Query 009006
Match_columns 546
No_of_seqs 223 out of 919
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 19:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1134 Uncharacterized conser 100.0 1.6E-91 3.5E-96 771.9 48.7 520 1-527 179-709 (728)
2 COG5594 Uncharacterized integr 100.0 9.6E-90 2.1E-94 733.2 41.8 487 4-493 203-721 (827)
3 PF02714 DUF221: Domain of unk 100.0 1.4E-69 3E-74 558.9 36.2 323 136-458 1-325 (325)
4 PF04547 Anoctamin: Calcium-ac 99.3 3.5E-09 7.6E-14 114.3 29.0 266 174-458 107-397 (452)
5 PF14703 DUF4463: Domain of un 99.1 9.2E-11 2E-15 96.4 6.9 71 47-117 1-85 (85)
6 KOG2513 Protein required for m 98.2 0.00073 1.6E-08 72.7 26.0 257 178-458 260-556 (647)
7 TIGR01659 sex-lethal sex-letha 97.3 0.00088 1.9E-08 69.6 8.6 42 5-52 103-144 (346)
8 PLN03134 glycine-rich RNA-bind 96.6 0.02 4.4E-07 51.8 10.4 38 7-50 32-69 (144)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 96.4 0.022 4.9E-07 59.2 11.0 102 8-191 2-111 (352)
10 TIGR01628 PABP-1234 polyadenyl 96.4 0.01 2.2E-07 66.0 8.9 171 11-192 2-201 (562)
11 PLN03120 nucleic acid binding 96.3 0.025 5.5E-07 55.6 9.8 34 9-48 4-37 (260)
12 PF00076 RRM_1: RNA recognitio 96.3 0.014 3.1E-07 44.9 6.6 32 12-49 1-32 (70)
13 KOG0144 RNA-binding protein CU 96.3 0.016 3.6E-07 59.6 8.4 135 7-156 32-188 (510)
14 TIGR01648 hnRNP-R-Q heterogene 96.0 0.03 6.5E-07 61.7 9.3 40 7-52 56-95 (578)
15 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.8 0.066 1.4E-06 55.7 10.6 37 8-50 268-304 (352)
16 KOG0149 Predicted RNA-binding 95.1 0.06 1.3E-06 51.6 6.8 31 12-48 15-45 (247)
17 KOG4211 Splicing factor hnRNP- 95.1 0.048 1E-06 57.3 6.5 38 6-50 7-44 (510)
18 KOG0125 Ataxin 2-binding prote 95.0 0.096 2.1E-06 52.4 7.9 39 6-50 93-131 (376)
19 TIGR01628 PABP-1234 polyadenyl 94.5 0.26 5.7E-06 54.9 11.2 39 7-51 176-214 (562)
20 KOG0122 Translation initiation 94.3 0.16 3.4E-06 49.0 7.5 37 8-50 188-224 (270)
21 TIGR01648 hnRNP-R-Q heterogene 93.9 0.22 4.7E-06 55.1 8.7 39 132-170 268-308 (578)
22 TIGR01645 half-pint poly-U bin 93.3 0.46 9.9E-06 52.8 9.9 87 8-176 203-291 (612)
23 KOG2514 Uncharacterized conser 93.1 1.4 3.1E-05 49.7 13.2 53 239-291 436-488 (861)
24 TIGR01622 SF-CC1 splicing fact 92.4 0.45 9.9E-06 51.4 8.4 36 8-49 88-123 (457)
25 PLN03121 nucleic acid binding 92.1 0.24 5.2E-06 48.1 5.1 38 7-50 3-40 (243)
26 KOG4206 Spliceosomal protein s 92.0 0.84 1.8E-05 43.7 8.4 45 131-175 50-96 (221)
27 KOG0127 Nucleolar protein fibr 91.6 0.55 1.2E-05 50.2 7.4 33 10-48 293-325 (678)
28 PF04059 RRM_2: RNA recognitio 91.6 0.29 6.4E-06 40.9 4.4 38 10-51 2-39 (97)
29 TIGR01642 U2AF_lg U2 snRNP aux 91.4 1.2 2.5E-05 48.9 10.4 35 8-48 294-328 (509)
30 KOG0117 Heterogeneous nuclear 91.0 0.77 1.7E-05 48.0 7.6 135 6-167 80-246 (506)
31 TIGR01622 SF-CC1 splicing fact 90.8 1.4 3.1E-05 47.6 10.1 36 7-48 184-219 (457)
32 smart00362 RRM_2 RNA recogniti 90.2 0.53 1.1E-05 35.4 4.5 34 11-50 1-34 (72)
33 TIGR01645 half-pint poly-U bin 90.1 1.1 2.4E-05 49.9 8.5 37 8-50 106-142 (612)
34 PF14259 RRM_6: RNA recognitio 90.0 0.47 1E-05 36.5 4.1 31 12-48 1-31 (70)
35 KOG0148 Apoptosis-promoting RN 89.3 0.78 1.7E-05 45.0 5.7 114 8-153 5-124 (321)
36 KOG0145 RNA-binding protein EL 88.4 2.3 4.9E-05 41.5 8.1 145 11-169 43-209 (360)
37 KOG4212 RNA-binding protein hn 86.9 2.9 6.3E-05 43.7 8.3 41 3-48 38-78 (608)
38 PF13893 RRM_5: RNA recognitio 86.2 1.1 2.4E-05 32.9 3.8 24 133-156 21-44 (56)
39 cd00590 RRM RRM (RNA recogniti 85.7 1.4 3.1E-05 33.1 4.5 33 11-49 1-33 (74)
40 KOG1365 RNA-binding protein Fu 85.5 8.4 0.00018 39.7 10.7 26 130-155 321-346 (508)
41 KOG0109 RNA-binding protein LA 84.4 0.95 2.1E-05 44.8 3.4 35 12-52 5-39 (346)
42 PF07810 TMC: TMC domain; Int 84.2 9.7 0.00021 32.7 9.1 54 371-429 47-105 (111)
43 KOG0117 Heterogeneous nuclear 82.1 1.9 4.2E-05 45.1 4.7 42 6-52 161-202 (506)
44 KOG1548 Transcription elongati 82.0 10 0.00022 38.7 9.6 44 113-156 286-337 (382)
45 KOG1457 RNA binding protein (c 80.7 7.1 0.00015 37.4 7.5 25 9-37 34-58 (284)
46 KOG0108 mRNA cleavage and poly 80.2 7.1 0.00015 41.8 8.3 35 10-50 19-53 (435)
47 TIGR01659 sex-lethal sex-letha 77.1 3.4 7.3E-05 43.1 4.8 38 7-50 191-228 (346)
48 smart00361 RRM_1 RNA recogniti 75.6 3.9 8.4E-05 31.7 3.6 25 132-156 36-60 (70)
49 smart00360 RRM RNA recognition 73.6 4.7 0.0001 29.8 3.7 30 14-49 1-30 (71)
50 PF14259 RRM_6: RNA recognitio 72.2 3.6 7.9E-05 31.4 2.8 24 131-154 37-60 (70)
51 KOG0107 Alternative splicing f 70.3 4 8.7E-05 37.7 2.9 36 130-165 44-81 (195)
52 COG0724 RNA-binding proteins ( 70.0 6.5 0.00014 38.0 4.7 37 9-51 115-151 (306)
53 KOG0123 Polyadenylate-binding 68.8 18 0.00038 38.1 7.8 33 12-50 79-111 (369)
54 smart00360 RRM RNA recognition 64.7 8.9 0.00019 28.2 3.5 24 131-154 36-59 (71)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 64.5 9.2 0.0002 41.7 4.9 36 9-50 2-37 (481)
56 smart00362 RRM_2 RNA recogniti 63.4 9.5 0.0002 28.2 3.5 25 131-155 37-61 (72)
57 PF07292 NID: Nmi/IFP 35 domai 60.1 4.2 9.1E-05 33.4 0.9 29 6-38 49-77 (88)
58 TIGR01649 hnRNP-L_PTB hnRNP-L/ 59.0 18 0.00039 39.5 5.9 39 7-51 273-312 (481)
59 KOG0132 RNA polymerase II C-te 56.9 6.4 0.00014 44.2 1.9 43 4-52 416-458 (894)
60 PF02654 CobS: Cobalamin-5-pho 56.7 1.8E+02 0.0039 28.4 12.0 124 362-489 86-214 (235)
61 cd00590 RRM RRM (RNA recogniti 56.6 15 0.00032 27.3 3.5 25 132-156 39-63 (74)
62 PF15176 LRR19-TM: Leucine-ric 56.0 42 0.00091 28.1 6.0 24 427-450 8-31 (102)
63 KOG0146 RNA-binding protein ET 52.2 29 0.00063 34.2 5.3 50 131-192 58-112 (371)
64 KOG0131 Splicing factor 3b, su 51.7 63 0.0014 30.3 7.1 40 5-50 5-44 (203)
65 PF14605 Nup35_RRM_2: Nup53/35 49.6 22 0.00047 26.1 3.2 32 10-48 2-33 (53)
66 PF02388 FemAB: FemAB family; 48.8 1.2E+02 0.0026 32.3 10.0 83 38-142 227-315 (406)
67 KOG0105 Alternative splicing f 46.6 29 0.00064 32.4 4.2 40 5-50 111-150 (241)
68 PF14362 DUF4407: Domain of un 45.9 1.1E+02 0.0024 31.0 8.9 60 399-459 45-107 (301)
69 KOG2150 CCR4-NOT transcription 44.7 62 0.0013 35.5 6.9 24 101-124 119-142 (575)
70 KOG0105 Alternative splicing f 44.7 24 0.00052 32.9 3.3 33 8-46 5-37 (241)
71 KOG4050 Glutamate transporter 43.8 1.8E+02 0.0039 26.6 8.5 44 164-207 32-76 (188)
72 TIGR01642 U2AF_lg U2 snRNP aux 43.7 40 0.00087 36.8 5.7 30 4-37 170-199 (509)
73 PF14257 DUF4349: Domain of un 41.8 3.6E+02 0.0077 26.6 14.7 25 102-126 160-184 (262)
74 PF06570 DUF1129: Protein of u 40.8 2.5E+02 0.0055 26.7 10.0 21 468-488 182-202 (206)
75 KOG1304 Amino acid transporter 39.7 3.4E+02 0.0073 29.4 11.4 112 319-442 312-428 (449)
76 PF10309 DUF2414: Protein of u 37.3 83 0.0018 24.0 4.7 41 8-53 4-53 (62)
77 PLN03213 repressor of silencin 36.5 53 0.0011 35.3 4.7 39 7-51 8-46 (759)
78 KOG0107 Alternative splicing f 36.0 62 0.0014 30.1 4.5 40 7-52 8-47 (195)
79 KOG4205 RNA-binding protein mu 35.7 43 0.00093 34.3 3.9 40 9-54 97-136 (311)
80 COG5438 Predicted multitransme 35.6 3.6E+02 0.0077 28.3 10.4 60 238-297 205-264 (385)
81 KOG3142 Prenylated rab accepto 35.3 50 0.0011 31.1 3.9 44 377-420 65-109 (187)
82 PF11608 Limkain-b1: Limkain b 35.1 72 0.0016 26.0 4.2 41 132-172 38-80 (90)
83 KOG0113 U1 small nuclear ribon 34.9 47 0.001 33.4 3.8 36 9-50 101-136 (335)
84 PLN03121 nucleic acid binding 33.9 68 0.0015 31.5 4.7 21 131-151 42-62 (243)
85 KOG0114 Predicted RNA-binding 33.1 64 0.0014 27.4 3.8 34 10-49 19-52 (124)
86 PF05620 DUF788: Protein of un 33.0 3.9E+02 0.0085 24.6 9.6 66 409-474 53-127 (170)
87 PF11874 DUF3394: Domain of un 32.0 55 0.0012 30.8 3.7 61 441-501 7-67 (183)
88 KOG4208 Nucleolar RNA-binding 30.6 49 0.0011 31.5 3.1 23 131-153 90-112 (214)
89 KOG0114 Predicted RNA-binding 30.4 49 0.0011 28.1 2.7 25 131-155 55-79 (124)
90 PF09874 DUF2101: Predicted me 28.8 2.8E+02 0.0062 26.4 7.7 94 393-496 50-149 (206)
91 PF03208 PRA1: PRA1 family pro 28.8 1.9E+02 0.0042 25.9 6.7 36 385-420 44-80 (153)
92 KOG0144 RNA-binding protein CU 28.7 73 0.0016 33.7 4.2 47 109-156 47-99 (510)
93 PF04109 APG9: Autophagy prote 27.4 1.7E+02 0.0038 30.7 6.8 36 387-422 120-156 (370)
94 PF11823 DUF3343: Protein of u 26.9 88 0.0019 24.3 3.6 36 134-172 2-37 (73)
95 COG3833 MalG ABC-type maltose 26.0 6.9E+02 0.015 25.1 15.5 81 181-262 6-96 (282)
96 COG0368 CobS Cobalamin-5-phosp 25.9 6.5E+02 0.014 24.8 11.6 121 363-489 91-218 (246)
97 KOG0130 RNA-binding protein RB 25.8 85 0.0018 27.9 3.5 42 4-51 67-108 (170)
98 KOG0533 RRM motif-containing p 25.3 99 0.0022 30.5 4.3 41 5-51 79-119 (243)
99 PRK09702 PTS system arbutin-sp 24.6 67 0.0015 29.6 2.8 23 401-423 11-33 (161)
100 PF15159 PIG-Y: Phosphatidylin 24.5 66 0.0014 25.4 2.3 26 394-419 43-68 (72)
101 KOG0071 GTP-binding ADP-ribosy 24.5 1.2E+02 0.0025 27.4 4.1 58 11-69 55-112 (180)
102 PF11945 WASH_WAHD: WAHD domai 24.4 2E+02 0.0042 29.4 6.4 40 105-144 44-83 (297)
103 PF04059 RRM_2: RNA recognitio 24.4 83 0.0018 26.3 3.1 26 131-156 43-68 (97)
104 PRK11020 hypothetical protein; 24.3 2.9E+02 0.0063 23.7 6.2 20 106-125 33-52 (118)
105 KOG0121 Nuclear cap-binding pr 24.0 76 0.0016 28.0 2.8 39 7-51 34-72 (153)
106 KOG0153 Predicted RNA-binding 23.6 77 0.0017 32.6 3.2 45 131-180 262-309 (377)
107 KOG0110 RNA-binding protein (R 23.2 2E+02 0.0043 32.5 6.4 61 131-191 558-635 (725)
108 KOG0226 RNA-binding proteins [ 22.4 1.4E+02 0.003 29.6 4.5 25 130-154 229-253 (290)
109 PHA03011 hypothetical protein; 22.3 1.3E+02 0.0028 25.1 3.7 65 47-121 52-116 (120)
110 KOG0148 Apoptosis-promoting RN 22.0 1.5E+02 0.0032 29.7 4.6 40 5-50 160-199 (321)
111 KOG0106 Alternative splicing f 21.6 58 0.0013 31.5 1.8 28 132-159 132-159 (216)
112 KOG1855 Predicted RNA-binding 20.9 1.9E+02 0.0041 30.8 5.4 38 7-50 229-266 (484)
113 PF11608 Limkain-b1: Limkain b 20.1 1.1E+02 0.0025 24.9 2.9 33 10-46 3-38 (90)
No 1
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=1.6e-91 Score=771.91 Aligned_cols=520 Identities=38% Similarity=0.679 Sum_probs=481.4
Q ss_pred CCCCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHH-HHHHHHHHHHhhhc
Q 009006 1 MSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYK-KKLARAEAVYAESK 79 (546)
Q Consensus 1 ~~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~-~~Le~~~~~~~~~k 79 (546)
+++..+++++|+.++++|+ ..+++.....+++|+..+|+++.++++++|..++.++.+++++.. +++.+...+..
T Consensus 179 ~~~~~~~~~~s~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~k~~~~~l~~~~~~~~--- 254 (728)
T KOG1134|consen 179 ASPKYRPDQSSVLVRNVPP-PDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESKLSKLLSKLKKLRENKLYKEHKRLK--- 254 (728)
T ss_pred hCcCcCccccchhhhcccC-CCCCchhhHHhhhhhccCCceeehhHHHhhHHHHHHHHHHHHHHhHHHHHHhhhhhc---
Confidence 3677889999999999993 333455677788888888999999999999999999999999984 33333322211
Q ss_pred cCCCCCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccCCCC
Q 009006 80 SAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVD 159 (546)
Q Consensus 80 ~~~~~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~ 159 (546)
..+. +||++|.|+||++|+|||+||||++|+++++++|+++|+...+.+..+.|||||+|+.+|+.|+|..++.+++
T Consensus 255 --~~~~-~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~~~~~~aFVtf~sr~~A~~~aq~~~~~~~~ 331 (728)
T KOG1134|consen 255 --SNPK-KRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEEKPLPAAFVTFKSRYGAAVAAQTQQSLNPT 331 (728)
T ss_pred --cccc-cCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEeeHHHHHHHHhhhcCCCC
Confidence 1223 8999999999999999999999999999999999999998876678999999999999999999999999999
Q ss_pred ceeeecCCCCCcceeccccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcchhhhhhhcccchhhhcchhHHHHHH
Q 009006 160 TWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINITALKTVLE 239 (546)
Q Consensus 160 ~~~v~~APeP~DI~W~Nl~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~~~l~~~~p~l~~~~~~~~~~~~i~ 239 (546)
.|.++.||||+||.|+|+..+.++|+.|+++++++.+++++||++|+++|++++|++.|++.+||++++.+.++++++|+
T Consensus 332 ~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l~~~~Pflk~i~~~~~i~~vI~ 411 (728)
T KOG1134|consen 332 KWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGLSKVFPFLKPILEMKFISSVIT 411 (728)
T ss_pred ceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHhcCcchHHHHHHH
Q 009006 240 AYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLAN 319 (546)
Q Consensus 240 ~~lP~lil~~~n~llp~il~~ls~~e~~~s~S~~~~s~~~k~f~f~~iN~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~ 319 (546)
|+||++++.++++++|.++++++++|||.|+|+.|++.+.|+|+|+++|+|++++++|+.++.+..++++|.+++..+|.
T Consensus 412 gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~~l~~p~~i~~~la~ 491 (728)
T KOG1134|consen 412 GFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLLSILSTPRLIPKLLAA 491 (728)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHhcCHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hCCCchhHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhccCCHHHHHHhcCC-CCCCccccchHHHHHHHHHHHhhhh
Q 009006 320 SLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAWFP-GDLGYGTRVPSDMLIVTIVFCYSCI 398 (546)
Q Consensus 320 ~lp~~s~fFi~yii~~~~~~~~~~llr~~~l~~~~~~~~~~~~T~re~~~~~~~-~~f~~~~~y~~~l~~~~i~l~Ys~i 398 (546)
++|++++||++|++++|+.|.+++++|+.+|+++++++.+..+|+|++++.+++ +.+++|..||..+++++||++||++
T Consensus 492 ~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~g~~yP~~~~~f~i~i~Ysvi 571 (728)
T KOG1134|consen 492 ALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYFGTIYPRILLIFTIGICYSVI 571 (728)
T ss_pred hChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccchhhhccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999997 7899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeeccCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHhhccccch-hhhHHHHHHHH
Q 009006 399 APLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQITMLGYFGSKKFIYV-GFLIPLPILSL 477 (546)
Q Consensus 399 ~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~~~g~f~lk~~~~~-~~~~~l~i~t~ 477 (546)
+|+|+|||++||++.|+|||||++|||.++|||||++||.+++++++|++++|++|+|+|++|+.+.+ .+++|++++|+
T Consensus 572 aPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~~~s~~~~~l~~lTi 651 (728)
T KOG1134|consen 572 APLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFGLFSLKKGAVASVLLFPLIVLTI 651 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998654 59999999999
Q ss_pred HHHHHHHhcccccccccchHHHhhhcccC----CCc----cccccccCCCCCCCCCCC
Q 009006 478 IFVYICQKRFYKSFSDTALEVASRELKET----PSM----EHIFRSYIPLSLNSEKVD 527 (546)
Q Consensus 478 ~f~~~~~~~~~~~~~~~pl~~~~~~d~~~----~~~----~~~~~~Y~~p~l~~~~~~ 527 (546)
+||.+|..+|.|.+.++|++.+..+|..+ ++. ....++|.+|++.+.+++
T Consensus 652 ~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 709 (728)
T KOG1134|consen 652 LFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGSDS 709 (728)
T ss_pred HHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccccccccCccccccccc
Confidence 99999999999999999999999777543 222 457999999999988744
No 2
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=9.6e-90 Score=733.19 Aligned_cols=487 Identities=28% Similarity=0.496 Sum_probs=453.2
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAES----- 78 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~----- 78 (546)
+.+.+++||+++++|.++++ +++++++|+++.-+++.+..+|||.+.++++.++|++..+++|.+..++...
T Consensus 203 ~~~~ssRTvlis~LP~~~~~---~e~L~~~~~kl~~~~i~~~~l~~~~~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~ 279 (827)
T COG5594 203 QNNLSSRTVLISGLPSELRS---DEELKELFDKLKVGEIDSDVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKS 279 (827)
T ss_pred ccCCCCceEEeecCChhhcC---chhHHHHHhhcCeeeeccchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35679999999999999998 8889999999988888899999999999999999999999999988765321
Q ss_pred -----cc----------------CCCCCCCCCccccccc--CCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCce
Q 009006 79 -----KS----------------AGKPEGTRPTIKTGFL--GLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGA 135 (546)
Q Consensus 79 -----k~----------------~~~~~~~rP~~r~g~~--~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~ 135 (546)
|+ ...|+++||+||.+-. ++.|+|||+|||+++++.+++++|++.|+...+...+++
T Consensus 280 ~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~ 359 (827)
T COG5594 280 HLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENTPTKS 359 (827)
T ss_pred hHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceecHHHHHHHHHHHHHHHHHHHHhCccccCcccc
Confidence 11 0235678999998754 678999999999999999999999999998766667889
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCCcee-eecCCCCCcceeccccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 009006 136 ALVFFTSRVAAASAAQSLHAQLVDTWT-VSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTT 214 (546)
Q Consensus 136 AFVtF~s~~~a~~a~q~~~~~~~~~~~-v~~APeP~DI~W~Nl~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~ 214 (546)
|||||+|+..||.|+|.+..+++.... ++.||+|+||+|+|+..++++|..|++.++.++++++++|++|||+++.++|
T Consensus 360 ~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~N 439 (827)
T COG5594 360 GFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISN 439 (827)
T ss_pred EEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888877655 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccchhhhc-chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHhhHHHHHHHHHHHHH
Q 009006 215 LDNLKKILPFLKPVIN-ITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGV 293 (546)
Q Consensus 215 ~~~l~~~~p~l~~~~~-~~~~~~~i~~~lP~lil~~~n~llp~il~~ls~~e~~~s~S~~~~s~~~k~f~f~~iN~~lv~ 293 (546)
++++++.+||++.+.+ .|+++++++|+||++++.+++.++|+++++|+.+||..|+|+.|+.++.|||.|+|+|.|+|.
T Consensus 440 l~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~ 519 (827)
T COG5594 440 LNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVV 519 (827)
T ss_pred chhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehhee
Confidence 9999999999998875 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhcCcchHHHHHHHhCCCchhHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhccCCHHHH-HHhcC
Q 009006 294 TVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAEL-KEAWF 372 (546)
Q Consensus 294 ~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~fFi~yii~~~~~~~~~~llr~~~l~~~~~~~~~~~~T~re~-~~~~~ 372 (546)
+++++..+.+.++.++|.++..++++++|++|+||++||+++|+.+.+++|+|+++|+++.++.++.++|||++ ++...
T Consensus 520 Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~ 599 (827)
T COG5594 520 TLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFPGTLLQIVPLLLSLVLGKFKDSTPRQKWNRLET 599 (827)
T ss_pred eehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhhcCCChHHHHhhccC
Confidence 99998888888999999999999999999999999999999999999999999999999899999999999997 45556
Q ss_pred CCCCCccccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeccCCcCCccccHHHHHHHHHHHHHHHHH
Q 009006 373 PGDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQI 452 (546)
Q Consensus 373 ~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~ 452 (546)
++.|+||..||+.+.+++|+++||+++|+|+.||++||++.|++|||+++|+++.++||||++||.+++|+++|+++||+
T Consensus 600 ~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv 679 (827)
T COG5594 600 PPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNLIYVSNHSPESGGGYWPRALFQIIVGLYLFQV 679 (827)
T ss_pred CCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccCCCccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccch-hhhHHHHHHHHHHHHHHHhcccccccc
Q 009006 453 TMLGYFGSKKFIYV-GFLIPLPILSLIFVYICQKRFYKSFSD 493 (546)
Q Consensus 453 ~~~g~f~lk~~~~~-~~~~~l~i~t~~f~~~~~~~~~~~~~~ 493 (546)
||+|+|++.++++. .+++|++.+|++||.+|+++|.|.+.+
T Consensus 680 ~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~ 721 (827)
T COG5594 680 CLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKY 721 (827)
T ss_pred HHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999998764 599999999999999999999966543
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=1.4e-69 Score=558.93 Aligned_cols=323 Identities=42% Similarity=0.746 Sum_probs=313.3
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCCceeeecCCCCCcceeccccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcch
Q 009006 136 ALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTL 215 (546)
Q Consensus 136 AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~APeP~DI~W~Nl~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~ 215 (546)
|||||+++++|+.|+|..++++|.+|++++||||+||+|+|++.+.++|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchhhhc-chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHhhHHHHHHHHHHHHHh
Q 009006 216 DNLKKILPFLKPVIN-ITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVT 294 (546)
Q Consensus 216 ~~l~~~~p~l~~~~~-~~~~~~~i~~~lP~lil~~~n~llp~il~~ls~~e~~~s~S~~~~s~~~k~f~f~~iN~~lv~~ 294 (546)
+++++..|+++++.+ ++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+|+++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998854 5677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhcCcchHHHHHHHhCCCchhHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhccCCHHHHHHhc-CC
Q 009006 295 VGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAW-FP 373 (546)
Q Consensus 295 l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~fFi~yii~~~~~~~~~~llr~~~l~~~~~~~~~~~~T~re~~~~~-~~ 373 (546)
+++++++.+.++.++|+++.+.+|.++|++++||++|++++++.+.+++|+|+.+++++.+++++..+||||+++.+ ++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999988888777779999999988 99
Q ss_pred CCCCccccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeccCCcCCccccHHHHHHHHHHHHHHHHHH
Q 009006 374 GDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQIT 453 (546)
Q Consensus 374 ~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~ 453 (546)
++|+||..||..+++++|+++||+++|+++|+|++||++.|++||||++|+|+++|||||++||.+++++++|++++|++
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~ 320 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT 320 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 009006 454 MLGYF 458 (546)
Q Consensus 454 ~~g~f 458 (546)
|+|+|
T Consensus 321 ~~g~f 325 (325)
T PF02714_consen 321 MIGLF 325 (325)
T ss_pred HHHhC
Confidence 99986
No 4
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.27 E-value=3.5e-09 Score=114.30 Aligned_cols=266 Identities=16% Similarity=0.161 Sum_probs=162.0
Q ss_pred eccccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcchhh-hhhhcccchhhhcchhHHHHHHHHhHHHHHHHHHH
Q 009006 174 WNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDN-LKKILPFLKPVINITALKTVLEAYLPQIALIVFLA 252 (546)
Q Consensus 174 W~Nl~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~~~-l~~~~p~l~~~~~~~~~~~~i~~~lP~lil~~~n~ 252 (546)
..+...+.++|..|...+..++++++.. -++++.++..++. +.+..... ......+++.+++-++++.++|.
T Consensus 107 ~~~~~~p~~~r~~r~~~s~~ivl~~i~i---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vl~~v~i~il~~ 179 (452)
T PF04547_consen 107 EMEPYYPPWKRILRYLVSVPIVLLFILI---VIGIVIGVFYLRIYLTEIYSGP----GKQFLASLIPTVLNAVVILILNF 179 (452)
T ss_pred CCccCCcHHHHhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhhhh
Confidence 4466778888999986666555444322 1222222222211 11110000 01123344445555555566677
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHhcCcchHHHHHHHhCCCchhHHHHHH
Q 009006 253 LLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYV 332 (546)
Q Consensus 253 llp~il~~ls~~e~~~s~S~~~~s~~~k~f~f~~iN~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~fFi~yi 332 (546)
+...+...|+++|.|+|.++.|.|...|.|.|+++|.+...... +.+....+--=++ ...+ -+.-+..++
T Consensus 180 iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~~~-~~~~--------L~~ql~~~~ 249 (452)
T PF04547_consen 180 IYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEECQP-CLSR--------LRIQLFTIM 249 (452)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccCC-CHHH--------HHHHHHHHH
Confidence 77888899999999999999999999999999999999855443 2222110000011 1111 123334445
Q ss_pred HHHHhhhhhHHhhhHHHHHHHHHHHh-hcc---CCH--------------HHHHHhcCCCCCCcc---ccchHHHHHHHH
Q 009006 333 ALQFFVGYGLELSRIVPLIIYHLKRK-YLC---KTE--------------AELKEAWFPGDLGYG---TRVPSDMLIVTI 391 (546)
Q Consensus 333 i~~~~~~~~~~llr~~~l~~~~~~~~-~~~---~T~--------------re~~~~~~~~~f~~~---~~y~~~l~~~~i 391 (546)
+++-+.....+.. .|.+.+..+++ ... ++. .+.++-...++++.. ..|..+..-+..
T Consensus 250 ~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~emviQFGy 327 (452)
T PF04547_consen 250 VTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYLEMVIQFGY 327 (452)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHHHHHHHHHH
Confidence 5554555555543 55555444332 111 110 000111234555543 789999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeccCCc---CCccccHHHHHHHHHHHHHHHHHHHHHHH
Q 009006 392 VFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY---ESYGRMWPHMFLRLVAALLLYQITMLGYF 458 (546)
Q Consensus 392 ~l~Ys~i~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~---esgG~~~~~~~~~~~~~l~i~q~~~~g~f 458 (546)
..+|+++.|+...++++.-++-.-+|++.+++.++|+. .++=..|-.++..+...-++....++++-
T Consensus 328 v~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~ 397 (452)
T PF04547_consen 328 VTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFT 397 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999997653 22334799988888777777666666554
No 5
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=99.14 E-value=9.2e-11 Score=96.42 Aligned_cols=71 Identities=39% Similarity=0.667 Sum_probs=58.6
Q ss_pred EecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccC---CC----------CCCCCCcccccccCCCC-ccccHHHHHHHH
Q 009006 47 VVTNNKEANKIYEELEGYKKKLARAEAVYAESKSA---GK----------PEGTRPTIKTGFLGLLG-KRVDAIEYYNEK 112 (546)
Q Consensus 47 ~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~---~~----------~~~~rP~~r~g~~~~~g-~kvd~i~~~~~~ 112 (546)
+|||+++|.+|+++|+++.++||.++.+|.+.... .. ....||.++.|++|++| ++||+||||+++
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 58999999999999999999999999998654320 00 11346777889999988 999999999999
Q ss_pred HHHHh
Q 009006 113 IKEII 117 (546)
Q Consensus 113 l~~l~ 117 (546)
|++||
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99885
No 6
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.00073 Score=72.65 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=142.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcchhhhhhhcccchhhhcchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 009006 178 NIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINITALKTVLEAYLPQIALIVFLALLPKL 257 (546)
Q Consensus 178 ~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~lP~lil~~~n~llp~i 257 (546)
..+.|.|.+|+..+.+-++++++....++.+...- ++. +.......| +.+ +-.++|++++.++..++..+
T Consensus 260 ~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~--ie~------~~~s~~~~~-~~s-ils~lP~iv~~~li~~~t~~ 329 (647)
T KOG2513|consen 260 YYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQ--IEV------WVLSDYGGP-LIS-ILSYLPTIVYAVLIPVLTRI 329 (647)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHH------HHHHHcCCc-hHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45678889999888877777766655555444322 211 111111223 222 44688988888777666555
Q ss_pred HH----HHHhccCCCchhHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHhcCcchHHHHHHHhCCCchhHHHHHHH
Q 009006 258 LL----FLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVA 333 (546)
Q Consensus 258 l~----~ls~~e~~~s~S~~~~s~~~k~f~f~~iN~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~fFi~yii 333 (546)
-+ +|.++|.|+++|.++++...|.+.|+|+|.++.-...+-+..-. ...-..++.-+-. +.++
T Consensus 330 Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~-------~~Lk~~l~~~li~------sQ~l 396 (647)
T KOG2513|consen 330 YKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDM-------ELLKQQLATLLIT------SQSL 396 (647)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHH------HHHH
Confidence 54 55589999999999999999999999999998544443222111 1111122211100 0000
Q ss_pred HHHhh-hhhHHhhhHH--HHHHHHHHHhhc---cCCHHHHH---------------Hh--------cCCCCCCcc---cc
Q 009006 334 LQFFV-GYGLELSRIV--PLIIYHLKRKYL---CKTEAELK---------------EA--------WFPGDLGYG---TR 381 (546)
Q Consensus 334 ~~~~~-~~~~~llr~~--~l~~~~~~~~~~---~~T~re~~---------------~~--------~~~~~f~~~---~~ 381 (546)
.+..= ..+--..|.. .-.++...+... ..++.+.+ +. .+...-.|. ..
T Consensus 397 ~~~~e~~~p~f~~~~~r~~~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~E~~~~~ydgtf~D 476 (647)
T KOG2513|consen 397 LNLMEIALPYFKIRTKRYENYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAELESGLAEYDGTFDD 476 (647)
T ss_pred HHHHhhcchHHHHhhhhhhhhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhhcchhhhhcchhHH
Confidence 00000 0000000000 000000000000 00111111 00 011111222 33
Q ss_pred chHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeccCCc----CCccccHHHHHHHHHHHHHHHHHHHHHH
Q 009006 382 VPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY----ESYGRMWPHMFLRLVAALLLYQITMLGY 457 (546)
Q Consensus 382 y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~----esgG~~~~~~~~~~~~~l~i~q~~~~g~ 457 (546)
|=.+++-|-..++||++.|+-..+|++--.+.+=+|-+.++.+.+|++ ++-|. |..++..+-+--++.-..++|+
T Consensus 477 ylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~-Wq~~l~~lSvls~vtncaLi~~ 555 (647)
T KOG2513|consen 477 YLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGA-WQNALELLSVLSCVTNCALIGM 555 (647)
T ss_pred HHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHH-HHHHHHHHHHHHHHHhHHHHhc
Confidence 456777888899999999999999999999999999999999998765 45554 8887776655544444444444
Q ss_pred H
Q 009006 458 F 458 (546)
Q Consensus 458 f 458 (546)
.
T Consensus 556 ~ 556 (647)
T KOG2513|consen 556 Y 556 (647)
T ss_pred c
Confidence 3
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.28 E-value=0.00088 Score=69.55 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=35.9
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
..+++.||.|.|||.+++ +++|+++|+++ +.|++|.++.|..
T Consensus 103 ~~~~~~~LfVgnLp~~~t----e~~L~~lF~~~--G~V~~v~i~~d~~ 144 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMT----DRELYALFRTI--GPINTCRIMRDYK 144 (346)
T ss_pred CCCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecCC
Confidence 346789999999999987 79999999997 6699999988753
No 8
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.61 E-value=0.02 Score=51.77 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=31.3
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
-...+|.|.|||.+.+ +++|+++|+++ |.|.++.++.|
T Consensus 32 ~~~~~lfVgnL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d 69 (144)
T PLN03134 32 LMSTKLFIGGLSWGTD----DASLRDAFAHF--GDVVDAKVIVD 69 (144)
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEEec
Confidence 3456899999999886 79999999997 68888887643
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=96.43 E-value=0.022 Score=59.19 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=73.6
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 87 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 87 (546)
+.-+|+|+|||.+++ +++|+++|+++ |.|.+|.+++|-..
T Consensus 2 ~~~~l~V~nLp~~~~----e~~l~~~F~~~--G~i~~v~i~~d~~~---------------------------------- 41 (352)
T TIGR01661 2 SKTNLIVNYLPQTMT----QEEIRSLFTSI--GEIESCKLVRDKVT---------------------------------- 41 (352)
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHcc--CCEEEEEEEEcCCC----------------------------------
Confidence 356899999999987 79999999997 78999988754210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeec
Q 009006 88 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 165 (546)
Q Consensus 88 rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 165 (546)
.+..|.|||+|.+.++|..|...+... ....+.++.
T Consensus 42 ------------------------------------------g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 42 ------------------------------------------GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred ------------------------------------------CccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 123579999999999999999876543 233455555
Q ss_pred CC------CCCcceeccccchhHHHHHHHHHH
Q 009006 166 AP------ESRELIWNNLNIKFFQRQIRQYVV 191 (546)
Q Consensus 166 AP------eP~DI~W~Nl~~~~~~r~~R~~~~ 191 (546)
|- ....|.-.||..+..+..++.++.
T Consensus 80 a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 80 ARPSSDSIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred ecccccccccceEEECCccccCCHHHHHHHHh
Confidence 42 233577777777766666666543
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=96.42 E-value=0.01 Score=66.02 Aligned_cols=171 Identities=18% Similarity=0.201 Sum_probs=86.7
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHH------HHHHHHHHHHHHHHHHHHhhhcc-CCC
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKI------YEELEGYKKKLARAEAVYAESKS-AGK 83 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L------~~~r~~~~~~Le~~~~~~~~~k~-~~~ 83 (546)
||.|.|||.+++ +++|+++|+++ |.|.+|.+++|...-..+ ....+.+.+-++.........+. .-.
T Consensus 2 sl~VgnLp~~vt----e~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVT----EAKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 799999999987 79999999998 679999999885411000 12233333333322111000000 000
Q ss_pred CCCCCCcccc-c----ccCCCCccccHHHHHHHHHHHHhHH---HHHHHhhh-hccCCCceEEEEeCCHHHHHHHHHhcc
Q 009006 84 PEGTRPTIKT-G----FLGLLGKRVDAIEYYNEKIKEIIPK---LEAEQKIT-LKEKQLGAALVFFTSRVAAASAAQSLH 154 (546)
Q Consensus 84 ~~~~rP~~r~-g----~~~~~g~kvd~i~~~~~~l~~l~~~---I~~~~~~~-~~~~~~~~AFVtF~s~~~a~~a~q~~~ 154 (546)
.....|..+. + +.+-....+| ++.|.++-.+ |...+-.. ...+..|.|||.|.+.++|..|.+.+.
T Consensus 76 ~s~~~~~~~~~~~~~vfV~nLp~~~~-----~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 76 WSQRDPSLRRSGVGNIFVKNLDKSVD-----NKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred cccccccccccCCCceEEcCCCccCC-----HHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 0011122111 1 1111112222 1223332222 11111000 112457899999999999999998764
Q ss_pred cC--CCCceeee-----------cCCCCCcceeccccchhHHHHHHHHHHH
Q 009006 155 AQ--LVDTWTVS-----------DAPESRELIWNNLNIKFFQRQIRQYVVY 192 (546)
Q Consensus 155 ~~--~~~~~~v~-----------~APeP~DI~W~Nl~~~~~~r~~R~~~~~ 192 (546)
.. +...+.+. ..+....|.-.||..+..+..++.++.-
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~ 201 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK 201 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh
Confidence 32 11122221 2233455778888887777777765543
No 11
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.32 E-value=0.025 Score=55.56 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=30.0
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+||.|.|||.+.+ +++|++||+.+ |+|.+|.+.
T Consensus 4 ~rtVfVgNLs~~tT----E~dLrefFS~~--G~I~~V~I~ 37 (260)
T PLN03120 4 VRTVKVSNVSLKAT----ERDIKEFFSFS--GDIEYVEMQ 37 (260)
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 58999999999876 79999999987 889998775
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=96.29 E-value=0.014 Score=44.85 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=26.6
Q ss_pred EEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 12 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 12 V~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
|.|+|||.+++ +++|+++|+++ |.+..+.+..
T Consensus 1 l~v~nlp~~~t----~~~l~~~f~~~--g~i~~~~~~~ 32 (70)
T PF00076_consen 1 LYVGNLPPDVT----EEELRDFFSQF--GKIESIKVMR 32 (70)
T ss_dssp EEEESETTTSS----HHHHHHHHHTT--STEEEEEEEE
T ss_pred cEEcCCCCcCC----HHHHHHHHHHh--hhcccccccc
Confidence 68999999987 79999999996 6677776653
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.26 E-value=0.016 Score=59.64 Aligned_cols=135 Identities=17% Similarity=0.289 Sum_probs=73.4
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHH------HHHHHHHHHHHHHHHHHHHhhhcc
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANK------IYEELEGYKKKLARAEAVYAESKS 80 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~------L~~~r~~~~~~Le~~~~~~~~~k~ 80 (546)
.+.--+.|-.||+... +++|+++||++ |.|.+|.+.+|-..=.. ....|+++. ++...+...|.
T Consensus 32 ~~~vKlfVgqIprt~s----E~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~----~a~~Alhn~kt 101 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTAS----EKDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEAD----EAINALHNQKT 101 (510)
T ss_pred chhhhheeccCCcccc----HHHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHH----HHHHHhhcccc
Confidence 3344467889999876 79999999998 78999999987532100 001122221 11111111111
Q ss_pred C-----------CCCCCCCC-cccccccCCCCccccHHHHHHHHHHHHhHH---HHHHHh-hhhccCCCceEEEEeCCHH
Q 009006 81 A-----------GKPEGTRP-TIKTGFLGLLGKRVDAIEYYNEKIKEIIPK---LEAEQK-ITLKEKQLGAALVFFTSRV 144 (546)
Q Consensus 81 ~-----------~~~~~~rP-~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~---I~~~~~-~~~~~~~~~~AFVtF~s~~ 144 (546)
- .+.|++|- ..|.-|.|+..++.. +++++++-.+ |++.+- +.......|+|||+|.+.+
T Consensus 102 lpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t-----e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 102 LPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCT-----ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred cCCCCcceeecccchhhhccccchhhhhhhcccccc-----HHHHHHHHHhhCccchhhheecccccccceeEEEEehHH
Confidence 0 01112221 111113444444432 3455555443 232211 1112456899999999999
Q ss_pred HHHHHHHhcccC
Q 009006 145 AAASAAQSLHAQ 156 (546)
Q Consensus 145 ~a~~a~q~~~~~ 156 (546)
.|..|...++..
T Consensus 177 ~A~~Aika~ng~ 188 (510)
T KOG0144|consen 177 MAVAAIKALNGT 188 (510)
T ss_pred HHHHHHHhhccc
Confidence 999999888765
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=95.95 E-value=0.03 Score=61.75 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=34.6
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
.+..+|.|.|||.++. +++|++.|+++ |.|.++.+++|..
T Consensus 56 ~~~~~lFVgnLp~~~t----Ed~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLY----EDELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCCEEEeCCCCCCCC----HHHHHHHHHhh--CCEEEEEEEECCC
Confidence 4568999999999987 79999999997 7899999988843
No 15
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.76 E-value=0.066 Score=55.70 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=31.0
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..++|.|.|||.+.+ +++|+++|+.+ |.|.++.+++|
T Consensus 268 ~~~~lfV~NL~~~~~----e~~L~~~F~~f--G~v~~v~i~~d 304 (352)
T TIGR01661 268 AGYCIFVYNLSPDTD----ETVLWQLFGPF--GAVQNVKIIRD 304 (352)
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEeEc
Confidence 346799999998875 79999999987 77999988754
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=95.13 E-value=0.06 Score=51.55 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=26.3
Q ss_pred EEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 12 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 12 V~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
|.|-|+|.+.. ++.|++|||++ |+|++..++
T Consensus 15 ifVggL~w~T~----~~~l~~yFeqf--GeI~eavvi 45 (247)
T KOG0149|consen 15 IFVGGLAWETH----KETLRRYFEQF--GEIVEAVVI 45 (247)
T ss_pred EEEcCcccccc----hHHHHHHHHHh--CceEEEEEE
Confidence 88999999877 69999999998 777777665
No 17
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.07 E-value=0.048 Score=57.31 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
-...|-|.+++||.+.+ .++|.+||+.+ .|+++.+.++
T Consensus 7 ~~~~~~vr~rGLPwsat----~~ei~~Ff~~~---~I~~~~~~r~ 44 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSAT----EKEILDFFSNC---GIENLEIPRR 44 (510)
T ss_pred CCcceEEEecCCCcccc----HHHHHHHHhcC---ceeEEEEecc
Confidence 35678899999999987 79999999986 5777776665
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=94.96 E-value=0.096 Score=52.42 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=33.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
+-.+.-+.|+|||-..+| .+|+..|+++ |+|.+|.|++|
T Consensus 93 ~~~pkRLhVSNIPFrFRd----pDL~aMF~kf--G~VldVEIIfN 131 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRD----PDLRAMFEKF--GKVLDVEIIFN 131 (376)
T ss_pred CCCCceeEeecCCccccC----ccHHHHHHhh--CceeeEEEEec
Confidence 345567999999999995 8899999998 89999998865
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=94.51 E-value=0.26 Score=54.88 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
....+|.|+|+|.+.+ +++|+++|+++ |.|.++.+..|.
T Consensus 176 ~~~~~l~V~nl~~~~t----ee~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVN----EDKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred cCCCeEEEeCCCCcCC----HHHHHHHHHhc--CCEEEEEEEECC
Confidence 3445799999999886 79999999997 778888887663
No 20
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.16 Score=48.96 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=30.2
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..-||.|+|+|.+++ +.+|++.|..+ |.|.++.+++|
T Consensus 188 D~~tvRvtNLsed~~----E~dL~eLf~~f--g~i~rvylard 224 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMR----EDDLEELFRPF--GPITRVYLARD 224 (270)
T ss_pred ccceeEEecCccccC----hhHHHHHhhcc--CccceeEEEEc
Confidence 567899999999988 68888888887 56888888743
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=93.89 E-value=0.22 Score=55.09 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 170 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~ 170 (546)
..+.|||.|++.++|..|.+.+... ....++|..|..++
T Consensus 268 ~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 268 IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 3579999999999999999877654 34567788775443
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=93.29 E-value=0.46 Score=52.82 Aligned_cols=87 Identities=9% Similarity=0.096 Sum_probs=64.7
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 87 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 87 (546)
..++|.|.|||.++. +++|+++|+.+ |.|.++.+.+|-.
T Consensus 203 ~~~rLfVgnLp~~vt----eedLk~lFs~F--G~I~svrl~~D~~----------------------------------- 241 (612)
T TIGR01645 203 KFNRIYVASVHPDLS----ETDIKSVFEAF--GEIVKCQLARAPT----------------------------------- 241 (612)
T ss_pred ccceEEeecCCCCCC----HHHHHHHHhhc--CCeeEEEEEecCC-----------------------------------
Confidence 347999999999887 68999999986 7788887753211
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeec
Q 009006 88 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 165 (546)
Q Consensus 88 rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 165 (546)
..+..|.|||.|++.++|..|...+... +...++|..
T Consensus 242 -----------------------------------------tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 242 -----------------------------------------GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred -----------------------------------------CCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 0123589999999999999999877654 345677877
Q ss_pred CCCCCcceecc
Q 009006 166 APESRELIWNN 176 (546)
Q Consensus 166 APeP~DI~W~N 176 (546)
|..|-|=.|..
T Consensus 281 Ai~pP~~~~~p 291 (612)
T TIGR01645 281 CVTPPDALLQP 291 (612)
T ss_pred cCCCccccCCC
Confidence 76666666643
No 23
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=1.4 Score=49.69 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHhhHHHHHHHHHHH
Q 009006 239 EAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFI 291 (546)
Q Consensus 239 ~~~lP~lil~~~n~llp~il~~ls~~e~~~s~S~~~~s~~~k~f~f~~iN~~l 291 (546)
+..+-.+++.++|.+---+..+++..|.+.|.|+.|.|+.-|.|+||++|...
T Consensus 436 a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~ys 488 (861)
T KOG2514|consen 436 AVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYS 488 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcC
Confidence 33344455566677777788899999999999999999999999999999654
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=92.36 E-value=0.45 Score=51.39 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=31.0
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
..+||.|.|||.+++ +++|+++|+++ |.|.+|.++.
T Consensus 88 ~~~~l~V~nlp~~~~----~~~l~~~F~~~--G~v~~v~i~~ 123 (457)
T TIGR01622 88 DDRTVFVLQLALKAR----ERDLYEFFSKV--GKVRDVQCIK 123 (457)
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEee
Confidence 468999999999887 78999999997 6888888864
No 25
>PLN03121 nucleic acid binding protein; Provisional
Probab=92.14 E-value=0.24 Score=48.10 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
+.-|||.|+||+.+.+ +++|++||+.+ |+|.+|.+.+|
T Consensus 3 ~~g~TV~V~NLS~~tT----E~dLrefFS~~--G~I~~V~I~~D 40 (243)
T PLN03121 3 PGGYTAEVTNLSPKAT----EKDVYDFFSHC--GAIEHVEIIRS 40 (243)
T ss_pred CCceEEEEecCCCCCC----HHHHHHHHHhc--CCeEEEEEecC
Confidence 4569999999999887 79999999997 88999998844
No 26
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=91.98 E-value=0.84 Score=43.66 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=33.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccCC--CCceeeecCCCCCcceec
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 175 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~APeP~DI~W~ 175 (546)
+-.|.|||+|++..+|..|...++.-. ..-|++..|=+++||+=.
T Consensus 50 KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 50 KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 347899999999999988877665421 234667788888888755
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=91.62 E-value=0.55 Score=50.19 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=29.3
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.||.|+|+|-+.+ +++|+++|+++ |+|..+.+|
T Consensus 293 ~tVFvRNL~fD~t----EEel~~~fskF--G~v~ya~iV 325 (678)
T KOG0127|consen 293 KTVFVRNLPFDTT----EEELKEHFSKF--GEVKYAIIV 325 (678)
T ss_pred ceEEEecCCcccc----HHHHHHHHHhh--ccceeEEEE
Confidence 8999999999887 79999999998 778777776
No 28
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=91.58 E-value=0.29 Score=40.93 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=30.1
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
-|||++|||..++ .+.|.+.+++.++|++.=+.+-.|.
T Consensus 2 TTvMirNIPn~~t----~~~L~~~l~~~~~g~yDF~YLPiDf 39 (97)
T PF04059_consen 2 TTVMIRNIPNKYT----QEMLIQILDEHFKGKYDFFYLPIDF 39 (97)
T ss_pred eeEEEecCCCCCC----HHHHHHHHHHhccCcceEEEeeeec
Confidence 3999999999987 6889999988888876555555553
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=91.45 E-value=1.2 Score=48.90 Aligned_cols=35 Identities=9% Similarity=0.223 Sum_probs=29.3
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
+..+|.|.|||.+++ +++|+++|+++ |.|..+.++
T Consensus 294 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~~~~~ 328 (509)
T TIGR01642 294 SKDRIYIGNLPLYLG----EDQIKELLESF--GDLKAFNLI 328 (509)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEE
Confidence 357999999999887 79999999997 668777765
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=91.02 E-value=0.77 Score=47.98 Aligned_cols=135 Identities=24% Similarity=0.265 Sum_probs=75.1
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC-cchHH--------HHHHHHHHHHHHHHHHHHHHh
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN-NKEAN--------KIYEELEGYKKKLARAEAVYA 76 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d-~~~l~--------~L~~~r~~~~~~Le~~~~~~~ 76 (546)
.+.-.-|.|-+||.|+. +++|.-.|++. |++-++.+-.| .+.-. .--++-+++.+.|...
T Consensus 80 p~~G~EVfvGkIPrD~~----EdeLvplfEki--G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~----- 148 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVF----EDELVPLFEKI--GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY----- 148 (506)
T ss_pred CCCCceEEecCCCcccc----chhhHHHHHhc--cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc-----
Confidence 35567799999999987 68999999998 77777777666 11000 0011122222222211
Q ss_pred hhccCCCCCCCCCccccccc------CC-CC--ccccHHHHHHHHHHHHhHHHHHHHh----------hhhccCCCceEE
Q 009006 77 ESKSAGKPEGTRPTIKTGFL------GL-LG--KRVDAIEYYNEKIKEIIPKLEAEQK----------ITLKEKQLGAAL 137 (546)
Q Consensus 77 ~~k~~~~~~~~rP~~r~g~~------~~-~g--~kvd~i~~~~~~l~~l~~~I~~~~~----------~~~~~~~~~~AF 137 (546)
.-||....|+| .+ .| .|. +-+++| .+++++.-+ -..+.+..|-||
T Consensus 149 ---------Eir~GK~igvc~Svan~RLFiG~IPK~----k~keeI---lee~~kVteGVvdVivy~~p~dk~KNRGFaF 212 (506)
T KOG0117|consen 149 ---------EIRPGKLLGVCVSVANCRLFIGNIPKT----KKKEEI---LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAF 212 (506)
T ss_pred ---------cccCCCEeEEEEeeecceeEeccCCcc----ccHHHH---HHHHHhhCCCeeEEEEecCccccccccceEE
Confidence 23454445543 12 12 121 112222 222222110 012346799999
Q ss_pred EEeCCHHHHHHHHHhcccCCCCc----eeeecCC
Q 009006 138 VFFTSRVAAASAAQSLHAQLVDT----WTVSDAP 167 (546)
Q Consensus 138 VtF~s~~~a~~a~q~~~~~~~~~----~~v~~AP 167 (546)
|.+.|-++|..+.|.+.+.+-.- ..|..|-
T Consensus 213 veYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAe 246 (506)
T KOG0117|consen 213 VEYESHRAAAMARRKLMPGKIKLWGNAITVDWAE 246 (506)
T ss_pred EEeecchhHHHHHhhccCCceeecCCcceeeccC
Confidence 99999999999999987765433 3455553
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=90.77 E-value=1.4 Score=47.56 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=30.0
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
|...||.|.|||.+++ +++|+++|+++ |.|.+|.+.
T Consensus 184 p~~~~l~v~nl~~~~t----e~~l~~~f~~~--G~i~~v~~~ 219 (457)
T TIGR01622 184 PNFLKLYVGNLHFNIT----EQELRQIFEPF--GDIEDVQLH 219 (457)
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 4568999999999877 79999999986 678777665
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=90.18 E-value=0.53 Score=35.39 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=27.9
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
||.|+|+|.+.. +++|+++|+++ |.+.++.+..+
T Consensus 1 ~v~i~~l~~~~~----~~~l~~~~~~~--g~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVT----EEDLKELFSKF--GPIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCC----HHHHHHHHHhc--CCEEEEEEecC
Confidence 689999999876 68999999987 66777776644
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=90.12 E-value=1.1 Score=49.90 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=31.0
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..++|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 106 ~~~rLfVGnLp~~~t----Ee~Lr~lF~~f--G~I~sV~I~~D 142 (612)
T TIGR01645 106 IMCRVYVGSISFELR----EDTIRRAFDPF--GPIKSINMSWD 142 (612)
T ss_pred CCCEEEEcCCCCCCC----HHHHHHHHHcc--CCEEEEEEeec
Confidence 457899999999887 79999999997 67888877643
No 34
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=90.02 E-value=0.47 Score=36.54 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=25.6
Q ss_pred EEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 12 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 12 V~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
|+|+|||.+.+ +++|.++|+.+ |.|.++.+.
T Consensus 1 v~i~nlp~~~~----~~~l~~~f~~~--g~v~~v~~~ 31 (70)
T PF14259_consen 1 VYISNLPPSTT----EEDLRNFFSRF--GPVEKVRLI 31 (70)
T ss_dssp EEEESSTTT------HHHHHHHCTTS--SBEEEEEEE
T ss_pred CEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEE
Confidence 68999999876 79999999997 568888887
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=89.34 E-value=0.78 Score=44.96 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=66.1
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-CC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP-EG 86 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~-~~ 86 (546)
.-+|+.|-|+..+.+ ++-|...|+++ |.|.+..+++| ++....+ ..| ..
T Consensus 5 ~prtlyvgnld~~vt----e~~i~~lf~qi--g~v~~~k~i~~----------------e~~v~wa--------~~p~nQ 54 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVT----EDFIATLFNQI--GSVTKTKVIFD----------------ELKVNWA--------TAPGNQ 54 (321)
T ss_pred CCceEEeeccChhhH----HHHHHHHHHhc--cccccceeehh----------------hhccccc--------cCcccC
Confidence 458999999999887 67888999998 77888888887 1111111 111 12
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHhH---HHHHHH--hhhhccCCCceEEEEeCCHHHHHHHHHhc
Q 009006 87 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIP---KLEAEQ--KITLKEKQLGAALVFFTSRVAAASAAQSL 153 (546)
Q Consensus 87 ~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~---~I~~~~--~~~~~~~~~~~AFVtF~s~~~a~~a~q~~ 153 (546)
.+|+.+..+--+.|.-+..|+ .++|++--. +|.+.+ ++....+.-|++||+|-+.++|..|.|..
T Consensus 55 sk~t~~~hfhvfvgdls~eI~--~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 55 SKPTSNQHFHVFVGDLSPEID--NEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred CCCccccceeEEehhcchhcc--hHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 344444321111232222232 133333322 233322 11123467899999999999999988764
No 36
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=88.40 E-value=2.3 Score=41.48 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=78.4
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHH---------HHHHHHHHHHHHHHHHHHhhhccC
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKI---------YEELEGYKKKLARAEAVYAESKSA 81 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L---------~~~r~~~~~~Le~~~~~~~~~k~~ 81 (546)
-+.|.-+|++++ +++++..|..+ |+++++.+++|--.=..| -++-+++.+.|..+..+ +|.
T Consensus 43 NLIvNYLPQ~MT----qdE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KT- 112 (360)
T KOG0145|consen 43 NLIVNYLPQNMT----QDELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKT- 112 (360)
T ss_pred eeeeeecccccC----HHHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cce-
Confidence 356678899988 68999999987 899999999985221111 12333344444332211 110
Q ss_pred CCCCCCCCccc---ccccCCCC-ccccHHHHHHHHHHHHhHHHHHH-Hhhhh----ccCCCceEEEEeCCHHHHHHHHHh
Q 009006 82 GKPEGTRPTIK---TGFLGLLG-KRVDAIEYYNEKIKEIIPKLEAE-QKITL----KEKQLGAALVFFTSRVAAASAAQS 152 (546)
Q Consensus 82 ~~~~~~rP~~r---~g~~~~~g-~kvd~i~~~~~~l~~l~~~I~~~-~~~~~----~~~~~~~AFVtF~s~~~a~~a~q~ 152 (546)
-+-+-.||... -.-+-..| .|. --++|++.+-...-.. -.+.+ ..-..|.+||.|+....|..|...
T Consensus 113 IKVSyARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 113 IKVSYARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEEEeccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 01111244321 00000112 111 1234455444332221 11111 123578999999999999999999
Q ss_pred cccCCCCc----eeeecCCCC
Q 009006 153 LHAQLVDT----WTVSDAPES 169 (546)
Q Consensus 153 ~~~~~~~~----~~v~~APeP 169 (546)
+...+|.. ..|+-|-.|
T Consensus 189 lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCc
Confidence 88777654 345555555
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=86.88 E-value=2.9 Score=43.67 Aligned_cols=41 Identities=7% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
-+++..+++|.|+|||-+.+ =++||+.+++.- |+|..|.+.
T Consensus 38 gn~~~r~R~vfItNIpyd~r----WqdLKdLvrekv-Gev~yveLl 78 (608)
T KOG4212|consen 38 GNVAARDRSVFITNIPYDYR----WQDLKDLVREKV-GEVEYVELL 78 (608)
T ss_pred CCcccccceEEEecCcchhh----hHhHHHHHHHhc-CceEeeeee
Confidence 35677889999999999887 578888888764 566655443
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=86.15 E-value=1.1 Score=32.91 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.3
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ 156 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~ 156 (546)
.+.|||+|.+.++|..|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 599999999999999999987654
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=85.70 E-value=1.4 Score=33.08 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=27.6
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
+|+|+|+|.+.. +++++++|+.+ |.+.++.+..
T Consensus 1 ~i~i~~l~~~~~----~~~i~~~~~~~--g~i~~~~~~~ 33 (74)
T cd00590 1 TLFVGNLPPDVT----EEDLRELFSKF--GKVESVRIVR 33 (74)
T ss_pred CEEEeCCCCccC----HHHHHHHHHhc--CCEEEEEEee
Confidence 589999999876 79999999997 6788877764
No 40
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=85.52 E-value=8.4 Score=39.73 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccc
Q 009006 130 EKQLGAALVFFTSRVAAASAAQSLHA 155 (546)
Q Consensus 130 ~~~~~~AFVtF~s~~~a~~a~q~~~~ 155 (546)
..++|-|||.|++.++|..|+|..|.
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 45799999999999999999997654
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=84.42 E-value=0.95 Score=44.83 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=30.3
Q ss_pred EEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 12 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 12 V~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
+.|-|+|.+.+ +++|+..|+++ |+|.+.-++.|.+
T Consensus 5 LFIGNLp~~~~----~~elr~lFe~y--gkVlECDIvKNYg 39 (346)
T KOG0109|consen 5 LFIGNLPREAT----EQELRSLFEQY--GKVLECDIVKNYG 39 (346)
T ss_pred hhccCCCcccc----hHHHHHHHHhh--CceEeeeeecccc
Confidence 57889999876 69999999998 8999999888765
No 42
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=84.16 E-value=9.7 Score=32.72 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=41.7
Q ss_pred cCCCCCCcccc-----chHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeccCCc
Q 009006 371 WFPGDLGYGTR-----VPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAY 429 (546)
Q Consensus 371 ~~~~~f~~~~~-----y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~ 429 (546)
...++|+.+.. |+| .+.++|+.||+..|+ ++.+-+++.+++.|+.+++.++|+.
T Consensus 47 ~g~~eF~i~~nvL~liY~Q--tl~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQ--TLVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCCccHhhhHHHHHHcc--hhhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44567777654 455 357889999887777 6777888899999999999998763
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=82.10 E-value=1.9 Score=45.12 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=32.5
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
+....-+.|-|||++-. +++|.+-+++.-|| |++|.+-.+-.
T Consensus 161 Svan~RLFiG~IPK~k~----keeIlee~~kVteG-VvdVivy~~p~ 202 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKK----KEEILEEMKKVTEG-VVDVIVYPSPD 202 (506)
T ss_pred eeecceeEeccCCcccc----HHHHHHHHHhhCCC-eeEEEEecCcc
Confidence 45667789999999866 78888989998776 77886655444
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=82.00 E-value=10 Score=38.68 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHhhhh--------ccCCCceEEEEeCCHHHHHHHHHhcccC
Q 009006 113 IKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ 156 (546)
Q Consensus 113 l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 156 (546)
+.++++.+.+++.+.. ...+-|.+=|+|++...|..|.|.++..
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 6677777777776652 2457899999999999999999998654
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=80.68 E-value=7.1 Score=37.40 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.5
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhh
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAI 37 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~ 37 (546)
-+|+.|.|+|.|.. ..+|...|+..
T Consensus 34 VRTLFVSGLP~DvK----pREiynLFR~f 58 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVK----PREIYNLFRRF 58 (284)
T ss_pred cceeeeccCCcccC----HHHHHHHhccC
Confidence 48999999999987 68888888875
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=80.17 E-value=7.1 Score=41.81 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=30.2
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
++|.|.|||.+.. +++|.+.|.+. |.|.++.++||
T Consensus 19 ~~v~vgnip~~~s----e~~l~~~~~~~--g~v~s~~~v~D 53 (435)
T KOG0108|consen 19 SSVFVGNIPYEGS----EEQLLSIFSGV--GPVLSFRLVYD 53 (435)
T ss_pred cceEecCCCCccc----HHHHHHHHhcc--Cccceeeeccc
Confidence 9999999999887 79999999987 66888877755
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=77.09 E-value=3.4 Score=43.06 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..+.+|.|.|||.+++ +++|+++|+++ |.|+++.+.+|
T Consensus 191 ~~~~~lfV~nLp~~vt----ee~L~~~F~~f--G~V~~v~i~~d 228 (346)
T TIGR01659 191 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GQIVQKNILRD 228 (346)
T ss_pred cccceeEEeCCCCccc----HHHHHHHHHhc--CCEEEEEEeec
Confidence 3577899999999887 78999999987 77888888755
No 48
>smart00361 RRM_1 RNA recognition motif.
Probab=75.58 E-value=3.9 Score=31.71 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQ 156 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~ 156 (546)
..|.|||+|++..+|..|.+.++..
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4688999999999999999887654
No 49
>smart00360 RRM RNA recognition motif.
Probab=73.59 E-value=4.7 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=24.1
Q ss_pred EcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 14 VRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 14 V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
|+|+|.+.. +++|+++|+++ |.|.++.+..
T Consensus 1 i~~l~~~~~----~~~l~~~f~~~--g~v~~~~i~~ 30 (71)
T smart00360 1 VGNLPPDVT----EEELRELFSKF--GKIESVRLVR 30 (71)
T ss_pred CCCCCcccC----HHHHHHHHHhh--CCEeEEEEEe
Confidence 578998876 68999999987 6687777663
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=72.24 E-value=3.6 Score=31.41 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcc
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLH 154 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~ 154 (546)
...+.|||+|.|+.+|..|.+..+
T Consensus 37 ~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 37 QSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCHHHHHHHHHHCC
Confidence 358999999999999999998865
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=70.25 E-value=4 Score=37.66 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=28.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhcccCC--CCceeeec
Q 009006 130 EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 165 (546)
Q Consensus 130 ~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 165 (546)
..+-|.|||+|++..+|.-|...|...+ ...+.|+.
T Consensus 44 rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 44 RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred ecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 4678999999999999999999887665 44566654
No 52
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=70.05 E-value=6.5 Score=38.03 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=31.0
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
.+||.|.|||.+.+ +++|.++|.++ |.+.++.+.+|-
T Consensus 115 ~~~l~v~nL~~~~~----~~~l~~~F~~~--g~~~~~~~~~d~ 151 (306)
T COG0724 115 NNTLFVGNLPYDVT----EEDLRELFKKF--GPVKRVRLVRDR 151 (306)
T ss_pred CceEEEeCCCCCCC----HHHHHHHHHhc--CceeEEEeeecc
Confidence 59999999999887 79999999998 567777776553
No 53
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=68.84 E-value=18 Score=38.10 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=28.3
Q ss_pred EEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 12 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 12 V~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
|.|+|+|+++++ +.|.++|+.+ |.|.++.+..|
T Consensus 79 ~~i~nl~~~~~~----~~~~d~f~~~--g~ilS~kv~~~ 111 (369)
T KOG0123|consen 79 VFIKNLDESIDN----KSLYDTFSEF--GNILSCKVATD 111 (369)
T ss_pred eeecCCCcccCc----HHHHHHHHhh--cCeeEEEEEEc
Confidence 899999999885 8899999998 78999887744
No 54
>smart00360 RRM RNA recognition motif.
Probab=64.70 E-value=8.9 Score=28.17 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcc
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLH 154 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~ 154 (546)
...+.|||+|++..+|..|.+.++
T Consensus 36 ~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 36 KSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCceEEEEeCCHHHHHHHHHHcC
Confidence 447899999999999999988765
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=64.52 E-value=9.2 Score=41.74 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=31.4
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
+.||.|+|||.+.+ +++|++.|+++ |.|.++.++.+
T Consensus 2 s~vv~V~nLp~~~t----e~~L~~~f~~f--G~V~~v~i~~~ 37 (481)
T TIGR01649 2 SPVVHVRNLPQDVV----EADLVEALIPF--GPVSYVMMLPG 37 (481)
T ss_pred ccEEEEcCCCCCCC----HHHHHHHHHhc--CCeeEEEEECC
Confidence 57999999999987 79999999997 78999988754
No 56
>smart00362 RRM_2 RNA recognition motif.
Probab=63.41 E-value=9.5 Score=28.18 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccc
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHA 155 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~ 155 (546)
...+.|||+|++..+|..|.+.++.
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 3479999999999999999887653
No 57
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.13 E-value=4.2 Score=33.37 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 38 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~ 38 (546)
.+|.+||+++|||..+. ++.+++..+=.|
T Consensus 49 ~vs~rtVlvsgip~~l~----ee~l~D~LeIhF 77 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLD----EEELRDKLEIHF 77 (88)
T ss_pred cccCCEEEEeCCCCCCC----hhhheeeEEEEE
Confidence 57899999999999554 566666544333
No 58
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=59.01 E-value=18 Score=39.47 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=32.9
Q ss_pred CCcceEEEcCCCC-CCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 7 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 7 ~s~yTV~V~~IP~-~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
+...+|+|+|||. +++ +++|++.|+++ |.|.+|.+.+|-
T Consensus 273 ~~~~~l~v~nL~~~~vt----~~~L~~lF~~y--G~V~~vki~~~~ 312 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVN----CDRLFNLFCVY--GNVERVKFMKNK 312 (481)
T ss_pred CCCCEEEEeCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCC
Confidence 4667999999997 455 79999999997 789999988764
No 59
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=56.87 E-value=6.4 Score=44.20 Aligned_cols=43 Identities=7% Similarity=0.196 Sum_probs=36.1
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
.+...++|+.|.+||++++ +++|++.|+++ |+|.+|.++.+-+
T Consensus 416 ~isV~SrTLwvG~i~k~v~----e~dL~~~feef--GeiqSi~li~~R~ 458 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKNVT----EQDLANLFEEF--GEIQSIILIPPRG 458 (894)
T ss_pred ceeEeeeeeeeccccchhh----HHHHHHHHHhc--ccceeEeeccCCc
Confidence 3456789999999999988 79999999998 7888888776543
No 60
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=56.72 E-value=1.8e+02 Score=28.42 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=60.6
Q ss_pred CCHHHHHHhcCCCCCCccccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhe---eeccCCcCCccccHHH
Q 009006 362 KTEAELKEAWFPGDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQAL---KVYVPAYESYGRMWPH 438 (546)
Q Consensus 362 ~T~re~~~~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~l~y~v~Ky~ll---yvy~~~~esgG~~~~~ 438 (546)
++++++.|.++.+.. |. |+...+++.+.+-|+.++-+...-......+....-|...+ +..+|+.+.-|+.+..
T Consensus 86 ~~~er~LeIMKDsri--G~-~Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~f~~ 162 (235)
T PF02654_consen 86 RDRERRLEIMKDSRI--GA-FGVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGALFVG 162 (235)
T ss_pred CCHHHHHHHHhCCCC--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhHHhc
Confidence 344444566665443 32 46666666666666655544433233334444455565444 2234555555665533
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHhcccc
Q 009006 439 MF--LRLVAALLLYQITMLGYFGSKKFIYVGFLIPLPILSLIFVYICQKRFYK 489 (546)
Q Consensus 439 ~~--~~~~~~l~i~q~~~~g~f~lk~~~~~~~~~~l~i~t~~f~~~~~~~~~~ 489 (546)
-. +++..++++.-+..+.+.... .......+...+.+.++.++++++++=
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~lGG 214 (235)
T PF02654_consen 163 SAKKRQVLIALIILLLLALFLGGIP-WIGLLALLVALLLALLLARYARRRLGG 214 (235)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 344455544322222221111 111223344455677788888888763
No 61
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=56.57 E-value=15 Score=27.26 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQ 156 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~ 156 (546)
..+.|||+|++..+|+.|.+.++..
T Consensus 39 ~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 39 SKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC
Confidence 4789999999999999999876554
No 62
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=55.97 E-value=42 Score=28.10 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=16.0
Q ss_pred CCcCCccccHHHHHHHHHHHHHHH
Q 009006 427 PAYESYGRMWPHMFLRLVAALLLY 450 (546)
Q Consensus 427 ~~~esgG~~~~~~~~~~~~~l~i~ 450 (546)
|....+|+-||.+..-++.++.++
T Consensus 8 ~~~~~~g~sW~~LVGVv~~al~~S 31 (102)
T PF15176_consen 8 PGPGEGGRSWPFLVGVVVTALVTS 31 (102)
T ss_pred CCCCCCCcccHhHHHHHHHHHHHH
Confidence 455678999997665555555443
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=52.20 E-value=29 Score=34.21 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=38.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccCCC-----CceeeecCCCCCcceeccccchhHHHHHHHHHHH
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQLV-----DTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVY 192 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~-----~~~~v~~APeP~DI~W~Nl~~~~~~r~~R~~~~~ 192 (546)
...|+|||-|++..+|+.|...+|.++. ..+.|+.| -+.++|..||.--.
T Consensus 58 ~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQm 112 (371)
T KOG0146|consen 58 NSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQM 112 (371)
T ss_pred CCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHHH
Confidence 4579999999999999999999998753 24556554 35678888886443
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=51.67 E-value=63 Score=30.25 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.+-+|-||.|.|||...+ ++.|.+.|-+. |.|+++++.+|
T Consensus 5 ~rnqd~tiyvgnld~kvs----~~~l~EL~iqa--gpVv~i~iPkD 44 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVS----EELLYELFIQA--GPVVNLHIPKD 44 (203)
T ss_pred ccCCCceEEEecCCHHHH----HHHHHHHHHhc--Cceeeeecchh
Confidence 457899999999998887 68899999887 55888887765
No 65
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=49.57 E-value=22 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=24.2
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+|-|+|.|.+. .+.+.+||.++ |++.++.+.
T Consensus 2 ~wI~V~Gf~~~~-----~~~vl~~F~~f--GeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDL-----AEEVLEHFASF--GEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchH-----HHHHHHHHHhc--CCEEEEEcC
Confidence 589999999875 46778899986 667665544
No 66
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=48.84 E-value=1.2e+02 Score=32.31 Aligned_cols=83 Identities=19% Similarity=0.404 Sum_probs=47.2
Q ss_pred CCCceEEEEEe-cCcchH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHH
Q 009006 38 YPDTFYRSMVV-TNNKEA-NKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKE 115 (546)
Q Consensus 38 ~p~~v~~v~~~-~d~~~l-~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~ 115 (546)
||+. ....++ +|.++. ..+.++++++..+++.+..++.+. | ++...+.-++++++.
T Consensus 227 f~d~-a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~----------~-----------k~~~k~~~~~~q~~~ 284 (406)
T PF02388_consen 227 FGDK-AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKN----------P-----------KKKNKLKELEEQLAS 284 (406)
T ss_dssp CCCC-EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------T-----------HHHHHHHHHHHHHHH
T ss_pred cCCC-eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------c-----------chhhHHHHHHHHHHH
Confidence 4666 344444 577654 677777888888888877765532 1 011123446677777
Q ss_pred HhHHHHHHHhhh---hcc-CCCceEEEEeCC
Q 009006 116 IIPKLEAEQKIT---LKE-KQLGAALVFFTS 142 (546)
Q Consensus 116 l~~~I~~~~~~~---~~~-~~~~~AFVtF~s 142 (546)
++++|++.++-. .+. .-++.-||.+.+
T Consensus 285 ~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 285 LEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 777777655422 111 225556777654
No 67
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=46.58 E-value=29 Score=32.38 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=29.8
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.+-|+|-|+|+++|++-. =++||+|+.+. |.|.-..+-+|
T Consensus 111 srrSe~RVvVsGLp~SgS----WQDLKDHmRea--GdvCfadv~rD 150 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGS----WQDLKDHMREA--GDVCFADVQRD 150 (241)
T ss_pred ccccceeEEEecCCCCCc----hHHHHHHHHhh--CCeeeeeeecc
Confidence 356899999999998765 58899999986 44544444444
No 68
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=45.90 E-value=1.1e+02 Score=30.99 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhheeeccCCcCCcc---ccHHHHHHHHHHHHHHHHHHHHHHHh
Q 009006 399 APLIIPFGVVYFALGWLILRNQALKVYVPAYESYG---RMWPHMFLRLVAALLLYQITMLGYFG 459 (546)
Q Consensus 399 ~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~esgG---~~~~~~~~~~~~~l~i~q~~~~g~f~ 459 (546)
.|..+++|+++.++-+.+||+-+.-+..... +.. ..+|+++--+++|+++++....-+|.
T Consensus 45 ~~~ai~~glvwgl~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 45 VWAAIPFGLVWGLVIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999986654322 111 35566666666777777776665653
No 69
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=44.71 E-value=62 Score=35.53 Aligned_cols=24 Identities=13% Similarity=0.436 Sum_probs=19.8
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHH
Q 009006 101 KRVDAIEYYNEKIKEIIPKLEAEQ 124 (546)
Q Consensus 101 ~kvd~i~~~~~~l~~l~~~I~~~~ 124 (546)
+|-|..+|....+++|+++++..+
T Consensus 119 ek~d~~~wi~~~ideLe~q~d~~e 142 (575)
T KOG2150|consen 119 EKRDTMDWISNQIDELERQVDSFE 142 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999987643
No 70
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=44.66 E-value=24 Score=32.95 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=27.2
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEE
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 46 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~ 46 (546)
.+.+|.|-|+|.+++ +.++++.|.++ |.|.+|.
T Consensus 5 ~~~~iyvGNLP~diR----ekeieDlFyKy--g~i~~ie 37 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIR----EKEIEDLFYKY--GRIREIE 37 (241)
T ss_pred ccceEEecCCCcchh----hccHHHHHhhh--cceEEEE
Confidence 578999999999999 58899999998 5555554
No 71
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=43.82 E-value=1.8e+02 Score=26.60 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=22.9
Q ss_pred ecCCCCCcc-eeccccchhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009006 164 SDAPESREL-IWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIG 207 (546)
Q Consensus 164 ~~APeP~DI-~W~Nl~~~~~~r~~R~~~~~~~~~~l~if~~iPv~ 207 (546)
..+|+|+|. .|.|=-++----+--+.++.+++...+..+.-|.-
T Consensus 32 fa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~ 76 (188)
T KOG4050|consen 32 FARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQD 76 (188)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHH
Confidence 467999998 67775444332222333444444443334444443
No 72
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=43.71 E-value=40 Score=36.79 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.4
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhh
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 37 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~ 37 (546)
..+...+||.|.|||.+++ +++|+++|.++
T Consensus 170 ~~~~~~r~lyVgnLp~~~t----~~~l~~~F~~~ 199 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFV----EEAVVDFFNDL 199 (509)
T ss_pred cCCccccEEEEeCCCCCCC----HHHHHHHHHHH
Confidence 3455789999999999887 78999999985
No 73
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.76 E-value=3.6e+02 Score=26.64 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHhh
Q 009006 102 RVDAIEYYNEKIKEIIPKLEAEQKI 126 (546)
Q Consensus 102 kvd~i~~~~~~l~~l~~~I~~~~~~ 126 (546)
+++.+--.+++|.+.+.+|+..+.+
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445678888888888876543
No 74
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.81 E-value=2.5e+02 Score=26.67 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHhccc
Q 009006 468 FLIPLPILSLIFVYICQKRFY 488 (546)
Q Consensus 468 ~~~~l~i~t~~f~~~~~~~~~ 488 (546)
..+.+-++++...+|.++||.
T Consensus 182 ~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 182 VYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334444556677788888875
No 75
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=39.65 E-value=3.4e+02 Score=29.38 Aligned_cols=112 Identities=22% Similarity=0.255 Sum_probs=59.9
Q ss_pred HhCCCchhHHHH---HHHHHHhhhhhHHhhhHHHHHHHHHHHhhccCCHHHHHHhcCCCCCCccccchHHHHHHHHHHHh
Q 009006 319 NSLPGNATFFLT---YVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAWFPGDLGYGTRVPSDMLIVTIVFCY 395 (546)
Q Consensus 319 ~~lp~~s~fFi~---yii~~~~~~~~~~llr~~~l~~~~~~~~~~~~T~re~~~~~~~~~f~~~~~y~~~l~~~~i~l~Y 395 (546)
-|+|+ +.+..+ .+.+..+.+.++++.=+...++..+.+|+. +.|++ + .+|+.++...+.+..++..=
T Consensus 312 LNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~--~~~~~---~----~~~~~R~~lVllt~~iA~~i 381 (449)
T KOG1304|consen 312 LNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFS--ENRKK---L----LEYALRVFLVLLTFLIAVAV 381 (449)
T ss_pred ecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcC--cchhH---H----HHHHHHHHHHHHHHHHHHHC
Confidence 46787 433322 222444555666665555666666666643 22211 1 24556666666666666664
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh--heeeccCCcCCccccHHHHHHH
Q 009006 396 SCIAPLIIPFGVVYFALGWLILRNQ--ALKVYVPAYESYGRMWPHMFLR 442 (546)
Q Consensus 396 s~i~Plil~~~~~yf~l~y~v~Ky~--llyvy~~~~esgG~~~~~~~~~ 442 (546)
--+.++|..+|.+.....-+++==. ++..|...+ |...|....+-
T Consensus 382 PnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~--~~~~~~~~~ni 428 (449)
T KOG1304|consen 382 PNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK--GRFMWKLIKNI 428 (449)
T ss_pred CcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc--CceehHHHHHH
Confidence 4567788888887777665554322 222222111 34577766663
No 76
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=37.26 E-value=83 Score=24.03 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=29.5
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhC----CCceE-----EEEEecCcch
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY----PDTFY-----RSMVVTNNKE 53 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~----p~~v~-----~v~~~~d~~~ 53 (546)
...+|.|+|+.. +. .+++++||.+++ |..|+ ++++++.-.+
T Consensus 4 rpeavhirGvd~-ls----T~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~ 53 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LS----TDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEE 53 (62)
T ss_pred eeceEEEEcCCC-CC----HHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHH
Confidence 446799999863 55 588999999994 55555 5677876543
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=36.52 E-value=53 Score=35.27 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=33.8
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
.+-.+|.|-||+.+.+ +++|++.|.++ |+|.+|.++++.
T Consensus 8 ~~gMRIYVGNLSydVT----EDDLravFSeF--GsVkdVEIpRET 46 (759)
T PLN03213 8 GGGVRLHVGGLGESVG----RDDLLKIFSPM--GTVDAVEFVRTK 46 (759)
T ss_pred CcceEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEeccc
Confidence 4568999999999987 69999999998 889999988643
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=35.99 E-value=62 Score=30.09 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=33.9
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
+.+.-|.|-|+|.+.+ +.+|+.-|..+ |.+.+||++++..
T Consensus 8 ~~~~kVYVGnL~~~a~----k~eLE~~F~~y--G~lrsvWvArnPP 47 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRAT----KRELERAFSKY--GPLRSVWVARNPP 47 (195)
T ss_pred CCCceEEeccCCCCcc----hHHHHHHHHhc--CcceeEEEeecCC
Confidence 4567899999999887 78999999998 6789999998654
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=35.75 E-value=43 Score=34.29 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=33.5
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchH
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEA 54 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l 54 (546)
-..|.|.+||.++. ++++++||+++ +.|.++.+.+|.+..
T Consensus 97 tkkiFvGG~~~~~~----e~~~r~yfe~~--g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTT----EEDFKDYFEQF--GKVADVVIMYDKTTS 136 (311)
T ss_pred eeEEEecCcCCCCc----hHHHhhhhhcc--ceeEeeEEeeccccc
Confidence 34789999999987 79999999997 688889888887643
No 80
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=35.64 E-value=3.6e+02 Score=28.34 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=40.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 009006 238 LEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGG 297 (546)
Q Consensus 238 i~~~lP~lil~~~n~llp~il~~ls~~e~~~s~S~~~~s~~~k~f~f~~iN~~lv~~l~~ 297 (546)
+..+..+++-.++..++-.+.-++++.+|.......+.....+.--.-+-+.++..++.|
T Consensus 205 l~A~~~Ti~~~~ls~il~~~~i~~~~l~G~~~E~~~~l~~~~~~v~i~~~~~~~~~viIg 264 (385)
T COG5438 205 LAAFIGTILGTLLSIILAYISIYMTNLSGFGDEDLDELTYLSKNVGINFSGLFLAGVIIG 264 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhHHHhcCCcccCcchhhhHHHHHHHH
Confidence 334445566666667788888899999999888888877777764444444555444443
No 81
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.26 E-value=50 Score=31.13 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=27.0
Q ss_pred CccccchHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q 009006 377 GYGTRVPSDMLIVTIVFCYSCI-APLIIPFGVVYFALGWLILRNQ 420 (546)
Q Consensus 377 ~~~~~y~~~l~~~~i~l~Ys~i-~Plil~~~~~yf~l~y~v~Ky~ 420 (546)
|+.+.-.+...++.+.+.|+.+ .|+.+.+-...++..++.|++.
T Consensus 65 Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY~~r 109 (187)
T KOG3142|consen 65 NLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLYFLR 109 (187)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHheeeec
Confidence 3333334555667777777766 5777776666666666555544
No 82
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=35.07 E-value=72 Score=26.05 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccCC--CCceeeecCCCCCcc
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESREL 172 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~APeP~DI 172 (546)
..++|.|-|.++..|..|..-..... .....+...|.+.|.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 47899999999999999987665443 345667777776664
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=34.86 E-value=47 Score=33.44 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=31.5
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
-.|++|.-|+-+.. +..|++.|+.+ |.|.++.+|+|
T Consensus 101 y~TLFv~RLnydT~----EskLrreF~~Y--G~IkrirlV~d 136 (335)
T KOG0113|consen 101 YKTLFVARLNYDTS----ESKLRREFEKY--GPIKRIRLVRD 136 (335)
T ss_pred cceeeeeecccccc----HHHHHHHHHhc--CcceeEEEeee
Confidence 36899999998766 78999999998 67999999998
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=33.85 E-value=68 Score=31.49 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=17.6
Q ss_pred CCCceEEEEeCCHHHHHHHHH
Q 009006 131 KQLGAALVFFTSRVAAASAAQ 151 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q 151 (546)
+..+.|||+|+++.++..|.-
T Consensus 42 et~gfAfVtF~d~~aaetAll 62 (243)
T PLN03121 42 EYACTAYVTFKDAYALETAVL 62 (243)
T ss_pred CcceEEEEEECCHHHHHHHHh
Confidence 345799999999999988873
No 85
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=33.07 E-value=64 Score=27.38 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=26.9
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
+-+.|+|+|.+.+ .++.-+.|.++ |.|..|.+.-
T Consensus 19 riLyirNLp~~IT----seemydlFGky--g~IrQIRiG~ 52 (124)
T KOG0114|consen 19 RILYIRNLPFKIT----SEEMYDLFGKY--GTIRQIRIGN 52 (124)
T ss_pred eeEEEecCCcccc----HHHHHHHhhcc--cceEEEEecC
Confidence 4578999999998 58888999998 6677776653
No 86
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=33.03 E-value=3.9e+02 Score=24.63 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhheeeccCCcCCccccHHH---------HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHH
Q 009006 409 YFALGWLILRNQALKVYVPAYESYGRMWPH---------MFLRLVAALLLYQITMLGYFGSKKFIYVGFLIPLPI 474 (546)
Q Consensus 409 yf~l~y~v~Ky~llyvy~~~~esgG~~~~~---------~~~~~~~~l~i~q~~~~g~f~lk~~~~~~~~~~l~i 474 (546)
.+.+.+++--|.+-+.-+|.|+.+|.+-.. +..++.--+++.=++.++...-..+|...+++|+-.
T Consensus 53 ~~~~~~~~~~~~l~~~~rp~~~~~g~Lv~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~l~LvIP~ya 127 (170)
T PF05620_consen 53 LFSLPAIFCYYFLEKMARPKYDETGELVDAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWWLYLVIPGYA 127 (170)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCCCCeecCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445666678888855543222 355555556665555555444333344445555433
No 87
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=32.03 E-value=55 Score=30.75 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHhcccccccccchHHHhh
Q 009006 441 LRLVAALLLYQITMLGYFGSKKFIYVGFLIPLPILSLIFVYICQKRFYKSFSDTALEVASR 501 (546)
Q Consensus 441 ~~~~~~l~i~q~~~~g~f~lk~~~~~~~~~~l~i~t~~f~~~~~~~~~~~~~~~pl~~~~~ 501 (546)
-..++|+++|-..+-|+|..|+-++-.+++.+..++++-=.+.-.+..|+.+..|.....+
T Consensus 7 ~~a~~~~l~F~aatqg~f~~r~~~~E~~~ll~~~f~lf~P~~~~d~i~ppy~~~p~~~~~~ 67 (183)
T PF11874_consen 7 VTALIAMLAFAAATQGWFLTRNKWWESVLLLLIAFTLFRPGFWMDMIYPPYEEVPPSELVQ 67 (183)
T ss_pred HHHHHHHHHHHHHhcceeeecchHHHHHHHHHHHHHHhCchHHHHhccCccccCCHHHHHH
Confidence 3456788888888899998888776665666666777766777778888998888776553
No 88
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=30.60 E-value=49 Score=31.50 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHhc
Q 009006 131 KQLGAALVFFTSRVAAASAAQSL 153 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~ 153 (546)
+.-|+|||.|++..-|.+|+.+.
T Consensus 90 NSKgYAFVEFEs~eVA~IaAETM 112 (214)
T KOG4208|consen 90 NSKGYAFVEFESEEVAKIAAETM 112 (214)
T ss_pred CcCceEEEEeccHHHHHHHHHHh
Confidence 45789999999999999998764
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=30.42 E-value=49 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccc
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHA 155 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~ 155 (546)
...|+|||..++..+|..|+..+..
T Consensus 55 ~TrGTAFVVYedi~dAk~A~dhlsg 79 (124)
T KOG0114|consen 55 ETRGTAFVVYEDIFDAKKACDHLSG 79 (124)
T ss_pred CcCceEEEEehHhhhHHHHHHHhcc
Confidence 4589999999999999999887643
No 90
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=28.84 E-value=2.8e+02 Score=26.40 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=50.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhheeeccCCcCCccccHHHHHHHHHHHHHHHH-HHHHHHHhhccc---cc-hh
Q 009006 393 FCYSCIAPLIIPFGVVYFALGWLILRNQALKVYVPAYESYGRMWPHMFLRLVAALLLYQ-ITMLGYFGSKKF---IY-VG 467 (546)
Q Consensus 393 l~Ys~i~Plil~~~~~yf~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q-~~~~g~f~lk~~---~~-~~ 467 (546)
.++..-.|+.++.+++||+...++-+.+.=+.++. | +.+....|+-+.- ++..|...+++. .. ..
T Consensus 50 ~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~--e--------pYR~FY~~Isli~~l~~~gyvlvr~~s~~~~~y~ 119 (206)
T PF09874_consen 50 YVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF--E--------PYRFFYYGISLIGFLSFLGYVLVRRFSFEVYPYY 119 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech--h--------HHHHHHHHHhhhhheeecchhhheeccchhhhHH
Confidence 34444566777777888887666655554444422 1 2333333333322 233444445543 12 22
Q ss_pred h-hHHHHHHHHHHHHHHHhcccccccccch
Q 009006 468 F-LIPLPILSLIFVYICQKRFYKSFSDTAL 496 (546)
Q Consensus 468 ~-~~~l~i~t~~f~~~~~~~~~~~~~~~pl 496 (546)
. ++...++.+.|.++.+.||.|..-+--.
T Consensus 120 ~yL~~v~laVl~fr~~Fr~ky~RdyTyG~V 149 (206)
T PF09874_consen 120 TYLGFVFLAVLAFRYYFRSKYGRDYTYGVV 149 (206)
T ss_pred HHHHHHHHHHHHHhhheeeeecccceeEEE
Confidence 2 2222335677889999999998766544
No 91
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=28.76 E-value=1.9e+02 Score=25.87 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhh
Q 009006 385 DMLIVTIVFCYSCI-APLIIPFGVVYFALGWLILRNQ 420 (546)
Q Consensus 385 ~l~~~~i~l~Ys~i-~Plil~~~~~yf~l~y~v~Ky~ 420 (546)
...++++.++++.+ .|..++..++.....+++++..
T Consensus 44 Y~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~ 80 (153)
T PF03208_consen 44 YLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSR 80 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344444444443 5877766666666655555543
No 92
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=28.74 E-value=73 Score=33.74 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHH------HHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC
Q 009006 109 YNEKIKEIIPKLEA------EQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ 156 (546)
Q Consensus 109 ~~~~l~~l~~~I~~------~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 156 (546)
-+++++++-++.-. .+.+. .....|++||+|.+.++|..|...+|..
T Consensus 47 sE~dlr~lFe~yg~V~einl~kDk~-t~~s~gcCFv~~~trk~a~~a~~Alhn~ 99 (510)
T KOG0144|consen 47 SEKDLRELFEKYGNVYEINLIKDKS-TGQSKGCCFVKYYTRKEADEAINALHNQ 99 (510)
T ss_pred cHHHHHHHHHHhCceeEEEeecccc-cCcccceEEEEeccHHHHHHHHHHhhcc
Confidence 35566666554321 12221 2346899999999999999999888764
No 93
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=27.36 E-value=1.7e+02 Score=30.73 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHhhhe
Q 009006 387 LIVTIVFCYSCIAPLIIPFGVVYFALGWL-ILRNQAL 422 (546)
Q Consensus 387 ~~~~i~l~Ys~i~Plil~~~~~yf~l~y~-v~Ky~ll 422 (546)
-+.++|+++..++|+++.+-++|+++.|. .+|.+--
T Consensus 120 Rf~~~gi~nlll~Pfi~i~~il~~ff~y~e~~~~~P~ 156 (370)
T PF04109_consen 120 RFRLAGILNLLLSPFILIYQILYFFFKYAEEFKKNPG 156 (370)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhChH
Confidence 36788999999999999999999999988 4444333
No 94
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.94 E-value=88 Score=24.33 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=26.6
Q ss_pred ceEEEEeCCHHHHHHHHHhcccCCCCceeeecCCCCCcc
Q 009006 134 GAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESREL 172 (546)
Q Consensus 134 ~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~APeP~DI 172 (546)
....|||+|..+|-.+-+.+...+ +.++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g---i~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG---IPVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC---CcEEEeCCChhc
Confidence 467899999999988887765543 345566777776
No 95
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=26.05 E-value=6.9e+02 Score=25.14 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-chhhh---hhhcccch------hhhcchhHHHHHHHHhHHHHHHHH
Q 009006 181 FFQRQIRQYVVYVIVALTIMFYMIPIGLISALT-TLDNL---KKILPFLK------PVINITALKTVLEAYLPQIALIVF 250 (546)
Q Consensus 181 ~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~-~~~~l---~~~~p~l~------~~~~~~~~~~~i~~~lP~lil~~~ 250 (546)
+.++.+|..+.....+.+.+.+..|+-.+.+.+ +..+. ++.+|... ++...+ -....+.+.-+++++.+
T Consensus 6 k~~~~l~~~l~yl~lii~~~iiifPl~~~v~~Sf~~gn~~~~s~liP~~~t~~~y~~lf~~~-~~~y~~W~~Nsliva~~ 84 (282)
T COG3833 6 KKKRKLRLLLTYLLLIILAIIIIFPLLWVVLTSFRPGNSATGSSLIPKNITLDNYKLLFTGP-PFPYLLWLWNSLIVALI 84 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhhCCCcccHHHHHHHHcCC-CcHHHHHHHHHHHHHHH
Confidence 347788888888888888888899975543321 12222 22333211 111110 01223445556666666
Q ss_pred HHHHHHHHHHHH
Q 009006 251 LALLPKLLLFLS 262 (546)
Q Consensus 251 n~llp~il~~ls 262 (546)
..++...+--++
T Consensus 85 t~~i~v~~~~~~ 96 (282)
T COG3833 85 TAAITVALVTLA 96 (282)
T ss_pred HHHHHHHHHHHH
Confidence 666655555554
No 96
>COG0368 CobS Cobalamin-5-phosphate synthase [Coenzyme metabolism]
Probab=25.93 E-value=6.5e+02 Score=24.84 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=57.1
Q ss_pred CHHHHHHhcCCCCCCccccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhe--ee-ccCCcCCccccHHHH
Q 009006 363 TEAELKEAWFPGDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQAL--KV-YVPAYESYGRMWPHM 439 (546)
Q Consensus 363 T~re~~~~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~l~y~v~Ky~ll--yv-y~~~~esgG~~~~~~ 439 (546)
+++++.|.++.+. .|. ++....++.+.+-+..++=+..-.....+.+.-+.-|...+ .. .+|++...|.+....
T Consensus 91 ~~er~leiMkDsr--vG~-~Gv~ali~vlll~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 167 (246)
T COG0368 91 SRERKLEIMKDSR--VGA-GGVAALILVLLLKVLALASLLDLGAAALLALAEVLAKSRMLLVALLSKPPYAGLGGLGKEF 167 (246)
T ss_pred CHHHHHHHHhCCC--cCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHH
Confidence 4444456665433 332 46666666666666665544431222223333333333333 22 346777666666555
Q ss_pred HHHHHHHHHHHHHHHHH----HHhhccccchhhhHHHHHHHHHHHHHHHhcccc
Q 009006 440 FLRLVAALLLYQITMLG----YFGSKKFIYVGFLIPLPILSLIFVYICQKRFYK 489 (546)
Q Consensus 440 ~~~~~~~l~i~q~~~~g----~f~lk~~~~~~~~~~l~i~t~~f~~~~~~~~~~ 489 (546)
.+..-....+......+ .|.. .....++...++..++..+|.+++.=
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~l~~~~~~~~~~r~~GG 218 (246)
T COG0368 168 ADPRKGLIGALLLLVLLLLALLFGL---SGAIAVAVALLAAALLGRLAKRRFGG 218 (246)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 43322222222222211 1222 12224444556677888888888874
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=25.79 E-value=85 Score=27.92 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
+.+..-+-|+|+||-.+.+ ++++.+-|..+ |.|.++++..|-
T Consensus 67 qrSVEGwIi~VtgvHeEat----Eedi~d~F~dy--GeiKNihLNLDR 108 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEAT----EEDIHDKFADY--GEIKNIHLNLDR 108 (170)
T ss_pred ccceeeEEEEEeccCcchh----HHHHHHHHhhc--ccccceeecccc
Confidence 3445567899999988776 78999999998 778888887654
No 98
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=25.30 E-value=99 Score=30.48 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
......+|.|.|+|..+. +++|++.|++. +.+..|.+-||-
T Consensus 79 ~~~~~~~v~v~NL~~~V~----~~Dl~eLF~~~--~~~~r~~vhy~~ 119 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVI----DADLKELFAEF--GELKRVAVHYDR 119 (243)
T ss_pred cCCCcceeeeecCCcCcc----hHHHHHHHHHh--ccceEEeeccCC
Confidence 344557899999999887 58899999997 356677776653
No 99
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=24.57 E-value=67 Score=29.56 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhee
Q 009006 401 LIIPFGVVYFALGWLILRNQALK 423 (546)
Q Consensus 401 lil~~~~~yf~l~y~v~Ky~lly 423 (546)
..+++|++||++.|++.|+.+.+
T Consensus 11 ~~i~iGl~~f~iYyfvF~flI~k 33 (161)
T PRK09702 11 TQIAIGLCFTLLYFVVFRTLILQ 33 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
No 100
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=24.55 E-value=66 Score=25.37 Aligned_cols=26 Identities=31% Similarity=0.738 Sum_probs=23.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHh
Q 009006 394 CYSCIAPLIIPFGVVYFALGWLILRN 419 (546)
Q Consensus 394 ~Ys~i~Plil~~~~~yf~l~y~v~Ky 419 (546)
-|+.+.|+.+|...++-...+...|+
T Consensus 43 yY~lLvPl~iPv~~~~vy~nWls~k~ 68 (72)
T PF15159_consen 43 YYCLLVPLTIPVTIVFVYFNWLSWKF 68 (72)
T ss_pred ceeeehhhhhhHHHHHHHHHHHhHHH
Confidence 58899999999999999999998886
No 101
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.51 E-value=1.2e+02 Score=27.41 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHH
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLA 69 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le 69 (546)
||--+|+--++.|-.+.+.++.+.+++|+|+ ..+.+|.|..+-+.+.+.|+++-+-+.
T Consensus 55 tVtykN~kfNvwdvGGqd~iRplWrhYy~gt-qglIFV~Dsa~~dr~eeAr~ELh~ii~ 112 (180)
T KOG0071|consen 55 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT-QGLIFVVDSADRDRIEEARNELHRIIN 112 (180)
T ss_pred EEEeeeeEEeeeeccCchhhhHHHHhhccCC-ceEEEEEeccchhhHHHHHHHHHHHhC
Confidence 4555566544444445889999999999985 567788887776777777766654443
No 102
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=24.38 E-value=2e+02 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHH
Q 009006 105 AIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRV 144 (546)
Q Consensus 105 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~ 144 (546)
.++..+++++.++++|...|++..+-+.+..|.+.|.+.+
T Consensus 44 Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs~ak 83 (297)
T PF11945_consen 44 RVERNRERLQAIQQRIEVAQAKIEKLQGSKKAITVFSPAK 83 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccEEEeCccc
Confidence 3666778888888888887777655566788888887753
No 103
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=24.37 E-value=83 Score=26.33 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ 156 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 156 (546)
...|.|||-|.+.++|....+..+..
T Consensus 43 ~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 43 CNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 35899999999999999888877644
No 104
>PRK11020 hypothetical protein; Provisional
Probab=24.26 E-value=2.9e+02 Score=23.75 Aligned_cols=20 Identities=0% Similarity=0.120 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHHHHHHHh
Q 009006 106 IEYYNEKIKEIIPKLEAEQK 125 (546)
Q Consensus 106 i~~~~~~l~~l~~~I~~~~~ 125 (546)
+..++++++.++.+|+..+.
T Consensus 33 i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 33 YAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55567777888887776543
No 105
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=23.99 E-value=76 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
-++.||.|.||.--.+ +++|.+.|.+. |.|.+|.+..|-
T Consensus 34 r~S~tvyVgNlSfytt----EEqiyELFs~c--G~irriiMGLdr 72 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTT----EEQIYELFSKC--GDIRRIIMGLDR 72 (153)
T ss_pred hhcceEEEeeeeeeec----HHHHHHHHHhc--cchheeEecccc
Confidence 3578999999997655 89999999997 778888887553
No 106
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=23.62 E-value=77 Score=32.59 Aligned_cols=45 Identities=22% Similarity=0.092 Sum_probs=31.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC---CCCceeeecCCCCCcceeccccch
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ---LVDTWTVSDAPESRELIWNNLNIK 180 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~---~~~~~~v~~APeP~DI~W~Nl~~~ 180 (546)
...++|||+|.+..+|..|+-...+. +..++.+..++. |......
T Consensus 262 ~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~-----~~~a~~g 309 (377)
T KOG0153|consen 262 PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP-----KQAAQGG 309 (377)
T ss_pred cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC-----cccccCC
Confidence 35679999999999999988765442 455666666654 5544443
No 107
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=23.16 E-value=2e+02 Score=32.55 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=38.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC-------------CC--CcceeccccchhHHHHHHHHHH
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP-------------ES--RELIWNNLNIKFFQRQIRQYVV 191 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP-------------eP--~DI~W~Nl~~~~~~r~~R~~~~ 191 (546)
...|.|||.|.+..+|+.|.+.++.. +.+...++.++ .+ .-|+=.|+..--..|-+|.++.
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~ 635 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT 635 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHh
Confidence 35799999999999999999887632 23333333333 22 2455556655555666666543
No 108
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=22.36 E-value=1.4e+02 Score=29.55 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhcc
Q 009006 130 EKQLGAALVFFTSRVAAASAAQSLH 154 (546)
Q Consensus 130 ~~~~~~AFVtF~s~~~a~~a~q~~~ 154 (546)
.+..|++||+|.+..++..|.....
T Consensus 229 gKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 229 GKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccccceeeeecCHHHHHHHHHhhc
Confidence 3568999999999999999887654
No 109
>PHA03011 hypothetical protein; Provisional
Probab=22.27 E-value=1.3e+02 Score=25.09 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=40.5
Q ss_pred EecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHH
Q 009006 47 VVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLE 121 (546)
Q Consensus 47 ~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~ 121 (546)
.-|+.++..++.+.-+++..+.......|..-.+ +|.- ..-+....+|.|.+++.+++++.++|.
T Consensus 52 ~dfk~GD~Nai~e~ldeL~~qYN~L~dEYn~i~N------e~k~----~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 52 FDFKEGDINAIIEILDELIAQYNELLDEYNLIEN------EIKD----LEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 4467788888888888877777666665532100 0000 001234667888888888888887765
No 110
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=22.01 E-value=1.5e+02 Score=29.67 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.+|++-||.+-||+.-+. ++.+++.|..+ |.+.+|.+--|
T Consensus 160 ssp~NtsVY~G~I~~~lt----e~~mr~~Fs~f--G~I~EVRvFk~ 199 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLT----EDLMRQTFSPF--GPIQEVRVFKD 199 (321)
T ss_pred CCCCCceEEeCCcCcccc----HHHHHHhcccC--CcceEEEEecc
Confidence 468999999999998666 79999999998 55667665433
No 111
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=21.56 E-value=58 Score=31.46 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccCCCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQLVD 159 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~ 159 (546)
..+.|||-|.++.+|..|...++..+-.
T Consensus 132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 132 RRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred hccccceeehhhhhhhhcchhccchhhc
Confidence 4688999999999999998887765433
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=20.92 E-value=1.9e+02 Score=30.78 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
...+||++.|+|.+-. -+.|.+.|... |.|..|.+|.-
T Consensus 229 l~srtivaenLP~Dh~----~enl~kiFg~~--G~IksIRIckP 266 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHS----YENLSKIFGTV--GSIKSIRICKP 266 (484)
T ss_pred cccceEEEecCCcchH----HHHHHHHhhcc--cceeeeeecCC
Confidence 5789999999998755 47788888876 78999999875
No 113
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=20.06 E-value=1.1e+02 Score=24.94 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=17.7
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhC---CCceEEEE
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIY---PDTFYRSM 46 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~---p~~v~~v~ 46 (546)
-.++|.|+|.+.+ ...++..++++. +|+|.+|.
T Consensus 3 s~L~V~NLP~~~d----~~~I~~RL~qLsdNCGGkVl~v~ 38 (90)
T PF11608_consen 3 SLLYVSNLPTNKD----PSSIKNRLRQLSDNCGGKVLSVS 38 (90)
T ss_dssp EEEEEES--TTS-----HHHHHHHHHHHHHTTT--EEE--
T ss_pred cEEEEecCCCCCC----HHHHHHHHHHHhhccCCEEEEEe
Confidence 3578999998765 566666666544 57787763
Done!