Query 009005
Match_columns 546
No_of_seqs 229 out of 1980
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bhg_A Adenylosuccinate lyase; 100.0 1E-93 3.6E-98 774.2 38.1 453 74-530 2-458 (459)
2 2qga_B Adenylosuccinate lyase; 100.0 2.6E-92 8.9E-97 764.4 36.4 451 78-532 2-459 (465)
3 2ptr_A Adenylosuccinate lyase; 100.0 7E-88 2.4E-92 729.3 39.7 451 76-530 1-455 (462)
4 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 1.8E-81 6E-86 678.4 37.5 427 85-534 6-449 (454)
5 3c8t_A Fumarate lyase; structu 100.0 3E-81 1E-85 675.8 38.8 423 84-533 5-442 (451)
6 2j91_A Adenylosuccinate lyase; 100.0 2.4E-81 8.2E-86 683.6 35.0 427 82-532 34-484 (503)
7 4eei_A Adenylosuccinate lyase; 100.0 2.8E-81 9.4E-86 672.6 35.0 411 88-534 2-433 (438)
8 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 2.5E-80 8.5E-85 668.7 39.8 430 84-534 3-445 (450)
9 1yis_A Adenylosuccinate lyase; 100.0 7E-81 2.4E-85 677.4 34.6 428 82-532 6-456 (478)
10 1c3c_A Protein (adenylosuccina 100.0 3.7E-80 1.3E-84 663.7 37.5 412 89-531 2-428 (429)
11 2pfm_A Adenylosuccinate lyase; 100.0 1.7E-79 5.8E-84 660.7 38.7 414 87-530 10-439 (444)
12 1dof_A Adenylosuccinate lyase; 100.0 3.5E-77 1.2E-81 635.5 33.3 382 82-499 1-395 (403)
13 1k7w_A Delta 2 crystallin; eye 100.0 5.7E-75 2E-79 629.0 29.5 414 85-535 9-458 (468)
14 1tj7_A Argininosuccinate lyase 100.0 3.1E-73 1.1E-77 613.7 34.8 415 86-535 3-453 (457)
15 2e9f_A Argininosuccinate lyase 100.0 2.6E-73 9E-78 615.1 31.4 417 84-536 3-457 (462)
16 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 6E-69 2E-73 563.8 29.6 342 83-452 6-355 (359)
17 1jsw_A L-aspartase, L-aspartat 100.0 3.4E-68 1.2E-72 577.1 32.5 400 86-523 18-466 (478)
18 1fur_A Fumarase C, FUMC; hydro 100.0 2.2E-66 7.5E-71 561.1 31.0 400 95-523 26-463 (467)
19 1vdk_A Fumarase C, fumarate hy 100.0 3.8E-66 1.3E-70 559.5 29.4 390 104-523 42-463 (466)
20 1yfm_A Fumarase, YFUM; lyase, 100.0 1.6E-65 5.6E-70 555.6 28.6 386 104-522 67-487 (488)
21 3r6q_A Aspartase; aspartate am 100.0 7E-65 2.4E-69 548.5 30.4 403 83-522 14-462 (468)
22 4adm_A Fumarase C, fumarate hy 100.0 6.9E-64 2.4E-68 542.8 28.0 417 80-523 38-489 (495)
23 4hgv_A Fumarase C, fumarate hy 100.0 1.6E-63 5.5E-68 540.8 30.7 422 77-523 39-495 (495)
24 3ocf_A Fumarate lyase:delta cr 100.0 2.6E-63 8.8E-68 536.3 30.1 403 78-518 27-477 (478)
25 3gtd_A Fumarase C, fumarate hy 100.0 7.2E-63 2.5E-67 531.8 32.2 417 77-521 28-482 (482)
26 3e04_A Fumarase, fumarate hydr 100.0 9E-61 3.1E-65 515.9 28.7 421 77-522 33-489 (490)
No 1
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=1e-93 Score=774.18 Aligned_cols=453 Identities=53% Similarity=0.892 Sum_probs=403.0
Q ss_pred cccccccccccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCC-CC--CCcccHHHHHHHHHHHhcCC
Q 009005 74 REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFN 150 (546)
Q Consensus 74 ~~~~~~~~~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~-Gi--Ip~~aa~ai~~l~~~~~~~~ 150 (546)
.+|+++.||++|||++||.+++++|+.+|||++++++|+.+|+||++||+ +. |+ ||+.+++++++|.+.+.+|.
T Consensus 2 ~~~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~~~~~l~ve~a~~~ala---~~~gi~~ip~i~~~~~~~i~~~~~~~~ 78 (459)
T 3bhg_A 2 NAMTLTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLA---ANDTIPEVPALDNKARKFLSDLISNFN 78 (459)
T ss_dssp ----CCGGGCSSTTTTTTHHHHGGGTTTSSHHHHHHHHHHHHHHHHHHHH---TCTTCTTSCCCCHHHHHHHHHHHHTCC
T ss_pred CCCCcccccccCcccccccCChHHHHHHcCHHHHHHHHHHHHHHHHHHHH---hccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999998778999999999999999999999999999 77 66 55445666666666666776
Q ss_pred cccHHHHHHHHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 009005 151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKAL 229 (546)
Q Consensus 151 ~~d~~~i~~~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~-~~l~~~L~~l~~~L 229 (546)
..|+++++++++.++|||+++|++|++++|+.++++++++|||+|+|||||++|+++|++|+++. . |.+.|.+|+++|
T Consensus 79 ~~d~~~~~~~e~~~~~Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~-l~~~L~~l~~~L 157 (459)
T 3bhg_A 79 ESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQV-IQPTIAEIMGSI 157 (459)
T ss_dssp HHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCChHHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55788899999999999999999999999854333468999999999999999999999999998 5 999999999999
Q ss_pred HHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHHHHHH
Q 009005 230 CEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV 309 (546)
Q Consensus 230 ~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la 309 (546)
.++|++|++|+|+||||+||||||||||||++|+++|.|+++||.++.++|+++|||||+|++...||++||+.++++++
T Consensus 158 ~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~~~~~~~~~~~~~~ 237 (459)
T 3bhg_A 158 TLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFV 237 (459)
T ss_dssp HHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCSSSSCHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888889999999998877789999999999999
Q ss_pred HHcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhch
Q 009005 310 KSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNL 389 (546)
Q Consensus 310 ~~LGl~~~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~ 389 (546)
+.|||..|++++|+.+||+++|++++++.++++|+|||+|+|+|++.|++++.++++++|||||||||||+.+|+++|++
T Consensus 238 ~~LGl~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~ 317 (459)
T 3bhg_A 238 TSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNL 317 (459)
T ss_dssp HHTTCEECSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECC------CCSSCCCCCTHHHHHHHHHH
T ss_pred HHhCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceehccCCCCCCCCCCCCCcChHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred hhhhhHHHHHHhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHH
Q 009005 390 GKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMR 469 (546)
Q Consensus 390 ~la~~~~~~~~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~ 469 (546)
++++...+.+..+++.++||||+++|..+|.++..+..+..+++.+..++++|+||++||++|++.+++++||.++++|.
T Consensus 318 ~l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~L~ 397 (459)
T 3bhg_A 318 GLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMR 397 (459)
T ss_dssp HHHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHHHHHHHHHH
Confidence 98888887777788766799999999988888889999999999999999999999999999999999989999999996
Q ss_pred hcCchhHHHHHHHHhhccccccccHHHHHhhCCCCHHHHHhccccCcCcccCchHHHHHHH
Q 009005 470 RYGVPEPYEKLKELTRGKVVTKESIREFIIGLELPEEAKANLLNLTPHNYVGAAAELARNV 530 (546)
Q Consensus 470 ~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~l~~~~~~~l~~ldP~~~~G~a~~~v~~~ 530 (546)
++|+++||++|+++++++..++.++++++..+.++++..++|+.|||.+|+|.++++++++
T Consensus 398 ~~G~~~A~~iv~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~l~~~dp~~y~g~a~~~~~~~ 458 (459)
T 3bhg_A 398 RYNEPNAYEQLKELTRGQMIDAENLKKFIKTLSIPEEAKAELMKLTPETYTGLATQLVKAF 458 (459)
T ss_dssp HTTCTTHHHHHHHHHTTSCCCHHHHHHHHHTSCSCHHHHHHHHHCCGGGCCTTHHHHHHHC
T ss_pred HhChHHHHHHHHHHHhhcccccccHHHHHHhcCCCchhHHHHHhCCHHHHhCcHHHHHHhc
Confidence 6699999999999999655666789999988777665545555699999999999999874
No 2
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=2.6e-92 Score=764.41 Aligned_cols=451 Identities=45% Similarity=0.727 Sum_probs=401.7
Q ss_pred cccccccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCC-CCCCcccHHHHHHHHHHHhcCCcccHHH
Q 009005 78 LSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TEVPSFSEEAKSYLQGLIDGFNMDDALE 156 (546)
Q Consensus 78 ~~~~~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~-GiIp~~aa~ai~~l~~~~~~~~~~d~~~ 156 (546)
.+.|+++|||++||.+++++|+.+|||++++++|+.+|+||++||+ +. |+||++++++|.++++.+.+|+..|+++
T Consensus 2 ~~~~~~~s~~~gRy~~~~~~~~~~~sd~~~~~~~i~ve~A~~~ala---~~~gii~~~~~~~i~~l~~~~~~~~~~d~~~ 78 (465)
T 2qga_B 2 SEHLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLN---EEELFFEKVTDHSVEVLNQIATNITDSDIAR 78 (465)
T ss_dssp -CGGGCSSTTTTTTHHHHGGGGGTSSHHHHHHHHHHHHHHHHHHHH---HHTSSSCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_pred CccccccCcccccccCCcHHHHHHhCHHHHHHHHHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHHHhhccccHHH
Confidence 3568999999999998777899999999999999999999999999 77 9999999999987776667776657778
Q ss_pred HHHHHhhhCCchhhHHHHHHHHhhcC--chhhhhcCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 009005 157 VKNIERVTNHDVKAVEYFLKQKCQSQ--PEIAKVLEFFHFACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCEIA 233 (546)
Q Consensus 157 i~~~~~~~~hdv~a~e~~L~e~~g~~--~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~-~~l~~~L~~l~~~L~~lA 233 (546)
+++.++.++|||+++|++|++++|.. ++++++++|||+|+|||||+||+++|++|+++. . |.+.|.+|+++|.++|
T Consensus 79 i~~~e~~~~hDV~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~-l~~~L~~l~~~L~~~A 157 (465)
T 2qga_B 79 VKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDV-VIPCLEKIMLKLKDLA 157 (465)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCChHHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 88889999999999999999999842 122357999999999999999999999999998 6 9999999999999999
Q ss_pred HHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHHHHHHHH-c
Q 009005 234 KDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS-L 312 (546)
Q Consensus 234 ~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~-L 312 (546)
++|++|||+||||+||||||||||||++|+++|.|+++||.++..+++++||+||+|++...||++||+.+.+++++. |
T Consensus 158 ~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~p~~d~~~~~~~~~~~~L 237 (465)
T 2qga_B 158 VEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHF 237 (465)
T ss_dssp HHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSCCEECCCCTTSSCHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHccCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCccccccccCcccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988888899999999887778999999999999876 9
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhh
Q 009005 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392 (546)
Q Consensus 313 Gl~~~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la 392 (546)
||+.+++++|+.+||+++|++++++.++++|+|||+|+|+|++.|++++.++++++|||||||||||+.+|+++|+++++
T Consensus 238 Gl~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~~ 317 (465)
T 2qga_B 238 NLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIA 317 (465)
T ss_dssp CCEECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEC-------CCSCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeeCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999999999999998888888999999999999999999999999999988
Q ss_pred hhHHHHHHhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcC
Q 009005 393 NEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYG 472 (546)
Q Consensus 393 ~~~~~~~~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G 472 (546)
+.....+...++.++||||+++|.++|.++..+..+..+++.+..++++|+||+++|++|++.+++++||.++++|.+.|
T Consensus 318 ~~~~~~~~~~l~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~~ae~v~~~L~~~G 397 (465)
T 2qga_B 318 NAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHN 397 (465)
T ss_dssp HHHHHHHHHHTTCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHTCGGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCChHHHHHHHHHHHhC
Confidence 88777777777666799999999988888889999999999999999999999999999999999988999999997679
Q ss_pred chhHHHHHHHHhhccccccccHHHHHhhCC--CCHHHHHhccccCcCcccCchHHHHHHHHH
Q 009005 473 VPEPYEKLKELTRGKVVTKESIREFIIGLE--LPEEAKANLLNLTPHNYVGAAAELARNVDV 532 (546)
Q Consensus 473 ~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~--l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~ 532 (546)
+++||++|+++++.+..++.++.+++..+. +++...++|+.|||.+|+|.++++|+++++
T Consensus 398 ~~~A~~iv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ldp~~y~G~a~~~v~~~~~ 459 (465)
T 2qga_B 398 YVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTPATYTGYADYLAKNVER 459 (465)
T ss_dssp CSCHHHHHHHHHTTSCCCHHHHHHHHHHHSTTSCHHHHHHHHHCCGGGCCTTHHHHHHTHHH
T ss_pred hHHHHHHHHHHHhhhhhccCCHHHHHHhchhcCCcchHHHHHhcCHHHhCCcHHHHHHHHHH
Confidence 999999999999866667778888887654 777332333359999999999999999873
No 3
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=7e-88 Score=729.26 Aligned_cols=451 Identities=61% Similarity=1.002 Sum_probs=392.0
Q ss_pred cccccccccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCC-CC--CCcccHHHHHHHHHHHhcCCcc
Q 009005 76 FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFNMD 152 (546)
Q Consensus 76 ~~~~~~~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~-Gi--Ip~~aa~ai~~l~~~~~~~~~~ 152 (546)
|+++.||++|||++||.+++++|+.+|||++++++|+.+|+||+++|+ +. |+ ||+.++++.+.|.+.++++...
T Consensus 1 ~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~i~~~~~ve~A~a~ala---~~g~i~~ip~i~~~~a~~I~~~~~~i~~g 77 (462)
T 2ptr_A 1 MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLA---AHAAIKEVPAFAADAIGYLDAIVASFSEE 77 (462)
T ss_dssp CCCCTTTCSSTTTTTTGGGSGGGGGTTSHHHHHHHHHHHHHHHHHHHH---HCTTCTTSCCCCHHHHHHHHHHHHTCCHH
T ss_pred CCcccccccCcccccccCchHHHHHHCCcHHHHHHHHHHHHHHHHHHH---HcCCCCCCCCCCHHHHHHHHHHHHHhccC
Confidence 457889999999999998878999999999999999999999999999 77 44 3433344444555555566544
Q ss_pred cHHHHHHHHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 009005 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCE 231 (546)
Q Consensus 153 d~~~i~~~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~-~~l~~~L~~l~~~L~~ 231 (546)
|++.+.+++..++|||+++|+.|.+++|..++..++++|||+|+|||||++|+++|++|+++. . |.+.|.+|+++|.+
T Consensus 78 ~~~~~~~~~~~~~~dv~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~-l~~~L~~L~~~L~~ 156 (462)
T 2ptr_A 78 DAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEV-ILPYWRQLIDGLKD 156 (462)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred CHHHHHhhccccCCCHHHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 677788888899999999999999999853222347899999999999999999999999998 4 99999999999999
Q ss_pred HHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCccccccCCCCCChhhHHHHHHHH
Q 009005 232 IAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS 311 (546)
Q Consensus 232 lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~ 311 (546)
+|++|++|+|+||||+||||||||||||++|+++|.|+++||.++.+.|++||||||++++...||++||+++.+++++.
T Consensus 157 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~~~~~~~~~~~~~~v~~~~~~~ 236 (462)
T 2ptr_A 157 LAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTS 236 (462)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCTTSSCHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhcchhhcccccCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999988776678888999999999999
Q ss_pred cCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhh
Q 009005 312 LGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGK 391 (546)
Q Consensus 312 LGl~~~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~l 391 (546)
|||..|++++|+.+||+++|++++++.++++|+|||+|+++|++..++.+.++++++|||||||||||+.+|+++++++.
T Consensus 237 LGl~~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~~~E~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~ 316 (462)
T 2ptr_A 237 LGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGL 316 (462)
T ss_dssp TTCEECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECCCTTCCSCSSCTTCCCCHHHHHHHHHHHH
T ss_pred hCCCCCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhccCCCCCCcCCCCCCCCCcHHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999998555656789999999999999999999999997776
Q ss_pred hhhHHHHHHhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhc
Q 009005 392 ANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRY 471 (546)
Q Consensus 392 a~~~~~~~~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~ 471 (546)
+......+..+++.++||||+++|.++|.++..+..+..+++.+..++++|+||++||+++++.+++++||.++++|..+
T Consensus 317 v~g~~~~~~~~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~l~~~ 396 (462)
T 2ptr_A 317 SNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRY 396 (462)
T ss_dssp HHHHHHHHHHHTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHTTCGGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHhh
Confidence 55554455566776679999999999888888999999999999999999999999999999999999999999999767
Q ss_pred CchhHHHHHHHHhhccccccccHHHHHhhCCCCHHHHHhccccCcCcccCchHHHHHHH
Q 009005 472 GVPEPYEKLKELTRGKVVTKESIREFIIGLELPEEAKANLLNLTPHNYVGAAAELARNV 530 (546)
Q Consensus 472 G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~l~~~~~~~l~~ldP~~~~G~a~~~v~~~ 530 (546)
|+++||++++++++.+..++.++++++.++.++++..++++.|||.+|+|.+++++++.
T Consensus 397 G~~~A~~iv~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~l~~ldp~~~~~~a~~~~~~~ 455 (462)
T 2ptr_A 397 GIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDEL 455 (462)
T ss_dssp TCSSHHHHHHHC-----CCHHHHHHHHHTSSSCHHHHHHHHTCCGGGCCTTHHHHHHHG
T ss_pred ChHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCcccHHHHHhCCHHHHhChHHHHHHHH
Confidence 99999999999998777778899999977666533222233499999999999999875
No 4
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=1.8e-81 Score=678.38 Aligned_cols=427 Identities=17% Similarity=0.228 Sum_probs=359.0
Q ss_pred CccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH-HHhcCCcccHHHHHHHHhh
Q 009005 85 SPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMDDALEVKNIERV 163 (546)
Q Consensus 85 sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~-~~~~~~~~d~~~i~~~~~~ 163 (546)
.||++||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|.+.+. +..+| |.+.+...+..
T Consensus 6 ~~~~~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~---~~~~~~~~~~~ 77 (454)
T 1q5n_A 6 QLYASLFYQ--RDVTEIFSDRALVSYMVEAEVALAQAQA---QVGVIPQSAATVIQRAAKTAIDKI---DFDALATATGL 77 (454)
T ss_dssp CTTHHHHSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHTTHHHHC---CHHHHHHHHHH
T ss_pred CccccccCc--HHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHhhhcC---CHHHHHHHhhc
Confidence 478899996 6999999999999999999999999999 899999888888764332 12244 46677777788
Q ss_pred hCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Q 009005 164 TNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS 243 (546)
Q Consensus 164 ~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~g 243 (546)
++|||+++|+.|.+++|... .+.++|||+|+|||||++|+++|++|+++.. |.+.|..|+++|.++|++|++|+|+|
T Consensus 78 ~~~dVia~~~~l~e~~g~~~--g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~G 154 (454)
T 1q5n_A 78 AGNIAIPFVKQLTAIVKDAD--EDAARYVHWGATSQDILDTACILQCRDALAI-VQNQVQQCYETALSQAQTYRHQVMMG 154 (454)
T ss_dssp HSSSHHHHHHHHHHHHHTTC--TTGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCcHHHHHHHHHHHhcccc--CCccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCceeec
Confidence 99999999999999995210 1368999999999999999999999999995 99999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC
Q 009005 244 RTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV 320 (546)
Q Consensus 244 RTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~ 320 (546)
|||+||||||||||||++|+++|.|+++||.++. ..+++||||||..+++. | + +.+++++++.|||+.++.+
T Consensus 155 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~-~---~-~~~~~~~a~~LG~~~~~~~ 229 (454)
T 1q5n_A 155 RTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQD-Q---G-SIVVEAYAKQLKLGQTACT 229 (454)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGTT-C---H-HHHHHHHHHHHTCBCCSSC
T ss_pred cccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHhhcCccccc-c---c-HHHHHHHHHHhCcCCCCCC
Confidence 9999999999999999999999999999999986 67888999999765432 2 2 5689999999999998877
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHH
Q 009005 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (546)
Q Consensus 321 ~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~ 398 (546)
+++ +||+++|++++++.++++|+|||+|+++|++ +|++.+++.++++||||||||+||+.+|++++. ++.+.|+
T Consensus 230 ~~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~---a~~v~g~ 305 (454)
T 1q5n_A 230 WHG-ERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAA---ANRVPAL 305 (454)
T ss_dssp CSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCC-------------CCCHHHHHHHHH---HHHHHHH
T ss_pred Ccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCCCccCCCCCCCHHHHHHHHH---HHHHHHH
Confidence 544 9999999999999999999999999999986 777877665689999999999999999999984 4467776
Q ss_pred HHh---hcchhhhcccCCcchhHHhH-HhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHHH-HhcC
Q 009005 399 LSM---KLPISRWQRDLTDSTVLRNM-GGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTVM-RRYG 472 (546)
Q Consensus 399 ~~~---~l~~~~~erDl~~s~~~~~l-~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~l-~~~G 472 (546)
... +++ ++||||+++|.+.|.+ ++++..+..++..+..++++|+||++||+++++.++++ +||.++++| +++|
T Consensus 306 ~~~~~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~ig 384 (454)
T 1q5n_A 306 MSSIYQSMV-QEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMG 384 (454)
T ss_dssp HHHHHHTTC-CCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHHHC
T ss_pred HHHHHHhcc-chhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHHHHHHHHHHHhcC
Confidence 533 334 4589999999887654 58888888999999999999999999999999988874 899999999 5699
Q ss_pred chhHHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHHHh
Q 009005 473 VPEPYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDVAV 534 (546)
Q Consensus 473 ~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~~ 534 (546)
+++||++|+++++.+..++.++++++.+. .+++++++++ |||.+|+|+++++|+++++.+
T Consensus 385 ~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~--ldp~~~~g~a~~~v~~~~~~~ 449 (454)
T 1q5n_A 385 RLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEI--FKPESYLGNIQDQIDAVLQEA 449 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHTTCHHHHTTCCHHHHHHH--TCGGGGCTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhcchhhhcCCCHHHHHHh--CCHHHHcCcHHHHHHHHHHHH
Confidence 99999999999998888888999988654 3677777774 999999999999999998744
No 5
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=3e-81 Score=675.78 Aligned_cols=423 Identities=19% Similarity=0.218 Sum_probs=355.6
Q ss_pred cCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhh
Q 009005 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERV 163 (546)
Q Consensus 84 ~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~ 163 (546)
.+||++||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|.+.+.. .+| |.+.+...+..
T Consensus 5 ~~~~~~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~-~~~---~~~~~~~~~~~ 75 (451)
T 3c8t_A 5 SPLYGRSFAD--DKMRELFSAQSFISRCVETEVALARAQA---RLGIIPEDAAAGITAAART-FAP---EMERLRDDTEI 75 (451)
T ss_dssp -CCSSCCCSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHH-CCC---CHHHHHHHHHH
T ss_pred CCccccccCc--HHHHHHcCCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHhhh-cCC---CHHHHHHHhhc
Confidence 3689999996 6999999999999999999999999999 8999998888777543321 244 56778878888
Q ss_pred hCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Q 009005 164 TNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS 243 (546)
Q Consensus 164 ~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~g 243 (546)
++|||+++++.|.+++|+ .++|||+|+|||||++|+++|++|+++.. |.+.|.+|+++|.++|++|++|+|+|
T Consensus 76 ~~~dVia~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~G 148 (451)
T 3c8t_A 76 VGYPILPLVEQLSAHAGE------AGKYLHWGATTQDIMDTATVLQIRDGLAL-ISRRIESVRKALAALARNHRDTPMAG 148 (451)
T ss_dssp HSSSHHHHHHHHHHHHGG------GGGGSSSSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcHHHHHHHHHHHccc------ccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCceeec
Confidence 999999999999999985 57999999999999999999999999995 99999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC
Q 009005 244 RTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV 320 (546)
Q Consensus 244 RTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~ 320 (546)
|||+||||||||||||++|+++|.|+++||.++. ..+++||||||+.+++. ++ +.+++++++.|||+.++.+
T Consensus 149 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~~----~~-~~~~~~~a~~LGl~~~~~~ 223 (451)
T 3c8t_A 149 RTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGT----RG-LDVQRELARELNLGVPSIT 223 (451)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCCTTSSCGGGTT----CH-HHHHHHHHHHHTCBCCSSC
T ss_pred ccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhcCccccc----cc-HHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999999999999986 67888999999765533 22 5689999999999998877
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHH
Q 009005 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (546)
Q Consensus 321 ~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~ 398 (546)
+++ +||+++|++++++.++++|+|||+|+++|++ +|++.+++.++++|||||||||||+.+|++++. ++.+.|+
T Consensus 224 ~~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~---a~~v~g~ 299 (451)
T 3c8t_A 224 WHS-ARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAG---ARIVRNH 299 (451)
T ss_dssp CSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC---------------CCHHHHHHHHH---HHHHHHH
T ss_pred Ccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCCCCCCCCCcCCHHHHHHHHH---HHHHHHH
Confidence 554 9999999999999999999999999999986 777877665689999999999999999999984 4467776
Q ss_pred HHhhc--chhhhcccCCcchhHHhH-HhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHH-HhcCc
Q 009005 399 LSMKL--PISRWQRDLTDSTVLRNM-GGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVM-RRYGV 473 (546)
Q Consensus 399 ~~~~l--~~~~~erDl~~s~~~~~l-~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l-~~~G~ 473 (546)
....+ ..++||||+++|.+.|.+ ++++..+..++..+..++++|+||++||+++++.+++ ++||.++++| +++|+
T Consensus 300 ~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~ig~ 379 (451)
T 3c8t_A 300 ATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTGR 379 (451)
T ss_dssp HHHHHHHTCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGHHHHHHHHHHHHCH
T ss_pred HHHHHhcCchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHHHHHHHHHHHhCCH
Confidence 53322 224589999999887654 5888888889999999999999999999999998887 4899999999 56999
Q ss_pred hhHHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHHH
Q 009005 474 PEPYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDVA 533 (546)
Q Consensus 474 ~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~ 533 (546)
++||++|+++++.+..++.++++++.+. .+++++++++ |||.+|+|.++++++++++.
T Consensus 380 ~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~--ldp~~~~~~~~~~~~~~~~~ 442 (451)
T 3c8t_A 380 KEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEALRDL--TDPRNYLGSAGAMVDNVLGG 442 (451)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTCHHHHHHHCHHHHHHH--TCGGGCCTTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhcChhhhccCCHHHHHHh--CCHHHHhchHHHHHHHHHHh
Confidence 9999999999998888888999988654 1566667664 99999999999999998754
No 6
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=2.4e-81 Score=683.56 Aligned_cols=427 Identities=19% Similarity=0.198 Sum_probs=352.4
Q ss_pred cccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCC-CCcccHHHHHHHHHHHhcCCcccHHHHHHH
Q 009005 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE-VPSFSEEAKSYLQGLIDGFNMDDALEVKNI 160 (546)
Q Consensus 82 ~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~Gi-Ip~~aa~ai~~l~~~~~~~~~~d~~~i~~~ 160 (546)
.+.+|+++||++ ++|+.+|||+++++.|+++|+||++|++ ++|+ ||++++++ |.+.+++| +.+.+++.
T Consensus 34 ~~~spl~~ry~~--~~m~~~fS~~~~~~~~~~~e~Ala~a~~---~~Gl~i~~e~~~~---I~~~l~~i---~~~~~~~~ 102 (503)
T 2j91_A 34 SYRSPLASRYAS--PEMCFVFSDRYKFRTWRQLWLWLAEAEQ---TLGLPITDEQIRE---MKSNLENI---DFKMAAEE 102 (503)
T ss_dssp SCCCHHHHTTSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HHTCSCCHHHHHH---HHTTSSCC---CHHHHHHH
T ss_pred cccCCcccccCC--HHHHHHhChhHHHHHHHHHHHHHHHHHH---HcCCCCCHHHHHH---HHHHHhhc---CHHHHhhh
Confidence 488999999996 5999999999999999999999999999 8999 99655544 44434444 56778888
Q ss_pred HhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 009005 161 ERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANIS 240 (546)
Q Consensus 161 ~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~ 240 (546)
++.++|||+++++.|++++|+ +++|||+|+||||++||+..|++|+++.. |.+.|.+|+++|.++|++|++||
T Consensus 103 e~~~~hDV~a~v~~l~e~~g~------~~~~iH~G~TS~Di~dta~~L~lr~al~~-l~~~L~~L~~~L~~~A~~~~~~~ 175 (503)
T 2j91_A 103 EKRLRHDVMAHVHTFGHCCPK------AAGIIHLGATSCYVGDNTDLIILRNALDL-LLPKLARVISRLADFAKERASLP 175 (503)
T ss_dssp HHHHSCHHHHHHHHHHHHCTT------TGGGTTTTCCTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hhhcCCcHHHHHHHHHHHhcc------ccccccCCCCHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcE
Confidence 899999999999999999975 79999999999999999999999999995 99999999999999999999999
Q ss_pred ccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCCh---hhHHHHHHHHcCC
Q 009005 241 MLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNW---PQITEDFVKSLGL 314 (546)
Q Consensus 241 m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~---~~v~~~la~~LGl 314 (546)
|+||||+||||||||||||++|+++|.|+++||.++. ..+.+||++||+++++..|| +|| +.+.+.+++.|||
T Consensus 176 m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG~~GT~a~~~~~f~-~D~~~~~~v~~~~a~~LGl 254 (503)
T 2j91_A 176 TLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFE-GDDHKVEQLDKMVTEKAGF 254 (503)
T ss_dssp EEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCCTTSSCHHHHHHTT-TCHHHHHHHHHHHHHHTTC
T ss_pred eeccccCccceecchHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhhccccC-CchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999874 23445889999888877788 788 6677999999999
Q ss_pred CC-CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhh
Q 009005 315 SF-NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKAN 393 (546)
Q Consensus 315 ~~-~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~ 393 (546)
+. ++..+|+.+||+++|++++++.++++|+|||+|||+|+++|++.+++..+++|||||||||||+.+|+++| +++
T Consensus 255 ~~~~~~s~~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~---~a~ 331 (503)
T 2j91_A 255 KRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCS---LAR 331 (503)
T ss_dssp SCBCSCCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSEECCC-----------CCCCCHHHHHHHH---HHH
T ss_pred CCCCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeccccCCCCCCCCCccccCcHHHHHHHH---HHH
Confidence 95 44556889999999999999999999999999999999999999987788999999999999999999988 555
Q ss_pred hHHHHHHhhc---chhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHHH
Q 009005 394 EDLSFLSMKL---PISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTVM 468 (546)
Q Consensus 394 ~~~~~~~~~l---~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~l 468 (546)
.+.++....+ ...+||||+.+|.+.|. +..++..+..++..+..++++|+||+++|+++++.++++ +||.++++|
T Consensus 332 ~v~g~~~~~~~~~~~~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~~l~~s~~~~ate~v~~~l 411 (503)
T 2j91_A 332 HLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAM 411 (503)
T ss_dssp HHHHTTHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHH
Confidence 7777754322 22357999999988874 446666777788888999999999999999999999875 789999999
Q ss_pred HhcCch--hHHHHHHHHhhccc------cccccHHHHHhhCC---CCHHHHHhccccCcCcccCchHHHHHHHHH
Q 009005 469 RRYGVP--EPYEKLKELTRGKV------VTKESIREFIIGLE---LPEEAKANLLNLTPHNYVGAAAELARNVDV 532 (546)
Q Consensus 469 ~~~G~~--~Ah~iv~~~~~~a~------~~~~~l~e~~~~~~---l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~ 532 (546)
++.|++ +||++|++.++.+. ..+.++.+.+.... ++++++++ +|||.+|+|+++++|+++++
T Consensus 412 v~~G~~~~~Ah~~v~~~a~~~g~~V~~~~~~~~l~e~l~~~~~~~l~~eel~~--~ldp~~~~g~a~~~v~~~l~ 484 (503)
T 2j91_A 412 VKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDH--LLDPSSFTGRASQQVQRFLE 484 (503)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHCGGGHHHHTTHHH--HTCGGGGSTTHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHhcCcccCCCHHHHHH--hcCHHHhCCcHHHHHHHHHH
Confidence 777885 99999988776321 11235666655332 33445555 49999999999999999985
No 7
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=2.8e-81 Score=672.63 Aligned_cols=411 Identities=22% Similarity=0.276 Sum_probs=341.7
Q ss_pred CccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCCc
Q 009005 88 DGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHD 167 (546)
Q Consensus 88 ~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~hd 167 (546)
..||+ +++|+.+|||++++++|++||.||+++++ + |+||++++++|.. .+ +| |+++++++++.++||
T Consensus 2 ~~ry~--~~~m~~~fs~~~~~~~~l~ve~Ala~a~~---~-GlIp~~~~~~i~~---~~-~~---d~~~i~~~e~~~~hd 68 (438)
T 4eei_A 2 IKRYD--VAEISKIWADENKYAKMLEVELAILEALE---D-RMVPKGTAAEIRA---RA-QI---RPERVDEIEKVTKHD 68 (438)
T ss_dssp CGGGC--CHHHHHHHSHHHHHHHHHHHHHHHHHHGG---G-TTSCTTHHHHHHH---HC-CC---CHHHHHHHHHHHSCH
T ss_pred CcccC--cHHHHHHcChHHHHHHHHHHHHHHHHHHh---c-CCCCHHHHHHHHh---hC-CC---CHHHHHHHHHhcCCC
Confidence 46898 47999999999999999999999999999 8 9999988877643 22 33 789999999999999
Q ss_pred hhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Q 009005 168 VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (546)
Q Consensus 168 v~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~ 247 (546)
|+++|+.|++++|+ ++++|||+|+|||||+||+++|++|+++.. |.+.|.+|+++|.++|++|+++||+||||+
T Consensus 69 V~a~~~~l~e~~g~-----~~~~~iH~G~SsnDv~~Ta~~L~lr~~~~~-l~~~L~~l~~~L~~~A~~~~~~~m~GrTHl 142 (438)
T 4eei_A 69 IIAFCTSIAEQFTA-----ETGKFFHFGVTSSDIIDSALSLQIRDSMSY-VIKDLEALCDSLLTKAEETKEIITMGRSHG 142 (438)
T ss_dssp HHHHHHHHHTTSCT-----TTTTTTTCSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHHHHHHHHHcCH-----HhhcccCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCcccccccC
Confidence 99999999999985 349999999999999999999999999995 999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCCcccc
Q 009005 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIE 324 (546)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~~~~ 324 (546)
||||||||||||++|+++|.|+++||.++. ..+++||||||+..+ + +.+++++++.|||+.++.++|++
T Consensus 143 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~~-------~-~~~~~~~a~~LG~~~~~~~~~v~ 214 (438)
T 4eei_A 143 MFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCIL-------T-TEDEKKAADILGLPVEEVSTQVI 214 (438)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTSCCSSS-------C-HHHHHHHHHHHTCCBCSSCSSSC
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccHhhCcccc-------c-HHHHHHHHHHcCCCCCCcccccc
Confidence 999999999999999999999999999986 678888999996432 2 35789999999998767667999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHh-
Q 009005 325 THDYMAKLFYAFVRFNNILIDFDRDVWGYI--SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM- 401 (546)
Q Consensus 325 ~rD~~~e~~~~la~la~~L~kia~Dl~~~~--s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~- 401 (546)
+||+++|++++++.++++|+|||+||++|+ ++|++.++++++++|||||||||||+.+|+++| +++.+.++...
T Consensus 215 ~rD~~~e~~~~l~~~a~~L~kia~Di~ll~~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g~~~~~ 291 (438)
T 4eei_A 215 PRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTG---MARMLRSHVSIA 291 (438)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCSEECCC------------CCCCHHHHHHHH---HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccccCCCCCCCCCCCCCcHHHHHHHH---HHHHHHHHHHHH
Confidence 999999999999999999999999999998 488888877789999999999999999999998 45567776533
Q ss_pred --hcchhhhcccCCcchhHHhH-HhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHHhcCch--h
Q 009005 402 --KLPISRWQRDLTDSTVLRNM-GGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMRRYGVP--E 475 (546)
Q Consensus 402 --~l~~~~~erDl~~s~~~~~l-~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~~~G~~--~ 475 (546)
+++. +||||+++|.++|.+ +.++..+..++..+..++++|+||+++|++|++.+++ ++||.+++.|.+.|++ +
T Consensus 292 ~~~~~~-~~erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~~Lv~~g~~~~~ 370 (438)
T 4eei_A 292 LENCVL-WHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMRED 370 (438)
T ss_dssp HHTTCC-CTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHHHHHHSSCCHHH
T ss_pred Hhccch-hcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHH
Confidence 3343 479999999888754 4677777778888999999999999999999999886 5789999999766765 9
Q ss_pred HHHHHHHHhhccccccccHHHHHhh---------CCCCHHHHHhccccCcCcccCchHHHHHHHHHHh
Q 009005 476 PYEKLKELTRGKVVTKESIREFIIG---------LELPEEAKANLLNLTPHNYVGAAAELARNVDVAV 534 (546)
Q Consensus 476 Ah~iv~~~~~~a~~~~~~l~e~~~~---------~~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~~ 534 (546)
||++|+++++.+.. +.++++++.+ +.++++++.++ +| +|+|++++.|+++++..
T Consensus 371 Ah~~v~~~~~~a~~-g~~l~e~~~~~~~~~~~~~~~~~~~~~~~~--~d--~~gG~a~~~v~~~l~~~ 433 (438)
T 4eei_A 371 CYKIVQQVAFDLKQ-GESFSKKLQKVMHDEHNIILDIPEMDFEGI--KK--TYLKEIDHVFDRSVKAR 433 (438)
T ss_dssp HHHHHHHC--------CCHHHHHHHHHHHTTCCCCCCCCCSHHHH--HH--HHTTTHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHhhhhccccCCCHHHHHHH--HH--hcCCchHHHHHHHHHHh
Confidence 99999999999888 8899988643 13455556553 78 89999999999987654
No 8
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=2.5e-80 Score=668.73 Aligned_cols=430 Identities=21% Similarity=0.228 Sum_probs=358.6
Q ss_pred cCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhh
Q 009005 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERV 163 (546)
Q Consensus 84 ~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~ 163 (546)
.+|++ ||.+ +++|+.+|||++++++|++||+||+++++ ++|+||++.+++|.+.+.. ..| |++.+...+..
T Consensus 3 ~~~~~-ry~~-~~~~~~i~s~~~~i~~~~~v~~A~a~a~~---~~G~i~~~~a~~I~~a~~~-~~f---~~~~~~~~~~~ 73 (450)
T 1re5_A 3 NQLFD-AYFT-APAMREIFSDRGRLQGMLDFEAALARAEA---SAGLVPHSAVAAIEAACQA-ERY---DTGALANAIAT 73 (450)
T ss_dssp CCTTH-HHHS-CHHHHHHTSHHHHHHHHHHHHHHHHHHHH---TTTSSCHHHHHHHHHHCCG-GGS---CHHHHHHHHHH
T ss_pred Ccchh-hccC-CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHhc-CCC---CHHHHHHHHhc
Confidence 35666 9997 68999999999999999999999999999 9999998777776543211 234 56778888888
Q ss_pred hCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Q 009005 164 TNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS 243 (546)
Q Consensus 164 ~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~g 243 (546)
++|||+++++.|++++|.. ++..++|||+|+|||||++|+++|++|+++.. |.+.|.+|+++|.++|++|++++|+|
T Consensus 74 ~~~dV~a~~~~l~e~~g~~--~~~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~G 150 (450)
T 1re5_A 74 AGNSAIPLVKALGKVIATG--VPEAERYVHLGATSQDAMDTGLVLQLRDALDL-IEADLGKLADTLSQQALKHADTPLVG 150 (450)
T ss_dssp HSSSHHHHHHHHHHHHHHH--CGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cCccHHHHHHHHHHHhCCC--CCcccccccCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeec
Confidence 9999999999999999820 00238999999999999999999999999995 99999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC
Q 009005 244 RTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV 320 (546)
Q Consensus 244 RTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~ 320 (546)
|||+||||||||||||++|+++|.|+++||.++. ..+++||||||+.++. |+ +..+.+++++.|||+.++.+
T Consensus 151 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~---~~--~~~~~~~la~~LG~~~~~~~ 225 (450)
T 1re5_A 151 RTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALG---SK--AMPVAEALAEQLKLTLPEQP 225 (450)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGG---GG--HHHHHHHHHHHHTCBCCSSC
T ss_pred cccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhcCCcccC---cc--hHHHHHHHHHHhCcCCCCcc
Confidence 9999999999999999999999999999999985 6788889999965542 21 45788999999999998876
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHH
Q 009005 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF 398 (546)
Q Consensus 321 ~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~ 398 (546)
++.+||+++|++++++.++++|+|||+|+++|++ +|++.+++.++++||||||||+||+.+|+++++++.+......
T Consensus 226 -~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~ 304 (450)
T 1re5_A 226 -WHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLST 304 (450)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeecccccCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999986 7778776656899999999999999999999966643333333
Q ss_pred HHhhcchhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhh-HHHHHHHHHHH-hcCchh
Q 009005 399 LSMKLPISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWE-VLAEPIQTVMR-RYGVPE 475 (546)
Q Consensus 399 ~~~~l~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~-i~aE~~~~~l~-~~G~~~ 475 (546)
+..+++. +||||+++|.+.|. ++.++..+..++..+..++++|+||++||+++++.+++ ++||.++++|. .+|+++
T Consensus 305 ~~~~~~~-~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~Ae~l~~~L~~gig~~~ 383 (450)
T 1re5_A 305 LFAAMPQ-EHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDR 383 (450)
T ss_dssp HHHTCCC-CTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHHHSCHHH
T ss_pred HHHhChh-hccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhHHHHHHHHHhcCCCHHH
Confidence 3455565 68999999987765 45667777778888899999999999999999998887 47999999995 477889
Q ss_pred HHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHHHHh
Q 009005 476 PYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVDVAV 534 (546)
Q Consensus 476 Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~~~~ 534 (546)
||++++++++.+..++.++++++.+. .+++++++++ |||.+|+|.+++++++++++.
T Consensus 384 A~~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~--ldp~~~~~~a~~~~~~~~~~~ 445 (450)
T 1re5_A 384 AHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRL--LDPAHYLGQARVWVARAVSEH 445 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHTCHHHHHHSCHHHHHHH--TCGGGCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHhChhhccCCCHHHHHHh--cCHHHHhhhHHHHHHHHHhhc
Confidence 99999999998878888999988654 2677777764 999999999999999998766
No 9
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7e-81 Score=677.42 Aligned_cols=428 Identities=19% Similarity=0.173 Sum_probs=333.3
Q ss_pred cccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCC--CCcccHHHHHHHHHHHhcCCcccHHHHHH
Q 009005 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE--VPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (546)
Q Consensus 82 ~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~Gi--Ip~~aa~ai~~l~~~~~~~~~~d~~~i~~ 159 (546)
.++||+++||+++ ++|+.+|||+++++.|+++|+||+++++ ++|+ ||++++++| .+.+++| |.+.+++
T Consensus 6 ~~~spl~~ry~~~-~~m~~~fs~~~~~~~~~~~e~Ala~a~~---~~Gl~~i~~~~~~~I---~~~l~~i---~~~~~~~ 75 (478)
T 1yis_A 6 KFESVLSTRYCKN-SPLVSILSETNKATLWRQLWIWLAEAEK---ELGLKQVTQDAIDEM---KSNRDVF---DWPFIRS 75 (478)
T ss_dssp SCCCHHHHTTTTT-CTHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTCTTSCHHHHHHH---HHTTTCC---CHHHHHH
T ss_pred cCCCCcccccCCh-HHHHHHcCchHHHHHHHHHHHHHHHHHH---HcCCCCCCHHHHHHH---HHHHHhC---CHHHHhh
Confidence 5889999999974 3499999999999999999999999999 8999 996555554 4444444 5677777
Q ss_pred HHhhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 009005 160 IERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANI 239 (546)
Q Consensus 160 ~~~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t 239 (546)
.++.++|||.+++++|++++|+ +++|||+|+||||++||+..|++|+++.. |.+.|.+|+++|.++|++|++|
T Consensus 76 ~e~~~~~DV~a~v~~l~e~~g~------~~~~iH~G~TS~Di~~ta~~L~lr~~l~~-l~~~L~~L~~~L~~~A~~~~~~ 148 (478)
T 1yis_A 76 EERKLKHDVMAHNHAFGKLCPT------AAGIIHLGATSCFVQDNADLIAYRDSIDH-ILKRFATVIDRLAAFSLKNKEV 148 (478)
T ss_dssp HHHHSSCHHHHHHHHHHHHCTT------TGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCcHHHHHHHHHHhhhh------chhheeCCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC
Confidence 8889999999999999999975 78999999999999999999999999995 9999999999999999999999
Q ss_pred cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCCh---hhHHHHHHHHcC
Q 009005 240 SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNW---PQITEDFVKSLG 313 (546)
Q Consensus 240 ~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~---~~v~~~la~~LG 313 (546)
||+||||+||||||||||||++|+++|.|+++||.++. ..+.+||++||+++++..|| +|| +.+.+++++.||
T Consensus 149 ~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg~~GT~a~~~~~f~-~d~~~~~~v~~~~a~~LG 227 (478)
T 1yis_A 149 VTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFA-GDESKVEALDELVTKKAN 227 (478)
T ss_dssp EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCTTTSSCHHHHHHTT-TCHHHHHHHHHHHHHHTT
T ss_pred eeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccchhhhcccC-cchhhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999874 23335889999888777788 788 667799999999
Q ss_pred CCC-CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhh
Q 009005 314 LSF-NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392 (546)
Q Consensus 314 l~~-~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la 392 (546)
|+. ++..+|+.+||+++|++++++.++++|+|||+|+|+|+++|++.+++..+++||||||||+||+.+|+++| ++
T Consensus 228 ~~~~~~~s~~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a 304 (478)
T 1yis_A 228 FSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQIGSSAMPYKKNPMKSERCCA---LS 304 (478)
T ss_dssp CSCBCSSCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEECC-------------CCCCHHHHHHHH---HH
T ss_pred cCCCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccccCCCCccccCCcccCCHHHHHHHH---HH
Confidence 995 34455888999999999999999999999999999999999999877788999999999999999999988 45
Q ss_pred hhHHHHHHhhc---chhhhcccCCcchhHHh-HHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHH
Q 009005 393 NEDLSFLSMKL---PISRWQRDLTDSTVLRN-MGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTV 467 (546)
Q Consensus 393 ~~~~~~~~~~l---~~~~~erDl~~s~~~~~-l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~ 467 (546)
+.+.|+....+ ...+||||+.+|.+.|. +..++..+..++..+..++++|+||++||+++++.++++ +||.+++.
T Consensus 305 ~~v~g~~~~~~~~~~~~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~~~~~~~te~v~~~ 384 (478)
T 1yis_A 305 RKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMM 384 (478)
T ss_dssp HHHHTSHHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhCCChHHHHHHHHH
Confidence 56777654322 12257999999988874 456666777788888999999999999999999999875 78988888
Q ss_pred HHhcCch--hHHHHHHHHhhccc----cccccHHHHHhhCC--CCHHHHHhcccc-CcCcccCchHHHHHHHHH
Q 009005 468 MRRYGVP--EPYEKLKELTRGKV----VTKESIREFIIGLE--LPEEAKANLLNL-TPHNYVGAAAELARNVDV 532 (546)
Q Consensus 468 l~~~G~~--~Ah~iv~~~~~~a~----~~~~~l~e~~~~~~--l~~~~~~~l~~l-dP~~~~G~a~~~v~~~~~ 532 (546)
|.+.|++ +||++|+++++.+. .++.+++++..... +++++++++ | ||.+|+|+++++|+++++
T Consensus 385 l~~~G~~~~~Ah~~v~~~a~~~~~~v~~~g~~~~~l~~~~~~~l~~~el~~~--l~dp~~~~g~a~~~v~~~~~ 456 (478)
T 1yis_A 385 LTEEGVDRQQAHAVIRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGL--VNNPINFTGRCVSQTESFIA 456 (478)
T ss_dssp C---------------------------------CCCTTTTSTTTHHHHHHH--HHCGGGGSTTHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHH--HhCHHHHcCcHHHHHHHHHH
Confidence 8777885 99999999887432 24444443322222 457777774 8 999999999999999984
No 10
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=3.7e-80 Score=663.69 Aligned_cols=412 Identities=21% Similarity=0.270 Sum_probs=356.8
Q ss_pred ccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCCch
Q 009005 89 GRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDV 168 (546)
Q Consensus 89 ~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~hdv 168 (546)
+||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|.+. + +| |.+.+.+.+..++|||
T Consensus 2 ~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a---~-~~---d~~~i~~~~~~~~~dV 69 (429)
T 1c3c_A 2 ERYSL--SPMKDLWTEEAKYRRWLEVELAVTRAYE---ELGMIPKGVTERIRNN---A-KI---DVELFKKIEEKTNHDV 69 (429)
T ss_dssp GGGCC--TTHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHHHHH---C-CC---CHHHHHHHHHHHCCHH
T ss_pred CCccc--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHh---C-CC---CHHHHHHHHhccCCCh
Confidence 48886 6999999999999999999999999999 8999999888887542 2 44 5778888888899999
Q ss_pred hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Q 009005 169 KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (546)
Q Consensus 169 ~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q 248 (546)
+++|+.|.+++|+ .++|||+|+|||||++|+++|++|+++.. |.+.|.+|+++|.++|++|++|+|+||||+|
T Consensus 70 ia~~~~l~e~~g~------~g~~vH~g~SsnD~~~Ta~~l~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ 142 (429)
T 1c3c_A 70 VAFVEGIGSMIGE------DSRFFHYGLTSSDVLDTANSLALVEAGKI-LLESLKEFCDVLWEVANRYKHTPTIGRTHGV 142 (429)
T ss_dssp HHHHHHHHHHHGG------GGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEEEETTE
T ss_pred HHHHHHHHHHcCc------ccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeecCcCCC
Confidence 9999999999985 58999999999999999999999999995 9999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC-cccc
Q 009005 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-TQIE 324 (546)
Q Consensus 249 ~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~-~~~~ 324 (546)
|||||||||||++|+++|.|+++||.++. ..+++|||+||+.++ | +.+++++++.|||+.++.+ +++
T Consensus 143 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~----~----~~~~~~~a~~LGl~~~~~~d~~~- 213 (429)
T 1c3c_A 143 HAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANV----P----PEVEEKALSYLGLKPEPVSTQVV- 213 (429)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCSSS----C----HHHHHHHHHHTTCEECSSCSSSC-
T ss_pred cCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhcCCccC----C----HHHHHHHHHHcCCCCCCCCcCcc-
Confidence 99999999999999999999999999986 678888999996432 3 3578999999999987766 555
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhh
Q 009005 325 THDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK 402 (546)
Q Consensus 325 ~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~ 402 (546)
+||+++|++++++.++++|+|||+|+++|++ +|++.+++.++++||||||||+||+.+|+++++++.+......+..+
T Consensus 214 ~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~ 293 (429)
T 1c3c_A 214 PRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLEN 293 (429)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999986 77788766668999999999999999999999666433222223444
Q ss_pred cchhhhcccCCcchhHHhH-HhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHHHH-h-cCchhHHH
Q 009005 403 LPISRWQRDLTDSTVLRNM-GGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTVMR-R-YGVPEPYE 478 (546)
Q Consensus 403 l~~~~~erDl~~s~~~~~l-~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~l~-~-~G~~~Ah~ 478 (546)
++ ++||||+++|.+.|.+ ++++..+..++..+..++++|+||++||+++++.++++ +||.++++|. + +|+++||+
T Consensus 294 ~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la~~L~~~gig~~~A~~ 372 (429)
T 1c3c_A 294 IA-LWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYD 372 (429)
T ss_dssp TC-CSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHH
T ss_pred CC-ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHHHHHHhcCCCHHHHHH
Confidence 55 4589999999888754 58888888999999999999999999999999988874 8999999995 4 67789999
Q ss_pred HHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHHH
Q 009005 479 KLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNVD 531 (546)
Q Consensus 479 iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~~ 531 (546)
+|+++++.+..++.++++++.+. .+++++++++ +||.+|+|.+++++++++
T Consensus 373 iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~--ldp~~~~~~a~~~~~~~~ 428 (429)
T 1c3c_A 373 IVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEEL--FDISYYLKHVDHIFERFE 428 (429)
T ss_dssp HHHHHHHHHHTSSSCHHHHHHTCHHHHTTCCHHHHHHT--TCTHHHHTTHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHhCChhhhccCCHHHHHHh--CCHHHHhhhHHHHHHHHh
Confidence 99999998888889999988654 3677778774 999999999999998764
No 11
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=1.7e-79 Score=660.72 Aligned_cols=414 Identities=20% Similarity=0.271 Sum_probs=360.9
Q ss_pred cCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhhhCC
Q 009005 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166 (546)
Q Consensus 87 ~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~~~h 166 (546)
..+||.. ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|.+ .+ +| |++.+...+..++|
T Consensus 10 ~~~~~~~--~~~~~i~sd~~~i~~~~~v~~A~a~a~~---~~G~i~~~~a~~I~~---a~-~~---d~~~i~~~~~~~~~ 77 (444)
T 2pfm_A 10 MISRYTR--PEMGAIWTEENKFKAWLEVEILACEAWA---ELGDIPKEDVKKIRE---HA-SF---DIDRIYEIEKETRH 77 (444)
T ss_dssp -CCTTCC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HHTSSCHHHHHHHHH---HC-CC---CHHHHHHHHHHHCC
T ss_pred HHHhcch--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHH---hC-CC---CHHHHHHHhccCCC
Confidence 3468984 7999999999999999999999999999 899999877777643 22 44 57788888888999
Q ss_pred chhhHHHHHHHHhh-cCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Q 009005 167 DVKAVEYFLKQKCQ-SQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245 (546)
Q Consensus 167 dv~a~e~~L~e~~g-~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRT 245 (546)
||+++++.|.+++| . +.++|||+|+|||||++|+++|++|+++.. |.+.|.+|+++|.++|++|++++|+|||
T Consensus 78 dVia~~~~l~e~~g~g-----~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~~GrT 151 (444)
T 2pfm_A 78 DVVAFTRAVSETPALG-----EERKWVHYGLTSTDVVDTALSYILKQANEI-ILKDLENFVSILANKAKEHKYTIMMGRT 151 (444)
T ss_dssp HHHHHHHHHHTCTTCC-----GGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCC-----cccccccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCeeeccc
Confidence 99999999999995 2 368999999999999999999999999995 9999999999999999999999999999
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC-c
Q 009005 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-T 321 (546)
Q Consensus 246 H~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~-~ 321 (546)
|+||||||||||||++|+++|.|+++||.++. ..+++||||||+.++ | +.+++++++.|||+.++.+ +
T Consensus 152 HlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~----~----~~~~~~~a~~LGl~~~~~~d~ 223 (444)
T 2pfm_A 152 HGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANI----D----PFVEKYVCENLGLEAAPISTQ 223 (444)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCTTS----C----HHHHHHHHHHTTCEECSSCSS
T ss_pred CCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhhccCCcC----C----HHHHHHHHHHhCCCCCCCCcC
Confidence 99999999999999999999999999999986 677888999996432 3 3578999999999987766 5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHH
Q 009005 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (546)
Q Consensus 322 ~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~ 399 (546)
++ +||+++|++++++.++++|+|||+|+++|++ +|++.+++.++++|||||||||||+.+|+++++++.+......+
T Consensus 224 ~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~ 302 (444)
T 2pfm_A 224 TL-QRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTA 302 (444)
T ss_dssp SC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 55 9999999999999999999999999999986 78788766668999999999999999999999666433333333
Q ss_pred HhhcchhhhcccCCcchhHHhH-HhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHHHH-h-cCchh
Q 009005 400 SMKLPISRWQRDLTDSTVLRNM-GGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTVMR-R-YGVPE 475 (546)
Q Consensus 400 ~~~l~~~~~erDl~~s~~~~~l-~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~l~-~-~G~~~ 475 (546)
..+++ ++||||+++|.+.|.+ ++++..+..++..+.+++++|+||++||+++++.++++ +||.++++|. + +|+++
T Consensus 303 ~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~la~~L~~~gig~~~ 381 (444)
T 2pfm_A 303 YENVP-LWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREE 381 (444)
T ss_dssp HHTSC-CCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHH
T ss_pred HHhCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHHHHHHHHhcCCCHHH
Confidence 44555 4689999999887754 47888888999999999999999999999999988874 8999999995 4 67889
Q ss_pred HHHHHHHHhhccccccccHHHHHhhC-----CCCHHHHHhccccCcCcccCchHHHHHHH
Q 009005 476 PYEKLKELTRGKVVTKESIREFIIGL-----ELPEEAKANLLNLTPHNYVGAAAELARNV 530 (546)
Q Consensus 476 Ah~iv~~~~~~a~~~~~~l~e~~~~~-----~l~~~~~~~l~~ldP~~~~G~a~~~v~~~ 530 (546)
||++|+++++.+..++.++++++.+. .+++++++++ |||.+|+|.++++++++
T Consensus 382 A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~--ldp~~~~~~a~~~~~~~ 439 (444)
T 2pfm_A 382 AYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINEC--FNYEHHMQHVDTIFERL 439 (444)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHTCHHHHTTSCHHHHHHH--TCGGGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHhcchhhhccCCHHHHHHh--CCHHHHHhHHHHHHHHH
Confidence 99999999998888888999988654 3677777774 99999999999999986
No 12
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=3.5e-77 Score=635.53 Aligned_cols=382 Identities=25% Similarity=0.284 Sum_probs=320.4
Q ss_pred cccCccCccCCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHH
Q 009005 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (546)
Q Consensus 82 ~~~sp~~~ry~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~ 161 (546)
|++||+++||++ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|.+. +| |.+.+...+
T Consensus 1 m~~sp~~~ry~~--~~~~~i~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a-----~~---d~~~~~~~~ 67 (403)
T 1dof_A 1 MHVSPFDWRYGS--EEIRRLFTNEAIINAYLEVERALVCALE---ELGVAERGCCEKVNKA-----SV---SADEVYRLE 67 (403)
T ss_dssp -CCCGGGTTSSC--HHHHTTSSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHHHHC-----CC---CTTTC----
T ss_pred CCCCCcccccCc--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHC-----CC---CHHHHHHHh
Confidence 678999999996 7999999999999999999999999999 8999999888887431 34 345566677
Q ss_pred hhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 009005 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (546)
Q Consensus 162 ~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m 241 (546)
.+++|||+++|+.|.+++| ++|||+|+|||||++|+++|++|+++.. +.+.|.+|+++|.++|++|++++|
T Consensus 68 ~~~~~dVia~~~~l~e~~G--------g~~vH~g~SsnD~~~Ta~~l~~r~~l~~-l~~~l~~L~~~L~~~A~~~~~~~~ 138 (403)
T 1dof_A 68 RETGHDILSLVLLLEQKSG--------CRYVHYGATSNDIIDTAWALLIRRALAA-VKEKARAVGDQLASMARKYKTLEM 138 (403)
T ss_dssp ----CHHHHHHHHHHHHHC--------CSCTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hccCCcHHHHHHHHHHHcC--------CCcccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCee
Confidence 7789999999999999985 4799999999999999999999999995 999999999999999999999999
Q ss_pred cccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCC
Q 009005 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (546)
Q Consensus 242 ~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~ 318 (546)
+||||+|||+||||||||++|+++|.|+ +||.++. ..+++||||||+.+++. | + +.+++++++.|||+.++
T Consensus 139 ~GrTHlQ~A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGgAvGt~~~~~~-~---~-~~~~~~~a~~lGl~~~~ 212 (403)
T 1dof_A 139 VGRTHGQWAEPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGGAVGTMASWGE-L---G-LEVRRRVAERLGLPHHV 212 (403)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCCTTSSCGGGGG-G---H-HHHHHHHHHHTTCCBCS
T ss_pred eccccCcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccHHHhhCccccc-c---c-HHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999 9999985 67888999999665432 2 2 46789999999999988
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 319 ~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
.+++..+||+++|++++++.++++|+|||+|+++|++ +|++++ + + +||||||||+||+.+|+++++++ .+.
T Consensus 213 ~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~ei~l--p-~-~GSSiMP~K~NP~~~E~i~~~a~---~v~ 285 (403)
T 1dof_A 213 ITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEVVE--G-G-GGSSAMPHKANPTASERIVSLAR---YVR 285 (403)
T ss_dssp SCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEES--C-C----------CCCHHHHHHHHHHH---HHH
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCeEeC--C-C-CccCCCCCCCCchHHHHHHHHHH---HHH
Confidence 7754449999999999999999999999999999986 777776 3 6 99999999999999999999655 455
Q ss_pred HHH---HhhcchhhhcccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhH-HHHHHHHHHH-h
Q 009005 397 SFL---SMKLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEV-LAEPIQTVMR-R 470 (546)
Q Consensus 397 ~~~---~~~l~~~~~erDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i-~aE~~~~~l~-~ 470 (546)
|+. ..+++ ++||||+++|.+.| .+++++..+..++..+..++++|+||++||+++++.++++ +||.++++|. +
T Consensus 286 g~~~~~~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~~l~~~L~~~ 364 (403)
T 1dof_A 286 ALTHVAFENVA-LWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKE 364 (403)
T ss_dssp HHHHHHHHTTC-CCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHcCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHHHHHHHHhhc
Confidence 543 34455 45899999998776 4568888888999999999999999999999999988875 8999999995 4
Q ss_pred -cCchhHHHHHHHHhhccccccc-cHHHHHh
Q 009005 471 -YGVPEPYEKLKELTRGKVVTKE-SIREFII 499 (546)
Q Consensus 471 -~G~~~Ah~iv~~~~~~a~~~~~-~l~e~~~ 499 (546)
+|+++||++|+++++.+..++. ++++++.
T Consensus 365 gig~~~A~~iv~~~~~~a~~~g~~~l~e~~~ 395 (403)
T 1dof_A 365 GASRAEAYKKAKEVKALTFEYQKWPVERLIE 395 (403)
T ss_dssp TCCHHHHHHHHTTCCCCCCGGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcCHHHHHH
Confidence 6788999999999998888888 9998864
No 13
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=5.7e-75 Score=628.99 Aligned_cols=414 Identities=17% Similarity=0.187 Sum_probs=336.8
Q ss_pred CccCccCCCCccchHhhcc-----cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHH
Q 009005 85 SPLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (546)
Q Consensus 85 sp~~~ry~~~~~~m~~ifs-----d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~ 159 (546)
.+|++||.+.+..+...|+ |+.++++|+.||+||+++++ ++|+||++.+++|.+.+ +++. +.+.+
T Consensus 9 ~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~---~~i~----~~~~~ 78 (468)
T 1k7w_A 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALE---KAGILTKTELEKILSGL---EKIS----EEWSK 78 (468)
T ss_dssp ----------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHH---HHHH----HHHHH
T ss_pred cccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHH---HHHH----hhhhc
Confidence 4799999988888999999 99999999999999999999 89999987777775322 2221 12222
Q ss_pred HH---hhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009005 160 IE---RVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (546)
Q Consensus 160 ~~---~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~ 235 (546)
.+ ..++||+ +++++++.+++|+ .++|||+|+|||||++|+++|++|+++.. |.+.|.+|+++|.++|++
T Consensus 79 ~~f~~~~~~~dv~m~~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~-l~~~L~~L~~~L~~~A~~ 151 (468)
T 1k7w_A 79 GVFVVKQSDEDIHTANERRLKELIGD------IAGKLHTGRSRNDQVVTDLKLFMKNSLSI-ISTHLLQLIKTLVERAAI 151 (468)
T ss_dssp TCCCCCTTCCSHHHHHHHHHHHHHCG------GGGGGGTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccCccCCCCCchHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 21 3479999 8999999999974 68999999999999999999999999995 999999999999999999
Q ss_pred cccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hccccccc--ccCccccccCCCCCChhhHHHHHHH
Q 009005 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFVK 310 (546)
Q Consensus 236 ~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGA--vGT~aa~~~~~p~~d~~~v~~~la~ 310 (546)
|++|+|+||||+||||||||||||++|+++|.|+++||.++. ..+++||+ +||. +| +| ++.+++
T Consensus 152 ~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~------~~-~~----~~~la~ 220 (468)
T 1k7w_A 152 EIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNP------LD-ID----REMLRS 220 (468)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCT------TC-CC----HHHHHH
T ss_pred ccCCEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCC------CC-CC----hHHHHH
Confidence 999999999999999999999999999999999999999985 46667766 4772 23 33 788999
Q ss_pred HcCCCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhh
Q 009005 311 SLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSE 386 (546)
Q Consensus 311 ~LGl~~~~~~~--~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~ 386 (546)
.|||+.++.++ |+.+||+++|++++++.++++|+|||+|+++|++ +|++++ .+.+.+||||||||+||+.+|+++
T Consensus 221 ~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E~i~ 299 (468)
T 1k7w_A 221 ELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTL-SDAFSTGASLMPQKKNPDSLELIR 299 (468)
T ss_dssp HHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCEEETTEEEEEECHHHHHHH
T ss_pred HcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceec-cCCCCCCCCCCCCCCCcHHHHHHH
Confidence 99999755544 8889999999999999999999999999999986 898887 344557999999999999999999
Q ss_pred hchhhhhhHHHHHH---hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHH
Q 009005 387 GNLGKANEDLSFLS---MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEP 463 (546)
Q Consensus 387 g~~~la~~~~~~~~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~ 463 (546)
++++.+......+. .++|. .|+||++++. ..+++++..+..++..+..++++|+||+++|+++++.+ +++|.
T Consensus 300 ~~a~~v~g~~~~~~~~~~~~p~-~~~rDl~~~~--~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~--~~at~ 374 (468)
T 1k7w_A 300 SKAGRVFGRLASILMVLKGLPS-TYNKDLQEDK--EAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPE--MLATD 374 (468)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCS-SCCGGGGGHH--HHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCCGG--GGHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCch-HhhhhhhhhH--hHHHHHHHHHHHHHHHHHHHhCCCEECHHHHHHHhhCC--ChHHH
Confidence 96664333222222 55676 5899999963 24567788888889999999999999999999999976 78888
Q ss_pred HHHHHHhcCch--hHHHHHHHHhhccccccccHHHHHhh------CCCCHHHHHhccccCcCccc-------CchHHHHH
Q 009005 464 IQTVMRRYGVP--EPYEKLKELTRGKVVTKESIREFIIG------LELPEEAKANLLNLTPHNYV-------GAAAELAR 528 (546)
Q Consensus 464 ~~~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~------~~l~~~~~~~l~~ldP~~~~-------G~a~~~v~ 528 (546)
++..|.+.|++ +||++++++++.+..++.++++++.+ ..++ +++++ .+||..|+ |++|+.|+
T Consensus 375 l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~l~-~~~~~--~ldp~~~~~~r~~~GG~a~~~v~ 451 (468)
T 1k7w_A 375 LALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFS-SDVSQ--VFNFVNSVEQYTALGGTAKSSVT 451 (468)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHTTTCCGGGCCHHHHHHHCTTCC-GGGGG--GSCHHHHHTTCCSTTSSSHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH-HHHHH--hCCHHHHHhcCCCCCCCCHHHHH
Confidence 88888766876 99999999999887777777765322 1244 44555 48888765 99999999
Q ss_pred HHHHHhh
Q 009005 529 NVDVAVN 535 (546)
Q Consensus 529 ~~~~~~~ 535 (546)
++++.++
T Consensus 452 ~~i~~~~ 458 (468)
T 1k7w_A 452 TQIEQLR 458 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 14
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=3.1e-73 Score=613.72 Aligned_cols=415 Identities=18% Similarity=0.218 Sum_probs=342.8
Q ss_pred ccCccCCCCccchHhhccc-----chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHH
Q 009005 86 PLDGRYWSKVKDLAPYMSE-----YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNI 160 (546)
Q Consensus 86 p~~~ry~~~~~~m~~ifsd-----~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~ 160 (546)
.|++||.+++++....|+. ..++++++.+++||+++++ ++|+||++.+++|.+.+ +++. +++.+.
T Consensus 3 ~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~---~~Gii~~~~a~~I~~a~---~~i~----~~~~~~ 72 (457)
T 1tj7_A 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALV---TVGVLTAEEQAQLEEAL---NVLL----EDVRAR 72 (457)
T ss_dssp CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHH---HHHH----HHHHHC
T ss_pred ccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHH---HHHH----hhHhcC
Confidence 6999999888888888884 8899999999999999999 89999987777775433 2221 223333
Q ss_pred Hh----hhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009005 161 ER----VTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (546)
Q Consensus 161 ~~----~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~ 235 (546)
+. .++||| +++++++.+++|+ .++|||+|+||||+++|+++|++|+++.. |.+.|.+|+++|.++|++
T Consensus 73 ~~~~~~~~~~dv~~~v~~~l~e~~g~------~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~-l~~~l~~l~~~L~~~A~~ 145 (457)
T 1tj7_A 73 PQQILESDAEDIHSWVEGKLIDKVGQ------LGKKLHTGRSRNDQVATDLKLWCKDTVSE-LLTANRQLQSALVETAQN 145 (457)
T ss_dssp GGGGGGSCCSSHHHHHHHHHHHHHGG------GGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred CcCcCCCCCCcHHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33 349999 5899999999985 67999999999999999999999999995 999999999999999999
Q ss_pred cccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hccccccc--ccCccccccCCCCCChhhHHHHHHH
Q 009005 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFVK 310 (546)
Q Consensus 236 ~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGA--vGT~aa~~~~~p~~d~~~v~~~la~ 310 (546)
|++|+|+||||+||||||||||||++|+++|.|+++||.++. ..+++||+ +||. ++ +| ++.+++
T Consensus 146 ~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~------~~-~~----~~~la~ 214 (457)
T 1tj7_A 146 NQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTA------YE-ID----REQLAG 214 (457)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCS------SC-CC----HHHHHH
T ss_pred ccCCeeeccccCcCCeechHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCC------CC-CC----HHHHHH
Confidence 999999999999999999999999999999999999999985 46667766 4762 23 44 688999
Q ss_pred HcCCCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHhhhh
Q 009005 311 SLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSE 386 (546)
Q Consensus 311 ~LGl~~~~~~~--~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~ 386 (546)
.|||+.++.++ |+.+||+++|++++++.++++|+|||+|+++|++ +|++++ .+...+||||||||+||+.+|+++
T Consensus 215 ~LGl~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E~i~ 293 (457)
T 1tj7_A 215 WLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVEL-SDRVTSGSSLMPQKKNPDALELIR 293 (457)
T ss_dssp HHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCBCCTTCTTCCBCHHHHHHH
T ss_pred HcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceec-cCCCCCCCCCCCCCCCcHHHHHHH
Confidence 99999766554 8889999999999999999999999999999986 898886 344558999999999999999999
Q ss_pred hchhhhhhHHHHH---HhhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHHHHH
Q 009005 387 GNLGKANEDLSFL---SMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVLAEP 463 (546)
Q Consensus 387 g~~~la~~~~~~~---~~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~aE~ 463 (546)
++++.+......+ ..++|. .|+||+++.. ..+++++..+..++..+..++++|+||++||+++++.++ +++|.
T Consensus 294 ~~a~~v~g~~~~~~~~~~~~p~-~~~RDl~~~~--~~l~~s~~~~~~~l~~~~~~l~gl~vn~~~m~~~l~~~~-~~at~ 369 (457)
T 1tj7_A 294 GKCGRVQGALTGMMMTLKGLPL-AYNKDMQEDK--EGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGY-ANATE 369 (457)
T ss_dssp HTHHHHHHHHHHHHHHHTTCCS-SCCGGGGGHH--HHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHTSTT-TTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcH-HhhcchhhHH--hHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhcCC-chHHH
Confidence 9666433332223 455675 5899999742 245678888888999999999999999999999998665 57888
Q ss_pred HHHHHHhcCch--hHHHHHHHHhhccccccccHHHHHhh--C---CCCHHHHHhccccCcCc-------ccCchHHHHHH
Q 009005 464 IQTVMRRYGVP--EPYEKLKELTRGKVVTKESIREFIIG--L---ELPEEAKANLLNLTPHN-------YVGAAAELARN 529 (546)
Q Consensus 464 ~~~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~--~---~l~~~~~~~l~~ldP~~-------~~G~a~~~v~~ 529 (546)
++..|.+.|++ +||++++++++.+..++.++++++.+ . .+.+++++++ +||.. ++|++|+.|++
T Consensus 370 l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~--ldp~~~v~~r~~~gG~a~~~v~~ 447 (457)
T 1tj7_A 370 LADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPI--LSLQSCLDKRAAKGGVSPQQVAQ 447 (457)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTCTTCCTTHHHH--TSHHHHHHTCCSTTCCSHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhhhcHHHHHHh--CCHHHHHhccCCCCCCCHHHHHH
Confidence 88888666754 99999999999887777787775422 1 1234455553 78775 45999999999
Q ss_pred HHHHhh
Q 009005 530 VDVAVN 535 (546)
Q Consensus 530 ~~~~~~ 535 (546)
+++.++
T Consensus 448 ~i~~~~ 453 (457)
T 1tj7_A 448 AIAFAQ 453 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998774
No 15
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=2.6e-73 Score=615.10 Aligned_cols=417 Identities=18% Similarity=0.182 Sum_probs=335.0
Q ss_pred cCccCccCCCCccchHhhccc-----chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHH
Q 009005 84 LSPLDGRYWSKVKDLAPYMSE-----YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK 158 (546)
Q Consensus 84 ~sp~~~ry~~~~~~m~~ifsd-----~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~ 158 (546)
-..|++||.+.+......|+. ..++++++.+|+||+++++ ++|+||++.+++|.+.+ +++. +.+.
T Consensus 3 ~~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~---~~Gii~~~~a~~I~~a~---~~i~----~~~~ 72 (462)
T 2e9f_A 3 HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLH---AVGLLSAEELEAILKGL---DRIE----EEIE 72 (462)
T ss_dssp -----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHH---HHHH----HHHH
T ss_pred ccccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHH---HHHH----hhHh
Confidence 356999998888888888886 7899999999999999999 89999987777775322 2221 1222
Q ss_pred HHH---hhhCCch-hhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009005 159 NIE---RVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAK 234 (546)
Q Consensus 159 ~~~---~~~~hdv-~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~ 234 (546)
+.+ ..++||+ +++|+++.+++|+ .++|||+|+|||||++|+++|++|+++.. |.+.|.+|+++|.++|+
T Consensus 73 ~~~f~~~~~~~dv~~~~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~-l~~~l~~L~~~L~~~A~ 145 (462)
T 2e9f_A 73 AGTFPWREELEDVHMNLEARLTELVGP------PGGKLHTARSRNDQVATDLRLYLRGAIDE-LLALLLALRRVLVREAE 145 (462)
T ss_dssp HTCSCCCGGGCSHHHHHHHHHHHHHCT------THHHHTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cccCCcCCCCCchHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 221 3479999 9999999999984 67999999999999999999999999995 99999999999999999
Q ss_pred Hcccc--cccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hccccccc--ccCccccccCCCCCChhhHHHH
Q 009005 235 DNANI--SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITED 307 (546)
Q Consensus 235 ~~~~t--~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGA--vGT~aa~~~~~p~~d~~~v~~~ 307 (546)
+|+++ +|+||||+||||||||||||++|+++|.|+++||.++. ..+++||+ +||. +| +| ++.
T Consensus 146 ~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~------~~-~~----~~~ 214 (462)
T 2e9f_A 146 KHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTG------FP-ID----RHF 214 (462)
T ss_dssp HTTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCS------SC-CC----HHH
T ss_pred HccCcCccccCcccCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCC------CC-CC----HHH
Confidence 99999 99999999999999999999999999999999999985 56677776 4762 33 33 788
Q ss_pred HHHHcCCCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcceecccCCCCCCCCCCCCCCChhhHh
Q 009005 308 FVKSLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFE 383 (546)
Q Consensus 308 la~~LGl~~~~~~~--~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s--~G~~~~~~~~~~~GSS~MPhKrNPv~~E 383 (546)
+++.|||+.++.++ |+.+||+++|++++++.++++|+|||+|+++|++ +|++++ .+...+||||||||+||+.+|
T Consensus 215 ~a~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E 293 (462)
T 2e9f_A 215 TARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEV-PDAFATGSSIMPQKKNPDILE 293 (462)
T ss_dssp HHHHTTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCEECSSSSSCEECHHHH
T ss_pred HHHHhCCCCCCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEe-cCCCCCCCCCCCCCcCCHHHH
Confidence 99999999765554 8889999999999999999999999999999987 998886 344557999999999999999
Q ss_pred hhhhchhhhhhHHHHHH---hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHHHhhhccccCHHHHHHHHhhhhhHH
Q 009005 384 NSEGNLGKANEDLSFLS---MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVNEARLSDDLNHAWEVL 460 (546)
Q Consensus 384 ~~~g~~~la~~~~~~~~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~nl~~~~~i~ 460 (546)
+++++++.+......+. .++|. .|+||++++. ..+++++..+..++..+..++++|+||++||+++++.++ ++
T Consensus 294 ~i~~~a~~v~g~~~~~~~~~~~~p~-~~~rDl~~~~--~~l~~s~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~-~~ 369 (462)
T 2e9f_A 294 LIRAKAGRVLGAFVGLSAVVKGLPL-AYNKDLQEDK--EPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGY-TL 369 (462)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTTCCS-SBCGGGGGGH--HHHHHHHHHHHHHHHHHHHHGGGCEECHHHHHHHHSCSS-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCch-HhhhchhhhH--hHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHhcCc-cH
Confidence 99996664333222222 45675 5899999963 245677888888999999999999999999999999765 57
Q ss_pred HHHHHHHHHhcCch--hHHHHHHHHhhccccccccHHHHHhh------CCCCHHHHHhccccCcCccc-------CchHH
Q 009005 461 AEPIQTVMRRYGVP--EPYEKLKELTRGKVVTKESIREFIIG------LELPEEAKANLLNLTPHNYV-------GAAAE 525 (546)
Q Consensus 461 aE~~~~~l~~~G~~--~Ah~iv~~~~~~a~~~~~~l~e~~~~------~~l~~~~~~~l~~ldP~~~~-------G~a~~ 525 (546)
+|.++..|.+.|++ +||++++++++.+..++.++++++.+ ..++ +++++ .+||..|+ |++|+
T Consensus 370 at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~l~-~~l~~--~ldp~~~~~~r~~~gG~a~~ 446 (462)
T 2e9f_A 370 ATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFA-EDALP--LLRLETAIHRRRSYGGTAPE 446 (462)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHCTTCC-GGGGG--GGSHHHHTTSCCSTTSSCHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhH-HHHHH--hCCHHHHHhcCcCCCCCCHH
Confidence 78888888555665 99999999999887777777765322 1244 44555 48888765 99999
Q ss_pred HHHHHHHHhhH
Q 009005 526 LARNVDVAVNL 536 (546)
Q Consensus 526 ~v~~~~~~~~~ 536 (546)
.|++++++++-
T Consensus 447 ~v~~~i~~~~~ 457 (462)
T 2e9f_A 447 AVRERLEEAKK 457 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988743
No 16
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=6e-69 Score=563.80 Aligned_cols=342 Identities=18% Similarity=0.141 Sum_probs=278.9
Q ss_pred ccCccCcc-CCCCccchHhhcccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHH
Q 009005 83 ALSPLDGR-YWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (546)
Q Consensus 83 ~~sp~~~r-y~~~~~~m~~ifsd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~ 161 (546)
..+|+-+| |+ .++|+.+|||+++|++|++||+||+++++ ++|+||++.+++|.+ .++++. .|.+.+...+
T Consensus 6 ~~~~l~~~~~~--~~~m~~~fs~~~~i~~~~~ve~A~a~a~~---~~G~i~~~~a~~I~~---~~~~i~-~~~~~~~~~~ 76 (359)
T 2fel_A 6 FEHPFLSGLFG--DSEIIELFSAKADIDAMIRFETALAQAEA---EASIFADDEAEAIVS---GLSEFA-ADMSALRHGV 76 (359)
T ss_dssp TSCTTTHHHHC--CHHHHGGGSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHH---HHHTCC-CCHHHHHHHH
T ss_pred ccccccccccC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHH---HHHhcc-ccHHHHHhhc
Confidence 34565665 45 46899999999999999999999999999 999999877777653 334433 2567777777
Q ss_pred hhhCCchhhHHHHHHHHhhcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 009005 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (546)
Q Consensus 162 ~~~~hdv~a~e~~L~e~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m 241 (546)
...+|++.+++..|.+.+|. +.++|||+|+|||||+||+++|++|+++.. |.+.|.+|+++|.++|++|++|||
T Consensus 77 ~~~~~~~~~~~~~l~~~~g~-----~~~~~vH~G~SsnDv~~Ta~~l~lr~~l~~-l~~~L~~l~~~L~~~A~~~~~~~~ 150 (359)
T 2fel_A 77 AKDGVVVPELIRQMRAAVAG-----QAADKVHFGATSQDVIDTSLMLRLKMAAEI-IATRLGHLIDTLGDLASRDGHKPL 150 (359)
T ss_dssp HHHSSSHHHHHHHHHTTSCG-----GGGGGTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cccCCcHHHHHHHHHHHcCc-----cccchhcCCCCHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcEe
Confidence 88899999999999998874 478999999999999999999999999995 999999999999999999999999
Q ss_pred cccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccccccCccccccCCCCCChhhHHHHHHHHcCCCCCC
Q 009005 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (546)
Q Consensus 242 ~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gGAvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~ 318 (546)
+||||+||||||||||||++|+++|.|+++||.++. ..+++|||+||++++ | .+|+.+++++++.|||+.++
T Consensus 151 ~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGT~~~~----~-~~~~~~~~~~a~~LG~~~~~ 225 (359)
T 2fel_A 151 TGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKL----G-DNAGAVRADLAKRLGLADRP 225 (359)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCTTSSCTTT----G-GGHHHHHHHHHHHHTCBCCC
T ss_pred eccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHhccCccC----c-chHHHHHHHHHHHhCcCCCc
Confidence 999999999999999999999999999999999986 678899999997664 3 34678899999999999887
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHH
Q 009005 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLA-YFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397 (546)
Q Consensus 319 ~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s~G-~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~ 397 (546)
+ ++++||+++|++++++.++++|+|||+|+++|++.| ++.+ .+++|||||||||||+.+|++++++ +.+.+
T Consensus 226 -~-~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s~e~Ei~~---~~~~GSS~MP~K~NP~~~E~i~~~a---~~v~~ 297 (359)
T 2fel_A 226 -Q-WHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIGSEIRL---SGGGGSSAMPHKQNPVNAETLVTLA---RFNAV 297 (359)
T ss_dssp -C-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE---C------------CCHHHHHHHHHH---HHHHH
T ss_pred -h-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecC---CCCCCCccCCcccCCHHHHHHHHHH---HHHHH
Confidence 4 677899999999999999999999999999998765 5544 4569999999999999999999844 45666
Q ss_pred HHHhhc--chhhhcccCCcchhHH-hHHhhHHHHHHHHHHHHHhhhccccCHHHHHHH
Q 009005 398 FLSMKL--PISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVNEARLSDD 452 (546)
Q Consensus 398 ~~~~~l--~~~~~erDl~~s~~~~-~l~~~~~~~~~~l~~~~~~l~~L~Vn~erm~~n 452 (546)
.+...+ ...++|||+++|..+| .+++++..+..++..+..++++|+||+++|...
T Consensus 298 ~~~~~~~~~~~~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 298 QISALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp HHHHHHHTTCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred HHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 554332 1233589999998776 467888889999999999999999999999864
No 17
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=3.4e-68 Score=577.11 Aligned_cols=400 Identities=17% Similarity=0.122 Sum_probs=311.1
Q ss_pred ccCccCCCCccchHhhcc--------cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHH
Q 009005 86 PLDGRYWSKVKDLAPYMS--------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEV 157 (546)
Q Consensus 86 p~~~ry~~~~~~m~~ifs--------d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i 157 (546)
|.|.+|+..+......|+ +++++++|+.||+||++|++ ++|+||++.+++|.+.+..+..
T Consensus 18 p~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~--------- 85 (478)
T 1jsw_A 18 PADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANK---ELQTIPKSVANAIIAACDEVLN--------- 85 (478)
T ss_dssp ESSCCCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHST---------
T ss_pred CCccccchHHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHh---------
Confidence 555566655666666666 68899999999999999999 8999998888877543222220
Q ss_pred HHHHhhhCCch------------hhHH----HHHHHHhhcCchhhhhcC--ccc------cCCChhhHHHHHHHHHHHHH
Q 009005 158 KNIERVTNHDV------------KAVE----YFLKQKCQSQPEIAKVLE--FFH------FACTSEDINNLAHALMLKEA 213 (546)
Q Consensus 158 ~~~~~~~~hdv------------~a~e----~~L~e~~g~~~~~~~~~~--~vH------~G~TsnDi~dTa~~L~lr~a 213 (546)
+.+..++||+ ++++ +.+.+++|. +.++ ++| +|+|||||++|+++|++|++
T Consensus 86 -~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~-----~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~ 159 (478)
T 1jsw_A 86 -NGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGH-----QKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSS 159 (478)
T ss_dssp -TTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTS-----CCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHH
T ss_pred -cchhccCCccchhhccCcccccccHHHHHHHHHHHHcCc-----cccccccccccccccCCCChhhHHHHHHHHHHHHH
Confidence 2222233333 3344 466788874 2343 555 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCc
Q 009005 214 INKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNY 289 (546)
Q Consensus 214 l~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~ 289 (546)
+.. |.+.|.+|+++|.++|++|++++|+||||+||||||||||||++|+++|.|+++||.++. ..+++|| ||||.
T Consensus 160 l~~-l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~AvGT~ 238 (478)
T 1jsw_A 160 LIK-LVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTG 238 (478)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSC
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCC
Confidence 985 999999999999999999999999999999999999999999999999999999999985 5677777 78995
Q ss_pred cccccCCCCCChhhHHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcceec
Q 009005 290 NAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAYFKQ 361 (546)
Q Consensus 290 aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~---~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~-----s~G~~~~ 361 (546)
.... |+++ +.+.+++++.|||+.++..+ ++.+||+++|++++++.++++|+|||+|+++|+ ++|++.+
T Consensus 239 ~~~~---~~~~-~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~l 314 (478)
T 1jsw_A 239 LNTP---KEYS-PLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINL 314 (478)
T ss_dssp SSCT---TTHH-HHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEEC
T ss_pred ccCC---cchH-HHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEEC
Confidence 3321 2111 46788899999999643322 788999999999999999999999999999998 4899987
Q ss_pred ccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHH---hhcchhhhcccCCcchhHHhHHhhHHHHHHHHHHHH-H
Q 009005 362 VTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS---MKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-Q 437 (546)
Q Consensus 362 ~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~-~ 437 (546)
+ .+++||||||||+||+.+|+++++++ .+.|+.. ..+..+.|++++......+++++.+..+..++..+. +
T Consensus 315 p--~~~~GSSiMP~K~NP~~~E~i~~~a~---~v~g~~~~~~~~~~~~~~e~~~~~p~~~~~l~~s~~~l~~~l~~~~~~ 389 (478)
T 1jsw_A 315 P--ELQAGSSIMPAKVNPVVPEVVNQVCF---KVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEK 389 (478)
T ss_dssp C--CCSCCCSSCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCCCCCCCCcccCCHHHHHHHHHHH---HHHhHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 48999999999999999999999655 4555542 233344578887665456778888999999999887 6
Q ss_pred hhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCchhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCc
Q 009005 438 GIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTP 516 (546)
Q Consensus 438 ~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP 516 (546)
++++|+||++||+++++.+++++++.+. .+|++.|+++++++. .++.+++++..+. .+++++++++ |||
T Consensus 390 ~l~gl~vn~erm~~~l~~~~~l~t~La~----~lg~~~a~~~v~~a~----~~g~~l~e~~~~~~~l~~~~~~~~--ldp 459 (478)
T 1jsw_A 390 CINGITANKEVCEGYVYNSIGIVTYLNP----FIGHHNGDIVGKICA----ETGKSVREVVLERGLLTEAELDDI--FSV 459 (478)
T ss_dssp TGGGCEECHHHHHHHHTTCTTCGGGTHH----HHCHHHHHHHHHHHH----TTCCCHHHHHHHHTSSCSHHHHTS--CCC
T ss_pred HHccCeecHHHHHHHHHhCchHHHHHHH----hhhHHHHHHHHHHHH----HhCCCHHHHHHhcCCCCHHHHHHh--CCH
Confidence 9999999999999999999987766553 568777777777554 3577888876543 4778888874 999
Q ss_pred CcccCch
Q 009005 517 HNYVGAA 523 (546)
Q Consensus 517 ~~~~G~a 523 (546)
.+|+|+.
T Consensus 460 ~~~~~~~ 466 (478)
T 1jsw_A 460 QNLMHPA 466 (478)
T ss_dssp -------
T ss_pred HHHhCCC
Confidence 9999975
No 18
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=2.2e-66 Score=561.14 Aligned_cols=400 Identities=18% Similarity=0.124 Sum_probs=308.5
Q ss_pred ccchHhhcc------cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhcCCcccHHHHHHHHhh-hCCc
Q 009005 95 VKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERV-TNHD 167 (546)
Q Consensus 95 ~~~m~~ifs------d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~~~~~~d~~~i~~~~~~-~~hd 167 (546)
+.....-|. |++++++|++||+||++|++ ++|+||++.+++|.+.+..+..-. .+........+. .+.|
T Consensus 26 t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~-~~~~f~~~~~q~g~~~~ 101 (467)
T 1fur_A 26 TQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNE---DLGLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQ 101 (467)
T ss_dssp HHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTT-TGGGCCCBSSSCTTCHH
T ss_pred hHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcc-ccccccchhhhcccccc
Confidence 444444555 78899999999999999999 999999988888864333222100 010000011010 1223
Q ss_pred h-hhHHHHH----HHHhhcCchhhhhcCc--cc------cCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 009005 168 V-KAVEYFL----KQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAINKV-MFPVMDKLIKALCEIA 233 (546)
Q Consensus 168 v-~a~e~~L----~e~~g~~~~~~~~~~~--vH------~G~TsnDi~dTa~~L~lr~al~~~-l~~~L~~l~~~L~~lA 233 (546)
+ ++++..+ .+++|. +.|+| +| +|+|||||++|+++|++|+++. . |.+.|.+|+++|.++|
T Consensus 102 ~~mn~~~via~~a~e~~G~-----~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~-~~l~~~l~~L~~~L~~~A 175 (467)
T 1fur_A 102 SNMNMNEVLANRASELLGG-----VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALR-KQLIPQLKTLTQTLNEKS 175 (467)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----CSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhCc-----ccccccccCchhhcccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3 4444433 788874 24555 66 9999999999999999999998 4 9999999999999999
Q ss_pred HHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHH
Q 009005 234 KDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFV 309 (546)
Q Consensus 234 ~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la 309 (546)
++|++++|+||||+||||||||||||++|+++|.|+++||.++. ..+++|| |+||..... |++ .+.+.++++
T Consensus 176 ~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAvGT~~~~~---~~~-~~~v~~~la 251 (467)
T 1fur_A 176 RAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTH---PEY-ARRVADELA 251 (467)
T ss_dssp HHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC---TTH-HHHHHHHHH
T ss_pred HHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhcCCccCC---hhH-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 4566665 899932211 211 246788899
Q ss_pred HHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCCCCCCCCCCCCCChhh
Q 009005 310 KSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPID 381 (546)
Q Consensus 310 ~~LGl~~~~~~~---~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~ 381 (546)
+.|||+..++.+ ++.+||+++|++++++.++++|+|||+|+++|+| +|++++ +.+++|||||||||||+.
T Consensus 252 ~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~l--p~~~~GSSiMP~K~NP~~ 329 (467)
T 1fur_A 252 VITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI--PENEPGSSIMPGKVNPTQ 329 (467)
T ss_dssp HHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEEC--CCCSCCCTTCTTCCCCHH
T ss_pred HHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEEC--CCCCCCCCCCCcccCCHH
Confidence 999999754432 5789999999999999999999999999999984 788876 457899999999999999
Q ss_pred HhhhhhchhhhhhHHHHHHhhc---chhhhcccCCcchhHHhHHhhHHHHHHHHHHH-HHhhhccccCHHHHHHHHhhhh
Q 009005 382 FENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVNEARLSDDLNHAW 457 (546)
Q Consensus 382 ~E~~~g~~~la~~~~~~~~~~l---~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~-~~~l~~L~Vn~erm~~nl~~~~ 457 (546)
+|.+++.+ ..+.|+....+ ....+|+|...+.+.+.+++.+..+..++..+ .+++++|+||++||+++++.++
T Consensus 330 ~E~i~~~a---~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~ 406 (467)
T 1fur_A 330 CEALTMLC---CQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESL 406 (467)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHHHhCc
Confidence 99999844 46777654332 22345788877777788888888888888888 5699999999999999999999
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCcccCch
Q 009005 458 EVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 458 ~i~aE~~~~~l~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~G~a 523 (546)
+++++.+ +.+|++.|+++++++. .++.++++++.+.. +++++++++ |||..|+|+.
T Consensus 407 ~l~t~La----~~lg~~~a~~~~~~a~----~~g~~l~e~~~~~~~l~~~e~~~~--ldp~~~~~~~ 463 (467)
T 1fur_A 407 MLVTALN----THIGYDKAAEIAKKAH----KEGLTLKAAALALGYLSEAEFDSW--VRPEQMVGSM 463 (467)
T ss_dssp TTHHHHH----TTSCHHHHHHHHHHHH----HHTCCHHHHHHHTTSSCHHHHHHH--CCGGGC----
T ss_pred cHHHHhH----hhccHHHHHHHHHHHH----HcCCCHHHHHHhcCCCCHHHHHHh--cCHHHHhCcc
Confidence 8764322 4678888888877644 35789999886654 789888885 9999999865
No 19
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=3.8e-66 Score=559.47 Aligned_cols=390 Identities=19% Similarity=0.180 Sum_probs=300.2
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH-HHhcCCcc--cHHHH----HHHHhhhCCchhhHHHHHH
Q 009005 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMD--DALEV----KNIERVTNHDVKAVEYFLK 176 (546)
Q Consensus 104 d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~-~~~~~~~~--d~~~i----~~~~~~~~hdv~a~e~~L~ 176 (546)
|++++++|+++|+||++|++ ++|+||++.+++|.+.+. +.+..... +++.. ........|+|+++. ..
T Consensus 42 ~~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~--a~ 116 (466)
T 1vdk_A 42 PLEIIRAYGMLKKAAARANL---ELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANR--AS 116 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHH--HH
T ss_pred cHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccCCCchhhhccccccccccHHHHHHHH--HH
Confidence 67899999999999999999 999999988888864332 22211100 11000 000111134555544 27
Q ss_pred HHhhcCchhhhhc-Cccc------cCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccccccccccccc
Q 009005 177 QKCQSQPEIAKVL-EFFH------FACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (546)
Q Consensus 177 e~~g~~~~~~~~~-~~vH------~G~TsnDi~dTa~~L~lr~al~-~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q 248 (546)
+++|. +.| ++|| +|+|||||++|+++|++|+++. . |.+.|.+|+++|.++|++|++|+|+||||+|
T Consensus 117 e~~g~-----~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~-l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ 190 (466)
T 1vdk_A 117 EILGK-----PLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQR-LYPAVEGLIRTFTAKAQAFDQIVKVGRTHLM 190 (466)
T ss_dssp HHTTC-----CTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHTTTCEEEEEETTE
T ss_pred HHhCc-----cccccccccccCcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeeccccCc
Confidence 88874 244 6677 9999999999999999999997 6 9999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCccccccCCCCCChhhHHHHHHHHcCCCCCCCC---c
Q 009005 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV---T 321 (546)
Q Consensus 249 ~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~---~ 321 (546)
|||||||||||++|+++|.|+++||.++. ..+++|| |+||..... |++ .+++.+++++.|||+.++.. .
T Consensus 191 ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~---~~~-~~~v~~~la~~LG~~~~~~~n~~~ 266 (466)
T 1vdk_A 191 DAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAH---PRF-GELVAKYLAEETGLPFRVAENRFA 266 (466)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSC---TTH-HHHHHHHHHHHHSSCCEECSCTTH
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCccCC---chH-HHHHHHHHHHHcCCCCCCCcchHH
Confidence 99999999999999999999999999985 4566666 799943221 211 24678899999999964322 2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHH
Q 009005 322 QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (546)
Q Consensus 322 ~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~ 396 (546)
++.+||+++|++++++.++++|+|||+|+++|+| +|+++++ .+++|||||||||||+.+|.+++.+. .+.
T Consensus 267 a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp--~~~~GSSiMP~K~NP~~~E~i~~~a~---~v~ 341 (466)
T 1vdk_A 267 ALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIP--ANEPGSSIMPGKVNPTQVEALTMVVV---RVY 341 (466)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECC--CCSCCSSCCTTCCCCHHHHHHHHHHH---HHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEECC--CCCCcCCCCCCCCCcHHHHHHHHHHH---HHH
Confidence 7789999999999999999999999999999984 7888764 47899999999999999999998544 666
Q ss_pred HHHHhh---cchhhhcccCCcchhHHhHHhhHHHHHHHHHHH-HHhhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcC
Q 009005 397 SFLSMK---LPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYG 472 (546)
Q Consensus 397 ~~~~~~---l~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~-~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G 472 (546)
|+.... ...+.++++...+.+..++++.+..+..++..+ ..++++|+||++||+++++.+++++++.+ +.+|
T Consensus 342 g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La----~~lg 417 (466)
T 1vdk_A 342 GNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALN----KAIG 417 (466)
T ss_dssp HHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGGGHHHH----HHHC
T ss_pred hHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHHHHhcchHHHHHH----Hhcc
Confidence 665332 223345666555555567778888888888888 56999999999999999999998875544 3457
Q ss_pred chhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCcccCch
Q 009005 473 VPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 473 ~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~G~a 523 (546)
++.++++++ .+..++.+++++..+.. +++++++++ |||..|+|+.
T Consensus 418 ~~~a~~~v~----~a~~~g~~l~e~~~~~~~l~~~~~~~~--ldp~~~~~~~ 463 (466)
T 1vdk_A 418 YDKAAEIVK----KALKEKKTLKQAALELGYLTEEEFDRI--VVPMRLAKPH 463 (466)
T ss_dssp SHHHHTTTT----TSCC--CCHHHHHHHTSSSCHHHHHHH--CCHHHHHCCC
T ss_pred HHHHHHHHH----HHHHcCCCHHHHHHhcCCCCHHHHHHH--cCHHHhcCCC
Confidence 655555544 55567889999876544 788888875 9999999864
No 20
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=1.6e-65 Score=555.58 Aligned_cols=386 Identities=19% Similarity=0.192 Sum_probs=294.3
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH-HHhcCCcc--cHHHHHHH-----HhhhCCchhhHHHHH
Q 009005 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMD--DALEVKNI-----ERVTNHDVKAVEYFL 175 (546)
Q Consensus 104 d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~-~~~~~~~~--d~~~i~~~-----~~~~~hdv~a~e~~L 175 (546)
++.++++|+.||+||+++++ ++|+||++.+++|.+.+. +.+..... +.+. .+. .....|+|++.. .
T Consensus 67 ~~~~i~a~~~v~~A~A~a~~---~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~-~q~g~~t~~nmn~~evia~~--a 140 (488)
T 1yfm_A 67 PLPLVHAFGVLKKSAAIVNE---SLGGLDPKISKAIQQAADEVASGKLDDHFPLVV-FQTGSGTQSNMNANEVISNR--A 140 (488)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBS-SSCTTCHHHHHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccCCCcch-hhccccccccccHHHHHHHH--H
Confidence 56799999999999999999 999999988888864332 22211100 0000 000 011124444433 2
Q ss_pred HHHhhcCchhhhhc-Cccc------cCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccccccccccc
Q 009005 176 KQKCQSQPEIAKVL-EFFH------FACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (546)
Q Consensus 176 ~e~~g~~~~~~~~~-~~vH------~G~TsnDi~dTa~~L~lr~al~-~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~ 247 (546)
.+.+|. +.| ++|| +|+||||+++|+++|++|+++. . |.+.|.+|+++|.++|++|++++|+||||+
T Consensus 141 ~e~lG~-----~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~~-l~~~L~~L~~~L~~~A~e~~~~v~~GrTHl 214 (488)
T 1yfm_A 141 IEILGG-----KIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNE-LIPELTNLKNALEAKSKEFDHIVKIGRTHL 214 (488)
T ss_dssp HHC--------------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred HHHhCc-----cccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcEeeceecC
Confidence 577763 233 5666 9999999999999999999997 7 999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccC-ccccccCCCCCChhhHHHHHHHHcCCCCCCCC--
Q 009005 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-- 320 (546)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT-~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~-- 320 (546)
|||+||||||||++|+++|.|+++||.++. ..+++|| |||| ++.. |++ ...+.+++++.|||+..+..
T Consensus 215 Q~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~----~~~-~~~v~~~la~~lGl~~~~~~n~ 289 (488)
T 1yfm_A 215 QDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTK----PGF-DVKIAEQISKETGLKFQTAPNR 289 (488)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTH-HHHHHHHHHHHHSSCCEECSCH
T ss_pred ccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCC----hhH-HHHHHHHHHHHhCCCCccCccH
Confidence 999999999999999999999999999985 4555666 8999 3322 211 24678889999999974333
Q ss_pred -ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhh
Q 009005 321 -TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANE 394 (546)
Q Consensus 321 -~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~ 394 (546)
.++.+||+++|++++++.++++|+|||+|+++|+| +|++.+ +.+++||||||||+||+.+|.+++.+ ..
T Consensus 290 ~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~l--p~~~~GSSiMP~K~NPv~~E~i~~~a---~~ 364 (488)
T 1yfm_A 290 FEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELML--PENEPGSSIMPGKVNPTQNEALTQVC---VQ 364 (488)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEEC--CCCSCCCTTSTTCCCCHHHHHHHHHH---HH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEEC--CCCCCcCCCcccccCcHHHHHHHHHH---HH
Confidence 27789999999999999999999999999999984 777776 45789999999999999999999844 46
Q ss_pred HHHHHHhhc---chhhhcccCCcchhHHhHHhhHHHHHHHHHHH-HHhhhccccCHHHHHHHHhhhhhHHHHHHHHHH-H
Q 009005 395 DLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM-R 469 (546)
Q Consensus 395 ~~~~~~~~l---~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~-~~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~ 469 (546)
+.|+....+ ..+.|+++...+.+.+++++.+..+..++..+ .+++++|+||++||+++++.+++++ +.| +
T Consensus 365 v~G~~~~i~~a~~~g~~eln~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~-----t~La~ 439 (488)
T 1yfm_A 365 VMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLV-----TALNP 439 (488)
T ss_dssp HHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGG-----TTTGG
T ss_pred HHhHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHccCchHH-----HHHHH
Confidence 777653322 22335665444555556777888888888888 5699999999999999999999876 334 5
Q ss_pred hcCchhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCcccCc
Q 009005 470 RYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHNYVGA 522 (546)
Q Consensus 470 ~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~G~ 522 (546)
.+|++.|+++++++. .++.+++++..+.. +++++++++ |||..|+|+
T Consensus 440 ~lg~~~a~~i~~~a~----~~g~~l~e~~~~~~~l~~eel~~~--ldp~~~~~~ 487 (488)
T 1yfm_A 440 KIGYDAASKVAKNAH----KKGITLKESALELGVLTEKEFDEW--VVPEHMLGP 487 (488)
T ss_dssp GTCHHHHHHHHHHHH----HHTCCHHHHHHHTTSCCHHHHHHH--CCGGGCC--
T ss_pred hccHHHHHHHHHHHH----HhCCCHHHHHHhcCCCCHHHHHHh--cCHHHhcCC
Confidence 679888888877654 35789999876554 788888885 999999985
No 21
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=7e-65 Score=548.50 Aligned_cols=403 Identities=18% Similarity=0.187 Sum_probs=306.7
Q ss_pred ccCccCccCCCCccchHhh--c--c----cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-h-----c
Q 009005 83 ALSPLDGRYWSKVKDLAPY--M--S----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-D-----G 148 (546)
Q Consensus 83 ~~sp~~~ry~~~~~~m~~i--f--s----d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~-----~ 148 (546)
.+..-...|++ ...+|++ | | +++++++|+.||+|++++++ ++|+||++.+++|.+.+..+ . .
T Consensus 14 ~~~vp~~~~yg-~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~---~~Gil~~~~a~aI~~a~~~i~~~~~~~~ 89 (468)
T 3r6q_A 14 EKEIPKDAYYG-VQTIRATENFPITGYRIHPELIKSLGIVKKSAALANM---EVGLLDKEVGQYIVKAADEVIEGKWNDQ 89 (468)
T ss_dssp EEEECTTCCCC-HHHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHTTTTGGG
T ss_pred CccCCcccccC-HHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHhCccccC
Confidence 33333344443 4567777 8 4 67999999999999999999 99999998888886433322 2 1
Q ss_pred CCcccHHHHHHHHhhhCCch-hhHH----HHHHHHhhcCchhhhhcCc--cc------cCCChhhHHHHHHHHHHHHHHH
Q 009005 149 FNMDDALEVKNIERVTNHDV-KAVE----YFLKQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAIN 215 (546)
Q Consensus 149 ~~~~d~~~i~~~~~~~~hdv-~a~e----~~L~e~~g~~~~~~~~~~~--vH------~G~TsnDi~dTa~~L~lr~al~ 215 (546)
|+. | .+.. ..+.++ ++++ +.+.+++|. +.|+| || +|+||||+++|+++|++|+++.
T Consensus 90 f~~-~--~~~~---g~gt~~nmnvnevia~~~~e~~G~-----~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~ 158 (468)
T 3r6q_A 90 FIV-D--PIQG---GAGTSINMNANEVIANRALELMGE-----EKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN 158 (468)
T ss_dssp CCS-C--SSCS---STTHHHHHHHHHHHHHHHHHHTTC-----CTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCc-c--HHhc---cccccccccHHHHHHHHHHHHhcc-----ccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHH
Confidence 221 1 0100 112233 3333 456677875 24554 66 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccCc-c
Q 009005 216 KVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGNY-N 290 (546)
Q Consensus 216 ~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT~-a 290 (546)
. |.+.|.+|+++|.++|++|++++|+||||+|||+||||||||++|+++|.|+++||.++. ..+++|| |+||. +
T Consensus 159 ~-l~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~ 237 (468)
T 3r6q_A 159 Q-LIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLN 237 (468)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTT
T ss_pred H-HHHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeecCCCCC
Confidence 5 999999999999999999999999999999999999999999999999999999999985 5566766 89993 2
Q ss_pred ccccCCCCCChhhHHHHHHHHcCCCCCC----CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceec
Q 009005 291 AHLSAYPDVNWPQITEDFVKSLGLSFNP----YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQ 361 (546)
Q Consensus 291 a~~~~~p~~d~~~v~~~la~~LGl~~~~----~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~ 361 (546)
+. |++ ...+.+++++.|||+..+ ++ ++.+||+++|++++++.++++|+|||+|+++|+| +|++.+
T Consensus 238 ~~----~~~-~~~v~~~la~~lGl~~~~~~n~~~-a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~l 311 (468)
T 3r6q_A 238 AD----PEY-ISIVTEHLAKFSGHPLRSAQHLVD-ATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVL 311 (468)
T ss_dssp CC----HHH-HHHHHHHHHHHHCSCCEECSCHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEEC
T ss_pred CC----hHH-HHHHHHHHHHHhCCCCccccchHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEEC
Confidence 21 111 235677889999999743 33 6789999999999999999999999999999985 777775
Q ss_pred ccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhc---chhhhcccCCcchhHHhHHhhHHHHHHHHHHHH-H
Q 009005 362 VTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL-Q 437 (546)
Q Consensus 362 ~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l---~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~~-~ 437 (546)
+++++|||||||||||+.+|.+++.+ ..+.|+....+ ..+.+++..-..-+..++++.+..+..++..+. .
T Consensus 312 --p~~~~GSSiMP~K~NP~~~E~i~~~a---~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~ 386 (468)
T 3r6q_A 312 --PARQPGSSIMPGKVNPVMPEVMNQVA---FQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTEN 386 (468)
T ss_dssp --CCCSCCCTTSTTCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCCCCCCCCCCcHHHHHHHHHH---HHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999844 46777643321 112233221111123356677888888888888 9
Q ss_pred hhhccccCHHHHHHHHhhhhhHHHHHHHHHHHhcCchhHHHHHHHHhhccccccccHHHHHhhC-CCCHHHHHhccccCc
Q 009005 438 GIAKLQVNEARLSDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREFIIGL-ELPEEAKANLLNLTP 516 (546)
Q Consensus 438 ~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~-~l~~~~~~~l~~ldP 516 (546)
++++|+||++||++|++.++++++++. +.+|++.|+++++++. .++.++++++.+. .+++++++++ |||
T Consensus 387 ~i~gl~vn~erm~~~l~~s~~l~t~La----~~lgy~~a~~ia~~a~----~~g~~l~e~~~~~~~ls~eel~~~--ldp 456 (468)
T 3r6q_A 387 CLKGIKANEERMKEYVEKSIGIITAIN----PHVGYETAAKLAREAY----LTGESIRELCIKYGVLTEEQLNEI--LNP 456 (468)
T ss_dssp TGGGCEECHHHHHHHHHTCSTTHHHHH----HHHHHHHHHHHHHHHH----HTCCCSHHHHHHHTSSCHHHHHHH--SCH
T ss_pred HHccCEECHHHHHHHHHcCCchHHhcc----hhhHHHHHHHHHHHHH----HhCCCHHHHHHHcCCCCHHHHHHH--cCH
Confidence 999999999999999999998774432 5667777777766554 4688999887543 5899999885 999
Q ss_pred CcccCc
Q 009005 517 HNYVGA 522 (546)
Q Consensus 517 ~~~~G~ 522 (546)
..|+++
T Consensus 457 ~~~~~~ 462 (468)
T 3r6q_A 457 YEMIHP 462 (468)
T ss_dssp HHHTSC
T ss_pred HHhcCC
Confidence 999987
No 22
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=6.9e-64 Score=542.79 Aligned_cols=417 Identities=18% Similarity=0.129 Sum_probs=301.0
Q ss_pred cccccCccCccCCCC-ccchHhhcc------cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-hcCCc
Q 009005 80 SLTALSPLDGRYWSK-VKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-DGFNM 151 (546)
Q Consensus 80 ~~~~~sp~~~ry~~~-~~~m~~ifs------d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~~~~~ 151 (546)
.|-.+..-...|++. +.....-|. ++.++++++.||+|++++++ ++|+||++.+++|.+.+..+ +....
T Consensus 38 ~~g~~~vp~~~~~G~~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~---~~Gil~~~~a~aI~~a~~ei~~~~~~ 114 (495)
T 4adm_A 38 TMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNS---DLGLLAPEKADAIIAAAAEIADGQHD 114 (495)
T ss_dssp TTEEEEEETTCSCCHHHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTSCG
T ss_pred cCCCccCChhhhcCchhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHhCccc
Confidence 344444444556542 222333332 46899999999999999999 99999999888886444332 21110
Q ss_pred ccHHHHHHHHhhhCCch-hhHHHHHHHHh--hcCchhhhhcCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009005 152 DDALEVKNIERVTNHDV-KAVEYFLKQKC--QSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKA 228 (546)
Q Consensus 152 ~d~~~i~~~~~~~~hdv-~a~e~~L~e~~--g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~~ 228 (546)
..+ .+.......+.++ ++++..+.++. |. +--..+.+||+|+||||+++|+++|++|+++...|.+.|.+|+++
T Consensus 115 ~~f-~~~~~q~g~gt~~nmnvnevia~ra~lGG--~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~ 191 (495)
T 4adm_A 115 DQF-PIDVFQTGSGTSSNMNTNEVIASIAAKGG--VTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDA 191 (495)
T ss_dssp GGC-CCBSSSCTTCHHHHHHHHHHHHHHHHHTT--CCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCC-CcchhhccccccccccHHHHHHHHHHhCC--CccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000111123355 77888887743 41 001134556669999999999999999999842399999999999
Q ss_pred HHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccC-ccccccCCCCCChhh
Q 009005 229 LCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQ 303 (546)
Q Consensus 229 L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT-~aa~~~~~p~~d~~~ 303 (546)
|.++|++|++++|+||||+||||||||||||++|+++|.|+++||.++. ..+++|| |||| ++++ |++ ...
T Consensus 192 L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAvGT~~~~~----~~~-~~~ 266 (495)
T 4adm_A 192 LAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAP----DDF-GVR 266 (495)
T ss_dssp HHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTH-HHH
T ss_pred HHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeecCCccCC----hhH-HHH
Confidence 9999999999999999999999999999999999999999999999885 4566666 8999 3332 322 235
Q ss_pred HHHHHHHHcCC-CC----CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCCCCCCCCC
Q 009005 304 ITEDFVKSLGL-SF----NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTM 373 (546)
Q Consensus 304 v~~~la~~LGl-~~----~~~~~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~~~GSS~M 373 (546)
+.+++++.||| +. |+++ |+.+||+++|++++++.++++|+|||+||++|+| +|++.+ +++++|||||
T Consensus 267 v~~~la~~lG~~~~~~~~n~~~-a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~l--p~~q~GSSiM 343 (495)
T 4adm_A 267 VVAVLVAQTGLSELRTAANSFE-AQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQL--PDLQPGSSIM 343 (495)
T ss_dssp HHHHHHHHHCCTTCEECSCTTH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEEC--CCC-------
T ss_pred HHHHHHHHhCCCCCccccchHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEC--CCCCCCCCCC
Confidence 67889999999 54 3344 7889999999999999999999999999999976 888875 4689999999
Q ss_pred CCCCChhhHhhhhhchhhhhhHHHHHHhhc---chhhhcccCCcchhHHhHHhhHHHHHHHHHHH-HHhhhccccCHHHH
Q 009005 374 PHKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA-LQGIAKLQVNEARL 449 (546)
Q Consensus 374 PhKrNPv~~E~~~g~~~la~~~~~~~~~~l---~~~~~erDl~~s~~~~~l~~~~~~~~~~l~~~-~~~l~~L~Vn~erm 449 (546)
||||||+.+|.+++.+ ..+.|+....+ ..+.|+...-..-+.+++++.+.....++..+ ..++++|+||++||
T Consensus 344 P~K~NPv~~E~i~~~a---~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm 420 (495)
T 4adm_A 344 PGKVNPVLPEAVTQVA---AQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHL 420 (495)
T ss_dssp --CCCCHHHHHHHHHH---HHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHH
T ss_pred CCCCCcHHHHHHHHHH---HHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHH
Confidence 9999999999999844 46777643321 11223322111113445666777777777777 79999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcCchhHHHHHHHHhhccccccccHHHHHhhCC-----CCHHHHHhccccCcCcccCch
Q 009005 450 SDDLNHAWEVLAEPIQTVMRRYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-----LPEEAKANLLNLTPHNYVGAA 523 (546)
Q Consensus 450 ~~nl~~~~~i~aE~~~~~l~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-----l~~~~~~~l~~ldP~~~~G~a 523 (546)
++|++.+++++++.. +.+|++.|+++++++.. ++.++++++.+.. +++++++++ |||..|+|++
T Consensus 421 ~~~l~~s~~l~t~La----~~igy~~a~~ia~~a~~----~g~~l~e~~~~~~~~~~~ls~eel~~~--ldp~~~~~~~ 489 (495)
T 4adm_A 421 RRLAESSPSIVTPLN----SAIGYEEAAAVAKQALK----ERKTIRQTVIDRGLIGDRLSIEDLDRR--LDVLAMAKAE 489 (495)
T ss_dssp HHHHHHCGGGGGGGH----HHHCHHHHHHHHHHHHH----HTCCHHHHHHHTTCCBTTBCHHHHHHH--TCHHHHTTCC
T ss_pred HHHHhccccHHHHhh----hhhhHHHHHHHHHHHHH----hCCCHHHHHHhCcccccCCCHHHHHHH--cCHHHhcCCc
Confidence 999999988764322 57799999998877654 6789999876542 789999885 9999999986
No 23
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.6e-63 Score=540.78 Aligned_cols=422 Identities=17% Similarity=0.167 Sum_probs=311.5
Q ss_pred ccccccccCccCccCCCC-ccchHhhc------ccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-h-
Q 009005 77 ELSSLTALSPLDGRYWSK-VKDLAPYM------SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-D- 147 (546)
Q Consensus 77 ~~~~~~~~sp~~~ry~~~-~~~m~~if------sd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~- 147 (546)
+...|-.+..-..+|++- |..=..-| -...+++++..|+.|.|++.+ ++|+||++.+++|.+.|..+ +
T Consensus 39 e~d~~g~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~---~lG~l~~~~a~aI~~A~~ei~~g 115 (495)
T 4hgv_A 39 ETDTFGPIEVASDRYWGAQAQRSLGNFKIGWEKQPLAIVRALGIVKQAAARANM---ALGRLDPAIGDAIVKAAQEVIDG 115 (495)
T ss_dssp EEETTEEEEEETTCCCCHHHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHTT
T ss_pred eecCCCCccCCCccchHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHcC
Confidence 444555555566677651 11111122 234699999999999999999 99999999999987654432 2
Q ss_pred ----cCCcccHHHHHHHHhh--hCCch-hhHHHHHHHHhhcCch---hhhhcCccccCCChhhHHHHHHHHHHHHHHHHH
Q 009005 148 ----GFNMDDALEVKNIERV--TNHDV-KAVEYFLKQKCQSQPE---IAKVLEFFHFACTSEDINNLAHALMLKEAINKV 217 (546)
Q Consensus 148 ----~~~~~d~~~i~~~~~~--~~hdv-~a~e~~L~e~~g~~~~---~~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~ 217 (546)
.|.. |. .+.... ++-.+ ..+.+...+.+|...+ .....+|||+|+||||+++||++|++++++...
T Consensus 116 ~~~~~F~~-d~---~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~ 191 (495)
T 4hgv_A 116 KLDEHFPL-VV---WQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHD 191 (495)
T ss_dssp SSGGGCCC-BS---SSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhccch-hh---hhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHH
Confidence 1111 11 111011 11112 2233444556653110 013467999999999999999999999887434
Q ss_pred HHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---h-cccccccccCccccc
Q 009005 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---I-MGKFAGAVGNYNAHL 293 (546)
Q Consensus 218 l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~-~g~~gGAvGT~aa~~ 293 (546)
|.+.|..|+++|.++|++|++++|+||||+|||+|||||+||++|+++|.|+++||.++. . +..+|+|+||....
T Consensus 192 L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~~~- 270 (495)
T 4hgv_A 192 LLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLNA- 270 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhcccC-
Confidence 999999999999999999999999999999999999999999999999999999999874 2 33334688983221
Q ss_pred cCCCCCChhhHHHHHHHHcCCCCCCCC---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcceecccCCCC
Q 009005 294 SAYPDVNWPQITEDFVKSLGLSFNPYV---TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGE 367 (546)
Q Consensus 294 ~~~p~~d~~~v~~~la~~LGl~~~~~~---~~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s---~G~~~~~~~~~~ 367 (546)
.|++ +..+.+++++.+||.+.+.. .|+.+||++++++++++.++++|+|||+|||+|+| .|+.++.+++++
T Consensus 271 --~~~~-~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~p~~q 347 (495)
T 4hgv_A 271 --PVGF-AEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPENE 347 (495)
T ss_dssp --CTTH-HHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCS
T ss_pred --chhH-HHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEecCcCC
Confidence 1222 23567888999999864322 27788999999999999999999999999999986 677777788999
Q ss_pred CCCCCCCCCCChhhHhhhhhchhhhhhHHHHHH---hhcchhhhcccCCcchhHHhHHhhHHHHHH-HHHHHHHhhhccc
Q 009005 368 IGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS---MKLPISRWQRDLTDSTVLRNMGGGLGHSLL-AYKSALQGIAKLQ 443 (546)
Q Consensus 368 ~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~---~~l~~~~~erDl~~s~~~~~l~~~~~~~~~-~l~~~~~~l~~L~ 443 (546)
+||||||||+||+.+|.++++++ .+.+... .....+++|||..++.+.|.++..+..... ++..+..|+++|+
T Consensus 348 ~GSSiMP~K~NPv~~E~i~~~a~---~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~ 424 (495)
T 4hgv_A 348 PGSSIMPGKVNPTQCEALTQVCV---QVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIE 424 (495)
T ss_dssp CCC-----CCCCHHHHHHHHHHH---HHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCE
T ss_pred cccccCccccChHHHHHHHHHHH---HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCE
Confidence 99999999999999999998654 4555532 222344568999999888876655544433 4445678999999
Q ss_pred cCHHHHHHHHhhhhhHHHHHHHHHH-HhcCchhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCcccC
Q 009005 444 VNEARLSDDLNHAWEVLAEPIQTVM-RRYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHNYVG 521 (546)
Q Consensus 444 Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~G 521 (546)
||++||+++++.++.++ +.| +++|++.||++++++.+ ++.+++|.+.+.. +++++++++ |||++|+|
T Consensus 425 vn~erm~~~l~~s~~lv-----taL~~~iGy~~A~~iak~A~~----~g~~lre~~~~~~~ls~eeld~l--ldP~~~~g 493 (495)
T 4hgv_A 425 AREDNIKAALDRSLMLV-----TALAPKIGYDNAAKIAKTAHK----NGTTLREEAVGGGYVTDEEFDAV--VRPETMIG 493 (495)
T ss_dssp ECHHHHHHHHHHCSGGG-----GGTHHHHCHHHHHHHHHHHHH----HTCCHHHHHHTTTSSCHHHHHHH--CCGGGSSS
T ss_pred ECHHHHHHHHhcChhHH-----HHhhHHHHHHHHHHHHHHHHH----hCCCHHHHHHHcCCCCHHHHHHh--CCHHHhcC
Confidence 99999999999998766 345 78899999999998765 5789999886654 899999985 99999999
Q ss_pred ch
Q 009005 522 AA 523 (546)
Q Consensus 522 ~a 523 (546)
+|
T Consensus 494 pA 495 (495)
T 4hgv_A 494 PA 495 (495)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 24
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=2.6e-63 Score=536.32 Aligned_cols=403 Identities=18% Similarity=0.153 Sum_probs=298.7
Q ss_pred cccccccCccCccCCCCccchHhh--c--cc------chhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHh
Q 009005 78 LSSLTALSPLDGRYWSKVKDLAPY--M--SE------YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID 147 (546)
Q Consensus 78 ~~~~~~~sp~~~ry~~~~~~m~~i--f--sd------~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~~ 147 (546)
...|-.+..-...|++ ...+|++ | |. .+++++++.||+|++++++ ++|+||++.+++|.+.+..+.
T Consensus 27 ~d~~g~~~vp~~~~yG-~qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~---~~G~l~~~~a~aI~~a~~ei~ 102 (478)
T 3ocf_A 27 QDSLGERDIPMDAYFG-IQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANY---KLRQLPEPKYAAIVAACDDII 102 (478)
T ss_dssp EETTEEEEECTTCSSC-HHHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHH
T ss_pred cccCCCccCCcccccC-HHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHH
Confidence 3334444443444554 4567777 7 43 5899999999999999999 999999998888864443222
Q ss_pred c------CCcccHHHHHHHHhhhCCch-hhH----HHHHHHHhhcCchhhhhcCc--cc------cCCChhhHHHHHHHH
Q 009005 148 G------FNMDDALEVKNIERVTNHDV-KAV----EYFLKQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHAL 208 (546)
Q Consensus 148 ~------~~~~d~~~i~~~~~~~~hdv-~a~----e~~L~e~~g~~~~~~~~~~~--vH------~G~TsnDi~dTa~~L 208 (546)
. |+. |. +.. ..+.++ +++ .+.+.+.+|. +.|+| || +|+||||+++|+++|
T Consensus 103 ~g~~~~~f~~-~~--~q~---g~gt~~nmnvnevia~~a~e~~G~-----~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L 171 (478)
T 3ocf_A 103 DGLLMEQFVV-DV--FQG---GAGTSSNMNANEVIANRALEHLGR-----PRGDYQTIHPNDDVNMSQSTNDVYPTAVRL 171 (478)
T ss_dssp TTTTGGGCCC-BT--TCS---STTHHHHHHHHHHHHHHHHHHTTC-----CTTCTTTSCCCCCCTTTCCHHHHHHHHHHH
T ss_pred cCccccCCCc-ch--hhc---cCCccccchHHHHHHHHHHHHhch-----hcCCCCccCCCCCCCCCCChhhHHHHHHHH
Confidence 1 211 10 000 111222 333 3455677775 35666 77 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-
Q 009005 209 MLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG- 284 (546)
Q Consensus 209 ~lr~al~~~l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG- 284 (546)
++|+++.. |.+.|..|+++|.++|++|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++||
T Consensus 172 ~~~~~l~~-L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgt 250 (478)
T 3ocf_A 172 ALLLSQNQ-VQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGT 250 (478)
T ss_dssp HHHHTHHH-HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC-
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCe
Confidence 99999995 999999999999999999999999999999999999999999999999999999999885 4556665
Q ss_pred cccC-ccccccCCCCCChhhHHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 009005 285 AVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS----- 355 (546)
Q Consensus 285 AvGT-~aa~~~~~p~~d~~~v~~~la~~LGl~~~~~~~---~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s----- 355 (546)
|||| ++++ |++ ...+.+++++.|||+..+..+ ++++||+++|++++++.++++|+|||+||++|+|
T Consensus 251 AvGTg~~~~----~~~-~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g 325 (478)
T 3ocf_A 251 AIGTRINAS----HAY-AEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSG 325 (478)
T ss_dssp --------------CH-HHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSS
T ss_pred eeCCCcCCC----hhH-HHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 8999 4432 221 245778999999999744332 5678999999999999999999999999999985
Q ss_pred hcceecccCCCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhhcchhhhcccCCcch----hHHhHHhhHHHHHHH
Q 009005 356 LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDST----VLRNMGGGLGHSLLA 431 (546)
Q Consensus 356 ~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~l~~~~~erDl~~s~----~~~~l~~~~~~~~~~ 431 (546)
+|++.+ |++++||||||||+||+.+|.+++.+ ..+.|+....+... ..++++.+. +..++++.+.....+
T Consensus 326 ~gEi~l--p~~q~GSSiMP~K~NPv~~E~i~~~a---~~V~G~~~~i~~a~-~~g~leln~~~p~i~~~l~~s~~ll~~~ 399 (478)
T 3ocf_A 326 LGEIRL--PAVQPGSSIMPGKVNPVIPESVNQVC---YQVIGNDLTVTMAA-ESGQLQLNAFEPLIVYNILSSMRLLGRA 399 (478)
T ss_dssp CCCEEC--CCCSCCBTTBTTCCCCHHHHHHHHHH---HHHHHHHHHHHHHH-HTCBTTBCTTHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEC--CCCCCcCCCCCcccCcHHHHHHHHHH---HHHHhHHHHHHHHH-hcCcchhcccchhHHHHHHHHHHHHHHH
Confidence 677765 46899999999999999999999844 46777643321111 123333222 233455566666666
Q ss_pred HHHHH-HhhhccccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCchhHHHHHHHHhhccccccccHHHHHhhCCCCHHHHH
Q 009005 432 YKSAL-QGIAKLQVNEARLSDDLNHAWEVLAEPIQTVM-RRYGVPEPYEKLKELTRGKVVTKESIREFIIGLELPEEAKA 509 (546)
Q Consensus 432 l~~~~-~~l~~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~l~~~~~~ 509 (546)
+..+. .|+++|+||++||+++++.++++.+ .| +.+|++.|+++++++. .++.++++++.+..+++++++
T Consensus 400 ~~~~~~~~v~gl~vn~erm~~~l~~s~~lvt-----aLa~~igy~~a~~ia~~A~----~~g~~l~e~~~~~~~s~eel~ 470 (478)
T 3ocf_A 400 MTNLAERCVDGIEANVERCRAGAEESISLAT-----ALVPVVGYARAAEIAKQAL----ASGQTVMEVAISKGLDASALT 470 (478)
T ss_dssp HHHHHHHTGGGCEECHHHHHHHHHTCGGGGG-----GGHHHHHHHHHHHHHHHHH----HHCCCHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHhhCCCEECHHHHHHHHHhCccHHH-----HhhHHHHHHHHHHHHHHHH----HhCCCHHHHHHHcCCCHHHHH
Confidence 66564 5799999999999999999998764 34 5678888887777655 468899999876666888888
Q ss_pred hccccCcCc
Q 009005 510 NLLNLTPHN 518 (546)
Q Consensus 510 ~l~~ldP~~ 518 (546)
++ |||.+
T Consensus 471 ~~--ldp~~ 477 (478)
T 3ocf_A 471 IM--LDPLR 477 (478)
T ss_dssp HH--TCSCC
T ss_pred Hh--cCccc
Confidence 85 99986
No 25
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=7.2e-63 Score=531.82 Aligned_cols=417 Identities=17% Similarity=0.162 Sum_probs=309.1
Q ss_pred ccccccccCccCccCCCCccchHhhc--------ccchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-h
Q 009005 77 ELSSLTALSPLDGRYWSKVKDLAPYM--------SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI-D 147 (546)
Q Consensus 77 ~~~~~~~~sp~~~ry~~~~~~m~~if--------sd~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~-~ 147 (546)
+...|-.+..-..+|++ ...+|+++ .+..+++++..|++|++++++ ++|+||++.+++|.+.+..+ +
T Consensus 28 e~d~~g~~~vp~~~~~g-~qt~Ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~---~~G~l~~~~a~aI~~a~~ev~~ 103 (482)
T 3gtd_A 28 ESDSFGEIQIEEKFYWG-AQTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNY---EFGDLEYKIATSIDKAIDRILA 103 (482)
T ss_dssp EEETTEEEEEETTCCCC-HHHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccCCcccccC-HHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHc
Confidence 34444555555667775 44667766 578999999999999999999 99999998888886544322 1
Q ss_pred -----cCCcccHHHHHHH-HhhhCCch-hhHHHHHHHHhhcCchh---hhhcCccccCCChhhHHHHHHHHHHHHHHHHH
Q 009005 148 -----GFNMDDALEVKNI-ERVTNHDV-KAVEYFLKQKCQSQPEI---AKVLEFFHFACTSEDINNLAHALMLKEAINKV 217 (546)
Q Consensus 148 -----~~~~~d~~~i~~~-~~~~~hdv-~a~e~~L~e~~g~~~~~---~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~ 217 (546)
.|+. |. +... -..++-.+ ..+++.+.+.+|...+. ...+.|||+|+||||+++|+++|++++.+...
T Consensus 104 g~~~~~fp~-~~--~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~ 180 (482)
T 3gtd_A 104 GEFEDNFPL-VV--WQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQ 180 (482)
T ss_dssp TTTTTSCCC-BS--SSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCCe-eh--hccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 1111 00 0000 00011123 44678889999841100 02345678899999999999999999988424
Q ss_pred HHHHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccC-cccc
Q 009005 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAH 292 (546)
Q Consensus 218 l~~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT-~aa~ 292 (546)
|.+.|.+|+++|.++|++|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++|| |||| +++.
T Consensus 181 L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~ 260 (482)
T 3gtd_A 181 LIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSK 260 (482)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999985 3444555 6799 4432
Q ss_pred ccCCCCCChhhHHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccC
Q 009005 293 LSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTK 364 (546)
Q Consensus 293 ~~~~p~~d~~~v~~~la~~LGl~~~~~~~---~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~ 364 (546)
|+++ +++.+++++.|||+.++..+ ++++||+++|++++++.++++|+|||+||++|+| +|++. .+
T Consensus 261 ----~~~~-~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~--lp 333 (482)
T 3gtd_A 261 ----IGFD-IKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELH--LP 333 (482)
T ss_dssp ----TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEE--CC
T ss_pred ----chhH-HHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEE--CC
Confidence 2222 45788999999999754332 7889999999999999999999999999999985 56665 45
Q ss_pred CCCCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhh-c--chhhhcccCCcchhHHhHHhhHHHHHHHHH-HHHHhhh
Q 009005 365 AGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK-L--PISRWQRDLTDSTVLRNMGGGLGHSLLAYK-SALQGIA 440 (546)
Q Consensus 365 ~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~-l--~~~~~erDl~~s~~~~~l~~~~~~~~~~l~-~~~~~l~ 440 (546)
++++||||||||+||+.+|.+++.+ ..+.|+.... + ..+.+|++...+-+.++++..+.....++. ....|++
T Consensus 334 ~~~~GSSiMP~K~NPv~~E~i~~~a---~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~ 410 (482)
T 3gtd_A 334 ENEPGSSIMPGKVNPTQVEALTMVC---TQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVK 410 (482)
T ss_dssp CCSCCCSSSTTCCCCHHHHHHHHHH---HHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHH---HHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999854 4676664322 1 122346655444444555444444444333 4457999
Q ss_pred ccccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCchhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCc
Q 009005 441 KLQVNEARLSDDLNHAWEVLAEPIQTVM-RRYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHN 518 (546)
Q Consensus 441 ~L~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~ 518 (546)
+|+||++||+++++.+..+.+ .| +.+|++.|+++++++.+ ++.++++++.+.. +++++++++ |||..
T Consensus 411 gl~vn~erm~~~l~~s~~lvT-----aLa~~iGy~~a~~ia~~A~~----~g~~l~e~~~~~~~ls~eeld~~--ldP~~ 479 (482)
T 3gtd_A 411 GLEPNIARINTLRDKSLMLVT-----VLNPHIGYDNAAKIAKEAHK----YGITLKEAAKKLNFLSEEEFDKI--VVPEK 479 (482)
T ss_dssp TCEECHHHHHHHHHHCGGGHH-----HHHHHHCHHHHHHHHHHHHH----HTCCHHHHHHHTTSCCHHHHHHH--HSCC-
T ss_pred cCEECHHHHHHHHhhhhHHHH-----HhhhHHHHHHHHHHHHHHHH----hCCCHHHHHHHcCCCCHHHHHHH--cCHHH
Confidence 999999999999998887663 34 67899888888776654 6789999887654 899999985 99999
Q ss_pred ccC
Q 009005 519 YVG 521 (546)
Q Consensus 519 ~~G 521 (546)
|+|
T Consensus 480 ~~g 482 (482)
T 3gtd_A 480 MIS 482 (482)
T ss_dssp ---
T ss_pred hcC
Confidence 987
No 26
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=9e-61 Score=515.89 Aligned_cols=421 Identities=18% Similarity=0.164 Sum_probs=300.0
Q ss_pred ccccccccCccCccCCCC-ccchHhhc--c------cchhHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHH-
Q 009005 77 ELSSLTALSPLDGRYWSK-VKDLAPYM--S------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI- 146 (546)
Q Consensus 77 ~~~~~~~~sp~~~ry~~~-~~~m~~if--s------d~~~~~~~l~vE~A~a~aLa~~~~~GiIp~~aa~ai~~l~~~~- 146 (546)
+...|-.+..-..+|++- |..-..-| + ...+++++..|.+|+++++. ++| ||++.+++|.+.+..+
T Consensus 33 e~D~~G~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~---~~G-l~~~~a~aI~~a~~ev~ 108 (490)
T 3e04_A 33 EYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQ---DYG-LDPKIANAIMKAADEVA 108 (490)
T ss_dssp EEETTEEEEEETTCCCCHHHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGG---GGT-CCHHHHHHHHHHHHHHH
T ss_pred ccccCcCccCcchhhhhHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhh---hcC-CCHHHHHHHHHHHHHHH
Confidence 344455555556677751 11111222 1 24799999999999999999 999 9998888886544322
Q ss_pred hcCCcccHH-HHHHHH--hhhCCch-hhHHHHHHHHhhcCchh---hhhcCccccCCChhhHHHHHHHHHHHHHHHHHHH
Q 009005 147 DGFNMDDAL-EVKNIE--RVTNHDV-KAVEYFLKQKCQSQPEI---AKVLEFFHFACTSEDINNLAHALMLKEAINKVMF 219 (546)
Q Consensus 147 ~~~~~~d~~-~i~~~~--~~~~hdv-~a~e~~L~e~~g~~~~~---~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~ 219 (546)
+.-....+. .+.+.- ..++-.+ ..+++.+.+++|...+. -....|||+|+||||+++|+++|++|+.+...|.
T Consensus 109 ~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~ 188 (490)
T 3e04_A 109 EGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLL 188 (490)
T ss_dssp TTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 211000000 000000 0011123 45889999999851100 0123457779999999999999999988842499
Q ss_pred HHHHHHHHHHHHHHHHcccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHhh---hcccccc-cccC-cccccc
Q 009005 220 PVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLS 294 (546)
Q Consensus 220 ~~L~~l~~~L~~lA~~~~~t~m~gRTH~Q~A~PtTfG~~la~~~~~L~R~~~rL~~~~---~~g~~gG-AvGT-~aa~~~ 294 (546)
+.|.+|+++|.++|++|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++|| |||| +++.
T Consensus 189 ~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~-- 266 (490)
T 3e04_A 189 PGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTR-- 266 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTTSSCTTSC--
T ss_pred HHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCC--
Confidence 9999999999999999999999999999999999999999999999999999999985 3344444 6899 4432
Q ss_pred CCCCCChhhHHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcceecccCCC
Q 009005 295 AYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAG 366 (546)
Q Consensus 295 ~~p~~d~~~v~~~la~~LGl~~~~~~~---~~~~rD~~~e~~~~la~la~~L~kia~Dl~~~~s-----~G~~~~~~~~~ 366 (546)
|+++ ..+.+++++.|||+..+..+ ++.+||+++|++++++.++++|+|||+||++|+| +|++. .+++
T Consensus 267 --~~~~-~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~--lp~~ 341 (490)
T 3e04_A 267 --IGFA-EKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELI--LPEN 341 (490)
T ss_dssp --TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEE--CCCC
T ss_pred --hhHH-HHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEE--CCCC
Confidence 2222 45788999999999744332 7889999999999999999999999999999985 56665 4578
Q ss_pred CCCCCCCCCCCChhhHhhhhhchhhhhhHHHHHHhh-cc--hhhhcccCCcchhHHhHHhhHHHHHHHHH-HHHHhhhcc
Q 009005 367 EIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK-LP--ISRWQRDLTDSTVLRNMGGGLGHSLLAYK-SALQGIAKL 442 (546)
Q Consensus 367 ~~GSS~MPhKrNPv~~E~~~g~~~la~~~~~~~~~~-l~--~~~~erDl~~s~~~~~l~~~~~~~~~~l~-~~~~~l~~L 442 (546)
++||||||||+||+.+|.+++.+. .+.|+.... +. .+.+|++...+-+.++++..+.....++. ....|+++|
T Consensus 342 ~~GSSiMP~K~NPv~~E~i~~~a~---~v~G~~~ai~~a~~~g~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl 418 (490)
T 3e04_A 342 EPGSSIMPGKVNPTQCEAMTMVAA---QVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGI 418 (490)
T ss_dssp SCC-----CCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHH---HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999998544 666654222 11 22234433333334455444444444444 345799999
Q ss_pred ccCHHHHHHHHhhhhhHHHHHHHHHH-HhcCchhHHHHHHHHhhccccccccHHHHHhhCC-CCHHHHHhccccCcCccc
Q 009005 443 QVNEARLSDDLNHAWEVLAEPIQTVM-RRYGVPEPYEKLKELTRGKVVTKESIREFIIGLE-LPEEAKANLLNLTPHNYV 520 (546)
Q Consensus 443 ~Vn~erm~~nl~~~~~i~aE~~~~~l-~~~G~~~Ah~iv~~~~~~a~~~~~~l~e~~~~~~-l~~~~~~~l~~ldP~~~~ 520 (546)
+||++||+++++.+..+.+ .| +.+|++.|+++++++.+ ++.++++++.+.. +++++++++ |||..|+
T Consensus 419 ~vn~erm~~~l~~s~~lvT-----aLa~~iGy~~a~~iak~A~~----~g~~l~e~~~~~~~ls~eeld~~--ldP~~~~ 487 (490)
T 3e04_A 419 QANTERINKLMNESLMLVT-----ALNPHIGYDKAAKIAKTAHK----NGSTLKETAIELGYLTAEQFDEW--VKPKDML 487 (490)
T ss_dssp EECHHHHHHHHHHCSGGGG-----GGHHHHCHHHHHHHHHHHHH----HTCCHHHHHHHHTSCCHHHHHHH--CCGGGSS
T ss_pred EECHHHHHHHHhhchHHHH-----HhhhHHHHHHHHHHHHHHHH----HCCCHHHHHHHcCCCCHHHHHHH--cCHHHhc
Confidence 9999999999998887653 34 67798888888776554 6889999876544 899999985 9999999
Q ss_pred Cc
Q 009005 521 GA 522 (546)
Q Consensus 521 G~ 522 (546)
|+
T Consensus 488 g~ 489 (490)
T 3e04_A 488 GP 489 (490)
T ss_dssp CC
T ss_pred CC
Confidence 86
Done!