BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009005
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/447 (61%), Positives = 350/447 (78%)
Query: 77 ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
ELSSLTA+SP+DGRY KV L SEYGL+ FRV VE++WL KL+ + EVP+F+
Sbjct: 28 ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAA 87
Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
+A YL ++ F+ +DA +K IER TNHDVKAVEYFLK+K PE+ V EF HFAC
Sbjct: 88 DAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFAC 147
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
TSEDINNL+HALMLK A ++V+ P +LI + ++A +I +LSRTHGQPA+P+T+G
Sbjct: 148 TSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIG 207
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
KE++ A R+ R+ ++++QVEI+GK GAVGNYNAH++AYP+V+W Q +E+FV SLG+ +
Sbjct: 208 KEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQW 267
Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
NPY TQIE HDY+A+LF RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPHK
Sbjct: 268 NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHK 327
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL 436
VNPIDFENSEGNLG +N L L+ KLP+SRWQRDLTDSTVLRN+G G+G++L+AY+S L
Sbjct: 328 VNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL 387
Query: 437 QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIRE 496
+G++KL+VN L D+L+H WEVLAEPIQTVMRRYG+ +PYEKLKELTRGK V E +++
Sbjct: 388 KGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQ 447
Query: 497 FIIGLELPEEAKANLLNLTPHNYVGAA 523
FI GL LPEE KA L +TP NY+G A
Sbjct: 448 FIDGLALPEEEKARLKAMTPANYIGRA 474
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 586 bits (1511), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/448 (61%), Positives = 350/448 (78%)
Query: 76 FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFS 135
ELSSLTA+SP+DGRY KV L SEYGL+ FRV VE++WL KL+ + EVP+F+
Sbjct: 1 MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFA 60
Query: 136 EEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFA 195
+A YL ++ F+ +DA +K IER TNHDVKAVEYFLK+K PE+ V EF HFA
Sbjct: 61 ADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFA 120
Query: 196 CTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTL 255
CTSEDINNL+HALMLK A ++V+ P +LI L ++A +I +LSRT+GQPA+P+T+
Sbjct: 121 CTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTNGQPATPSTI 180
Query: 256 GKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS 315
GKE++ A R+ R+ ++++QVEI+GK GAVGNYNAH++AYP+V+W Q +E+FV SLG+
Sbjct: 181 GKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ 240
Query: 316 FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
+NPY TQIE HDY+A+LF RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPH
Sbjct: 241 WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPH 300
Query: 376 KVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA 435
KVNPIDFENSEGNLG +N L L+ KLP+SRWQRDLTDSTVLRN+G G+G++L+AY+S
Sbjct: 301 KVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQST 360
Query: 436 LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIR 495
L+G++KL+VN L D+L+H WEVLAEPIQTVMRRYG+ +PYEKLKELTRGK V E ++
Sbjct: 361 LKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMK 420
Query: 496 EFIIGLELPEEAKANLLNLTPHNYVGAA 523
+FI GL LPEE KA L +TP NY+G A
Sbjct: 421 QFIDGLALPEEEKARLKAMTPANYIGRA 448
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/448 (61%), Positives = 349/448 (77%)
Query: 76 FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFS 135
ELSSLTA+SP+DGRY KV L SEYGL+ FRV VE++WL KL+ + EVP+F+
Sbjct: 1 MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFA 60
Query: 136 EEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFA 195
+A YL ++ F+ +DA +K IER TNHDVKAVEYFLK+K PE+ V EF HFA
Sbjct: 61 ADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFA 120
Query: 196 CTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTL 255
CTSEDINNL+HALMLK A ++V+ P +LI L ++A +I +LSRT GQPA+P+T+
Sbjct: 121 CTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTI 180
Query: 256 GKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS 315
GKE++ A R+ R+ ++++QVEI+GK GAVGNYNAH++AYP+V+W Q +E+FV SLG+
Sbjct: 181 GKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ 240
Query: 316 FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
+NPY TQIE HDY+A+LF RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPH
Sbjct: 241 WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPH 300
Query: 376 KVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA 435
KVNPIDFENSEGNLG +N L L+ KLP+SRWQRDLTDSTVLRN+G G+G++L+AY+S
Sbjct: 301 KVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQST 360
Query: 436 LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIR 495
L+G++KL+VN L D+L+H WEVLAEPIQTVMRRYG+ +PYEKLKELTRGK V E ++
Sbjct: 361 LKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMK 420
Query: 496 EFIIGLELPEEAKANLLNLTPHNYVGAA 523
+FI GL LPEE KA L +TP NY+G A
Sbjct: 421 QFIDGLALPEEEKARLKAMTPANYIGRA 448
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 577 bits (1487), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/447 (61%), Positives = 343/447 (76%)
Query: 77 ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
ELSSLTA+SP+DGRY KV L SEYGL+ FRV VE++WL KL+ + EVP+F+
Sbjct: 2 ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAA 61
Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
+A YL ++ F+ +DA +K IER TNHDVKAVEYFLK+K PE+ V EF HFAC
Sbjct: 62 DAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFAC 121
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
TSEDINNL+HAL LK A ++V+ P +LI L ++A +I +LSRTHGQPA+P+T+G
Sbjct: 122 TSEDINNLSHALXLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTHGQPATPSTIG 181
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
KE + A R R+ ++++QVEI+GK GAVGNYNAH++AYP+V+W Q +E+FV SLG+ +
Sbjct: 182 KEXANVAYRXERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQW 241
Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
NPY TQIE HDY+A+LF RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSST PHK
Sbjct: 242 NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTXPHK 301
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL 436
VNPIDFENSEGNLG +N L L+ KLP+SRWQRDLTDSTVLRN+G G+G++L+AY+S L
Sbjct: 302 VNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL 361
Query: 437 QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIRE 496
+G++KL+VN L D+L+H WEVLAEPIQTV RRYG+ +PYEKLKELTRGK V E ++
Sbjct: 362 KGVSKLEVNRDHLLDELDHNWEVLAEPIQTVXRRYGIEKPYEKLKELTRGKRVDAEGXKQ 421
Query: 497 FIIGLELPEEAKANLLNLTPHNYVGAA 523
FI GL LPEE KA L TP NY+G A
Sbjct: 422 FIDGLALPEEEKARLKAXTPANYIGRA 448
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Legionella Pneumophila
Length = 459
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/451 (52%), Positives = 321/451 (71%)
Query: 78 LSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEE 137
L++L A+SP+DGRY +K + L+PY SE+ L Y+R+ VEIKW L+ + EVP+ +
Sbjct: 6 LTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLXVEIKWFESLAANDTIPEVPALDNK 65
Query: 138 AKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACT 197
A+ +L LI FN +A ++K E+ TNHDVKAVEY+L+ K Q ++ + F HFACT
Sbjct: 66 ARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACT 125
Query: 198 SEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGK 257
SEDINNLA+AL +K+AI +V+ P + ++ ++ + K +A+++ LSRTHGQPA+PTT GK
Sbjct: 126 SEDINNLAYALXIKQAIAQVIQPTIAEIXGSITLLGKQHADVAXLSRTHGQPATPTTXGK 185
Query: 258 EISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFN 317
E+ F RL R +Q++++V I KF GAVGNYNAH++AYP+V+W + +FV SLGLSFN
Sbjct: 186 ELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFN 245
Query: 318 PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKV 377
Y TQIE HD +A++ VR NNIL+D+ +D+W YISL YFKQ T A E+GSST PHKV
Sbjct: 246 AYTTQIEPHDGIAEVSQIXVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTXPHKV 305
Query: 378 NPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQ 437
NPIDFEN+EGNLG +N + KL SR QRDL+DSTVLRN+G +SL+AY S +
Sbjct: 306 NPIDFENAEGNLGLSNALFIHFANKLTQSRXQRDLSDSTVLRNLGVAFSYSLIAYHSVAK 365
Query: 438 GIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREF 497
G KLQ+N++ L DL+ WEVLAE IQTV RRY P YE+LKELTRG+ + E++++F
Sbjct: 366 GNDKLQINKSALQKDLSENWEVLAEAIQTVXRRYNEPNAYEQLKELTRGQXIDAENLKKF 425
Query: 498 IIGLELPEEAKANLLNLTPHNYVGAAAELAR 528
I L +PEEAKA L LTP Y G A +L +
Sbjct: 426 IKTLSIPEEAKAELXKLTPETYTGLATQLVK 456
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/446 (49%), Positives = 302/446 (67%), Gaps = 7/446 (1%)
Query: 81 LTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSK-IPEVTEVPSFSEEAK 139
L ALSPLDGRY + K L + SEYG +RVLVE+++ L K +P + + S ++E
Sbjct: 21 LFALSPLDGRYKRQTKALRAFFSEYGFFRYRVLVEVEYFTALCKDVPTIVPLRSVTDEQL 80
Query: 140 SYLQGL-IDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTS 198
L+ + +D F++ A E+K +ERVTNHD+KAVEYF+K++ + ++ V EF HF TS
Sbjct: 81 QKLRKITLDCFSVSSAEEIKRLERVTNHDIKAVEYFIKERMDTC-GLSHVTEFVHFGLTS 139
Query: 199 EDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKE 258
+DINN A +M+++AI + P +D +I +L D ++ ML+RTHGQPASPT L KE
Sbjct: 140 QDINNTAIPMMIRDAIVTLYLPALDGIIGSLTSKLVD-WDVPMLARTHGQPASPTNLAKE 198
Query: 259 ISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV-KSLGLSFN 317
V+ RL +R+++ +V GKF GA GN+NAHL AYP VNW + F+ K LGL
Sbjct: 199 FVVWIERLREQRRQLCEVPTTGKFGGATGNFNAHLVAYPSVNWRAFADMFLAKYLGLKRQ 258
Query: 318 PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKV 377
TQIE +D++A L A R + ILID RDVW YIS+ +FKQ K GE+GSSTMPHKV
Sbjct: 259 QATTQIENYDHLAALCDACARLHVILIDMCRDVWQYISMGFFKQKVKEGEVGSSTMPHKV 318
Query: 378 NPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQ 437
NPIDFEN+EGNL +N L+F + KLPISR QRDLTDSTVLRN+G +GH+ +A+ S Q
Sbjct: 319 NPIDFENAEGNLALSNALLNFFASKLPISRLQRDLTDSTVLRNLGVPIGHACVAFASISQ 378
Query: 438 GIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKV-VTKESIRE 496
G+ KL ++ +S +L+ W V+AE IQTV+RR P+PYE LK+LT+G VT+E +R
Sbjct: 379 GLEKLMISRETISRELSSNWAVVAEGIQTVLRRECYPKPYETLKKLTQGNTDVTEEQVRN 438
Query: 497 FIIGL-ELPEEAKANLLNLTPHNYVG 521
FI GL ++ ++ +A LL +TP YVG
Sbjct: 439 FINGLTDISDDVRAELLAITPFTYVG 464
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/456 (44%), Positives = 288/456 (63%), Gaps = 7/456 (1%)
Query: 81 LTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS 140
L +SP+DGRY +L+ + SE+ LI R++VE++WLL L++ E ++ +
Sbjct: 5 LKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNE--EELFFEKVTDHSVE 62
Query: 141 YLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQS--QPEIAKVLEFFHFACTS 198
L + D VK IE TNHDVKAVEYF+K+K ++ + ++ K+ E+ H+ CTS
Sbjct: 63 VLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTS 122
Query: 199 EDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKE 258
EDINN+A+A LK +N V+ P ++K++ L ++A + +++ +LSRTHGQPAS TT GKE
Sbjct: 123 EDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKE 182
Query: 259 ISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS-LGLSFN 317
++ F R+ I +V++ KF GAVGN+NAH A D +W F+K L+++
Sbjct: 183 MANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYS 242
Query: 318 PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKV 377
Y TQI+ HDY+ +L R N LID D+W YIS K K E+GSSTMPHKV
Sbjct: 243 IYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTMPHKV 302
Query: 378 NPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQ 437
NPIDFEN+EGNL AN S KLP SR QRDL+DSTVLRN+G L + L+AYKS L+
Sbjct: 303 NPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLK 362
Query: 438 GIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREF 497
G+ K+ ++ L ++LN W LAEPIQ VM+R+ + YE+LK+ TRGKV+ ++ ++EF
Sbjct: 363 GLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKIMQEF 422
Query: 498 I--IGLELPEEAKANLLNLTPHNYVGAAAELARNVD 531
I LP++ LL LTP Y G A LA+NV+
Sbjct: 423 IKTKCAFLPQDVVDQLLELTPATYTGYADYLAKNVE 458
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/456 (44%), Positives = 283/456 (62%), Gaps = 7/456 (1%)
Query: 81 LTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS 140
L +SP+DGRY +L+ + SE+ LI R++VE++WLL L++ E ++ +
Sbjct: 22 LKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNE--EELFFEKVTDHSVE 79
Query: 141 YLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQS--QPEIAKVLEFFHFACTS 198
L + D VK IE TNHDVKAVEYF+K+K ++ + ++ K+ E+ H+ CTS
Sbjct: 80 VLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTS 139
Query: 199 EDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKE 258
EDINN+A+A LK +N V+ P ++K+ L ++A + +++ +LSRTHGQPAS TT GKE
Sbjct: 140 EDINNVAYATCLKACLNDVVIPCLEKIXLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKE 199
Query: 259 ISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS-LGLSFN 317
+ F R+ I +V++ KF GAVGN+NAH A D +W F+K L+++
Sbjct: 200 XANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYS 259
Query: 318 PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKV 377
Y TQI+ HDY+ +L R N LID D+W YIS K K E+GSST PHKV
Sbjct: 260 IYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTXPHKV 319
Query: 378 NPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQ 437
NPIDFEN+EGNL AN S KLP SR QRDL+DSTVLRN+G L + L+AYKS L+
Sbjct: 320 NPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLK 379
Query: 438 GIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREF 497
G+ K+ ++ L ++LN W LAEPIQ V +R+ + YE+LK+ TRGKV+ ++ +EF
Sbjct: 380 GLNKIDIDRRNLEEELNQNWSTLAEPIQIVXKRHNYVDAYEELKQFTRGKVIDQKIXQEF 439
Query: 498 I--IGLELPEEAKANLLNLTPHNYVGAAAELARNVD 531
I LP++ LL LTP Y G A LA+NV+
Sbjct: 440 IKTKCAFLPQDVVDQLLELTPATYTGYADYLAKNVE 475
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 40/312 (12%)
Query: 158 KNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV 217
K IE TNHDV A F++ E ++ FFH+ TS D+ + A++L L EA K+
Sbjct: 60 KKIEEKTNHDVVA---FVEGIGSMIGEDSR---FFHYGLTSSDVLDTANSLALVEA-GKI 112
Query: 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG-------KEISVFAIRLGRER 270
+ + + L E+A + + RTHG A PT+ G E+ RL R
Sbjct: 113 LLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAI 172
Query: 271 QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHD--- 327
+E+S GK +GAVGNY + P P++ E + LGL P TQ+ D
Sbjct: 173 EEVS----YGKISGAVGNY----ANVP----PEVEEKALSYLGLKPEPVSTQVVPRDRHA 220
Query: 328 -YMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSE 386
Y++ L I ++ + ++ + G+ GSS MPHK NPI E
Sbjct: 221 FYLSTLAIVAAGIERIAVEIRH--LQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLT 278
Query: 387 G--NLGKANEDLSFLSMKLPISRW-QRDLTDSTVLRNMGGGLGHSL-LAYKSALQGIAKL 442
G + +A D S ++ L W +RD++ S+V R + +L +A + +
Sbjct: 279 GLSRMMRAYVDPSLENIAL----WHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNM 334
Query: 443 QVNEARLSDDLN 454
+VNE R+ +++
Sbjct: 335 KVNEERMKKNID 346
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 40/312 (12%)
Query: 158 KNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV 217
K IE TNHDV A F++ E ++ FFH+ TS D+ + A++L L EA K+
Sbjct: 59 KKIEEKTNHDVVA---FVEGIGSMIGEDSR---FFHYGLTSSDVLDTANSLALVEA-GKI 111
Query: 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG-------KEISVFAIRLGRER 270
+ + + L E+A + + RTHG A PT+ G E+ RL R
Sbjct: 112 LLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAI 171
Query: 271 QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHD--- 327
+E+S GK +GAVGNY + P P++ E + LGL P TQ+ D
Sbjct: 172 EEVS----YGKISGAVGNY----ANVP----PEVEEKALSYLGLKPEPVSTQVVPRDRHA 219
Query: 328 -YMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSE 386
Y++ L I ++ + ++ + G+ GSS MPHK NPI E
Sbjct: 220 FYLSTLAIVAAGIERIAVEIRH--LQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLT 277
Query: 387 G--NLGKANEDLSFLSMKLPISRW-QRDLTDSTVLRNMGGGLGHSL-LAYKSALQGIAKL 442
G + +A D S ++ L W +RD++ S+V R + +L +A + +
Sbjct: 278 GLSRMMRAYVDPSLENIAL----WHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNM 333
Query: 443 QVNEARLSDDLN 454
+VNE R+ +++
Sbjct: 334 KVNEERMKKNID 345
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 158 KNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV 217
+ IE+ T HDV A F +Q ++ E K + H+ TS D+ + A + ++K+A N +
Sbjct: 60 QEIEQETRHDVVA---FTRQVSETLGEERK---WVHYGLTSTDVVDTALSFVIKQA-NDI 112
Query: 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQV- 276
+ +++ I L E AK+ M+ RTHG A PTT G +++++ + R Q QV
Sbjct: 113 IEKDLERFIDVLAEKAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVR 172
Query: 277 -EI-MGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFY 334
EI +GK +GAVG + + P P+I K LG+ P TQ D A
Sbjct: 173 EEIEVGKMSGAVGTF----ANIP----PEIESYVCKHLGIGTAPVSTQTLQRDRHAYYIA 224
Query: 335 AFVRFNNILIDFDRDVWGYISLAYFKQVTKA---GEIGSSTMPHKVNPIDFENSEG 387
L F ++ + ++V +A G+ GSS MPHK NPI EN G
Sbjct: 225 TLALIATSLEKFAVEIRN-LQKTETREVEEAFAKGQKGSSAMPHKRNPIGSENITG 279
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 25/245 (10%)
Query: 149 FNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHAL 208
F+++ LE IE+ T HDV A F + +S E K + H+ TS D+ + A +
Sbjct: 54 FDINRILE---IEKDTRHDVVA---FTRAVSESLGEERK---WVHYGLTSTDVVDTALSY 104
Query: 209 MLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGR 268
+LK+A N ++ +++ + + E AK++ M+ RTHG A PTT G +++++ + R
Sbjct: 105 LLKQA-NDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKR 163
Query: 269 ERQEISQVEI---MGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIET 325
+ Q + +GK +GAVG Y A++ P + + + LGL P TQ
Sbjct: 164 NLERFKQAKAGIEVGKISGAVGTY-ANID-------PFVEQYVCEKLGLKAAPISTQTLQ 215
Query: 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTK---AGEIGSSTMPHKVNPIDF 382
D A + F ++ G + + ++V + G+ GSS MPHK NPI
Sbjct: 216 RDRHADYMATLALIATSIEKFAVEIRG-LQKSETREVEEFFAKGQKGSSAMPHKRNPIGS 274
Query: 383 ENSEG 387
EN G
Sbjct: 275 ENMTG 279
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 35/296 (11%)
Query: 104 EYGLIY-----FRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK 158
E G I+ F+ +E++ +L E+ ++P E+ K + F++D E
Sbjct: 18 EMGAIWTEENKFKAWLEVE-ILACEAWAELGDIPK--EDVKKIREHA--SFDIDRIYE-- 70
Query: 159 NIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVM 218
IE+ T HDV A + P + + ++ H+ TS D+ + A + +LK+A N+++
Sbjct: 71 -IEKETRHDVVA----FTRAVSETPALGEERKWVHYGLTSTDVVDTALSYILKQA-NEII 124
Query: 219 FPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE- 277
++ + L AK++ M+ RTHG A PTT G ++ ++ + R + Q
Sbjct: 125 LKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAAN 184
Query: 278 --IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV-KSLGLSFNPYVTQIETHDYMAKLFY 334
+GK +GAVG Y N E +V ++LGL P TQ D A
Sbjct: 185 TVRVGKLSGAVGTY---------ANIDPFVEKYVCENLGLEAAPISTQTLQRDRHAHYMS 235
Query: 335 AFVRFNNILIDFDRDVWGYISLAYFKQVTKA---GEIGSSTMPHKVNPIDFENSEG 387
+ ++ G + + ++V +A G+ GSS MPHK NPI EN G
Sbjct: 236 TLALIATSIEKMAVEIRG-LQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTG 290
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 117/251 (46%), Gaps = 49/251 (19%)
Query: 157 VKNIERVTNHDVKAVEYFLKQKCQSQPE--IAKVLEFFHFACTSEDINNLAHALMLKEAI 214
V IE+VT HD+ A C S E A+ +FFHF TS DI + A +L +++++
Sbjct: 58 VDEIEKVTKHDIIAF-------CTSIAEQFTAETGKFFHFGVTSSDIIDSALSLQIRDSM 110
Query: 215 NKVMFPVMDKLIKALCEI----AKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRER 270
+ V+ K ++ALC+ A++ I + R+HG A P + G++ + R
Sbjct: 111 SYVI-----KDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRL 165
Query: 271 QEISQVEIMG---KFAGAVGNYNAHLSAYPDVNWPQITEDFVKS---LGLSFNPYVTQIE 324
+++ + G +F+GAVGNY TED K+ LGL TQ+
Sbjct: 166 KDLKDFQKDGLTVQFSGAVGNY-----------CILTTEDEKKAADILGLPVEEVSTQVI 214
Query: 325 THDYMAKLF-------YAFVRFNNILIDFDR-DVWGYISLAYFKQVTKAGEIGSSTMPHK 376
D +AKL A R + R DV+ ++ +K G+ GSSTMPHK
Sbjct: 215 PRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVF-----EVYEGFSK-GQKGSSTMPHK 268
Query: 377 VNPIDFENSEG 387
NPI EN G
Sbjct: 269 KNPISTENLTG 279
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 159/364 (43%), Gaps = 59/364 (16%)
Query: 191 FFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPA 250
+ H TS+D + L L++A++ ++ + KL L + A +A+ ++ RT Q A
Sbjct: 99 YVHLGATSQDAMDTGLVLQLRDALD-LIEADLGKLADTLSQQALKHADTPLVGRTWLQHA 157
Query: 251 SPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITED 307
+P TLG +++ L R RQ + ++ ++ +F GA G+ L+A P + E
Sbjct: 158 TPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGS----LAALGSKAMP-VAEA 212
Query: 308 FVKSLGLSF--NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKA 365
+ L L+ P+ TQ D + + L F RD+ + Q T+A
Sbjct: 213 LAEQLKLTLPEQPWHTQ---RDRLVEFASVLGLVAGSLGKFGRDI------SLLMQ-TEA 262
Query: 366 GEI---------GSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLP------ISRWQR 410
GE+ GSSTMPHK NP+ G + LS L +P + W
Sbjct: 263 GEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHA 322
Query: 411 D---LTDSTVLRNMGGGLGHSLLAYKSALQGIAK-LQVNEARLSDDLNHAWE-VLAEPIQ 465
+ L D L + G L + Q IA+ ++V+ AR+ +L+ VLAE +
Sbjct: 323 EWETLPDICCL--VSGALRQA--------QVIAEGMEVDAARMRRNLDLTQGLVLAEAVS 372
Query: 466 TVM-RRYGVPEPYEKLKELTRGKVVTKESIREFI-----IGLELPEEAKANLLNLTPHNY 519
V+ +R G + L++ + V + +R + + EL E LL+ P +Y
Sbjct: 373 IVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLD--PAHY 430
Query: 520 VGAA 523
+G A
Sbjct: 431 LGQA 434
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 155/344 (45%), Gaps = 43/344 (12%)
Query: 156 EVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAIN 215
EV +ER T HD+ ++ L+QK + + H+ TS DI + A AL+++ A+
Sbjct: 62 EVYRLERETGHDILSLVLLLEQKSGCR--------YVHYGATSNDIIDTAWALLIRRALA 113
Query: 216 KV---MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
V V D+L +A+ + M+ RTHGQ A P TLG + + + L ++
Sbjct: 114 AVKEKARAVGDQL----ASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQ 169
Query: 273 ISQVE--IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMA 330
++ E I K GAVG ++++ ++ ++ + LGL + TQ+ +
Sbjct: 170 LALAEEFIRAKIGGAVGT----MASWGELG-LEVRRRVAERLGLPHHVITTQVAPRE--- 221
Query: 331 KLFYAFVRFNNILIDFDRDVWGYISLAYFK-QVTKAGEIGSSTMPHKVNPIDFEN--SEG 387
+ F+R L+ + G GSS MPHK NP E S
Sbjct: 222 SFAVLASALALMAAVFERLAVEIRELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLA 281
Query: 388 NLGKANEDLSFLSMKLPISRW-QRDLTDSTVLRNMGGGLGHSLLA----YKSALQGIAKL 442
+A ++F ++ L W +RDLT+S N + +LLA SAL+ + +
Sbjct: 282 RYVRALTHVAFENVAL----WHERDLTNSA---NERVWIPEALLALDEILTSALRVLKNV 334
Query: 443 QVNEARLSDDLNHAWE-VLAEPIQTVMRRYGV--PEPYEKLKEL 483
++E R++++L A +L E M + G E Y+K KE+
Sbjct: 335 YIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEV 378
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 29/310 (9%)
Query: 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE---EAKSY 141
SPL RY S + Y +R L WL L++ + +P E E KS
Sbjct: 18 SPLASRYASPEMCFV-FSDRYKFRTWRQL----WLW-LAEAEQTLGLPITDEQIREMKSN 71
Query: 142 LQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDI 201
L+ N+D + + +R+ HDV A + C P+ A ++ H TS +
Sbjct: 72 LE------NIDFKMAAEEEKRL-RHDVMAHVHTFGHCC---PKAAGII---HLGATSCYV 118
Query: 202 NNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISV 261
+ ++L+ A++ ++ P + ++I L + AK+ A++ L TH QPA TT+GK +
Sbjct: 119 GDNTDLIILRNALD-LLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCL 177
Query: 262 FAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYP-----DVNWPQITEDFVKSLGLSF 316
+ L + Q + +V +F G G S D Q+ + + G
Sbjct: 178 WIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 237
Query: 317 NPYVT-QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
+T Q T ++ + D+ +L ++ + +IGSS MP+
Sbjct: 238 AFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPY 297
Query: 376 KVNPIDFENS 385
K NP+ E
Sbjct: 298 KRNPMRSERC 307
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 29/310 (9%)
Query: 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE---EAKSY 141
SPL RY S + Y +R L WL L++ + +P E E KS
Sbjct: 37 SPLASRYASPEMCFV-FSDRYKFRTWRQL----WLW-LAEAEQTLGLPITDEQIREMKSN 90
Query: 142 LQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDI 201
L+ N+D + + +R+ HDV A + C P+ A ++ H TS +
Sbjct: 91 LE------NIDFKMAAEEEKRL-RHDVMAHVHTFGHCC---PKAAGII---HLGATSCYV 137
Query: 202 NNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISV 261
+ ++L+ A++ ++ P + ++I L + AK+ A++ L TH QPA TT+GK +
Sbjct: 138 GDNTDLIILRNALD-LLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCL 196
Query: 262 FAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYP-----DVNWPQITEDFVKSLGLSF 316
+ L + Q + +V +F G G S D Q+ + + G
Sbjct: 197 WIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 256
Query: 317 NPYVT-QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
+T Q T ++ + D+ +L ++ + +IGSS MP+
Sbjct: 257 AFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPY 316
Query: 376 KVNPIDFENS 385
K NP+ E
Sbjct: 317 KRNPMRSERC 326
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 33/359 (9%)
Query: 190 EFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249
++ H+ T++DI + A L +++ + + + + + KAL +A+++ + M RTH Q
Sbjct: 96 KYLHWGATTQDIMDTATVLQIRDGLALISRRI-ESVRKALAALARNHRDTPMAGRTHLQH 154
Query: 250 ASPTTLGKEISVFAIRLGRER---QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITE 306
A P T G + +V+ R +EIS ++ +F+GA G + + DV
Sbjct: 155 ALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQ-----R 209
Query: 307 DFVKSLGLSFNPYVTQIETHDYMAKL--FYAFVRFNNILIDFDRDVWGYISLAYFKQVTK 364
+ + L L P +T D +A+ F A V + + D + L +
Sbjct: 210 ELARELNLGV-PSITWHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFV 268
Query: 365 AGEIGSSTMPHKVNPIDFE------NSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVL 418
SSTMP K NP+ E N + D + W L S V
Sbjct: 269 RHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLDAMIHDFERATGPWH--LEWSAVP 326
Query: 419 RNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRRY-GVPEP 476
G + Y++ + LQV R+ ++L+H+ ++AE + + + G E
Sbjct: 327 EGFAVASG---ILYQAEFM-LGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTGRKEA 382
Query: 477 YEKLKELTRGKVVTKESIREFIIGLELPEEAKA----NLLNLT-PHNYVGAAAELARNV 530
++ + R V K + E + +PE AK L +LT P NY+G+A + NV
Sbjct: 383 HDIVYLGCRRAVEDKTGLFEVL--RTMPEVAKPLGEEALRDLTDPRNYLGSAGAMVDNV 439
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 128/308 (41%), Gaps = 29/308 (9%)
Query: 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE---EAKSY 141
SPL RY S + Y +R L WL L++ + +P E E KS
Sbjct: 18 SPLASRYASPEMCFV-FSDRYKFRTWRQL----WLW-LAEAEQTLGLPITDEQIREMKSN 71
Query: 142 LQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDI 201
L+ N+D + + +R+ HDV A + C P+ A ++ H TS +
Sbjct: 72 LE------NIDFKMAAEEEKRL-RHDVMAHVHTFGHCC---PKAAGII---HLGATSCYV 118
Query: 202 NNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISV 261
+ ++L+ A++ ++ P + ++I L + AK+ A++ L TH QPA TT+GK +
Sbjct: 119 GDNTDLIILRNALD-LLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCL 177
Query: 262 FAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYP-----DVNWPQITEDFVKSLGLSF 316
+ L + Q + +V +F G G S D Q+ + + G
Sbjct: 178 WIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 237
Query: 317 NPYVT-QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
+T Q T ++ + D+ +L ++ + +IGSS MP+
Sbjct: 238 AFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPY 297
Query: 376 KVNPIDFE 383
K NP+ E
Sbjct: 298 KRNPMRSE 305
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 29/310 (9%)
Query: 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE---EAKSY 141
SPL RY S + Y +R L WL L++ + +P E E KS
Sbjct: 37 SPLASRYASPEMCFV-FSDRYKFRTWRQL----WLW-LAEAEQTLGLPITDEQIQEMKSN 90
Query: 142 LQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDI 201
L+ N+D + + +R+ HDV A + C P+ A ++ H TS +
Sbjct: 91 LE------NIDFKMAAEEEKRL-RHDVMAHVHTFGHCC---PKAAGII---HLGATSCYV 137
Query: 202 NNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISV 261
+ ++L+ A++ ++ P + ++I L + AK+ A++ L TH QPA TT+GK +
Sbjct: 138 GDNTDLIILRNALD-LLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCL 196
Query: 262 FAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYP-----DVNWPQITEDFVKSLGLSF 316
+ L + Q + +V +F G G S D Q+ + + G
Sbjct: 197 WIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 256
Query: 317 NPYVT-QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
+T Q T ++ + D+ +L ++ + +IGSS MP+
Sbjct: 257 AFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPY 316
Query: 376 KVNPIDFENS 385
K NP+ E
Sbjct: 317 KRNPMRSERC 326
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + + A+++ ++P ++ LI+ A+ I + RTH A P TLG
Sbjct: 139 SSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLG 198
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGN--YNAHLSAYPDVNWPQITEDFVKSLGL 314
+EI +A +L + ++E G + A+G L+A+P + + + GL
Sbjct: 199 QEIGSWAAQLKTTLAAVKEME-KGLYNLAIGGTAVGTGLNAHPRFG-ELVAKYLAEETGL 256
Query: 315 SF----NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAY--FKQVT-KAGE 367
F N + + HD + + A L+ DV S Y ++T A E
Sbjct: 257 PFRVAENRFAA-LAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANE 315
Query: 368 IGSSTMPHKVNPIDFE 383
GSS MP KVNP E
Sbjct: 316 PGSSIMPGKVNPTQVE 331
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 14/195 (7%)
Query: 191 FFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPA 250
+ H+ TS+DI + A L ++A+ V V AL + A+ + M+ RT Q A
Sbjct: 103 YVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQ-AQTYRHQVMMGRTWLQQA 161
Query: 251 SPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITED 307
P TLG +++ +A R+ I+ ++ ++ + GAVG+ L++ D + E
Sbjct: 162 LPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGS----LASLQDQG-SIVVEA 216
Query: 308 FVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQV---TK 364
+ K L L E D + ++ + RD W + +V T
Sbjct: 217 YAKQLKLGQTACTWHGE-RDRIVEIASVLGIITGNVGKMARD-WSLMMQTEIAEVFEPTA 274
Query: 365 AGEIGSSTMPHKVNP 379
G GSSTMPHK NP
Sbjct: 275 KGRGGSSTMPHKRNP 289
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Query: 214 INKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEI 273
I + P + L AL +K+ +I + RTH Q A+P TLG+E S + ++ Q +
Sbjct: 181 IQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRV 240
Query: 274 SQ----VEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIE---TH 326
+ + + + AVG L+ P + +I E K GL F + E H
Sbjct: 241 AHSLKTLSFLAQGGTAVG---TGLNTKPGFDV-KIAEQISKETGLKFQTAPNRFEALAAH 296
Query: 327 DYMAKLFYAFVRFNNILIDFDRDVWGYIS----LAYFKQVTKAGEIGSSTMPHKVNPIDF 382
D + + A L +D+ Y+ Y + + E GSS MP KVNP
Sbjct: 297 DAIVECSGALNTLACSLFKIAQDIR-YLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQN 355
Query: 383 E 383
E
Sbjct: 356 E 356
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 76/193 (39%), Gaps = 38/193 (19%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ K + P + L + L E ++ A+I + RTH Q A+P TLG+EIS + L +
Sbjct: 155 ALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKH 214
Query: 273 IS----QVEIMGKFAGAVG-NYNAHLSAYPDVNWPQITEDFVKSLG-LSFNPYVT----- 321
I V + AVG N H P+ L ++ P+VT
Sbjct: 215 IEYSLPHVAELALGGTAVGTGLNTH---------PEYARRVADELAVITCAPFVTAPNKF 265
Query: 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDV-W---------GYISLAYFKQVTKAGEIGS 370
+ T D + + A L+ DV W G IS+ E GS
Sbjct: 266 EALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI-------PENEPGS 318
Query: 371 STMPHKVNPIDFE 383
S MP KVNP E
Sbjct: 319 SIMPGKVNPTQCE 331
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 76/193 (39%), Gaps = 38/193 (19%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ K + P + L + L E ++ A+I + RTH Q A+P TLG+EIS + L +
Sbjct: 155 ALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKH 214
Query: 273 IS----QVEIMGKFAGAVG-NYNAHLSAYPDVNWPQITEDFVKSLG-LSFNPYVT----- 321
I V + AVG N H P+ L ++ P+VT
Sbjct: 215 IEYSLPHVAELALGGTAVGTGLNTH---------PEYARRVADELAVITCAPFVTAPNKF 265
Query: 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDV-W---------GYISLAYFKQVTKAGEIGS 370
+ T D + + A L+ DV W G IS+ E GS
Sbjct: 266 EALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI-------PENEPGS 318
Query: 371 STMPHKVNPIDFE 383
S MP KVNP E
Sbjct: 319 SIMPGKVNPTQCE 331
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 76/193 (39%), Gaps = 38/193 (19%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ K + P + L + L E ++ A+I + RTH Q A+P TLG+EIS + L +
Sbjct: 155 ALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKH 214
Query: 273 IS----QVEIMGKFAGAVG-NYNAHLSAYPDVNWPQITEDFVKSLG-LSFNPYVT----- 321
I V + AVG N H P+ L ++ P+VT
Sbjct: 215 IEYSLPHVAELALGGTAVGTGLNTH---------PEYARRVADELAVITCAPFVTAPNKF 265
Query: 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDV-W---------GYISLAYFKQVTKAGEIGS 370
+ T D + + A L+ DV W G IS+ E GS
Sbjct: 266 EALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI-------PENEPGS 318
Query: 371 STMPHKVNPIDFE 383
S MP KVNP E
Sbjct: 319 SIMPGKVNPTQCE 331
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ K + P + L + L E ++ A+I + RTH Q A+P TLG+EIS + L +
Sbjct: 155 ALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKH 214
Query: 273 IS----QVEIMGKFAGAVG-NYNAHLSAYPDVNWPQITEDFVKSLG-LSFNPYVT----- 321
I V + AVG N H P+ L ++ P+VT
Sbjct: 215 IEYSLPHVAELALGGTAVGTGLNTH---------PEYARRVADELAVITCAPFVTAPNKF 265
Query: 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDV-WGYISLAYFKQVTKAGEI-------GSST 372
+ T D + + A L+ DV W LA + GEI GSS
Sbjct: 266 EALATCDALVQAHGALKGLAASLMKIANDVRW----LASGPRC-GIGEISIPENQPGSSI 320
Query: 373 MPHKVNPIDFE 383
MP KVNP E
Sbjct: 321 MPGKVNPTQCE 331
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
Query: 193 HFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252
HF TS+D+ + + L LK A +++ + LI L ++A + + + T Q A
Sbjct: 103 HFGATSQDVIDTSLMLRLKMA-AEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIG 161
Query: 253 TTLGKEISVFAIRLGRER---QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV 309
T+ + + L R + +Q +F GA G L D N + D
Sbjct: 162 ITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGT----LEKLGD-NAGAVRADLA 216
Query: 310 KSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIG 369
K LGL+ P D +A+ L F +D+ + ++ +G G
Sbjct: 217 KRLGLADRPQWHN--QRDGIAEFANLLSLVTGTLGKFGQDI--ALMAEIGSEIRLSGGGG 272
Query: 370 SSTMPHKVNPIDFEN 384
SS MPHK NP++ E
Sbjct: 273 SSAMPHKQNPVNAET 287
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 13/229 (5%)
Query: 157 VKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINK 216
+++ ER HDV A + + C P A ++ H TS + + A + +++I+
Sbjct: 73 IRSEERKLKHDVXAHNHAFGKLC---PTAAGII---HLGATSCFVQDNADLIAYRDSIDH 126
Query: 217 VMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQV 276
++ +I L + N + + RTH Q AS T+GK ++A L Q +S+
Sbjct: 127 IL-KRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLXAFQSLSEF 185
Query: 277 EIMGKF---AGAVGNYNAHLSAYP-DVNWPQITEDFVKSLGLSFNPYVTQIETHDYM--A 330
+F GA G ++ L+ + D + + ++ V N ++ +T+ +
Sbjct: 186 RDKXRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDS 245
Query: 331 KLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNP 379
+L ++ D+ + + + +IGSS P+K NP
Sbjct: 246 QLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQIGSSAXPYKKNP 294
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 76/193 (39%), Gaps = 38/193 (19%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ K + P + L + L E ++ A+I + RT+ Q A+P TLG+EIS + L +
Sbjct: 155 ALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKH 214
Query: 273 IS----QVEIMGKFAGAVG-NYNAHLSAYPDVNWPQITEDFVKSLG-LSFNPYVT----- 321
I V + AVG N H P+ L ++ P+VT
Sbjct: 215 IEYSLPHVAELALGGTAVGTGLNTH---------PEYARRVADELAVITCAPFVTAPNKF 265
Query: 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDV-W---------GYISLAYFKQVTKAGEIGS 370
+ T D + + A L+ DV W G IS+ E GS
Sbjct: 266 EALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI-------PENEPGS 318
Query: 371 STMPHKVNPIDFE 383
S MP KVNP E
Sbjct: 319 SIMPGKVNPTQCE 331
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 80/205 (39%), Gaps = 30/205 (14%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D+ A + AI + P + L L A A+I + RTH Q A+P TLG
Sbjct: 135 SSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADIVKIGRTHLQDATPLTLG 194
Query: 257 KEISVFAIRLGRERQEISQVEI-------MGKFAGAVG-NYNAHLSAYPDVNWPQITEDF 308
+E S + +L Q I VE + + AVG NAH P+
Sbjct: 195 QEFSGYVAQL---DQGIRHVEAALPHLYELAQGGTAVGTGLNAH---------PKFAAGV 242
Query: 309 VKSLG-LSFNPYVTQIETHDYMA---KLFYAFVRFNNI---LIDFDRDVWGYIS---LAY 358
+G L+ P+V+ + MA L +A + L+ D+ S
Sbjct: 243 AAEIGRLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGPRCGL 302
Query: 359 FKQVTKAGEIGSSTMPHKVNPIDFE 383
+ E GSS MP KVNP E
Sbjct: 303 GELSIPENEPGSSIMPGKVNPTQSE 327
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 22/201 (10%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + E + + P + L KAL E K +I + RTH Q A+P TLG
Sbjct: 171 SSNDTYPTAXHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLG 230
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQ-ITEDFVKSLGLS 315
+E S +A ++ + I + + G A G V + + + E+ G+
Sbjct: 231 QEFSGYAAQVASSIKRI-EXTLPGLCELAQGGTAVGTGLNAPVGFAEKVAEEIAAITGIG 289
Query: 316 FNPYVTQIE----------THDYMAKLFYAFVRFNN---ILIDFDRDVWGYISLAYFKQV 362
F + E +H + A + N L R G +SL
Sbjct: 290 FTSAPNKFEALAAHDSXVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSL------ 343
Query: 363 TKAGEIGSSTMPHKVNPIDFE 383
E GSS P KVNP E
Sbjct: 344 -PENEPGSSIXPGKVNPTQCE 363
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 87/233 (37%), Gaps = 24/233 (10%)
Query: 164 TNHDVKAVEYFLKQKCQSQPEIA-KVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVM 222
T+ ++ A E Q+ P + + + + +S D A L EA + + P +
Sbjct: 107 TSSNMNANEVIASIAAQATPPVVVHPNDDVNMSQSSNDTFPTATHLAATEAAVRDLIPAL 166
Query: 223 DKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRER-----QEISQ 275
+ L +AL AK + RTH A P TLG+E +A I G ER + +
Sbjct: 167 EYLQQALATKAKAWKTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGE 226
Query: 276 VEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS-FNPYVTQIETHDYMAKLFY 334
+ I G G NA PD ++ E +S GLS E L
Sbjct: 227 LPIGGTAVGT--GLNA-----PDGFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVE 279
Query: 335 AFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI-------GSSTMPHKVNPI 380
I + + I +T GEI GSS MP KVNP+
Sbjct: 280 GSGALKTIAASLTK-IANDIRWMGSGPLTGLGEIQLPDLQPGSSIMPGKVNPV 331
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 25/191 (13%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRE----RQEISQVEIM 279
+L AL E A++N + M TH Q A P T + L R+ + + ++++
Sbjct: 134 QLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVS 193
Query: 280 GKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYA---- 335
GA+ + W SL + D++ +L A
Sbjct: 194 PLGCGALAGTAYEIDREQLAGWLGFASATRNSL--------DSVSDRDHVLELLSAAAIG 245
Query: 336 ---FVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392
RF LI F+ G++ L+ +VT GSS MP K NP E G G+
Sbjct: 246 MVHLSRFAEDLIFFNTGEAGFVELS--DRVTS----GSSLMPQKKNPDALELIRGKCGRV 299
Query: 393 NEDLSFLSMKL 403
L+ + M L
Sbjct: 300 QGALTGMMMTL 310
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 26/187 (13%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEIS--VFAIRLGRER 270
A + + P ++ L+ L + +KD I + RTH Q A+P TL +E S + I ER
Sbjct: 176 ATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALER 235
Query: 271 QE--ISQVEIMGKFAGAVG-NYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHD 327
E + +V ++ + AVG N+ + D+ + Q +F + P+ T +
Sbjct: 236 IEDALKKVYLLAQGGTAVGTGINSKIGF--DIKFAQKVAEFTQQ------PFKTAPNKFE 287
Query: 328 YMAKLFYAFVRF----NNILIDFDRDVWGYISLAYFKQVTKAGEI-------GSSTMPHK 376
+A A V F N I + + + I L GE+ GSS MP K
Sbjct: 288 SLAA-HDALVEFSGTLNTIAVSLMK-IANDIRLLGSGPRCGLGELHLPENEPGSSIMPGK 345
Query: 377 VNPIDFE 383
VNP E
Sbjct: 346 VNPTQVE 352
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 26/186 (13%)
Query: 214 INKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA-------IRL 266
+++V+ P + KL AL +K+ A I + RTH Q A P TLG+E S + R+
Sbjct: 183 VHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRI 242
Query: 267 GRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT----- 321
I ++ G G N + +T GL P+VT
Sbjct: 243 KAAMPRIYELAAGGTAVGTGLNTRIGFAEKVAAKVAALT-------GL---PFVTAPNKF 292
Query: 322 -QIETHDYMAKLFYAFVRFNNILIDFDRDV--WGYISLAYFKQ-VTKAGEIGSSTMPHKV 377
+ HD + +L A L+ D+ G + + + E GSS MP KV
Sbjct: 293 EALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKV 352
Query: 378 NPIDFE 383
NP E
Sbjct: 353 NPTQCE 358
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 13/201 (6%)
Query: 190 EFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249
+ + + +S D A + EA + + P ++ L +L AK + RTH
Sbjct: 150 DHVNMSQSSNDTFPTATHIAATEAAVRHLIPALEVLHASLAAKAKQWRTVVKSGRTHLMD 209
Query: 250 ASPTTLGKEISVFA--IRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITED 307
A P TLG+E +A I G ER + + + +G+ A L+A P+ ++ E
Sbjct: 210 AVPVTLGQEFGGYARQIEAGIERVK-ATLPRLGELAIGGTAVGTGLNA-PEGFGAKVVEV 267
Query: 308 FVKSLGLS-FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAG 366
V GL+ V E L A I + + + I +T
Sbjct: 268 LVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTK-IANDIRWMGSGPLTGLA 326
Query: 367 EI-------GSSTMPHKVNPI 380
EI GSS MP KVNP+
Sbjct: 327 EIQLPDLQPGSSIMPGKVNPV 347
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + EA + P + +L AL A D + RTH A P TLG
Sbjct: 139 SSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLG 198
Query: 257 KEISVFA--IRLGRER-----QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV 309
+E S +A I G ER + ++ I G G NA PD ++ V
Sbjct: 199 QEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGT--GLNA-----PDDFGVRVVAVLV 251
Query: 310 KSLGLS-FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI 368
GLS E L A I + + + I +T EI
Sbjct: 252 AQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTK-IANDIRWMGSGPLTGLAEI 310
Query: 369 -------GSSTMPHKVNPI 380
GSS MP KVNP+
Sbjct: 311 QLPDLQPGSSIMPGKVNPV 329
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + EA + P + +L AL A D + RTH A P TLG
Sbjct: 160 SSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLG 219
Query: 257 KEISVFA--IRLGRER-----QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV 309
+E S +A I G ER + ++ I G G NA PD ++ V
Sbjct: 220 QEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGT--GLNA-----PDDFGVRVVAVLV 272
Query: 310 KSLGLS-FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI 368
GLS E L A I + + + I +T EI
Sbjct: 273 AQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTK-IANDIRWMGSGPLTGLAEI 331
Query: 369 -------GSSTMPHKVNPI 380
GSS MP KVNP+
Sbjct: 332 QLPDLQPGSSIMPGKVNPV 350
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + EA + P + +L AL A D + RTH A P TLG
Sbjct: 138 SSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLG 197
Query: 257 KEISVFA--IRLGRER-----QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV 309
+E S +A I G ER + ++ I G G NA PD ++ V
Sbjct: 198 QEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGT--GLNA-----PDDFGVRVVAVLV 250
Query: 310 KSLGLS-FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI 368
GLS E L A I + + + I +T EI
Sbjct: 251 AQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTK-IANDIRWMGSGPLTGLAEI 309
Query: 369 -------GSSTMPHKVNPI 380
G+S MP KVNP+
Sbjct: 310 QLPDLQPGASIMPGKVNPV 328
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 71/199 (35%), Gaps = 23/199 (11%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + EA + P + +L AL A D + RTH A P TLG
Sbjct: 138 SSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLG 197
Query: 257 KEISVFA--IRLGRER-----QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV 309
+E S +A I G ER + ++ I G G NA PD ++ V
Sbjct: 198 QEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGT--GLNA-----PDDFGVRVVAVLV 250
Query: 310 KSLGLS-FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI 368
GLS E L A I + + + I +T EI
Sbjct: 251 AQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTK-IANDIRWMGSGPLTGLAEI 309
Query: 369 -------GSSTMPHKVNPI 380
G S MP KVNP+
Sbjct: 310 QLPDLQPGCSIMPGKVNPV 328
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 207 ALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266
AL+L + N+V + +LI A ++ A + + RT Q A P TLG+E FA L
Sbjct: 172 ALLLSQ--NQVQ-TALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATL 228
Query: 267 GRERQEISQVEIMGK---FAG-AVGNYNAHLSAYPD---VNWPQITEDFVKSLGLSFNPY 319
+ + +V + + G A+G AY + V QI+ +K+ G N
Sbjct: 229 REDTARLEEVAALFREVNLGGTAIGTRINASHAYAEQAIVELSQISGIELKATG---NLV 285
Query: 320 VTQIETHDYMAKLFYAFVRFNNIL----IDFDRDVWGYISLAYFKQVTKAGEI------- 368
+T AFV F+ IL + + + + L + GEI
Sbjct: 286 EASWDTG--------AFVTFSGILRRIAVKLSK-IANDLRLLSSGPRSGLGEIRLPAVQP 336
Query: 369 GSSTMPHKVNPI 380
GSS MP KVNP+
Sbjct: 337 GSSIMPGKVNPV 348
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 207 ALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266
AL+L + N+V + +LI A ++ A + + RT Q A P TLG+E FA L
Sbjct: 155 ALLLSQ--NQVQ-TALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATL 211
Query: 267 GRERQEISQVEIMGK---FAG-AVGNYNAHLSAYPD---VNWPQITEDFVKSLGLSFNPY 319
+ + +V + + G A+G AY + V QI+ +K+ G N
Sbjct: 212 REDTARLEEVAALFREVNLGGTAIGTRINASHAYAEQAIVELSQISGIELKATG---NLV 268
Query: 320 VTQIETHDYMAKLFYAFVRFNNIL----IDFDRDVWGYISLAYFKQVTKAGEI------- 368
+T AFV F+ IL + + + + L + GEI
Sbjct: 269 EASWDTG--------AFVTFSGILRRIAVKLSK-IANDLRLLSSGPRSGLGEIRLPAVQP 319
Query: 369 GSSTMPHKVNPI 380
GSS MP KVNP+
Sbjct: 320 GSSIMPGKVNPV 331
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 30/279 (10%)
Query: 208 LMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLG 267
L+LK +I+ + ++ +LIK L E A +I M TH Q A P + + A+ L
Sbjct: 123 LLLKSSISVISTHLL-QLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALT 181
Query: 268 RERQEISQVEIM--------GKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPY 319
R+ + + +V+ G AG + L +++ IT + + ++ S +
Sbjct: 182 RDSERLGEVKKRITVLPLGSGVLAGNPLEIDREL-LRSELDMTSITLNSIDAI--SERDF 238
Query: 320 VTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNP 379
V +E L + LI F +G+++L+ A GSS +P K NP
Sbjct: 239 V--VELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLS------DAYSTGSSLLPQKKNP 290
Query: 380 IDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLT-DSTVLRNMGGGLGHSLLAYKSA 435
E G+ L+ + M L P S + +DL D + ++ L L + A
Sbjct: 291 DSLELIRSKAGRVFGRLAAILMVLKGIP-STFSKDLQEDKEAVLDVVDTLTAVL---QVA 346
Query: 436 LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVP 474
I+ LQ+N+ + L E+L+ + + R G+P
Sbjct: 347 TGVISTLQINKENMEKALTP--ELLSTDLALYLVRKGMP 383
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 120/302 (39%), Gaps = 30/302 (9%)
Query: 233 AKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEI------MGKFAGAV 286
A + A + + RTH Q A P LG+E +A + R+ + I+ MG A
Sbjct: 175 ADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGT 234
Query: 287 GNYNAHLSAYPDVNWPQITEDFVKSLG---LSFNPYVTQIETHDYMAKLFYAF--VRFNN 341
G L+A P+ +TE K G S V + D ++ A N
Sbjct: 235 G-----LNADPEY-ISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINM 288
Query: 342 ILIDFDRDVWGYISLAYFKQVT-KAGEIGSSTMPHKVNPIDFE-NSEGNLGKANEDLSFL 399
I D + A ++ A + GSS MP KVNP+ E ++ DL+
Sbjct: 289 SKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTIT 348
Query: 400 SMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAK-LQVNEARLSDDLNHAWE 458
S +++ ++ + + N+ + +KS + K ++ NE R+ + + +
Sbjct: 349 SAS-EAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIG 407
Query: 459 VLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREFIIGLELPEEAKANLLNLTPHN 518
+ I + G YE +L R +T ESIRE I + E + N + L P+
Sbjct: 408 I----ITAINPHVG----YETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEI-LNPYE 458
Query: 519 YV 520
+
Sbjct: 459 MI 460
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 25/261 (9%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + TH Q A P + + A+ L R+ + + +V+ K
Sbjct: 140 QLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 196
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDF-VKSLGLSFNPYVTQ----IETHDYMAKLFYAFV 337
+ + L+ P D++ + + S+ L+ +++ +E + L
Sbjct: 197 NVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLS 256
Query: 338 RFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397
+ LI + +G+++L + A GSS MP K NP E G+ L+
Sbjct: 257 KMAEDLIIYSTSEFGFLTL------SDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLA 310
Query: 398 FLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQG-IAKLQVNEARLSDDL 453
+ M LP S + +DL + + + +L A G I+ LQ+++ + L
Sbjct: 311 SILMVLKGLP-STYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEKAL 366
Query: 454 NHAWEVLAEPIQTVMRRYGVP 474
E+LA + + R GVP
Sbjct: 367 TP--EMLATDLALYLVRKGVP 385
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 13/194 (6%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + EA + P ++ L AL A + ++ RTH A P TLG
Sbjct: 147 SSNDTFPTATHIAATEAAVSHLIPALEILQDALATKALEWQSVVKSGRTHLMDAVPVTLG 206
Query: 257 KEISVFA--IRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGL 314
+E S +A I G ER + + +G+ A L+A P+ ++ V GL
Sbjct: 207 QEFSGYARQIEAGIERVR-ATLPRLGELAIGGTAVGTGLNA-PEGFGVKVVSVLVSQTGL 264
Query: 315 -SFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI----- 368
E L A I + + + I +T EI
Sbjct: 265 PQLRTAANSFEAQAARDGLVEASGALRTIAVSLTK-IANDIRWMGSGPLTGLAEIQLPDL 323
Query: 369 --GSSTMPHKVNPI 380
GSS MP KVNP+
Sbjct: 324 QPGSSIMPGKVNPV 337
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 25/261 (9%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + TH Q A P + + A+ L R+ + + +V+ K
Sbjct: 140 QLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 196
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDF-VKSLGLSFNPYVTQ----IETHDYMAKLFYAFV 337
+ + L+ P D++ + + S+ L+ +++ +E + L
Sbjct: 197 NVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLS 256
Query: 338 RFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397
+ LI + +G+++L + A G+S MP K NP E G+ L+
Sbjct: 257 KMAEDLIIYSTSEFGFLTL------SDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLA 310
Query: 398 FLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQG-IAKLQVNEARLSDDL 453
+ M LP S + +DL + + + +L A G I+ LQ+++ + L
Sbjct: 311 SILMVLKGLP-STYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEKAL 366
Query: 454 NHAWEVLAEPIQTVMRRYGVP 474
E+LA + + R GVP
Sbjct: 367 TP--EMLATDLALYLVRKGVP 385
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 25/261 (9%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + +H Q A P + + A+ L R+ + + +V+ K
Sbjct: 140 QLIKTLVERAAIEIDVILPGYSHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 196
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDF-VKSLGLSFNPYVTQ----IETHDYMAKLFYAFV 337
+ + L+ P D++ + + S+ L+ +++ +E + L
Sbjct: 197 NVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLS 256
Query: 338 RFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397
+ LI + +G+++L + A GSS MP K NP E G+ L+
Sbjct: 257 KMAEDLIIYSTSEFGFLTL------SDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLA 310
Query: 398 FLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQG-IAKLQVNEARLSDDL 453
+ M LP S + +DL + + + +L A G I+ LQ+++ + L
Sbjct: 311 SILMVLKGLP-STYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEKAL 366
Query: 454 NHAWEVLAEPIQTVMRRYGVP 474
E+LA + + R GVP
Sbjct: 367 TP--EMLATDLALYLVRKGVP 385
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 25/261 (9%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + H Q A P + + A+ L R+ + + +V+ K
Sbjct: 140 QLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 196
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDF-VKSLGLSFNPYVTQ----IETHDYMAKLFYAFV 337
+ + L+ P D++ + + S+ L+ +++ +E + L
Sbjct: 197 NVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLS 256
Query: 338 RFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397
+ LI + +G+++L + A GSS MP K NP E G+ L+
Sbjct: 257 KMAEDLIIYSTSEFGFLTL------SDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLA 310
Query: 398 FLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQG-IAKLQVNEARLSDDL 453
+ M LP S + +DL + + + +L A G I+ LQ+++ + L
Sbjct: 311 SILMVLKGLP-STYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEKAL 366
Query: 454 NHAWEVLAEPIQTVMRRYGVP 474
E+LA + + R GVP
Sbjct: 367 TP--EMLATDLALYLVRKGVP 385
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 29/263 (11%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + TH Q A P + + A+ L R+ + + +V+ K
Sbjct: 138 QLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 194
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAK-------LFYA 335
+ + L+ P D++ + + + +S N + I D++ + L
Sbjct: 195 NVLPLGSGALAGNPLDIDREMLRSEL-EFASISLNS-MDAISERDFVVEFLSVATLLLIH 252
Query: 336 FVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395
+ LI + +G+++L + A GSS MP K NP E G+
Sbjct: 253 LSKMAEDLIIYSTSEFGFLTL------SDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGR 306
Query: 396 LSFLSM---KLPISRWQRDLT-DSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSD 451
L+ + M LP S + +DL D + ++ L L + A I+ LQ+++ +
Sbjct: 307 LASILMVLKGLP-STYNKDLQEDKEAVIDVVDTLTAVL---QVATGVISTLQISKENMEK 362
Query: 452 DLNHAWEVLAEPIQTVMRRYGVP 474
L E+LA + + R G+P
Sbjct: 363 ALTP--EMLATDLALYLVRKGMP 383
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 19/258 (7%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + TH Q A P + + A+ L R+ + + +V+ K
Sbjct: 140 QLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 196
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNI 342
+ + L+ P D++ + + + +S N + I D++ + F +F I
Sbjct: 197 NVLPLGSGALAGNPLDIDREMLRSEL-EFASISLNS-MDAISERDFVVE-FLSFATLLMI 253
Query: 343 -LIDFDRDVWGYISLAY-FKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS 400
L D+ Y + + F + A GSS MP K NP E G+ L+ +
Sbjct: 254 HLSKMAEDLIIYSTSEFGFLTDSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASIL 313
Query: 401 M---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQG-IAKLQVNEARLSDDLNHA 456
M LP S + +DL + + + +L A G I+ LQ+++ + L
Sbjct: 314 MVLKGLP-STYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTP- 368
Query: 457 WEVLAEPIQTVMRRYGVP 474
E+LA + + R GVP
Sbjct: 369 -EMLATDLALYLVRKGVP 385
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 25/261 (9%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + T+ Q A P + + A+ L R+ + + +V+ K
Sbjct: 122 QLIKTLVERAAIEIDVILPGYTNLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 178
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDF-VKSLGLSFNPYVTQ----IETHDYMAKLFYAFV 337
+ + L+ P D++ + + S+ L+ +++ +E + L
Sbjct: 179 NVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLS 238
Query: 338 RFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397
+ LI + +G+++L + A GSS MP K NP E G+ L+
Sbjct: 239 KMAEDLIIYSTSEFGFLTL------SDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLA 292
Query: 398 FLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQG-IAKLQVNEARLSDDL 453
+ M LP S + +DL + + + +L A G I+ LQ+++ + L
Sbjct: 293 SILMVLKGLP-STYNKDLQED---KEAVFDVVDTLTAVLQVATGVISTLQISKENMEKAL 348
Query: 454 NHAWEVLAEPIQTVMRRYGVP 474
E+LA + + R GVP
Sbjct: 349 TP--EMLATDLALYLVRKGVP 367
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 233 AKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE------IMGKFAGAV 286
A + A + + RTH Q A P LG+E +A + R+ + I+ MG A
Sbjct: 175 ADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGT 234
Query: 287 GNYNAHLSAYPDVNWPQITEDFVKSLG---LSFNPYVTQIETHDYMAKLFYAF--VRFNN 341
G L+A P+ +TE K G S V + D ++ A N
Sbjct: 235 G-----LNADPEY-ISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINM 288
Query: 342 ILIDFDRDVWGYISLAYFKQVT-KAGEIGSSTMPHKVNPI 380
I D + A ++ A + GSS MP KVNP+
Sbjct: 289 SKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPV 328
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 29/263 (11%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFA 283
+LIK L E A ++ + TH Q A P + + A+ L R+ + + +V+ K
Sbjct: 138 QLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVK---KRI 194
Query: 284 GAVGNYNAHLSAYP-DVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAK-------LFYA 335
+ + L+ P D++ + + + +S N + I D++ + L
Sbjct: 195 NVLPLGSGALAGNPLDIDREMLRSEL-EFASISLNS-MDAISERDFVVEFLSVATLLLIH 252
Query: 336 FVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395
+ LI + +G+++L + A GSS MP K NP E G+
Sbjct: 253 LSKMAEDLIIYSTSEFGFLTL------SDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGR 306
Query: 396 LSFLSM---KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQG-IAKLQVNEARLSD 451
L+ + M LP S + +DL + + + +L A G I+ LQ+++ +
Sbjct: 307 LASILMVLKGLP-STYNKDLQED---KEAVIDVVDTLTAVLQVATGVISTLQISKENMEK 362
Query: 452 DLNHAWEVLAEPIQTVMRRYGVP 474
L E+LA + + R G+P
Sbjct: 363 ALTP--EMLATDLALYLVRKGMP 383
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 35/208 (16%)
Query: 224 KLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE----IM 279
+LIK L E A ++ + TH Q A P + + A+ L R+ + + +V+ ++
Sbjct: 137 QLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKRRINVL 196
Query: 280 GKFAGAVGNYNAHLSAYP-DVNWPQITE--DFVKSLGLSFNPYVTQIETHDYMAK----- 331
+GA L+ P D++ + DF +S N + I D++ +
Sbjct: 197 PLGSGA-------LAGNPLDIDREMLRSELDFA---SISLNS-MDAISERDFVVEFLSVA 245
Query: 332 --LFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNL 389
L + LI + +G+++L + A GSS MP K NP E
Sbjct: 246 TLLMIHLSKMAEDLIIYSTSEFGFLTL------SDAFSTGSSLMPQKKNPDSLELIRSKA 299
Query: 390 GKANEDLSFLSM---KLPISRWQRDLTD 414
G+ L+ + M LP S + +DL +
Sbjct: 300 GRVFGRLASILMVLKGLP-STYNKDLQE 326
>pdb|4EI0|A Chain A, Crystal Structure Of A Hypothetical Protein (Parmer_03218)
From Parabacteroides Merdae Atcc 43184 At 2.00 A
Resolution
pdb|4EI0|B Chain B, Crystal Structure Of A Hypothetical Protein (Parmer_03218)
From Parabacteroides Merdae Atcc 43184 At 2.00 A
Resolution
Length = 312
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 249 PASPTTLGKEIS-VFAIRLGRERQEISQVEIMGKFAGAVGNY 289
P +P +G EI +A + E ++S +++ AGA G Y
Sbjct: 26 PVAPNIVGNEIEFAYAXAIPNELGKLSSAQVVSSIAGATGTY 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,590,580
Number of Sequences: 62578
Number of extensions: 637325
Number of successful extensions: 1977
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1853
Number of HSP's gapped (non-prelim): 93
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)