Query 009006
Match_columns 546
No_of_seqs 223 out of 919
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 97.8 9.7E-05 3.3E-09 61.1 9.7 82 3-166 13-96 (99)
2 2dnz_A Probable RNA-binding pr 97.7 0.00041 1.4E-08 56.3 11.6 83 6-170 2-86 (95)
3 2e5h_A Zinc finger CCHC-type a 97.6 0.00041 1.4E-08 56.2 10.0 42 2-49 9-50 (94)
4 2jrs_A RNA-binding protein 39; 97.6 0.00043 1.5E-08 58.0 10.0 86 4-171 21-108 (108)
5 2dgv_A HnRNP M, heterogeneous 97.6 0.00061 2.1E-08 54.9 10.6 39 4-48 3-41 (92)
6 1x5s_A Cold-inducible RNA-bind 97.6 0.00049 1.7E-08 56.7 10.2 41 3-49 6-46 (102)
7 2dgs_A DAZ-associated protein 97.5 0.00084 2.9E-08 55.0 11.5 41 3-49 4-44 (99)
8 3s8s_A Histone-lysine N-methyl 97.5 0.00042 1.4E-08 58.4 9.7 80 6-167 3-84 (110)
9 3bs9_A Nucleolysin TIA-1 isofo 97.5 0.00033 1.1E-08 55.8 8.7 40 5-50 2-41 (87)
10 2lxi_A RNA-binding protein 10; 97.5 0.00017 5.8E-09 58.6 6.7 35 9-48 1-35 (91)
11 1x5u_A Splicing factor 3B subu 97.5 0.00084 2.9E-08 55.6 11.1 83 4-168 10-94 (105)
12 2lkz_A RNA-binding protein 5; 97.5 0.00025 8.5E-09 58.2 7.6 43 2-48 2-44 (95)
13 1whw_A Hypothetical protein ri 97.5 0.00081 2.8E-08 55.0 10.6 83 6-170 5-89 (99)
14 3mdf_A Peptidyl-prolyl CIS-tra 97.5 0.00048 1.6E-08 54.6 8.7 37 6-48 4-40 (85)
15 4a8x_A RNA-binding protein wit 97.5 0.00037 1.3E-08 55.6 8.0 36 7-48 2-37 (88)
16 2cq3_A RNA-binding protein 9; 97.4 0.0015 5.2E-08 53.8 11.8 39 4-48 10-48 (103)
17 3md1_A Nuclear and cytoplasmic 97.4 0.00076 2.6E-08 53.1 9.4 76 10-167 2-79 (83)
18 2cpz_A CUG triplet repeat RNA- 97.4 0.00078 2.7E-08 56.9 10.1 39 5-49 21-59 (115)
19 3p5t_L Cleavage and polyadenyl 97.4 0.0003 1E-08 56.7 6.9 81 10-170 2-84 (90)
20 2div_A TRNA selenocysteine ass 97.4 0.0011 3.8E-08 54.2 10.5 43 2-50 2-45 (99)
21 2cqc_A Arginine/serine-rich sp 97.4 0.00084 2.9E-08 54.4 9.4 40 4-49 10-49 (95)
22 2dgp_A Bruno-like 4, RNA bindi 97.4 0.0012 4.1E-08 54.7 10.5 83 4-168 8-95 (106)
23 2dgo_A Cytotoxic granule-assoc 97.4 0.0013 4.3E-08 55.5 10.8 41 4-50 10-50 (115)
24 2dnh_A Bruno-like 5, RNA bindi 97.4 0.0014 4.7E-08 54.3 10.8 39 4-48 10-48 (105)
25 2do4_A Squamous cell carcinoma 97.4 0.0012 4.2E-08 54.1 10.4 81 5-168 13-95 (100)
26 2cph_A RNA binding motif prote 97.4 0.0016 5.3E-08 54.1 11.0 85 4-169 10-97 (107)
27 2x1f_A MRNA 3'-END-processing 97.4 0.001 3.5E-08 54.2 9.6 79 9-169 2-82 (96)
28 2ywk_A Putative RNA-binding pr 97.4 0.00079 2.7E-08 54.6 8.8 40 4-49 11-50 (95)
29 1fxl_A Paraneoplastic encephal 97.3 0.0014 4.8E-08 58.5 11.2 101 8-190 1-109 (167)
30 1x5t_A Splicing factor 3B subu 97.3 0.0008 2.7E-08 54.7 8.7 80 6-167 2-84 (96)
31 2cqi_A Nucleolysin TIAR; RNA r 97.3 0.002 6.9E-08 53.1 11.3 39 5-49 11-49 (103)
32 4f25_A Polyadenylate-binding p 97.3 0.00089 3E-08 56.7 9.1 36 8-49 4-39 (115)
33 1p27_B RNA-binding protein 8A; 97.3 0.0014 4.8E-08 54.3 10.1 39 6-50 20-58 (106)
34 2cqg_A TDP-43, TAR DNA-binding 97.3 0.0014 4.9E-08 54.0 10.1 39 6-50 12-50 (103)
35 1wi8_A EIF-4B, eukaryotic tran 97.3 0.0016 5.4E-08 53.9 10.3 39 4-49 10-48 (104)
36 2dnp_A RNA-binding protein 14; 97.3 0.0018 6.3E-08 51.9 10.4 41 2-48 2-42 (90)
37 2cqd_A RNA-binding region cont 97.3 0.0016 5.4E-08 55.1 10.3 39 4-48 12-50 (116)
38 2d9p_A Polyadenylate-binding p 97.3 0.0016 5.6E-08 53.6 10.2 39 5-49 11-49 (103)
39 2cqb_A Peptidyl-prolyl CIS-tra 97.3 0.00081 2.8E-08 55.4 8.2 40 3-48 6-45 (102)
40 2dnm_A SRP46 splicing factor; 97.3 0.0015 5E-08 53.9 9.8 38 5-48 9-46 (103)
41 3s7r_A Heterogeneous nuclear r 97.3 0.001 3.6E-08 52.9 8.5 41 4-50 6-46 (87)
42 1oo0_B CG8781-PA, drosophila Y 97.3 0.0015 5E-08 54.6 9.7 38 5-48 22-59 (110)
43 1x4h_A RNA-binding protein 28; 97.2 0.0021 7.3E-08 53.6 10.7 38 6-49 12-49 (111)
44 2fy1_A RNA-binding motif prote 97.2 0.0021 7.3E-08 54.5 10.5 36 7-48 5-40 (116)
45 2cq0_A Eukaryotic translation 97.2 0.0015 5.2E-08 53.8 9.4 39 5-49 11-49 (103)
46 2la6_A RNA-binding protein FUS 97.2 0.0021 7.3E-08 52.5 10.1 35 4-44 8-42 (99)
47 3ucg_A Polyadenylate-binding p 97.2 0.0014 4.9E-08 52.3 8.8 37 8-50 5-41 (89)
48 2dhg_A TRNA selenocysteine ass 97.2 0.0023 7.9E-08 52.7 10.4 41 4-49 4-44 (104)
49 1x4c_A Splicing factor, argini 97.2 0.0022 7.7E-08 53.4 10.2 38 5-48 11-48 (108)
50 2dnq_A RNA-binding protein 4B; 97.2 0.0033 1.1E-07 50.4 10.9 37 5-47 4-40 (90)
51 1h2v_Z 20 kDa nuclear CAP bind 97.2 0.0021 7E-08 57.5 10.4 81 6-168 36-118 (156)
52 2khc_A Testis-specific RNP-typ 97.2 0.0015 5E-08 55.4 8.9 37 6-48 37-73 (118)
53 1b7f_A Protein (SXL-lethal pro 97.2 0.0017 5.8E-08 58.1 9.9 101 8-190 2-110 (168)
54 2dgx_A KIAA0430 protein; RRM d 97.2 0.0029 9.8E-08 51.5 10.3 41 2-48 2-46 (96)
55 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.2 0.0021 7.2E-08 56.0 10.1 39 4-48 58-96 (140)
56 2cpf_A RNA binding motif prote 97.1 0.0019 6.6E-08 52.6 9.0 39 7-51 3-41 (98)
57 3ex7_B RNA-binding protein 8A; 97.1 0.0023 7.9E-08 54.8 9.8 40 4-49 17-56 (126)
58 2err_A Ataxin-2-binding protei 97.1 0.0016 5.3E-08 54.6 8.5 40 3-48 23-62 (109)
59 2diu_A KIAA0430 protein; struc 97.1 0.0017 5.7E-08 52.9 8.1 40 134-173 47-88 (96)
60 2kxn_B Transformer-2 protein h 97.1 0.0032 1.1E-07 54.5 10.6 38 6-49 43-80 (129)
61 2dng_A Eukaryotic translation 97.1 0.0029 9.9E-08 52.1 10.0 40 4-50 10-49 (103)
62 3ulh_A THO complex subunit 4; 97.1 0.0021 7.1E-08 53.4 9.0 39 5-49 25-63 (107)
63 2dgw_A Probable RNA-binding pr 97.1 0.0022 7.6E-08 51.5 8.9 41 3-50 4-44 (91)
64 2dgt_A RNA-binding protein 30; 97.1 0.003 1E-07 50.8 9.7 40 2-47 3-42 (92)
65 2cqp_A RNA-binding protein 12; 97.1 0.00098 3.4E-08 54.4 6.7 39 132-170 56-96 (98)
66 2do0_A HnRNP M, heterogeneous 97.1 0.0033 1.1E-07 52.7 10.1 38 5-48 11-48 (114)
67 2cpj_A Non-POU domain-containi 97.1 0.0034 1.2E-07 51.3 9.9 38 4-47 10-47 (99)
68 1wg5_A Heterogeneous nuclear r 97.1 0.0029 9.8E-08 52.4 9.4 38 5-48 11-49 (104)
69 1x4a_A Splicing factor, argini 97.1 0.0056 1.9E-07 50.9 11.3 36 6-47 19-54 (109)
70 2cpe_A RNA-binding protein EWS 97.0 0.003 1E-07 53.0 9.5 34 4-43 10-43 (113)
71 2dh8_A DAZ-associated protein 97.0 0.0022 7.5E-08 53.0 8.5 40 5-50 12-51 (105)
72 2db1_A Heterogeneous nuclear r 97.0 0.00049 1.7E-08 58.7 4.5 39 6-48 14-53 (118)
73 2cpd_A Apobec-1 stimulating pr 97.0 0.0052 1.8E-07 50.1 10.7 39 3-45 9-47 (99)
74 1x4g_A Nucleolysin TIAR; struc 97.0 0.0047 1.6E-07 51.4 10.6 37 6-48 22-58 (109)
75 2j76_E EIF-4B, EIF4B, eukaryot 97.0 0.0019 6.5E-08 53.1 7.9 40 4-50 14-53 (100)
76 2hgl_A HNRPF protein, heteroge 97.0 0.00071 2.4E-08 59.4 5.5 37 6-48 41-80 (136)
77 3lqv_A PRE-mRNA branch site pr 97.0 0.0047 1.6E-07 51.9 10.5 96 6-188 5-102 (115)
78 1p1t_A Cleavage stimulation fa 97.0 0.002 6.9E-08 53.1 8.0 81 7-169 6-88 (104)
79 2dgu_A Heterogeneous nuclear r 97.0 0.0049 1.7E-07 50.8 10.2 35 6-46 8-42 (103)
80 2e44_A Insulin-like growth fac 97.0 0.0052 1.8E-07 49.7 10.2 34 6-45 12-45 (96)
81 1x4e_A RNA binding motif, sing 97.0 0.0026 8.9E-08 50.3 8.1 38 6-49 2-39 (85)
82 2kt5_A RNA and export factor-b 97.0 0.0044 1.5E-07 53.0 10.0 37 6-48 32-68 (124)
83 1wf1_A RNA-binding protein RAL 97.0 0.0035 1.2E-07 52.4 9.1 35 7-47 25-60 (110)
84 2mss_A Protein (musashi1); RNA 97.0 0.0023 7.9E-08 49.3 7.4 32 11-48 1-32 (75)
85 1s79_A Lupus LA protein; RRM, 97.0 0.003 1E-07 52.4 8.6 37 6-48 8-44 (103)
86 1iqt_A AUF1, heterogeneous nuc 96.9 0.0017 5.7E-08 50.1 6.5 31 11-47 1-31 (75)
87 4f02_A Polyadenylate-binding p 96.9 0.0048 1.6E-07 58.1 11.1 101 7-189 13-123 (213)
88 1uaw_A Mouse-musashi-1; RNP-ty 96.9 0.0018 6.2E-08 50.1 6.8 33 11-49 2-34 (77)
89 2ek1_A RNA-binding protein 12; 96.9 0.0011 3.9E-08 53.6 5.6 29 5-37 11-39 (95)
90 3nmr_A Cugbp ELAV-like family 96.9 0.0048 1.6E-07 55.4 10.0 103 8-190 2-116 (175)
91 1x5o_A RNA binding motif, sing 96.9 0.0071 2.4E-07 50.7 10.4 39 5-49 21-59 (114)
92 2rs2_A Musashi-1, RNA-binding 96.9 0.005 1.7E-07 51.4 9.2 38 6-49 22-59 (109)
93 2jvo_A Nucleolar protein 3; nu 96.8 0.0064 2.2E-07 50.8 9.8 38 4-47 26-63 (108)
94 1u6f_A Tcubp1, RNA-binding pro 96.8 0.0057 2E-07 53.3 9.9 37 7-49 40-76 (139)
95 2dis_A Unnamed protein product 96.8 0.0084 2.9E-07 49.7 10.4 38 5-48 4-42 (109)
96 3r27_A HnRNP L, heterogeneous 96.8 0.0078 2.7E-07 49.6 9.9 39 4-48 16-54 (100)
97 3ns6_A Eukaryotic translation 96.8 0.0017 6E-08 53.4 6.0 37 8-50 5-47 (100)
98 2dnl_A Cytoplasmic polyadenyla 96.8 0.0037 1.3E-07 52.7 8.2 32 6-43 5-36 (114)
99 1why_A Hypothetical protein ri 96.8 0.012 4.2E-07 47.6 11.1 37 5-47 13-49 (97)
100 2a3j_A U1 small nuclear ribonu 96.8 0.0047 1.6E-07 53.4 8.8 44 133-176 72-117 (127)
101 2ki2_A SS-DNA binding protein 96.8 0.0016 5.3E-08 52.3 5.4 33 10-48 2-34 (90)
102 2kn4_A Immunoglobulin G-bindin 96.8 0.0065 2.2E-07 54.1 10.0 37 6-48 67-103 (158)
103 2jvr_A Nucleolar protein 3; RN 96.8 0.0041 1.4E-07 52.4 8.1 34 6-45 25-59 (111)
104 2f3j_A RNA and export factor b 96.8 0.0056 1.9E-07 56.1 9.7 86 7-175 86-173 (177)
105 1whx_A Hypothetical protein ri 96.7 0.0034 1.2E-07 52.7 7.3 36 6-47 7-42 (111)
106 2cpy_A RNA-binding protein 12; 96.7 0.003 1E-07 53.2 7.0 37 6-48 12-49 (114)
107 1wex_A Hypothetical protein (r 96.7 0.012 4E-07 48.9 10.5 37 6-48 12-48 (104)
108 2qfj_A FBP-interacting repress 96.7 0.012 4.1E-07 54.9 11.9 36 8-49 27-62 (216)
109 1wez_A HnRNP H', FTP-3, hetero 96.7 0.0038 1.3E-07 51.6 7.4 38 5-49 11-48 (102)
110 3md3_A Nuclear and cytoplasmic 96.7 0.008 2.7E-07 53.3 10.2 33 10-48 1-33 (166)
111 2lea_A Serine/arginine-rich sp 96.7 0.0046 1.6E-07 53.9 8.3 36 7-48 45-80 (135)
112 2xnq_A Nuclear polyadenylated 96.7 0.013 4.5E-07 47.7 10.5 38 4-47 17-55 (97)
113 3beg_B Splicing factor, argini 96.7 0.0051 1.7E-07 52.0 8.2 35 7-47 14-48 (115)
114 2lmi_A GRSF-1, G-rich sequence 96.7 0.0035 1.2E-07 52.2 6.9 41 3-47 5-46 (107)
115 3n9u_C Cleavage and polyadenyl 96.7 0.0066 2.3E-07 54.4 9.2 79 8-166 54-134 (156)
116 1x4b_A Heterogeneous nuclear r 96.7 0.0071 2.4E-07 50.9 8.8 36 9-50 27-62 (116)
117 1rk8_A CG8781-PA, CG8781-PA pr 96.6 0.0086 3E-07 53.9 9.8 38 6-49 69-106 (165)
118 2kvi_A Nuclear polyadenylated 96.6 0.006 2.1E-07 49.5 8.0 38 4-47 5-43 (96)
119 2cq4_A RNA binding motif prote 96.6 0.0045 1.5E-07 52.0 7.4 35 9-49 25-59 (114)
120 1l3k_A Heterogeneous nuclear r 96.6 0.011 3.9E-07 54.1 10.7 39 6-50 10-48 (196)
121 1nu4_A U1A RNA binding domain; 96.6 0.0062 2.1E-07 49.4 7.9 40 133-172 51-92 (97)
122 2la4_A Nuclear and cytoplasmic 96.6 0.009 3.1E-07 48.8 9.0 36 6-47 24-59 (101)
123 2dnn_A RNA-binding protein 12; 96.6 0.0034 1.2E-07 52.7 6.4 35 7-48 14-48 (109)
124 2jwn_A Embryonic polyadenylate 96.6 0.0066 2.3E-07 51.7 8.4 37 8-50 35-71 (124)
125 2cjk_A Nuclear polyadenylated 96.6 0.0042 1.4E-07 55.4 7.4 101 8-190 2-108 (167)
126 2fc8_A NCL protein; structure 96.6 0.009 3.1E-07 48.9 8.9 38 132-169 53-92 (102)
127 2e5j_A Methenyltetrahydrofolat 96.6 0.014 4.7E-07 47.4 9.9 37 133-169 56-94 (97)
128 1wg1_A KIAA1579 protein, homol 96.5 0.0059 2E-07 48.7 7.0 38 133-170 40-79 (88)
129 2hvz_A Splicing factor, argini 96.5 0.012 4.2E-07 48.0 8.9 32 11-48 2-33 (101)
130 2cpi_A CCR4-NOT transcription 96.5 0.0077 2.6E-07 50.4 7.8 84 5-167 11-99 (111)
131 3md3_A Nuclear and cytoplasmic 96.5 0.013 4.5E-07 51.9 9.8 40 5-50 83-122 (166)
132 1x4f_A Matrin 3; structural ge 96.5 0.01 3.4E-07 50.1 8.3 37 6-48 22-59 (112)
133 3sde_A Paraspeckle component 1 96.5 0.017 5.8E-07 56.1 11.3 97 5-189 18-116 (261)
134 2i2y_A Fusion protein consists 96.4 0.019 6.4E-07 50.7 10.5 38 5-48 69-106 (150)
135 2fc9_A NCL protein; structure 96.4 0.015 5E-07 47.5 8.8 29 5-37 11-39 (101)
136 2hgn_A Heterogeneous nuclear r 96.4 0.0048 1.6E-07 54.2 6.1 36 6-48 43-78 (139)
137 2qfj_A FBP-interacting repress 96.4 0.016 5.4E-07 54.0 10.1 38 7-50 123-160 (216)
138 2hgm_A HNRPF protein, heteroge 96.3 0.0083 2.8E-07 51.7 7.3 37 5-48 38-76 (126)
139 2wbr_A GW182, gawky, LD47780P; 96.3 0.016 5.3E-07 46.5 8.0 73 6-166 4-78 (89)
140 1b7f_A Protein (SXL-lethal pro 96.3 0.024 8.1E-07 50.4 10.3 39 6-50 86-124 (168)
141 2nlw_A Eukaryotic translation 96.3 0.021 7.3E-07 47.1 9.2 82 8-169 14-100 (105)
142 2e5g_A U6 snRNA-specific termi 96.2 0.029 1E-06 45.1 9.8 35 5-45 4-38 (94)
143 2m2b_A RNA-binding protein 10; 96.2 0.0089 3.1E-07 51.6 7.0 36 7-48 21-58 (131)
144 2krb_A Eukaryotic translation 96.2 0.012 4E-07 46.1 7.0 37 9-47 1-39 (81)
145 2cpx_A Hypothetical protein FL 96.2 0.033 1.1E-06 46.5 10.3 36 131-166 65-102 (115)
146 1wel_A RNA-binding protein 12; 96.2 0.0047 1.6E-07 52.8 4.9 31 6-42 22-52 (124)
147 3nmr_A Cugbp ELAV-like family 96.2 0.024 8.3E-07 50.6 9.9 37 7-49 93-129 (175)
148 3q2s_C Cleavage and polyadenyl 96.1 0.013 4.3E-07 56.0 8.2 39 8-50 67-105 (229)
149 2g4b_A Splicing factor U2AF 65 96.1 0.019 6.4E-07 51.4 9.0 38 7-50 92-129 (172)
150 1fj7_A Nucleolin RBD1, protein 96.1 0.0079 2.7E-07 49.2 5.9 36 131-167 56-93 (101)
151 3smz_A Protein raver-1, ribonu 96.1 0.033 1.1E-06 54.4 11.3 58 133-190 57-116 (284)
152 1fxl_A Paraneoplastic encephal 96.1 0.029 1E-06 49.6 10.0 38 6-49 85-122 (167)
153 2pe8_A Splicing factor 45; RRM 96.1 0.031 1.1E-06 46.3 9.3 85 6-168 5-93 (105)
154 2adc_A Polypyrimidine tract-bi 96.0 0.05 1.7E-06 51.5 11.7 38 5-48 30-68 (229)
155 2cqh_A IGF-II mRNA-binding pro 96.0 0.023 8E-07 45.5 7.8 29 5-37 4-32 (93)
156 2voo_A Lupus LA protein; RNA-b 95.9 0.02 7E-07 53.0 8.2 35 9-49 109-143 (193)
157 3tyt_A Heterogeneous nuclear r 95.9 0.059 2E-06 50.3 11.5 36 7-48 2-38 (205)
158 1qm9_A Polypyrimidine tract-bi 95.9 0.0051 1.7E-07 56.8 4.0 38 8-51 2-40 (198)
159 2yh0_A Splicing factor U2AF 65 95.7 0.04 1.4E-06 50.4 9.5 78 7-166 112-191 (198)
160 2ghp_A U4/U6 snRNA-associated 95.7 0.046 1.6E-06 53.6 10.4 101 5-191 37-139 (292)
161 1l3k_A Heterogeneous nuclear r 95.7 0.038 1.3E-06 50.5 9.1 38 7-50 102-139 (196)
162 4f02_A Polyadenylate-binding p 95.5 0.036 1.2E-06 51.9 8.6 36 8-49 102-137 (213)
163 1fjc_A Nucleolin RBD2, protein 95.5 0.026 8.9E-07 45.5 6.6 36 132-167 52-89 (96)
164 3pgw_S U1-70K; protein-RNA com 95.4 0.054 1.8E-06 56.8 10.3 84 9-174 102-187 (437)
165 3pgw_A U1-A; protein-RNA compl 95.1 0.095 3.3E-06 51.0 10.4 39 133-171 52-92 (282)
166 3smz_A Protein raver-1, ribonu 95.1 0.055 1.9E-06 52.8 8.7 82 7-170 182-265 (284)
167 1fje_B Nucleolin RBD12, protei 95.1 0.0052 1.8E-07 55.4 1.0 36 131-166 134-171 (175)
168 2cjk_A Nuclear polyadenylated 95.1 0.053 1.8E-06 48.0 7.8 35 8-48 86-120 (167)
169 1sjr_A Polypyrimidine tract-bi 94.8 0.22 7.6E-06 44.7 10.9 35 133-167 84-122 (164)
170 1x5p_A Negative elongation fac 94.8 0.26 9E-06 39.5 10.5 36 133-168 49-86 (97)
171 3d2w_A TAR DNA-binding protein 94.7 0.029 1E-06 44.9 4.4 40 4-49 6-45 (89)
172 2g4b_A Splicing factor U2AF 65 94.5 0.32 1.1E-05 43.0 11.3 57 133-190 51-115 (172)
173 1sjq_A Polypyrimidine tract-bi 94.2 0.071 2.4E-06 44.2 5.7 39 6-50 13-51 (105)
174 3sde_A Paraspeckle component 1 94.1 0.15 5.2E-06 49.2 9.0 37 8-50 95-131 (261)
175 2ytc_A PRE-mRNA-splicing facto 94.1 0.091 3.1E-06 41.0 6.0 40 4-49 7-46 (85)
176 2cq2_A Hypothetical protein LO 94.0 0.17 5.8E-06 42.6 7.9 35 7-47 23-59 (114)
177 2adc_A Polypyrimidine tract-bi 94.0 0.33 1.1E-05 45.8 10.8 37 6-48 148-185 (229)
178 3egn_A RNA-binding protein 40; 94.0 0.15 5E-06 44.4 7.7 36 131-166 90-127 (143)
179 3u1l_A PRE-mRNA-splicing facto 93.7 0.18 6.3E-06 48.2 8.4 41 6-48 131-176 (240)
180 3tyt_A Heterogeneous nuclear r 93.7 0.14 5E-06 47.6 7.6 35 7-47 121-157 (205)
181 2ghp_A U4/U6 snRNA-associated 93.6 0.14 4.9E-06 50.0 7.8 38 6-49 207-245 (292)
182 2yh0_A Splicing factor U2AF 65 93.5 0.28 9.6E-06 44.6 9.2 27 7-37 2-28 (198)
183 1wf0_A TDP-43, TAR DNA-binding 93.4 0.064 2.2E-06 42.4 3.9 38 7-50 3-40 (88)
184 2e5i_A Heterogeneous nuclear r 93.4 0.56 1.9E-05 39.9 10.1 36 135-170 64-103 (124)
185 3zzy_A Polypyrimidine tract-bi 93.3 0.33 1.1E-05 41.8 8.6 35 134-168 67-105 (130)
186 2dha_A FLJ20171 protein; RRM d 93.2 0.076 2.6E-06 45.4 4.4 41 6-50 20-62 (123)
187 2ad9_A Polypyrimidine tract-bi 93.1 0.12 4.2E-06 43.8 5.4 40 5-50 27-66 (119)
188 2cq1_A PTB-like protein L; RRM 93.0 0.13 4.6E-06 42.1 5.5 40 5-50 11-50 (101)
189 2xs2_A Deleted in azoospermia- 93.0 0.095 3.3E-06 42.6 4.6 40 5-50 5-44 (102)
190 1jmt_A Splicing factor U2AF 35 92.9 0.29 1E-05 40.2 7.4 57 111-167 34-104 (104)
191 2dit_A HIV TAT specific factor 92.7 0.38 1.3E-05 39.9 7.9 65 112-176 35-109 (112)
192 1x4d_A Matrin 3; structural ge 91.9 0.14 4.9E-06 42.1 4.2 38 6-49 12-50 (102)
193 3s6e_A RNA-binding protein 39; 90.0 0.38 1.3E-05 40.3 5.1 56 112-167 26-91 (114)
194 3v4m_A Splicing factor U2AF 65 88.6 0.79 2.7E-05 37.6 6.0 36 132-167 58-95 (105)
195 2d9o_A DNAJ (HSP40) homolog, s 87.5 0.9 3.1E-05 37.0 5.6 37 131-167 52-88 (100)
196 2hzc_A Splicing factor U2AF 65 87.4 0.49 1.7E-05 36.8 3.9 41 6-50 3-52 (87)
197 2lcw_A RNA-binding protein FUS 84.7 0.2 6.7E-06 41.8 0.0 34 5-44 3-36 (116)
198 3pgw_A U1-A; protein-RNA compl 82.3 1.6 5.5E-05 42.0 5.8 37 6-48 204-240 (282)
199 2j8a_A Histone-lysine N-methyl 82.1 1.1 3.8E-05 38.5 3.8 37 10-52 3-43 (136)
200 1qm9_A Polypyrimidine tract-bi 80.9 1.8 6.3E-05 39.1 5.3 38 6-49 117-155 (198)
201 3tht_A Alkylated DNA repair pr 78.5 4.7 0.00016 40.5 7.8 23 134-156 57-79 (345)
202 2ytc_A PRE-mRNA-splicing facto 77.0 2.1 7.3E-05 32.8 3.8 22 132-153 47-68 (85)
203 2bz2_A Negative elongation fac 76.5 3.5 0.00012 34.5 5.3 38 131-168 71-110 (121)
204 1wf0_A TDP-43, TAR DNA-binding 75.4 1.4 4.8E-05 34.3 2.3 37 132-168 41-77 (88)
205 2cq1_A PTB-like protein L; RRM 71.6 3.7 0.00013 33.2 4.1 35 133-167 51-89 (101)
206 2dhx_A Poly (ADP-ribose) polym 71.2 5.3 0.00018 32.6 4.8 38 7-48 6-46 (104)
207 3ue2_A Poly(U)-binding-splicin 70.8 2.6 9E-05 35.3 3.1 36 133-168 71-108 (118)
208 3d2w_A TAR DNA-binding protein 70.1 2.8 9.7E-05 32.9 3.0 35 132-166 47-81 (89)
209 1x4d_A Matrin 3; structural ge 69.9 3.7 0.00013 33.4 3.7 36 133-168 52-91 (102)
210 1sjq_A Polypyrimidine tract-bi 67.2 5.1 0.00017 32.8 4.0 35 133-167 52-90 (105)
211 3ue2_A Poly(U)-binding-splicin 66.8 4.7 0.00016 33.7 3.8 43 7-52 18-62 (118)
212 2hzc_A Splicing factor U2AF 65 66.5 5.1 0.00017 30.7 3.8 23 132-155 52-74 (87)
213 2ad9_A Polypyrimidine tract-bi 66.4 5 0.00017 33.7 3.9 35 133-167 67-105 (119)
214 1fje_B Nucleolin RBD12, protei 63.1 6.4 0.00022 34.5 4.2 34 6-45 96-129 (175)
215 1owx_A Lupus LA protein, SS-B, 58.8 11 0.00036 31.8 4.5 43 5-52 14-56 (121)
216 2lcw_A RNA-binding protein FUS 61.8 2.2 7.6E-05 35.1 0.0 36 131-166 55-92 (116)
217 3he5_A Synzip1; heterodimeric 52.5 34 0.0011 22.5 5.0 20 102-121 29-48 (49)
218 2dha_A FLJ20171 protein; RRM d 52.1 5.7 0.0002 33.4 1.8 22 131-152 66-87 (123)
219 3v4m_A Splicing factor U2AF 65 51.6 12 0.0004 30.4 3.6 43 8-52 4-52 (105)
220 2dnr_A Synaptojanin-1; RRM dom 51.4 11 0.00038 29.9 3.2 32 134-166 50-83 (91)
221 1l8d_A DNA double-strand break 51.2 55 0.0019 26.5 7.8 30 96-125 50-85 (112)
222 3dxb_A Thioredoxin N-terminall 42.5 20 0.00067 33.0 4.0 37 132-168 174-212 (222)
223 2d9o_A DNAJ (HSP40) homolog, s 41.3 57 0.002 26.0 6.2 45 2-48 3-50 (100)
224 2bz2_A Negative elongation fac 41.1 24 0.00082 29.2 4.0 35 6-48 36-70 (121)
225 2xs2_A Deleted in azoospermia- 40.1 5.7 0.00019 31.6 -0.1 20 132-151 49-68 (102)
226 2kn4_A Immunoglobulin G-bindin 39.6 42 0.0014 28.7 5.5 62 131-192 11-93 (158)
227 2dit_A HIV TAT specific factor 39.4 28 0.00095 28.1 4.1 40 6-47 12-58 (112)
228 2dnr_A Synaptojanin-1; RRM dom 39.2 30 0.001 27.5 3.9 45 5-51 3-51 (91)
229 1go4_E MAD1 (mitotic arrest de 38.8 92 0.0031 25.1 6.8 70 52-127 19-91 (100)
230 2dhx_A Poly (ADP-ribose) polym 38.3 37 0.0012 27.6 4.4 44 134-177 48-94 (104)
231 2rdd_B UPF0092 membrane protei 35.7 18 0.00062 23.5 1.8 18 396-413 4-21 (37)
232 3s6e_A RNA-binding protein 39; 29.8 77 0.0026 25.9 5.3 42 8-51 6-53 (114)
233 1ufw_A Synaptojanin 2; RNP dom 29.1 30 0.001 27.7 2.4 19 133-151 58-76 (95)
234 2l9w_A U4/U6 snRNA-associated- 28.9 84 0.0029 25.9 5.1 47 2-52 14-63 (117)
235 1wey_A Calcipressin 1; structu 24.8 67 0.0023 26.1 3.8 43 11-53 7-57 (104)
236 3nmd_A CGMP dependent protein 20.6 2.7E+02 0.0094 20.8 6.5 22 106-127 42-63 (72)
237 2lf0_A Uncharacterized protein 20.0 1.5E+02 0.0053 24.4 5.0 23 104-126 36-58 (123)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.82 E-value=9.7e-05 Score=61.10 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=61.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAG 82 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~ 82 (546)
++...+..+|.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 13 en~~~~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~------------------------------ 56 (99)
T 4fxv_A 13 ENLYFQGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIRDKV------------------------------ 56 (99)
T ss_dssp ---CCCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECSS------------------------------
T ss_pred ccccCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeeecCC------------------------------
Confidence 45566778999999999987 79999999997 7899988875421
Q ss_pred CCCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCc
Q 009006 83 KPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDT 160 (546)
Q Consensus 83 ~~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~ 160 (546)
.....|.|||+|.+..+|..|.+.++.. ....
T Consensus 57 ----------------------------------------------tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 57 ----------------------------------------------AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp ----------------------------------------------SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ----------------------------------------------CCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 0123579999999999999999877543 3345
Q ss_pred eeeecC
Q 009006 161 WTVSDA 166 (546)
Q Consensus 161 ~~v~~A 166 (546)
++|+.|
T Consensus 91 l~V~~A 96 (99)
T 4fxv_A 91 IKVSYA 96 (99)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 667766
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=0.00041 Score=56.34 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=62.7
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 85 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 85 (546)
.+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~~~--------------------------------- 42 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNIT----EDMLRGIFEPF--GKIDNIVLMKDSD--------------------------------- 42 (95)
T ss_dssp CSCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEECCSS---------------------------------
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEeecCC---------------------------------
Confidence 35778999999999876 79999999997 6788887763311
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceee
Q 009006 86 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 163 (546)
Q Consensus 86 ~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 163 (546)
..+..+.|||+|.+.++|..|.+.++.. +...++|
T Consensus 43 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 43 -------------------------------------------TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp -------------------------------------------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 0134579999999999999999876554 3456777
Q ss_pred ecCCCCC
Q 009006 164 SDAPESR 170 (546)
Q Consensus 164 ~~APeP~ 170 (546)
+.|.++.
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 7775544
No 3
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00041 Score=56.21 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 2 SPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
+....++..+|.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 50 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLT----NNDLYRIFSKY--GKVVKVTIMK 50 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSC----HHHHHHHTTTT--SCEEEEEECC
T ss_pred CCCCCCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 345567889999999999887 78999999997 6788887653
No 4
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.56 E-value=0.00043 Score=58.04 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 83 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~ 83 (546)
...+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 21 ~~~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~~------------------------------ 64 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNIT----EDMLRGIFEPF--GRIESIQLMMDSET------------------------------ 64 (108)
T ss_dssp CSCSSCEEEEEECCCSSCC----HHHHHHHHTTT--SCEEEEEEEEETTT------------------------------
T ss_pred cCCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcCCC------------------------------
Confidence 4467789999999999876 79999999997 67888877643110
Q ss_pred CCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCce
Q 009006 84 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW 161 (546)
Q Consensus 84 ~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~ 161 (546)
....|.|||+|.+..+|..|.+.+... ....+
T Consensus 65 ----------------------------------------------g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 65 ----------------------------------------------GRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp ----------------------------------------------TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ----------------------------------------------CccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 123579999999999999999877654 34567
Q ss_pred eeecCCCCCc
Q 009006 162 TVSDAPESRE 171 (546)
Q Consensus 162 ~v~~APeP~D 171 (546)
+|+.|-+..|
T Consensus 99 ~V~~a~~k~d 108 (108)
T 2jrs_A 99 KVGHVTERTD 108 (108)
T ss_dssp EEECSCSSCC
T ss_pred EEEEcccCCC
Confidence 8888866554
No 5
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.55 E-value=0.00061 Score=54.89 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
...+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~~~i~ 41 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFT----WKMLKDKFNEC--GHVLYADIK 41 (92)
T ss_dssp CSSSSCCEEEECSCCTTCC----HHHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4457889999999999877 79999999997 678887665
No 6
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=0.00049 Score=56.70 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=33.8
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
....+...||.|.|||.+++ +++|+++|+++ |.|.++.+..
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 46 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVK 46 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECC
T ss_pred CCCCCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 34567889999999999887 79999999998 6788887753
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=0.00084 Score=54.97 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
........||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 44 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCG----ETELREYFKKF--GVVTEVVMIY 44 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCC----HHHHHHHHSSS--SCEEEEEECC
T ss_pred CCCCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 34457789999999999887 79999999997 6788887764
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.54 E-value=0.00042 Score=58.42 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 85 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 85 (546)
.+...||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|..
T Consensus 3 ~~p~~~lfV~nL~~~~t----e~~L~~~F~~~--G~i~~v~i~~d~~--------------------------------- 43 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVR----ETFLKDMCRKY--GEVEEVEILLHPR--------------------------------- 43 (110)
T ss_dssp CSCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT---------------------------------
T ss_pred CCCCcEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEECCC---------------------------------
Confidence 36678999999999887 79999999997 7899998875521
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceee
Q 009006 86 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 163 (546)
Q Consensus 86 ~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 163 (546)
..+..|.|||+|++.++|..|.+.++.. ....++|
T Consensus 44 -------------------------------------------tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 44 -------------------------------------------TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp -------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred -------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 0123589999999999999999987654 3445677
Q ss_pred ecCC
Q 009006 164 SDAP 167 (546)
Q Consensus 164 ~~AP 167 (546)
+.|+
T Consensus 81 ~~a~ 84 (110)
T 3s8s_A 81 QLDI 84 (110)
T ss_dssp EECS
T ss_pred EECC
Confidence 7775
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.54 E-value=0.00033 Score=55.82 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.1
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
+.++.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 2 p~~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 2 PLGSHFHVFVGDLSPEIT----TAAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp ----CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCceEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 356789999999999876 79999999998 67888877643
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.51 E-value=0.00017 Score=58.55 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=27.1
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
+.+|.|+|||.+.+ +++|+++|+++. ..|.+|.++
T Consensus 1 S~~i~v~nLp~~~t----e~~l~~~F~~~G-~~v~~v~i~ 35 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT----EDDIRGQLQSHG-VQAREVRLM 35 (91)
T ss_dssp CCEEEEETCCSSCC----HHHHHHHHHHHT-CCCSBCCSS
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHhC-CEeEEEEEE
Confidence 36899999999987 799999999983 156555443
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=0.00084 Score=55.59 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 83 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~ 83 (546)
......+||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------- 52 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPKDRV------------------------------- 52 (105)
T ss_dssp CCCCTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCBCSS-------------------------------
T ss_pred ccCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC-------------------------------
Confidence 3456789999999999887 79999999998 6788876653211
Q ss_pred CCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCce
Q 009006 84 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW 161 (546)
Q Consensus 84 ~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~ 161 (546)
.....|.|||+|.+..+|..|.+.++.. ....+
T Consensus 53 ---------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 53 ---------------------------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp ---------------------------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred ---------------------------------------------CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 0124578999999999999999977653 34456
Q ss_pred eeecCCC
Q 009006 162 TVSDAPE 168 (546)
Q Consensus 162 ~v~~APe 168 (546)
+|+.|-.
T Consensus 88 ~v~~a~~ 94 (105)
T 1x5u_A 88 RVNKASA 94 (105)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 7776643
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.51 E-value=0.00025 Score=58.21 Aligned_cols=43 Identities=2% Similarity=0.037 Sum_probs=33.0
Q ss_pred CCCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 2 SPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
+......--||+|+|||.+.+ +++|+++|+++.+-.+.+|.++
T Consensus 2 g~~~~~~m~tlfV~nL~~~~t----ee~L~~~F~~~G~i~v~~v~i~ 44 (95)
T 2lkz_A 2 GHHHHHHMDTIILRNIAPHTV----VDSIMTALSPYASLAVNNIRLI 44 (95)
T ss_dssp CCCSSCCCCEEEEESCCTTCC----HHHHHHHSTTTCCCCGGGEECC
T ss_pred CcccCCccCEEEEeCCCCcCC----HHHHHHHHHhhCCccEEEEEEE
Confidence 445567788999999999887 7999999999843345566554
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=0.00081 Score=55.03 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 85 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 85 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 45 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYPIDSL--------------------------------- 45 (99)
T ss_dssp CCSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCCCTT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEecCC---------------------------------
Confidence 46778999999999887 79999999997 6787776543220
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceee
Q 009006 86 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 163 (546)
Q Consensus 86 ~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 163 (546)
.....|.|||+|.+..+|..|.+.++.. ....+.|
T Consensus 46 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 46 -------------------------------------------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp -------------------------------------------TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred -------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 0134579999999999999999876543 3445667
Q ss_pred ecCCCCC
Q 009006 164 SDAPESR 170 (546)
Q Consensus 164 ~~APeP~ 170 (546)
+.|-.+.
T Consensus 83 ~~a~~~~ 89 (99)
T 1whw_A 83 LPSTIKK 89 (99)
T ss_dssp EECCCCS
T ss_pred EEcCCCc
Confidence 6665443
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.47 E-value=0.00048 Score=54.58 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=31.6
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.++..||.|+|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 4 ~~~~~~l~V~nl~~~~~----~~~l~~~f~~~--G~i~~v~i~ 40 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 40 (85)
T ss_dssp CCCSSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 46789999999999876 79999999997 678887664
No 15
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.46 E-value=0.00037 Score=55.61 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=30.4
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 2 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~ 37 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT----KDHIMEIFSTY--GKIKMIDMP 37 (88)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEE
Confidence 4578999999999887 79999999997 678877665
No 16
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=0.0015 Score=53.82 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.......+|.|.|||.+++ +++|+++|+++ |.|.+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~ 48 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEII 48 (103)
T ss_dssp CCSCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 3456779999999999887 79999999997 678888775
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.43 E-value=0.00076 Score=53.14 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=58.3
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 89 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP 89 (546)
+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~~~------------------------------------- 38 (83)
T 3md1_A 2 FNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWDMQ------------------------------------- 38 (83)
T ss_dssp EEEEEECCCTTCC----HHHHHHHHTTS--TTEEEEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEcCC-------------------------------------
Confidence 7999999999886 79999999997 6788887764421
Q ss_pred cccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC
Q 009006 90 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 167 (546)
Q Consensus 90 ~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 167 (546)
.....|.|||+|.+..+|..|.+.++.. ....++++.|-
T Consensus 39 ---------------------------------------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 39 ---------------------------------------TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp ---------------------------------------TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---------------------------------------CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 0123579999999999999999876544 33456676664
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.43 E-value=0.00078 Score=56.88 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
..+...||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 21 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp CCSTTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 345679999999999887 79999999998 6788887763
No 19
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.41 E-value=0.0003 Score=56.73 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=55.5
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 89 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~rP 89 (546)
+||.|.|||.+.+ +++|+++|+++.+..|.++.+.+|-.
T Consensus 2 ~~l~V~nL~~~~t----~~~l~~~F~~~G~~~v~~v~i~~~~~------------------------------------- 40 (90)
T 3p5t_L 2 IALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA------------------------------------- 40 (90)
T ss_dssp --CEEESCCTTCC----HHHHHHHHHTTTCCCCCCEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHHhCCCceEEEEEEecCC-------------------------------------
Confidence 7999999999886 79999999998322787887764321
Q ss_pred cccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC
Q 009006 90 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 167 (546)
Q Consensus 90 ~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 167 (546)
..+..|.|||+|.+..+|..|.+.++.. +...++|+.|.
T Consensus 41 ---------------------------------------~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 41 ---------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ---------------------------------------TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ---------------------------------------CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 0123579999999999999999877654 34456777665
Q ss_pred CCC
Q 009006 168 ESR 170 (546)
Q Consensus 168 eP~ 170 (546)
.|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 20
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=0.0011 Score=54.15 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceE-EEEEecC
Q 009006 2 SPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY-RSMVVTN 50 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~-~v~~~~d 50 (546)
|+.......||.|.|||.+.+ +++|+++|+++ |.|. ++.+.+|
T Consensus 2 ss~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~v~i~~~ 45 (99)
T 2div_A 2 SSGSSGMAASLWMGDLEPYMD----ENFISRAFATM--GETVMSVKIIRN 45 (99)
T ss_dssp CCCCCSSSSEEEECSCCTTCC----HHHHHHHHHHT--TCCCCEEEEEEC
T ss_pred CCCCCCCccEEEEeCCCCCCC----HHHHHHHHHHh--CCcceEEEEeec
Confidence 456677889999999999876 79999999997 6677 8877643
No 21
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.00084 Score=54.38 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=33.4
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
...+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CSCCGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 3456789999999999876 78999999997 6788887764
No 22
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.38 E-value=0.0012 Score=54.72 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=62.1
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 83 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~ 83 (546)
...+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|..
T Consensus 8 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------- 50 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLD----EKDLKPLFEEF--GKIYELTVLKDRF------------------------------- 50 (106)
T ss_dssp CCCTTCEEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEECCCCSS-------------------------------
T ss_pred CCCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEecCC-------------------------------
Confidence 3456789999999999887 79999999998 6787776543211
Q ss_pred CCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC-----CC
Q 009006 84 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ-----LV 158 (546)
Q Consensus 84 ~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-----~~ 158 (546)
..+..+.|||+|.+..+|..|.+.++.. ..
T Consensus 51 ---------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 51 ---------------------------------------------TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp ---------------------------------------------SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred ---------------------------------------------CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 0124579999999999999999877653 33
Q ss_pred CceeeecCCC
Q 009006 159 DTWTVSDAPE 168 (546)
Q Consensus 159 ~~~~v~~APe 168 (546)
..+.|+.|-.
T Consensus 86 ~~l~v~~a~~ 95 (106)
T 2dgp_A 86 RPIQVKPADS 95 (106)
T ss_dssp SCCEEEECCC
T ss_pred ceEEEEECCc
Confidence 5567777643
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.38 E-value=0.0013 Score=55.54 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=34.1
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
......+||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEIT----TEDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp CCSTTCEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEc
Confidence 3456789999999999887 79999999998 67888877643
No 24
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.38 E-value=0.0014 Score=54.27 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
...+...||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~ 48 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQS----EEDVLRLFQPF--GVIDECTVL 48 (105)
T ss_dssp CSCCCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 3456789999999999887 79999999997 678888765
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.0012 Score=54.07 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 84 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~ 84 (546)
..+...+|.|+|||.+++ +++|+++|+++ |.|.++.+..|..
T Consensus 13 ~~~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------- 54 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCT----KEELEEICKAH--GTVKDLRLVTNRA-------------------------------- 54 (100)
T ss_dssp SCCCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT--------------------------------
T ss_pred cCCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEECCC--------------------------------
Confidence 346678999999999887 79999999997 6788887763310
Q ss_pred CCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCcee
Q 009006 85 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWT 162 (546)
Q Consensus 85 ~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~ 162 (546)
.+..+.|||+|.+..+|..|.+.++.. +...++
T Consensus 55 ---------------------------------------------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 55 ---------------------------------------------GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp ---------------------------------------------SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred ---------------------------------------------CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 123579999999999999999876543 345567
Q ss_pred eecCCC
Q 009006 163 VSDAPE 168 (546)
Q Consensus 163 v~~APe 168 (546)
|+.|-.
T Consensus 90 v~~a~~ 95 (100)
T 2do4_A 90 VAISNS 95 (100)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 776643
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.36 E-value=0.0016 Score=54.07 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=62.6
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 83 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~ 83 (546)
...+...+|.|.|||.+++ +++|+++|+++ |.|.+|.+..|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------- 52 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPKKMT------------------------------- 52 (107)
T ss_dssp CCSSCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCCCCS-------------------------------
T ss_pred ccCCCCCEEEEeCCCCcCC----HHHHHHHHHcc--CCeEEEEEecCCC-------------------------------
Confidence 3456789999999999887 79999999997 6788886653310
Q ss_pred CCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhc-ccC--CCCc
Q 009006 84 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSL-HAQ--LVDT 160 (546)
Q Consensus 84 ~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~-~~~--~~~~ 160 (546)
......|.|||+|.+..+|..|.+.+ +.. ....
T Consensus 53 --------------------------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 53 --------------------------------------------GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp --------------------------------------------SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred --------------------------------------------CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 01234689999999999999999877 433 3445
Q ss_pred eeeecCCCC
Q 009006 161 WTVSDAPES 169 (546)
Q Consensus 161 ~~v~~APeP 169 (546)
+.|+.|-..
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 677766443
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.36 E-value=0.001 Score=54.17 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=59.3
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 88 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~r 88 (546)
+.||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 39 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT----EEQILDLCSNV--GPVINLKMMFDPQ------------------------------------ 39 (96)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCBCTT------------------------------------
T ss_pred CcEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEeCCC------------------------------------
Confidence 57999999999887 79999999998 6788876543211
Q ss_pred CcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecC
Q 009006 89 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 166 (546)
Q Consensus 89 P~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 166 (546)
.....|.|||+|.+..+|..|.+.++.. +...+.|+.|
T Consensus 40 ----------------------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 40 ----------------------------------------TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp ----------------------------------------TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 0123579999999999999999877553 3455677777
Q ss_pred CCC
Q 009006 167 PES 169 (546)
Q Consensus 167 PeP 169 (546)
-++
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
No 28
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.35 E-value=0.00079 Score=54.60 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=33.1
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.......||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 50 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVR----EEILYELFLQA--GPLTKVTICK 50 (95)
T ss_dssp -CTTGGGEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 3456789999999999877 79999999998 6788887763
No 29
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.34 E-value=0.0014 Score=58.45 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=71.4
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 87 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 87 (546)
++.||.|+|||.+.+ +++|+++|+++ |.|.++.+..|..
T Consensus 1 s~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~~~~~~~----------------------------------- 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDKI----------------------------------- 39 (167)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECTT-----------------------------------
T ss_pred CcceEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCCC-----------------------------------
Confidence 568999999999886 79999999997 6788887763221
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeec
Q 009006 88 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 165 (546)
Q Consensus 88 rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 165 (546)
.....|.|||+|.+.++|..|.+.++.. ....+.+..
T Consensus 40 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 40 -----------------------------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp -----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 0123589999999999999999876543 233455555
Q ss_pred CCCC------CcceeccccchhHHHHHHHHH
Q 009006 166 APES------RELIWNNLNIKFFQRQIRQYV 190 (546)
Q Consensus 166 APeP------~DI~W~Nl~~~~~~r~~R~~~ 190 (546)
|..+ ..+.-.||.....+..++.++
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 5432 337777777665555555543
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.0008 Score=54.66 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEE-EEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS-MVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 84 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v-~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~ 84 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.++ .+.+|..
T Consensus 2 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~~i~~~~~-------------------------------- 43 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEID----EKLLYDTFSAF--GVILQTPKIMRDPD-------------------------------- 43 (96)
T ss_dssp CSCCCEEEEECCCTTCC----HHHHHHHHHTT--SCBSSCCEECCCTT--------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEEcCC--------------------------------
Confidence 35678999999999876 79999999997 556555 4432210
Q ss_pred CCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCcee
Q 009006 85 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWT 162 (546)
Q Consensus 85 ~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~ 162 (546)
.....+.|||+|.+..+|..|.+.++.. +...++
T Consensus 44 --------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 44 --------------------------------------------TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp --------------------------------------------TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred --------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 0134689999999999999999876554 344566
Q ss_pred eecCC
Q 009006 163 VSDAP 167 (546)
Q Consensus 163 v~~AP 167 (546)
|+.|-
T Consensus 80 v~~a~ 84 (96)
T 1x5t_A 80 VSYAF 84 (96)
T ss_dssp EEESC
T ss_pred EEEec
Confidence 66663
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.002 Score=53.06 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=32.7
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
......+|.|.|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMIT 49 (103)
T ss_dssp CSCCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 345679999999999886 79999999998 6788887763
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.32 E-value=0.00089 Score=56.72 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.4
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
+.-+|.|.|||.+.+ +++|+++|+++ |.|.+|.+++
T Consensus 4 ~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 456899999999887 79999999998 7898887763
No 33
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.0014 Score=54.32 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=32.6
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.++.+..|
T Consensus 20 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~ 58 (106)
T 1p27_B 20 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNLD 58 (106)
T ss_dssp BTTBEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCeEEEEEEec
Confidence 34568999999999887 79999999998 78888877643
No 34
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.0014 Score=53.97 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 45678999999999887 79999999998 67888877643
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.0016 Score=53.88 Aligned_cols=39 Identities=10% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
......+||.|.|||.+++ +++|+++|+++ | |.+|.+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 48 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 48 (104)
T ss_dssp CCSSSCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEECCB
T ss_pred CCCCCCCEEEEeCCCCcCC----HHHHHHHHHHC--C-ceEEEEec
Confidence 4456779999999999887 79999999997 6 88887653
No 36
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.30 E-value=0.0018 Score=51.92 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=33.7
Q ss_pred CCCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 2 SPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
+....+..+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 2 ~~~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~~ 42 (90)
T 2dnp_A 2 SSGSSGNTWKIFVGNVSAACT----SQELRSLFERR--GRVIECDVV 42 (90)
T ss_dssp CCCSSCCSCCEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCC----HHHHHHHHHcC--CCEEEEEEE
Confidence 455667889999999999876 79999999998 668777553
No 37
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.29 E-value=0.0016 Score=55.06 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=32.7
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.......||.|.|||.+++ +++|+++|+++ |.|.+|.+.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 50 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVI 50 (116)
T ss_dssp CCSCSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEES
T ss_pred cCCCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeeEEEEE
Confidence 3456789999999999887 79999999997 678888775
No 38
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.0016 Score=53.61 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
......||.|.|||.+++ +++|+++|+++ |.|.++.+..
T Consensus 11 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGID----DERLRKAFSPF--GTITSAKVMM 49 (103)
T ss_dssp CCSSCCCEEEECCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 356789999999999887 79999999987 6788887763
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.28 E-value=0.00081 Score=55.36 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=32.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
........+|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 45 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 45 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEECC
T ss_pred CCcCCCCCEEEEeCCCCCCC----HHHHHHHhhcc--CCEEEEEEE
Confidence 44567789999999999876 79999999997 667776554
No 40
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.0015 Score=53.90 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=31.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
......||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 46 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTS----PDSLRRVFEKY--GRVGDVYIP 46 (103)
T ss_dssp CCSCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECC
T ss_pred CCCCCeEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 345679999999999887 79999999997 678887664
No 41
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.27 E-value=0.001 Score=52.94 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.......||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTS----KKDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp -CCSCTTEEEEECCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEeec
Confidence 3456789999999999886 79999999987 78988888744
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.25 E-value=0.0015 Score=54.64 Aligned_cols=38 Identities=5% Similarity=0.151 Sum_probs=31.7
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
..+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 59 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLN 59 (110)
T ss_dssp CBTTBEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 446678999999999887 79999999998 678887654
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.0021 Score=53.59 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.5
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.....||.|.|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 34578999999999877 79999999997 6788886653
No 44
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.23 E-value=0.0021 Score=54.46 Aligned_cols=36 Identities=6% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
....||.|.|||.+.+ +++|+++|+++ |.|.+|.+.
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~ 40 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETN----EKMLKAVFGKH--GPISEVLLI 40 (116)
T ss_dssp CSCCEEEEECCTTTCC----HHHHHHHHHTS--SCCSEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4578999999999876 79999999997 668888765
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.0015 Score=53.84 Aligned_cols=39 Identities=10% Similarity=0.259 Sum_probs=32.8
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
......||.|.|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp CCSSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEee
Confidence 356689999999999877 79999999997 6788887763
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.22 E-value=0.0021 Score=52.53 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=29.5
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEE
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 44 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~ 44 (546)
...+...+|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CSCCCCSEEEEECCCSSCC----HHHHHHHHTTT--SCBCE
T ss_pred CCCCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCEee
Confidence 4567889999999999887 79999999997 56665
No 47
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.21 E-value=0.0014 Score=52.26 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=31.6
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
+..||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT----AEELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEec
Confidence 468999999999886 79999999998 77888887754
No 48
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.0023 Score=52.73 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
......+||.|.|||.+++ +++|+++|++.| |.|.+|.+.+
T Consensus 4 ~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~~-G~v~~v~i~~ 44 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVD----DGMLYEFFVKVY-PSCRGGKVVL 44 (104)
T ss_dssp CCSSCCCCEEEECCCTTCC----HHHHHHHHHHHC-TTEEEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCC----HHHHHHHHHHhC-CCeEEEEEEE
Confidence 3456789999999999876 799999999933 6788887764
No 49
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0022 Score=53.43 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.....++|.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~i~ 48 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADVY 48 (108)
T ss_dssp CCSCCCEEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEe
Confidence 345689999999999887 79999999998 678777553
No 50
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.0033 Score=50.35 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
..+...||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 40 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREAT----EQEIRSLFEQY--GKVLECDI 40 (90)
T ss_dssp CSSCCEEEEEESCCSSCC----HHHHHHHHHTS--SCEEEEEE
T ss_pred CCCCCeEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEE
Confidence 456789999999999887 79999999997 66777655
No 51
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.17 E-value=0.0021 Score=57.45 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=61.3
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 85 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 85 (546)
.....||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|..
T Consensus 36 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 76 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGLDKM--------------------------------- 76 (156)
T ss_dssp TTTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC---------------------------------
Confidence 34678999999999876 79999999998 6788888764321
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceee
Q 009006 86 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 163 (546)
Q Consensus 86 ~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 163 (546)
.....+.|||+|.+..+|..|.+.++.. ....++|
T Consensus 77 -------------------------------------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 77 -------------------------------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp -------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 0123579999999999999999876543 3445667
Q ss_pred ecCCC
Q 009006 164 SDAPE 168 (546)
Q Consensus 164 ~~APe 168 (546)
+.|..
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 76643
No 52
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.17 E-value=0.0015 Score=55.40 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 37 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~ 73 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFT----DTDLASTFLPF--GNVISAKVF 73 (118)
T ss_dssp CCCSEEEEEECSCTTCC----HHHHHHHTTTS--CEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 45679999999999876 79999999997 778888765
No 53
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.17 E-value=0.0017 Score=58.07 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=71.2
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 87 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 87 (546)
++.||.|+|||.+.+ +++|+++|+++ |.|.++.+..|..
T Consensus 2 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 40 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK----------------------------------- 40 (168)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEeCC-----------------------------------
Confidence 678999999999887 79999999997 6788776542210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeec
Q 009006 88 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 165 (546)
Q Consensus 88 rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 165 (546)
.....|.|||+|.+.++|..|.+.++.. ....+.+..
T Consensus 41 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 41 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 0123579999999999999999866543 233445544
Q ss_pred CC------CCCcceeccccchhHHHHHHHHH
Q 009006 166 AP------ESRELIWNNLNIKFFQRQIRQYV 190 (546)
Q Consensus 166 AP------eP~DI~W~Nl~~~~~~r~~R~~~ 190 (546)
|. ...-|.-.||.....+..++.++
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 43 34457788888776665555543
No 54
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.16 E-value=0.0029 Score=51.54 Aligned_cols=41 Identities=10% Similarity=0.036 Sum_probs=33.8
Q ss_pred CCCCCCCcceEEEcCCCCCCCCCChHHHHH----HHhhhhCCCceEEEEEe
Q 009006 2 SPEVRPQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~----~~F~~~~p~~v~~v~~~ 48 (546)
|+.......+|.|.|||.+.+ +++|+ ++|+++ |.|.+|.+.
T Consensus 2 ss~~~~~~~~l~V~nL~~~~~----~~~l~~~l~~~F~~~--G~v~~v~i~ 46 (96)
T 2dgx_A 2 SSGSSGNGADVQVSNIDYRLS----RKELQQLLQEAFARH--GKVKSVELS 46 (96)
T ss_dssp CCCCCSSCEEEEEESCCTTSC----HHHHHHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCCCCCCEEEEECCCCCCC----HHHHHHHHHHhcccc--CcEEEEEEE
Confidence 456677889999999999887 68888 899987 678888665
No 55
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.16 E-value=0.0021 Score=56.00 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=32.5
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
...+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~ 96 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 96 (140)
T ss_dssp SSCSSCCEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCCcEEEEEeCCCCCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 3456789999999999877 79999999998 678887664
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.0019 Score=52.62 Aligned_cols=39 Identities=8% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 5678999999999877 79999999997 678888876443
No 57
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.13 E-value=0.0023 Score=54.83 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=32.6
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
...+...||.|.|||.+++ +++|+++|+++ |.|.+|.+..
T Consensus 17 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 56 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 56 (126)
T ss_dssp CCCSSSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 3456678999999999876 79999999997 6788886653
No 58
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.13 E-value=0.0016 Score=54.61 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=32.4
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
........||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~ 62 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEII 62 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCC----HHHHHHHGGGT--CCCSCEEEC
T ss_pred ccCCCCCCEEEEECCCCcCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 34456789999999999877 79999999997 667776654
No 59
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.0017 Score=52.86 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=34.8
Q ss_pred ceEEEEeCCHHHHHHHHHhcccCC--CCceeeecCCCCCcce
Q 009006 134 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELI 173 (546)
Q Consensus 134 ~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~APeP~DI~ 173 (546)
|.|||+|+++++|+.|.+.++... ...+++..|+..+|++
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 899999999999999998877654 4568899999999986
No 60
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.12 E-value=0.0032 Score=54.53 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.+...+|.|.|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 43 ~~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~ 80 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 80 (129)
T ss_dssp CCCSSCBCEETCTTSCC----HHHHHHHHTTT--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 45678999999999887 78999999997 6788887764
No 61
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.11 E-value=0.0029 Score=52.12 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
......+||.|.|||.+++ +++|+++|+++ + |.+|.+.+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g-i~~v~i~~~ 49 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTV----QGDIDAIFKDL--S-IRSVRLVRD 49 (103)
T ss_dssp CCSSSCEEEEEESCCTTCC----HHHHHHHTTTS--C-EEEEEEEEC
T ss_pred CCCCCCeEEEEeCCCCCCC----HHHHHHHHHhC--C-ceEEEEeec
Confidence 3456779999999999887 79999999997 5 888887643
No 62
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.11 E-value=0.0021 Score=53.36 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=32.8
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 63 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHY 63 (107)
T ss_dssp CCCCSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 446689999999999887 79999999987 6788887763
No 63
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.0022 Score=51.50 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=32.6
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.......++|.|.|||.+.+ +++|+++|+++ .|.++.+.+|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t----~~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVT----EKNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCC----HHHHHHHHTTS---CCSEEEEEEC
T ss_pred CCCCCCccEEEEECCCCCCC----HHHHHHHHhhC---CceEEEEEEC
Confidence 34456789999999999887 79999999987 4777776643
No 64
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.003 Score=50.84 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=32.3
Q ss_pred CCCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 2 SPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
+........+|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~v~~ 42 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCT----NQELRAKFEEY--GPVIECDI 42 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCC----HHHHHHHHHTT--SCCCEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 344567789999999999886 79999999997 66777654
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.00098 Score=54.40 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=30.2
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 170 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~ 170 (546)
..|.|||+|.+.++|..|.+.++.. ....++|+.|-.|.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 4589999999999999999877644 34557777776554
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.0033 Score=52.73 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=32.1
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
......||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~ 48 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVG----WKKLKEVFSMA--GVVVRADIL 48 (114)
T ss_dssp CCCCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 445678999999999886 79999999997 678888775
No 67
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0034 Score=51.29 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
...+...||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 47 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDIT----EEEMRKLFEKY--GKAGEVFI 47 (99)
T ss_dssp CCCCCTTEEEEESCCTTCC----HHHHHHHTSTT--CCCSEEEE
T ss_pred CcCCCCCEEEEeCCCCCCC----HHHHHHHHhhc--CCeEEEEE
Confidence 3456778999999999877 79999999997 56766654
No 68
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0029 Score=52.42 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEE-EEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR-SMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~-v~~~ 48 (546)
.....++|.|.|||.+.+ +++|+++|+++ |.|.+ |.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~~v~i~ 49 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCS----KEEIVQFFSGL--EIVPNGMTLP 49 (104)
T ss_dssp SCSCCCEEEEESCCTTCC----HHHHHHHTTTC--CEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCcceeEEEE
Confidence 346789999999999887 79999999997 66665 5444
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0056 Score=50.95 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
.....||.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 54 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIR----TKDIEDVFYKY--GAIRDIDL 54 (109)
T ss_dssp CCCSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 45678999999999886 79999999998 67877754
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.003 Score=52.99 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceE
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY 43 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~ 43 (546)
.......||.|.|||.+++ +++|+++|+++ |.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~ 43 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVT----LDDLADFFKQC--GVVK 43 (113)
T ss_dssp CCCCCCCEEEEECCCTTCC----HHHHHHHHTTT--SCBC
T ss_pred ccCCCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEe
Confidence 3456789999999999887 79999999987 4443
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.04 E-value=0.0022 Score=53.05 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=33.7
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTT----QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp CSSSSSEECCBSCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 356789999999999877 79999999997 67888877643
No 72
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.04 E-value=0.00049 Score=58.69 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCC-CceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p-~~v~~v~~~ 48 (546)
....+||.|+|||.+.+ +++|+++|+++-+ +.|.+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~~~~v~~v~i~ 53 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCS----IEDVQNFLSDCTIHDGVAGVHFI 53 (118)
T ss_dssp BCCCCEEEEESCCTTCC----HHHHHHHTTTSCBTTGGGGEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHHcCCccCceeEEEE
Confidence 34679999999999987 7999999999732 126666665
No 73
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0052 Score=50.15 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEE
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 45 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v 45 (546)
....+...||.|.|||.+++ +++|+++|+++.||.|.++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~g~g~v~~~ 47 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTS----EEMIEKEFNNIKPGAVERV 47 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCC----HHHHHHHHHTTSTTCEEEE
T ss_pred ccccCCcCEEEEeCCCCCCC----HHHHHHHHHhcCCcceEEE
Confidence 34556789999999999876 7999999999877777665
No 74
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0047 Score=51.43 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+...||.|.|||.+++ +++|+++|+++ |.|.+|.+.
T Consensus 22 ~~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 58 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIRVF 58 (109)
T ss_dssp CSSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 46688999999999887 79999999998 678877664
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.02 E-value=0.0019 Score=53.09 Aligned_cols=40 Identities=10% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
...+..+||.|.|||.+.+ +++|+++|+++ | |.++.+.+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G-i~~v~i~~~ 53 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPRE 53 (100)
T ss_dssp ------CEEEESCCSSCCS----SSHHHHHSCSS--C-EEEEECSCC
T ss_pred CCCCCCcEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEec
Confidence 3456789999999999987 58899999997 6 888876533
No 76
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.01 E-value=0.00071 Score=59.37 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=30.0
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCc---eEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDT---FYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~---v~~v~~~ 48 (546)
....++|.|.|||.+.+ +++|+++|+++ |. |.+|.++
T Consensus 41 ~~~~~~lfVgnLp~~~t----e~dL~~~F~~~--G~v~~v~~v~i~ 80 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCS----VEDVQNFLSDC--TIHDGAAGVHFI 80 (136)
T ss_dssp CCTTCEEEEESCCTTCC----HHHHHHHTTTC--CCSSSSTTEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcCceeEEEEE
Confidence 45679999999999887 79999999997 44 5666665
No 77
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.01 E-value=0.0047 Score=51.91 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 85 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 85 (546)
.+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~~---------------------------------- 44 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNTP---------------------------------- 44 (115)
T ss_dssp TTCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECST----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeCC----------------------------------
Confidence 45678999999999887 78999999997 778888765210
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceee
Q 009006 86 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 163 (546)
Q Consensus 86 ~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 163 (546)
...|.|||+|.+..+|..|.+.++.. ....+.+
T Consensus 45 ---------------------------------------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 45 ---------------------------------------------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp ---------------------------------------------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred ---------------------------------------------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 11468999999999999999977654 3445677
Q ss_pred ecCCCCCcceeccccchhHHHHHHH
Q 009006 164 SDAPESRELIWNNLNIKFFQRQIRQ 188 (546)
Q Consensus 164 ~~APeP~DI~W~Nl~~~~~~r~~R~ 188 (546)
..|-.+.+- +|+.....+..++.
T Consensus 80 ~~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 80 LYYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp EECCHHHHT--TTSCHHHHHHHHHH
T ss_pred EEecCChhh--hhhhHhHhHHHHHH
Confidence 776543332 55555444444444
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.002 Score=53.06 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=60.4
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 86 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 86 (546)
.+..||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~~~---------------------------------- 45 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVYDRE---------------------------------- 45 (104)
T ss_dssp HHHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEEETT----------------------------------
T ss_pred CCccEEEEeCCCCcCC----HHHHHHHHHhc--CCeeEEEEEeCCC----------------------------------
Confidence 4568999999999887 79999999997 6787887663321
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeee
Q 009006 87 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 164 (546)
Q Consensus 87 ~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 164 (546)
.....|.|||+|.+..+|..|.+.++.. ....++++
T Consensus 46 ------------------------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 46 ------------------------------------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp ------------------------------------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 0123579999999999999999877654 34456777
Q ss_pred cCCCC
Q 009006 165 DAPES 169 (546)
Q Consensus 165 ~APeP 169 (546)
.|-.+
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 66543
No 79
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.98 E-value=0.0049 Score=50.76 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 46 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~ 46 (546)
.....+|.|.|||.+++ +++|+++|+++ |.|.+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 42 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVT----EEILEKAFSQF--GKLERVK 42 (103)
T ss_dssp CCCCCCEEEECCCTTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 34568999999999876 79999999998 6677764
No 80
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.0052 Score=49.73 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 45 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v 45 (546)
....++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~ 45 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQ----WEVLDSLLVQY--GVVESC 45 (96)
T ss_dssp CCSCCCEEEEEECSSSC----HHHHHHHHHHH--SCEEEE
T ss_pred CCCCCEEEEEcCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 44579999999999887 79999999998 677777
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.0026 Score=50.31 Aligned_cols=38 Identities=5% Similarity=0.090 Sum_probs=31.8
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 2 ~~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~ 39 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAIL 39 (85)
T ss_dssp CCCCCEEEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35678999999999887 79999999987 6788887663
No 82
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.96 E-value=0.0044 Score=52.96 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 32 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~ 68 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVD 68 (124)
T ss_dssp CSSCEEEEEESCCSSCC----HHHHHHHHHTT--SCCSEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEE
Confidence 34568999999999876 79999999997 678787765
No 83
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.96 E-value=0.0035 Score=52.37 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=27.7
Q ss_pred CCcceEEEcCCCCC-CCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 7 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 7 ~s~yTV~V~~IP~~-~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
+...||.|.|||.+ ++ +++|+++|+++ |.|.++.+
T Consensus 25 ~~~~~l~V~nl~~~~~t----~~~l~~~F~~~--G~v~~v~i 60 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVK----KSDVETIFSKY--GRVAGCSV 60 (110)
T ss_dssp TCSSEEEECSCCCSSCC----HHHHHHHHGGG--SCCSEEEE
T ss_pred CCCcEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEE
Confidence 34589999999998 66 79999999997 56666543
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.95 E-value=0.0023 Score=49.29 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=25.8
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
+|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 ~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 32 (75)
T 2mss_A 1 KIFVGGLSVNTT----VEDVKHYFEQF--GKVDDAMLM 32 (75)
T ss_dssp CEEEECCCSSCC----HHHHHHHHHTT--SCCSEECCC
T ss_pred CEEEecCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 488999999887 79999999997 667666443
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.003 Score=52.41 Aligned_cols=37 Identities=5% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.+|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~t----e~~L~~~F~~~--G~v~~v~i~ 44 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMR 44 (103)
T ss_dssp CSGGGCEEEECCCTTCC----HHHHHHHHHTS--SCEEEEEEE
T ss_pred cCCCCEEEEECCCCCCC----HHHHHHHHhhc--CCEEEEEEE
Confidence 45679999999999877 79999999997 779888876
No 86
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.95 E-value=0.0017 Score=50.06 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.8
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 1 ~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i 31 (75)
T 1iqt_A 1 KIFVGGLSPDTP----EEKIREYFGGF--GEVESIEL 31 (75)
T ss_dssp CEEESCCCSSCC----HHHHHHHHHHH--SCCSEECC
T ss_pred CEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 689999999887 79999999998 56766644
No 87
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.95 E-value=0.0048 Score=58.07 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=69.5
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 86 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 86 (546)
....||.|.|||.+++ +++|+++|+++ |.|.+|.+++|..
T Consensus 13 ~p~~tlfVgnLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 52 (213)
T 4f02_A 13 YPMASLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRDMI---------------------------------- 52 (213)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEecccC----------------------------------
Confidence 3457999999999887 79999999998 7899998764311
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeee
Q 009006 87 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 164 (546)
Q Consensus 87 ~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 164 (546)
..+..|.|||+|.+..+|..|.+.++.. ....+++.
T Consensus 53 ------------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 53 ------------------------------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 0124689999999999999999876543 22233444
Q ss_pred cCCC--------CCcceeccccchhHHHHHHHH
Q 009006 165 DAPE--------SRELIWNNLNIKFFQRQIRQY 189 (546)
Q Consensus 165 ~APe--------P~DI~W~Nl~~~~~~r~~R~~ 189 (546)
.+.. ...|.=.||..+..+.-++.+
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 123 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 123 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHH
T ss_pred cccccccccccccccceECCcccccHHHHHHHH
Confidence 4332 234666677766555555554
No 88
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0018 Score=50.07 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=27.4
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 2 ~l~v~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 34 (77)
T 1uaw_A 2 KMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 34 (77)
T ss_dssp CEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEEC
T ss_pred EEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEec
Confidence 799999999887 58899999997 6677776653
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.92 E-value=0.0011 Score=53.63 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhh
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 37 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~ 37 (546)
..+...+|.|.|||.+.+ +++|+++|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~ 39 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVS----IDEILDFFYGY 39 (95)
T ss_dssp ----CEEEEEECCCTTCC----HHHHHHHTTTS
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc
Confidence 345679999999999887 79999999987
No 90
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.87 E-value=0.0048 Score=55.42 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=71.8
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 87 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 87 (546)
..+||.|+|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~~---------------------------------- 41 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS----EKDLRELFEQY--GAVYEINVLRDRSQ---------------------------------- 41 (175)
T ss_dssp CCEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEECSS----------------------------------
T ss_pred CceEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEecCCC----------------------------------
Confidence 578999999999887 79999999997 67988887744210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccCC-----CCcee
Q 009006 88 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDTWT 162 (546)
Q Consensus 88 rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-----~~~~~ 162 (546)
| ..+..|.|||+|.+..+|..|.+.++... ...+.
T Consensus 42 ------------~----------------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 42 ------------N----------------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp ------------S----------------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred ------------C----------------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 0 01346899999999999999998765432 22333
Q ss_pred eecC-------CCCCcceeccccchhHHHHHHHHH
Q 009006 163 VSDA-------PESRELIWNNLNIKFFQRQIRQYV 190 (546)
Q Consensus 163 v~~A-------PeP~DI~W~Nl~~~~~~r~~R~~~ 190 (546)
+..+ ++...|.=.||..+..+..++.++
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 3332 233457777887776666666643
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.87 E-value=0.0071 Score=50.70 Aligned_cols=39 Identities=8% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
......||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCCCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 345678999999999877 79999999997 6788887764
No 92
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.85 E-value=0.005 Score=51.44 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+
T Consensus 22 ~~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 59 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 59 (109)
T ss_dssp ----CCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHcc--CCeEEEEEEE
Confidence 34678999999999887 79999999997 7788887764
No 93
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.84 E-value=0.0064 Score=50.75 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
...+...+|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i 63 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQ----ESELNEIFGPF--GPMKEVKI 63 (108)
T ss_dssp --CCSCSEEEECSSCTTCC----HHHHHHHHTTT--SCCCEEEE
T ss_pred CCCCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 3456789999999999887 78999999987 56666543
No 94
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.84 E-value=0.0057 Score=53.26 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
....||.|.|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 40 ~~~~~l~V~nLp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 3458999999999887 79999999998 7788887763
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.0084 Score=49.75 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCc-eEEEEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDT-FYRSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~-v~~v~~~ 48 (546)
..+..+||.|.|||.+.+ +++|+++|+++ |. |.++.+.
T Consensus 4 ~s~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~~v~~v~i~ 42 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKK----REEILEEIAKV--TEGVLDVIVY 42 (109)
T ss_dssp CCCCSEEEEEECCCTTSC----HHHHHHHHHHH--STTEEEEECC
T ss_pred cccCCCEEEEeCCCCcCC----HHHHHHHHHHh--cCCceEEEEE
Confidence 456789999999999877 79999999998 44 7777554
No 96
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.83 E-value=0.0078 Score=49.64 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=32.0
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
...+.+.+|.|+|+|.+.+ +++|++.|+++ |.|.+|.+.
T Consensus 16 ~~~~ps~~l~V~NLp~~~t----e~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVV----EADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp -CCCCCSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 3456789999999999876 79999999997 788888653
No 97
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.82 E-value=0.0017 Score=53.37 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=29.9
Q ss_pred CcceEEEcCCCC------CCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPD------LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~------~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.+.||.|.|||. +.. +++|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~----~~~L~~~F~~~--G~i~~v~i~~d 47 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVL----KKALTSLFSKA--GKVVNMEFPID 47 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHH----HHHHHHHHHTT--SCEEEEECCEE
T ss_pred cCcEEEEeCCCcCChHHHHHH----HHHHHHHHHhc--CCEeEEEEEEc
Confidence 468999999998 554 78899999997 77888876643
No 98
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.0037 Score=52.69 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY 43 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~ 43 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.
T Consensus 5 ~~~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~ 36 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDID----EDEITASFRRF--GPLV 36 (114)
T ss_dssp SSCCCCEEEECCCTTCC----HHHHHHHTTTT--CCCC
T ss_pred CCCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEE
Confidence 45679999999999887 79999999997 5665
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.81 E-value=0.012 Score=47.63 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=30.0
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
..+...+|.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~~ 49 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTIDH 49 (97)
T ss_dssp CCCCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEE
Confidence 345678999999999876 79999999997 66777643
No 100
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.80 E-value=0.0047 Score=53.36 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=34.4
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCCcceecc
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNN 176 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DI~W~N 176 (546)
.|.|||+|.+..+|..|.+.++.. ....++|..|-.++|...+.
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~~ 117 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAED 117 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhcccc
Confidence 478999999999999999887654 34467888888777776543
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.79 E-value=0.0016 Score=52.26 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=28.1
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~ 34 (90)
T 2ki2_A 2 RNIYVGNLVYSAT----SEQVKELFSQF--GKVFNVKLI 34 (90)
T ss_dssp EEEEEEEECTTSS----HHHHTTTHHHH--TCCSEEEEC
T ss_pred cEEEECCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 5899999999887 78999999998 678787765
No 102
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.78 E-value=0.0065 Score=54.13 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=31.3
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+...+|.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 67 ~~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~v~~~~i~ 103 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIP 103 (158)
T ss_dssp CCBCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 35579999999999887 79999999998 678887665
No 103
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.78 E-value=0.0041 Score=52.42 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=27.9
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCC-ceEEE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRS 45 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~-~v~~v 45 (546)
.+..++|.|.|||.+.+ +++|+++|+++ | .|..+
T Consensus 25 p~~~~~l~VgnLp~~~t----e~dL~~~F~~~--G~~v~~v 59 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCS----WQDLKDLAREN--SLETTFS 59 (111)
T ss_dssp CCCCEEEEEECSSCCCC----HHHHHHHHHHH--TCCCSEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHHh--CCeeEEE
Confidence 45678999999999887 79999999998 5 55544
No 104
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.78 E-value=0.0056 Score=56.10 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 86 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 86 (546)
....||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|..
T Consensus 86 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 125 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDYDRS---------------------------------- 125 (177)
T ss_dssp TTCEEEEEECCCSCCC----HHHHHHHHHHT--SCCSEEEECCCTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 4568999999999887 79999999997 6777776653210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeee
Q 009006 87 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 164 (546)
Q Consensus 87 ~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 164 (546)
....|.|||+|.+..+|..|.+.++.. +...+.|+
T Consensus 126 -------------------------------------------g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 126 -------------------------------------------GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp -------------------------------------------SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred -------------------------------------------CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 123578999999999999999877553 34457777
Q ss_pred cCCCCCcceec
Q 009006 165 DAPESRELIWN 175 (546)
Q Consensus 165 ~APeP~DI~W~ 175 (546)
.|..+....|.
T Consensus 163 ~a~~~~~~~~~ 173 (177)
T 2f3j_A 163 LVASQIDLEHH 173 (177)
T ss_dssp EESSGGGGCC-
T ss_pred EecCCCCCCCC
Confidence 77655444443
No 105
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.74 E-value=0.0034 Score=52.74 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
..++.||.|.|||.+.+ +++|+++|+++ |.|.+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i 42 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVLL 42 (111)
T ss_dssp SEEEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 34678999999999876 79999999997 67777644
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.74 E-value=0.003 Score=53.23 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCce-EEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF-YRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v-~~v~~~ 48 (546)
....+||.|.|||.+++ +++|+++|+++ |.| .+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g~v~~~v~i~ 49 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSIT----KMDVLQFLEGI--PVDENAVHVL 49 (114)
T ss_dssp CSCCCEEEEESCCTTSC----HHHHHHHTTTS--CCCSTTEEEC
T ss_pred CCCccEEEEeCcCCcCC----HHHHHHHHHhC--CCcCCeEEEE
Confidence 45679999999999887 79999999997 666 455554
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.012 Score=48.92 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=31.1
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+...+|.|+|||.+.+ +++|+++|+++ |.|.+|.+.
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~V~~v~i~ 48 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMMM 48 (104)
T ss_dssp CCCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEE
Confidence 45678999999999886 79999999997 778887654
No 108
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.73 E-value=0.012 Score=54.87 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=30.6
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
...||.|+|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 27 ~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 62 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG----EDTIRQAFAPF--GPIKSIDMSW 62 (216)
T ss_dssp HHTEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEECC
T ss_pred cCCEEEEECCCCCCC----HHHHHHHHHhC--CCEEEEEEee
Confidence 357999999999986 79999999998 7788887753
No 109
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.72 E-value=0.0038 Score=51.58 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.....++|.|.|||.+.+ +++|+++|+++ | +.+|.+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G-~~~v~i~~ 48 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRAT----ENDIYNFFSPL--N-PMRVHIEI 48 (102)
T ss_dssp CCSSSCEEEEESCCTTCC----HHHHHHSSCSC--C-CSEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHHc--C-ceEEEEEE
Confidence 446778999999999887 79999999986 4 33777663
No 110
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.008 Score=53.30 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.0
Q ss_pred ceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 10 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 10 yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
+||.|+|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 R~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~ 33 (166)
T 3md3_A 1 RVLYVGNLDKAIT----EDILKQYFQVG--GPIANIKIM 33 (166)
T ss_dssp CEEEEEEEETTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CEEEECCCCCcCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 5899999999887 79999999998 678888776
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.72 E-value=0.0046 Score=53.91 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=29.8
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
....||.|.|||.+++ +++|+++|+++ |.|.+|.+.
T Consensus 45 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~ 80 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIP 80 (135)
T ss_dssp GGCCCEEEECCCSSCH----HHHHHHHHGGG--SCCSEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4567999999999876 79999999997 677777654
No 112
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.70 E-value=0.013 Score=47.71 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=30.1
Q ss_pred CCCCCcceEEEcCCCC-CCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 4 EVRPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~-~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
...+...||.|.|||. +.+ +++|+++|+++ |.|.++.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t----~~~L~~~F~~~--G~v~~v~i 55 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 55 (97)
T ss_dssp --CCTTCEEEEESCCSSCCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 3467789999999997 876 79999999997 66776644
No 113
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.70 E-value=0.0051 Score=51.96 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
.+.++|.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 14 r~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 48 (115)
T 3beg_B 14 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 48 (115)
T ss_dssp ---CCEEEEECCSSCC----TTHHHHHHGGG--SCEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 4579999999999887 68899999997 67777755
No 114
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.68 E-value=0.0035 Score=52.20 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=29.9
Q ss_pred CCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCC-CceEEEEE
Q 009006 3 PEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMV 47 (546)
Q Consensus 3 ~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p-~~v~~v~~ 47 (546)
.......++|.|.|||.+.+ +++|+++|+++-+ +.|.+|.+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~t----e~~l~~~F~~~g~~~~v~~v~i 46 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCT----MEDVLNFFSDCRIRNGENGIHF 46 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCC----SHHHHHHTTTSCBTTTTTTEEC
T ss_pred cCCCCCccEEEEeCCCCCCC----HHHHHHHHHhcCCcCCcceEEE
Confidence 34456789999999999987 5899999998632 22444544
No 115
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.67 E-value=0.0066 Score=54.38 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=58.9
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 87 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 87 (546)
...+|.|.|||.+++ +++|+++|+++.+..|.+|.+++|-.
T Consensus 54 ~~~~lfVgnLp~~~t----e~~L~~~F~~~G~i~v~~v~i~~d~~----------------------------------- 94 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT----DQQLIQVIRSIGVYDVVELKFAENRA----------------------------------- 94 (156)
T ss_dssp --CEEEEECCCTTCC----HHHHHHHHHHTTCCCEEEEEEEECTT-----------------------------------
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHCCccEEEEEEEecCC-----------------------------------
Confidence 468999999999887 79999999998322798988874421
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeec
Q 009006 88 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 165 (546)
Q Consensus 88 rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 165 (546)
.....|.|||+|.+..+|..|.+.+... ....+.|..
T Consensus 95 -----------------------------------------tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 95 -----------------------------------------NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp -----------------------------------------TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 0123579999999999999999987554 334566666
Q ss_pred C
Q 009006 166 A 166 (546)
Q Consensus 166 A 166 (546)
|
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 6
No 116
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.66 E-value=0.0071 Score=50.89 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=30.3
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..+|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 27 ~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 27 FRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 48999999999887 79999999987 67888877643
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.64 E-value=0.0086 Score=53.95 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
....+||.|.|||.+++ +++|+++|+++ |.|.+|.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcC--CCEEEEEEEe
Confidence 45567999999999876 79999999998 7788888764
No 118
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.006 Score=49.52 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCCCCcceEEEcCCCC-CCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 4 EVRPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~-~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
...+...||.|.|||. +.+ +++|+++|+++ |.|.++.+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i 43 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 43 (96)
T ss_dssp ----CCEEEEEESSTTSCCC----HHHHHHHHTTT--CCCCEEEE
T ss_pred ccCCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 3456788999999997 776 79999999997 66766644
No 119
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.63 E-value=0.0045 Score=51.96 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=30.0
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.+||.|.|||.+++ +++|+++|+++ |.|.+|.+.+
T Consensus 25 ~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 25 ARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhC--CCEeEEEEEe
Confidence 47999999999887 79999999997 7788887753
No 120
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.62 E-value=0.011 Score=54.10 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.9
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.....||.|.|||.+.+ +++|+++|+++ |.|.+|.+..|
T Consensus 10 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 48 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRD 48 (196)
T ss_dssp CGGGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEEc
Confidence 45678999999999886 79999999998 77888877643
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.62 E-value=0.0062 Score=49.35 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.3
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCCcc
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESREL 172 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DI 172 (546)
.|.|||+|.+..+|..|.+.++.. ....++++.|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 368999999999999999877654 3456778777655554
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.009 Score=48.83 Aligned_cols=36 Identities=8% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
.+...||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 24 ~~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~~ 59 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFAT----EADLIPLFQNF--GFILDFKH 59 (101)
T ss_dssp CSSCCEEEEESCCTTCC----HHHHHHHHHTT--SCCSEEEE
T ss_pred CCCCCEEEEcCCCcccC----HHHHHHHHHhC--CCEEEEEE
Confidence 45678999999999886 79999999987 66655544
No 123
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.62 E-value=0.0034 Score=52.73 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=29.2
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
...++|.|+|||.+.+ +++|+++|+++ .|.+|.++
T Consensus 14 ~~~~~v~V~nLp~~~t----e~dl~~~F~~~---~v~~v~i~ 48 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAM----ENDVRDFFHGL---RVDAVHLL 48 (109)
T ss_dssp HHHHEEEEECCCSSCC----HHHHHHHTTTS---CCCEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHhccC---CeeEEEEE
Confidence 3468999999999887 79999999987 46777775
No 124
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.61 E-value=0.0066 Score=51.71 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=31.3
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 35 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST----AQDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEec
Confidence 358999999999877 79999999997 77888887643
No 125
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.60 E-value=0.0042 Score=55.44 Aligned_cols=101 Identities=8% Similarity=0.147 Sum_probs=67.8
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 87 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~ 87 (546)
.+.||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 40 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTT----EDNLREYFGKY--GTVTDLKIMKDPA----------------------------------- 40 (167)
T ss_dssp GGGEEEECSCCTTCC----HHHHHHHHTTT--CCEEEEECCCCTT-----------------------------------
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEECCC-----------------------------------
Confidence 367999999999887 79999999997 6788886643210
Q ss_pred CCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccCCCCceeeecCC
Q 009006 88 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 167 (546)
Q Consensus 88 rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 167 (546)
.....|.|||+|.+..+|..|.+..+.-+...+.+..+.
T Consensus 41 -----------------------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 41 -----------------------------------------TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAI 79 (167)
T ss_dssp -----------------------------------------TSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECC
T ss_pred -----------------------------------------CCCccceEEEEEccHHHHHHHHhcccccCCeEccccccc
Confidence 013468999999999999999885332233334444332
Q ss_pred ------CCCcceeccccchhHHHHHHHHH
Q 009006 168 ------ESRELIWNNLNIKFFQRQIRQYV 190 (546)
Q Consensus 168 ------eP~DI~W~Nl~~~~~~r~~R~~~ 190 (546)
....|.=.||..+..+.-++.++
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 12346666776665555555543
No 126
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.60 E-value=0.009 Score=48.89 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=28.1
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 169 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 169 (546)
..+.|||+|.+.++|..|.+.++.. ....+.|+.|-.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 3579999999999999999876554 3345667766433
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.014 Score=47.42 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=28.4
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 169 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP 169 (546)
.|.|||+|.+..+|..|.+.++.. +...+.|+.|-++
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 478999999999999999877654 3456777776443
No 128
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.51 E-value=0.0059 Score=48.71 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=29.6
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 170 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~ 170 (546)
.|.|||+|.+..+|..|.+.++.. ....++++.||...
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 368999999999999999877654 34567788887543
No 129
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.48 E-value=0.012 Score=48.03 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=27.1
Q ss_pred eEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 11 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 11 TV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 2 ~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~ 33 (101)
T 2hvz_A 2 KVYVGNLGTGAG----KGELERAFSYY--GPLRTVWIA 33 (101)
T ss_dssp EEEEECCCSSCS----HHHHHHHHHHH--CCCSEEEEE
T ss_pred EEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 799999999876 79999999998 667777665
No 130
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.47 E-value=0.0077 Score=50.41 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHH---HHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVD---SYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSA 81 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~---~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~ 81 (546)
...+..+|.|.|||.+++ +++|+ ++|+++ |.|.++.+..|...
T Consensus 11 r~~~~~~l~V~nLp~~~~----~~~l~~~~~~F~~~--G~i~~v~i~~~~~~---------------------------- 56 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLA----DPEVLKRPEYFGKF--GKIHKVVINNSTSY---------------------------- 56 (111)
T ss_dssp CCCCSSCEEEEEECTTTC----CHHHHHSTTTTTTT--SCEEEEEEECCSSC----------------------------
T ss_pred cccCCCEEEEECCCCCCC----HHHHHHHHHHhhcc--CCEEEEEEecCCCc----------------------------
Confidence 345678999999999987 57888 999987 77988887643210
Q ss_pred CCCCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCC
Q 009006 82 GKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVD 159 (546)
Q Consensus 82 ~~~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~ 159 (546)
|+ .....|.|||+|.+.++|..|.+.++.. ...
T Consensus 57 ------------------~~---------------------------~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 57 ------------------AG---------------------------SQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp ------------------CS---------------------------SSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ------------------Cc---------------------------cCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 00 1134689999999999999999976543 344
Q ss_pred ceeeecCC
Q 009006 160 TWTVSDAP 167 (546)
Q Consensus 160 ~~~v~~AP 167 (546)
.++|+.|-
T Consensus 92 ~l~V~~a~ 99 (111)
T 2cpi_A 92 TLKASLGT 99 (111)
T ss_dssp EEEEESCC
T ss_pred EEEEEecc
Confidence 56676663
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.013 Score=51.85 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.....++|.|+|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 83 ~~~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp CCTTCEEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCCCceEEECCCCCCCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 345678999999999886 79999999987 77888877643
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.01 Score=50.07 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=30.5
Q ss_pred CCCcceEEEcCCCCC-CCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~-~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+...+|.|+|||.+ .+ +++|+++|+++ |.|.+|.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~t----e~~L~~lF~~f--G~V~~v~i~ 59 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYS----DSAVLKLAEPY--GKIKNYILM 59 (112)
T ss_dssp SCCCCEEEEESCCCSSCC----SHHHHTTTTTT--SCCSEEEEE
T ss_pred CCCCCEEEEeCCCCccCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 456789999999997 76 58899999997 778888663
No 133
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.46 E-value=0.017 Score=56.06 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 84 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~ 84 (546)
...+.+||.|.|||.+++ +++|+++|+++ |.|.+|.+..
T Consensus 18 ~~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~----------------------------------- 56 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDIT----EEDFKRLFERY--GEPSEVFINR----------------------------------- 56 (261)
T ss_dssp SSCGGGEEEEESCCTTCC----HHHHHHHTGGG--CCCSEEEEET-----------------------------------
T ss_pred CCCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEeC-----------------------------------
Confidence 345668999999999887 79999999997 6677765510
Q ss_pred CCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCcee
Q 009006 85 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWT 162 (546)
Q Consensus 85 ~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~ 162 (546)
..|.|||+|.+..+|..|.+.+... ....+.
T Consensus 57 -----------------------------------------------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 57 -----------------------------------------------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp -----------------------------------------------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred -----------------------------------------------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 0279999999999999998876543 345677
Q ss_pred eecCCCCCcceeccccchhHHHHHHHH
Q 009006 163 VSDAPESRELIWNNLNIKFFQRQIRQY 189 (546)
Q Consensus 163 v~~APeP~DI~W~Nl~~~~~~r~~R~~ 189 (546)
+..|....-|.=.||.....+..++.+
T Consensus 90 v~~a~~~~~l~v~nl~~~~t~~~l~~~ 116 (261)
T 3sde_A 90 IRFATHGAALTVKNLSPVVSNELLEQA 116 (261)
T ss_dssp EEECCCSSEEEEESCCTTCCHHHHHHH
T ss_pred eeecccCCcccccCCCCCCCHHHHHHH
Confidence 888888888888899877666665554
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.44 E-value=0.019 Score=50.68 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
..+...||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 69 ~~~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 106 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGN----KTELERAFGYY--GPLRSVWVA 106 (150)
T ss_dssp SSTTSCEEEEESCCSCCS----CHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEe
Confidence 345679999999999987 58899999998 678887664
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.38 E-value=0.015 Score=47.52 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhh
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 37 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~ 37 (546)
......+|.|.|||.+++ +++|+++|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~ 39 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSAT----EETLQEVFEKA 39 (101)
T ss_dssp CSCCCSEEEEESCCTTCC----HHHHHHHCSSC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhC
Confidence 445689999999999876 79999999985
No 136
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.37 E-value=0.0048 Score=54.23 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=28.1
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
....++|.|.|||.+.+ +++|+++|+++ | +.+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~t----e~dL~~~F~~~--G-i~~v~i~ 78 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKAT----ENDIYNFFSPL--N-PVRVHIE 78 (139)
T ss_dssp --CCCCEECCSCCTTCC----HHHHHHHHCSC--C-CSEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEE
Confidence 45678999999999887 79999999997 4 4466554
No 137
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.36 E-value=0.016 Score=53.97 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
...++|.|+|||.+.+ +++|+++|+++ |.|.++.+..|
T Consensus 123 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLS----DDDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp TTSCEEEEECCCTTCC----HHHHHHHHTTS--SCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCcCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 3458999999999876 79999999997 78988888744
No 138
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.34 E-value=0.0083 Score=51.73 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=29.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceE--EEEEe
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY--RSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~--~v~~~ 48 (546)
....+.+|.|+|||.+.+ +++|+++|+++ + |. +|.++
T Consensus 38 ~~~~~~~lfVgnLp~~~t----e~dL~~~F~~~--~-i~~~~v~i~ 76 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCT----KEEIVQFFSGL--E-IVPNGITLP 76 (126)
T ss_dssp CSSSCCEEEEECCCTTCC----HHHHHHHTTTS--C-EEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHhcC--C-ceeeEEEEE
Confidence 345689999999999987 79999999997 3 54 66554
No 139
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.28 E-value=0.016 Score=46.55 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=58.8
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 85 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 85 (546)
......+.|+||+.+.+ ++.|++.|.++ |.|.++++..
T Consensus 4 ~~~~~wL~VgNL~~~~t----e~~L~~lF~q~--G~V~~~~l~~------------------------------------ 41 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQID----GPTLRTLCMQH--GPLVSFHPYL------------------------------------ 41 (89)
T ss_dssp CCCCCEEEEECCCTTCC----CHHHHHHHHHH--SCEEEEEEET------------------------------------
T ss_pred CCccceEEEeCCCccCC----HHHHHHHHHhh--CCEEEEEEcC------------------------------------
Confidence 46789999999999887 69999999999 7788876520
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceee
Q 009006 86 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 163 (546)
Q Consensus 86 ~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 163 (546)
+.|.|||+|.++.+|..|.+.++.. ....++|
T Consensus 42 ----------------------------------------------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 42 ----------------------------------------------NQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp ----------------------------------------------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ----------------------------------------------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 2489999999999999999987654 3445777
Q ss_pred ecC
Q 009006 164 SDA 166 (546)
Q Consensus 164 ~~A 166 (546)
..|
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 777
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.26 E-value=0.024 Score=50.40 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.....+|.|+|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 86 ~~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 124 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILRD 124 (168)
T ss_dssp TTTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEEC
T ss_pred cCCCCCEEEeCCCCCCC----HHHHHHhhhcC--CcEEEEEEEEc
Confidence 45678999999999876 79999999987 67888877643
No 141
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.26 E-value=0.021 Score=47.10 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=58.7
Q ss_pred CcceEEEcCCCCCCCCCC--hHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009006 8 QQFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 85 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~--~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~ 85 (546)
...||.|.|||.+..++- .+++|+++|+++ |.|.++.+..+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~----------------------------------- 56 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEE----------------------------------- 56 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCB-----------------------------------
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCC-----------------------------------
Confidence 368999999998774210 368899999997 67877754300
Q ss_pred CCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCC-cee
Q 009006 86 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVD-TWT 162 (546)
Q Consensus 86 ~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~-~~~ 162 (546)
..+..|.|||+|.+..+|..|.+.++.. ... .++
T Consensus 57 -------------------------------------------~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 57 -------------------------------------------DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp -------------------------------------------TTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred -------------------------------------------CCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 0123489999999999999999977653 333 577
Q ss_pred eecCCCC
Q 009006 163 VSDAPES 169 (546)
Q Consensus 163 v~~APeP 169 (546)
|..|-+-
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 7777543
No 142
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.029 Score=45.09 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEE
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 45 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v 45 (546)
......+|.|.|||.+.+ +++|+++|+++ |.|.+|
T Consensus 4 ~~~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVD----SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp CCTTCCEEEEECCCTTCC----HHHHHHHGGGT--SCEEEE
T ss_pred ccCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 345678999999999887 79999999997 667665
No 143
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.23 E-value=0.0089 Score=51.61 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEE--EEEe
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR--SMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~--v~~~ 48 (546)
....||.|.|||.+.+ +++|+++|+++ |.|.. |.++
T Consensus 21 ~~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~v~~~~v~i~ 58 (131)
T 2m2b_A 21 NANDTIILRNLNPHST----MDSILGALAPY--AVLSSSNVRVI 58 (131)
T ss_dssp CCCCEEEECSCCTTCC----SHHHHHHHGGG--CCCCTTTEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeEEEE
Confidence 4567999999999987 68999999998 56643 5554
No 144
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.21 E-value=0.012 Score=46.07 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=27.2
Q ss_pred cceEEEcCCCCCCCCCC--hHHHHHHHhhhhCCCceEEEEE
Q 009006 9 QFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~--~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
+.||.|.|||.+..++. .+++|+++|+++ |.|.++.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i 39 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFY 39 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEe
Confidence 46899999998774210 268899999987 67877644
No 145
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.20 E-value=0.033 Score=46.48 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 166 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 166 (546)
+..|.|||+|.+..+|..|.+.++.. ....+.|+.|
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34689999999999999999877653 3345666655
No 146
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.19 E-value=0.0047 Score=52.82 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=25.7
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCce
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF 42 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v 42 (546)
....++|.|.|||.+.+ +++|+++|+++ |.|
T Consensus 22 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v 52 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAE----NKHVIDFFKKL--DIV 52 (124)
T ss_dssp CCCCCEEEEECCCTTCC----HHHHHHHSCSS--CBC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCc
Confidence 34569999999999887 79999999987 444
No 147
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.17 E-value=0.024 Score=50.64 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
....+|.|+|+|.+.+ +++|+++|+++ |.|.++.+..
T Consensus 93 ~~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~~~~ 129 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCT----ENDIRVMFSSF--GQIEECRILR 129 (175)
T ss_dssp GGGSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCeEEEcCCCCcCC----HHHHHHHHHhC--CCEEEEEEEE
Confidence 4678999999999876 79999999998 6788887763
No 148
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.14 E-value=0.013 Score=56.05 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=30.7
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
...||.|.|||.+++ +++|+++|+++-...|.+|.+++|
T Consensus 67 ~~~~lfVgnL~~~~t----e~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCC----HHHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHHHCCcceEEEEEEec
Confidence 567899999999887 799999999972117999988754
No 149
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.14 E-value=0.019 Score=51.38 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=31.7
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
....+|.|+|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 92 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTTCEEEECCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCceEEEEEec
Confidence 4468999999999886 79999999987 67888877643
No 150
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.13 E-value=0.0079 Score=49.18 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=27.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 167 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 167 (546)
...|.|||+|.+..+|..|.+ ++.. ....+.|..|-
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 456899999999999999998 6543 34456676663
No 151
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.09 E-value=0.033 Score=54.40 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=45.4
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCCcceeccccchhHHHHHHHHH
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYV 190 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DI~W~Nl~~~~~~r~~R~~~ 190 (546)
.|.|||+|.+..+|..|.+.++.. ....+.+..+|...-|.=.||..+..+.-++.++
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f 116 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELV 116 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence 368999999999999999876543 3456778888888888889998877666666543
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.09 E-value=0.029 Score=49.57 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.....+|.|+|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 85 ~~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 122 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILV 122 (167)
T ss_dssp GGTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred cCCCCcEEECCCCCcCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 34678999999999876 79999999998 6788887764
No 153
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.06 E-value=0.031 Score=46.33 Aligned_cols=85 Identities=8% Similarity=-0.013 Sum_probs=60.7
Q ss_pred CCCcceEEEcCCC--CCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009006 6 RPQQFAVLVRDLP--DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 83 (546)
Q Consensus 6 ~~s~yTV~V~~IP--~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~ 83 (546)
.....+|.++|+. .++.+ +.+++|++.|+++ |.|.+|.+..|.+.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~d-d~~~dl~~~f~~~--G~V~~v~i~~~~~~------------------------------ 51 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDE-DLEVETKEECEKY--GKVGKCVIFEIPGA------------------------------ 51 (105)
T ss_dssp GSCCSEEEEESSSCSCCC----CHHHHHHHGGGG--SCEEEEEEEECSSC------------------------------
T ss_pred CCCCCEEEEEcCCChHHhhH-HHHHHHHHHHHhc--CCEEEEEEecCCCC------------------------------
Confidence 4567899999996 33433 3478999999988 78999988754210
Q ss_pred CCCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCce
Q 009006 84 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW 161 (546)
Q Consensus 84 ~~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~ 161 (546)
.....|.|||+|.+..+|..|.+.++.. ....+
T Consensus 52 ---------------------------------------------~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 52 ---------------------------------------------PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp ---------------------------------------------CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ---------------------------------------------CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 0123589999999999999999988765 34456
Q ss_pred eeecCCC
Q 009006 162 TVSDAPE 168 (546)
Q Consensus 162 ~v~~APe 168 (546)
.+..|++
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 6777753
No 154
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.00 E-value=0.05 Score=51.50 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=31.7
Q ss_pred CCCCcceEEEcCCCC-CCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 5 VRPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~-~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
..+...||.|.|||. +.+ +++|+++|+++ |.|.+|.+.
T Consensus 30 ~~~~~~~l~V~nLp~~~~t----e~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp GCCCCSEEEEESCCTTTCC----HHHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCCCEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEEE
Confidence 346689999999999 776 79999999998 678887664
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.95 E-value=0.023 Score=45.49 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=25.0
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhh
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 37 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~ 37 (546)
..+...||.|.|||.+.+ +++|+++|+++
T Consensus 4 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~ 32 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVT----ADDLRQLFGDR 32 (93)
T ss_dssp CCCCCCCEEEECCCTTCC----HHHHHHHHHHT
T ss_pred CCCCCcEEEEeCCCCCCC----HHHHHHHHHHc
Confidence 456778999999999886 78999999886
No 156
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=95.90 E-value=0.02 Score=53.03 Aligned_cols=35 Identities=6% Similarity=0.204 Sum_probs=30.5
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.+||.|.|||.+.+ +++|+++|+++ |.|.+|.+.+
T Consensus 109 ~~~l~V~nLp~~~t----~~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCC----HHHHHHHHhcC--CCEEEEEEEE
Confidence 58999999999876 79999999997 7798888774
No 157
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.89 E-value=0.059 Score=50.32 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=30.0
Q ss_pred CCcceEEEcCCC-CCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 7 PQQFAVLVRDLP-DLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP-~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
++..||.|.||| .+++ +++|++.|+++ |.|.+|.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~----~~~L~~~F~~~--G~v~~v~i~ 38 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN----CDRVFNVFCLY--GNVEKVKFM 38 (205)
T ss_dssp CCCSEEEEECCCTTTCC----HHHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 467899999999 6776 78999999997 788888664
No 158
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.87 E-value=0.0051 Score=56.81 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=32.9
Q ss_pred CcceEEEcCCCC-CCCCCChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 8 QQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 8 s~yTV~V~~IP~-~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
++.||.|+|||. +.+ +++|+++|+++ |.|.+|.+.+|.
T Consensus 2 ~~~~l~v~nlp~~~~~----~~~l~~~F~~~--G~i~~v~i~~~~ 40 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKILFNK 40 (198)
T ss_dssp CCCEEEEECCCSSSCC----HHHHHHHHHTT--CCCSEEECSTTC
T ss_pred CCcEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEEEeCC
Confidence 568999999999 776 79999999997 678899888765
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=95.73 E-value=0.04 Score=50.41 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=59.5
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 86 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 86 (546)
....+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 112 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~v~~~~~~~~~~---------------------------------- 151 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKDSA---------------------------------- 151 (198)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTB--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccEEEEeecCC----------------------------------
Confidence 4669999999999876 79999999997 6788887764311
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeee
Q 009006 87 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 164 (546)
Q Consensus 87 ~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 164 (546)
.....|.|||+|.+..+|..|.+.++.. ....+.+.
T Consensus 152 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 152 ------------------------------------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp ------------------------------------------TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 0133689999999999999999877654 33456666
Q ss_pred cC
Q 009006 165 DA 166 (546)
Q Consensus 165 ~A 166 (546)
.|
T Consensus 190 ~a 191 (198)
T 2yh0_A 190 RA 191 (198)
T ss_dssp ES
T ss_pred EC
Confidence 65
No 160
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.70 E-value=0.046 Score=53.62 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=70.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 84 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~ 84 (546)
......||.|+|||.+.+ +++|+++|+++ |.|.+|.+..|.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------- 78 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVADSLK-------------------------------- 78 (292)
T ss_dssp -----CEEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEECTT--------------------------------
T ss_pred cCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC--------------------------------
Confidence 346689999999999887 79999999998 6788887653210
Q ss_pred CCCCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCcee
Q 009006 85 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWT 162 (546)
Q Consensus 85 ~~~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~ 162 (546)
...|.|||+|.+..+|..|.+ +... +...+.
T Consensus 79 ----------------------------------------------~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 79 ----------------------------------------------KNFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp ----------------------------------------------SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred ----------------------------------------------CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 124899999999999999995 3322 233456
Q ss_pred eecCCCCCcceeccccchhHHHHHHHHHH
Q 009006 163 VSDAPESRELIWNNLNIKFFQRQIRQYVV 191 (546)
Q Consensus 163 v~~APeP~DI~W~Nl~~~~~~r~~R~~~~ 191 (546)
+..++ ..-|.=.||.....+..++.++.
T Consensus 112 v~~~~-~~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 112 VSHLT-ECTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp EEECC-SCEEEEECCCTTCCHHHHHHHHH
T ss_pred EEECC-CCEEEEECCCCCCCHHHHHHHHH
Confidence 66664 56677788877766666666544
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.70 E-value=0.038 Score=50.48 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
+...+|.|+|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEeec
Confidence 3458999999999876 79999999987 77888877643
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.55 E-value=0.036 Score=51.87 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.6
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
...+|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 102 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 102 GVGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp CTTEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred ccccceECCcccccH----HHHHHHHHhhc--CCeEEEEeec
Confidence 456899999999887 79999999998 7788887763
No 163
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.54 E-value=0.026 Score=45.46 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=27.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 167 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 167 (546)
..|.|||+|.+..+|..|.+.++.. ....+.++.|.
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 52 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3589999999999999999876543 34457777773
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.45 E-value=0.054 Score=56.84 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=61.8
Q ss_pred cceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009006 9 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 88 (546)
Q Consensus 9 ~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~~r 88 (546)
..||.|.|||.+++ +++|+++|.++ |.|.+|.++.|..
T Consensus 102 ~~~lfV~nL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~------------------------------------ 139 (437)
T 3pgw_S 102 FKTLFVARVNYDTT----ESKLRREFEVY--GPIKRIHMVYSKR------------------------------------ 139 (437)
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEeeccCC------------------------------------
Confidence 47999999999886 79999999997 7788887764410
Q ss_pred CcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecC
Q 009006 89 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 166 (546)
Q Consensus 89 P~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 166 (546)
.....|.|||+|.+..+|..|.+.++.. ....+.|..|
T Consensus 140 ----------------------------------------tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 140 ----------------------------------------SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred ----------------------------------------CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 0123579999999999999999887654 3345667766
Q ss_pred CCCCccee
Q 009006 167 PESRELIW 174 (546)
Q Consensus 167 PeP~DI~W 174 (546)
-....=.|
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 54333344
No 165
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.13 E-value=0.095 Score=51.01 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.4
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCCc
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRE 171 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~D 171 (546)
.|.|||+|.+..+|..|.+.++.. ....++|+.|-...|
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 52 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 478999999999999999877654 234567777754444
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.13 E-value=0.055 Score=52.79 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=61.7
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 86 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~~l~~L~~~r~~~~~~Le~~~~~~~~~k~~~~~~~ 86 (546)
....+|.|+|+|.++.+ +++|+++|+++ |.|.++.+..|..
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~~---------------------------------- 222 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQD---------------------------------- 222 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECSS----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECCC----------------------------------
Confidence 46789999999998755 89999999987 6788887653210
Q ss_pred CCCcccccccCCCCccccHHHHHHHHHHHHhHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeee
Q 009006 87 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 164 (546)
Q Consensus 87 ~rP~~r~g~~~~~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 164 (546)
....|.|||+|.+..+|..|.+.++.. ....+.+.
T Consensus 223 -------------------------------------------g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 223 -------------------------------------------GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp -------------------------------------------CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred -------------------------------------------CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 123589999999999999999887654 33456777
Q ss_pred cCCCCC
Q 009006 165 DAPESR 170 (546)
Q Consensus 165 ~APeP~ 170 (546)
.|....
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 775443
No 167
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.11 E-value=0.0052 Score=55.42 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=28.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 166 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 166 (546)
...|.|||+|.+..+|..|.+.++.. ....+.+..|
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 45789999999999999999977643 3345667766
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.10 E-value=0.053 Score=48.03 Aligned_cols=35 Identities=9% Similarity=0.216 Sum_probs=28.6
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
...+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.
T Consensus 86 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~ 120 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVR----PKEFEEFFSQW--GTIIDAQLM 120 (167)
T ss_dssp HCEEEEEEEECTTCC----HHHHHHHHHTT--SCCSEEECC
T ss_pred CCCeEEECCCCCCCC----HHHHHHHHHhC--ccEEEEEEE
Confidence 356899999999887 78999999987 667777654
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.84 E-value=0.22 Score=44.70 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=27.7
Q ss_pred CceEEEEeCCHHHHHHHHHhcccCCC----CceeeecCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAP 167 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP 167 (546)
.+.|||+|.+.++|..|.+.++...- ..++|+.|-
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 37899999999999999998876542 456777764
No 170
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.77 E-value=0.26 Score=39.53 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=26.7
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 168 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 168 (546)
.+.|||+|.+..+|..|.+.++.. ....+.|+.|-.
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 468999999999999999876543 344566666643
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=94.70 E-value=0.029 Score=44.85 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=32.0
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
...++.+|+.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 45 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMT----AEELQQFFCQY--GEVVDVFIPK 45 (89)
T ss_dssp -----CCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCS
T ss_pred CCCCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 4567899999999999987 79999999998 7899998875
No 172
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.45 E-value=0.32 Score=43.01 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=36.0
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC------CCCcceeccccchhHHHHHHHHH
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP------ESRELIWNNLNIKFFQRQIRQYV 190 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP------eP~DI~W~Nl~~~~~~r~~R~~~ 190 (546)
.|.|||+|.+.++|..|. .++.. ....+.+..+. .+.-|.=.||.....+..++..+
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 589999999999999998 44332 22334444332 23556667777665555555544
No 173
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.16 E-value=0.071 Score=44.22 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=34.0
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
.+...+|.|.|||.+.+ +++|+++|+++ |+|.+|.++.|
T Consensus 13 ~~~~~~LfV~nLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSC----HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 46778999999999886 79999999998 78999998854
No 174
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=94.15 E-value=0.15 Score=49.21 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=31.0
Q ss_pred CcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 8 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 8 s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
...+|.|.|+|.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 95 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVS----NELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCC----HHHHHHHHHhc--CCeEEEEeeeC
Confidence 457999999999876 79999999987 67888877643
No 175
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.06 E-value=0.091 Score=41.03 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=33.8
Q ss_pred CCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 4 EVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 4 ~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
...+...||.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 7 ~~~~~~~~l~V~~l~~~~t----~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTIT----ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSCSSCCCEEEECCTTTSC----HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCCCccEEEEcCCCCCCC----HHHHHHHHHhC--CCEeEEEEEC
Confidence 3456778999999999876 79999999997 6799998874
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.04 E-value=0.17 Score=42.58 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=27.5
Q ss_pred CCcceEEE--cCCCCCCCCCChHHHHHHHhhhhCCCceEEEEE
Q 009006 7 PQQFAVLV--RDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 7 ~s~yTV~V--~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
....++.| .|+|.+.+ +++|+++|+++ |.|.+|.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~t----e~~L~~~F~~f--G~v~~v~i 59 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALLM 59 (114)
T ss_dssp SCCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEEC
T ss_pred CCCCEEEEECCCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 34578999 55998876 79999999998 67877643
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=93.98 E-value=0.33 Score=45.77 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCC-ceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~-~v~~v~~~ 48 (546)
.+...||.|+|+|.+.+ +++|+++|+++ | .|.++.+.
T Consensus 148 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 185 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFF 185 (229)
T ss_dssp CCSCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEEEEEEC
T ss_pred CCCCCEEEEeCCCccCC----HHHHHHHHHHc--CCCeeEEEEE
Confidence 34579999999999876 79999999998 6 78777654
No 178
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=93.97 E-value=0.15 Score=44.39 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 166 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 166 (546)
...|.|||+|.+..+|..|.+.++.. ....+.|..|
T Consensus 90 ~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 90 RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999877654 2334556555
No 179
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.72 E-value=0.18 Score=48.20 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCCcceEEEcCCCCCCCCC-----ChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~-----~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
..+..||.|.|||.++.+. ..+++|+++|+++ |.|.+|.++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~ 176 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYV 176 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEE
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEE
Confidence 4567899999999876200 0278999999998 788888765
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.71 E-value=0.14 Score=47.62 Aligned_cols=35 Identities=9% Similarity=-0.077 Sum_probs=27.7
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCce--EEEEE
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF--YRSMV 47 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v--~~v~~ 47 (546)
+...||.|+|||.+.+ +++|+++|+++ |.| .++.+
T Consensus 121 ~p~~~l~v~NLp~~~t----~~~L~~~F~~~--G~v~~~~v~~ 157 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVT----EENFFEICDEL--GVKRPTSVKV 157 (205)
T ss_dssp CCCSEEEEEEECTTCC----HHHHHHHHHHH--TCCCCSEEEE
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEE
Confidence 4457899999999876 79999999997 555 56644
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=93.61 E-value=0.14 Score=49.98 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCcceEEEcCCCCC-CCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~-~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.....+|.|+|||.+ .+ +++|+++|+++ |.|.+|.+.+
T Consensus 207 ~~~~~~l~v~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i~~ 245 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLD----ENLLRESFEGF--GSIEKINIPA 245 (292)
T ss_dssp CCTTTEEEEEEECTTTCC----HHHHHHHHGGG--SCEEEEECCS
T ss_pred CCCCceEEEECCCcccCC----HHHHHHHHhcc--CCeeEEEEEe
Confidence 456789999999998 65 79999999997 7788886653
No 182
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.55 E-value=0.28 Score=44.57 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=22.9
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhh
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 37 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~ 37 (546)
..++||.|.|||.+.+ +++|+++|+++
T Consensus 2 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~ 28 (198)
T 2yh0_A 2 AMARRLYVGNIPFGIT----EEAMMDFFNAQ 28 (198)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHHHH
T ss_pred CceeEEEEcCCCCCCC----HHHHHHHHHHH
Confidence 3578999999999887 79999999987
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.39 E-value=0.064 Score=42.41 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=32.3
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
....||.|.|||.+++ +++|+++|+++ |.|.++.+..|
T Consensus 3 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEEecC
Confidence 4578999999999887 79999999998 67888887743
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.38 E-value=0.56 Score=39.94 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=28.1
Q ss_pred eEEEEeCCHHHHHHHHHhcccCCC----CceeeecCCCCC
Q 009006 135 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPESR 170 (546)
Q Consensus 135 ~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~APeP~ 170 (546)
.|||+|.+..+|..|.+.++...- ..++|..|-.++
T Consensus 64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 599999999999999998876542 357788775444
No 185
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=93.34 E-value=0.33 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=27.1
Q ss_pred ceEEEEeCCHHHHHHHHHhcccCCC----CceeeecCCC
Q 009006 134 GAALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPE 168 (546)
Q Consensus 134 ~~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~APe 168 (546)
..|||+|.+..+|..|.+.++...- ..++++.|-.
T Consensus 67 fqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 67 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred cEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3599999999999999998876532 4567777753
No 186
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.22 E-value=0.076 Score=45.36 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCC--CceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP--DTFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p--~~v~~v~~~~d 50 (546)
....++|.|+|||.+.+ +++|++||+++-+ +.|.+|.+++|
T Consensus 20 ~~~~~~v~V~nLp~~~t----e~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 20 KENQVIVRMRGLPFTAT----AEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CCSCCEEEECSCCTTCC----HHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhhCCccCCcceEEEEEC
Confidence 35678999999999887 7999999999854 34678888765
No 187
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.07 E-value=0.12 Score=43.80 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=34.0
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.++.|
T Consensus 27 ~~~ps~~LfVgNLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp CSSCCSEEEEESCCTTCC----HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred cCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEeCC
Confidence 446678999999999876 79999999997 78999988753
No 188
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.05 E-value=0.13 Score=42.12 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=33.5
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
..+...+|.|+|||.+.+ +++|+++|+++ |.|.+|.+..|
T Consensus 11 ~~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp CSSCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEETT
T ss_pred cCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEECC
Confidence 345678999999999876 79999999997 78999987753
No 189
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=93.04 E-value=0.095 Score=42.59 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecC
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 50 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d 50 (546)
......||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMD----ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp CEEEEEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEEC
Confidence 345678999999999887 79999999998 78999988754
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=92.88 E-value=0.29 Score=40.20 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=37.9
Q ss_pred HHHHHHhHHHHHHH-hhhhc-----------cCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC
Q 009006 111 EKIKEIIPKLEAEQ-KITLK-----------EKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 167 (546)
Q Consensus 111 ~~l~~l~~~I~~~~-~~~~~-----------~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 167 (546)
+..+.+.+++.++- ++... .+..|.|||+|.+..+|..|.+.++.. ....+.++.+|
T Consensus 34 ~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 34 EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 33445556666655 44311 134799999999999999999887654 33445666665
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.67 E-value=0.38 Score=39.89 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHHhHHHHHHHhhhh--------ccCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCCCCcceecc
Q 009006 112 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNN 176 (546)
Q Consensus 112 ~l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APeP~DI~W~N 176 (546)
+.+++++++.++-++.. +....|.|||+|.+..+|..|.+.++.. ....+.+..|.+..|..++.
T Consensus 35 ~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 35 VLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp HHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred HHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 34555666665443321 1235799999999999999999887654 34567788887666665544
No 192
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.88 E-value=0.14 Score=42.06 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=32.8
Q ss_pred CCCcceEEEcCCCC-CCCCCChHHHHHHHhhhhCCCceEEEEEec
Q 009006 6 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~-~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 49 (546)
.....+|.|.|||. +.+ +++|+++|+++ |.|.+|.++.
T Consensus 12 ~~p~~~l~V~nLp~~~~t----e~dL~~lF~~f--G~V~~v~i~~ 50 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNL----RYQLLQLVEPF--GVISNHLILN 50 (102)
T ss_dssp CCCCCEEEEESCCCSSSH----HHHHHTTTGGG--SCEEEEEECS
T ss_pred CCCCCEEEEeCCCCCcCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 44678999999999 876 79999999998 7899998874
No 193
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=89.99 E-value=0.38 Score=40.34 Aligned_cols=56 Identities=23% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHhHHHHHHHhhhhc--------cCCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCC
Q 009006 112 KIKEIIPKLEAEQKITLK--------EKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 167 (546)
Q Consensus 112 ~l~~l~~~I~~~~~~~~~--------~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 167 (546)
..+++++++.++-++... ....|.|||+|.+..+|..|.+.++.. ....+.++.+|
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 345666677766555421 224699999999999999999988765 23344555443
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=88.64 E-value=0.79 Score=37.64 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=27.4
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccCC--CCceeeecCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 167 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 167 (546)
..|.|||+|++..+|..|.+.++... ...+++..+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 46899999999999999999887652 3345555544
No 195
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.52 E-value=0.9 Score=37.04 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=27.7
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccCCCCceeeecCC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 167 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 167 (546)
+..|.|||+|.+..+|..|.+.........++|..|-
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 3468999999999999999987554444456666653
No 196
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=87.45 E-value=0.49 Score=36.79 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=32.4
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhh----C----CC-ceEEEEEecC
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----PD-TFYRSMVVTN 50 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~----~----p~-~v~~v~~~~d 50 (546)
+...+||.|.|||.+.+ +++|+++|+++ - |+ .|.++.+..|
T Consensus 3 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp SGGGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 45679999999999886 79999999997 2 11 6888887643
No 197
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=84.69 E-value=0.2 Score=41.82 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEE
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 44 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~ 44 (546)
..+...+|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 3 ~~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 36 (116)
Confidence 346778999999999887 68899999997 55554
No 198
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=82.27 E-value=1.6 Score=42.04 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.+...||.|+|||.+.+ +++|+++|+++ |.|.+|.+.
T Consensus 204 ~~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETN----ELMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 45678999999999876 79999999997 788888776
No 199
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=82.06 E-value=1.1 Score=38.45 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=31.1
Q ss_pred ceEEEcCC----CCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 10 FAVLVRDL----PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 10 yTV~V~~I----P~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
-.|.|.|+ |.+.. ++.|++||+++ |+|.++.++.|-.
T Consensus 3 ~kI~VgnL~~~~~~~tt----e~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ----DISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCC----HHHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC
Confidence 36899999 98876 79999999997 7888888887753
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=80.89 E-value=1.8 Score=39.13 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCC-ceEEEEEec
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVT 49 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~-~v~~v~~~~ 49 (546)
.+...||.|+|+|.+.+ +++|+++|+++ | .|.++.+..
T Consensus 117 ~~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~~v~~v~i~~ 155 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFFQ 155 (198)
T ss_dssp CCCCCEEEECCCCTTCC----HHHHHHHHHHT--TSCCCEEEESS
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHHc--CCCceEEEEEe
Confidence 35589999999999876 79999999998 6 788887754
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=78.53 E-value=4.7 Score=40.50 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.1
Q ss_pred ceEEEEeCCHHHHHHHHHhcccC
Q 009006 134 GAALVFFTSRVAAASAAQSLHAQ 156 (546)
Q Consensus 134 ~~AFVtF~s~~~a~~a~q~~~~~ 156 (546)
|.|||+|++.++|+.|.+.+...
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 69999999999999999887653
No 202
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.03 E-value=2.1 Score=32.83 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhc
Q 009006 132 QLGAALVFFTSRVAAASAAQSL 153 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~ 153 (546)
..|.|||+|.+..+|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3589999999999999999876
No 203
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=76.51 E-value=3.5 Score=34.50 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=28.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 168 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 168 (546)
+..|.|||+|++..+|..|.+.+... ....+.|..|-.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 45789999999999999999876543 334566666643
No 204
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.40 E-value=1.4 Score=34.30 Aligned_cols=37 Identities=19% Similarity=-0.023 Sum_probs=24.3
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccCCCCceeeecCCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPE 168 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~APe 168 (546)
..|.|||+|++..+|+.+......-+...+.+..|..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 5789999999999997654332222344566666643
No 205
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.64 E-value=3.7 Score=33.23 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=25.7
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC----CCCceeeecCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 167 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 167 (546)
.|.|||+|++..+|..|.+.++.. ....+.|..|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 689999999999999998865421 33455666654
No 206
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.18 E-value=5.3 Score=32.57 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCcceEEEcCCCCCCCCCChHHHHHHHhhhh---CCCceEEEEEe
Q 009006 7 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI---YPDTFYRSMVV 48 (546)
Q Consensus 7 ~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~---~p~~v~~v~~~ 48 (546)
...-+|.|+|+|.+.. ++.|+-||++- ..|.|.+|..-
T Consensus 6 ~~~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCCCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred cCccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEEc
Confidence 4567999999999875 68999999983 45678877653
No 207
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=70.79 E-value=2.6 Score=35.29 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=27.7
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 168 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 168 (546)
.|.|||+|.+..+|..|.+.++.. ....+.+..+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 489999999999999999998765 334455666553
No 208
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=70.10 E-value=2.8 Score=32.85 Aligned_cols=35 Identities=20% Similarity=-0.009 Sum_probs=22.6
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccCCCCceeeecC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDA 166 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~A 166 (546)
..|.|||+|++..+|..+......-+...+.+..|
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEEC
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEc
Confidence 57899999999999984433212223445556655
No 209
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.86 E-value=3.7 Score=33.43 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=26.7
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC----CCCceeeecCCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPE 168 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~APe 168 (546)
.+.|||+|++..+|..|.+.++.. ....+.|..|-.
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 478999999999999999876532 334566666643
No 210
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.20 E-value=5.1 Score=32.85 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.7
Q ss_pred CceEEEEeCCHHHHHHHHHhcccC----CCCceeeecCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 167 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 167 (546)
.|.|||+|++..+|..|.+.+... ....+.|..|-
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 589999999999999999865431 23455566653
No 211
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=66.77 E-value=4.7 Score=33.70 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=33.8
Q ss_pred CCcceEEEcCC--CCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 7 PQQFAVLVRDL--PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 7 ~s~yTV~V~~I--P~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
+...+|.++|+ |.++.+ +.+++|++.|+++ |.|.+|.++.|..
T Consensus 18 ~ps~vl~L~Nm~~~~el~d-dleedl~eef~k~--G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDD-DLEGEVTEECGKF--GAVNRVIIYQEKQ 62 (118)
T ss_dssp HSCCEEEEESCSCGGGCCT-THHHHHHHHHTTT--SCEEEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHH-HHHHHHHHHHhcc--CCEeEEEEeecCC
Confidence 35789999998 445543 4678999999987 7899999988753
No 212
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=66.49 E-value=5.1 Score=30.70 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.6
Q ss_pred CCceEEEEeCCHHHHHHHHHhccc
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHA 155 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~ 155 (546)
..|.|||+|.+.++|..|. .++.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 3799999999999999998 5543
No 213
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.41 E-value=5 Score=33.67 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CceEEEEeCCHHHHHHHHHhccc----CCCCceeeecCC
Q 009006 133 LGAALVFFTSRVAAASAAQSLHA----QLVDTWTVSDAP 167 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q~~~~----~~~~~~~v~~AP 167 (546)
.|.|||+|++..+|..|.+.+.. -....+.|..|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 58999999999999999886542 233456666653
No 214
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=63.06 E-value=6.4 Score=34.49 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=27.2
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEE
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 45 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v 45 (546)
.....+|.|+|||.+.+ +++|+++|+++ |.|..+
T Consensus 96 ~~~~~~l~v~nlp~~~t----~~~l~~~F~~~--g~v~~~ 129 (175)
T 1fje_B 96 VRAARTLLAKNLSFNIT----EDELKEVFEDA--LEIRLV 129 (175)
T ss_dssp TGGGGEEEEESCCSSCC----HHHHHHHCTTC--SEEEEE
T ss_pred cccCCEEEEeCCCCCCC----HHHHHHHHHhc--CeEEEe
Confidence 34678999999999876 79999999986 555444
No 215
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.83 E-value=11 Score=31.78 Aligned_cols=43 Identities=12% Similarity=-0.026 Sum_probs=34.0
Q ss_pred CCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
.-+.---|.|.|+|.+..+ .++|++.|+++ |+|..|.+..|-.
T Consensus 14 ~~~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGAK 56 (121)
T ss_dssp SCCCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTCS
T ss_pred cccCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCCC
Confidence 4456677899999998344 89999999996 6799888877653
No 216
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=61.84 E-value=2.2 Score=35.12 Aligned_cols=36 Identities=28% Similarity=0.179 Sum_probs=26.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecC
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 166 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 166 (546)
...|.|||+|.+..+|..|.+.++.. ....++|+.|
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 45789999999999999998866543 2334555555
No 217
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=52.46 E-value=34 Score=22.47 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHHHhHHHH
Q 009006 102 RVDAIEYYNEKIKEIIPKLE 121 (546)
Q Consensus 102 kvd~i~~~~~~l~~l~~~I~ 121 (546)
|-|-|.|+++++..+.++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44778888888888888775
No 218
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.05 E-value=5.7 Score=33.42 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHh
Q 009006 131 KQLGAALVFFTSRVAAASAAQS 152 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~ 152 (546)
+..|.|||+|.+..+|..|.+.
T Consensus 66 r~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 66 RPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CEEEEEEECCSSHHHHHHHHTT
T ss_pred CEeeEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999875
No 219
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=51.55 E-value=12 Score=30.37 Aligned_cols=43 Identities=7% Similarity=-0.024 Sum_probs=31.5
Q ss_pred CcceEEEcCC--CCCCCCC----ChHHHHHHHhhhhCCCceEEEEEecCcc
Q 009006 8 QQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNNK 52 (546)
Q Consensus 8 s~yTV~V~~I--P~~~~~~----~~~~~l~~~F~~~~p~~v~~v~~~~d~~ 52 (546)
....|.++|+ |.++.++ ...++|++.|+++ |.|.+|.+..|..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 4578889998 6666541 1346788999987 7899999987753
No 220
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.36 E-value=11 Score=29.94 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=22.7
Q ss_pred ceEEEEeCCHHHHHHHHHhcccC--CCCceeeecC
Q 009006 134 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 166 (546)
Q Consensus 134 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 166 (546)
+.+||||++.++|..|.+ +... ....++|..|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 348999999999999988 4433 2345666655
No 221
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.22 E-value=55 Score=26.53 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=18.2
Q ss_pred cCCCCcccc------HHHHHHHHHHHHhHHHHHHHh
Q 009006 96 LGLLGKRVD------AIEYYNEKIKEIIPKLEAEQK 125 (546)
Q Consensus 96 ~~~~g~kvd------~i~~~~~~l~~l~~~I~~~~~ 125 (546)
|..||..++ .++.++.++++++.++.+.+.
T Consensus 50 CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 50 CPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp CTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666776544 355666666666666665443
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=42.46 E-value=20 Score=32.98 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=28.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhcccC--CCCceeeecCCC
Q 009006 132 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 168 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~APe 168 (546)
..|.+||.|++..+|..|.+.+... ....+.+..+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3589999999999999999998765 344566666653
No 223
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.33 E-value=57 Score=26.00 Aligned_cols=45 Identities=9% Similarity=-0.020 Sum_probs=31.9
Q ss_pred CCCCCCCcceEEEcCCCCCC---CCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 2 SPEVRPQQFAVLVRDLPDLP---KGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~---~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
|..-....+.+.|+-.++.- .....+++|+++|+++ |.|.+|.++
T Consensus 3 ~~~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~ 50 (100)
T 2d9o_A 3 SGSSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLS 50 (100)
T ss_dssp CCCCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEE
T ss_pred CCcCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEc
Confidence 34456678899998766421 0112389999999998 789999887
No 224
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=41.08 E-value=24 Score=29.19 Aligned_cols=35 Identities=6% Similarity=-0.072 Sum_probs=27.3
Q ss_pred CCCcceEEEcCCCCCCCCCChHHHHHHHhhhhCCCceEEEEEe
Q 009006 6 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 48 (546)
Q Consensus 6 ~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 48 (546)
.....||.|.|+ +++ +++|+++|+++ |.|.+|.+.
T Consensus 36 ~~~~~~lfVgnl--~~t----e~~L~~~F~~~--G~I~~v~i~ 70 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMT----PTLLRGAFSPF--GNIIDLSMD 70 (121)
T ss_dssp CCCCCEEEEECS--SCC----HHHHHHHHSTT--CCCSCEEEE
T ss_pred CCCCCEEEEcCC--CCC----HHHHHHHHHcc--CCEEEEEEe
Confidence 346789999995 343 79999999998 667777765
No 225
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=40.12 E-value=5.7 Score=31.60 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.2
Q ss_pred CCceEEEEeCCHHHHHHHHH
Q 009006 132 QLGAALVFFTSRVAAASAAQ 151 (546)
Q Consensus 132 ~~~~AFVtF~s~~~a~~a~q 151 (546)
..|.|||+|.+..+|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 46899999999999999988
No 226
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=39.62 E-value=42 Score=28.69 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=39.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHhcccC------------CC---------CceeeecCCCCCcceeccccchhHHHHHHHH
Q 009006 131 KQLGAALVFFTSRVAAASAAQSLHAQ------------LV---------DTWTVSDAPESRELIWNNLNIKFFQRQIRQY 189 (546)
Q Consensus 131 ~~~~~AFVtF~s~~~a~~a~q~~~~~------------~~---------~~~~v~~APeP~DI~W~Nl~~~~~~r~~R~~ 189 (546)
+..|.|||+|.+..+|..|.+..... .. ........+....|.-.||.....+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 45799999999999999998654311 00 0011122334566788899887777777765
Q ss_pred HHH
Q 009006 190 VVY 192 (546)
Q Consensus 190 ~~~ 192 (546)
+..
T Consensus 91 F~~ 93 (158)
T 2kn4_A 91 FEK 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 227
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.35 E-value=28 Score=28.14 Aligned_cols=40 Identities=5% Similarity=0.106 Sum_probs=27.6
Q ss_pred CCCcceEEEcCCCC--CCCCC-----ChHHHHHHHhhhhCCCceEEEEE
Q 009006 6 RPQQFAVLVRDLPD--LPKGQ-----SRKEQVDSYFKAIYPDTFYRSMV 47 (546)
Q Consensus 6 ~~s~yTV~V~~IP~--~~~~~-----~~~~~l~~~F~~~~p~~v~~v~~ 47 (546)
.....||+|+|+.. ++.+. ..+++|+++|+++ |.|.+|.+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 35578999999943 22110 1247899999987 77888855
No 228
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.20 E-value=30 Score=27.48 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=31.8
Q ss_pred CCCCcceEEEcCCCCCCCCCChH----HHHHHHhhhhCCCceEEEEEecCc
Q 009006 5 VRPQQFAVLVRDLPDLPKGQSRK----EQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 5 ~~~s~yTV~V~~IP~~~~~~~~~----~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
.-|.|=||+|+-.|..-.++..+ .+|.+.|.++ |.|..+.++.|-
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 45889999999887421111223 6688889887 689999888765
No 229
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.78 E-value=92 Score=25.06 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCCCcccccccCCC-CccccHHHHHHHHHHHHhHHHHHHHhhh
Q 009006 52 KEANKIYEELEGYKKKLARAEAVYAESK--SAGKPEGTRPTIKTGFLGLL-GKRVDAIEYYNEKIKEIIPKLEAEQKIT 127 (546)
Q Consensus 52 ~~l~~L~~~r~~~~~~Le~~~~~~~~~k--~~~~~~~~rP~~r~g~~~~~-g~kvd~i~~~~~~l~~l~~~I~~~~~~~ 127 (546)
.+++.|..+++++.++++.++.+..... +...|.+.+- +.+. .....+.+-.++++++|+.+++++|.+.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKV------lH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKV------LHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEE------EEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCee------eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888877765321 1112221111 1111 1223344456788888888888888765
No 230
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.29 E-value=37 Score=27.62 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=29.4
Q ss_pred ceEEEEeCCHHHHHHHHHh-cccCCCCceeeecCC--CCCcceeccc
Q 009006 134 GAALVFFTSRVAAASAAQS-LHAQLVDTWTVSDAP--ESRELIWNNL 177 (546)
Q Consensus 134 ~~AFVtF~s~~~a~~a~q~-~~~~~~~~~~v~~AP--eP~DI~W~Nl 177 (546)
+.|.|||.+...|+.+.+. -|.-+...+.|.+.| +|+-+.-.+|
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl 94 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGL 94 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecC
Confidence 8999999999999888876 444445566665544 3444444444
No 231
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=35.66 E-value=18 Score=23.46 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 009006 396 SCIAPLIIPFGVVYFALG 413 (546)
Q Consensus 396 s~i~Plil~~~~~yf~l~ 413 (546)
+.+.|+++.++.+||++.
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788888888888753
No 232
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=29.77 E-value=77 Score=25.90 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=29.0
Q ss_pred CcceEEEcCC--CCCCCCC----ChHHHHHHHhhhhCCCceEEEEEecCc
Q 009006 8 QQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNN 51 (546)
Q Consensus 8 s~yTV~V~~I--P~~~~~~----~~~~~l~~~F~~~~p~~v~~v~~~~d~ 51 (546)
....|.++|+ |.+..+. ..+++|++.|+++ |.|.+|.+..|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~ 53 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS 53 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC
Confidence 4567888988 4444332 2456778888876 789999887664
No 233
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.12 E-value=30 Score=27.68 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=0.0
Q ss_pred CceEEEEeCCHHHHHHHHH
Q 009006 133 LGAALVFFTSRVAAASAAQ 151 (546)
Q Consensus 133 ~~~AFVtF~s~~~a~~a~q 151 (546)
...+||||++.++|..|.+
T Consensus 58 ~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH
T ss_pred cCcEEEEEcChHHHHHHHh
No 234
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.85 E-value=84 Score=25.90 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=36.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCCCChHHHHHHHhhhhC---CCceEEEEEecCcc
Q 009006 2 SPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY---PDTFYRSMVVTNNK 52 (546)
Q Consensus 2 ~~~~~~s~yTV~V~~IP~~~~~~~~~~~l~~~F~~~~---p~~v~~v~~~~d~~ 52 (546)
|.++.-+++||-+-|||..+. +..++.+.+... +|.+.++.++-|++
T Consensus 14 s~~~~~~~rtiaL~~ipDtvn----darIr~lve~~~~i~~g~i~KI~L~pDH~ 63 (117)
T 2l9w_A 14 SRNSKELETLICLFPLSDKVS----PSLICQFLQEEIHINEKDIRKILLVSDFN 63 (117)
T ss_dssp CCCTTTTTSCEEEECCCTTCC----HHHHHHHHHHHTCCCTTTCSEEEEETTTT
T ss_pred ccCCccCCcEEEEecCCCCCC----HHHHHHHHhhhhccCccceeEEEEecCCC
Confidence 344455699999999998776 789999988862 46788888888875
No 235
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.81 E-value=67 Score=26.08 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred eEEEcCCCCCC-CCCChHHHHHHHhhhhCCC-------ceEEEEEecCcch
Q 009006 11 AVLVRDLPDLP-KGQSRKEQVDSYFKAIYPD-------TFYRSMVVTNNKE 53 (546)
Q Consensus 11 TV~V~~IP~~~-~~~~~~~~l~~~F~~~~p~-------~v~~v~~~~d~~~ 53 (546)
|+.|+|+|.++ .+.+.++++++.|+++-|. +..+|.+.|+..+
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~ 57 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPL 57 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTT
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChH
No 236
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.58 E-value=2.7e+02 Score=20.84 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhhh
Q 009006 106 IEYYNEKIKEIIPKLEAEQKIT 127 (546)
Q Consensus 106 i~~~~~~l~~l~~~I~~~~~~~ 127 (546)
|+-++++|.+.+.+|.++|...
T Consensus 42 I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666554
No 237
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.04 E-value=1.5e+02 Score=24.38 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHhHHHHHHHhh
Q 009006 104 DAIEYYNEKIKEIIPKLEAEQKI 126 (546)
Q Consensus 104 d~i~~~~~~l~~l~~~I~~~~~~ 126 (546)
+.|..++++++.++.+|+..+..
T Consensus 36 ~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 36 DKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999876543
Done!