788888888884 443322111100000 1 456777777777655544
Q ss_pred HHHHhhCCCCCCCcEEEeeCCC
Q 009004 452 AFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 452 ~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+..+ .|+|+.|.+.+|.
T Consensus 764 ~~~~f----~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 764 TWLLF----APHLTSLSLVSCR 781 (889)
T ss_pred chhhc----cCcccEEEEeccc
Confidence 33332 5788888888886
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.70 E-value=9.6e-06 Score=56.20 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=47.1
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCC
Q 009004 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 358 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~ 358 (547)
|+|++|++++| .+.......|.++++|++|++++|.++......+.. +++|++|+++++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~--l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN--LPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTT--STTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC--CCCCCEEeCcCCc
Confidence 57889999988 787777777888999999999988776655544444 8888888888753
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=2.9e-06 Score=84.77 Aligned_cols=173 Identities=24% Similarity=0.226 Sum_probs=92.5
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcC-----C-----CccEEEccCCCCCCHH
Q 009004 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATS-----L-----SLTHVCLRWCNLLTNH 287 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~-----~L~~L~l~~~~~l~~~ 287 (547)
+.+|+.|.|.+|+--+..|+..+-+ .|++|.=. + +-.++..++..| . .|...+++. +.+..
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~---~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy-N~L~~- 178 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRH---QLEKLICH---N-SLDALRHVFASCGGDISNSPVWNKLATASFSY-NRLVL- 178 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHH---hhhhhhhh---c-cHHHHHHHHHHhccccccchhhhhHhhhhcch-hhHHh-
Confidence 6788888888885444445544433 34444322 1 112222222211 1 222233332 22211
Q ss_pred HHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHH
Q 009004 288 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 367 (547)
Q Consensus 288 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 367 (547)
.-..+.-++.|+.|+|++| .+.+ +..+..|++|++|+|++|.+.... .+....| +|+.|.++++.--+--+++.
T Consensus 179 mD~SLqll~ale~LnLshN-k~~~--v~~Lr~l~~LkhLDlsyN~L~~vp--~l~~~gc-~L~~L~lrnN~l~tL~gie~ 252 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHN-KFTK--VDNLRRLPKLKHLDLSYNCLRHVP--QLSMVGC-KLQLLNLRNNALTTLRGIEN 252 (1096)
T ss_pred HHHHHHHHHHhhhhccchh-hhhh--hHHHHhcccccccccccchhcccc--ccchhhh-hheeeeecccHHHhhhhHHh
Confidence 0112334677888888887 4544 346677888888888887554322 2222123 38888887754333456666
Q ss_pred HhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC
Q 009004 368 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 368 l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
+ .+|+.|++++ +-+.+..-....-.+..|+.|.+.|||
T Consensus 253 L------ksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 L------KSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h------hhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6 7888888887 444432222222235667888888887
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=6.7e-06 Score=82.23 Aligned_cols=201 Identities=20% Similarity=0.190 Sum_probs=115.3
Q ss_pred HHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcE
Q 009004 144 VGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMES 223 (547)
Q Consensus 144 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 223 (547)
+..+...+++++.|.+-..+.- .- .+-..|..+..|++|.+.+ ++--+..++..+.. +|+.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~------~p--t~pi~ifpF~sLr~LElrg--------~~L~~~~GL~~lr~---qLe~ 136 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPAR------DP--TEPISIFPFRSLRVLELRG--------CDLSTAKGLQELRH---QLEK 136 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCC------CC--CCCceeccccceeeEEecC--------cchhhhhhhHHHHH---hhhh
Confidence 4455556777777777664311 11 1122344788999999954 33323344444433 4555
Q ss_pred EEEcCCCCCCHHHHHHHHHcC----------CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh
Q 009004 224 ICLGGFCRVTDTGFKTILHSC----------SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA 293 (547)
Q Consensus 224 L~l~~~~~~~~~~~~~~~~~~----------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 293 (547)
|--.+ -. .++..++..| ..|...+.+++ .+ ..+....+..+.|++|+++. +++.+.. .+.
T Consensus 137 LIC~~---Sl-~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L--~~mD~SLqll~ale~LnLsh-Nk~~~v~--~Lr 206 (1096)
T KOG1859|consen 137 LICHN---SL-DALRHVFASCGGDISNSPVWNKLATASFSYN-RL--VLMDESLQLLPALESLNLSH-NKFTKVD--NLR 206 (1096)
T ss_pred hhhhc---cH-HHHHHHHHHhccccccchhhhhHhhhhcchh-hH--HhHHHHHHHHHHhhhhccch-hhhhhhH--HHH
Confidence 43322 12 2244444333 13445554442 21 12233344567899999999 5655433 566
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH----HHHHHHh
Q 009004 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD----KCISALF 369 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~----~~~~~l~ 369 (547)
.|+.|++|||++| .++...-....+|. |+.|.+.+|.++. +..+.. +.+|+.|+++++- +.+ .-+..+
T Consensus 207 ~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~--LksL~~LDlsyNl-l~~hseL~pLwsL- 278 (1096)
T KOG1859|consen 207 RLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIEN--LKSLYGLDLSYNL-LSEHSELEPLWSL- 278 (1096)
T ss_pred hcccccccccccc-hhccccccchhhhh-heeeeecccHHHh--hhhHHh--hhhhhccchhHhh-hhcchhhhHHHHH-
Confidence 8999999999988 55543222222444 9999999987653 333444 7789999998742 321 222333
Q ss_pred ccCCCCCccEEecCCCC
Q 009004 370 DGTSKLQLQELDLSNLP 386 (547)
Q Consensus 370 ~~~~~~~L~~L~l~~~~ 386 (547)
..|+.|.+.|++
T Consensus 279 -----s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 279 -----SSLIVLWLEGNP 290 (1096)
T ss_pred -----HHHHHHhhcCCc
Confidence 578899999843
No 50
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.47 E-value=9.5e-07 Score=72.11 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=78.0
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccE
Q 009004 272 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 351 (547)
Q Consensus 272 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 351 (547)
+++.|.++. ++++..+ ..++.+.+|+.|+++++ .+.+. ...++++|+|++|+++.|.+... ...++. +|.|+.
T Consensus 34 ~ITrLtLSH-NKl~~vp-pnia~l~nlevln~~nn-qie~l-p~~issl~klr~lnvgmnrl~~l-prgfgs--~p~lev 106 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVVP-PNIAELKNLEVLNLSNN-QIEEL-PTSISSLPKLRILNVGMNRLNIL-PRGFGS--FPALEV 106 (264)
T ss_pred hhhhhhccc-CceeecC-CcHHHhhhhhhhhcccc-hhhhc-ChhhhhchhhhheecchhhhhcC-ccccCC--Cchhhh
Confidence 445555555 3333221 12445667777777766 45443 23456777777777776643211 112223 677777
Q ss_pred EEeCCCCCCcHHHHH-HHhccCCCCCccEEecCCCCCCC--HHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcccc
Q 009004 352 LSLRGCKRLTDKCIS-ALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 428 (547)
Q Consensus 352 L~l~~~~~~~~~~~~-~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 428 (547)
|+++++ ++....+. .++ .+..|+.|.+++ +.+. +..+. .+++|+.|.++.|..++-. .++.
T Consensus 107 ldltyn-nl~e~~lpgnff---~m~tlralyl~d-ndfe~lp~dvg----~lt~lqil~lrdndll~lp--keig----- 170 (264)
T KOG0617|consen 107 LDLTYN-NLNENSLPGNFF---YMTTLRALYLGD-NDFEILPPDVG----KLTNLQILSLRDNDLLSLP--KEIG----- 170 (264)
T ss_pred hhcccc-ccccccCCcchh---HHHHHHHHHhcC-CCcccCChhhh----hhcceeEEeeccCchhhCc--HHHH-----
Confidence 777764 34432221 111 014566677776 3332 22333 4677888888777433211 1111
Q ss_pred CccccCCCccEEecCCCC
Q 009004 429 DDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 429 ~~~~~~~~L~~L~l~~~~ 446 (547)
.+..|++|+|.+|+
T Consensus 171 ----~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 171 ----DLTRLRELHIQGNR 184 (264)
T ss_pred ----HHHHHHHHhcccce
Confidence 44558888888886
No 51
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.34 E-value=0.00021 Score=71.49 Aligned_cols=321 Identities=22% Similarity=0.272 Sum_probs=186.6
Q ss_pred CCCCCCccEEEeeccCCChhHHHHHHhcCC----CccEEecCCCCCCCCccccccchhhhh----hhccCCCcceEEccc
Q 009004 123 PSILPGIQKLCLSVDYITDAMVGTISQGLV----SLTHLDLRDAPLIEPRITFDLTNSGLQ----QINQHGKLKHLSLIR 194 (547)
Q Consensus 123 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~l~----~l~~~~~L~~L~l~~ 194 (547)
+...+.|..|+++.+.+.+.....+...++ .++.|++..| .++..+.. .+...+.++.+++..
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c---------~l~~~g~~~l~~~L~~~~~l~~l~l~~ 181 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC---------SLTSEGAAPLAAVLEKNEHLTELDLSL 181 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc---------cccccchHHHHHHHhcccchhHHHHHh
Confidence 556889999999999999998888877554 4677778776 34443433 334677788888753
Q ss_pred ccccccccccccChHHHHHHH---H----cCCCCcEEEEcCCCCCCHHHHHHH---HHcCCC-CcEEEecCCCCCCHHHH
Q 009004 195 SQEFLITYFRRVNDLGILLMA---D----KCASMESICLGGFCRVTDTGFKTI---LHSCSN-LYKLRVSHGTQLTDLVF 263 (547)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~---~----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~-L~~L~l~~~~~~~~~~~ 263 (547)
+ .+...+...+. . ...++++|++.+| .++......+ +...+. +..|++.. ..+.+.++
T Consensus 182 n---------~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~ 250 (478)
T KOG4308|consen 182 N---------GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGV 250 (478)
T ss_pred c---------ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHH
Confidence 1 22122222221 1 3457999999997 6665544443 334444 67788886 45666666
Q ss_pred HHHHhcC----CCccEEEccCCCCCCHHHHHH----hhcCCCCCEEeCCCCCCCChHHHHhh----hCCCCccEEEecCc
Q 009004 264 HDISATS----LSLTHVCLRWCNLLTNHAIKS----LASNTGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGS 331 (547)
Q Consensus 264 ~~~~~~~----~~L~~L~l~~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~L~l~~~ 331 (547)
..+.... +.++++++..| .+++.+... +..++.++.+.++.+ .+.+.....+ .....+.++.+.++
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccchhhhcccc
Confidence 5554432 56799999995 555555443 347889999999988 6666655433 34566666666654
Q ss_pred -cCChHhHHHHHH-hcCCCccEEEeCCCCCCcHHHHHHHhcc--CCCCCccEEecCCCCCCCHHHH---HHHHhcCCCCc
Q 009004 332 -DISDVGVSYLRL-TVITSLVKLSLRGCKRLTDKCISALFDG--TSKLQLQELDLSNLPHLSDNGI---LTLATCRVPIS 404 (547)
Q Consensus 332 -~l~~~~l~~l~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~L~ 404 (547)
..+......+.. .....+..+...+.....++....+... .+.+.+..+++..+ .+...+. .......+.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~l~ 407 (478)
T KOG4308|consen 329 GKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQ-VIEGRGALRLAAQLASNEKLE 407 (478)
T ss_pred CccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhcc-ccccHHHHHhhhhhhhcchhh
Confidence 333222222211 0122222232223234555554444333 22244666666664 2322222 23334568899
Q ss_pred EEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhC--CCCCCCcEEEeeCCC
Q 009004 405 ELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 473 (547)
Q Consensus 405 ~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 473 (547)
.+.++.+ ...+.+...+...... .. .++.+.++.++ ++..+...... ..-+....+...+|+
T Consensus 408 ~~~l~~n-~~~~~~~~~l~~~~~~----~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (478)
T KOG4308|consen 408 ILDLSLN-SLHDEGAEVLTEQLSR----NG-SLKALRLSRNP-ITALGTEELQRALALNPGILAIRLRGNV 471 (478)
T ss_pred hhhhhcC-ccchhhHHHHHHhhhh----cc-cchhhhhccCh-hhhcchHHHHHHHhcCCCcceeecccCc
Confidence 9999988 4555555544443331 45 89999999987 76654444333 124555555555553
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.13 E-value=8e-06 Score=66.82 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=36.1
Q ss_pred CCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcc
Q 009004 123 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 193 (547)
Q Consensus 123 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 193 (547)
++.+|-|+.|++..+.+.+..+..-+-++..|+-|++++|.. .+ .-..++++++|+.|.+.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-------e~---lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-------EI---LPPDVGKLTNLQILSLR 158 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-------cc---CChhhhhhcceeEEeec
Confidence 555777777777776666665544333556677777777521 11 11234566777777663
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.05 E-value=0.00098 Score=64.28 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=25.4
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcC-CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 009004 218 CASMESICLGGFCRVTDTGFKTILHSC-SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 283 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (547)
|++++.|++++| .+.... .+ .+|+.|.+++|..++...- . ..++|++|.+++|..
T Consensus 51 ~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-~---LP~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG-S---IPEGLEKLTVCHCPE 106 (426)
T ss_pred hcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc-h---hhhhhhheEccCccc
Confidence 466666666665 333221 12 2466666665554432210 0 123555555555533
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00033 Score=62.38 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=63.1
Q ss_pred CCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHH-HHHHhccCC
Q 009004 295 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC-ISALFDGTS 373 (547)
Q Consensus 295 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~ 373 (547)
+.+.++|+.++| .+++..+ ...+|.|+.|.|+-|+|+. +..+.. |++|++|+|..+ .|.+.. +..+ ..
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~r--CtrLkElYLRkN-~I~sldEL~YL---kn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQR--CTRLKELYLRKN-CIESLDELEYL---KN 86 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeecccccc--chhHHH--HHHHHHHHHHhc-ccccHHHHHHH---hc
Confidence 345677777777 6666433 3477888888888877754 333444 777777777763 344322 2222 22
Q ss_pred CCCccEEecCCCCCCC---HHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 009004 374 KLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIA 421 (547)
Q Consensus 374 ~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 421 (547)
+|+|+.|.|..++-.. ..--....+.+|+|++|+ |..+|...++.
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ 134 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEE 134 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHH
Confidence 3777777776543222 111223344577777774 22455554443
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.74 E-value=0.0021 Score=35.36 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=11.0
Q ss_pred CCCcEEeccCCCCCCHHHHHHHH
Q 009004 401 VPISELRVRQCPLIGDTSVIALA 423 (547)
Q Consensus 401 ~~L~~L~l~~~~~l~~~~~~~l~ 423 (547)
++|+.|+|++|+.++|.++..++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 44444455444444444444443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.61 E-value=0.0035 Score=39.66 Aligned_cols=38 Identities=34% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCCh
Q 009004 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISD 335 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~ 335 (547)
++|++|+++++ .+++... .++.+++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 45667777666 5554322 26667777777777766653
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.00074 Score=59.86 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=68.5
Q ss_pred CCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHHh
Q 009004 346 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT-SVIALAS 424 (547)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~ 424 (547)
+..|+.|.+.++... .++....+|+|+.|.++..+.-...++..++..+|+|++|++++| .+.+. .+..+.
T Consensus 42 ~~~le~ls~~n~glt------t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~- 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLT------TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK- 113 (260)
T ss_pred ccchhhhhhhcccee------ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-
Confidence 455666666554422 233333448999999998422234566666777899999999999 56643 333333
Q ss_pred ccccCccccCCCccEEecCCCCCCCH---HHHHHhhCCCCCCCcEEEeeCCC
Q 009004 425 MLVDDDRWYGSSIRLLDLYNCGGITQ---LAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 425 ~~~~~~~~~~~~L~~L~l~~~~~i~~---~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+.+|..|++.+|+ ++. .--..|. .+|+|+.|+-..+.
T Consensus 114 --------~l~nL~~Ldl~n~~-~~~l~dyre~vf~--ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 114 --------ELENLKSLDLFNCS-VTNLDDYREKVFL--LLPSLKYLDGCDVD 154 (260)
T ss_pred --------hhcchhhhhcccCC-ccccccHHHHHHH--HhhhhccccccccC
Confidence 66789999999997 432 2222222 26788887665553
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.57 E-value=0.004 Score=65.44 Aligned_cols=106 Identities=24% Similarity=0.182 Sum_probs=67.8
Q ss_pred CCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc---HHHHHHHhccCCC
Q 009004 298 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSK 374 (547)
Q Consensus 298 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~ 374 (547)
++.|+|+++ .+.......+..+++|+.|+|++|.+.......+.. +++|+.|+++++. ++ +..+..+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~-lsg~iP~~l~~L------ 489 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNS-FNGSIPESLGQL------ 489 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCC-CCCCCchHHhcC------
Confidence 677888877 555544556778888888888888776544334444 8888888888864 43 2333333
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCC
Q 009004 375 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLI 414 (547)
Q Consensus 375 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l 414 (547)
++|+.|+++++ .++...-..+.....++..+++.+|+.+
T Consensus 490 ~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 490 TSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCEEECcCC-cccccCChHHhhccccCceEEecCCccc
Confidence 78889998884 5543222222222346677888877543
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.51 E-value=0.0033 Score=34.52 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHhhC
Q 009004 434 GSSIRLLDLYNCGGITQLAFRWLKK 458 (547)
Q Consensus 434 ~~~L~~L~l~~~~~i~~~~~~~l~~ 458 (547)
|++|+.|+|++|++|++.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999999999999988753
No 60
>PLN03150 hypothetical protein; Provisional
Probab=96.47 E-value=0.0054 Score=64.46 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=72.5
Q ss_pred CccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc---HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 009004 322 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 398 (547)
Q Consensus 322 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 398 (547)
.++.|+|+++.+.......+.. +++|+.|+|+++. ++ +..+..+ ++|+.|++++ +.++......+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~-l~g~iP~~~~~l------~~L~~LdLs~-N~lsg~iP~~l~- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNS-IRGNIPPSLGSI------TSLEVLDLSY-NSFNGSIPESLG- 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC--CCCCCEEECCCCc-ccCcCChHHhCC------CCCCEEECCC-CCCCCCCchHHh-
Confidence 4788999998776544455555 8999999999864 43 2223322 8999999999 466532222222
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCC
Q 009004 399 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 449 (547)
Q Consensus 399 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 449 (547)
.+++|+.|++++| .++......+.. ...++..+++.+|+.+.
T Consensus 488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~--------~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 488 QLTSLRILNLNGN-SLSGRVPAALGG--------RLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCCCCEEECcCC-cccccCChHHhh--------ccccCceEEecCCcccc
Confidence 6899999999998 455443333433 33567788898887544
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.40 E-value=0.0072 Score=58.46 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=83.5
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc-cCChHhHHHHHHhcCC
Q 009004 269 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVIT 347 (547)
Q Consensus 269 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~ 347 (547)
.++++++|++++| .+...+ . -.++|+.|.+++|..++... ..+ .++|++|.+++| .+.. ..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s---------LP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP--V--LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG---------LPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC--C--CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc---------ccc
Confidence 4689999999997 454433 1 23579999999886653321 111 368999999988 5431 235
Q ss_pred CccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccc
Q 009004 348 SLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 427 (547)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 427 (547)
.|+.|++.... .. .+..+. ++|+.|.+.+.+......... .-.++|+.|.+++|..+. +...
T Consensus 113 sLe~L~L~~n~-~~--~L~~LP-----ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~-- 174 (426)
T PRK15386 113 SVRSLEIKGSA-TD--SIKNVP-----NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEK-- 174 (426)
T ss_pred ccceEEeCCCC-Cc--ccccCc-----chHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccc--
Confidence 68888886432 22 123332 688999886533221111110 013689999999996431 1110
Q ss_pred cCccccCCCccEEecCCCC
Q 009004 428 DDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 428 ~~~~~~~~~L~~L~l~~~~ 446 (547)
-..+|+.|.++.+.
T Consensus 175 -----LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 -----LPESLQSITLHIEQ 188 (426)
T ss_pred -----ccccCcEEEecccc
Confidence 22579999998763
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.27 E-value=0.0035 Score=62.42 Aligned_cols=145 Identities=28% Similarity=0.291 Sum_probs=70.0
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccE
Q 009004 272 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 351 (547)
Q Consensus 272 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 351 (547)
+|+.|++++ +.+.... ..+..+++|+.|++++| .+.+.... ....++|+.|+++++.+.+..... . ....|+.
T Consensus 141 nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~--~-~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEI--E-LLSALEE 213 (394)
T ss_pred hcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhhh-hhhhhhhhheeccCCccccCchhh--h-hhhhhhh
Confidence 556666655 3333321 23345666777776666 44332211 115666666777666554433221 1 1234666
Q ss_pred EEeCCCCCCc-HHHHHHHhccCCCCCccEEecCCCCCCCH--HHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcccc
Q 009004 352 LSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSD--NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 428 (547)
Q Consensus 352 L~l~~~~~~~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 428 (547)
|.+++...+. ...+..+ .++..+.+.+ +.+.+ ..+. .+++++.|++++| .+++... +.
T Consensus 214 l~~~~N~~~~~~~~~~~~------~~l~~l~l~~-n~~~~~~~~~~----~l~~l~~L~~s~n-~i~~i~~--~~----- 274 (394)
T COG4886 214 LDLSNNSIIELLSSLSNL------KNLSGLELSN-NKLEDLPESIG----NLSNLETLDLSNN-QISSISS--LG----- 274 (394)
T ss_pred hhhcCCcceecchhhhhc------ccccccccCC-ceeeeccchhc----cccccceeccccc-ccccccc--cc-----
Confidence 6666542122 1222222 4455555444 33332 2222 4556777777666 4444433 22
Q ss_pred CccccCCCccEEecCCCC
Q 009004 429 DDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 429 ~~~~~~~~L~~L~l~~~~ 446 (547)
...+++.|+++++.
T Consensus 275 ----~~~~l~~L~~s~n~ 288 (394)
T COG4886 275 ----SLTNLRELDLSGNS 288 (394)
T ss_pred ----ccCccCEEeccCcc
Confidence 45667777776665
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.23 E-value=0.001 Score=58.92 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC
Q 009004 346 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
+|+|+.|.++.+..-...++..++..+ |+|+++++++ +.+.+..-..-.+.+++|..|++.+|+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhC--CceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence 667777777764333345555555555 7777777777 566532111122245667777777774
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.94 E-value=0.0087 Score=59.61 Aligned_cols=171 Identities=27% Similarity=0.285 Sum_probs=109.4
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcC-CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCc
Q 009004 271 LSLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 349 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L 349 (547)
+.++.|.+.+ +.+..... ..... ++|+.|+++++ .+.... ..+..+++|+.|++++|.+.+...... . .+.|
T Consensus 116 ~~l~~L~l~~-n~i~~i~~-~~~~~~~nL~~L~l~~N-~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~-~--~~~L 188 (394)
T COG4886 116 TNLTSLDLDN-NNITDIPP-LIGLLKSNLKELDLSDN-KIESLP-SPLRNLPNLKNLDLSFNDLSDLPKLLS-N--LSNL 188 (394)
T ss_pred cceeEEecCC-cccccCcc-ccccchhhccccccccc-chhhhh-hhhhccccccccccCCchhhhhhhhhh-h--hhhh
Confidence 4677777776 33333221 11233 38999999988 555431 456789999999999998876554321 2 6789
Q ss_pred cEEEeCCCCCCcHHHHH-HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcccc
Q 009004 350 VKLSLRGCKRLTDKCIS-ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 428 (547)
Q Consensus 350 ~~L~l~~~~~~~~~~~~-~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 428 (547)
+.|+++++. +++.... ... ..|++|.+++...+..... ...+.++..+.+.++ .+.+. ...+.
T Consensus 189 ~~L~ls~N~-i~~l~~~~~~~-----~~L~~l~~~~N~~~~~~~~---~~~~~~l~~l~l~~n-~~~~~-~~~~~----- 252 (394)
T COG4886 189 NNLDLSGNK-ISDLPPEIELL-----SALEELDLSNNSIIELLSS---LSNLKNLSGLELSNN-KLEDL-PESIG----- 252 (394)
T ss_pred hheeccCCc-cccCchhhhhh-----hhhhhhhhcCCcceecchh---hhhcccccccccCCc-eeeec-cchhc-----
Confidence 999999854 5433222 121 5699999998423332221 115677888887777 34331 11111
Q ss_pred CccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 009004 429 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 429 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++++.|++++|. ++.... +. ...+|+.|++.++.
T Consensus 253 ----~l~~l~~L~~s~n~-i~~i~~--~~--~~~~l~~L~~s~n~ 288 (394)
T COG4886 253 ----NLSNLETLDLSNNQ-ISSISS--LG--SLTNLRELDLSGNS 288 (394)
T ss_pred ----cccccceecccccc-cccccc--cc--ccCccCEEeccCcc
Confidence 67789999999997 666433 33 37899999999874
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.76 E-value=0.0075 Score=51.42 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=4.4
Q ss_pred CCCCcEEecc
Q 009004 400 RVPISELRVR 409 (547)
Q Consensus 400 ~~~L~~L~l~ 409 (547)
+|+|+.|+..
T Consensus 139 lp~l~~LDF~ 148 (233)
T KOG1644|consen 139 LPSLRTLDFQ 148 (233)
T ss_pred cCcceEeehh
Confidence 3444444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.0032 Score=56.32 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=76.3
Q ss_pred CCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH-HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 009004 320 LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 398 (547)
Q Consensus 320 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 398 (547)
+.+.++|+..+|.+++..+. . .+|.|+.|.|+-+. |+. ..+.. | .+|++|.|.. +.|.+..-..-.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic--~--kMp~lEVLsLSvNk-IssL~pl~r----C--trLkElYLRk-N~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC--E--KMPLLEVLSLSVNK-ISSLAPLQR----C--TRLKELYLRK-NCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHHHH--H--hcccceeEEeeccc-cccchhHHH----H--HHHHHHHHHh-cccccHHHHHHHh
Confidence 56778888888888876553 2 37788888887643 432 22222 3 7888888888 6777655555556
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHH
Q 009004 399 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 455 (547)
Q Consensus 399 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 455 (547)
++|+|+.|.|..||.....+-.+-...+. .+|+|++|| |.-++...+..
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR-----~LPnLkKLD---nv~VteeEle~ 134 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLR-----VLPNLKKLD---NVPVTEEELEE 134 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHH-----Hcccchhcc---CccccHHHHHH
Confidence 78888888888887665555544444333 678888876 33366655443
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.69 E-value=0.0057 Score=52.10 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=18.5
Q ss_pred cCCCccEEecCCCCCCCHH-HHHHhhCCCCCCCcEEEeeCCC
Q 009004 433 YGSSIRLLDLYNCGGITQL-AFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 433 ~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.||+|+.|.+-+|+ ++.. ......-..+|+|+.|++.+..
T Consensus 111 ~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 45555555555555 3321 1111111235666666665553
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.47 E-value=0.014 Score=36.91 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=6.7
Q ss_pred cCCCccEEecCCCC
Q 009004 433 YGSSIRLLDLYNCG 446 (547)
Q Consensus 433 ~~~~L~~L~l~~~~ 446 (547)
.+++|+.|++++|+
T Consensus 22 ~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 22 NLPNLETLNLSNNP 35 (44)
T ss_dssp TCTTSSEEEETSSC
T ss_pred CCCCCCEEEecCCC
Confidence 44444444444443
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.17 E-value=0.0027 Score=63.48 Aligned_cols=78 Identities=35% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCccEEEccCCCCCCHHHHHH-hhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCC
Q 009004 270 SLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 348 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~ 348 (547)
..+|+.|++.+ +.+.. +.. +..+++|++|+++++ .+++ +..+..++.|+.|++.+|.+....- +. .++.
T Consensus 94 ~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~~--~~--~l~~ 163 (414)
T KOG0531|consen 94 LKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDISG--LE--SLKS 163 (414)
T ss_pred ccceeeeeccc-cchhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhccC--Cc--cchh
Confidence 34666666666 33321 222 345666666666665 4443 3334455556666666665543221 11 1445
Q ss_pred ccEEEeCCC
Q 009004 349 LVKLSLRGC 357 (547)
Q Consensus 349 L~~L~l~~~ 357 (547)
|+.+++.++
T Consensus 164 L~~l~l~~n 172 (414)
T KOG0531|consen 164 LKLLDLSYN 172 (414)
T ss_pred hhcccCCcc
Confidence 566666554
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.87 E-value=0.0033 Score=62.83 Aligned_cols=215 Identities=25% Similarity=0.239 Sum_probs=105.7
Q ss_pred HcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCH-HHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhc
Q 009004 216 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTD-LVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS 294 (547)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 294 (547)
..+.+|+.|++.+. .+.. +......+++|+.|+++++ .++. .++. .++.|+.|++.+ +.+.. +..+..
T Consensus 92 ~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~-N~i~~--~~~~~~ 160 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSG-NLISD--ISGLES 160 (414)
T ss_pred ccccceeeeecccc-chhh--cccchhhhhcchheecccc-ccccccchh----hccchhhheecc-Ccchh--ccCCcc
Confidence 34677888888773 3332 2222445778888888774 3332 2222 234477777777 34332 223334
Q ss_pred CCCCCEEeCCCCCCCChHHH-HhhhCCCCccEEEecCccCChHh-HHHHHHhcCCCccEEEeCCCCCCc-HHHHHHHhcc
Q 009004 295 NTGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDISDVG-VSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDG 371 (547)
Q Consensus 295 ~~~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~-l~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~ 371 (547)
+++|+.++++++ .+..... . +..+.+++.+.+.+|.+.... +.... .+..+.+.... ++ ..++...
T Consensus 161 l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~-----~l~~~~l~~n~-i~~~~~l~~~--- 229 (414)
T KOG0531|consen 161 LKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLK-----KLVLLSLLDNK-ISKLEGLNEL--- 229 (414)
T ss_pred chhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHHHH-----HHHHhhccccc-ceeccCcccc---
Confidence 677777777776 3433322 1 456777777777777554322 22111 12222222211 11 1111111
Q ss_pred CCCC--CccEEecCCCCCCCHH--HHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHHhccccCccccCCCccEEecCCCC
Q 009004 372 TSKL--QLQELDLSNLPHLSDN--GILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 372 ~~~~--~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
. +|+.+++++ +.+... ++. .++.+..|++..+. +... ++. ..+.+..+....+.
T Consensus 230 ---~~~~L~~l~l~~-n~i~~~~~~~~----~~~~l~~l~~~~n~-~~~~~~~~------------~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 230 ---VMLHLRELYLSG-NRISRSPEGLE----NLKNLPVLDLSSNR-ISNLEGLE------------RLPKLSELWLNDNK 288 (414)
T ss_pred ---hhHHHHHHhccc-Ccccccccccc----ccccccccchhhcc-cccccccc------------ccchHHHhccCcch
Confidence 2 277788887 455432 233 46677777777663 3222 111 33445555555554
Q ss_pred CCCH-HHHHHhhCCCCCCCcEEEeeCCC
Q 009004 447 GITQ-LAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 447 ~i~~-~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.... .....-.....++++.+.+.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred hcchhhhhccccccccccccccccccCc
Confidence 1111 11111101235677777777775
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.73 E-value=0.012 Score=46.83 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=17.3
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 009004 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
..+.++.|++.++ .+.+...+ ++.+|.|+.|++..|.+
T Consensus 75 kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 75 KFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred ccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCcc
Confidence 3344444555444 34443333 44455555555554443
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.71 E-value=0.065 Score=28.60 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=10.5
Q ss_pred CCccEEEecCccCChHhHHHH
Q 009004 321 PQLKILLLDGSDISDVGVSYL 341 (547)
Q Consensus 321 ~~L~~L~l~~~~l~~~~l~~l 341 (547)
++|++|+|++|.+++.++.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555555544
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.19 E-value=0.073 Score=28.41 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=5.5
Q ss_pred ccEEecCCCCCCCHHHH
Q 009004 437 IRLLDLYNCGGITQLAF 453 (547)
Q Consensus 437 L~~L~l~~~~~i~~~~~ 453 (547)
|+.|+|++|. |++.++
T Consensus 4 L~~L~l~~n~-i~~~g~ 19 (24)
T PF13516_consen 4 LETLDLSNNQ-ITDEGA 19 (24)
T ss_dssp -SEEE-TSSB-EHHHHH
T ss_pred CCEEEccCCc-CCHHHH
Confidence 3444444433 333333
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.66 E-value=0.031 Score=44.64 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=33.5
Q ss_pred hhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 009004 292 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 292 l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
+.....|+..+++++ .+.+-....-..+|.++.|++.+|.+.+.... ++. +|.|+.|+++.+
T Consensus 49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa--m~aLr~lNl~~N 110 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAA--MPALRSLNLRFN 110 (177)
T ss_pred HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhh--hHHhhhcccccC
Confidence 344555666666665 34333222223555666666666666554444 444 566666666654
No 75
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.42 E-value=1.1 Score=44.72 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=48.0
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCC-CC-HHHHHHhhCCCCCCCcEEEeeCCC-
Q 009004 397 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG-IT-QLAFRWLKKPYFPRLRWLGVTGSV- 473 (547)
Q Consensus 397 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-i~-~~~~~~l~~~~~~~L~~L~l~~~~- 473 (547)
....|.+..+++++|....-.++..++. ..|+|+.|+|++|.. +. ...+..+ ..+.|++|-+.||+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~~~~el~K~---k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKISSESELDKL---KGLPLEELVLEGNPL 282 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhcchhhhhhh---cCCCHHHeeecCCcc
Confidence 3345666666666664333334445555 556677777776621 21 1122222 24566777777765
Q ss_pred ------CHHHHHHHHhhCCCcEeecc
Q 009004 474 ------NRDILDALARSRPFLNVACR 493 (547)
Q Consensus 474 ------~~~~~~~~~~~~~~l~~~~~ 493 (547)
..+-+.++.+.+|++.....
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeecC
Confidence 24556677778888876543
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.74 E-value=0.79 Score=25.51 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.1
Q ss_pred CCccEEEecCccCChHhHHHHHH
Q 009004 321 PQLKILLLDGSDISDVGVSYLRL 343 (547)
Q Consensus 321 ~~L~~L~l~~~~l~~~~l~~l~~ 343 (547)
++|++|+|++|.+++.+...++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777766654
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=87.38 E-value=0.094 Score=52.15 Aligned_cols=124 Identities=26% Similarity=0.233 Sum_probs=55.6
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccE
Q 009004 272 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 351 (547)
Q Consensus 272 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 351 (547)
.|+.|+++. +.+...+. .++. --|+.|.++++ +++.. ...++..+.|..|+.+.|.+.... ..+.. +.+|+.
T Consensus 122 ~lt~l~ls~-NqlS~lp~-~lC~-lpLkvli~sNN-kl~~l-p~~ig~~~tl~~ld~s~nei~slp-sql~~--l~slr~ 193 (722)
T KOG0532|consen 122 ALTFLDLSS-NQLSHLPD-GLCD-LPLKVLIVSNN-KLTSL-PEEIGLLPTLAHLDVSKNEIQSLP-SQLGY--LTSLRD 193 (722)
T ss_pred HHHHhhhcc-chhhcCCh-hhhc-CcceeEEEecC-ccccC-CcccccchhHHHhhhhhhhhhhch-HHhhh--HHHHHH
Confidence 455566655 33322221 1222 23666666655 34332 223345566666666666543211 12222 445555
Q ss_pred EEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC
Q 009004 352 LSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 352 L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
|.+..++-.. -...+. + -.|..||++. +.+....+. +..+..|++|-|.+||
T Consensus 194 l~vrRn~l~~--lp~El~--~--LpLi~lDfSc-Nkis~iPv~--fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 194 LNVRRNHLED--LPEELC--S--LPLIRLDFSC-NKISYLPVD--FRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHhhhhhhh--CCHHHh--C--Cceeeeeccc-Cceeecchh--hhhhhhheeeeeccCC
Confidence 5555432111 001111 0 2466666664 555422221 1145666666666665
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.51 E-value=0.17 Score=40.98 Aligned_cols=10 Identities=10% Similarity=0.198 Sum_probs=3.2
Q ss_pred CCCCccEEEe
Q 009004 319 SLPQLKILLL 328 (547)
Q Consensus 319 ~~~~L~~L~l 328 (547)
.+++|+.+.+
T Consensus 56 ~~~~l~~i~~ 65 (129)
T PF13306_consen 56 NCKSLESITF 65 (129)
T ss_dssp T-TT-EEEEE
T ss_pred cccccccccc
Confidence 3333444444
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.37 E-value=0.88 Score=25.31 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=17.6
Q ss_pred CCccEEEeeccCCChhHHHHHHhcC
Q 009004 127 PGIQKLCLSVDYITDAMVGTISQGL 151 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~ 151 (547)
++|++|+|+.|.+.++....+.+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4677788887777777777666543
No 80
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.04 E-value=0.15 Score=50.76 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=90.1
Q ss_pred HhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc-HHHHHHHh
Q 009004 291 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALF 369 (547)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~l~ 369 (547)
.++.+..|..|+|+.+ .+..... .+.. --|+.|-+++|+++..... +. ..++|..|+.+.|.-.+ ...+..+
T Consensus 116 ~i~~L~~lt~l~ls~N-qlS~lp~-~lC~-lpLkvli~sNNkl~~lp~~-ig--~~~tl~~ld~s~nei~slpsql~~l- 188 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSN-QLSHLPD-GLCD-LPLKVLIVSNNKLTSLPEE-IG--LLPTLAHLDVSKNEIQSLPSQLGYL- 188 (722)
T ss_pred hhhhhhHHHHhhhccc-hhhcCCh-hhhc-CcceeEEEecCccccCCcc-cc--cchhHHHhhhhhhhhhhchHHhhhH-
Confidence 3446777888888776 3333222 2222 3488888888877643322 11 25678888888765333 2223333
Q ss_pred ccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCC
Q 009004 370 DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 449 (547)
Q Consensus 370 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 449 (547)
.+|+.|.+.. +++.+..-+ +. +-.|.+|+++.| +++...+.. . .++.|++|.|.+|+ +.
T Consensus 189 -----~slr~l~vrR-n~l~~lp~E-l~--~LpLi~lDfScN-kis~iPv~f-r---------~m~~Lq~l~LenNP-Lq 247 (722)
T KOG0532|consen 189 -----TSLRDLNVRR-NHLEDLPEE-LC--SLPLIRLDFSCN-KISYLPVDF-R---------KMRHLQVLQLENNP-LQ 247 (722)
T ss_pred -----HHHHHHHHhh-hhhhhCCHH-Hh--CCceeeeecccC-ceeecchhh-h---------hhhhheeeeeccCC-CC
Confidence 6778888777 454322221 22 345889999887 565544332 1 66789999999998 54
Q ss_pred HHHHHHhhCCCCCCCcEEEeeCC
Q 009004 450 QLAFRWLKKPYFPRLRWLGVTGS 472 (547)
Q Consensus 450 ~~~~~~l~~~~~~~L~~L~l~~~ 472 (547)
.-..+........-.++|++.-|
T Consensus 248 SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 248 SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CChHHHHhccceeeeeeecchhc
Confidence 43333332223445677777766
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=81.85 E-value=1.2 Score=21.44 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=4.5
Q ss_pred CccEEEecCccC
Q 009004 322 QLKILLLDGSDI 333 (547)
Q Consensus 322 ~L~~L~l~~~~l 333 (547)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 445555555443
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.81 E-value=0.28 Score=39.66 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=20.7
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecC
Q 009004 271 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 330 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~ 330 (547)
++|+.+.+.+ .+...+-..+..+++|+.+.+.. .+...+...+..+++|+.+.+..
T Consensus 35 ~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 35 TSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT
T ss_pred cccccccccc--cccccceeeeecccccccccccc--cccccccccccccccccccccCc
Confidence 3444444443 12222223344444555555543 22222233344455555555543
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.27 E-value=2.5 Score=42.40 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=32.0
Q ss_pred cCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCC-CCC-HHHHHHHHhcCCCCcEEeccCCCC
Q 009004 345 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLS-DNGILTLATCRVPISELRVRQCPL 413 (547)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~-~l~-~~~~~~l~~~~~~L~~L~l~~~~~ 413 (547)
..|.+..+.++++.-..-+.+..+++.. |+|+.|+|++.. .+. ...+..+ ....|++|-+.|||.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~a--pklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIA--PKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhc--chhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc
Confidence 4666666666664433334444444433 666666666631 121 1122211 234566666666653
No 84
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=69.80 E-value=9.9 Score=35.71 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=55.2
Q ss_pred hHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCC---HHHHHHHHhcCCCCcEEeccCCC
Q 009004 337 GVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 337 ~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
.+..+.. .-+.++..+|....+++...+..+..+ +.....+.+.+.+ ...+ ...+..+.+.++.|++|++.+|
T Consensus 189 ~leri~~-nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesn- 265 (353)
T KOG3735|consen 189 SLERIKE-NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESN- 265 (353)
T ss_pred HHHHHhc-CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecccc-
Confidence 3343433 567777777777777776666655543 3335666666665 3333 3344455566788888888888
Q ss_pred CCCHHHHHHHHhccc
Q 009004 413 LIGDTSVIALASMLV 427 (547)
Q Consensus 413 ~l~~~~~~~l~~~~~ 427 (547)
.||..++.++..++.
T Consensus 266 FItg~gi~a~~~al~ 280 (353)
T KOG3735|consen 266 FITGLGIMALLRALQ 280 (353)
T ss_pred ccccHHHHHHHHHHh
Confidence 788888777766443
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=60.73 E-value=5.5 Score=20.52 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=8.2
Q ss_pred CccEEEecCccCC
Q 009004 322 QLKILLLDGSDIS 334 (547)
Q Consensus 322 ~L~~L~l~~~~l~ 334 (547)
+|++|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4666777776554
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=53.74 E-value=11 Score=20.17 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=7.5
Q ss_pred CCccEEEecCccCC
Q 009004 321 PQLKILLLDGSDIS 334 (547)
Q Consensus 321 ~~L~~L~l~~~~l~ 334 (547)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555444
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=53.74 E-value=11 Score=20.17 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=7.5
Q ss_pred CCccEEEecCccCC
Q 009004 321 PQLKILLLDGSDIS 334 (547)
Q Consensus 321 ~~L~~L~l~~~~l~ 334 (547)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555444
No 88
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=52.65 E-value=9.5 Score=28.36 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=5.8
Q ss_pred hhHHHHHHHhh
Q 009004 515 EVDELEQWLME 525 (547)
Q Consensus 515 ~~~~l~~~~~~ 525 (547)
.++-...|+++
T Consensus 67 pIDVYSdWiDa 77 (109)
T KOG3214|consen 67 PIDVYSDWIDA 77 (109)
T ss_pred chHHHHHHHHH
Confidence 34455666643
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.06 E-value=25 Score=34.90 Aligned_cols=308 Identities=17% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCccEEEeeccCCChhHHHHHHh-cCCCccEEecCCCCCCCCccccccchhhhhhhc---cCCCcceEEccccccccccc
Q 009004 127 PGIQKLCLSVDYITDAMVGTISQ-GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN---QHGKLKHLSLIRSQEFLITY 202 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~~~~ 202 (547)
+.+++++++-+.+.++..-.+.. .++ +.++.| ..++.++..+. .-..+.+++++ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c---------~lsskfis~l~~qsg~~~lteldls-------~n 224 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVC---------ELSSKFISKLLIQSGRLWLTELDLS-------TN 224 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc----cchhhh---------hhhhhHHHHhhhhhccccccccccc-------cC
Q ss_pred ccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcC-CCCcEEEecCCCCCCHH------HHHHHHhcCCCccE
Q 009004 203 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSC-SNLYKLRVSHGTQLTDL------VFHDISATSLSLTH 275 (547)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~------~~~~~~~~~~~L~~ 275 (547)
-..-.......+...-.-++.++.++-..-.+..+..++..+ .++...+++.+..-... ..+..+..-+++ +
T Consensus 225 ~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-h 303 (553)
T KOG4242|consen 225 GGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-H 303 (553)
T ss_pred CCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-c
Q ss_pred EEccCCCCCCHHHHHHhh------cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCc
Q 009004 276 VCLRWCNLLTNHAIKSLA------SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 349 (547)
Q Consensus 276 L~l~~~~~l~~~~~~~l~------~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L 349 (547)
|++.+ ....+.....+- ..+.=-++++..|..-......+-.+--.++.|.+..|.....+-........+..
T Consensus 304 ln~~~-~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~ 382 (553)
T KOG4242|consen 304 LNSRP-RYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSG 382 (553)
T ss_pred ccccc-ccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeecccc
Q ss_pred cEEEeCCCCC-------CcHHHHHHHhccCCCCCccEEecCCC-CCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 009004 350 VKLSLRGCKR-------LTDKCISALFDGTSKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIA 421 (547)
Q Consensus 350 ~~L~l~~~~~-------~~~~~~~~l~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 421 (547)
+.+.+.+... .-...+....... --+..+.++.| ..-.......-..+-+.+..|+++++ ...+.+-.-
T Consensus 383 r~l~agrs~~kqvm~s~~~a~~v~k~~~~~--g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn-~mgd~gap~ 459 (553)
T KOG4242|consen 383 RILKAGRSGDKQVMDSSTEAPPVSKKSRTH--GVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGN-GMGDGGAPP 459 (553)
T ss_pred ccccccccCCceeccccccchhhhhhhccc--ccccCcccCCCcccccHHHHHHhhccCcccccccccCC-CcccCCCCc
Q ss_pred HHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCC-CCcE
Q 009004 422 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFP-RLRW 466 (547)
Q Consensus 422 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~-~L~~ 466 (547)
++.++. ...+++.+-.+.+. ++..++..... ..| ++++
T Consensus 460 lpkalq-----~n~rlr~ipds~n~-p~~~gl~p~~~-~~p~n~~r 498 (553)
T KOG4242|consen 460 LPKALQ-----SNCRLRPIPDSLNL-PEDPGLGPRNE-ERPLNLQR 498 (553)
T ss_pred CccccC-----CCCccCCCCCCCCC-ccccccchhhh-hccccccc
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=48.76 E-value=14 Score=20.13 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.3
Q ss_pred ccEEecCC
Q 009004 377 LQELDLSN 384 (547)
Q Consensus 377 L~~L~l~~ 384 (547)
|++|++..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 34444443
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=41.73 E-value=23 Score=19.34 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=9.1
Q ss_pred CCccEEEecCccCC
Q 009004 321 PQLKILLLDGSDIS 334 (547)
Q Consensus 321 ~~L~~L~l~~~~l~ 334 (547)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46677777776653
No 92
>PHA02608 67 prohead core protein; Provisional
Probab=40.84 E-value=20 Score=25.29 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=7.9
Q ss_pred HHHHhhCCCCCCC
Q 009004 520 EQWLMEGEDESDN 532 (547)
Q Consensus 520 ~~~~~~~~~~~~~ 532 (547)
+.++-||++++++
T Consensus 41 ~sv~iEGEe~ed~ 53 (80)
T PHA02608 41 RSVMIEGEEPEDD 53 (80)
T ss_pred HHHhhcCCCCccc
Confidence 3467777775544
No 93
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=38.70 E-value=97 Score=29.46 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCccEEEccCCCCCCHHHHHHh----hcCCCCCEEeCCCCCCCChHHHHh----hhCCCCccEEEecCcc
Q 009004 261 LVFHDISATSLSLTHVCLRWCNLLTNHAIKSL----ASNTGIKVLDLRDCKNLGDEALRA----ISSLPQLKILLLDGSD 332 (547)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~L~~L~l~~~~ 332 (547)
..+..+-..-+.++.+.+++...++...+..+ ...+..+.+.+.+. ...+....+ +..++.|++|++.+|.
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccccc
Confidence 34444555667788888877666665554433 34455566666554 233322222 2367888999999998
Q ss_pred CChHhHHHHHH
Q 009004 333 ISDVGVSYLRL 343 (547)
Q Consensus 333 l~~~~l~~l~~ 343 (547)
|+..++.++..
T Consensus 267 Itg~gi~a~~~ 277 (353)
T KOG3735|consen 267 ITGLGIMALLR 277 (353)
T ss_pred cccHHHHHHHH
Confidence 88888876655
No 94
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=29.24 E-value=42 Score=31.43 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=9.1
Q ss_pred chhhHHHHHHHhh
Q 009004 513 YDEVDELEQWLME 525 (547)
Q Consensus 513 ~~~~~~l~~~~~~ 525 (547)
....++|+.|+.+
T Consensus 380 a~t~~eL~~FLk~ 392 (470)
T COG1614 380 ATTIDELREFLKE 392 (470)
T ss_pred cccHHHHHHHHHh
Confidence 3456788888866
No 95
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=23.90 E-value=42 Score=29.96 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=5.1
Q ss_pred CCHHHHHHhhC
Q 009004 448 ITQLAFRWLKK 458 (547)
Q Consensus 448 i~~~~~~~l~~ 458 (547)
|...-...+..
T Consensus 11 IG~krakkLl~ 21 (232)
T PRK12766 11 VGPSKAEALRE 21 (232)
T ss_pred cCHHHHHHHHH
Confidence 44444444444
No 96
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=21.36 E-value=2.8e+02 Score=19.03 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=5.8
Q ss_pred CccEEecCCCCCCC
Q 009004 376 QLQELDLSNLPHLS 389 (547)
Q Consensus 376 ~L~~L~l~~~~~l~ 389 (547)
+++.+.+.+...++
T Consensus 12 ~~~~l~i~~~~~it 25 (70)
T PF07735_consen 12 NLEKLSISSSNWIT 25 (70)
T ss_pred CCCEEEEccCCccc
Confidence 34444444333333
No 97
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=20.93 E-value=48 Score=28.87 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=9.3
Q ss_pred hhHHHHHHHhhCCC
Q 009004 515 EVDELEQWLMEGED 528 (547)
Q Consensus 515 ~~~~l~~~~~~~~~ 528 (547)
....+..|+.+++.
T Consensus 227 ~~~dlekWl~~~~~ 240 (303)
T COG5129 227 KKKDLEKWLGSDQS 240 (303)
T ss_pred hHHHHHHHhccccc
Confidence 35678899865444
No 98
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=20.85 E-value=57 Score=30.47 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=11.4
Q ss_pred ccchhhHHHHHHHhhC
Q 009004 511 HDYDEVDELEQWLMEG 526 (547)
Q Consensus 511 ~~~~~~~~l~~~~~~~ 526 (547)
.-.|.++++++|..+.
T Consensus 134 lvkDa~~El~E~~~~~ 149 (275)
T PF13324_consen 134 LVKDALEELEEWDEEP 149 (275)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4457788899997643
No 99
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=20.79 E-value=69 Score=23.44 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=9.0
Q ss_pred hhHHHHHHHhhCCCCCCCh
Q 009004 515 EVDELEQWLMEGEDESDND 533 (547)
Q Consensus 515 ~~~~l~~~~~~~~~~~~~~ 533 (547)
....+-+|+.+.++|+|+|
T Consensus 65 ~~~~fi~WL~eaeeE~~ee 83 (84)
T PF02020_consen 65 QAQPFIEWLEEAEEESDEE 83 (84)
T ss_dssp HHHHHHHHHHHCC------
T ss_pred HHHHHHHHHhccCccCCCC
Confidence 3456777887777766443
No 100
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=20.19 E-value=2e+02 Score=30.69 Aligned_cols=10 Identities=50% Similarity=0.926 Sum_probs=4.6
Q ss_pred ccEEecCCCC
Q 009004 437 IRLLDLYNCG 446 (547)
Q Consensus 437 L~~L~l~~~~ 446 (547)
++.+-+-||.
T Consensus 52 ~~~vilIncG 61 (622)
T PF02724_consen 52 IKSVILINCG 61 (622)
T ss_pred hceEEEEecC
Confidence 4444444454
Done!