BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009008
         (546 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
 pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
          Length = 148

 Score = 35.4 bits (80), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 87  TSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDND 138
           +SDPYVTV + G    RT  I  + +PVW ++F+    +S+  +   V D D
Sbjct: 37  SSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87


>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
           Ttha0370 From Thermus Thermophilus Hb8
 pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
           Ttha0370 From Thermus Thermophilus Hb8
 pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
           Ttha0370 From Thermus Thermophilus Hb8
          Length = 180

 Score = 28.9 bits (63), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 290 GDLLKIKSQEGV----RVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLL 345
           G + +++++EGV    R+L+    DPT  S+LG    G     DE  R  +    V    
Sbjct: 85  GGVFEVETEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYPR--VYAAG 142

Query: 346 CPRSAGKGHSFVKKQEVGTIYTH 368
             R    GH+ +   +   +  H
Sbjct: 143 VARGKVPGHAIISAGDGAYVAVH 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,334,943
Number of Sequences: 62578
Number of extensions: 745650
Number of successful extensions: 1502
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1500
Number of HSP's gapped (non-prelim): 3
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)