Query 009005
Match_columns 546
No_of_seqs 229 out of 1980
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 19:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02848 adenylosuccinate lyas 100.0 1.5E-91 3.4E-96 753.6 42.1 451 75-529 3-457 (458)
2 COG0015 PurB Adenylosuccinate 100.0 3E-90 6.6E-95 729.7 40.1 423 87-532 1-437 (438)
3 PRK09285 adenylosuccinate lyas 100.0 5.6E-90 1.2E-94 742.4 41.2 451 76-530 1-455 (456)
4 cd01598 PurB PurB_like adenylo 100.0 3.6E-84 7.7E-89 690.7 40.5 419 98-522 1-425 (425)
5 PRK07492 adenylosuccinate lyas 100.0 1.8E-83 3.9E-88 689.3 41.4 419 87-532 1-433 (435)
6 PRK07380 adenylosuccinate lyas 100.0 3.9E-83 8.4E-88 686.0 39.8 413 87-530 2-429 (431)
7 PRK08470 adenylosuccinate lyas 100.0 4.2E-83 9.1E-88 688.6 39.1 412 90-531 4-441 (442)
8 PRK08540 adenylosuccinate lyas 100.0 2.9E-82 6.3E-87 684.6 41.3 431 82-535 1-445 (449)
9 cd03302 Adenylsuccinate_lyase_ 100.0 2.7E-82 6E-87 681.6 37.9 413 87-522 1-436 (436)
10 PRK06390 adenylosuccinate lyas 100.0 1.1E-81 2.4E-86 679.8 40.8 430 82-535 1-443 (451)
11 PRK09053 3-carboxy-cis,cis-muc 100.0 1.1E-79 2.3E-84 664.9 40.0 431 83-534 3-447 (452)
12 TIGR00928 purB adenylosuccinat 100.0 1.5E-79 3.3E-84 661.3 39.4 420 87-530 1-435 (435)
13 cd01597 pCLME prokaryotic 3-ca 100.0 7.8E-78 1.7E-82 648.6 41.9 420 87-532 2-436 (437)
14 cd01360 Adenylsuccinate_lyase_ 100.0 1.8E-76 3.8E-81 628.3 37.0 365 90-482 1-374 (387)
15 cd01595 Adenylsuccinate_lyase_ 100.0 4.8E-76 1E-80 624.5 37.7 366 98-482 1-375 (381)
16 PRK06705 argininosuccinate lya 100.0 8E-71 1.7E-75 600.5 36.8 419 85-534 10-467 (502)
17 COG0165 ArgH Argininosuccinate 100.0 2E-70 4.4E-75 577.4 37.2 416 83-535 2-454 (459)
18 PRK04833 argininosuccinate lya 100.0 1.4E-70 3.1E-75 593.3 36.5 418 86-535 3-453 (455)
19 cd01359 Argininosuccinate_lyas 100.0 3.8E-70 8.3E-75 588.7 34.6 404 103-535 4-432 (435)
20 TIGR00838 argH argininosuccina 100.0 2E-69 4.3E-74 585.6 38.4 420 86-538 1-454 (455)
21 PLN02646 argininosuccinate lya 100.0 6.9E-69 1.5E-73 581.7 37.5 416 85-536 17-468 (474)
22 PRK12308 bifunctional arginino 100.0 2.4E-69 5.2E-74 604.5 33.2 422 86-534 3-452 (614)
23 PRK05975 3-carboxy-cis,cis-muc 100.0 5.2E-68 1.1E-72 555.8 33.9 332 87-444 11-347 (351)
24 TIGR02426 protocat_pcaB 3-carb 100.0 3.6E-67 7.9E-72 547.7 34.0 331 87-442 2-338 (338)
25 PRK00485 fumC fumarate hydrata 100.0 3.4E-67 7.4E-72 568.2 34.0 394 104-522 41-462 (464)
26 PRK02186 argininosuccinate lya 100.0 7.6E-67 1.7E-71 606.1 37.7 419 87-534 409-852 (887)
27 PRK00855 argininosuccinate lya 100.0 2.5E-66 5.4E-71 561.7 37.2 402 103-535 28-455 (459)
28 TIGR00979 fumC_II fumarate hyd 100.0 1.3E-65 2.7E-70 554.1 33.1 384 105-521 39-458 (458)
29 PRK12273 aspA aspartate ammoni 100.0 2.1E-65 4.6E-70 554.6 34.2 385 105-523 45-465 (472)
30 PRK13353 aspartate ammonia-lya 100.0 7.1E-65 1.5E-69 550.6 34.4 386 104-522 42-462 (473)
31 cd01357 Aspartase Aspartase. T 100.0 5.3E-64 1.1E-68 541.2 34.9 378 103-511 36-448 (450)
32 TIGR00839 aspA aspartate ammon 100.0 5.2E-64 1.1E-68 542.0 33.7 391 102-523 37-461 (468)
33 cd01362 Fumarase_classII Class 100.0 1.8E-63 3.8E-68 537.4 34.8 391 104-518 37-454 (455)
34 PLN00134 fumarate hydratase; P 100.0 3.1E-63 6.7E-68 535.6 35.1 389 105-522 34-454 (458)
35 PRK12425 fumarate hydratase; P 100.0 1.2E-62 2.5E-67 531.5 34.8 390 105-523 40-461 (464)
36 cd01334 Lyase_I Lyase class I 100.0 8.6E-63 1.9E-67 513.0 27.4 314 108-445 1-325 (325)
37 cd01596 Aspartase_like asparta 100.0 1.1E-61 2.5E-66 522.3 34.9 379 104-511 37-448 (450)
38 KOG1316 Argininosuccinate lyas 100.0 3.3E-61 7.1E-66 480.8 29.4 412 84-535 6-456 (464)
39 PRK06389 argininosuccinate lya 100.0 2.1E-60 4.6E-65 505.6 33.2 360 86-486 3-385 (434)
40 PRK14515 aspartate ammonia-lya 100.0 5.7E-60 1.2E-64 511.0 32.1 390 104-523 48-469 (479)
41 PF00206 Lyase_1: Lyase; Inte 100.0 3E-61 6.5E-66 498.7 16.0 288 89-389 1-307 (312)
42 KOG2700 Adenylosuccinate lyase 100.0 1.2E-53 2.6E-58 440.2 29.4 433 83-533 6-460 (481)
43 COG0114 FumC Fumarase [Energy 100.0 1.3E-46 2.9E-51 383.9 30.2 393 105-522 41-461 (462)
44 COG1027 AspA Aspartate ammonia 100.0 3.2E-44 6.9E-49 365.4 30.6 395 105-523 44-464 (471)
45 KOG1317 Fumarase [Energy produ 100.0 4.2E-37 9.1E-42 305.8 18.9 315 188-522 154-486 (487)
46 cd01594 Lyase_I_like Lyase cla 100.0 4.7E-34 1E-38 282.1 25.0 191 171-419 16-213 (231)
47 PRK08937 adenylosuccinate lyas 100.0 2.8E-28 6.1E-33 239.8 18.3 181 335-521 22-216 (216)
48 PF08328 ASL_C: Adenylosuccina 99.9 1.7E-21 3.6E-26 169.4 8.8 115 406-520 1-115 (115)
49 KOG2700 Adenylosuccinate lyase 99.8 5E-19 1.1E-23 184.1 10.2 421 67-536 57-479 (481)
50 PF10397 ADSL_C: Adenylosuccin 98.7 2.6E-08 5.6E-13 83.3 5.8 72 458-531 3-81 (81)
51 PF10415 FumaraseC_C: Fumarase 95.3 0.007 1.5E-07 47.0 0.9 50 466-521 3-54 (55)
52 PF14698 ASL_C2: Argininosucci 95.1 0.0096 2.1E-07 48.5 1.2 38 458-496 2-41 (70)
No 1
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=1.5e-91 Score=753.59 Aligned_cols=451 Identities=78% Similarity=1.231 Sum_probs=409.0
Q ss_pred ccccccccccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCC---CcccHHHHHHHHHHHhcCCc
Q 009005 75 EFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEV---PSFSEEAKSYLQGLIDGFNM 151 (546)
Q Consensus 75 ~~~~~~~~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiI---p~~aa~ai~~l~~~~~~~~~ 151 (546)
+|+++++.++||+++||++++++|+.+|||++++++|++||+||+++|+ +.|+| |+.+.++++.|.+.+..|+.
T Consensus 3 ~~~~~~~~~~~pl~~ry~~~~~e~~~ifSd~a~~~~~l~vE~ala~a~a---~~g~i~~~P~i~~~aa~~i~~~~~~~~~ 79 (458)
T PLN02848 3 DLELSNLTALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLS---QIPEVTEVPPFSDEANSFLEGIIAGFSV 79 (458)
T ss_pred CCCccccccCCCchhhhcCCcHHHHHHcCHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCHHHHHHHHHHHHhcCH
Confidence 4778899999999999998778999999999999999999999999999 89998 87444444444444335655
Q ss_pred ccHHHHHHHHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 009005 152 DDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV-MFPVMDKLIKALC 230 (546)
Q Consensus 152 ~d~~~i~~~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~-l~~~L~~l~~~L~ 230 (546)
.|+++++++++.++|||+++|++|+++++..+++.+.++|||+|+|||||+||+++|++|+++. . +.+.|..++++|.
T Consensus 80 ~d~~~~~~~e~~t~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~-~~l~~~L~~l~~aL~ 158 (458)
T PLN02848 80 DDALEVKKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVN-SVVLPTMDEIIKAIS 158 (458)
T ss_pred hhHHHHHHHHHHhCCCcHHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999742111236799999999999999999999999998 5 9999999999999
Q ss_pred HHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHHHHHHH
Q 009005 231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK 310 (546)
Q Consensus 231 ~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~ 310 (546)
++|++|++|+|+||||+|||+|||||+|+++|+++|.|+++||.++.+.|+++|||||+++++..||++||+.+.+++++
T Consensus 159 ~lA~~~~dt~m~GRTH~Q~A~PiTfG~~~a~w~~~L~r~~~rL~~~~l~g~~~GAvGt~aa~~~~~~~~d~~~v~~~la~ 238 (458)
T PLN02848 159 SLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVT 238 (458)
T ss_pred HHHHHhcCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHhccEeecccchhhhhhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997779999999999998767888999999999999
Q ss_pred HcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchh
Q 009005 311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390 (546)
Q Consensus 311 ~LGl~~~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~ 390 (546)
.|||..++..+|+.+||+++|++++++.++++|.|||+|+|.++++|++.+...++++|||||||||||+.+|+++|+++
T Consensus 239 ~LGL~~~~~~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~e~ge~~e~~~~~~~GSS~MP~KrNPv~~E~i~~~a~ 318 (458)
T PLN02848 239 SLGLTFNPYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVNPIDFENSEGNLG 318 (458)
T ss_pred HhCCCCCCchhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccCCCCCCcCCCCCCcCcHHHHHHHHHHH
Confidence 99999866655789999999999999999999999999999999999998767778999999999999999999999888
Q ss_pred hhhhHHHHHHhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHh
Q 009005 391 KANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRR 470 (546)
Q Consensus 391 la~~~~~~~~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~ 470 (546)
+++.....+..+++.++||||+++|.++|.+++++..+..+++.+..++++|+||++||++|++.+++++||.+++.|+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~eRD~~~s~~e~~~~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~~~~~~sE~~~~~l~~ 398 (458)
T PLN02848 319 LANAELSHLSMKLPISRMQRDLTDSTVLRNMGVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQTWEVLAEPIQTVMRR 398 (458)
T ss_pred HHHHHHHHHHhcCcchhhccccchhhhhccHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHccchhHHHHHHHHHHH
Confidence 77766666667767767899999999999889999999999999999999999999999999999999999999999977
Q ss_pred cCchhHHHHHHHHhhccccccccHHHHHhhCCCCHHHHHhccccCcCcccCchHHHHHH
Q 009005 471 YGVPEPYEKLKELTRGKVVTKESIREFIIGLELPEEAKANLLNLTPHNYVGAAAELARN 529 (546)
Q Consensus 471 ~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~l~~~~~~~l~~ldP~~~~G~a~~~v~~ 529 (546)
+|+++||++|+++++....+++++++|++.+.++++..++|+.|.|.+|+|.|++++++
T Consensus 399 ~G~~~A~e~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~g~~~~~~~~ 457 (458)
T PLN02848 399 YGVPEPYEKLKELTRGRAVTKESMREFIEGLELPEEAKDQLLKLTPHTYIGAAAALALN 457 (458)
T ss_pred hChHHHHHHHHHHHHHccCCHHHHHHHHHHcCCCHHHHHHHHhCCchhhhchHHHHHhh
Confidence 99999999999999988888889999999988999998888789999999999999874
No 2
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-90 Score=729.65 Aligned_cols=423 Identities=33% Similarity=0.436 Sum_probs=376.8
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
+++||++ ++|+.+|||++++++|++||+||++|++ ++|+||+++++.|...+ . +...|.+++++++++++|
T Consensus 1 ~~~RY~~--~em~~ifS~~~~~~~~l~vE~ala~A~a---elG~Ip~~a~~~I~~~~---~-~~~~d~~~i~eie~~t~H 71 (438)
T COG0015 1 LDGRYSS--PEMRAIFSEEAKLRAWLKVEAALARAQA---ELGVIPAEAAAEIDAAA---A-FAEFDLERIKEIEAETGH 71 (438)
T ss_pred CCcccCc--HHHHHHcCHHHHHHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHh---c-ccccCHHHHHHHHHHhCC
Confidence 5889996 7999999999999999999999999999 99999987766654433 2 445689999999999999
Q ss_pred chhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Q 009005 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (546)
Q Consensus 167 dv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH 246 (546)
||+++++.|+++|++ ++++|||+|+|||||+||+++|++|+++. +|.+.|.++++.|.++|.+|++|||+||||
T Consensus 72 dV~a~v~~l~e~~~~-----~~~~~VH~GaTS~DI~Dta~~L~lk~a~~-ii~~~l~~l~~~L~~~A~~~k~t~m~GRTH 145 (438)
T COG0015 72 DVKALVRALAEKVGE-----EASEYVHFGATSQDIIDTALALQLKEALD-LILPDLKRLIEALAELALEHKDTPMLGRTH 145 (438)
T ss_pred CcHHHHHHHHHhcCc-----ccccceecccchHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCeeccccc
Confidence 999999999999984 37899999999999999999999999999 699999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccc
Q 009005 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (546)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~ 323 (546)
||||+|||||+++|+|+++|.|+++||.++. ++|+++||+||+++++. .+ ..+++++++.|||..+|+++|+
T Consensus 146 gq~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~~----~~-~~ve~~v~e~LGL~~~p~stq~ 220 (438)
T COG0015 146 GQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALGD----LG-AEVEERVAEKLGLKPAPISTQV 220 (438)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhHhhcCc----hh-HHHHHHHHHHcCCCCCCCCccc
Confidence 9999999999999999999999999999885 78999999999988643 33 4689999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh
Q 009005 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (546)
Q Consensus 324 ~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~ 401 (546)
.+||+++|++++|++++++|.|||+|||+|+. .+++++++.+|++|||+|||||||+.||++.|++.+++.....+..
T Consensus 221 ~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e 300 (438)
T COG0015 221 SPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLE 300 (438)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 5555599999999999999999999999999977777766666666
Q ss_pred hcchhhhcccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHhcC--chhHH
Q 009005 402 KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRRYG--VPEPY 477 (546)
Q Consensus 402 ~l~~~~~erDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~~G--~~~Ah 477 (546)
++ .++||||+++|+++| .+++++.++..+|..+.+++++|.||+++|++|++.+++ +++|.++..|.+.| +++||
T Consensus 301 ~~-~~whERdlt~ssver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~~~l~~~g~~Re~a~ 379 (438)
T COG0015 301 NL-VLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAH 379 (438)
T ss_pred Hh-HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhccchhhhHHHHHHHHhcCCCHHHHH
Confidence 67 567899999999999 788999999999999999999999999999999999997 68898888885544 56999
Q ss_pred HHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHH
Q 009005 478 EKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDV 532 (546)
Q Consensus 478 ~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~ 532 (546)
++|++.++.+..+.+.+.+.+... .++++++++ +|||.+|+|.++++++++++
T Consensus 380 elvr~~a~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~--~~dp~~y~G~a~~i~~r~~~ 437 (438)
T COG0015 380 ELVREKAMKAWEQGKEFLELLLADERVTKYLSEEELLE--LLDPANYLGRADEIVERVVK 437 (438)
T ss_pred HHHHHHHHHHHHhccchHHHhccchhhhccCcHHHHHH--cCCHHHHhhHHHHHHHHHhc
Confidence 999999987766666665443221 367777776 49999999999999998764
No 3
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=5.6e-90 Score=742.44 Aligned_cols=451 Identities=66% Similarity=1.057 Sum_probs=400.1
Q ss_pred cccccccccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCC---CCcccHHHHHHHHHHHhcCCcc
Q 009005 76 FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE---VPSFSEEAKSYLQGLIDGFNMD 152 (546)
Q Consensus 76 ~~~~~~~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~Gi---Ip~~aa~ai~~l~~~~~~~~~~ 152 (546)
|+++.+..+|||++||++.+++|+.+|||++++++|++||+||+++|+ +.|+ ||+.++++++.|.+....+...
T Consensus 1 ~~~~~~~~~~p~~~ry~~~~~e~~~~~s~~~~~~~~l~vE~A~a~a~a---~~g~~~~ip~~~~~~~~~i~~~~~~~~~~ 77 (456)
T PRK09285 1 MELSALTALSPLDGRYASKTAALRPIFSEFGLIRYRVQVEVEWLIALA---AHPGIPEVPPFSAEANAFLRAIVENFSEE 77 (456)
T ss_pred CCCccccCCCCCccccCCCCHHHHHHhCHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCHHHHHHHHHHHHhhCcc
Confidence 345678999999999998668999999999999999999999999999 8888 9999999955554443345444
Q ss_pred cHHHHHHHHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 009005 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV-MFPVMDKLIKALCE 231 (546)
Q Consensus 153 d~~~i~~~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~-l~~~L~~l~~~L~~ 231 (546)
|++++.+.+..++|||+++|++|++++|..++++++++|||+|+|||||+||+++|++|+++. . +.+.|..++++|.+
T Consensus 78 d~~~i~~~e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~-~~l~~~L~~l~~~L~~ 156 (456)
T PRK09285 78 DAARIKEIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNLSHALMLKEARE-EVLLPALRELIDALKE 156 (456)
T ss_pred cHHHHHHHHHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999742212247899999999999999999999999998 6 89999999999999
Q ss_pred HHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHHHHHHHH
Q 009005 232 IAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS 311 (546)
Q Consensus 232 lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~ 311 (546)
+|++|++|+|+||||+|||+|||||+||++|+++|.|+++||.++.++|+++||+||++++...+|+.||+.+.+.+++.
T Consensus 157 lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~g~~~GAvGt~~a~~~~~~~~~~~~v~~~~~~~ 236 (456)
T PRK09285 157 LAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEAVEILGKINGAVGNYNAHLAAYPEVDWHAFSREFVES 236 (456)
T ss_pred HHHHcCCCeeeceecCCCCeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHhhhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986553334667788899999999
Q ss_pred cCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhh
Q 009005 312 LGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGK 391 (546)
Q Consensus 312 LGl~~~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~l 391 (546)
|||..|++++|+.+||++++++++++.++++|+|||+|+++|++.|++.+.++.+++|||||||||||+.+|++++++.+
T Consensus 237 LGL~~~~~~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll~~~~e~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~ 316 (456)
T PRK09285 237 LGLTWNPYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGYISLGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGL 316 (456)
T ss_pred hCCCCCCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhccCCCCCCCCCCCCCCcCchHHHHHHHHHHH
Confidence 99999998877899999999999999999999999999999999888877788899999999999999999999998877
Q ss_pred hhhHHHHHHhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhc
Q 009005 392 ANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRY 471 (546)
Q Consensus 392 a~~~~~~~~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~ 471 (546)
++...+.+...++..+||||+++|.++|.+++++..+..+++.+..++++|+||++||++|++.+++++||.++..|+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~eRD~~~~~~e~~~~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl~~~~~~~sE~~~~~l~~~ 396 (456)
T PRK09285 317 ANALLEHLAAKLPISRWQRDLTDSTVLRNLGVAFGYSLIAYDSLLKGLGKLEVNEARLAEDLDANWEVLAEPIQTVMRRY 396 (456)
T ss_pred HHHHHHHHHhhccHHhhCCcCchhhhhcchHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCcchHHHHHHHHHHh
Confidence 77666666666655668999999999998899999999999999999999999999999999999999999999999779
Q ss_pred CchhHHHHHHHHhhccccccccHHHHHhhCCCCHHHHHhccccCcCcccCchHHHHHHH
Q 009005 472 GVPEPYEKLKELTRGKVVTKESIREFIIGLELPEEAKANLLNLTPHNYVGAAAELARNV 530 (546)
Q Consensus 472 G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~l~~~~~~~l~~ldP~~~~G~a~~~v~~~ 530 (546)
|+++||++|+++++.+..++.+++++++.+..++...++|..|||++|+|.++++++++
T Consensus 397 gr~~A~~~v~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~l~~~~p~~ylg~a~~~~~~~ 455 (456)
T PRK09285 397 GIENPYEKLKELTRGKRITAEALREFIDGLDLPEEAKARLKALTPANYIGLAAELADEI 455 (456)
T ss_pred ChHhHHHHHHHHHHHHHhccCCHHHHHHHhcCCHhHHHHHHcCCHHHHHhhHHHHHHhh
Confidence 99999999999999998899999999544322222112233599999999999999875
No 4
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=3.6e-84 Score=690.74 Aligned_cols=419 Identities=63% Similarity=1.038 Sum_probs=376.8
Q ss_pred hHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCc------ccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCCchhhH
Q 009005 98 LAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPS------FSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAV 171 (546)
Q Consensus 98 m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~------~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~hdv~a~ 171 (546)
++++|||++++++|++||+||+++|+ ++|+||+ +++++|.+ .+..++..|++++++.++.++|||+++
T Consensus 1 ~~~~~s~~~~~~~~l~vE~ala~a~a---~~g~Ip~~~~~~~~aa~~i~~---~~~~~~~~d~~~~~~~~~~~~hdv~al 74 (425)
T cd01598 1 LRPYFSEYALIKYRVQVEVEWLIALS---NLEEIPEVPPLTKEELKFLRA---IIENFSEEDALRIKEIEATTNHDVKAV 74 (425)
T ss_pred CHHHhCHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCHHHHHHHHH---HHhhcCccCHHHHHHHHHHHCCCcHHH
Confidence 46899999999999999999999999 9999998 66666644 334444348999999999999999999
Q ss_pred HHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCc
Q 009005 172 EYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPAS 251 (546)
Q Consensus 172 e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~ 251 (546)
|++|++++|+.+.+.++++|||+|+|||||+||+++|++|+++..++.+.|.+++++|.++|++|++|+|+||||+|||+
T Consensus 75 ~~~l~~~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~Q~A~ 154 (425)
T cd01598 75 EYFLKEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPAT 154 (425)
T ss_pred HHHHHHHhcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccCe
Confidence 99999999852101147899999999999999999999999994347899999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccccchhHHHH
Q 009005 252 PTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAK 331 (546)
Q Consensus 252 PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~~~rD~~~e 331 (546)
|||||||+++|+++|.|+++||.++.++|++||++||++++...+|+.+|..+++++++.|||..++..+++.+||+++|
T Consensus 155 P~TfG~~~a~w~~~L~r~~~RL~~~~~~g~~gGavGt~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~~~~~v~~rD~~~e 234 (425)
T cd01598 155 PTTLGKELAVFVYRLERQYKQLKQIEILGKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIEPHDYIAE 234 (425)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHhheeeCchhhhhhhhhccCcccHHHHHHHHHHHhCcCCCCcccchhccHHHHH
Confidence 99999999999999999999999999999999999998877554454556789999999999999888766789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhcchhhhccc
Q 009005 332 LFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRD 411 (546)
Q Consensus 332 ~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l~~~~~erD 411 (546)
++++++.++++|+|||+|+++|++.|++.+.++.+++|||||||||||+.+|++++.+.+++...+.+...++.++||||
T Consensus 235 ~~~~La~la~~L~kia~Di~ll~s~ge~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~a~~~~~~~~~~~~~~~~eRD 314 (425)
T cd01598 235 LFDALARINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNHLSAKLPISRLQRD 314 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcceeecCCCCCCCcCCCCCCcCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 99999999999999999999999889888878889999999999999999999999888777777777777755568999
Q ss_pred CCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCchhHHHHHHHHhhcccccc
Q 009005 412 LTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTK 491 (546)
Q Consensus 412 l~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~~~Ah~iv~~~~~~a~~~~ 491 (546)
+++|..+|.+++++..+..+++.+..++++|+||++||++|++.+++++||.+++.|..+|+.+||++|++++++.....
T Consensus 315 ~~~~~~e~~~~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~i~sE~~~~~l~~~gr~~Ah~~V~~~~~~~~~~~ 394 (425)
T cd01598 315 LTDSTVLRNIGVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWEVLAEPIQTVMRRYGIPNPYEKLKDLTRGKRIDK 394 (425)
T ss_pred ccchhhhccHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCHHHHHHHHHHHhcChHhHHHHHHHHhCCCCCCH
Confidence 99999999888999999999999999999999999999999999999999999999977999999999999999877777
Q ss_pred ccHHHHHhhCCCCHHHHHhccccCcCcccCc
Q 009005 492 ESIREFIIGLELPEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 492 ~~l~e~~~~~~l~~~~~~~l~~ldP~~~~G~ 522 (546)
.++.+|++.+..+++..++|..|.|.+|+|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (425)
T cd01598 395 ETLKEFIDSLDIPEEAKAELLALTPANYIGL 425 (425)
T ss_pred HHHHHHHHhCCCCHHHHHHHHhCCccccCCc
Confidence 7888899988899988888778999999984
No 5
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.8e-83 Score=689.32 Aligned_cols=419 Identities=21% Similarity=0.224 Sum_probs=367.3
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
++.||+ +++|+++|||+++++.|++||.|++++|+ ++|+||++++++|.+.+ .... .|++++++.++.++|
T Consensus 1 ~~~~y~--~~~~~~i~s~~~~~~~~l~vE~ala~a~~---~~g~ip~~aa~~i~~~~---~~~~-~d~~~~~~~~~~~~h 71 (435)
T PRK07492 1 MIPRYS--RPEMVAIWEPETKFRIWFEIEAHACEAQA---ELGVIPKEAAETIWEKG---KDAE-FDVARIDEIEAVTKH 71 (435)
T ss_pred CCcccC--cHHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHhC---cccC-CCHHHHHHHHHHhCC
Confidence 367899 57999999999999999999999999999 99999987777775422 1212 478999999999999
Q ss_pred chhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Q 009005 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (546)
Q Consensus 167 dv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH 246 (546)
||+++|++|+++||+ .++|||+|+|||||+||+++|++|+++.. +.+.|.+++++|.++|++|++|+|+||||
T Consensus 72 ~v~a~~~~L~~~~g~------~~~~vH~G~Ts~Di~dTa~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH 144 (435)
T PRK07492 72 DVIAFLTHLAEFVGP------DARFVHQGMTSSDVLDTCLNVQLVRAADL-LLADLDRVLAALKKRAFEHKDTPTIGRSH 144 (435)
T ss_pred ChHHHHHHHHHHhhH------hhhhhcCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCEEeeccC
Confidence 999999999999975 58999999999999999999999999995 99999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccc
Q 009005 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (546)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~ 323 (546)
+|||+|||||||+++|+++|.|+++||.++. ..+++|||+||+.+ +| +.++++++++|||+.+++++|+
T Consensus 145 ~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~-------~~-~~~~~~~a~~LGl~~~~~~~~v 216 (435)
T PRK07492 145 GIHAEPTTFGLKLARFYAEFARNRERLVAAREEIATCAISGAVGTFAN-------ID-PRVEEHVAKKLGLKPEPVSTQV 216 (435)
T ss_pred CccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCcc-------CC-hHHHHHHHHHhCCCCCCccccc
Confidence 9999999999999999999999999999986 68889999999643 33 3578999999999998888788
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh
Q 009005 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (546)
Q Consensus 324 ~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~ 401 (546)
.+||++++++++++.++++|+|||+|+++|++ +|++.+++..+++|||||||||||+.+|+++|++..+......+..
T Consensus 217 ~~RD~~~e~~~~la~~~~~L~ria~Di~~l~~~e~~El~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~~~~~~~~~ 296 (435)
T PRK07492 217 IPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVVPAME 296 (435)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998874 7888877778899999999999999999999965544433333344
Q ss_pred hcchhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHh--cCchhHH
Q 009005 402 KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRR--YGVPEPY 477 (546)
Q Consensus 402 ~l~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~--~G~~~Ah 477 (546)
+++. +||||+++|..+|. +++++..+..++..+..++++|+||++||++|++.+++ ++||.+++.|.+ +|+.+||
T Consensus 297 ~~~~-~~eRD~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~r~~Ah 375 (435)
T PRK07492 297 NVAL-WHERDISHSSVERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSREDAY 375 (435)
T ss_pred hcch-hhccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCCHHHHH
Confidence 4555 48999999988875 45778888889999999999999999999999998776 689999999954 4456999
Q ss_pred HHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHH
Q 009005 478 EKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDV 532 (546)
Q Consensus 478 ~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~ 532 (546)
++|+++++.+..++.++.+.+... .+++++++++ +||.+|+|.++++++++++
T Consensus 376 ~~V~~~~~~a~~~~~~l~e~l~~~~~~~~~l~~~el~~~--~dp~~ylg~~~~~~~~~~~ 433 (435)
T PRK07492 376 RLVQRNAMKVWEQGGDFLEELKADPEVRAALSEEEIEEL--FDLGYHTKHVDTIFKRVFG 433 (435)
T ss_pred HHHHHHHHHHHHhCCCHHHHHhCCHHhHhcCCHHHHHHH--hCHHHHhcchHHHHHHHhh
Confidence 999999998888888999987643 3677777774 9999999999999999864
No 6
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=3.9e-83 Score=685.99 Aligned_cols=413 Identities=20% Similarity=0.256 Sum_probs=359.4
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
++ ||+ +++|+.+|||++++++|++||+||+++++ ++|+||++++++|.+ .. +| |+++++++++.++|
T Consensus 2 ~~-~y~--~~~~~~~fs~~~~~~~~l~vE~ala~a~~---~~g~ip~~aa~~i~~---~~-~~---d~~~i~~~~~~~~h 68 (431)
T PRK07380 2 IE-RYT--LPEMGNIWTDTAKFQTWLDVEIAVCEAQA---ELGKIPQEAVEEIKA---KA-NF---DPQRILEIEAEVRH 68 (431)
T ss_pred cc-ccC--cHHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHh---cc-CC---CHHHHHHHHHHhCC
Confidence 34 898 57999999999999999999999999999 999999877777643 22 33 78999999999999
Q ss_pred chhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Q 009005 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (546)
Q Consensus 167 dv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH 246 (546)
||+++++.|+++||+ +++|||+|+|||||+||+++|++|+++.. +.+.|.+++++|.++|.+|++|+|+||||
T Consensus 69 ~v~a~v~~l~~~~g~------~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~-l~~~l~~l~~~L~~lA~~~~~t~m~grTH 141 (431)
T PRK07380 69 DVIAFLTNVNEYVGD------AGRYIHLGMTSSDVLDTGLALQLVASLDL-LLEELEDLIQAIRYQAREHRNTVMIGRSH 141 (431)
T ss_pred ChHHHHHHHHHHHHH------hhccccCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCeeechhc
Confidence 999999999999974 79999999999999999999999999994 99999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccc
Q 009005 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (546)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~ 323 (546)
+|||+|||||||+++|+++|.|+++||.++. +.++++||+||+++. | +++.+.+++.|||+.++.++|+
T Consensus 142 ~Q~A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~~l~GAvGt~~~~-------~-~~~~~~~a~~LGl~~~~~~~~v 213 (431)
T PRK07380 142 GIHAEPITFGFKLAGWLAETLRNRERLVRLREDIAVGQISGAVGTYANT-------D-PRVEAITCQKLGLKPDTASTQV 213 (431)
T ss_pred CccceechHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhcCcccC-------C-hhHHHHHHHHcCCCCCCCCCCc
Confidence 9999999999999999999999999999986 678899999996543 3 3577899999999987766688
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh
Q 009005 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYISL--AYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (546)
Q Consensus 324 ~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~--G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~ 401 (546)
.+||+++|++++++.++++|+|||+|+++|+++ +++.+++..+++|||||||||||+.+|++++.+..+......+..
T Consensus 214 ~~rd~~~e~~~~la~~a~~L~kia~Di~~l~~~~~~el~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~g~~~~~~~ 293 (431)
T PRK07380 214 ISRDRHAEYVQTLALVGASLERFATEIRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYAVAALE 293 (431)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeecccCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875 555555667889999999999999999999855543333333334
Q ss_pred hcchhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHh--cCchhHH
Q 009005 402 KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRR--YGVPEPY 477 (546)
Q Consensus 402 ~l~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~--~G~~~Ah 477 (546)
+++. +||||+++|..+|. +++++..+..++..+..++++|+||++||++|++.+.+ ++||.++..|.+ +|+.+||
T Consensus 294 ~~~~-~~eRD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~r~~Ah 372 (431)
T PRK07380 294 NVAL-WHERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAY 372 (431)
T ss_pred hchh-hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCCHHHHH
Confidence 4554 47999999988774 56788888899999999999999999999999997665 679999988854 4556999
Q ss_pred HHHHHHhhcccc-ccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHH
Q 009005 478 EKLKELTRGKVV-TKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNV 530 (546)
Q Consensus 478 ~iv~~~~~~a~~-~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~ 530 (546)
++|+++++.+.. ++.++.+.+.+. .+++++++++ +||.+|+|.++++++++
T Consensus 373 ~~V~~~~~~a~~~~~~~l~e~l~~~~~~~~~l~~~~l~~~--~dp~~ylg~~~~~~~~~ 429 (431)
T PRK07380 373 RLVQKNAHTAWNTEGGNFRANLEADPEVTQLLSAAELADC--FDPQLHLKNLDVIYQRL 429 (431)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHcChHhhhcCCHHHHHHh--hCHHHHhcchHHHHHHh
Confidence 999999998888 888999988653 3677777774 99999999999999875
No 7
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=4.2e-83 Score=688.57 Aligned_cols=412 Identities=19% Similarity=0.232 Sum_probs=361.0
Q ss_pred cCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCCchh
Q 009005 90 RYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVK 169 (546)
Q Consensus 90 ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~hdv~ 169 (546)
||+ +++|+++|||++++++|++||+||++||+ ++|+||++++++|. +.+ . .|++++.+.+..++|||+
T Consensus 4 ~y~--~~~~~~i~s~~~~~~~~l~ve~A~a~al~---~~G~Ip~~~a~~I~---~~~---~-~d~~~~~~~~~~~~~dv~ 71 (442)
T PRK08470 4 RYA--REEMKKKWTMQAKYDAWLEVEKAAVKAWN---KLGLIPDSDCEKIC---KNA---K-FDIARIDEIEKTTKHDLI 71 (442)
T ss_pred ccC--cHHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHH---Hhc---c-cchHHHHHHHHccCCChH
Confidence 898 57999999999999999999999999999 99999987766653 222 1 257778888889999999
Q ss_pred hHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccC
Q 009005 170 AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (546)
Q Consensus 170 a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~ 249 (546)
+++++|++++|+ .++|||+|+|||||+||+++|++|+++.. +.+.|.+++++|.++|++|++|||+||||+||
T Consensus 72 ~~v~~L~e~~g~------~~~~vH~G~TsnDi~dTa~~L~lr~~l~~-l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~ 144 (442)
T PRK08470 72 AFLTSVSESLGE------ESRFVHYGMTSSDCIDTAVALQMRDSLKL-IIEDVKNLMEAIKKRALEHKDTLMVGRSHGIH 144 (442)
T ss_pred HHHHHHHHHccc------cccceecCCChhchHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCeeecccCCCc
Confidence 999999999975 68999999999999999999999999994 99999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccccch
Q 009005 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETH 326 (546)
Q Consensus 250 A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~~~r 326 (546)
|+|||||||+++|+++|.|+++||.++. +++++|||+||+++. | ..++++++++|||+.+++.+|+.+|
T Consensus 145 A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~~lgGAvGt~a~~----~----~~v~~~~a~~LGl~~~~~~~~v~~R 216 (442)
T PRK08470 145 GEPITFGLVLAIWYDEIKRHLKALEHTMEVISVGKISGAMGNFAHA----P----LELEELVCEELGLKPAPVSNQVIQR 216 (442)
T ss_pred CeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhcccccC----C----hHHHHHHHHHcCCCCCCCCCCccCc
Confidence 9999999999999999999999999986 788999999998654 2 2478999999999987777688999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhcc
Q 009005 327 DYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLP 404 (546)
Q Consensus 327 D~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l~ 404 (546)
|+++|++++++.++++|+|||+|+++|++ +|++.+++..+++|||||||||||+.+|+++|++..++.....+..+++
T Consensus 217 D~~~e~~~~La~~a~~L~ria~Di~~l~~~E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~~~~ 296 (442)
T PRK08470 217 DRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATPALENVA 296 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999999999875 7788787778899999999999999999999966654444433445555
Q ss_pred hhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHhcC--chhHHHHH
Q 009005 405 ISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRRYG--VPEPYEKL 480 (546)
Q Consensus 405 ~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~~G--~~~Ah~iv 480 (546)
.. ||||+++|..+|. +++++..+..++..+..++++|+||++||++|++.+++ ++||.++..|.+.| +++||++|
T Consensus 297 ~~-~eRD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V 375 (442)
T PRK08470 297 LW-HERDISHSSVERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDAYKIV 375 (442)
T ss_pred Hh-hccCCchhHHHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 8999999998875 67899999999999999999999999999999998775 68999999995545 56999999
Q ss_pred HHHhhccccc---ccc---------HHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHH
Q 009005 481 KELTRGKVVT---KES---------IREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVD 531 (546)
Q Consensus 481 ~~~~~~a~~~---~~~---------l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~ 531 (546)
+++++.+..+ +.+ +.+.+... .+++++++.+ +||.+|+|.+++++++++
T Consensus 376 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~--~dp~~~~g~~~~~~~~~~ 441 (442)
T PRK08470 376 QRNAMKVWEDLQQGKAAINEKGESLFLQALLNDEDLRKSLSEEEIRAC--FDYSYYTKNVDAIFKRVF 441 (442)
T ss_pred HHHHHHHHHHhhcCCCccccccHHHHHHHHhcCHHhHhcCCHHHHHHH--hCHHHHHhhHHHHHHHHh
Confidence 9999877666 666 77766432 3677777774 999999999999999985
No 8
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=2.9e-82 Score=684.64 Aligned_cols=431 Identities=25% Similarity=0.323 Sum_probs=370.1
Q ss_pred cccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHH
Q 009005 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (546)
Q Consensus 82 ~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~ 161 (546)
|+++|+++||+ +++|+.+|||++++++|++||+||+++|+ +.|+||++++++|. +.+.. ...|.+.+.+.+
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~s~~~~~~~~l~ve~A~a~~l~---~~Giip~~~a~~I~---~~l~~-~~i~~~~~~~~~ 71 (449)
T PRK08540 1 MAIHPIDYRYG--TPEMKRVWSEENKLQKMLDVEAALARAEA---ELGLIPEEAAEEIN---RKAST-KYVKLERVKEIE 71 (449)
T ss_pred CCcCCcCcccC--CHHHHHHcChHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHH---Hhccc-ccCCHHHHHHHH
Confidence 68899999999 57999999999999999999999999999 89999976666653 22222 103567777777
Q ss_pred hhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 009005 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (546)
Q Consensus 162 ~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m 241 (546)
...+|||+++|++|++++|. ++++|||+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|++|+|
T Consensus 72 ~~~~~~v~~~e~~L~~~~~~-----~~~~~vH~g~S~nDi~~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~~~m 145 (449)
T PRK08540 72 AEIHHDIMAVVKALSEVCEG-----DAGEYVHFGATSNDIIDTATALQLKDSLEI-LEEKLKKLRGVLLKKAEEHKNTVC 145 (449)
T ss_pred HHhCCCcHHHHHHHHHHhhh-----hhhcceecCccHhhHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCch
Confidence 88999999999999999963 479999999999999999999999999995 999999999999999999999999
Q ss_pred cccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCC
Q 009005 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (546)
Q Consensus 242 ~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~ 318 (546)
+||||+||||||||||||++|+++|.|+++||.++. ..+++||||||++++ ++..+ .+.+++++.|||+.++
T Consensus 146 ~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGt~~a~----~~~~~-~i~~~~a~~LGl~~~~ 220 (449)
T PRK08540 146 IGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQMTGAVGTQAAF----GEKGI-EIQKRVMEILGLKPVL 220 (449)
T ss_pred hhhcCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHhhheccccccccchhhC----CCccH-HHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999985 678889999997665 33333 4778999999999987
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 319 ~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
.++++++||++++++++++.++++|+|||+|+++|++ +|++.++++.+++||||||||+||+.+|++++++..+....
T Consensus 221 ~~~~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s~~e~gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~ 300 (449)
T PRK08540 221 ISNQVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNV 300 (449)
T ss_pred CcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 7767899999999999999999999999999999875 88887666788999999999999999999999655433333
Q ss_pred HHHHhhcchhhhcccCCcchhHHhHH-hhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHh--cC
Q 009005 397 SFLSMKLPISRWQRDLTDSTVLRNMG-GGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRR--YG 472 (546)
Q Consensus 397 ~~~~~~l~~~~~erDl~~s~~~~~l~-~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~--~G 472 (546)
..+..+++. .|+||+++|.++|..+ +++..+..++..+..++++|+||++||++|++.+.+ +++|.+++.|.+ +|
T Consensus 301 ~~~~~~~~~-~~~rd~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~glg 379 (449)
T PRK08540 301 EPALLNNPL-WDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELAKRGMG 379 (449)
T ss_pred HHHHhcchh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcCHHHHHHHHHHHHHcCCC
Confidence 223344444 3799999998888644 577888888999999999999999999999987654 678888888843 67
Q ss_pred chhHHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHHHhh
Q 009005 473 VPEPYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDVAVN 535 (546)
Q Consensus 473 ~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~~~ 535 (546)
+.+||++|+++++.+..++.++++++.+. .+++++++++ +||.+|+|++++.+++++++++
T Consensus 380 ~~~Ah~~v~~l~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~--ldp~~~~g~a~~~v~~~~~~~~ 445 (449)
T PRK08540 380 RQEAHELVRQAAMKAHEEGRHLKEVLLEDEEVMKYLTEEELEEL--LDPETYIGTAPEIVENVIEKLK 445 (449)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhccCCHHHHHHH--cCHHHhcCchHHHHHHHHHHHH
Confidence 78999999999998777788888887543 3567777774 9999999999999999997764
No 9
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=2.7e-82 Score=681.57 Aligned_cols=413 Identities=18% Similarity=0.178 Sum_probs=361.4
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCC-CCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE-VPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTN 165 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~Gi-Ip~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~ 165 (546)
+||||+ +++|+++|||++++++|++||.|++++++ +.|+ ||++++++|...+ .. .|+++++++++.++
T Consensus 1 ~~~ry~--~~~~~~~fs~~~~~~~~l~~e~ala~a~~---~~g~~ip~~~a~~i~~~~---~~---~d~~~i~~~e~~~~ 69 (436)
T cd03302 1 LASRYA--SKEMVYIFSPRKKFSTWRKLWLWLAEAEK---ELGLDISDEQIEEMKANV---EN---IDFEIAAAEEKKLR 69 (436)
T ss_pred CCCCcC--CHHHHHHcChHHHHHHHHHHHHHHHHhhH---HhCCCCCHHHHHHHHHhh---hc---CCHHHHHHHHHHhC
Confidence 589999 46999999999999999999999999999 8999 9987777775432 22 37899999999999
Q ss_pred CchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Q 009005 166 HDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245 (546)
Q Consensus 166 hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRT 245 (546)
|||++++++|++++|+ +++|||+|+|||||+||+++|++|+++.. +.+.|.+++++|.++|.+|++|||+|||
T Consensus 70 hdv~a~~~~l~~~~~~------~~~~vH~G~TS~Di~dta~~L~lr~a~~~-l~~~L~~l~~~L~~~A~~~~dt~m~GrT 142 (436)
T cd03302 70 HDVMAHVHAFGLLCPA------AAGIIHLGATSCFVTDNTDLIQIRDALDL-ILPKLAAVIDRLAEFALEYKDLPTLGFT 142 (436)
T ss_pred cCchHHHHHHHHHhHh------ccCeeeeCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCeeeccc
Confidence 9999999999999974 79999999999999999999999999985 9999999999999999999999999999
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCC--hhhHHHHHHHHcCCCCC-CC
Q 009005 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVN--WPQITEDFVKSLGLSFN-PY 319 (546)
Q Consensus 246 H~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d--~~~v~~~la~~LGl~~~-~~ 319 (546)
|+|||+||||||||++|+++|.|+++||.++. ..++++|++||+++++..+|+.. |+.+++++++.|||..+ +.
T Consensus 143 H~Q~A~P~TfG~~~a~~~~~L~r~~~RL~~~~~~~~~~~~~GavGt~a~~~~~~~~dr~~~~~v~~~~a~~LGl~~~~~~ 222 (436)
T cd03302 143 HYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLRFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPV 222 (436)
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcChhhhhHHHHhcCCchHHHHHHHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999999999999985 45667899999988887777322 46778899999999987 66
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHH
Q 009005 320 VTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (546)
Q Consensus 320 ~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~ 399 (546)
.+|+.+||+++|++++++.++++|+|||+|+++|+++|++.+++..+++|||||||||||+.+|++++.+. .+.+.+
T Consensus 223 ~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~s~~el~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~---~~~g~~ 299 (436)
T cd03302 223 TGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLANLKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLAR---HLMNLA 299 (436)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceecccccCCCCCcccCCCccCcHHHHHHHHHHH---HHHhhH
Confidence 66889999999999999999999999999999999999998877678999999999999999999988544 555554
Q ss_pred Hhhc---chhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHh--cC
Q 009005 400 SMKL---PISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRR--YG 472 (546)
Q Consensus 400 ~~~l---~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~--~G 472 (546)
...+ ..++||||+.+|...|. ++.++..+..++..+..++++|+||++||++|++.+++ ++||.++..|.+ +|
T Consensus 300 ~~~~~~~~~~~~Erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~g~~~se~~~~~L~~~g~~ 379 (436)
T cd03302 300 SNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGD 379 (436)
T ss_pred HHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCC
Confidence 3333 34457999999998886 56778888888889999999999999999999999976 689999998854 44
Q ss_pred chhHHHHHHHHhhccccc------cccHHHHHhhCC-C--CHHHHHhccccCcCcccCc
Q 009005 473 VPEPYEKLKELTRGKVVT------KESIREFIIGLE-L--PEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 473 ~~~Ah~iv~~~~~~a~~~------~~~l~e~~~~~~-l--~~~~~~~l~~ldP~~~~G~ 522 (546)
+.+||++|+++++.+..+ +.++++.+.+.. + +++++++ ++||++|+|.
T Consensus 380 ~~~Ah~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~dp~~~~g~ 436 (436)
T cd03302 380 RQDAHERIRVLSHQAAAVVKQEGGDNDLIERIKNDAYFKPIWDELDA--LLDPKTFIGR 436 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHhcCCCcCCCHHHHHH--HhCHHhhhCc
Confidence 559999999999988777 889999886531 2 5555666 4999999983
No 10
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.1e-81 Score=679.84 Aligned_cols=430 Identities=21% Similarity=0.270 Sum_probs=368.1
Q ss_pred cccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHH
Q 009005 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (546)
Q Consensus 82 ~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~ 161 (546)
|.+||+++||++ ++|+.+|||++++++|++||+||++||+ +.|+||++++++|.. .+.... .|++++.+.+
T Consensus 1 ~~~~~~~~~y~~--~~~~~i~s~~~~~~~~l~ve~A~a~al~---~~Giip~~~a~~I~~---~l~~~~-~d~~~~~~~~ 71 (451)
T PRK06390 1 MVVSPIEYRYGR--DQVKYIFDDENRLRYMLKVEAAIAKAEY---EYGIIPRDAFLDIKN---AVDSNS-VRLERVREIE 71 (451)
T ss_pred CCCCCcCcccCC--HHHHHHcCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHH---hccccc-CCHHHHHHHH
Confidence 457999999994 6999999999999999999999999999 999999877777643 232222 3678788888
Q ss_pred hhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 009005 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (546)
Q Consensus 162 ~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m 241 (546)
.+++|||+++|++|+++||+ +++|+|+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|++|+|
T Consensus 72 ~~~~~dv~~~~~~L~~~~g~------~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~lA~~~~~t~m 144 (451)
T PRK06390 72 SEIKHDVMALVEALSEQCSA------GKNYVHFGVTSNDINDTATALQIHDFVSI-IKDDIKNLMETLIKLIDEYKDSPM 144 (451)
T ss_pred HHhCCCcHHHHHHHHHHhhh------hhhheecCccHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCch
Confidence 89999999999999999974 78999999999999999999999999995 999999999999999999999999
Q ss_pred cccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCC
Q 009005 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (546)
Q Consensus 242 ~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~ 318 (546)
|||||+||||||||||||++|+++|.|+++||.++. ..++++|++||.++.|. +|+.+++++++.|||+.+.
T Consensus 145 ~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~r~~~~~~~gavGt~a~~g~-----~~~~~~~~~a~~LGl~~~~ 219 (451)
T PRK06390 145 MGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLGPVGTGAALGK-----DALDIQNRVMEILGIYSEI 219 (451)
T ss_pred hhhhCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhcChhhCCC-----cHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999985 67888999999776543 3557899999999999976
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceeccc-CCCCCCCCCCCCCCChhhHhhhhhchhhhhhH
Q 009005 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVT-KAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395 (546)
Q Consensus 319 ~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~-~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~ 395 (546)
..+++.+||++++++++++.++++|+|||+|+++|++ +|++.+.+ +++++|||||||||||+.+|++++.+.....+
T Consensus 220 ~~~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~e~g~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~~~~l 299 (451)
T PRK06390 220 GSTQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSL 299 (451)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCCCCCccCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 6668889999999999999999999999999999986 88887655 45899999999999999999998854432222
Q ss_pred HHHHHhhcchhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCc-
Q 009005 396 LSFLSMKLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGV- 473 (546)
Q Consensus 396 ~~~~~~~l~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~- 473 (546)
.+.... .....++||+++|..+|+ +...+..+..++..+..++++|+||++||++|++..+.++||.+++.|.+.|+
T Consensus 300 ~~~~~~-~~~~~~erd~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~se~la~~L~~~G~~ 378 (451)
T PRK06390 300 IIPEYE-AGVTWHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMP 378 (451)
T ss_pred HHHHHH-hhhHhhccCCcchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhccchhhHHHHHHHHHHcCCC
Confidence 221111 123347999999998886 44555566678888999999999999999999999777899999888855455
Q ss_pred -hhHHHHHHHHhhccccccccHHHHHhhCC----CCHHHHHhccccCcCcccCchHHHHHHHHHHhh
Q 009005 474 -PEPYEKLKELTRGKVVTKESIREFIIGLE----LPEEAKANLLNLTPHNYVGAAAELARNVDVAVN 535 (546)
Q Consensus 474 -~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~----l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~~~ 535 (546)
.+||++|+++++.+..++.++++++.+.. ++++++++ ++||.+|+|.++++++++++.++
T Consensus 379 ~~~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~~~~l~~~~l~~--~ldP~~~i~~a~~~v~~~~~~~~ 443 (451)
T PRK06390 379 RQDAHEFVRRASMEARSNGKSLKSSLIEAGILKYIDEKTLDR--AMDPANFIGQAPSICDNVVNNAE 443 (451)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhcCCHHHHHH--hcCHHHHhhhhHHHHHHHHHHHH
Confidence 59999999999987777888888765432 57777777 49999999999999999988763
No 11
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=1.1e-79 Score=664.85 Aligned_cols=431 Identities=20% Similarity=0.233 Sum_probs=370.7
Q ss_pred ccCccCc-cCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHH
Q 009005 83 ALSPLDG-RYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (546)
Q Consensus 83 ~~sp~~~-ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~ 161 (546)
+.+++-+ +|+ +++|+.+|||++++++|++||.|++++++ ++|+||++.+++|.+.+.. +. .|++++...+
T Consensus 3 ~~~~~~~~~~~--~~~~~~i~s~~~~i~a~l~ve~A~A~a~~---~~G~ip~~~a~~I~~a~~~-~~---~d~~~~~~~~ 73 (452)
T PRK09053 3 ASARLTDLYFG--SPAMRAIFSDRATVQRMLDFEAALARAEA---ACGVIPAAAVAPIEAACDA-ER---LDLDALAQAA 73 (452)
T ss_pred CCchhhhhhcC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHhccc-cC---CCHHHHHHHH
Confidence 3455444 676 47999999999999999999999999999 9999998888887543321 22 3688999999
Q ss_pred hhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 009005 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (546)
Q Consensus 162 ~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m 241 (546)
..++|++++++..|++.+|..+ .+.++|||+|+|||||+||+++|++|+++.. +.+.|.+++++|.++|++|++|+|
T Consensus 74 ~~~~~~~~~lv~~l~~~~~~~~--~~~~~~vH~G~SsnDi~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~~ 150 (452)
T PRK09053 74 ALAGNLAIPLVKQLTAQVAARD--AEAARYVHWGATSQDIIDTGLVLQLRDALDL-LEPDLDRLCDALATLAARHRATPM 150 (452)
T ss_pred hhcCCchHHHHHHHHHHhcccC--cchhccccCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCee
Confidence 9999999999999999997311 1478999999999999999999999999995 999999999999999999999999
Q ss_pred cccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCC
Q 009005 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (546)
Q Consensus 242 ~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~ 318 (546)
+||||+|||+||||||||++|+++|.|+++||.++. ..+++||+|||+++++ +.. +.+++++++.|||+.++
T Consensus 151 ~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgavGt~~~~~----~~~-~~v~~~~a~~LGl~~~~ 225 (452)
T PRK09053 151 VGRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGGAAGTLASLG----EQA-LPVAQALAAELQLALPA 225 (452)
T ss_pred ehhccCCcceechHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhcccccc----cch-HHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999985 7788999999987653 233 35789999999999877
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 319 ~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
.+ ++.+||++++++++++.++++|+|||+|+++|++ +|++.++...+++|||||||||||+.+|++++.+..+....
T Consensus 226 ~~-~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~~~e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~ 304 (452)
T PRK09053 226 LP-WHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLV 304 (452)
T ss_pred CC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhccccCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 66 4578999999999999999999999999999874 88887767778999999999999999999998555433333
Q ss_pred HHHHhhcchhhhcccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHH-HhcCc
Q 009005 397 SFLSMKLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVM-RRYGV 473 (546)
Q Consensus 397 ~~~~~~l~~~~~erDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l-~~~G~ 473 (546)
..+...++. ++|||+..|...| .+++++..+..++..+..++++|+||++||++|++.+++ ++||.+++.| +.+|+
T Consensus 305 ~~~~~~~~~-~~erd~~~~~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~l~~s~~~~~ae~~~~~La~~lgr 383 (452)
T PRK09053 305 ATLFAAMPQ-EHERALGGWHAEWDTLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALADRIGR 383 (452)
T ss_pred HHHHHhChh-hhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcCCHHHHHHHHHHHHhccCH
Confidence 223333333 4799999998777 778899999999999999999999999999999999886 6899999999 46899
Q ss_pred hhHHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHHHh
Q 009005 474 PEPYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDVAV 534 (546)
Q Consensus 474 ~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~~ 534 (546)
++||++|+++++.+..++.++++++.+. .+++++++++ +||.+|+|.+++++++++++.
T Consensus 384 ~~Ah~iV~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~~~l~~~--l~P~~~~g~~~~~~~~~~~~~ 447 (452)
T PRK09053 384 LDAHHLVEQASKRAVAEGRHLRDVLAEDPQVSAHLSPAALDRL--LDPAHYLGQAHAWVDRVLAEH 447 (452)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHhChhhhccCCHHHHHHH--cCHHHHhcchHHHHHHHHHHh
Confidence 9999999999988777888999987553 4677777774 999999999999999997544
No 12
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=1.5e-79 Score=661.27 Aligned_cols=420 Identities=34% Similarity=0.456 Sum_probs=360.0
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
+|+||+ +++|+++|||++++++|++||+||+++|+ +.|+||++++++|.+. ..+...|++++.+.++.++|
T Consensus 1 ~~~~y~--~~~~~~ifs~~~~~~~~l~ve~A~a~~l~---~~giip~~~a~~i~~~----~~~~~~d~~~l~~~~~~~~~ 71 (435)
T TIGR00928 1 LDERYG--TPEMRAIWSEENKFKTWLDVEVALLRALA---ELGVIPAEAVKEIRAK----ANFTDVDLARIKEIEAVTRH 71 (435)
T ss_pred CCcccC--cHHHHHHhCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHhh----CCCCccCHHHHHHHHHHHCc
Confidence 578999 57999999999999999999999999999 9999998777776432 23444578888888889999
Q ss_pred chhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Q 009005 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (546)
Q Consensus 167 dv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH 246 (546)
||+++|++|++++|+ +++|||+|+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++|+|+||||
T Consensus 72 ~v~~~e~~l~~~~g~------~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH 144 (435)
T TIGR00928 72 DVKAVVYALKEKCGA------EGEFIHFGATSNDIVDTALALLLRDALEI-ILPKLKQLIDRLKDLAVEYKDTVMLGRTH 144 (435)
T ss_pred ChHHHHHHHHHHhhh------hhhheeecccHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccchHhHHhc
Confidence 999999999999974 78999999999999999999999999995 99999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccc
Q 009005 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (546)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~ 323 (546)
+|||||||||||+++|+++|.|+++||.++. ..+++|||+||....+.. ++.+++++++.|||+.++.++++
T Consensus 145 ~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGa~Gt~~~~~~~-----~~~~~~~~a~~LGl~~~~~~~~~ 219 (435)
T TIGR00928 145 GQHAEPTTLGKKFALWADEMKRQLERLLQAKERIKVGGISGAVGTHAAAYPL-----VEEVEERVTEFLGLKPVPISTQI 219 (435)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccchhhhHhhcccc-----HHHHHHHHHHhcCCCCCCCCccc
Confidence 9999999999999999999999999999985 667788999995443211 24678999999999997766678
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh
Q 009005 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (546)
Q Consensus 324 ~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~ 401 (546)
.+||++++++++++.++++|+|||+|+++|++ +|++.++...+++|||||||||||+.+|++++++..+......+..
T Consensus 220 ~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~~~~~el~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~ 299 (435)
T TIGR00928 220 EPRDRHAELLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALE 299 (435)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceecccCCCCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 4444444445679999999999999999999966643333333333
Q ss_pred hcchhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHHH-Hh-cCchhHH
Q 009005 402 KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTVM-RR-YGVPEPY 477 (546)
Q Consensus 402 ~l~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~l-~~-~G~~~Ah 477 (546)
.++ .+||||+++|..+|. ++.++..+..++..+..++++|+||++||++|++.++++ .++.++..| ++ +|+.+||
T Consensus 300 ~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~a~~la~~L~~~g~g~~~Ah 378 (435)
T TIGR00928 300 NVP-LWHERDLTDSSVERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEAY 378 (435)
T ss_pred Hhh-HHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHhHHHHHHHHHHhCCChhhHH
Confidence 343 358999999988886 778888999999999999999999999999999999874 577777777 43 6777999
Q ss_pred HHHHHHhhcccc-ccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHH
Q 009005 478 EKLKELTRGKVV-TKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNV 530 (546)
Q Consensus 478 ~iv~~~~~~a~~-~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~ 530 (546)
++|+++++.+.. ++.++++++... .+++++++. ++||.+|+|.++++++++
T Consensus 379 ~~v~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~l~~--~ldp~~~~~~a~~~~~~~ 435 (435)
T TIGR00928 379 EIVRELAMGAAEVDEPDLLEFLLADERITKYLKEEELAE--LLDPETYIGNAREIVERV 435 (435)
T ss_pred HHHHHHHHHHHHcccccHHHHHhhCccchhhcCHHHHHH--cCCHHHHhChHHHHHHhC
Confidence 999999998777 788899987653 367777776 499999999999999864
No 13
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=7.8e-78 Score=648.60 Aligned_cols=420 Identities=23% Similarity=0.267 Sum_probs=363.5
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
+++||+ +++|+.+|||++++++|+.||.||++||+ +.|+||++.+++|.+ .+..+ ..+++.+...+.+++|
T Consensus 2 ~~~~y~--~~~~~~~~s~~~~i~~~~~ve~A~a~~l~---~~Gii~~~~a~~I~~---al~~~-~~~~~~~~~~~~~~~~ 72 (437)
T cd01597 2 LGDLFG--TPAMREIFSDENRVQAMLDVEAALARAQA---ELGVIPKEAAAEIAA---AADVE-RLDLEALAEATARTGH 72 (437)
T ss_pred CccccC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHH---hcccc-CCCHHHHHHHHHHhCC
Confidence 567999 57999999999999999999999999999 899999877777643 23333 2367778778888999
Q ss_pred chhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Q 009005 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (546)
Q Consensus 167 dv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH 246 (546)
+|+++|++|++++|. +.++|||+|+||||+++|+++|++|+++.. +.+.|.+|+++|.++|++|++|+||||||
T Consensus 73 ~v~a~e~~l~e~~g~-----~~g~~lH~grSrnD~~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~~~m~grTH 146 (437)
T cd01597 73 PAIPLVKQLTAACGD-----AAGEYVHWGATTQDIIDTALVLQLRDALDL-LERDLDALLDALARLAATHRDTPMVGRTH 146 (437)
T ss_pred CcHHHHHHHHHHcCc-----cccCeeecCccHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeehhhc
Confidence 999999999999985 368999999999999999999999999995 99999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccc
Q 009005 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (546)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~ 323 (546)
+||||||||||||++|+++|.|+++||.++. ..+++|||+||.++ +| .+++.+++++++.|||+.++.+ ++
T Consensus 147 ~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGga~Gtg~~----~~-~~~~~~~~~~a~~LGf~~~~~~-~~ 220 (437)
T cd01597 147 LQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLAS----LG-DQGLAVQEALAAELGLGVPAIP-WH 220 (437)
T ss_pred CccceechHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc----cC-CcHHHHHHHHHHHcCCCCCCCc-cc
Confidence 9999999999999999999999999999985 67788899999654 35 4556789999999999998776 56
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh
Q 009005 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (546)
Q Consensus 324 ~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~ 401 (546)
.+||++++++++++.++++|+|||+|+++|++ +|++.++...+++||||||||+||+.+|++++.++ .+.|++..
T Consensus 221 ~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~~e~gel~~~~~~~~~GSSiMPqK~NP~~~E~i~~~a~---~~~g~~~~ 297 (437)
T cd01597 221 TARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALAR---RVPGLAAL 297 (437)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeecccCCCCCCCCCCCCCcCcHHHHHHHHHHH---HHHHHHHH
Confidence 89999999999999999999999999999986 88888754468999999999999999999999655 45555432
Q ss_pred hcc--hhhhcccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHH-HhcCchhH
Q 009005 402 KLP--ISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVM-RRYGVPEP 476 (546)
Q Consensus 402 ~l~--~~~~erDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l-~~~G~~~A 476 (546)
.+. ..+|+||+..+...| .+++++..+..++..+..++++|+||++||+++++.++. ++||.++..| +.+|+.+|
T Consensus 298 ~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~~i~~~~A 377 (437)
T cd01597 298 LLDAMVQEHERDAGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLGRQEA 377 (437)
T ss_pred HHHhchhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHhcCHHHH
Confidence 221 245899998887655 455788888889999999999999999999999998875 5799999888 46889999
Q ss_pred HHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHH
Q 009005 477 YEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDV 532 (546)
Q Consensus 477 h~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~ 532 (546)
|++|+++++.+..++.++++++.+. .++++++++ ++||.+|+|++++.++++++
T Consensus 378 h~~v~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~~~l~~--~ldp~~~v~~a~~~~~~~~~ 436 (437)
T cd01597 378 HDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDEELDA--LLDPANYLGSAPALVDRVLA 436 (437)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhChhhhccCCHHHHHH--hcCHHHHhcchHHHHHHHHh
Confidence 9999999988777788888887543 356777776 49999999999999999874
No 14
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.8e-76 Score=628.31 Aligned_cols=365 Identities=24% Similarity=0.323 Sum_probs=318.9
Q ss_pred cCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCCchh
Q 009005 90 RYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVK 169 (546)
Q Consensus 90 ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~hdv~ 169 (546)
||+ +++|+++|||++++++|++||+||+++|+ +.|+||++++++|.+ .++ .+.+++.+.+..++||++
T Consensus 1 ~~~--~~~~~~~fs~~~~~~~~l~ve~A~a~~l~---~~Glip~~~a~~I~~---~l~----~~~~~~~~~~~~~~~dv~ 68 (387)
T cd01360 1 RYG--RPEMKKIWSEENKFRKWLEVEAAVCEAWA---KLGVIPAEAAEEIRK---KAK----FDVERVKEIEAETKHDVI 68 (387)
T ss_pred CCC--chHHHHHhCHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHH---Hhh----cCHHHHHHHHHHhCCChH
Confidence 466 57999999999999999999999999999 899999877777643 222 245667777888999999
Q ss_pred hHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccC
Q 009005 170 AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (546)
Q Consensus 170 a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~ 249 (546)
++|++|++++|+ +++|||+|+|||||++|+++|++|+++.. +.+.|.+++++|.++|++|++|+||||||+||
T Consensus 69 ~~e~~L~~~~g~------~~~~lH~G~S~nDi~~ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~ 141 (387)
T cd01360 69 AFVTAIAEYCGE------AGRYIHFGLTSSDVVDTALALQLREALDI-ILKDLKELLEVLKKKALEHKDTVMVGRTHGIH 141 (387)
T ss_pred HHHHHHHHHHHH------hhhheeCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCeeehhhcCCc
Confidence 999999999974 78999999999999999999999999995 99999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccccch
Q 009005 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETH 326 (546)
Q Consensus 250 A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~~~r 326 (546)
|||||||||+++|+++|.|+++||.++. ..+++|||+||.+++ | +.++++++++|||+.++.++++++|
T Consensus 142 A~P~TfG~~l~~~~~~L~r~~~rL~~~~~~~~~~~lgga~Gt~~~~----~----~~~~~~~a~~LG~~~~~~~~~~~~r 213 (387)
T cd01360 142 AEPTTFGLKFALWYAEFKRHLERLKEARERILVGKISGAVGTYANL----G----PEVEERVAEKLGLKPEPISTQVIQR 213 (387)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHhhcCccC----C----HHHHHHHHHHcCCCCCCCCCcccCc
Confidence 9999999999999999999999999985 678889999996543 3 2468999999999998877788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhcc
Q 009005 327 DYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLP 404 (546)
Q Consensus 327 D~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l~ 404 (546)
|+++|++++++.++++|+|||+|+++|++ +|++.+++..+++|||||||||||+.+|+++++++.+......+..+++
T Consensus 214 D~~~e~~~~la~~~~~L~ria~Dl~~~s~~e~gel~e~~~~~~~GSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~ 293 (387)
T cd01360 214 DRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIPALENVA 293 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999875 8888776556889999999999999999999966654444333344555
Q ss_pred hhhhcccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhh-hhHHHHHHHHHHHhcCc--hhHHHHH
Q 009005 405 ISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHA-WEVLAEPIQTVMRRYGV--PEPYEKL 480 (546)
Q Consensus 405 ~~~~erDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~-~~i~aE~~~~~l~~~G~--~~Ah~iv 480 (546)
. .|+||+++|..+| .+++++..+..++..+..++++|+||++||++|++.+ +.++||.+++.|.+.|+ .+||++|
T Consensus 294 ~-~~~rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~~r~Ah~~V 372 (387)
T cd01360 294 L-WHERDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIV 372 (387)
T ss_pred H-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 4799999998766 4557888888999999999999999999999999986 45789999998855455 5999999
Q ss_pred HH
Q 009005 481 KE 482 (546)
Q Consensus 481 ~~ 482 (546)
++
T Consensus 373 ~~ 374 (387)
T cd01360 373 QR 374 (387)
T ss_pred HH
Confidence 98
No 15
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=4.8e-76 Score=624.46 Aligned_cols=366 Identities=33% Similarity=0.456 Sum_probs=322.8
Q ss_pred hHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCCchhhHHHHHHH
Q 009005 98 LAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQ 177 (546)
Q Consensus 98 m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~hdv~a~e~~L~e 177 (546)
|+.+|||++++++|++||+||+++|+ +.|+||++++++|.+ .+..+. .|++++++.+..++|||+++|++|++
T Consensus 1 ~~~~~s~~~~~~~~l~ve~A~a~~l~---~~giip~~~a~~i~~---~l~~~~-~d~~~~~~~~~~~~~~v~~~e~~L~~ 73 (381)
T cd01595 1 MRAIFSEENKLRTWLDVEAALAEAQA---ELGLIPKEAAEEIRA---AADVFE-IDAERIAEIEKETGHDVIAFVYALAE 73 (381)
T ss_pred ChhHhChHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHH---hhhccc-CCHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 57899999999999999999999999 999999877777643 334442 47888888888999999999999999
Q ss_pred HhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhh
Q 009005 178 KCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGK 257 (546)
Q Consensus 178 ~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~ 257 (546)
++|+ ++++|+|+|+|||||++|+++|++|+++.. +.+.|.+++++|.++|++|++|+||||||+||||||||||
T Consensus 74 ~~g~-----~~~~~vH~g~S~nDi~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~~~dt~m~grTH~Q~A~P~T~G~ 147 (381)
T cd01595 74 KCGE-----DAGEYVHFGATSQDINDTALALQLRDALDI-ILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGK 147 (381)
T ss_pred Hhhh-----HhhhHeecCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCChHHhhcCCCCCcchhHHH
Confidence 9975 479999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccccchhHHHHHHH
Q 009005 258 EISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFY 334 (546)
Q Consensus 258 ~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~~~rD~~~e~~~ 334 (546)
|+++|+++|.|+++||.++. ..+++||++||.++++. +|+.+++++|+.|||..|++++++.+||+++|+++
T Consensus 148 ~~~~~~~~L~r~~~rL~~~~~~~~~~~lGga~G~g~~~~~-----~~~~~~~~~a~~LGl~~~~~~~~~~~rd~~~e~~~ 222 (381)
T cd01595 148 KFAVWAAELLRHLERLEEARERVLVGGISGAVGTHASLGP-----KGPEVEERVAEKLGLKVPPITTQIEPRDRIAELLS 222 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhcccHhhhHhhcCC-----cHHHHHHHHHHHcCCCCCCCCCCcccchHHHHHHH
Confidence 99999999999999999985 66778899999665432 45678999999999998888767779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhcchhhhcccC
Q 009005 335 AFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDL 412 (546)
Q Consensus 335 ~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l~~~~~erDl 412 (546)
+++.++++|+|||+|+++|++ +|++.++...+++|||||||||||+.+|++++++..+......+...+ .++||||+
T Consensus 223 ~l~~~~~~l~ria~Dl~~~~s~e~gev~~~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~erd~ 301 (381)
T cd01595 223 ALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENL-VQWHERDL 301 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeccccCCCCCCccCCCcCCcHHHHHHHHHHHHHHHHHHHHHHhh-hHhhccCC
Confidence 999999999999999999987 999988666789999999999999999999997665444444444444 44589999
Q ss_pred CcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhh-hHHHHHHHHHHH-h-cCchhHHHHHHH
Q 009005 413 TDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAW-EVLAEPIQTVMR-R-YGVPEPYEKLKE 482 (546)
Q Consensus 413 ~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~-~i~aE~~~~~l~-~-~G~~~Ah~iv~~ 482 (546)
++|.++|. +++++..+..++..+..++++|+||++||++|++.++ .++||.+++.|. + +|+.+||++|++
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~~g~g~~~Ah~~v~~ 375 (381)
T cd01595 302 SDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 99987774 5577888888889999999999999999999999999 589999988884 4 577799999997
No 16
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=8e-71 Score=600.50 Aligned_cols=419 Identities=15% Similarity=0.158 Sum_probs=333.3
Q ss_pred CccCccCCCCc-cch----HhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHH
Q 009005 85 SPLDGRYWSKV-KDL----APYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (546)
Q Consensus 85 sp~~~ry~~~~-~~m----~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~ 159 (546)
.-+.+||.+++ +++ ..-|.++++++.|++||+||++||+ +.|+||++++++|......+.+ .|++++.
T Consensus 10 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~ve~Aha~~l~---~~GiIp~e~a~~I~~al~~~~~---~~~~~l~- 82 (502)
T PRK06705 10 KSEGADFPGKTYVDCVLQHVFNFQRNYLLKDMFQVHKAHIVMLT---EENLMKKEEAKFILHALKKVEE---IPEEQLL- 82 (502)
T ss_pred HHhcccCCCCcchhHHhhcccchhHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHhhh---cccCccc-
Confidence 34667777642 122 2346788899999999999999999 9999999888887532221222 2445554
Q ss_pred HHhhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 009005 160 IERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNAN 238 (546)
Q Consensus 160 ~~~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~ 238 (546)
....+||| ..+|.++.+..|+ ++++|+|+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|++
T Consensus 83 -~~~~~edv~~~ie~~l~~~~G~-----~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~~-l~~~l~~l~~~l~~~A~~~~~ 155 (502)
T PRK06705 83 -YTEQHEDLFFLVEHLISQEAKS-----DFVSNMHIGRSRNDMGVTMYRMSLRRYVLR-LMEHHLLLQESILQLAADHKE 155 (502)
T ss_pred -cCCCCCchHHHHHHHHHHhcCc-----hhhccccCCCCHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 46789999 7788888887763 379999999999999999999999999995 999999999999999999999
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCC
Q 009005 239 ISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS 315 (546)
Q Consensus 239 t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~ 315 (546)
|+||||||+|||||||||||+++|+++|.|+++||.++. ..+++||++|+.++ +| ..++++|++|||+
T Consensus 156 t~m~g~TH~Q~AqP~T~G~~l~~~~~~l~r~~~rL~~~~~r~~~~plGgaag~gt~----~~-----~~r~~~a~~LGf~ 226 (502)
T PRK06705 156 TIMPAYTHTQPAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTS----FP-----IKRERVADLLGFT 226 (502)
T ss_pred CEEecccCCccceehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhhhhccCC----ch-----HHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999985 67888899988554 34 3589999999999
Q ss_pred CCC---CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchh
Q 009005 316 FNP---YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390 (546)
Q Consensus 316 ~~~---~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~ 390 (546)
.+. |+ ++.+||+++|++++++.++++|+|||+|+++|++ +|++++ .+.+.+|||||||||||+.+|++++.++
T Consensus 227 ~~~~ns~~-a~~~rD~~~e~~~~la~~~~~L~Ria~Dl~~~ss~e~g~iel-~e~~~~gSSiMPqKrNP~~~E~ir~~a~ 304 (502)
T PRK06705 227 NVIENSYD-AVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITV-ARPYVQISSIMPQKRNPVSIEHARAITS 304 (502)
T ss_pred CCcCCHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeee-cCCCCCccCCCCCCcCCHHHHHHHHHHH
Confidence 753 45 5679999999999999999999999999999975 898887 5677899999999999999999999655
Q ss_pred hhhhHHHHHHhhcc--hhhhcccCCcc--hhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHH
Q 009005 391 KANEDLSFLSMKLP--ISRWQRDLTDS--TVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQT 466 (546)
Q Consensus 391 la~~~~~~~~~~l~--~~~~erDl~~s--~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~ 466 (546)
.+.|.+...+. ...++||..+. .+...++.++..+..++..+..++++|+||++||++|++.++ ++||.++.
T Consensus 305 ---~~~g~~~~~l~~~~~~~~~~~~d~q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~-~~At~la~ 380 (502)
T PRK06705 305 ---SALGEAFTVFQMIHNTPFGDIVDTEDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYKHA-ITITDFAD 380 (502)
T ss_pred ---HHHHHHHHHHHHhcCCcchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHhcCc-hHHHHHHH
Confidence 45555432221 11123444442 223445566777777799999999999999999999999854 56666767
Q ss_pred HH-HhcCch--hHHHHHHHHhhccccccccHHHHHhh-----------CCCCHHHHHhccccCcCcc-------cCchHH
Q 009005 467 VM-RRYGVP--EPYEKLKELTRGKVVTKESIREFIIG-----------LELPEEAKANLLNLTPHNY-------VGAAAE 525 (546)
Q Consensus 467 ~l-~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~-----------~~l~~~~~~~l~~ldP~~~-------~G~a~~ 525 (546)
.| ++.|++ +||++|+++++.+...+.++.+.... ..++++++.. ++||.+| +|++|+
T Consensus 381 ~Lv~~~Gl~fr~Ah~iV~~~v~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ldp~~~v~~r~~~Gg~~p~ 458 (502)
T PRK06705 381 VLTKNYGIPFRHAHHAASVIANMSLEQKKELHELCFKDVNIYLQEKFKIQLLEKEWEE--IISPEAFIQKRNVYGGPSKK 458 (502)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHhhHHHHHhhhhhhhhhcCCHHHHHH--HCCHHHHHhhccCCCCCCHH
Confidence 77 454665 99999999999877667666654321 1245565655 4999977 579999
Q ss_pred HHHHHHHHh
Q 009005 526 LARNVDVAV 534 (546)
Q Consensus 526 ~v~~~~~~~ 534 (546)
.|+++++.+
T Consensus 459 ~v~~~~~~~ 467 (502)
T PRK06705 459 EMERMINNR 467 (502)
T ss_pred HHHHHHHHH
Confidence 999998766
No 17
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-70 Score=577.39 Aligned_cols=416 Identities=20% Similarity=0.266 Sum_probs=338.4
Q ss_pred ccCccCccCCCCccchHhhc-----ccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHH-HHHHHHhcCCcccHHH
Q 009005 83 ALSPLDGRYWSKVKDLAPYM-----SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDGFNMDDALE 156 (546)
Q Consensus 83 ~~sp~~~ry~~~~~~m~~if-----sd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~-~l~~~~~~~~~~d~~~ 156 (546)
...+|.|||++++++...-| .|..++.+.+....||+.+|+ +.|+|+.+.++.|. .|..+.++....
T Consensus 2 ~~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~---~~Gii~~ee~~~I~~~L~~l~~e~~~g---- 74 (459)
T COG0165 2 SNKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLA---KQGIITEEEAAKILEGLEELLEEIRAG---- 74 (459)
T ss_pred CCCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 34579999998766554444 456677788888899999999 99999987777663 333332221100
Q ss_pred HHHHHhhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009005 157 VKNIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (546)
Q Consensus 157 i~~~~~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~ 235 (546)
........+|| +++|++|.+++|+ .|+|+|+||||||+|.|+++||+|+.+.. |...+..|+++|+++|++
T Consensus 75 -~~~~~~~~EDvH~aiE~~L~~~iG~------~ggkLhtgRSRNDQVatd~rL~lr~~~~~-l~~~i~~l~~aL~~~Ae~ 146 (459)
T COG0165 75 -KFELDPDDEDVHTAIEARLIERIGD------VGGKLHTGRSRNDQVATDLRLWLRDKLLE-LLELIRILQKALLDLAEE 146 (459)
T ss_pred -CccCCCccccHHHHHHHHHHHHHhh------hhchhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 01122345689 9999999999995 89999999999999999999999999997 999999999999999999
Q ss_pred cccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh------hcccccccc-cCccccccCCCCCChhhHHHHH
Q 009005 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE------IMGKFAGAV-GNYNAHLSAYPDVNWPQITEDF 308 (546)
Q Consensus 236 ~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~------~~g~~gGAv-GT~aa~~~~~p~~d~~~v~~~l 308 (546)
|.+|+||||||+|+|||+|||||+.+|++.|.||++||.++. |+|+ ||. || .|| +| ++++
T Consensus 147 ~~~~imPGyTHlQ~AQPvtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGa--gAlaGt------~~~-iD----R~~t 213 (459)
T COG0165 147 HAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGA--GALAGT------PFP-ID----RERT 213 (459)
T ss_pred ccCCccCCcccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCCC------CCC-CC----HHHH
Confidence 999999999999999999999999999999999999999873 7775 443 55 577 77 8899
Q ss_pred HHHcCCCC---CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHh
Q 009005 309 VKSLGLSF---NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFE 383 (546)
Q Consensus 309 a~~LGl~~---~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E 383 (546)
|++|||+. |+++ ++++||+++|+++++++++.+|+|||+|+++|++ |||+++ ++.+++||||||||+||+.+|
T Consensus 214 A~lLGF~~~~~Nsld-avs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~EfgfI~l-~D~~sTGSSIMPQKKNPD~~E 291 (459)
T COG0165 214 AELLGFDAVTRNSLD-AVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIEL-PDEFSTGSSIMPQKKNPDVLE 291 (459)
T ss_pred HHHcCCchhhcCchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCceEeC-CcccccccccCCCCCCCcHHH
Confidence 99999997 7888 8899999999999999999999999999999986 899998 689999999999999999999
Q ss_pred hhhhchhhhhhHHHHH------HhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhh
Q 009005 384 NSEGNLGKANEDLSFL------SMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAW 457 (546)
Q Consensus 384 ~~~g~~~la~~~~~~~------~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~ 457 (546)
++||+.+. +.|.+ .+++|.+ |+||+|+.. ..+++++.....++..+..++++|+||+++|++.+..++
T Consensus 292 LiRgk~gr---v~G~l~~ll~~~k~lPla-YnrDlQedk--e~lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a~~~gf 365 (459)
T COG0165 292 LIRGKAGR---VIGALTGLLTIMKGLPLA-YNRDLQEDK--EPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAAEAGF 365 (459)
T ss_pred HHHHhhhh---hHHHHHHHHHHHhcCccc-ccHHHHhhh--HHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHhhccc
Confidence 99998874 44432 4567776 999999763 223356778888889999999999999999999999988
Q ss_pred hHHHHHHHHHHHhcCch--hHHHHHHHHhhccccccccHHHHHh----hC--CCCHHHHHhc--c-ccC-cCcccCchHH
Q 009005 458 EVLAEPIQTVMRRYGVP--EPYEKLKELTRGKVVTKESIREFII----GL--ELPEEAKANL--L-NLT-PHNYVGAAAE 525 (546)
Q Consensus 458 ~i~aE~~~~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~----~~--~l~~~~~~~l--~-~ld-P~~~~G~a~~ 525 (546)
.+.+|.++. |.+.|+| +||++|+++++.+...+.++.++.. .. .++++..+.| . .++ -..++|++|+
T Consensus 366 s~aTdlAd~-lv~kGvPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~l~~~~~v~~R~~~Ggtap~ 444 (459)
T COG0165 366 STATDLADY-LVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVAKRNSEGGTAPE 444 (459)
T ss_pred chHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHcCCCHHhccHHHHhhhccccchHHHHHhchHHHHHHhhccCCCCHH
Confidence 888888855 5459999 9999999999987766665555421 11 2444444332 0 222 2367999999
Q ss_pred HHHHHHHHhh
Q 009005 526 LARNVDVAVN 535 (546)
Q Consensus 526 ~v~~~~~~~~ 535 (546)
.|++.+++++
T Consensus 445 ~v~~~i~~~~ 454 (459)
T COG0165 445 EVREAIARAK 454 (459)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 18
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.4e-70 Score=593.26 Aligned_cols=418 Identities=17% Similarity=0.215 Sum_probs=335.1
Q ss_pred ccCccCCCCccchHhhcccchhHHHHHH---HH--HHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-hcCCcccHHHHHH
Q 009005 86 PLDGRYWSKVKDLAPYMSEYGLIYFRVL---VE--IKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-DGFNMDDALEVKN 159 (546)
Q Consensus 86 p~~~ry~~~~~~m~~ifsd~~~~~~~l~---vE--~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~~~~~~d~~~i~~ 159 (546)
-|++||.+..+++..+|++...++.|+. +| +||+++|+ +.|+||++++++|...+..+ +..+ .|+..+.+
T Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~---e~Gii~~~~a~~I~~al~~i~~~~~-~~~~~~~~ 78 (455)
T PRK04833 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALV---TVGVLTADEQQQLEEALNELLEEVR-ANPQQILA 78 (455)
T ss_pred CcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhhhh-cCCcccCC
Confidence 4778999877789999999999999999 99 99999999 99999998888885332222 1211 12222222
Q ss_pred HHhhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 009005 160 IERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNAN 238 (546)
Q Consensus 160 ~~~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~ 238 (546)
...+|| ..+|++|.+++|+ .++|+|+|+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++
T Consensus 79 ---~~~edv~~~ie~~L~~~~g~------~g~~lH~grSrnD~~~Ta~rl~~r~~l~~-l~~~l~~l~~~L~~~A~~~~~ 148 (455)
T PRK04833 79 ---SDAEDIHSWVEGKLIDKVGD------LGKKLHTGRSRNDQVATDLKLWCKDQVAE-LLTALRQLQSALVETAENNQD 148 (455)
T ss_pred ---CCCchHHHHHHHHHHHHhcc------ccCcccCCCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 234567 6777799999974 68899999999999999999999999995 999999999999999999999
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hccccccc--ccCccccccCCCCCChhhHHHHHHHHcC
Q 009005 239 ISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFVKSLG 313 (546)
Q Consensus 239 t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGA--vGT~aa~~~~~p~~d~~~v~~~la~~LG 313 (546)
|+||||||+|||||||||||+++|+++|.|+++||.++. ..+++||+ +||. +| +| ++++|++||
T Consensus 149 tvm~GrTH~Q~AqP~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgaA~~GT~------~~-~d----r~~~a~~LG 217 (455)
T PRK04833 149 AVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTA------YE-ID----REQLAGWLG 217 (455)
T ss_pred CEEeccccCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC------CC-CC----HHHHHHHhC
Confidence 999999999999999999999999999999999999984 45566666 5873 34 45 789999999
Q ss_pred CCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhch
Q 009005 314 LSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNL 389 (546)
Q Consensus 314 l~~~~~~~--~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~ 389 (546)
|+.+..++ ++.+||++++++++++.++++|+|||+|+++|++ +|+++++ +.+++|||||||||||+.+|++++.+
T Consensus 218 f~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g~~el~-~~~~~gSSiMPqKrNP~~~E~ir~~a 296 (455)
T PRK04833 218 FASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFNSGEAGFVELS-DRVTSGSSLMPQKKNPDALELIRGKC 296 (455)
T ss_pred CCCCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeeC-CCCCCCcccCCCCCCChHHHHHHHHH
Confidence 98854332 4789999999999999999999999999999985 8988884 78899999999999999999999966
Q ss_pred hhhhhHHHHHH---hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHH
Q 009005 390 GKANEDLSFLS---MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQT 466 (546)
Q Consensus 390 ~la~~~~~~~~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~ 466 (546)
+.+......+. .+++. .|+||+++|. ..+++++..+..++..+..++++|+||++||++++..++.. ++.++.
T Consensus 297 ~~~~g~~~~~~~~~~~~~~-~~~rd~~~~~--~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~~~-a~~~a~ 372 (455)
T PRK04833 297 GRVQGALTGMLMTLKGLPL-AYNKDMQEDK--EGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYAN-ATELAD 372 (455)
T ss_pred HHHHhhHHHHHHHHhCChH-HHhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHhhCeECHHHHHHHHHccHHH-HHHHHH
Confidence 64332222222 55566 4899999985 34556788888899999999999999999999998877654 444555
Q ss_pred HHHhcCch--hHHHHHHHHhhccccccccHHHHHh----hC-CCCHHHHHhccccCcCc-------ccCchHHHHHHHHH
Q 009005 467 VMRRYGVP--EPYEKLKELTRGKVVTKESIREFII----GL-ELPEEAKANLLNLTPHN-------YVGAAAELARNVDV 532 (546)
Q Consensus 467 ~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~----~~-~l~~~~~~~l~~ldP~~-------~~G~a~~~v~~~~~ 532 (546)
.|.+.|++ +||++|+++++.+...+.++.++.. .. ...++++.. ++||.. ++|++|+.|+++++
T Consensus 373 ~L~~~g~~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~p~~~v~~r~~~Gg~~~~~v~~~~~ 450 (455)
T PRK04833 373 YLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSSVIGDDVYP--ILSLQSCLDKRAAKGGVSPQQVAQAIA 450 (455)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHhcccchHHHHH--hCCHHHHHHhccCCCCCCHHHHHHHHH
Confidence 55433655 9999999999877666666665432 21 223333444 489874 47999999999997
Q ss_pred Hhh
Q 009005 533 AVN 535 (546)
Q Consensus 533 ~~~ 535 (546)
+.+
T Consensus 451 ~~~ 453 (455)
T PRK04833 451 AAK 453 (455)
T ss_pred HHh
Confidence 764
No 19
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=3.8e-70 Score=588.66 Aligned_cols=404 Identities=19% Similarity=0.197 Sum_probs=330.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-hcCCcccHHHHHHHHhhhCCchhhHHHHHHHHhhc
Q 009005 103 SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-DGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQS 181 (546)
Q Consensus 103 sd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~~~~~~d~~~i~~~~~~~~hdv~a~e~~L~e~~g~ 181 (546)
.|++++++|+.||.||++||+ +.|+||++.+++|.+.+..+ +.+ +++++.... ..+|+++++|++|++++|+
T Consensus 4 ~d~~~~~~~~~ve~A~a~al~---~~Gii~~~~a~~I~~al~~~~~~~---~~~~~~~~~-~~~~~~~~~e~~l~~~~g~ 76 (435)
T cd01359 4 FDRRLFEEDIAGSIAHAVMLA---EQGILTEEEAAKILAGLAKIRAEI---EAGAFELDP-EDEDIHMAIERRLIERIGD 76 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhhc---ccCCccCCC-CCCcHHHHHHHHHHHHHHH
Confidence 477899999999999999999 99999998888885433222 122 334444333 5677779999999999964
Q ss_pred CchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHH
Q 009005 182 QPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISV 261 (546)
Q Consensus 182 ~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~ 261 (546)
.++|||+|+|||||+||+++|++|+++.. +.+.|.+++++|.++|++|++|+|+||||+|||||||||||+++
T Consensus 77 ------~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~ 149 (435)
T cd01359 77 ------VGGKLHTGRSRNDQVATDLRLYLRDALLE-LLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLA 149 (435)
T ss_pred ------HHhhhhccCCHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCEecCCCCCccceeccHHHHHHH
Confidence 68899999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCc--cccchhHHHHHHHHH
Q 009005 262 FAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT--QIETHDYMAKLFYAF 336 (546)
Q Consensus 262 ~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~--~~~~rD~~~e~~~~l 336 (546)
|+++|.|+++||.++. ..+++||++||.++ +| +| +++++++|||+.+.+++ ++.+||+++++++++
T Consensus 150 ~~~~l~r~~~rL~~~~~~~~~~~lGgaag~gt~----~~-~~----~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l 220 (435)
T cd01359 150 YAEMLERDLERLADAYKRVNVSPLGAGALAGTT----FP-ID----RERTAELLGFDGPTENSLDAVSDRDFVLEFLSAA 220 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCcccccccCCC----CC-CC----HHHHHHHcCCCCCccCHHHHHhcchHHHHHHHHH
Confidence 9999999999999986 57888899987544 34 33 78899999999765542 347899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhc-c-hhhhcccC
Q 009005 337 VRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL-P-ISRWQRDL 412 (546)
Q Consensus 337 a~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l-~-~~~~erDl 412 (546)
+.++++|+|||+|+++|++ +|++.+ ++.+++|||||||||||+.+|++++.+..+......+...+ . ..+++||+
T Consensus 221 ~~~a~~l~ria~Dl~l~~~~e~gev~l-pe~~~~GSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~d~ 299 (435)
T cd01359 221 ALLMVHLSRLAEDLILWSTQEFGFVEL-PDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDL 299 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeeeC-CCCCCCccccCCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcCCCCccchhH
Confidence 9999999999999999986 899987 45667999999999999999999985553332222222222 0 23478888
Q ss_pred CcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCc--hhHHHHHHHHhhcccc
Q 009005 413 TDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM-RRYGV--PEPYEKLKELTRGKVV 489 (546)
Q Consensus 413 ~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~--~~Ah~iv~~~~~~a~~ 489 (546)
++. +..+++++..+..+++.+..++++|+||+++|++|++.++. ++|.++..| ++.|+ .+||++|+++++.+..
T Consensus 300 ~~~--~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~~~~~-~a~~l~~~l~~~~g~~~r~Ah~~v~~~~~~a~~ 376 (435)
T cd01359 300 QED--KEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAEAGFS-TATDLADYLVREKGVPFREAHHIVGRAVRLAEE 376 (435)
T ss_pred HHh--hHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 772 34566788888999999999999999999999999996654 455555666 53555 5999999999988777
Q ss_pred ccccHHHHHhh-----CCCCHHHHHhccccCcCccc-------CchHHHHHHHHHHhh
Q 009005 490 TKESIREFIIG-----LELPEEAKANLLNLTPHNYV-------GAAAELARNVDVAVN 535 (546)
Q Consensus 490 ~~~~l~e~~~~-----~~l~~~~~~~l~~ldP~~~~-------G~a~~~v~~~~~~~~ 535 (546)
++.++.+++.+ ..+++++++. ++||.+|+ |++|+.+++++++.+
T Consensus 377 ~g~~~~~~~~~~~~~~~~l~~~~l~~--~ldp~~~~~~r~~~Gg~~~~~~~~~~~~~~ 432 (435)
T cd01359 377 KGKDLSDLTLAELQAISPLFEEDVRE--ALDPENSVERRTSYGGTAPAEVREQIARAR 432 (435)
T ss_pred cCCChhhcCHHHHHhhcccCHHHHHH--hCCHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 77777776432 2467777777 49999886 899999999998774
No 20
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=2e-69 Score=585.61 Aligned_cols=420 Identities=19% Similarity=0.235 Sum_probs=338.3
Q ss_pred ccCccCCCCccchHhhcc-----cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHH-HHHHHhcCCcccHHHHHH
Q 009005 86 PLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVKN 159 (546)
Q Consensus 86 p~~~ry~~~~~~m~~ifs-----d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~-l~~~~~~~~~~d~~~i~~ 159 (546)
.|++||.++++++...|+ |..++++.+.+++||++||+ +.|+||++.+++|.+ +.++.......+ +
T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~---~~G~l~~~~a~~I~~al~~i~~~~~~~~---~-- 72 (455)
T TIGR00838 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLK---KAGILTEEEAAKIIEGLNELKEEGREGP---F-- 72 (455)
T ss_pred CCCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCC---c--
Confidence 388999987777777888 99999999999999999999 899999888887743 332222211100 1
Q ss_pred HHhhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 009005 160 IERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNAN 238 (546)
Q Consensus 160 ~~~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~ 238 (546)
......+|+ +++|++|++++|. +.++|||+|+||||+++|+++|++|+++.. +.+.|..++++|.++|++|++
T Consensus 73 ~~~~~~~d~~~~ie~~l~e~~g~-----~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~ 146 (455)
T TIGR00838 73 ILDPDDEDIHMAIERELIDRVGE-----DLGGKLHTGRSRNDQVATDLRLYLRDHVLE-LAEALLDLQDALIELAEKHVE 146 (455)
T ss_pred CCCCCcCcHHHHHHHHHHHHhCC-----CccCCccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccC
Confidence 112234788 9999999999984 367899999999999999999999999996 999999999999999999999
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccc--cCccccccCCCCCChhhHHHHHHHHcC
Q 009005 239 ISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAV--GNYNAHLSAYPDVNWPQITEDFVKSLG 313 (546)
Q Consensus 239 t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAv--GT~aa~~~~~p~~d~~~v~~~la~~LG 313 (546)
++||||||+||||||||||||++|+++|.|+++||.++. ..+++||+. || .+| +| ++++++.||
T Consensus 147 ~~m~grTH~Q~A~P~T~G~~~~~~~~~L~r~~~rL~~~~~~~~~~plGg~a~aGt------~~~-~~----r~~~a~~LG 215 (455)
T TIGR00838 147 TLMPGYTHLQRAQPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGT------GFP-ID----REYLAELLG 215 (455)
T ss_pred CEeecccccccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhcccCC------CCC-CC----HHHHHHHcC
Confidence 999999999999999999999999999999999999985 445555443 43 234 33 788999999
Q ss_pred CCCC---CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhc
Q 009005 314 LSFN---PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGN 388 (546)
Q Consensus 314 l~~~---~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~ 388 (546)
|+.+ +|+ ++.+||++++++++++.++++|+|||+|+++|++ +|++.+ ++.+++||||||||+||+.+|++++.
T Consensus 216 ~~~~~~n~~~-a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~l-p~~~~~GSSiMP~K~NP~~~E~i~~~ 293 (455)
T TIGR00838 216 FDAVTENSLD-AVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVEL-PDEFSSGSSIMPQKKNPDVAELIRGK 293 (455)
T ss_pred CCCCcCCHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeC-CCCCCCccCCCCCCcCChHHHHHHHH
Confidence 9984 344 5789999999999999999999999999999986 899987 45678999999999999999999996
Q ss_pred hhhhhhHHHHHH---hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHH
Q 009005 389 LGKANEDLSFLS---MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQ 465 (546)
Q Consensus 389 ~~la~~~~~~~~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~ 465 (546)
+..+......+. .+++.+ |+||+++. ...+++++..+..+++.+..++++|+||++||++|+..++.+ ++.+.
T Consensus 294 a~~~~g~~~~~~~~~~~~~~~-~~rd~~~~--~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~~~~~~~~~-at~la 369 (455)
T TIGR00838 294 TGRVQGNLTGMLMTLKALPLA-YNRDLQED--KEPLFDALKTVELSLEMATGMLDTITVNKERMEEAASAGFSN-ATELA 369 (455)
T ss_pred HHHHhhhHHHHHHHHhcCChH-hhhhhHhh--HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccH-HHHHH
Confidence 654333322222 344553 79998873 234567788888999999999999999999999999887654 55555
Q ss_pred HHHHhcCch--hHHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcc-------cCchHHHHHHHH
Q 009005 466 TVMRRYGVP--EPYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNY-------VGAAAELARNVD 531 (546)
Q Consensus 466 ~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~-------~G~a~~~v~~~~ 531 (546)
..|.+.|++ +||++|+++++.+..++.+++++..+. .+.+++++. ++||.+| +|++|+.+++++
T Consensus 370 ~~Lv~~g~~~r~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~~~~~~~~~~l~~--~ldp~~~v~~r~~~Gg~~~~~~~~~~ 447 (455)
T TIGR00838 370 DYLVRKGVPFREAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVYE--ALDPESSVEKRDAKGGTAPEEVLQAI 447 (455)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCHHHHHH--HCCHHHHHHhccCCCCCCHHHHHHHH
Confidence 666433665 999999999998877888888876432 234445665 4999866 699999999999
Q ss_pred HHhhHhc
Q 009005 532 VAVNLVN 538 (546)
Q Consensus 532 ~~~~~~~ 538 (546)
++.+-.-
T Consensus 448 ~~~~~~~ 454 (455)
T TIGR00838 448 AEAKARL 454 (455)
T ss_pred HHHHHhc
Confidence 8876543
No 21
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=6.9e-69 Score=581.69 Aligned_cols=416 Identities=17% Similarity=0.159 Sum_probs=330.0
Q ss_pred CccCccCCCCccc-hH----hhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHH-HHHHHhcCCcccHHHHH
Q 009005 85 SPLDGRYWSKVKD-LA----PYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVK 158 (546)
Q Consensus 85 sp~~~ry~~~~~~-m~----~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~-l~~~~~~~~~~d~~~i~ 158 (546)
..|.+||.+++++ +. .+=-|..++++.+.+.+||++||+ +.|+||++.+++|.. +.++.+......+ .
T Consensus 17 ~~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~---~~Gii~~~~a~~I~~al~~i~~~~~~~~f---~ 90 (474)
T PLN02646 17 KLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLA---KQGIITDEDRDSILDGLDEIEKEIEAGKF---E 90 (474)
T ss_pred hhhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCC---c
Confidence 4689999875444 33 233366788899999999999999 999999888888743 3332222111111 0
Q ss_pred HHHhhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 009005 159 NIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNA 237 (546)
Q Consensus 159 ~~~~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~ 237 (546)
.....+|+ +++|++|.+++|+ .++|||+|+|||||++|+++|++|+++.. +.+.|.+|+++|.++|++|+
T Consensus 91 --~~~~~ed~h~~iE~~L~e~~G~------~g~~lH~grSrND~v~Ta~~L~lr~~l~~-l~~~L~~L~~~L~~~A~~~~ 161 (474)
T PLN02646 91 --WRPDREDVHMNNEARLTELIGE------PAKKLHTARSRNDQVATDTRLWCRDAIDV-IRKRIKTLQVALVELAEKNV 161 (474)
T ss_pred --CCCCCCchHHHHHHHHHHHhch------hhCcccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 11223577 9999999999974 68899999999999999999999999995 99999999999999999999
Q ss_pred cccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cc-cCccccccCCCCCChhhHHHHHHHHc
Q 009005 238 NISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AV-GNYNAHLSAYPDVNWPQITEDFVKSL 312 (546)
Q Consensus 238 ~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-Av-GT~aa~~~~~p~~d~~~v~~~la~~L 312 (546)
+|+||||||+|||||||||||+++|+++|.|+++||.++. ..+++|| |+ || .+| +| ++++|++|
T Consensus 162 dtvmpGrTHlQ~AqPiT~G~~l~~~~~~l~rd~~RL~~~~~r~~~~pLGgga~aGt------~~~-id----r~~~A~~L 230 (474)
T PLN02646 162 DLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLGSCALAGT------GLP-ID----RFMTAKDL 230 (474)
T ss_pred CCEEecccCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhcCC------CCC-CC----HHHHHHHh
Confidence 9999999999999999999999999999999999999985 3444444 33 43 244 54 78899999
Q ss_pred CCCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhc
Q 009005 313 GLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGN 388 (546)
Q Consensus 313 Gl~~~~~~~--~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~ 388 (546)
||..+..++ ++++||+++|++++++.++++|+|||+|+++|++ +|++.++ +.+++|||||||||||+.+|+++++
T Consensus 231 Gf~~~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~v~~~-d~~~~GSSiMPqKrNP~~~E~ir~~ 309 (474)
T PLN02646 231 GFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEEFGFVTPS-DAVSTGSSIMPQKKNPDPMELVRGK 309 (474)
T ss_pred CCCCCCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeeC-CCCCCCcCCCCCCCCCHHHHHHHHH
Confidence 998754332 5789999999999999999999999999999985 9999985 8899999999999999999999996
Q ss_pred hhhhhhHHHHH---H---hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHH
Q 009005 389 LGKANEDLSFL---S---MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAE 462 (546)
Q Consensus 389 ~~la~~~~~~~---~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE 462 (546)
++ .+.|.+ . .++|. .|+||+++. +..+++++..+..++..+..++++|+||++||+++++.++ ++++
T Consensus 310 a~---~v~G~~~~~~~~~~~~p~-~~~rD~q~~--~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~-~~At 382 (474)
T PLN02646 310 SA---RVIGDLVTVLALCKGLPT-AYNRDLQED--KEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLPAGM-LDAT 382 (474)
T ss_pred HH---HHHhhhHHHHHHhcCCch-HhhcchhhH--HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCc-cHHH
Confidence 55 454443 2 45566 489999754 2245567888888999999999999999999999999665 4566
Q ss_pred HHHHHHHhcCch--hHHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcC-------cccCchHHHHH
Q 009005 463 PIQTVMRRYGVP--EPYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPH-------NYVGAAAELAR 528 (546)
Q Consensus 463 ~~~~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~-------~~~G~a~~~v~ 528 (546)
.++..|.+.|++ +||++|+++++.+...+.++.++..+. ...++++.. ++||+ .++|++|+.|+
T Consensus 383 ~la~~Lv~~Gi~fr~Ah~iV~~~v~~a~~~g~~l~~l~~~~~~~~~~~~~~~~~~--~l~~~~~v~~r~~~Gg~~p~~v~ 460 (474)
T PLN02646 383 TLADYLVRKGVPFRETHHIVGAAVALAESKGCELSDLTLEDLKSINPVFEEDVYE--VLGVENSVEKFDSYGSTGSRSVL 460 (474)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccchHHHHH--hCCHHHHHHHccCCCCCCHHHHH
Confidence 666777544766 999999999998877777887764321 122333333 48887 45799999999
Q ss_pred HHHHHhhH
Q 009005 529 NVDVAVNL 536 (546)
Q Consensus 529 ~~~~~~~~ 536 (546)
+++++++-
T Consensus 461 ~~~~~~~~ 468 (474)
T PLN02646 461 EQLEKWRT 468 (474)
T ss_pred HHHHHHHH
Confidence 99988753
No 22
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=2.4e-69 Score=604.51 Aligned_cols=422 Identities=16% Similarity=0.186 Sum_probs=336.4
Q ss_pred ccCccCCCCccchHhhcccchhHHHHHHHH-----HHHHHHHhcCCCCCCCCcccHHHHHHHHHHHh-cCCcccHHHHHH
Q 009005 86 PLDGRYWSKVKDLAPYMSEYGLIYFRVLVE-----IKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID-GFNMDDALEVKN 159 (546)
Q Consensus 86 p~~~ry~~~~~~m~~ifsd~~~~~~~l~vE-----~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~-~~~~~d~~~i~~ 159 (546)
-|.+||.++.++...+|++...++.|+.+| +||++||+ +.|+||++++++|.+....+. ... .|++.+.+
T Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~---~~Giip~~~a~~I~~~l~~~~~~~~-~~~~~~~~ 78 (614)
T PRK12308 3 LWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALL---SVGVLSEEEQQKLELALNELKLEVM-EDPEQILL 78 (614)
T ss_pred ccccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCC
Confidence 478999987777777999999999999999 99999999 999999988888753222111 110 13344455
Q ss_pred HHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 009005 160 IERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANI 239 (546)
Q Consensus 160 ~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t 239 (546)
.+.+++|++ +|++|++++|+ +++|+|+|+|||||++|+++|++|+++.. +.+.|.+++++|.++|++|++|
T Consensus 79 ~~~ed~h~~--ie~~L~~~~g~------~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~-l~~~l~~l~~~l~~~a~~~~~t 149 (614)
T PRK12308 79 SDAEDIHSW--VEQQLIGKVGD------LGKKLHTGRSRNDQVATDLKLWCRQQGQQ-LLLALDQLQQQMVNVAERHQGT 149 (614)
T ss_pred CccccHHHH--HHHHHHHHhcc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC
Confidence 566666655 55999999974 79999999999999999999999999995 9999999999999999999999
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCC
Q 009005 240 SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316 (546)
Q Consensus 240 ~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~ 316 (546)
+||||||+|||||||||||+++|+++|.|+++||.++. ..+++|| |++++. .+| + .++++|+.|||..
T Consensus 150 ~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGg--ga~agt--~~~-~----~r~~~a~~LG~~~ 220 (614)
T PRK12308 150 VLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGS--GALAGT--AYP-I----DREALAHNLGFRR 220 (614)
T ss_pred EeecCcCCcccEEecHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchh--ccccCC--CCC-C----CHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999985 4556655 443322 245 3 3889999999987
Q ss_pred CCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhh
Q 009005 317 NPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392 (546)
Q Consensus 317 ~~~~~--~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la 392 (546)
+..++ ++.+||+++|++++++.++++|+|||+|+++|++ +|+++++ +.+++||||||||+||+.+|++++.++.+
T Consensus 221 ~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~ss~e~g~~el~-~~~~~gSSiMPqK~NP~~~E~i~~~a~~~ 299 (614)
T PRK12308 221 ATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSGESGFIELA-DTVTSGSSLMPQKKNPDALELIRGKTGRV 299 (614)
T ss_pred CcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCEEeC-ccCCCccccCcCccCCcHHHHHHHHHHHH
Confidence 54331 5789999999999999999999999999999985 8988884 78889999999999999999999965543
Q ss_pred hhHHHHHH---hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHH
Q 009005 393 NEDLSFLS---MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMR 469 (546)
Q Consensus 393 ~~~~~~~~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~ 469 (546)
......+. .+++. .|+||+++| +..+++++..+..++..+..++++|+||++||++|+..++ ++|+.++..|.
T Consensus 300 ~g~~~~~~~~~~~~~~-~~~rd~~~~--~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~-~~a~~la~~L~ 375 (614)
T PRK12308 300 YGALAGMMMTVKALPL-AYNKDMQED--KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGY-ANATELADYLV 375 (614)
T ss_pred hhHHHHHHHHHcCCch-hhccchhhh--HHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHcCH-HHHHHHHHHHH
Confidence 32222222 44565 489999998 3456678888888999999999999999999999987655 45666666664
Q ss_pred hcCch--hHHHHHHHHhhccccccccHHHHHhhC------CCCHHHHHh--cc-ccCcCcccCc-hHHHHHHHHHHh
Q 009005 470 RYGVP--EPYEKLKELTRGKVVTKESIREFIIGL------ELPEEAKAN--LL-NLTPHNYVGA-AAELARNVDVAV 534 (546)
Q Consensus 470 ~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~~------~l~~~~~~~--l~-~ldP~~~~G~-a~~~v~~~~~~~ 534 (546)
+.|++ +||++|+++++.+...+.++.++..+. .++++..+. ++ .++|..|.|. +++.+++++++.
T Consensus 376 ~~g~~~r~Ah~~v~~~v~~a~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~v~~~~~~~ 452 (614)
T PRK12308 376 AKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCALGGVSPEQVAYAVEQA 452 (614)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHhhhhhhHHHHHhCCHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 43554 999999999987777776666653221 133321111 22 5899999886 999999998666
No 23
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=5.2e-68 Score=555.79 Aligned_cols=332 Identities=20% Similarity=0.183 Sum_probs=285.8
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
++.+|+ +++|+++|||++++++|++||+||+++++ +.|+||++++++|.+ .+..+. .|..++.+.+..++|
T Consensus 11 ~~~~~~--~~~~~~~~s~~~~i~a~l~vE~A~a~a~~---~~G~Ip~~~a~~I~~---a~~~~~-~d~~~~~~~~~~~g~ 81 (351)
T PRK05975 11 LSGLFG--DDEIAALFSAEADIAAMLAFEAALAEAEA---EHGIIPAEAAERIAA---ACETFE-PDLAALRHATARDGV 81 (351)
T ss_pred hhccCC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHH---HhccCC-CCHHHHhhHHHhcCC
Confidence 555787 57999999999999999999999999999 999999877777754 333444 367788888889999
Q ss_pred chhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Q 009005 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (546)
Q Consensus 167 dv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH 246 (546)
++.++++.|++++|+ ++++|||+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|++|||+||||
T Consensus 82 ~v~~~v~~l~~~~g~-----~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~-l~~~L~~l~~~L~~lA~~~~~t~m~grTH 155 (351)
T PRK05975 82 VVPALVRQLRAAVGE-----EAAAHVHFGATSQDVIDTSLMLRLKAASEI-LAARLGALIARLDALEATFGQNALMGHTR 155 (351)
T ss_pred cHHHHHHHHHHHhCc-----hhhCcccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCeeecccC
Confidence 999999999999974 478999999999999999999999999994 99999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccc
Q 009005 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (546)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~ 323 (546)
+|||+|||||||+++|+++|.|+++||.++. ..+++|||+||+++++.. ++.+++++|+.|||+.++ + |+
T Consensus 156 ~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~~~-----~~~~~~~~a~~LGl~~~~-~-~~ 228 (351)
T PRK05975 156 MQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGTLEKLGGK-----AAAVRARLAKRLGLEDAP-Q-WH 228 (351)
T ss_pred CCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccHhccCccCCCc-----HHHHHHHHHHHhCcCCCc-c-hh
Confidence 9999999999999999999999999999986 788999999998765432 346899999999998654 4 55
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhh
Q 009005 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYISL-AYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK 402 (546)
Q Consensus 324 ~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~-G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~ 402 (546)
.+||++++++++++.++++|+|||+|+++|++. |++.++ . ++|||||||||||+.+|++++....++.....+...
T Consensus 229 ~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s~egev~~~--~-~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~~~~~ 305 (351)
T PRK05975 229 SQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAGDEISLS--G-GGGSSAMPHKQNPVAAETLVTLARFNATQVSGLHQA 305 (351)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC--C-CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999754 666553 3 599999999999999999988655444333333444
Q ss_pred cchhhhcccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhcccc
Q 009005 403 LPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQV 444 (546)
Q Consensus 403 l~~~~~erDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~V 444 (546)
++. ++|||...|..+| .+++++..+..++..+..++++|++
T Consensus 306 ~~~-~~er~~~~~~~e~~~lp~~~~~~~~~l~~~~~ll~~l~~ 347 (351)
T PRK05975 306 LVH-EQERSGAAWTLEWMILPQMVAATGAALRLALELAGNIRR 347 (351)
T ss_pred ccc-hhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 444 3799999998887 4578888888899999999988865
No 24
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=3.6e-67 Score=547.67 Aligned_cols=331 Identities=19% Similarity=0.199 Sum_probs=283.5
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
++++|+ +++|+.+|||++++++|+.||+||++||+ +.|+||++.+++|.+ .+..+. .|+.++.+.+..++|
T Consensus 2 ~~~~~~--~~~~~~i~sd~~~i~~~~~ve~A~a~al~---~~Gii~~~~a~~I~~---a~~~~~-~d~~~~~~~~~~~~~ 72 (338)
T TIGR02426 2 LDGLFG--DPAALELFSDRAFLRAMLDFEAALARAQA---DAGLIPAEAAAAIEA---ACAAAA-PDLEALAHAAATAGN 72 (338)
T ss_pred CccccC--CHHHHHHcCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHH---hhccCC-CCHHHHHhHHHhcCC
Confidence 456888 57999999999999999999999999999 999999877777643 334444 367778778888999
Q ss_pred chhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Q 009005 167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (546)
Q Consensus 167 dv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH 246 (546)
++.++|++|++++|+ ++++|||+|+|||||++|+++|++|+++.. +.+.+.+++++|.++|++|++|+|+||||
T Consensus 73 ~~~~~~~~l~~~~g~-----~~g~~vH~G~S~nD~~~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~~~m~grTH 146 (338)
T TIGR02426 73 PVIPLVKALRKAVAG-----EAARYVHRGATSQDVIDTSLMLQLRDALDL-LLADLGRLADALADLAARHRDTPMTGRTL 146 (338)
T ss_pred cHHHHHHHHHHHhCc-----cccCcccCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCceecccC
Confidence 999999999999985 478999999999999999999999999995 99999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccc
Q 009005 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323 (546)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~ 323 (546)
+|||||||||||+++|+++|.|+++||.++. ..+++|||+||.+++ ++.+ ..+++++++.|||+.++.+ ++
T Consensus 147 ~Q~A~P~T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGtg~~~----~~~~-~~v~~~~a~~LGl~~~~~~-~~ 220 (338)
T TIGR02426 147 LQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAAL----GTRG-GAVAAALAARLGLPLPALP-WH 220 (338)
T ss_pred CCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCcchhccCCCc----cchH-HHHHHHHHHHhCcCCCCCc-ch
Confidence 9999999999999999999999999999986 678889999997654 2222 3579999999999987655 56
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh
Q 009005 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM 401 (546)
Q Consensus 324 ~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~ 401 (546)
++||+++|++++++.++++|+|||+|+++|++ +|++.+ .+++|||||||||||+.+|++++.++.+......+..
T Consensus 221 ~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~~e~gei~~---~~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~ 297 (338)
T TIGR02426 221 TQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGEVFE---AGGGGSSAMPHKRNPVGAALLAAAARRVPGLAATLHA 297 (338)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhh---CCCCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999975 777754 5579999999999999999999966644433333333
Q ss_pred hcchhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhcc
Q 009005 402 KLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKL 442 (546)
Q Consensus 402 ~l~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L 442 (546)
.++. .+|||...|..+|. +++++..+..++..+..++++|
T Consensus 298 ~~~~-~~Er~~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 298 ALPQ-EHERSLGGWHAEWETLPELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred hchH-hhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333 47999999998885 4677778888888888887765
No 25
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=3.4e-67 Score=568.24 Aligned_cols=394 Identities=19% Similarity=0.190 Sum_probs=306.0
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-hc-CCcccHHHHHHHHhhhC-----CchhhHHHHHH
Q 009005 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-DG-FNMDDALEVKNIERVTN-----HDVKAVEYFLK 176 (546)
Q Consensus 104 d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~~-~~~~d~~~i~~~~~~~~-----hdv~a~e~~L~ 176 (546)
|.+++++|++||+||++||+ ++|+||++.+++|.+.+..+ +. ++..=+.++.+....++ |++++. .+.
T Consensus 41 ~~~~~~~~l~ve~A~a~al~---~~Giip~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~ 115 (464)
T PRK00485 41 PRELIRALALLKKAAARVNA---ELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIAN--RAS 115 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhCccccCCCcchhhccccccccccHHHHHHH--HHH
Confidence 57899999999999999999 99999998888886433322 21 21000223333333444 444332 333
Q ss_pred HHhhcCch---hhhhcCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcc
Q 009005 177 QKCQSQPE---IAKVLEFFHFACTSEDINNLAHALMLKEAI-NKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252 (546)
Q Consensus 177 e~~g~~~~---~~~~~~~vH~G~TsnDi~dTa~~L~lr~al-~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~P 252 (546)
+..|...+ --..++|||+|+|||||++|+++|++|+++ .. +.+.|.+++++|.++|++|++|+||||||+|||||
T Consensus 116 ~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~-l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P 194 (464)
T PRK00485 116 ELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVER-LLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATP 194 (464)
T ss_pred HhcCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCeeeeeecCcCcee
Confidence 33343100 000578888999999999999999999999 75 99999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCc---cccc
Q 009005 253 TTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIET 325 (546)
Q Consensus 253 tTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~---~~~~ 325 (546)
||||||+++|+++|.|+++||.++. ..+++|| |+||..+....| .+++.+++|+.|||+.++..+ ++.+
T Consensus 195 iTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~pLGg~AvGT~~~~~~~~----~~~v~~~~A~~LGl~~~~~~n~~da~~~ 270 (464)
T PRK00485 195 LTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHPGF----AERVAEELAELTGLPFVTAPNKFEALAA 270 (464)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCccCChhH----HHHHHHHHHHHhCCCCccCcCHHHHHhc
Confidence 9999999999999999999999985 5677766 899954331111 146778999999999644432 5589
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHH
Q 009005 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS 400 (546)
Q Consensus 326 rD~~~e~~~~la~la~~L~kia~Dl~~~~-----s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~ 400 (546)
||+++|++++++.++++|+|||+|+++|+ ++|++.++. +++|||||||||||+.+|++++.+. .+.+.+.
T Consensus 271 rD~~~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~lp~--~~~GSSiMPqKrNP~~~E~ir~~a~---~v~g~~~ 345 (464)
T PRK00485 271 HDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLPE--NEPGSSIMPGKVNPTQCEALTMVCA---QVMGNDA 345 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEcCC--CCCCCCCCCCCCCcHHHHHHHHHHH---HHhhhHH
Confidence 99999999999999999999999999998 389998743 6799999999999999999999655 4555443
Q ss_pred hhc---chhhhcccCCcchhHHhHHhhHHHHHHHHHHHH-HhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCchhH
Q 009005 401 MKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEP 476 (546)
Q Consensus 401 ~~l---~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~-~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~~~A 476 (546)
..+ ....++||...+...|.++..+.....++..+. .++++|+||++||++|++.+++++++.+ ..+|+++|
T Consensus 346 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~La----~~lg~~~A 421 (464)
T PRK00485 346 AVTFAGSQGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALN----PHIGYDKA 421 (464)
T ss_pred HHHHHhccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCeeHHHhc----cccCHHHH
Confidence 222 233478998888778877767777776766666 8999999999999999999988664433 46899999
Q ss_pred HHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCc
Q 009005 477 YEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 477 h~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~ 522 (546)
|++++++.. ++.++++++.+. .+++++++++ +||.+|+|+
T Consensus 422 ~~~~~~a~~----~g~~l~~~~~~~~~l~~~~l~~~--ldP~~~~~~ 462 (464)
T PRK00485 422 AKIAKKAHK----EGLTLKEAALELGYLTEEEFDRW--VDPEKMTGP 462 (464)
T ss_pred HHHHHHHHH----cCCCHHHHHHHcCCCCHHHHHHH--cCHHHhcCC
Confidence 997776543 567888887553 4788878774 999999997
No 26
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=7.6e-67 Score=606.12 Aligned_cols=419 Identities=16% Similarity=0.131 Sum_probs=331.8
Q ss_pred cCcc-CCCCccchHhhcc-------cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHH
Q 009005 87 LDGR-YWSKVKDLAPYMS-------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK 158 (546)
Q Consensus 87 ~~~r-y~~~~~~m~~ifs-------d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~ 158 (546)
--|| +.+.+++++++|+ +++++++|+++|+||++||+ +.|+||++++++|.+....+.+ .+++++.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~---~~gii~~~~a~~I~~~l~~~~~---~~~~~~~ 482 (887)
T PRK02186 409 GAGAARPGLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLG---DTGIVAPERARPLLDAHRRLRD---AGFAPLL 482 (887)
T ss_pred CCCccccCCChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHH---hHHhhCc
Confidence 3344 3445899999999 99999999999999999999 9999999888887532211211 2344443
Q ss_pred HHHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 009005 159 NIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNAN 238 (546)
Q Consensus 159 ~~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~ 238 (546)
......+ +++++|++|++++|+ ++++|+|+|+|||||++|+++|++|+++.. +.+.|..++++|.++|++|++
T Consensus 483 ~~~~~~~-~~~~~e~~L~~~~g~-----~~~~~lH~grSrnD~v~T~~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~ 555 (887)
T PRK02186 483 ARPAPRG-LYMLYEAYLIERLGE-----DVGGVLQTARSRNDINATTTKLHLREATSR-AFDALWRLRRALVFKASANVD 555 (887)
T ss_pred CCCCCcc-hHHHHHHHHHHHhCh-----hhhcccCccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 3333333 559999999999984 479999999999999999999999999995 999999999999999999999
Q ss_pred ccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCC
Q 009005 239 ISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS 315 (546)
Q Consensus 239 t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~ 315 (546)
|+||||||+|||||||||||+++|+++|.|+++||.++. ..+++||++|+.++ +| +| ++++|++|||+
T Consensus 556 ~~m~g~TH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~r~~~~plG~aag~gt~----~~-~~----~~~~a~~LGf~ 626 (887)
T PRK02186 556 CALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTT----FP-ID----PEFVARLLGFE 626 (887)
T ss_pred CEeecCccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccccCCC----CC-CC----HHHHHHHcCCC
Confidence 999999999999999999999999999999999999985 56778888887543 45 45 68899999999
Q ss_pred CCCCC--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhh
Q 009005 316 FNPYV--TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGK 391 (546)
Q Consensus 316 ~~~~~--~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~l 391 (546)
.+..+ .++++||+++|++++++.++++|+|||+|+++|++ ||++.++ +.+++|||||||||||+.+|+++++++
T Consensus 627 ~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i~~~-~~~~~gSSiMPqKrNP~~~E~ir~~~~- 704 (887)
T PRK02186 627 QPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSLP-DALTGGSSMLPQKKNPFLLEFVKGRAG- 704 (887)
T ss_pred CCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEECC-CccccccCCCCCCCCCcHHHHHHHHHH-
Confidence 75433 26789999999999999999999999999999975 9999985 478999999999999999999999665
Q ss_pred hhhHHHHHHhhc---chhhhcccCCcchh-HHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHH
Q 009005 392 ANEDLSFLSMKL---PISRWQRDLTDSTV-LRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTV 467 (546)
Q Consensus 392 a~~~~~~~~~~l---~~~~~erDl~~s~~-~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~ 467 (546)
.+.|++...+ ....+++|...|.. +..+++++..+..++..+..++++|+||++||+++++.++. +|+.++..
T Consensus 705 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~-~at~la~~ 781 (887)
T PRK02186 705 --VVAGALASASAALGKTPFSNSFEAGSPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGV-SATAVAES 781 (887)
T ss_pred --HHhhHHHHHHHHHccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHHHHhcCcc-hHHHHHHH
Confidence 4555543222 12224566555543 33566788888889999999999999999999999999987 55666666
Q ss_pred H-HhcCch--hHHHHHHHHhhccccccccHHHHHhhC--CCCHHHHHhcccc-CcCcccCchHHHHHHHHHHh
Q 009005 468 M-RRYGVP--EPYEKLKELTRGKVVTKESIREFIIGL--ELPEEAKANLLNL-TPHNYVGAAAELARNVDVAV 534 (546)
Q Consensus 468 l-~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~~--~l~~~~~~~l~~l-dP~~~~G~a~~~v~~~~~~~ 534 (546)
| ++.|++ +||++|+++++.+...+..+.+.+.+. .+.+...++. . .-..++|++|+.|+++++.+
T Consensus 782 L~~~~g~~fr~Ah~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~gg~~~~~v~~~~~~~ 852 (887)
T PRK02186 782 LVVRRSISFRSAHTQVGQAIRQSLDQGRSSADALAALDPQFVSRAPLEW--ARSHRFGGGPGAADLNAGLARA 852 (887)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCcccchHHHhhhhhccchHHHH--HHHhhCCCCCCHHHHHHHHHHH
Confidence 6 445665 999999999987766665655554332 1111001111 1 12368999999999998776
No 27
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.5e-66 Score=561.73 Aligned_cols=402 Identities=20% Similarity=0.239 Sum_probs=320.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHH-HHHHHhcCCcccHHHHHHHHhhhCCch-hhHHHHHHHHhh
Q 009005 103 SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVKNIERVTNHDV-KAVEYFLKQKCQ 180 (546)
Q Consensus 103 sd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~-l~~~~~~~~~~d~~~i~~~~~~~~hdv-~a~e~~L~e~~g 180 (546)
-|..++.+.+.+++||+.||+ +.|+||++.+++|.+ +.++...... + .+. ....++|+ +++|++|.+++|
T Consensus 28 ~~~~~~~~~~~~~~Aha~~l~---~~G~l~~~~a~~i~~al~~i~~~~~~-~--~~~--~~~~~~d~~~~ie~~l~~~~g 99 (459)
T PRK00855 28 FDKRLAEEDIAGSIAHARMLA---KQGILSEEEAEKILAGLDEILEEIEA-G--KFE--FSPELEDIHMAIEARLTERIG 99 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhhccc-C--Ccc--cCCCCCcHHHHHHHHHHHHhc
Confidence 356789999999999999999 999999888888743 3222221110 0 010 11246788 999999999998
Q ss_pred cCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHH
Q 009005 181 SQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEIS 260 (546)
Q Consensus 181 ~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la 260 (546)
+ .++|||+|+||||+++|+++|++|+++.. +.+.|.+++++|.++|++|++|+||||||+|||||||||||++
T Consensus 100 ~------~g~~iH~g~SrnD~~~Ta~~L~~r~~l~~-l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~T~G~~l~ 172 (459)
T PRK00855 100 D------VGGKLHTGRSRNDQVATDLRLYLRDEIDE-IAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLL 172 (459)
T ss_pred c------ccCcccCCCCHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCEeecCcCCccceeecHHHHHH
Confidence 4 67899999999999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC--ccccchhHHHHHHHH
Q 009005 261 VFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV--TQIETHDYMAKLFYA 335 (546)
Q Consensus 261 ~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~--~~~~~rD~~~e~~~~ 335 (546)
+|+++|.|+++||.++. ..+++||++|+.. .+| +| +++++++|||+.+..+ .|+.+||++++++++
T Consensus 173 ~~~~~L~r~~~rL~~~~~~~~~~plGgaag~gt----~~~-~~----r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~ 243 (459)
T PRK00855 173 AYAEMLARDLERLRDARKRVNRSPLGSAALAGT----TFP-ID----RERTAELLGFDGVTENSLDAVSDRDFALEFLSA 243 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhhhcCC----CCC-cC----HHHHHHHcCCCCCCCCHHHHHHccHHHHHHHHH
Confidence 99999999999999985 5677888887633 244 33 7889999999974332 167899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHH---hhcchhhhcc
Q 009005 336 FVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS---MKLPISRWQR 410 (546)
Q Consensus 336 la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~---~~l~~~~~er 410 (546)
++.++++|+|||+|+++|++ +|++.++ +.+++|||||||||||+.+|++++.+..+......+. ..++. .|+|
T Consensus 244 l~~la~~L~ria~Dl~l~ss~e~gei~~p-~~~~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~-~~~r 321 (459)
T PRK00855 244 ASLLMVHLSRLAEELILWSSQEFGFVELP-DAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPL-AYNR 321 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCeEeCC-CCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCchH-Hhhh
Confidence 99999999999999999986 7999884 5677999999999999999999996654332222222 33444 4899
Q ss_pred cCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCch--hHHHHHHHHhhccc
Q 009005 411 DLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVP--EPYEKLKELTRGKV 488 (546)
Q Consensus 411 Dl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~~--~Ah~iv~~~~~~a~ 488 (546)
|+++. ...+++++..+..++..+..++++|+||+++|+++++.++.+.++.++.++++ |++ +||++|+++++.+.
T Consensus 322 D~~~~--~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~~l~~~~~~at~la~~Lv~~-gi~~r~Ah~~v~~~~~~a~ 398 (459)
T PRK00855 322 DLQED--KEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAGKGFSTATDLADYLVRK-GVPFREAHEIVGKAVREAE 398 (459)
T ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcchhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 99884 33456788888899999999999999999999999997765555544443354 765 99999999999887
Q ss_pred cccccHHHHHhhC-----CCCHHHHHhccccCcCc-------ccCchHHHHHHHHHHhh
Q 009005 489 VTKESIREFIIGL-----ELPEEAKANLLNLTPHN-------YVGAAAELARNVDVAVN 535 (546)
Q Consensus 489 ~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~-------~~G~a~~~v~~~~~~~~ 535 (546)
.++.+++++..+. .+.++++.. ++||.. .+|++|+.+++.+++.+
T Consensus 399 ~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~r~~~Gg~~~~~~~~~~~~~~ 455 (459)
T PRK00855 399 ERGVDLADLSLEELQAFSPLITEDVYE--VLTPEGSVAARNSIGGTAPEQVREQIARAK 455 (459)
T ss_pred HhCCCHHHHhHHHHHHhcccchHHHHH--HhChHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 7888888765321 222333333 478864 47999999999997764
No 28
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=1.3e-65 Score=554.14 Aligned_cols=384 Identities=21% Similarity=0.188 Sum_probs=302.6
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCccc---HHHHHHHHhhhC-----CchhhHHHHHH
Q 009005 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDD---ALEVKNIERVTN-----HDVKAVEYFLK 176 (546)
Q Consensus 105 ~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d---~~~i~~~~~~~~-----hdv~a~e~~L~ 176 (546)
..++++|++||+||++||+ ++|+||++++++|.+.+..+..-. .| +.++.+.+..++ |+|+++ .|.
T Consensus 39 ~~~i~a~~~ve~A~a~a~~---~~Giip~~~a~~I~~a~~~i~~~~-~~~~~~~~~~~~~~~~~~~m~~~~via~--~l~ 112 (458)
T TIGR00979 39 LELIHAFAILKKAAAIVNE---DLGKLDAKKADAIVQAADEILAGK-LDDHFPLVVWQTGSGTQSNMNVNEVIAN--RAI 112 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcc-ccCCCceecccccccccccccHHHHHHH--HHH
Confidence 6799999999999999999 999999988888864433221111 12 344555666677 777776 889
Q ss_pred HHhhcCchhhhh--cCccc------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccccccccccc
Q 009005 177 QKCQSQPEIAKV--LEFFH------FACTSEDINNLAHALMLKEAI-NKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (546)
Q Consensus 177 e~~g~~~~~~~~--~~~vH------~G~TsnDi~dTa~~L~lr~al-~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~ 247 (546)
+++|. +. ++||| ||+|||||+||+++|++|+++ .. +.+.|.+++++|.++|++|++|+|+||||+
T Consensus 113 e~~g~-----~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~-l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~ 186 (458)
T TIGR00979 113 ELLGG-----KLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQ-LIPALENLKKTLDAKSKEFAHIVKIGRTHL 186 (458)
T ss_pred HHcCc-----ccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeeccccc
Confidence 99974 24 45699 799999999999999999999 55 999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC---
Q 009005 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV--- 320 (546)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~--- 320 (546)
|||||||||||+++|+++|.|+++||.++. ..+++|| |+||+.+.+..| .+++.+++++.|||+.++.+
T Consensus 187 Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~----~~~v~~~~a~~LGl~~~~~~n~~ 262 (458)
T TIGR00979 187 QDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHPGF----DEKVAEEIAKETGLPFVTAPNKF 262 (458)
T ss_pred ccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhcCCccCChhH----HHHHHHHHHHHhCCCCeecCcHH
Confidence 999999999999999999999999999985 5677777 899954432111 13577889999999984433
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhH
Q 009005 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395 (546)
Q Consensus 321 ~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~-----s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~ 395 (546)
.++.+||+++|++++++.++++|+|||+|+++|+ ++|++.++ .+++|||||||||||+.+|.+++.+. .+
T Consensus 263 ~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~p--~~~~GSSiMP~K~NP~~~E~i~~~a~---~v 337 (458)
T TIGR00979 263 EALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIP--ENEPGSSIMPGKVNPTQCEALTMVCV---QV 337 (458)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEECC--CCCCCCCCCCCCcCCHHHHHHHHHHH---HH
Confidence 1558999999999999999999999999999998 48888874 38999999999999999999998544 55
Q ss_pred HHHHHhh---cchhhhcccCCcc--hhHHhHHhhHHHHHHHHHHHH-HhhhccccCHHHHHHHHhhhhhHHHHHHHHHHH
Q 009005 396 LSFLSMK---LPISRWQRDLTDS--TVLRNMGGGLGHSLLAYKSAL-QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMR 469 (546)
Q Consensus 396 ~~~~~~~---l~~~~~erDl~~s--~~~~~l~~~~~~~~~~l~~~~-~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~ 469 (546)
.|..... +....| ++..+ .+.|.++..+.....++..+. .++++|+||++||++|++.+++++++.+ +
T Consensus 338 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~~~t~La----~ 411 (458)
T TIGR00979 338 MGNDATIGFAGSQGNF--ELNVFKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALN----P 411 (458)
T ss_pred HhhHHHHHHHHHhccc--hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHhh----h
Confidence 5554322 222223 33322 233655555555555555555 6999999999999999999998664433 4
Q ss_pred hcCchhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccC
Q 009005 470 RYGVPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVG 521 (546)
Q Consensus 470 ~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G 521 (546)
.+|+++||++++++.. ++.++++++.+. .+++++++++ +||++|+|
T Consensus 412 ~lg~~~A~~~~~~a~~----~~~~~~e~~~~~~~l~~~el~~~--ldp~~~~~ 458 (458)
T TIGR00979 412 HIGYDNAAKIAKKAHK----EGITLKEAALELGLLSEEEFDEW--VVPEQMVG 458 (458)
T ss_pred ccCHHHHHHHHHHHHH----hCCCHHHHHHHcCCCCHHHHHHH--cCHHHhcC
Confidence 6899999997776553 567889887653 4678878774 99999986
No 29
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=2.1e-65 Score=554.62 Aligned_cols=385 Identities=21% Similarity=0.180 Sum_probs=300.9
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHh-cC--CcccHHHHHHHHhhhC----CchhhHHHHHHH
Q 009005 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID-GF--NMDDALEVKNIERVTN----HDVKAVEYFLKQ 177 (546)
Q Consensus 105 ~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~-~~--~~~d~~~i~~~~~~~~----hdv~a~e~~L~e 177 (546)
++++++|++||+||++||+ +.|+||++++++|.+.+..+. .. +..+++...+.+.++. |+++++. .+ +
T Consensus 45 ~~~~~~~l~ve~A~a~al~---~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~-~~-e 119 (472)
T PRK12273 45 PELIRALAMVKKAAALANK---ELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR-AL-E 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccccCCcccchhhccccchhhhHHHHHHHHH-HH-H
Confidence 5799999999999999999 999999988888864332221 11 1124445555556666 5555544 33 7
Q ss_pred HhhcCchhhhhcCc--cc------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccC
Q 009005 178 KCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (546)
Q Consensus 178 ~~g~~~~~~~~~~~--vH------~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~ 249 (546)
++|+ +.++| || +|+|||||++|+++|++|+++.. +.+.|.+++++|.++|++|++|+|+||||+||
T Consensus 120 ~~g~-----~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~ 193 (472)
T PRK12273 120 LLGH-----EKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRK-LLDALEQLQEAFEAKAKEFADILKMGRTQLQD 193 (472)
T ss_pred HhCc-----ccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCEEeecccCcc
Confidence 8874 35677 99 99999999999999999999995 99999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCC----CCc
Q 009005 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP----YVT 321 (546)
Q Consensus 250 A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~----~~~ 321 (546)
|||||||||+++|+++|.|+++||.++. ..+++|| |+||.......+ .+.+.+++|+.|||+.++ ++
T Consensus 194 AqP~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~plGg~AvGT~~~i~~~~----~~~v~~~~A~~LGf~~~~~~n~~d- 268 (472)
T PRK12273 194 AVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNAPPGY----IELVVEKLAEITGLPLVPAEDLIE- 268 (472)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeCCCCCChhH----HHHHHHHHHHHcCCCcccCcCHHH-
Confidence 9999999999999999999999999985 5667766 899953321110 246788999999999633 33
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 322 ~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
++.+||+++|++++++.++++|+|||+|+++|+| +|++.++ .+++|||||||||||+.+|++++.++ .+.
T Consensus 269 a~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~lp--~~~~GSSiMPqKrNP~~~E~ir~~a~---~v~ 343 (472)
T PRK12273 269 ATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP--AVQAGSSIMPGKVNPVIPEVVNQVCF---QVI 343 (472)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEECC--CCCCcCCCCCcccCcHHHHHHHHHHH---HHh
Confidence 6789999999999999999999999999999983 7888874 48999999999999999999998555 455
Q ss_pred HHHH------hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHH-HhhhccccCHHHHHHHHhhhhhHHHHHHHHHHH
Q 009005 397 SFLS------MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMR 469 (546)
Q Consensus 397 ~~~~------~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~-~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~ 469 (546)
|++. .+++.. ++++. +.....++.++..+..++..+. .++++|+||++||++|++.+++++++.+.
T Consensus 344 G~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~LA~---- 416 (472)
T PRK12273 344 GNDTTVTMAAEAGQLE-LNVME--PVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNP---- 416 (472)
T ss_pred hhHHHHHHHHHcCCch-hhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCchHHHHHH----
Confidence 5543 223332 33432 2234445566888888999999 49999999999999999999987766553
Q ss_pred hcCchhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCch
Q 009005 470 RYGVPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 470 ~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~a 523 (546)
.+|++.||+++++ +..++.+++++..+. .++++++++ ++||++|+++.
T Consensus 417 ~L~~~~a~~lv~~----a~~~g~~l~~~~~~~~~l~~~el~~--~ldp~~~v~~~ 465 (472)
T PRK12273 417 YIGYENAAEIAKE----ALETGKSVRELVLERGLLTEEELDD--ILSPENMTHPG 465 (472)
T ss_pred HHHHHHHHHHHHH----HHHhCCCHHHHHhhcCCCCHHHHHH--HcCHHHhCCCC
Confidence 3466666666554 444677888887543 467777776 49999999763
No 30
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=7.1e-65 Score=550.62 Aligned_cols=386 Identities=19% Similarity=0.149 Sum_probs=299.3
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHh--cC-CcccHHHHHHHHhhh----CCchhhHHHHHH
Q 009005 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID--GF-NMDDALEVKNIERVT----NHDVKAVEYFLK 176 (546)
Q Consensus 104 d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~--~~-~~~d~~~i~~~~~~~----~hdv~a~e~~L~ 176 (546)
..+++++|++||+||+++|+ +.|+||++.+++|.+.+..+. .+ +...++...+...++ +|++++ ++|.
T Consensus 42 ~~~~i~a~~~ve~A~a~~l~---~~Glip~~~a~~I~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~--~~l~ 116 (473)
T PRK13353 42 HPELIRAFAQVKKAAALANA---DLGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIA--NRAL 116 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccccCCCCcchhhccccchhcchhhHHHH--HHHH
Confidence 36799999999999999999 999999988888864333221 11 110133344433344 555544 8889
Q ss_pred HHhhcCchhhhhcCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Q 009005 177 QKCQSQPEIAKVLEF--------FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (546)
Q Consensus 177 e~~g~~~~~~~~~~~--------vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q 248 (546)
+++|+ +.++| ||+|+|||||++|+++|++|+++.. +.+.|.+++++|.++|++|++|+|+||||+|
T Consensus 117 e~~g~-----~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~~-l~~~L~~l~~~L~~~A~~~~~~im~GrTH~Q 190 (473)
T PRK13353 117 ELLGG-----EKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLEG-LLAAMGALQDVFEEKAAEFDHVIKMGRTQLQ 190 (473)
T ss_pred HHhCc-----cccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeeccccCc
Confidence 99975 35664 9999999999999999999999995 9999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC---c
Q 009005 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV---T 321 (546)
Q Consensus 249 ~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~---~ 321 (546)
||||||||||+++|+++|.|+++||.++. ..+++|| |+||..... ++. ..++.+++++.|||+.++.. .
T Consensus 191 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~AvGT~~~~~---~~~-~~~~~~~la~~LG~~~~~~~n~~~ 266 (473)
T PRK13353 191 DAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNAD---PEY-IERVVKHLAAITGLPLVGAEDLVD 266 (473)
T ss_pred cceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccCC---hhH-HHHHHHHHHHHhCCCCccccchHh
Confidence 99999999999999999999999999985 5666776 899953221 110 13567789999999964322 1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 322 ~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~-----s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
++++||++++++++++.++++|+|||+|+++|+ ++|++.++ .+++|||||||||||+.+|.+++.+. .+.
T Consensus 267 a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~lp--~~~~GSSiMPqKrNP~~~E~ir~~a~---~v~ 341 (473)
T PRK13353 267 ATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLP--AVQPGSSIMPGKVNPVMPEVVNQIAF---QVI 341 (473)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEECC--CCCCCCCCCCCCcCChHHHHHHHHHH---HHH
Confidence 567899999999999999999999999999998 68999874 39999999999999999999998555 555
Q ss_pred HHHHh------hcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHH-HhhhccccCHHHHHHHHhhhhhHHHHHHHHHHH
Q 009005 397 SFLSM------KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMR 469 (546)
Q Consensus 397 ~~~~~------~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~-~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~ 469 (546)
|++.. +++.. ++++ .+.....++.++..+..++..+. .++++|+||++||++|++.+++++++.+..
T Consensus 342 g~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~~~~~l~t~La~~--- 415 (473)
T PRK13353 342 GNDVTITLAAEAGQLE-LNVM--EPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPH--- 415 (473)
T ss_pred hHHHHHHHHHHcCChh-hhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHHHH---
Confidence 55432 22332 2232 12223333444544454555555 799999999999999999999877665543
Q ss_pred hcCchhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCc
Q 009005 470 RYGVPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 470 ~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~ 522 (546)
+ +|++|+++++.+..++.++++++.+. .+++++++++ +||..|+++
T Consensus 416 -L----gh~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~el~~~--ldp~~~v~~ 462 (473)
T PRK13353 416 -I----GYEAAARIAKEAIATGRSVRELALENGLLSEEELDLI--LDPFRMTHP 462 (473)
T ss_pred -H----HHHHHHHHHHHHHHhCCCHHHHHhhcCCCCHHHHHHH--cCHHHhcCC
Confidence 2 58999998888777788999987653 3677777774 999999975
No 31
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=5.3e-64 Score=541.19 Aligned_cols=378 Identities=20% Similarity=0.159 Sum_probs=293.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHh--cC-CcccHHHHHHHHhhh----CCchhhHHHHH
Q 009005 103 SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID--GF-NMDDALEVKNIERVT----NHDVKAVEYFL 175 (546)
Q Consensus 103 sd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~--~~-~~~d~~~i~~~~~~~----~hdv~a~e~~L 175 (546)
.|++++++|+.||+||++||+ +.|+||++++++|.+.+..+. .+ +...++...+...++ .|++++.. +
T Consensus 36 ~d~~~i~~~l~ve~A~a~al~---~~Giip~~~a~~I~~al~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~--~ 110 (450)
T cd01357 36 IHPELIRALAMVKKAAALANA---ELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR--A 110 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccccCCCccchhhccccchhhhhHhHHHHHH--H
Confidence 478899999999999999999 999999988888854332221 12 111133444444444 66666655 4
Q ss_pred HHHhhcCchhhhhcCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Q 009005 176 KQKCQSQPEIAKVLEF--------FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (546)
Q Consensus 176 ~e~~g~~~~~~~~~~~--------vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~ 247 (546)
.+++|+ ++++| ||+|+||||+++|+++|++|+++.. +.+.|.+++++|.++|++|++|+|+||||+
T Consensus 111 ~e~~g~-----~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~ 184 (450)
T cd01357 111 LELLGH-----EKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRK-LLDALAALQEAFQAKAREFADVLKMGRTQL 184 (450)
T ss_pred HHHhCc-----cccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCEeeccccC
Confidence 788874 35776 9999999999999999999999995 999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCC-C--
Q 009005 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPY-V-- 320 (546)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~-~-- 320 (546)
|||||||||||+++|+++|.|+++||.++. ..+++|| |+||....+..+ .+.+++++++.|||+.++. +
T Consensus 185 Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~AvGt~~~~~~~~----~~~v~~~~a~~LGl~~~~~~n~~ 260 (450)
T cd01357 185 QDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGY----IELVVEKLSEITGLPLKRAENLI 260 (450)
T ss_pred cccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeCCCCCChhH----HHHHHHHHHHHhCCCCccCcCHH
Confidence 999999999999999999999999999985 5677776 899954321111 2467889999999996332 2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhH
Q 009005 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395 (546)
Q Consensus 321 ~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~ 395 (546)
.++++||++++++++++.++++|+|||+|+++|+| +|++.++ .+++|||||||||||+.+|++++.+. .+
T Consensus 261 ~a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~p--~~~~GSSiMPqKrNP~~~E~ir~~a~---~v 335 (450)
T cd01357 261 DATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP--AVQPGSSIMPGKVNPVIPEVVNQVAF---QV 335 (450)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEECC--CCCCcCCCCCCCcCcHHHHHHHHHHH---HH
Confidence 26689999999999999999999999999999983 7888874 59999999999999999999998555 45
Q ss_pred HHHHHh------hcchhhhcccCCcchhHHhHHhhHHHHHHHHHHH-HHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH
Q 009005 396 LSFLSM------KLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM 468 (546)
Q Consensus 396 ~~~~~~------~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~-~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l 468 (546)
.+.+.. +++.. ++++. +.....++.++..+..++..+ ..++++|+||++||++|++.+++++++.+.
T Consensus 336 ~g~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~La~--- 409 (450)
T cd01357 336 IGNDLTITMAAEAGQLE-LNVFE--PVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNP--- 409 (450)
T ss_pred hhHHHHHHHHHhcCcch-hhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHHH---
Confidence 554322 22322 23322 223445556677888899999 499999999999999999999987755443
Q ss_pred HhcCchhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhc
Q 009005 469 RRYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANL 511 (546)
Q Consensus 469 ~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l 511 (546)
.+|++.||+++++ +...+.++++++.+.. +++++++++
T Consensus 410 -~lg~~~a~~~~~~----a~~~g~~l~e~~~~~~~l~~~el~~~ 448 (450)
T cd01357 410 -YIGYEAAAEIAKE----ALETGRSVRELVLEEGLLTEEELDEI 448 (450)
T ss_pred -HHHHHHHHHHHHH----HHHhCCCHHHHHHhcCCCCHHHHHHH
Confidence 4576677775554 3345678888876543 677777663
No 32
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=100.00 E-value=5.2e-64 Score=542.00 Aligned_cols=391 Identities=18% Similarity=0.121 Sum_probs=301.0
Q ss_pred cccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH-HHhcCCcccHHHHHHHHhhhC-------CchhhHHH
Q 009005 102 MSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMDDALEVKNIERVTN-------HDVKAVEY 173 (546)
Q Consensus 102 fsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~-~~~~~~~~d~~~i~~~~~~~~-------hdv~a~e~ 173 (546)
...++++++|++||.||++||+ +.|+||++++++|.+.+. .++.-...+...+......+| |+|++ .
T Consensus 37 ~~~~~~i~~~l~ve~A~a~al~---e~GiIp~~~a~~I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie--~ 111 (468)
T TIGR00839 37 SDIPEFVRGMVMVKKAAALANK---ELGTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIA--N 111 (468)
T ss_pred CchHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccccccccHHHccCccccccchHHHHH--H
Confidence 3457899999999999999999 999999999998864332 222000002334555556666 55544 4
Q ss_pred HHHHHhhcCchhhhhcCcccc--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Q 009005 174 FLKQKCQSQPEIAKVLEFFHF--------ACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245 (546)
Q Consensus 174 ~L~e~~g~~~~~~~~~~~vH~--------G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRT 245 (546)
.|.+++|. +.++|+|| |+||||+++|+++|++|+++.. +.+.|.+++++|.++|++|++|+|+|||
T Consensus 112 ~l~e~~g~-----~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grT 185 (468)
T TIGR00839 112 LALELMGH-----QKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLIK-LVDAINQLRDGFEQKAKEFADILKMGRT 185 (468)
T ss_pred HHHHHhCc-----cccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeeccc
Confidence 58999974 37899996 9999999999999999999995 9999999999999999999999999999
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCc
Q 009005 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT 321 (546)
Q Consensus 246 H~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~ 321 (546)
|+|||||||||||+++|+++|.|+++||.++. ..+++|| |+||..+.+..+ .+.+++++|+.|||+.++...
T Consensus 186 H~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~----~~~v~~~~a~~LGl~~~~~~n 261 (468)
T TIGR00839 186 QLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPEY----SPLVVKKLAEVTGLPCVPAEN 261 (468)
T ss_pred cCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeCCCcCChhH----HHHHHHHHHHHhCCCCCCCcc
Confidence 99999999999999999999999999999985 5677776 889953321100 246889999999999753221
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhh
Q 009005 322 ---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKAN 393 (546)
Q Consensus 322 ---~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~ 393 (546)
++.+||+++|++++++.++++|+|||+|+++|+| +|++.++ .+++|||||||||||+.+|.+++.+.
T Consensus 262 ~~da~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~--~~~~gSS~MPqKrNP~~~E~ir~~a~--- 336 (468)
T TIGR00839 262 LIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP--ELQAGSSIMPAKVNPVVPEVVNQVCF--- 336 (468)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCC--CCCCCCCCCCCCcCcHHHHHHHHHHH---
Confidence 5578999999999999999999999999999984 5667764 58999999999999999999998444
Q ss_pred hHHHHHHhhcchhhhcccCCcchhHH----hHHhhHHHHHHHHH-HHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH
Q 009005 394 EDLSFLSMKLPISRWQRDLTDSTVLR----NMGGGLGHSLLAYK-SALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM 468 (546)
Q Consensus 394 ~~~~~~~~~l~~~~~erDl~~s~~~~----~l~~~~~~~~~~l~-~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l 468 (546)
.+.+.+...+... ...+++.|..+| .++.++..+..++. .+..++++|+||++||++|++.+++++++.+
T Consensus 337 ~~~g~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~~~~~~~La---- 411 (468)
T TIGR00839 337 KVIGNDTTVTLAA-EAGQLQLNVMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLN---- 411 (468)
T ss_pred HHHhHHHHHHHHH-hcCChHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhHHHHHHHh----
Confidence 5666543332211 123333444444 34445566666665 4778999999999999999999888774433
Q ss_pred HhcCchhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCch
Q 009005 469 RRYGVPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 469 ~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~a 523 (546)
+..|++.||++++++ ..++.+++++.... .+++++++. ++||++|+++.
T Consensus 412 ~~~g~~~a~~~~~~a----~~~g~~l~e~~~~~~~l~~~~l~~--~ldP~~~v~~~ 461 (468)
T TIGR00839 412 PFIGHHNGDIVGKIC----AETGKSVREVVLEKGLLTEEELDD--IFSVENLMHPA 461 (468)
T ss_pred hHhhHHHHHHHHHHH----HHhCCCHHHHHHhcCCCCHHHHHH--HcCHHHHcCCC
Confidence 445777777776543 34567888887553 467777777 49999999864
No 33
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.8e-63 Score=537.44 Aligned_cols=391 Identities=19% Similarity=0.162 Sum_probs=291.3
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-hc-CCcccHHHHHHHHhhhC-----CchhhHHHHHH
Q 009005 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-DG-FNMDDALEVKNIERVTN-----HDVKAVEYFLK 176 (546)
Q Consensus 104 d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~~-~~~~d~~~i~~~~~~~~-----hdv~a~e~~L~ 176 (546)
++.++++|++||.||+++|+ +.|+||++++++|...+..+ +. ++..=+.++......++ |++++ .+++
T Consensus 37 ~~~~i~~~l~ve~A~a~al~---~~GiIp~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~--~~~~ 111 (455)
T cd01362 37 PRELIRALGLLKKAAAQANA---ELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSGTQTNMNVNEVIA--NRAI 111 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccCCceehhhccccccccccHHHHHH--HHHH
Confidence 47899999999999999999 99999998888885433322 21 21000222333333444 44433 3333
Q ss_pred HHhhcCchh---hhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccc
Q 009005 177 QKCQSQPEI---AKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPT 253 (546)
Q Consensus 177 e~~g~~~~~---~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~Pt 253 (546)
+..|+.... -+.++|||+|+|||||+||+++|++|+++..++.+.|.+++++|.++|++|++|+|+||||+||||||
T Consensus 112 ~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~ 191 (455)
T cd01362 112 ELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPL 191 (455)
T ss_pred HhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCCCCeee
Confidence 444521000 03578999999999999999999999999535999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCc---cccch
Q 009005 254 TLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETH 326 (546)
Q Consensus 254 TfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~---~~~~r 326 (546)
|||||+++|+++|.|+++||.++. ..+++|| |+||..+.+..+ .+.+.+++|+.|||+.++..+ ++.+|
T Consensus 192 TfG~~~~~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~----~~~v~~~~a~~LGl~~~~~~n~~da~~~r 267 (455)
T cd01362 192 TLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGF----AEKVAAELAELTGLPFVTAPNKFEALAAH 267 (455)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCeeccCCccCChhH----HHHHHHHHHHHhCCCCccCCCHHHHHhCC
Confidence 999999999999999999999985 6778877 899954432111 135778999999999654332 55889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHH-
Q 009005 327 DYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS- 400 (546)
Q Consensus 327 D~~~e~~~~la~la~~L~kia~Dl~~~~-----s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~- 400 (546)
|++++++++++.++++|+|||+|+++|+ ++|++.++ .+++|||||||||||+.+|++++.+. .+.|.+.
T Consensus 268 D~~~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~gev~~~--~~~~GSS~MPqKrNP~~~E~ir~~a~---~~~g~~~~ 342 (455)
T cd01362 268 DALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLP--ENEPGSSIMPGKVNPTQCEALTMVAA---QVMGNDAA 342 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCCceEECC--CCCCCCCCCCCCCCcHHHHHHHHHHH---HHhhhHHH
Confidence 9999999999999999999999999998 48999874 37999999999999999999998554 4545432
Q ss_pred --hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHH-HHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCchhHH
Q 009005 401 --MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPY 477 (546)
Q Consensus 401 --~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~-~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~~~Ah 477 (546)
..+..+.|+...-.....|.++..+..+..++..+ ..++++|+||++||++|++.+++++++.+ ..+|+.+||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l~~~~~~~~~La----~~ig~~~A~ 418 (455)
T cd01362 343 ITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALN----PHIGYDKAA 418 (455)
T ss_pred HHHHHhcCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcchhHHHhc----cccCHHHHH
Confidence 22223333211111112344444555555555544 59999999999999999999988764433 368999999
Q ss_pred HHHHHHhhccccccccHHHHHhh-CCCCHHHHHhccccCcCc
Q 009005 478 EKLKELTRGKVVTKESIREFIIG-LELPEEAKANLLNLTPHN 518 (546)
Q Consensus 478 ~iv~~~~~~a~~~~~~l~e~~~~-~~l~~~~~~~l~~ldP~~ 518 (546)
++++++. .++.++++++.. ..+++++++. ++||.+
T Consensus 419 ~l~~~a~----~~~~~l~~~~~~~~~~~~~el~~--~~dp~~ 454 (455)
T cd01362 419 KIAKKAH----KEGLTLKEAALELGYLTEEEFDR--LVDPEK 454 (455)
T ss_pred HHHHHHH----HcCCCHHHHHHhcCCCCHHHHHH--hcCccc
Confidence 9977654 356788888754 3467777776 499975
No 34
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=3.1e-63 Score=535.56 Aligned_cols=389 Identities=18% Similarity=0.142 Sum_probs=297.5
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH-HHhcCCcccHHHHHH----HHhhhCCch-hhHHHHHHHH
Q 009005 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMDDALEVKN----IERVTNHDV-KAVEYFLKQK 178 (546)
Q Consensus 105 ~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~-~~~~~~~~d~~~i~~----~~~~~~hdv-~a~e~~L~e~ 178 (546)
..++++++.|++||++|+. +.|+||++.+++|.+.+. +.+.... +--.+.. ....++.+| ..+|+++.++
T Consensus 34 ~~~i~a~~~v~~A~a~~l~---~~G~l~~~~a~~I~~al~ei~~~~~~-~~f~~~~~~~g~g~~~~~~v~evie~~l~e~ 109 (458)
T PLN00134 34 EPIVRAFGIVKKAAAKVNM---EYGLLDPDIGKAIMQAADEVAEGKLD-DHFPLVVWQTGSGTQTNMNANEVIANRAAEI 109 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCccc-CCccccccccCCcccccCcHHHHHHHHHHHH
Confidence 6799999999999999999 999999988888854333 2221110 1000111 011124466 6699999999
Q ss_pred hhcCchhhhhcCc--cc------cCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccccccccccC
Q 009005 179 CQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEA-INKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (546)
Q Consensus 179 ~g~~~~~~~~~~~--vH------~G~TsnDi~dTa~~L~lr~a-l~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~ 249 (546)
+|. +.|+| +| +|+|||||++|+++|++|+. +.. +.+.|.+++++|.++|++|++|+|+||||+||
T Consensus 110 ~g~-----~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~ 183 (458)
T PLN00134 110 LGG-----PVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSR-LIPALKELHESLRAKSFEFKDIVKIGRTHLQD 183 (458)
T ss_pred hCc-----ccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccccccccCC
Confidence 985 35666 77 99999999999999999944 775 99999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCc---c
Q 009005 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---Q 322 (546)
Q Consensus 250 A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~---~ 322 (546)
|||||||||+++|+++|.|+++||.++. ..+++|| |+||.......| .+++.+++++.|||+.++..+ +
T Consensus 184 A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~----~~~v~~~la~~LGl~~~~~~n~~da 259 (458)
T PLN00134 184 AVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGF----DEKIAAAVAEETGLPFVTAPNKFEA 259 (458)
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCccCChhH----HHHHHHHHHHHhCCCCCCCccHHHH
Confidence 9999999999999999999999999985 5666776 899853321111 246788999999999864332 4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHH
Q 009005 323 IETHDYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397 (546)
Q Consensus 323 ~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~-----s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~ 397 (546)
+.+||++++++++++.++++|+|||+|+++|+ ++|++.++ ..++|||||||||||+.+|.+++.+. .+.|
T Consensus 260 ~~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~lp--~~~~GSSiMP~KrNPv~~E~i~~~a~---~v~g 334 (458)
T PLN00134 260 LAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLP--ENEPGSSIMPGKVNPTQCEALTMVCA---QVMG 334 (458)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEECC--CCCCCCCCCCCCcCCHHHHHHHHHHH---HHHh
Confidence 58999999999999999999999999999998 58888874 35799999999999999999998544 5666
Q ss_pred HHHhhc---chhhhcccCCcchhHHhHHhhHHHHHHHHHHH-HHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCc
Q 009005 398 FLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGV 473 (546)
Q Consensus 398 ~~~~~l---~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~-~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~ 473 (546)
.....+ ....|+......-+.|.++..+..+..++..+ ..++++|+||++||++|++.+++++++.+ +.+|+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~~~La----~~ig~ 410 (458)
T PLN00134 335 NHVAITVGGSAGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALN----PKIGY 410 (458)
T ss_pred HHHHHHHHHhcCCchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchHHHhh----hccCH
Confidence 543322 11122221111112344444444455555544 68999999999999999999998774332 57999
Q ss_pred hhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCc
Q 009005 474 PEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 474 ~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~ 522 (546)
++||++++++.. ++.++++++.+. .+++++++++ +||++|+|+
T Consensus 411 ~~A~~~~~~a~~----~g~~l~e~~~~~~~l~~~el~~~--ldP~~~~~~ 454 (458)
T PLN00134 411 DKAAAVAKKAHK----EGTTLKEAALKLGVLTAEEFDEL--VVPEKMTGP 454 (458)
T ss_pred HHHHHHHHHHHH----hCCCHHHHHHhcCCCCHHHHHHH--cCHHHhcCC
Confidence 999997776654 567899988654 4788888874 999999986
No 35
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=1.2e-62 Score=531.45 Aligned_cols=390 Identities=18% Similarity=0.148 Sum_probs=294.9
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHH-HHHHHhcCCcccHHHHHHHHhhhCCch-hhHHHH----HHHH
Q 009005 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVKNIERVTNHDV-KAVEYF----LKQK 178 (546)
Q Consensus 105 ~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~-l~~~~~~~~~~d~~~i~~~~~~~~hdv-~a~e~~----L~e~ 178 (546)
..+|+++..|.+||++|+. +.|+||++.+++|.+ +.++.+......+ .+.-.....+.|+ ++++.. +.++
T Consensus 40 ~~~i~a~~~ik~Aha~~l~---~~G~l~~~~~~~I~~al~ei~~~~~~~~f-~~~~~~~g~~ed~~mnvnevi~~~~~e~ 115 (464)
T PRK12425 40 LAVLHALALIKKAAARVND---RNGDLPADIARLIEQAADEVLDGQHDDQF-PLVVWQTGSGTQSNMNVNEVIAGRANEL 115 (464)
T ss_pred HHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCC-CccCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6799999999999999999 999999988888853 3333222211111 0100112236688 898544 4555
Q ss_pred hhcCchhhhhcCc--------cccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccccccccccccC
Q 009005 179 CQSQPEIAKVLEF--------FHFACTSEDINNLAHALMLKEAI-NKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249 (546)
Q Consensus 179 ~g~~~~~~~~~~~--------vH~G~TsnDi~dTa~~L~lr~al-~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~ 249 (546)
+|. +.|++ ||+|+||||+++|+++|++|+++ .. +.+.|.+++++|.++|++|++|+|+||||+||
T Consensus 116 ~G~-----~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~-l~~~L~~l~~~L~~~A~~~~~tim~GrTHlQ~ 189 (464)
T PRK12425 116 AGN-----GRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQ-LLPAIAELSGGLAEQSARHAKLVKTGRTHMMD 189 (464)
T ss_pred hCc-----ccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeeccccccc
Confidence 554 24555 99999999999999999999999 56 99999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHhh---hcc-cccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCc---c
Q 009005 250 ASPTTLGKEISVFAIRLGRERQEISQVE---IMG-KFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---Q 322 (546)
Q Consensus 250 A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g-~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~---~ 322 (546)
||||||||||++|+++|.|+++||.++. ..+ .++||+||...... ++ ++.+.+.+++.|||+.++..+ +
T Consensus 190 A~PiT~G~~~~a~~~~l~rd~~RL~~~~~r~~~~plGggAvGT~~~~~~---~~-~~~~~~~La~~LG~~~~~~~n~~da 265 (464)
T PRK12425 190 ATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPH---GF-AEAIAAELAALSGLPFVTAPNKFAA 265 (464)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccCCc---cH-HHHHHHHHHHHhCCCCcccccHHHH
Confidence 9999999999999999999999999985 222 44688999432211 11 356788889999999854332 5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHH
Q 009005 323 IETHDYMAKLFYAFVRFNNILIDFDRDVWGYI---SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (546)
Q Consensus 323 ~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~---s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~ 399 (546)
+++||+++|++++++.++++|+|||+|+++|+ ++|+.++..+..++||||||||+||+.+|.+++.+. .+.|+.
T Consensus 266 ~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~~~~GSSiMPqK~NP~~~E~i~~~a~---~v~G~~ 342 (464)
T PRK12425 266 LAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLAC---QVMGND 342 (464)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCCCCCCCCCCCCCcCCHHHHHHHHHHH---HHHhHH
Confidence 68999999999999999999999999999998 444443334566999999999999999999998544 666665
Q ss_pred HhhcchhhhcccCCcch----hHHhHHhhHHHHH-HHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCc
Q 009005 400 SMKLPISRWQRDLTDST----VLRNMGGGLGHSL-LAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM-RRYGV 473 (546)
Q Consensus 400 ~~~l~~~~~erDl~~s~----~~~~l~~~~~~~~-~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~ 473 (546)
...+... -+++++... +...++..+.... .++..+..++++|+||++||++|++.++.++ +.| +.+|+
T Consensus 343 ~~v~~~~-~~~~~q~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~~~~~a-----t~L~~~ig~ 416 (464)
T PRK12425 343 ATIGFAA-SQGHLQLNVFKPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLV-----TALNPHIGY 416 (464)
T ss_pred HHHHHHH-hcCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcccHHH-----HHhhhccCH
Confidence 4333221 124444321 1223334444444 4455566999999999999999999977645 445 57999
Q ss_pred hhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCch
Q 009005 474 PEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 474 ~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~a 523 (546)
++||++++++.. ++.++++++.+. .+++++++++ +||.+|+|+.
T Consensus 417 ~~A~~ia~~a~~----~g~~l~e~~~~~~~l~~~el~~~--ldP~~~~~~~ 461 (464)
T PRK12425 417 DKAAEIAKKAYA----EGTTLREAALALGYLTDEQFDAW--VRPENMLEAG 461 (464)
T ss_pred HHHHHHHHHHHH----hCCCHHHHHHhcCCCCHHHHHHH--cCHHHhcCCC
Confidence 999988876654 578899988654 4788888874 9999999865
No 36
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=8.6e-63 Score=513.02 Aligned_cols=314 Identities=27% Similarity=0.274 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHH-HHHhhhCCchhhHHHHHHHHhhcCchhh
Q 009005 108 IYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK-NIERVTNHDVKAVEYFLKQKCQSQPEIA 186 (546)
Q Consensus 108 ~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~-~~~~~~~hdv~a~e~~L~e~~g~~~~~~ 186 (546)
+++|+.+|+||+++|+ +.|+||+++++.|.+.+..+. . |.++.. ..+..++|+++++|++|++++|+
T Consensus 1 ~~~~l~ve~A~a~al~---~~Gli~~~~a~~I~~~l~~~~-~---~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~----- 68 (325)
T cd01334 1 IRADLQVEKAHAKALA---ELGLLPKEAAEAILAALDEIL-E---GIAADQVEQEGSGTHDVMAVEEVLAERAGE----- 68 (325)
T ss_pred CHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHH-h---CccccCeeeCCCCccHHHHHHHHHHHHhcc-----
Confidence 4789999999999999 999999888888764333221 1 233332 45677889999999999999986
Q ss_pred hhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHH
Q 009005 187 KVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266 (546)
Q Consensus 187 ~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L 266 (546)
+.++|+|+|+|||||++|+++|++|+++.. +.+.|.+++++|.++|.+|++|+||||||+|||||||||||+++|+++|
T Consensus 69 ~~~~~lH~G~S~nDi~~ta~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l 147 (325)
T cd01334 69 LNGGYVHTGRSSNDIVDTALRLALRDALDI-LLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAEL 147 (325)
T ss_pred ccCCCCccCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCcEeecccccccCccccHHHHHHHHHHHH
Confidence 359999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---hccccc-ccccCccccccCCCCCChhhHHHHHHHHcCCCCC---CCCccccchhHHHHHHHHHHHH
Q 009005 267 GRERQEISQVE---IMGKFA-GAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFN---PYVTQIETHDYMAKLFYAFVRF 339 (546)
Q Consensus 267 ~R~~~rL~~~~---~~g~~g-GAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~---~~~~~~~~rD~~~e~~~~la~l 339 (546)
.|+++||.++. ..+++| ||+||.+.. .| .+++++|+.|||..+ +|+ ++++||+++|++++++.+
T Consensus 148 ~r~~~rL~~~~~~~~~~~lG~gA~g~~~~~---~~-----~~~~~~a~~LG~~~~~~~~~~-a~~~rd~~~e~~~~l~~~ 218 (325)
T cd01334 148 ERDLERLEEALKRLNVLPLGGGAVGTGANA---PP-----IDRERVAELLGFFGPAPNSTQ-AVSDRDFLVELLSALALL 218 (325)
T ss_pred HHHHHHHHHHHHHhhhcCCcHhHHhCcCCC---Cc-----chHHHHHHHhcCcCcCcCHHH-HHhCcHHHHHHHHHHHHH
Confidence 99999999985 567777 899885432 13 358999999999443 333 478999999999999999
Q ss_pred HHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhcchhhhcccCCcchh
Q 009005 340 NNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTV 417 (546)
Q Consensus 340 a~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l~~~~~erDl~~s~~ 417 (546)
+++|+|||+|+++|++ +|++.++.. .++|||||||||||+.+|++++.+..+......+...+.. .+++|..+|..
T Consensus 219 ~~~l~ria~Dl~~~~~~e~gev~~~~~-~~~gSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~-~~~~~~~~~~~ 296 (325)
T cd01334 219 AVSLSKIANDLRLLSSGEFGEVELPDA-KQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKG-GPLEDNVDSPV 296 (325)
T ss_pred HHHHHHHHHHHHHHcCCCCCeEECCCC-CCCCcccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHhc-CchhhhcccHH
Confidence 9999999999999986 999998554 4999999999999999999999666433333333333333 35788999987
Q ss_pred HH-hHHhhHHHHHHHHHHHHHhhhccccC
Q 009005 418 LR-NMGGGLGHSLLAYKSALQGIAKLQVN 445 (546)
Q Consensus 418 ~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn 445 (546)
.| .+++++..+..+++.+..++++|+||
T Consensus 297 ~~~~l~~~~~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 297 EREALPDSFDLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence 66 56788888899999999999999987
No 37
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.1e-61 Score=522.34 Aligned_cols=379 Identities=21% Similarity=0.181 Sum_probs=281.9
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCccc---HHHHHHHHhhhCCch-hhHHH----HH
Q 009005 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDD---ALEVKNIERVTNHDV-KAVEY----FL 175 (546)
Q Consensus 104 d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d---~~~i~~~~~~~~hdv-~a~e~----~L 175 (546)
+++++++|+.||+||++||+ +.|+||++++++|...+..+..-. .| +.++......+ |+ ++++. .+
T Consensus 37 ~~~~i~~~l~ve~A~a~al~---~~Giip~~~a~~I~~~l~~i~~~~-~~~~~~~~~~~~~~~~--~~~~~v~~~i~~~~ 110 (450)
T cd01596 37 PPELIRALALVKKAAALANA---ELGLLDEEKADAIVQACDEVIAGK-LDDQFPLDVWQTGSGT--STNMNVNEVIANRA 110 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCc-ccCCCcccHHhccCcc--cccchHHHHHHHHH
Confidence 47899999999999999999 999999988888854332221101 11 11222222222 32 33333 33
Q ss_pred HHHhhcCchhhhhcCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Q 009005 176 KQKCQSQPEIAKVLEF--------FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (546)
Q Consensus 176 ~e~~g~~~~~~~~~~~--------vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~ 247 (546)
.+++|. ..++| +|+|+|||||++|+++|++|+++.. +.+.|.+++++|.++|++|++|+||||||+
T Consensus 111 ~~~~g~-----~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~-l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 184 (450)
T cd01596 111 LELLGG-----KKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLER-LLPALEQLQDALDAKAEEFADIVKIGRTHL 184 (450)
T ss_pred HHHhcc-----ccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 366663 25777 7799999999999999999999995 999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC---
Q 009005 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV--- 320 (546)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~--- 320 (546)
|||||||||||+++|+++|.|+++||..+. ..+++|| |+||+.+....+ ...+++++|++|||+.++..
T Consensus 185 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGg~A~Gt~~~~~~~~----~~~v~~~~a~~LGl~~~~~~n~~ 260 (450)
T cd01596 185 QDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPPGY----AEKVAAELAELTGLPFVTAPNLF 260 (450)
T ss_pred cCCeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcceeCCCCCChhH----HHHHHHHHHHHhCCCCccCcCHH
Confidence 999999999999999999999999999985 5677776 889853321111 24678999999999964332
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhH
Q 009005 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395 (546)
Q Consensus 321 ~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~-----s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~ 395 (546)
.|+.+||++++++++++.++++|+|||+|+++|+ ++|++.++. +++|||||||||||+.+|++++.+. .+
T Consensus 261 d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~gev~~~~--~~~GSS~MPqKrNP~~~E~ir~~a~---~~ 335 (450)
T cd01596 261 EATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLPA--NQPGSSIMPGKVNPVIPEAVNMVAA---QV 335 (450)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCeeEECCC--CCCCCCCCCCCCCCHHHHHHHHHHH---HH
Confidence 2668999999999999999999999999999998 489998743 8999999999999999999998544 55
Q ss_pred HHHHHhhc---chhhhcccCCcchhHHhHHhhHHHHHHHHHHHH-HhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhc
Q 009005 396 LSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRY 471 (546)
Q Consensus 396 ~~~~~~~l---~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~-~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~ 471 (546)
.|.+...+ ....++|....+.....++..+..+..++..+. .++++|+||++||++|++.++.+.++.+. .+
T Consensus 336 ~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~t~LA~----~l 411 (450)
T cd01596 336 IGNDTAITMAGSAGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNP----HI 411 (450)
T ss_pred hccHHHHHHHhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHhH----HH
Confidence 55443222 222345522222211124444545555555555 99999999999999999999987755543 34
Q ss_pred CchhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhc
Q 009005 472 GVPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANL 511 (546)
Q Consensus 472 G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l 511 (546)
|++.||++++++. ..+.+++++..+. .+++++++++
T Consensus 412 g~~~a~~~v~~a~----~~g~~l~~~~~~~~~~~~~~l~~~ 448 (450)
T cd01596 412 GYEKAAEIAKEAL----KEGRTLREAALELGLLTEEELDEI 448 (450)
T ss_pred hHHHHHHHHHHHH----HcCCCHHHHHHHhCCCCHHHHHHH
Confidence 7777777666543 4567888887543 3577666653
No 38
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-61 Score=480.83 Aligned_cols=412 Identities=19% Similarity=0.201 Sum_probs=325.8
Q ss_pred cCccCccCCCCccchHhhcccc-----hhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHH
Q 009005 84 LSPLDGRYWSKVKDLAPYMSEY-----GLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK 158 (546)
Q Consensus 84 ~sp~~~ry~~~~~~m~~ifsd~-----~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~ 158 (546)
...|+|||.+.++++...|++. .++...++-..|++++|. +.|+|.....+.| .+.++.+.. +++.-+
T Consensus 6 ~KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~---~~glit~~e~dki---l~gLe~i~~-ew~~~k 78 (464)
T KOG1316|consen 6 QKLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALE---KAGLITEAELDKI---LKGLEKIRR-EWAAGK 78 (464)
T ss_pred hhhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHH---HcCCCcHHHHHHH---HHHHHHHHH-HHhcCc
Confidence 4569999999988988877755 456666666899999999 8999996444444 222222110 121111
Q ss_pred HHHhhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 009005 159 NIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNA 237 (546)
Q Consensus 159 ~~~~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~ 237 (546)
-......+|| .+.|+.|.+.+|+ .++++|+||||||++.|.++||+|+++.. +...+..|++++.++|+.+.
T Consensus 79 f~~~p~dEDvHtanErrL~eliG~------~agKlHTgRSRNDQV~TDlRLw~r~~i~~-~~~~l~~L~~~~v~rAe~~~ 151 (464)
T KOG1316|consen 79 FKLNPNDEDVHTANERRLTELIGE------IAGKLHTGRSRNDQVVTDLRLWLRDAIDT-ILGLLWNLIRVLVDRAEAEL 151 (464)
T ss_pred eEeCCCchhhhhHHHHHHHHHHhh------hhhhcccCccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 1223456789 9999999999995 78999999999999999999999999996 99999999999999999999
Q ss_pred cccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh------hcccccccc-cCccccccCCCCCChhhHHHHHHH
Q 009005 238 NISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE------IMGKFAGAV-GNYNAHLSAYPDVNWPQITEDFVK 310 (546)
Q Consensus 238 ~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~------~~g~~gGAv-GT~aa~~~~~p~~d~~~v~~~la~ 310 (546)
+++||||||+|.|||+.|.||+..++..|.||..||.+++ |+|. ||. |+ .++ || ++-+++
T Consensus 152 dvlmpGYTHLQRAQpvrwsH~LlSha~~l~~D~~Rl~q~~~R~n~~PLGa--gALAGn------pl~-iD----R~~la~ 218 (464)
T KOG1316|consen 152 DVLMPGYTHLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGA--GALAGN------PLG-ID----REFLAE 218 (464)
T ss_pred CeeccChhhhhhccCchhHHHHHHHHHHHHhHHHHHHHHHHHhccCCccc--chhcCC------CCC-cc----HHHHHH
Confidence 9999999999999999999999999999999999999985 6664 554 65 344 66 777899
Q ss_pred HcCCCC---CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhh
Q 009005 311 SLGLSF---NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENS 385 (546)
Q Consensus 311 ~LGl~~---~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~ 385 (546)
.|||.. |+++ +++.||+++|+.+|.++++.+|+|+|+|+++|++ |||+.. .+++.+|||+||||+||+.+|++
T Consensus 219 ~LgF~~v~~NSm~-AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~l-SDaySTGSSlMPQKKNpDslELl 296 (464)
T KOG1316|consen 219 ELGFEGVIMNSMD-AVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTL-SDAYSTGSSLMPQKKNPDSLELL 296 (464)
T ss_pred hcCCcccchhhhh-ccccchhHHHHHHHHHHHHHHHHHHhhHhheeeccccCceee-ccccccCcccCCCCCCCCHHHHh
Confidence 999997 6777 8999999999999999999999999999999974 999987 78999999999999999999999
Q ss_pred hhchhhhhhHHHHH------HhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH
Q 009005 386 EGNLGKANEDLSFL------SMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV 459 (546)
Q Consensus 386 ~g~~~la~~~~~~~------~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i 459 (546)
||+.+ ++.|.+ .+++|.. |++|+|+.. ..+++.+......++.+..++++|+||+++|++.|.. .+
T Consensus 297 Rgksg---rV~gdl~g~lmt~KG~Pst-YnkDlQeDK--ep~Fds~~tv~~~l~v~tgv~stltvn~e~m~~aLt~--dm 368 (464)
T KOG1316|consen 297 RGKSG---RVFGDLTGLLMTLKGLPST-YNKDLQEDK--EPLFDSSKTVSDSLQVATGVISTLTVNQENMEKALTP--DM 368 (464)
T ss_pred ccccc---eehhhhHHHHHHhcCCccc-cccchhhhh--hHHHhhHHHHHHHHHHHHHHhhheeECHHHHhhccCc--hh
Confidence 99877 344433 3566765 999999873 1123456677778888999999999999999998854 45
Q ss_pred HHHHHHHHHHhcCch--hHHHHHHHHhhcccccccc-----HHHHHhhCC-CCHHHHHhccccCcC-------cccCchH
Q 009005 460 LAEPIQTVMRRYGVP--EPYEKLKELTRGKVVTKES-----IREFIIGLE-LPEEAKANLLNLTPH-------NYVGAAA 524 (546)
Q Consensus 460 ~aE~~~~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~-----l~e~~~~~~-l~~~~~~~l~~ldP~-------~~~G~a~ 524 (546)
+|.....+|++.|+| ++|++++++++.+...+.+ +.++-.-.. +.++...- +|-+ .++|.|.
T Consensus 369 lATdlA~YLVrKGvPFRqtHhisG~~V~~ae~rg~~l~~LsledlqklsplF~eDv~~v---~~ye~sVek~~a~GgTa~ 445 (464)
T KOG1316|consen 369 LATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDVFCV---FNYENSVEKRCAIGGTAK 445 (464)
T ss_pred hHhHHHHHHHHcCCCchhhhhhhHHHHHHHHHcCCCcccCCHHHHhhcCcccccchHHh---hchhhhHHHhhccCCchH
Confidence 666666889999999 9999999999876655443 333321111 22222211 2222 4589999
Q ss_pred HHHHHHHHHhh
Q 009005 525 ELARNVDVAVN 535 (546)
Q Consensus 525 ~~v~~~~~~~~ 535 (546)
..|..++..++
T Consensus 446 s~V~eQl~~~k 456 (464)
T KOG1316|consen 446 SCVLEQLRQLK 456 (464)
T ss_pred HHHHHHHHHHH
Confidence 99988887775
No 39
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.1e-60 Score=505.56 Aligned_cols=360 Identities=15% Similarity=0.172 Sum_probs=286.5
Q ss_pred ccCccCCCCcc-c-hHhhc-----ccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHH-HHHHHHhcCCcccHHHH
Q 009005 86 PLDGRYWSKVK-D-LAPYM-----SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKS-YLQGLIDGFNMDDALEV 157 (546)
Q Consensus 86 p~~~ry~~~~~-~-m~~if-----sd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~-~l~~~~~~~~~~d~~~i 157 (546)
.|.|||...++ + +..++ -|..++.+.+.+.+||+.||+ +.|+||++.+..|. .+.++.+ ..+
T Consensus 3 lw~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~---~~gii~~~e~~~i~~~L~~i~~----~~~--- 72 (434)
T PRK06389 3 IWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALA---QRRLITEKAPKCVINALIDIYK----NGI--- 72 (434)
T ss_pred CcccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHc----CCC---
Confidence 68999998655 4 33331 356788888999999999999 99999987777763 3332211 000
Q ss_pred HHHHhhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009005 158 KNIERVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDN 236 (546)
Q Consensus 158 ~~~~~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~ 236 (546)
. .....+|+ .++|++|.+++|+ +|+++|+||||||++.|+++|++|+.+.. +...+.+++++|+++ |
T Consensus 73 ~--~~~~~EDvh~~iE~~L~~~~G~------~gg~lhtgRSRNDqvat~~RL~~r~~~~~-~~~~l~~l~~~l~~~---~ 140 (434)
T PRK06389 73 E--IDLDLEDVHTAIENFVIRRCGD------MFKNFRLFLSRNEQVHADLNLFIIDKIIE-IEKILYEIIKVIPGF---N 140 (434)
T ss_pred c--CCCCCCchHHHHHHHHHHHhch------hhhhhcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---c
Confidence 0 01234688 9999999999985 79999999999999999999999999997 999999999999965 9
Q ss_pred ccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh------hcccccccccCccccccCCCCCChhhHHHHHHH
Q 009005 237 ANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE------IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK 310 (546)
Q Consensus 237 ~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~------~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~ 310 (546)
.+|+||||||+|||||+|||||+++|+++|.|+++||.++. |+|. ||++||. +| +| ++++|+
T Consensus 141 ~dtimpGyTHlQ~AqP~TfG~~l~a~a~~L~rd~~RL~~~~~r~~~~pLGa-ga~~Gt~------~~-id----r~~~A~ 208 (434)
T PRK06389 141 LKGRLPGYTHFRQAMPMTVNTYINYIKSILYHHINNLDSFLMDLREMPYGY-GSGYGSP------SS-VK----FNQMSE 208 (434)
T ss_pred cCceeccccccCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh-hhhhcCC------ch-hh----HHHHHH
Confidence 99999999999999999999999999999999999999984 5653 4566773 34 43 788999
Q ss_pred HcCCCC---CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhh
Q 009005 311 SLGLSF---NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEG 387 (546)
Q Consensus 311 ~LGl~~---~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g 387 (546)
+|||+. |++..+...+|.+++++++++.++++|+|||+|+++|++.|++++ ++.+++|||||||||||+.+|.+++
T Consensus 209 lLGf~~~~~n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~Dl~l~ss~g~iel-pd~~~~GSSiMPqKrNP~~~E~ir~ 287 (434)
T PRK06389 209 LLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYENGIITI-PDEFTTGSSLMPNKRNPDYLELFQG 287 (434)
T ss_pred HhCCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEe-cCCCCCCCCCCCCCcCcHHHHHHHH
Confidence 999998 344433334555889999999999999999999999999999987 4677899999999999999999999
Q ss_pred chhhhhhHHHHH---HhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHH
Q 009005 388 NLGKANEDLSFL---SMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPI 464 (546)
Q Consensus 388 ~~~la~~~~~~~---~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~ 464 (546)
+++.+......+ ..+++. .|++|+|+.. ..++.++..+..++..+..++++++||+++ ++.+ .++...+|.+
T Consensus 288 ~a~~v~g~~~~~~~~~~n~~~-~y~~D~q~~~--~~~~~~~~~~~~~l~l~~~~i~~l~~~~~~-~~a~-~~~~~ATdlA 362 (434)
T PRK06389 288 IAAESISVLSFIAQSELNKTT-GYHRDFQIVK--DSTISFINNFERILLGLPDLLYNIKFEITN-EKNI-KNSVYATYNA 362 (434)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCeECHHH-Hhhc-cCCCcHHHHH
Confidence 766433322222 233454 4899998753 233456778888889999999999999999 4544 3334567776
Q ss_pred HHHHHhcCch--hHHHHHHHHhhc
Q 009005 465 QTVMRRYGVP--EPYEKLKELTRG 486 (546)
Q Consensus 465 ~~~l~~~G~~--~Ah~iv~~~~~~ 486 (546)
..+++.|+| +||++|+++++.
T Consensus 363 -~~lv~~GipFR~AH~~Vg~~V~~ 385 (434)
T PRK06389 363 -WLAFKNGMDWKSAYAYIGNKIRE 385 (434)
T ss_pred -HHHHHcCCCHHHHHHHHHHHHHh
Confidence 667777998 999999999975
No 40
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=5.7e-60 Score=510.97 Aligned_cols=390 Identities=17% Similarity=0.130 Sum_probs=292.8
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHH-HHHHHhcCCcccHHHHHHHHhhhCCc------h-hhHHHHH
Q 009005 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSY-LQGLIDGFNMDDALEVKNIERVTNHD------V-KAVEYFL 175 (546)
Q Consensus 104 d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~-l~~~~~~~~~~d~~~i~~~~~~~~hd------v-~a~e~~L 175 (546)
+..+++++..+.+||++|+. +.|+||++.+++|.+ +.++.+......+ .+ ... ..+.+ | ..+|+.+
T Consensus 48 ~~~~i~~~~~v~~A~a~~l~---~~G~l~~~~~~~I~~al~ei~~~~~~~~f-~~-~~~-~~g~~t~~nmnvnevie~~~ 121 (479)
T PRK14515 48 HEGLIKAFAIVKKAAALANT---DVGRLELNKGGAIAEAAQEILDGKWHDHF-IV-DPI-QGGAGTSMNMNANEVIANRA 121 (479)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHcCcccCCC-CC-Ccc-cCCCcccccchHHHHHHHHH
Confidence 46799999999999999999 999999988888853 3333221110011 01 111 12223 4 5599999
Q ss_pred HHHhhcCchhhhhcC--------ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Q 009005 176 KQKCQSQPEIAKVLE--------FFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (546)
Q Consensus 176 ~e~~g~~~~~~~~~~--------~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~ 247 (546)
.+++|. +.|+ +||+||||||+++|+++|++|+++.. +.+.|..++++|.++|++|++++|+||||+
T Consensus 122 ~~~~G~-----~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~~-l~~~L~~L~~~L~~~A~~~~~~vm~GrTHl 195 (479)
T PRK14515 122 LELLGM-----EKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALEG-LLQTMGYMHDVFELKAEQFDHVIKMGRTHL 195 (479)
T ss_pred HHHhCc-----ccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccchhcc
Confidence 999985 2345 67799999999999999999999996 999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHhh---hccccc-ccccCccccccCCCCCChhhHHHHHHHHcCCCCC----CC
Q 009005 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFA-GAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFN----PY 319 (546)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~g-GAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~----~~ 319 (546)
||||||||||||++|+++|.|+++||.++. ..+++| ||+||.......| ..++...+++.+|+..+ .+
T Consensus 196 Q~A~PiT~G~~~~~~a~~l~r~~~RL~~~~~~l~~~pLG~gAvGT~~~~~~~~----~~~~l~~la~~~gl~~~~~~n~~ 271 (479)
T PRK14515 196 QDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNADPEY----IEAVVKHLAAISELPLVGAEDLV 271 (479)
T ss_pred ccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCCChhH----HHHHHHHHHHHhCCCCCCCcchH
Confidence 999999999999999999999999999985 455555 8899943221100 13456677888998764 33
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 320 VTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYI---SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 320 ~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~---s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
+ ++.+||++++++++++.++++|+|||+|+++|+ .+|+.+...+.+++|||||||||||+.+|.+++.+. .+.
T Consensus 272 d-a~~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp~~~~GSSiMP~KrNP~~~E~i~~~a~---~v~ 347 (479)
T PRK14515 272 D-ATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAF---QVI 347 (479)
T ss_pred H-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCCCCCCCcCCCCcccCchHHHHHHHHHH---HHH
Confidence 3 667899999999999999999999999999998 478866445568999999999999999999998544 566
Q ss_pred HHHHhhcchh-hhcccCCcc-h-hHHhHHhhHHHHHHHHHHHH-HhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcC
Q 009005 397 SFLSMKLPIS-RWQRDLTDS-T-VLRNMGGGLGHSLLAYKSAL-QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYG 472 (546)
Q Consensus 397 ~~~~~~l~~~-~~erDl~~s-~-~~~~l~~~~~~~~~~l~~~~-~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G 472 (546)
|.....+... .|+-.+... + +...++.++..+..+++.+. .++++|+||++||++|++.+++++++++ +.+|
T Consensus 348 G~~~~~~~~~~~~~le~n~~~p~i~~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~l~~s~~l~t~La----~~iG 423 (479)
T PRK14515 348 GNDHTICLASEAGQLELNVMEPVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVN----PHIG 423 (479)
T ss_pred hHHHHHHHHHhcccHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCccHHHHhc----chhc
Confidence 6643333211 121111111 1 11134455557777775444 5999999999999999999998774433 4678
Q ss_pred chhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCch
Q 009005 473 VPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 473 ~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~a 523 (546)
++.++++++ .+..++.++++++.+. .+++++++++ +||..++++.
T Consensus 424 ~~~v~~~a~----~A~~~g~~l~e~~~~~~~l~~~el~~~--ldP~~~~~~~ 469 (479)
T PRK14515 424 YEAAARVAK----EAIATGQSVRELCVKNGVLSQEDLELI--LDPFEMTHPG 469 (479)
T ss_pred HHHHHHHHH----HHHHhCCCHHHHHHhcCCCCHHHHHHh--CCHHHcCCCC
Confidence 655555544 4445678999988664 4788888874 9999999763
No 41
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=100.00 E-value=3e-61 Score=498.75 Aligned_cols=288 Identities=27% Similarity=0.427 Sum_probs=239.6
Q ss_pred ccCCCCccchHhhcccchhHHHHHH-----HHHHHHHHHhcCCCCCCCCcccHHHHHHH-HHHHhcCCcccHHHHHHHHh
Q 009005 89 GRYWSKVKDLAPYMSEYGLIYFRVL-----VEIKWLLKLSKIPEVTEVPSFSEEAKSYL-QGLIDGFNMDDALEVKNIER 162 (546)
Q Consensus 89 ~ry~~~~~~m~~ifsd~~~~~~~l~-----vE~A~a~aLa~~~~~GiIp~~aa~ai~~l-~~~~~~~~~~d~~~i~~~~~ 162 (546)
|||..++++|..+||+++.+++|+. +|+||++|++ +.|+||++.+++|.+. .++..+++..|...++..+.
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a---~~g~i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~ 77 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALA---EAGIIPKEAADAIVKALEEILEDGDLDDAFELDEIEE 77 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH---HTTSSTHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSS
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHH---HhhcchHHHHHHHHHHHHHHHHhhccccccchhhhhc
Confidence 6788788999999999999999999 9999999999 9999999888888643 33334354333444544444
Q ss_pred hhCCchhh-HHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccc
Q 009005 163 VTNHDVKA-VEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAI-NKVMFPVMDKLIKALCEIAKDNANIS 240 (546)
Q Consensus 163 ~~~hdv~a-~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al-~~~l~~~L~~l~~~L~~lA~~~~~t~ 240 (546)
..+|++.. +...+.++++..+ +.++|||+|+|||||+||+++|++|+++ . .|.+.|.+++++|.++|++|++|+
T Consensus 78 ~~~~~~~~~l~~~~~e~~~~~~---~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~-~l~~~l~~l~~~L~~~a~~~~~t~ 153 (312)
T PF00206_consen 78 DIGHAVEANLNEVLGELLGEPP---EAGGWVHYGRTSNDIVDTALRLQLRDALLE-LLLERLKALIDALAELAEEHKDTP 153 (312)
T ss_dssp SHHHHHHHHHHHHHHHHHTHSS---GGGGGTTTT--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTSE
T ss_pred cchhHHHHHHHHHhhhhhhccc---cccccccCCCcHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhhcCce
Confidence 45555533 5555555544222 5899999999999999999999999999 6 599999999999999999999999
Q ss_pred ccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcC-CCC
Q 009005 241 MLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLG-LSF 316 (546)
Q Consensus 241 m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LG-l~~ 316 (546)
|+||||+|||+|||||+|+++|+++|.|+++||.++. ..+++||++|+.++++ +| .++.+++++.|| |..
T Consensus 154 ~~grTh~Q~A~P~T~G~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgga~g~gt~~~-----~~-~~~~~~~~~~L~~~~~ 227 (312)
T PF00206_consen 154 MPGRTHGQPAQPTTFGHKLAAWADELARDLERLEEARKRLNVSPLGGAVGAGTSLG-----ID-REFQERVAEELGEFTG 227 (312)
T ss_dssp EEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEETTTTTTTSSHTT-----SH-HHHHHHHHHHHHHHHC
T ss_pred eccccccccccceeHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhccCCCccccccc-----cC-cchhhhHHhhhhhhhh
Confidence 9999999999999999999999999999999999996 7888999998866542 33 234557788777 433
Q ss_pred -----CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhch
Q 009005 317 -----NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNL 389 (546)
Q Consensus 317 -----~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~ 389 (546)
+++.+|+.+||++++++++++.++++|+|||+|+++|++ +|+++++++.+++|||||||||||+.+|++++.+
T Consensus 228 l~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a 307 (312)
T PF00206_consen 228 LGVPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEGQVGSSIMPHKRNPVILENIRGLA 307 (312)
T ss_dssp STEECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGSSSCSSSSTTCEETHHHHHHHHHH
T ss_pred cccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCccCCCCCCCHHHHHHHHhh
Confidence 445558899999999999999999999999999999987 9999998888899999999999999999998843
No 42
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-53 Score=440.22 Aligned_cols=433 Identities=21% Similarity=0.207 Sum_probs=357.3
Q ss_pred ccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHh
Q 009005 83 ALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIER 162 (546)
Q Consensus 83 ~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~ 162 (546)
+-+|..+||.+ ..+|..+||+.+.+..|-+++.-++.+-. +.+++.||+ .+|.++... .+++..|+..+.+.+.
T Consensus 6 ~~~pls~ry~~-~~~l~~~~s~~~~~~twr~lw~~lA~ae~-~lgL~~itk---~ai~e~~s~-~~~e~~d~~~l~~ee~ 79 (481)
T KOG2700|consen 6 YKSPLSGRYAS-ISELNPIFSDRNKFSTWRRLWLWLAEAEK-ELGLTTITK---EAIEEMKSS-RDIENIDFTALSPEEG 79 (481)
T ss_pred CCCcccceecc-ccccchhhhhhhhhhhhhHHHHhhhhhhh-cCCcccchH---HHHHHHHhh-ccccccchhhcChhhh
Confidence 67899999997 36999999999998888777655444433 236666875 555544432 3566678999999999
Q ss_pred hhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Q 009005 163 VTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISML 242 (546)
Q Consensus 163 ~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~ 242 (546)
..+|||++++..+.+.|.. +.+++|+|+|++++.|.+....+|++.+. +.+.|..+|+.+..++.+|++++|.
T Consensus 80 r~~hdVmahvh~~~~~cp~------aagiihlgatsc~vtdnadli~~rd~~k~-i~~~l~~vIdrls~~~~~~k~~~~~ 152 (481)
T KOG2700|consen 80 RYRHDVMAHVHSFGELCPI------AAGIIHLGATSCFVTDNADLIELRDASKL-ILPYLAGVIDRLSQFADKYKEKPTL 152 (481)
T ss_pred hhcccHHHHHHHHHhhcch------hcceEEeeeeeeeecCCccceechhHHHH-HHHHHHHHHHHHHHHHHHhccceec
Confidence 9999999999999999853 77899999999999999999999999995 9999999999999999999999999
Q ss_pred ccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCC--hhhHHHHHHHHcCCCCC
Q 009005 243 SRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVN--WPQITEDFVKSLGLSFN 317 (546)
Q Consensus 243 gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d--~~~v~~~la~~LGl~~~ 317 (546)
||||+|||+|+|||++.+-|.++|.++++++.+++ -...++||.||.+++...|-+.. ..++++.+++++||...
T Consensus 153 g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~ 232 (481)
T KOG2700|consen 153 GRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPM 232 (481)
T ss_pred ccccCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHhhcccHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999986 23447899999988876555432 23455567899999986
Q ss_pred CCC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 318 PYV-TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 318 ~~~-~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
... .|+++||..+++.+.+++++++..|+|.|++++..+++++++++++++|||+||+||||+.+|++.+ +++.+.
T Consensus 233 ~~~TGQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~~~ev~epFea~q~gsSaMp~krNpm~~E~its---lar~l~ 309 (481)
T KOG2700|consen 233 YIVTGQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAKFAEVEEPFEAHQIGSSAMPYKRNPMRCERITS---LARHLR 309 (481)
T ss_pred ccccCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCCchhHHHhH---HHHHHH
Confidence 544 4999999999999999999999999999999999999999999999999999999999999999765 777777
Q ss_pred HHHHhhcc---hhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHhc
Q 009005 397 SFLSMKLP---ISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRRY 471 (546)
Q Consensus 397 ~~~~~~l~---~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~~ 471 (546)
+.+...++ ..+++|++.+|+..|. ++..|..+...|....+++++|.|.+.+|++++..... +.+|.++++|...
T Consensus 310 ~~v~~al~~~~~qw~Ertl~dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~ 389 (481)
T KOG2700|consen 310 PYVTQALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKA 389 (481)
T ss_pred HHHHHHhhhHHHHHhhcccccccccceechHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 77666664 3345899999998884 56788888888888889999999999999999999875 7899999999544
Q ss_pred C--chhHHHHHHHHhhcc----ccccccHHHHH--hhCC---CCHHHHHhccccCcCcccCchHHHHHHHHHH
Q 009005 472 G--VPEPYEKLKELTRGK----VVTKESIREFI--IGLE---LPEEAKANLLNLTPHNYVGAAAELARNVDVA 533 (546)
Q Consensus 472 G--~~~Ah~iv~~~~~~a----~~~~~~l~e~~--~~~~---l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~ 533 (546)
| +++||+.|+.++..+ ...+.....+. +.+. ...++++. .|||.+|+|.|++++.+.+..
T Consensus 390 g~srq~ahe~I~~L~~~a~~~v~~e~g~~~~ie~~k~~~~~~~v~ee~~~--ll~p~~f~gra~dQie~~v~~ 460 (481)
T KOG2700|consen 390 GLSRQEAHEGIRKLSHQAAQVVKQEGGDNDLIERAKEDPTFKPVKEELDS--LLDPLNFTGRAVDQIEKFVPK 460 (481)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhcccccccchHHHHHh--hccchhcccccHHHHHHHhhh
Confidence 4 579999999988754 22333333332 2222 23445555 499999999999999887543
No 43
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=1.3e-46 Score=383.87 Aligned_cols=393 Identities=22% Similarity=0.241 Sum_probs=291.6
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH-HHh-cCCcccHHHHHHHHhhhC--Cch-hhHHHHHHHHh
Q 009005 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LID-GFNMDDALEVKNIERVTN--HDV-KAVEYFLKQKC 179 (546)
Q Consensus 105 ~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~-~~~-~~~~~d~~~i~~~~~~~~--hdv-~a~e~~L~e~~ 179 (546)
+.+++++-.+-+|-+++-. ++|.+|++-+++|...+. +++ +++..=|-.+.+.-..|. --+ .-+-+.-.+.+
T Consensus 41 ~~~I~Al~~lKkaaA~~N~---~LG~L~~~~a~aI~~Aadev~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~ 117 (462)
T COG0114 41 REIIRALGLLKKAAAQVNA---DLGLLDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELL 117 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHcCcccCCCCeEEEecCCCccccccHHHHHHHHHHHHh
Confidence 4578888888888888888 999999998888865433 222 222100111122111111 111 11112234444
Q ss_pred hc-----CchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccc
Q 009005 180 QS-----QPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTT 254 (546)
Q Consensus 180 g~-----~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtT 254 (546)
|. .+ -....+|++|+||||+++||+++..-.++..-|++.|..|+++|.++|++|.+++.+||||+|+|.|+|
T Consensus 118 gg~~g~~~~--VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlT 195 (462)
T COG0114 118 GGELGSKKP--VHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLT 195 (462)
T ss_pred CcccCCCCC--CCCCCcCCcccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcch
Confidence 42 11 123678999999999999999999999987569999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh----hcccccccccC-ccccccCCCCCChhhHHHHHHHHcCCCCCC----CCccccc
Q 009005 255 LGKEISVFAIRLGRERQEISQVE----IMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNP----YVTQIET 325 (546)
Q Consensus 255 fG~~la~~~~~L~R~~~rL~~~~----~~g~~gGAvGT-~aa~~~~~p~~d~~~v~~~la~~LGl~~~~----~~~~~~~ 325 (546)
||++|++|+..|.+..+|+.... .+...|+|||| +|++ |++. +++.+.++++.|+++.+ +. +..+
T Consensus 196 lGQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGlNa~----p~f~-ekva~~i~~~TG~~F~~a~NkF~-al~~ 269 (462)
T COG0114 196 LGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAH----PEFG-EKVAEELAELTGLPFVTAPNKFE-ALAA 269 (462)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCcCCC----ccHH-HHHHHHHHHHhCCCcccCCcHHH-HHhc
Confidence 99999999999999999998763 45556899999 8887 4343 56788889999998743 44 6678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHH-Hh
Q 009005 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL-SM 401 (546)
Q Consensus 326 rD~~~e~~~~la~la~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~-~~ 401 (546)
+|.++++.++|..++..|.|||+|+++|.| .|+.++..|+.++||||||.|+||+.||.+.- .+.+++|+= .-
T Consensus 270 hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPenePGSSIMPGKVNPtq~EA~tm---v~~QV~Gnd~ai 346 (462)
T COG0114 270 HDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENEPGSSIMPGKVNPTQCEALTM---VAAQVIGNDAAI 346 (462)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCccCCCCCCCchhHHHHHH---HHHHHHcchHHH
Confidence 999999999999999999999999999987 55555557899999999999999999997654 223455541 11
Q ss_pred hcchh--hhcccCCcchhHHhHHhhHHHHHHHHHH-HHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCchhHH
Q 009005 402 KLPIS--RWQRDLTDSTVLRNMGGGLGHSLLAYKS-ALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM-RRYGVPEPY 477 (546)
Q Consensus 402 ~l~~~--~~erDl~~s~~~~~l~~~~~~~~~~l~~-~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~~~Ah 477 (546)
.+..+ .+|...-..-+.+++.+.+.....++.. ...|+.++++|+++|+++++.+..+. ++| +.+||++|-
T Consensus 347 ~~ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l~~SlmLV-----TaLnp~IGYdkAa 421 (462)
T COG0114 347 AFAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLV-----TALNPHIGYDKAA 421 (462)
T ss_pred HHhhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHhhCchHH-----HhcccccchHHHH
Confidence 12211 1222111122334444444444444443 45789999999999999999998766 778 899999999
Q ss_pred HHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCcccCc
Q 009005 478 EKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 478 ~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~G~ 522 (546)
++.+.+-+ ++.+++|...+++ +++++++++ +||+.++|+
T Consensus 422 ~IAK~A~k----eg~tlreaa~~~G~lte~efd~~--v~Pe~mv~~ 461 (462)
T COG0114 422 KIAKKAHK----EGTTLREAALELGLLSEEEFDKL--VDPEKMVGP 461 (462)
T ss_pred HHHHHHHH----CCCcHHHHHHHcCCCCHHHHHHh--cCHHHhcCC
Confidence 99987765 5889999987776 679999986 999998875
No 44
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-44 Score=365.37 Aligned_cols=395 Identities=19% Similarity=0.180 Sum_probs=289.8
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCCch-hhHH----HHHHHHh
Q 009005 105 YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDV-KAVE----YFLKQKC 179 (546)
Q Consensus 105 ~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~hdv-~a~e----~~L~e~~ 179 (546)
..+++.++.|-+|-+.|-. ++|.||++.+++|.+.|..+-.-...|-.-+...-...|..+ ++.- +.--|.+
T Consensus 44 p~~i~a~~~VKKAaAlaN~---elg~l~~~~~~aIv~ACDeil~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE~l 120 (471)
T COG1027 44 PEFIRAMAMVKKAAALANK---ELGALPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELL 120 (471)
T ss_pred HHHHHHHHHHHHHHHHhhh---hhCCCCHHHHHHHHHHHHHHHcCccccccceeccccCCCccccccHHHHHHHHHHHHh
Confidence 5789999999999888887 999999999999876555332200011111111111122222 2211 2234455
Q ss_pred hcCch---hhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchh
Q 009005 180 QSQPE---IAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256 (546)
Q Consensus 180 g~~~~---~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG 256 (546)
|...+ .-....+|++++|+||+.+|+.++.+-..+.. |.+.+..|++++.++|++|++++++||||+|+|.|+|+|
T Consensus 121 G~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l~~-L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlG 199 (471)
T COG1027 121 GHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLRK-LIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLG 199 (471)
T ss_pred cCCCCceeeeCCccccchhhcccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcChhhhcccccchhh
Confidence 53111 01234579999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhh----hcccccccccC-ccccccCCCCCChhhHHHHHHHHcCCCCCC----CCccccchh
Q 009005 257 KEISVFAIRLGRERQEISQVE----IMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNP----YVTQIETHD 327 (546)
Q Consensus 257 ~~la~~~~~L~R~~~rL~~~~----~~g~~gGAvGT-~aa~~~~~p~~d~~~v~~~la~~LGl~~~~----~~~~~~~rD 327 (546)
++|.+|+..|.||++||.++. -+.-.|+|+|| .|++.. |. +.+.+++++..||+..+ +. ++.+.|
T Consensus 200 qEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiNa~~~-Y~----~~vv~~l~evtg~~~~~A~~Lie-atq~~~ 273 (471)
T COG1027 200 QEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINAPKG-YI----ELVVKKLAEVTGLPLVPAENLIE-ATQDTG 273 (471)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeccCcCCChh-HH----HHHHHHHHHHhCCCCccchhHHH-HHhccc
Confidence 999999999999999999874 23333688999 776532 22 35678899999998743 33 566789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHH-HHhhc
Q 009005 328 YMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF-LSMKL 403 (546)
Q Consensus 328 ~~~e~~~~la~la~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~-~~~~l 403 (546)
.++++.++|..++..|+|||+|+++++| .|+-+...|+.|.||||||.|+|||.+|.+.. .+-.+.|+ ..-.+
T Consensus 274 afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP~~Q~GSSIMPgKVNPVipEvvnQ---vcf~ViGnD~tit~ 350 (471)
T COG1027 274 AFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQ---VCFKVIGNDTTITM 350 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCCCCCCCCCCCCCCcCchhHHHHHH---HHHHHhcchHHHHH
Confidence 9999999999999999999999999998 77777778999999999999999999998654 22344443 11112
Q ss_pred chhhhcccCCcc-h-hHHhHHhhHHHHHHHHHH-HHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCchhHHHH
Q 009005 404 PISRWQRDLTDS-T-VLRNMGGGLGHSLLAYKS-ALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM-RRYGVPEPYEK 479 (546)
Q Consensus 404 ~~~~~erDl~~s-~-~~~~l~~~~~~~~~~l~~-~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~~~Ah~i 479 (546)
.....+..|.-. + +...+.+.+.....++.. ..+|+++++.|+++|+++++.|.++. ++| +.+|++.+-++
T Consensus 351 AaeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~~v~nSigiv-----TaLnp~iGy~~~~~i 425 (471)
T COG1027 351 AAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIV-----TALNPYIGYENAAII 425 (471)
T ss_pred HHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHhhhHHH-----HhhcccccchHHHHH
Confidence 211111112111 1 112233333333333333 35699999999999999999998877 778 89999999899
Q ss_pred HHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCcCcccCch
Q 009005 480 LKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 480 v~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP~~~~G~a 523 (546)
.+++.. +++++++++.+. .+++++++.+ |+|.....+.
T Consensus 426 aK~a~~----tgksv~evvLe~g~Lteeel~~I--l~~~~m~~p~ 464 (471)
T COG1027 426 AKEALE----TGKSVREVVLERGLLTEEELDDI--LSPENMTKPG 464 (471)
T ss_pred HHHHHH----cCCcHHHHHHHhCCCCHHHHHHH--hChhhcCCcc
Confidence 887765 789999987553 5899999885 9998876654
No 45
>KOG1317 consensus Fumarase [Energy production and conversion]
Probab=100.00 E-value=4.2e-37 Score=305.81 Aligned_cols=315 Identities=21% Similarity=0.243 Sum_probs=245.8
Q ss_pred hcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHH
Q 009005 188 VLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLG 267 (546)
Q Consensus 188 ~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~ 267 (546)
...+++..+||||..+|++.+..-..+...|.+.|..|.++|..++++++|++.+||||.|+|.|.|+|++|++|++.+.
T Consensus 154 PNdHvN~SQSSNDTFPtamHIa~~~ei~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ 233 (487)
T KOG1317|consen 154 PNDHVNKSQSSNDTFPTAMHIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVT 233 (487)
T ss_pred CccccccccccCCccchHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhhHHHHHH
Confidence 35688899999999999999999888876699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hhcccccccccC-ccccccCCCCCChhhHHHHHHHHcCCCCCC----CCccccchhHHHHHHHHHHH
Q 009005 268 RERQEISQV----EIMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNP----YVTQIETHDYMAKLFYAFVR 338 (546)
Q Consensus 268 R~~~rL~~~----~~~g~~gGAvGT-~aa~~~~~p~~d~~~v~~~la~~LGl~~~~----~~~~~~~rD~~~e~~~~la~ 338 (546)
..++|+... +.+.+.|+|||| ++.- +|++ .++.++++++.||++.. +. +...||.++|+.++|..
T Consensus 234 ngl~Rv~~~lpr~y~LA~GGTAVGTGLNTr----~GFa-eK~a~~va~ltgLpFvtApNkFE-ALAahDA~VE~~GalNt 307 (487)
T KOG1317|consen 234 NGLQRVAATLPRLYQLAQGGTAVGTGLNTR----KGFA-EKIAARVAELTGLPFVTAPNKFE-ALAAHDAMVEVSGALNT 307 (487)
T ss_pred HHHHHHHhhhhHHHHHhcCCcccccccccc----ccHH-HHHHHHHHHHhCCCceecccHHH-HHHhhhhHHHhcccHHH
Confidence 999999876 356677899999 5542 4454 57889999999999833 33 66679999999999999
Q ss_pred HHHHHHHHHHHHHHHhh---hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh-hcchh--hhcccC
Q 009005 339 FNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM-KLPIS--RWQRDL 412 (546)
Q Consensus 339 la~~L~kia~Dl~~~~s---~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~-~l~~~--~~erDl 412 (546)
++.+|.||++||+++.| .|+.++.+|+.++||||||.|+||..||.+.-. +.+++|.-.. ....+ .+|...
T Consensus 308 ~A~SlmKianDIRfLGSGPRcGlgEL~LPENEPGSSIMPGKVNPTQcEamTmv---caQVMGN~vAvtvgGsnGhFELNV 384 (487)
T KOG1317|consen 308 IAVSLMKIANDIRFLGSGPRCGLGELMLPENEPGSSIMPGKVNPTQCEAMTMV---CAQVMGNHVAVTVGGSNGHFELNV 384 (487)
T ss_pred HHHHHHHHhhhhhhccCCCCCCccccccCCCCCCcccCCCCCCcHHHHHHHHH---HHHHhcCceEEEecccCceeEEec
Confidence 99999999999999976 777777789999999999999999999976542 2245443211 11111 112111
Q ss_pred CcchhHHhHHhhHHH-HHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCchhHHHHHHHHhhccccc
Q 009005 413 TDSTVLRNMGGGLGH-SLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM-RRYGVPEPYEKLKELTRGKVVT 490 (546)
Q Consensus 413 ~~s~~~~~l~~~~~~-~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~~~Ah~iv~~~~~~a~~~ 490 (546)
-..-+..++...+.. +..++..-..|+.+++.|++|+.+.+..+..+. ++| +++||+.|-++.+.+-+ .
T Consensus 385 FKP~i~~nvL~SirLl~D~~~sF~~nCV~GI~aN~erI~kll~eSLMLV-----TALNPhIGYD~aAkiAKtAhK----n 455 (487)
T KOG1317|consen 385 FKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAKLLNESLMLV-----TALNPHIGYDNAAKIAKTAHK----N 455 (487)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCHHHHHHHHHhhhhhh-----hccCCccCchhHHHHHHHHhh----c
Confidence 111122222222221 122333456899999999999999998876555 678 89999999888886554 5
Q ss_pred cccHHHHHhhCC-CCHHHHHhccccCcCcccCc
Q 009005 491 KESIREFIIGLE-LPEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 491 ~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~G~ 522 (546)
+.+|++-.-.++ +++++.+++ ..|+.++|+
T Consensus 456 g~TLk~eal~lG~lTeeqFdew--V~Pe~Mlgp 486 (487)
T KOG1317|consen 456 GTTLKEEALKLGVLTEEQFDEW--VVPEKMLGP 486 (487)
T ss_pred CCcHHHHHHHhcCCCHHHHHhh--hCHHhccCC
Confidence 678887665566 899999986 899999886
No 46
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=100.00 E-value=4.7e-34 Score=282.11 Aligned_cols=191 Identities=30% Similarity=0.361 Sum_probs=158.5
Q ss_pred HHHHHHHHhhcCchhhhhcCc-----cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Q 009005 171 VEYFLKQKCQSQPEIAKVLEF-----FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245 (546)
Q Consensus 171 ~e~~L~e~~g~~~~~~~~~~~-----vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRT 245 (546)
++..|.+.++. ..+++ +|+|+||||+.+|+.++++|+++.+ +.+.+..+.+++..+|++|++++|||||
T Consensus 16 i~~~L~~~~~~-----~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~-l~~~l~~~~~~l~~~a~~~~~~~~~~~t 89 (231)
T cd01594 16 VEEVLAGRAGE-----LAGGLHGSALVHKGRSSNDIGTTALRLALRDALDD-LLPLLKALIDALALKAEAHKGTVMPGRT 89 (231)
T ss_pred HHHHHHHHHHH-----HhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCEeeccc
Confidence 55556665553 23444 4999999999999999999999996 9999999999999999999999999999
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCccccc
Q 009005 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIET 325 (546)
Q Consensus 246 H~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~~~ 325 (546)
|+|+|+|+||||++++|.+.|.|+++||.++
T Consensus 90 h~q~A~p~t~g~~~~~~~~~l~~~~~rL~~~------------------------------------------------- 120 (231)
T cd01594 90 HLQDAQPVTLGYELRAWAQVLGRDLERLEEA------------------------------------------------- 120 (231)
T ss_pred ccccCccccHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999999999886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhc
Q 009005 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL 403 (546)
Q Consensus 326 rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l 403 (546)
+++++++.++.++++|+||++|++.|.+ ++++.++...+++|||+||||+||+.+|++++...++......+....
T Consensus 121 --~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~ 198 (231)
T cd01594 121 --AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTAL 198 (231)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7788999999999999999999999875 666666444479999999999999999999986665444333322222
Q ss_pred chhhhcccCCcchhHH
Q 009005 404 PISRWQRDLTDSTVLR 419 (546)
Q Consensus 404 ~~~~~erDl~~s~~~~ 419 (546)
.. .+++|.+++...+
T Consensus 199 ~~-~~~~~~~d~~~~~ 213 (231)
T cd01594 199 KG-GPERDNEDSPSMR 213 (231)
T ss_pred hc-ccccccccCHHHH
Confidence 22 2567888876544
No 47
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.96 E-value=2.8e-28 Score=239.77 Aligned_cols=181 Identities=21% Similarity=0.258 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHH---Hhhcchhhhc
Q 009005 335 AFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL---SMKLPISRWQ 409 (546)
Q Consensus 335 ~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~---~~~l~~~~~e 409 (546)
+++.++++|+|||+|+++|++ +|++.++++.+++|||||||||||+.+|++++.+. .+.+.+ ...+ ...+|
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~---~~~g~~~~~~~~~-~~~~e 97 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLAR---VLRSYLVTALENV-PLWHE 97 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHH---HHHHHHHHHHHHh-HHHhc
Confidence 999999999999999999975 88999877789999999999999999999998555 444443 3333 34579
Q ss_pred ccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHHHHh--cCchhHHHHHHHHhh
Q 009005 410 RDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTVMRR--YGVPEPYEKLKELTR 485 (546)
Q Consensus 410 rDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~l~~--~G~~~Ah~iv~~~~~ 485 (546)
||+++|..+| .+++++..+..++..+..++++++||++||+++++.+++. ++|.+++.|.+ +|+.+||++|+++++
T Consensus 98 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~ 177 (216)
T PRK08937 98 RDLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAM 177 (216)
T ss_pred cCCchhHHHhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999998777 5778899999999999999999999999999999998764 58888888854 445599999999999
Q ss_pred ccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccC
Q 009005 486 GKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVG 521 (546)
Q Consensus 486 ~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G 521 (546)
.+..++.++.+.+... .+++++++.+ +||..|+|
T Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~l~~~~l~~~--ldp~~~vg 216 (216)
T PRK08937 178 EAWKNQKDLRELLEADERFTKQLTKEELDEL--FDPEAFVG 216 (216)
T ss_pred HHHHhCCCHHHHHHhChHhHhcCCHHHHHHH--hCHHhhcC
Confidence 8777778888877543 4677777764 89999987
No 48
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=99.85 E-value=1.7e-21 Score=169.36 Aligned_cols=115 Identities=73% Similarity=1.184 Sum_probs=99.6
Q ss_pred hhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCchhHHHHHHHHhh
Q 009005 406 SRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTR 485 (546)
Q Consensus 406 ~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~~~Ah~iv~~~~~ 485 (546)
|+|||||+||++.|+++.+|+++..++..+.+++++|+||+++|.++|+.+|.++||+++++|+++|++++||.++++++
T Consensus 1 SR~QRDLtDSTvlRNiGva~~~sliA~~s~lkGl~Kl~vn~~~l~~dL~~nWeVlaEpIQTvmRr~g~~~pYE~LK~lTR 80 (115)
T PF08328_consen 1 SRWQRDLTDSTVLRNIGVAFGHSLIAYKSLLKGLGKLEVNEERLAEDLDENWEVLAEPIQTVMRRYGIPNPYEKLKELTR 80 (115)
T ss_dssp -STTB-THHHHHHTTHHHHHHHHHHHHHHHHHHHHTEEE-HHHHHHHHCT-GGGGHHHHHHHHHHTT-SSHHHHHHHHHT
T ss_pred CcccccchHHHHHHhhhHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHhhCCCCHHHHHhccccCcCccc
Q 009005 486 GKVVTKESIREFIIGLELPEEAKANLLNLTPHNYV 520 (546)
Q Consensus 486 ~a~~~~~~l~e~~~~~~l~~~~~~~l~~ldP~~~~ 520 (546)
+...++.++++|++.+.+|++.+++|..|.|.+|+
T Consensus 81 g~~it~~~l~~fI~~L~ip~~~k~~L~~ltP~~Y~ 115 (115)
T PF08328_consen 81 GKKITKEDLREFIESLDIPEEAKARLLALTPATYI 115 (115)
T ss_dssp TS---HHHHHHHHHTSSS-HHHHHHHHH--CCC--
T ss_pred CCCCCHHHHHHHHHhCCCCHHHHHHHHhcCccccC
Confidence 99999999999999999999999998789999996
No 49
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=99.78 E-value=5e-19 Score=184.13 Aligned_cols=421 Identities=24% Similarity=0.219 Sum_probs=303.6
Q ss_pred ccccccccccccccccccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH
Q 009005 67 NMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI 146 (546)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~ 146 (546)
.+......+++-+++.+.+|.++||+.+......-|++.......+-++.||..-+...+++-.+|......+..+..++
T Consensus 57 i~e~~s~~~~e~~d~~~l~~ee~r~~hdVmahvh~~~~~cp~aagiihlgatsc~vtdnadli~~rd~~k~i~~~l~~vI 136 (481)
T KOG2700|consen 57 IEEMKSSRDIENIDFTALSPEEGRYRHDVMAHVHSFGELCPIAAGIIHLGATSCFVTDNADLIELRDASKLILPYLAGVI 136 (481)
T ss_pred HHHHHhhccccccchhhcChhhhhhcccHHHHHHHHHhhcchhcceEEeeeeeeeecCCccceechhHHHHHHHHHHHHH
Confidence 33345555788899999999999999987777888999888888888899988877777788888877777777777777
Q ss_pred hcCCcc-cHHHHHHHHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009005 147 DGFNMD-DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKL 225 (546)
Q Consensus 147 ~~~~~~-d~~~i~~~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l 225 (546)
+.+... +.-+.......|+|+...++.+.++.|--.+++..+-+.+|..|++-|+.....+....+++..++....+++
T Consensus 137 drls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kga~gtqasf~~l~~~~~~kv 216 (481)
T KOG2700|consen 137 DRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKGATGTQASFLSLFLGDMDKV 216 (481)
T ss_pred HHHHHHHHHhccceecccccCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHhhcccHHHH
Confidence 766522 2222345677899999999999999998777887888999999999999999999999999987788888888
Q ss_pred HHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHH
Q 009005 226 IKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQIT 305 (546)
Q Consensus 226 ~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~ 305 (546)
++...-.+++..=++|.-+| ||++.|.+.|.+++..+....-..+-..+.+.++++++++|.++++...+..++|+
T Consensus 217 ~~ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~~~ev~epFea~q~gsSaMp~k--- 292 (481)
T KOG2700|consen 217 EKLDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAKFAEVEEPFEAHQIGSSAMPYK--- 292 (481)
T ss_pred HHHHHHHHHHhCCCcccccc-CCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCC---
Confidence 77666666889999999999 99999999999999998877777777777788888999999887765444434443
Q ss_pred HHHHHHcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhh
Q 009005 306 EDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENS 385 (546)
Q Consensus 306 ~~la~~LGl~~~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~ 385 (546)
.||+. .|.++.++ ..+.-...+..- .++++ .-++..|+|+||||.||+.+++.
T Consensus 293 ----------rNpm~---------~E~itsla---r~l~~~v~~al~---~~~~q--w~Ertl~dSa~~rivlP~~Fl~a 345 (481)
T KOG2700|consen 293 ----------RNPMR---------CERITSLA---RHLRPYVTQALN---TASVQ--WHERTLDDSANRRIVLPDAFLTA 345 (481)
T ss_pred ----------CCCch---------hHHHhHHH---HHHHHHHHHHhh---hHHHH--HhhcccccccccceechHHHHHH
Confidence 23332 12222222 111111111110 12222 23578999999999999999999
Q ss_pred hhchh-hhhhHHHHHHhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHH
Q 009005 386 EGNLG-KANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPI 464 (546)
Q Consensus 386 ~g~~~-la~~~~~~~~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~ 464 (546)
.|+++ ++|...+......++.+..||..+..+.++++-++.....+.+.+.+.|..|.++..
T Consensus 346 d~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a~----------------- 408 (481)
T KOG2700|consen 346 DGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAA----------------- 408 (481)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----------------
Confidence 99888 667666665555667777788888888887777777776666777776666555433
Q ss_pred HHHHHhcCchhHHHHHHHHhhccccccccHHHHHhhCCCCHHHHHhccccCcCcccCchHHHHHHHHHHhhH
Q 009005 465 QTVMRRYGVPEPYEKLKELTRGKVVTKESIREFIIGLELPEEAKANLLNLTPHNYVGAAAELARNVDVAVNL 536 (546)
Q Consensus 465 ~~~l~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~~~~ 536 (546)
+.+.++.|.++-++.+++.........+ +...+....++....+.+..+-|..|.|........+-+.+.|
T Consensus 409 ~~v~~e~g~~~~ie~~k~~~~~~~v~ee-~~~ll~p~~f~gra~dQie~~v~~~~~~a~a~~~~~~~~~v~L 479 (481)
T KOG2700|consen 409 QVVKQEGGDNDLIERAKEDPTFKPVKEE-LDSLLDPLNFTGRAVDQIEKFVPKEVVPALAAYALAVDEAVHL 479 (481)
T ss_pred HHHHHhcCCcHHHHHhcccccccchHHH-HHhhccchhcccccHHHHHHHhhhhhhHHHHHHHHHhhhhhcc
Confidence 3445788888999998887654322221 1111222234444444443478899999988887777665544
No 50
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=98.69 E-value=2.6e-08 Score=83.34 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=59.8
Q ss_pred hHHHHHHHHHH-Hh-cCchhHHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHH
Q 009005 458 EVLAEPIQTVM-RR-YGVPEPYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNV 530 (546)
Q Consensus 458 ~i~aE~~~~~l-~~-~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~ 530 (546)
.++||.++..| .+ +|+++||++|+++++.+..++.++++.+... .+++++++++ |||..|+|.++++++++
T Consensus 3 li~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d~~i~~~ls~~el~~l--~dp~~ylg~~~~i~~rv 80 (81)
T PF10397_consen 3 LIFSERVMLALAEKGLGRQEAHELVQEAAMEAWENGRDLREVLLADPEIAAYLSEEELEEL--FDPESYLGNADEIVDRV 80 (81)
T ss_dssp GGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHHHCTTHHHHTTSHHHHHHHH--T-GGGGCTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHhHCCHHHHHhh--cCHHHHHhhHHHHHHHH
Confidence 37899999999 45 6778999999999999888899999988643 3788888885 99999999999999998
Q ss_pred H
Q 009005 531 D 531 (546)
Q Consensus 531 ~ 531 (546)
+
T Consensus 81 ~ 81 (81)
T PF10397_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 5
No 51
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=95.27 E-value=0.007 Score=46.96 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=38.1
Q ss_pred HHH-HhcCchhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCcccC
Q 009005 466 TVM-RRYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHNYVG 521 (546)
Q Consensus 466 ~~l-~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~G 521 (546)
++| +.+||+.|-++++++.+ ++.++++++.+.+ +++++++++ |||...+.
T Consensus 3 TaL~p~iGYe~aa~iAk~A~~----~g~svre~v~~~g~lt~ee~d~l--l~p~~mt~ 54 (55)
T PF10415_consen 3 TALNPYIGYEKAAEIAKEALA----EGRSVREVVLEEGLLTEEELDEL--LDPERMTN 54 (55)
T ss_dssp GGGHHHHHHHHHHHHHHHHHH----HT--HHHHHHHTTSS-HHHHHHH--TSHHHHTT
T ss_pred eeccchhccHHHHHHHHHHHH----cCCCHHHHHHHcCCCCHHHHHHH--cCHHHcCC
Confidence 445 78999999888887665 6889999987776 899999986 99987664
No 52
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=95.09 E-value=0.0096 Score=48.49 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhcCch--hHHHHHHHHhhccccccccHHH
Q 009005 458 EVLAEPIQTVMRRYGVP--EPYEKLKELTRGKVVTKESIRE 496 (546)
Q Consensus 458 ~i~aE~~~~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e 496 (546)
.+++|.++.++++ |+| +||++|+++++.+...+..+.+
T Consensus 2 ~~ATdlAD~LVr~-GipFR~AH~iVg~~V~~a~~~~~~l~~ 41 (70)
T PF14698_consen 2 STATDLADYLVRK-GIPFREAHHIVGRLVRLAEEEGKPLSE 41 (70)
T ss_dssp GGHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred ccHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCChhh
Confidence 3567777655566 999 9999999999877666554443
Done!