Query 009008
Match_columns 546
No_of_seqs 372 out of 2783
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 19:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 4E-108 8E-113 896.8 43.6 510 31-541 4-592 (868)
2 PLN02270 phospholipase D alpha 100.0 1E-100 2E-105 838.9 42.2 482 36-540 3-523 (808)
3 PLN02352 phospholipase D epsil 100.0 1.8E-91 3.8E-96 765.5 40.9 443 38-539 7-476 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 9.3E-80 2E-84 670.0 28.9 483 26-541 61-591 (887)
5 PLN02866 phospholipase D 100.0 3.6E-48 7.8E-53 432.0 26.1 210 210-466 320-550 (1068)
6 PRK12452 cardiolipin synthetas 100.0 1.2E-31 2.7E-36 292.0 19.0 232 214-541 134-369 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.8E-30 3.9E-35 282.2 19.3 228 214-541 110-343 (483)
8 cd04015 C2_plant_PLD C2 domain 100.0 1.7E-28 3.7E-33 228.4 15.8 153 36-188 2-158 (158)
9 PRK11263 cardiolipin synthase 100.0 4.1E-28 8.9E-33 257.5 18.1 225 215-541 3-231 (411)
10 cd04016 C2_Tollip C2 domain pr 99.9 3.8E-23 8.1E-28 183.5 14.6 118 40-187 1-121 (121)
11 cd08379 C2D_MCTP_PRT_plant C2 99.9 8.3E-22 1.8E-26 176.1 13.8 115 42-183 1-125 (126)
12 cd04013 C2_SynGAP_like C2 doma 99.9 2.8E-21 6.1E-26 176.3 16.1 124 40-194 10-145 (146)
13 cd08682 C2_Rab11-FIP_classI C2 99.9 2.3E-21 5E-26 173.6 13.2 117 43-186 1-126 (126)
14 cd04042 C2A_MCTP_PRT C2 domain 99.9 7.4E-21 1.6E-25 169.0 15.1 119 43-189 2-121 (121)
15 COG1502 Cls Phosphatidylserine 99.8 1.8E-20 3.8E-25 202.1 18.0 230 217-541 57-295 (438)
16 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4.9E-20 1.1E-24 164.0 14.2 119 43-187 2-121 (121)
17 cd08400 C2_Ras_p21A1 C2 domain 99.8 8E-20 1.7E-24 163.7 15.4 119 41-189 4-124 (126)
18 cd04019 C2C_MCTP_PRT_plant C2 99.8 8.1E-20 1.8E-24 168.5 14.1 121 42-189 1-133 (150)
19 cd08681 C2_fungal_Inn1p-like C 99.8 6.6E-20 1.4E-24 162.0 11.7 116 41-187 1-118 (118)
20 cd08678 C2_C21orf25-like C2 do 99.8 3.9E-19 8.5E-24 159.2 14.4 122 43-192 1-124 (126)
21 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.3E-19 7.2E-24 159.8 13.5 119 42-188 1-126 (127)
22 cd04044 C2A_Tricalbin-like C2 99.8 4.5E-19 9.7E-24 157.7 13.8 121 41-189 2-124 (124)
23 cd08377 C2C_MCTP_PRT C2 domain 99.8 8.7E-19 1.9E-23 154.9 14.4 117 41-187 1-118 (119)
24 cd08378 C2B_MCTP_PRT_plant C2 99.8 6.3E-19 1.4E-23 156.8 12.3 112 43-187 2-119 (121)
25 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.3E-18 2.8E-23 154.8 14.1 118 42-186 1-120 (121)
26 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.9E-18 4E-23 152.2 14.5 113 42-188 1-115 (116)
27 PHA03003 palmytilated EEV memb 99.8 1.7E-18 3.8E-23 182.3 16.9 142 250-464 31-172 (369)
28 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-18 2.9E-23 153.9 13.0 120 41-187 1-121 (121)
29 cd04014 C2_PKC_epsilon C2 doma 99.8 2.2E-18 4.7E-23 155.6 14.5 126 39-189 2-130 (132)
30 KOG1030 Predicted Ca2+-depende 99.8 4.5E-19 9.8E-24 161.7 9.9 97 38-161 3-100 (168)
31 cd08677 C2A_Synaptotagmin-13 C 99.8 8.9E-19 1.9E-23 153.7 10.4 101 38-167 11-118 (118)
32 cd08395 C2C_Munc13 C2 domain t 99.8 1.5E-18 3.4E-23 153.7 11.9 101 42-169 1-112 (120)
33 cd04036 C2_cPLA2 C2 domain pre 99.8 2.9E-18 6.4E-23 151.9 13.2 113 43-187 2-117 (119)
34 PRK09428 pssA phosphatidylseri 99.8 2.8E-18 6E-23 183.9 14.8 167 218-464 23-195 (451)
35 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.3E-18 9.2E-23 153.6 13.5 119 42-187 1-132 (133)
36 cd04024 C2A_Synaptotagmin-like 99.8 4.7E-18 1E-22 152.1 13.5 122 41-187 1-128 (128)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 5.4E-18 1.2E-22 151.0 13.6 116 43-185 2-122 (123)
38 cd08688 C2_KIAA0528-like C2 do 99.8 2.3E-18 4.9E-23 150.5 10.4 101 43-169 1-109 (110)
39 cd08375 C2_Intersectin C2 doma 99.8 8.2E-18 1.8E-22 152.7 14.3 114 41-187 15-135 (136)
40 cd08373 C2A_Ferlin C2 domain f 99.8 8.8E-18 1.9E-22 150.5 14.2 106 85-193 12-121 (127)
41 cd04050 C2B_Synaptotagmin-like 99.8 4.3E-18 9.4E-23 147.5 11.4 98 43-169 2-102 (105)
42 cd08381 C2B_PI3K_class_II C2 d 99.8 4.7E-18 1E-22 151.4 11.8 103 38-167 10-121 (122)
43 cd08685 C2_RGS-like C2 domain 99.8 3.2E-18 6.8E-23 151.9 10.2 104 37-167 8-119 (119)
44 cd04028 C2B_RIM1alpha C2 domai 99.8 6.1E-18 1.3E-22 154.8 12.3 110 37-171 25-140 (146)
45 cd08387 C2A_Synaptotagmin-8 C2 99.8 5.6E-18 1.2E-22 151.1 11.2 103 40-168 15-123 (124)
46 cd08394 C2A_Munc13 C2 domain f 99.7 9.5E-18 2.1E-22 148.7 12.1 97 41-168 2-100 (127)
47 cd08385 C2A_Synaptotagmin-1-5- 99.7 9.5E-18 2.1E-22 149.5 11.5 104 39-168 14-123 (124)
48 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.2E-17 2.6E-22 149.5 11.9 105 39-168 13-125 (125)
49 cd04046 C2_Calpain C2 domain p 99.7 4E-17 8.7E-22 146.2 15.2 121 40-189 2-123 (126)
50 cd04039 C2_PSD C2 domain prese 99.7 1.3E-17 2.8E-22 145.4 11.3 96 41-159 1-99 (108)
51 cd04045 C2C_Tricalbin-like C2 99.7 1.8E-17 3.9E-22 147.3 12.0 104 41-171 1-105 (120)
52 cd08393 C2A_SLP-1_2 C2 domain 99.7 6.8E-18 1.5E-22 151.0 9.4 104 40-168 14-125 (125)
53 cd04041 C2A_fungal C2 domain f 99.7 1.3E-17 2.9E-22 145.9 10.3 100 41-168 1-107 (111)
54 PHA02820 phospholipase-D-like 99.7 3.8E-17 8.1E-22 174.6 15.9 204 250-541 26-243 (424)
55 cd04018 C2C_Ferlin C2 domain t 99.7 1.9E-17 4.2E-22 152.5 11.1 104 42-158 1-107 (151)
56 cd04017 C2D_Ferlin C2 domain f 99.7 8.1E-17 1.8E-21 146.0 14.4 118 42-190 2-134 (135)
57 cd04010 C2B_RasA3 C2 domain se 99.7 4.5E-17 9.8E-22 149.7 12.1 103 43-173 2-126 (148)
58 cd08680 C2_Kibra C2 domain fou 99.7 3.5E-17 7.7E-22 146.0 10.8 103 39-167 12-124 (124)
59 KOG1028 Ca2+-dependent phospho 99.7 1.3E-16 2.8E-21 170.2 16.9 200 37-271 163-373 (421)
60 cd08382 C2_Smurf-like C2 domai 99.7 7.5E-17 1.6E-21 143.8 12.5 116 43-185 2-122 (123)
61 cd04051 C2_SRC2_like C2 domain 99.7 2.8E-17 6.1E-22 146.7 9.7 113 42-183 1-125 (125)
62 cd08392 C2A_SLP-3 C2 domain fi 99.7 3.3E-17 7.1E-22 147.2 10.2 104 40-168 14-128 (128)
63 cd04031 C2A_RIM1alpha C2 domai 99.7 6.9E-17 1.5E-21 144.0 11.1 102 40-168 15-125 (125)
64 cd04027 C2B_Munc13 C2 domain s 99.7 1.3E-16 2.8E-21 143.1 12.8 113 42-184 2-126 (127)
65 cd04052 C2B_Tricalbin-like C2 99.7 9.2E-17 2E-21 140.6 11.2 100 85-190 10-111 (111)
66 cd04011 C2B_Ferlin C2 domain s 99.7 1.1E-16 2.4E-21 140.0 11.6 98 41-169 4-110 (111)
67 cd04049 C2_putative_Elicitor-r 99.7 1E-16 2.2E-21 142.9 11.3 102 41-169 1-108 (124)
68 cd04030 C2C_KIAA1228 C2 domain 99.7 8.9E-17 1.9E-21 143.8 10.6 103 40-168 15-127 (127)
69 cd04040 C2D_Tricalbin-like C2 99.7 1.7E-16 3.6E-21 139.5 12.1 104 43-172 1-106 (115)
70 cd04043 C2_Munc13_fungal C2 do 99.7 3.2E-16 7E-21 140.0 14.1 112 42-187 2-120 (126)
71 cd08521 C2A_SLP C2 domain firs 99.7 9.8E-17 2.1E-21 142.6 10.7 104 39-167 12-123 (123)
72 cd08407 C2B_Synaptotagmin-13 C 99.7 5.7E-17 1.2E-21 147.2 9.0 111 39-175 13-131 (138)
73 cd08388 C2A_Synaptotagmin-4-11 99.7 1.7E-16 3.7E-21 142.6 12.0 104 40-168 15-127 (128)
74 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.3E-16 2.8E-21 142.4 11.0 103 40-168 15-124 (125)
75 cd08384 C2B_Rabphilin_Doc2 C2 99.7 9.2E-17 2E-21 145.0 9.9 109 39-175 11-127 (133)
76 cd08406 C2B_Synaptotagmin-12 C 99.7 6.9E-17 1.5E-21 146.5 9.0 109 39-175 13-129 (136)
77 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.5E-16 3.3E-21 144.3 10.2 109 39-175 13-129 (136)
78 cd08383 C2A_RasGAP C2 domain ( 99.7 8.8E-16 1.9E-20 135.1 14.1 113 42-187 1-117 (117)
79 cd08676 C2A_Munc13-like C2 dom 99.7 2.1E-16 4.6E-21 145.8 10.5 97 41-167 28-153 (153)
80 cd08690 C2_Freud-1 C2 domain f 99.7 7.3E-16 1.6E-20 142.2 13.8 102 85-189 22-138 (155)
81 cd04032 C2_Perforin C2 domain 99.7 3.5E-16 7.6E-21 140.0 11.2 102 24-156 13-118 (127)
82 cd08390 C2A_Synaptotagmin-15-1 99.7 3.7E-16 8.1E-21 138.9 11.4 104 40-168 13-122 (123)
83 cd08389 C2A_Synaptotagmin-14_1 99.7 4.3E-16 9.2E-21 139.2 11.1 102 40-168 15-123 (124)
84 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 3.6E-16 7.8E-21 146.1 10.7 104 39-168 25-137 (162)
85 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.6E-16 3.4E-21 144.2 7.9 110 38-175 12-129 (136)
86 cd08405 C2B_Synaptotagmin-7 C2 99.7 2.8E-16 6.1E-21 142.5 9.5 109 39-175 13-129 (136)
87 cd08692 C2B_Tac2-N C2 domain s 99.7 4.9E-16 1.1E-20 139.6 10.5 115 34-175 7-129 (135)
88 cd04038 C2_ArfGAP C2 domain pr 99.7 8.5E-16 1.8E-20 140.8 11.8 92 41-160 2-94 (145)
89 cd08403 C2B_Synaptotagmin-3-5- 99.6 3E-16 6.5E-21 142.0 8.4 109 39-175 12-128 (134)
90 cd04026 C2_PKC_alpha_gamma C2 99.6 1.4E-15 3E-20 137.0 11.3 106 38-170 10-122 (131)
91 cd00276 C2B_Synaptotagmin C2 d 99.6 6.4E-16 1.4E-20 139.2 9.1 108 40-175 13-128 (134)
92 cd08675 C2B_RasGAP C2 domain s 99.6 1E-15 2.3E-20 139.1 10.3 101 43-170 1-121 (137)
93 cd00138 PLDc Phospholipase D. 99.6 2.8E-15 6.1E-20 141.4 13.2 143 251-462 22-169 (176)
94 cd08410 C2B_Synaptotagmin-17 C 99.6 7E-16 1.5E-20 139.9 8.3 110 39-175 12-129 (135)
95 cd08408 C2B_Synaptotagmin-14_1 99.6 7.3E-16 1.6E-20 140.3 8.2 110 39-175 13-131 (138)
96 cd08686 C2_ABR C2 domain in th 99.6 5.8E-15 1.2E-19 129.3 12.5 79 43-153 1-91 (118)
97 cd00275 C2_PLC_like C2 domain 99.6 8.4E-15 1.8E-19 130.9 13.8 118 42-187 3-127 (128)
98 cd04021 C2_E3_ubiquitin_ligase 99.6 8.3E-15 1.8E-19 131.1 12.9 116 42-185 3-124 (125)
99 KOG0696 Serine/threonine prote 99.6 4.7E-16 1E-20 158.6 5.3 106 39-171 178-290 (683)
100 cd04009 C2B_Munc13-like C2 dom 99.6 3.2E-15 6.9E-20 135.2 10.2 91 41-157 16-118 (133)
101 cd08409 C2B_Synaptotagmin-15 C 99.6 1.7E-15 3.8E-20 137.6 8.4 108 40-174 14-129 (137)
102 cd04037 C2E_Ferlin C2 domain f 99.6 8.3E-15 1.8E-19 130.9 12.4 98 42-168 1-101 (124)
103 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.5E-14 3.3E-19 128.7 12.1 101 40-166 14-122 (123)
104 cd04048 C2A_Copine C2 domain f 99.6 9.9E-15 2.1E-19 129.5 10.5 97 46-168 5-113 (120)
105 cd08691 C2_NEDL1-like C2 domai 99.6 5.2E-14 1.1E-18 127.7 13.5 115 42-185 2-136 (137)
106 PHA03003 palmytilated EEV memb 99.6 3.4E-14 7.4E-19 149.8 13.5 146 251-462 217-363 (369)
107 PRK12452 cardiolipin synthetas 99.5 1.5E-14 3.2E-19 158.3 11.1 153 220-463 329-481 (509)
108 PLN03200 cellulose synthase-in 99.5 1.3E-14 2.7E-19 174.7 10.6 119 39-189 1978-2101(2102)
109 PRK13912 nuclease NucT; Provis 99.5 5.3E-13 1.2E-17 126.6 15.2 141 250-463 33-175 (177)
110 cd04047 C2B_Copine C2 domain s 99.5 4.2E-13 9E-18 117.0 10.3 87 45-158 4-101 (110)
111 KOG2059 Ras GTPase-activating 99.4 1.4E-13 3E-18 147.9 8.6 126 41-194 5-131 (800)
112 PF00168 C2: C2 domain; Inter 99.4 2.6E-12 5.6E-17 105.3 9.2 81 43-149 1-85 (85)
113 KOG1011 Neurotransmitter relea 99.3 1.8E-12 3.8E-17 137.4 8.5 119 41-188 295-426 (1283)
114 cd00030 C2 C2 domain. The C2 d 99.3 1E-11 2.3E-16 103.5 10.2 99 43-167 1-102 (102)
115 PRK01642 cls cardiolipin synth 99.3 1.1E-11 2.4E-16 135.3 11.8 154 219-464 302-456 (483)
116 smart00239 C2 Protein kinase C 99.3 2.1E-11 4.5E-16 102.3 10.8 93 42-160 1-97 (101)
117 COG5038 Ca2+-dependent lipid-b 99.3 9.6E-12 2.1E-16 140.6 11.1 126 41-194 436-563 (1227)
118 COG5038 Ca2+-dependent lipid-b 99.3 9E-12 1.9E-16 140.9 9.9 138 25-190 1024-1163(1227)
119 PLN02223 phosphoinositide phos 99.3 3.3E-11 7.2E-16 129.6 13.2 123 40-187 408-536 (537)
120 KOG1028 Ca2+-dependent phospho 99.2 1.6E-11 3.5E-16 131.2 8.6 114 34-175 291-412 (421)
121 PF13091 PLDc_2: PLD-like doma 99.2 5.8E-11 1.3E-15 105.5 8.7 124 255-459 1-126 (126)
122 PRK11263 cardiolipin synthase 99.2 1.1E-10 2.4E-15 124.5 11.6 134 250-461 206-341 (411)
123 PLN02952 phosphoinositide phos 99.2 1.9E-10 4.2E-15 126.1 13.5 123 40-186 469-597 (599)
124 PLN02230 phosphoinositide phos 99.2 2.7E-10 5.9E-15 124.7 13.6 124 40-187 468-597 (598)
125 cd08374 C2F_Ferlin C2 domain s 99.2 2.3E-10 4.9E-15 103.0 10.6 95 43-159 2-125 (133)
126 PHA02820 phospholipase-D-like 99.1 2E-10 4.2E-15 123.1 11.6 151 252-462 220-380 (424)
127 KOG3603 Predicted phospholipas 99.1 2.9E-10 6.3E-15 117.3 12.1 150 251-464 277-441 (456)
128 KOG0169 Phosphoinositide-speci 99.1 2.8E-10 6E-15 124.7 10.6 121 42-188 617-744 (746)
129 PLN02222 phosphoinositide phos 99.1 9.8E-10 2.1E-14 120.3 14.6 122 40-187 451-580 (581)
130 PLN02228 Phosphoinositide phos 99.1 1.2E-09 2.6E-14 119.3 13.4 126 40-189 430-562 (567)
131 cd08689 C2_fungal_Pkc1p C2 dom 99.0 1.3E-09 2.9E-14 92.7 8.1 88 43-157 1-88 (109)
132 KOG1031 Predicted Ca2+-depende 98.9 4.2E-09 9.1E-14 111.1 8.3 119 40-187 2-135 (1169)
133 PF00614 PLDc: Phospholipase D 98.8 7.1E-10 1.5E-14 71.8 0.9 27 365-399 2-28 (28)
134 KOG1264 Phospholipase C [Lipid 98.8 1.9E-08 4.2E-13 109.8 10.5 122 40-192 1064-1193(1267)
135 PRK05443 polyphosphate kinase; 98.8 4.4E-08 9.5E-13 110.3 12.5 140 251-461 349-494 (691)
136 KOG1328 Synaptic vesicle prote 98.7 6.8E-09 1.5E-13 112.2 1.5 93 38-156 944-1048(1103)
137 COG1502 Cls Phosphatidylserine 98.6 1.4E-07 3.1E-12 101.8 10.9 137 253-464 273-411 (438)
138 TIGR03705 poly_P_kin polyphosp 98.6 4.4E-07 9.5E-12 101.7 13.8 141 251-462 340-486 (672)
139 KOG1328 Synaptic vesicle prote 98.6 1.4E-08 3E-13 109.9 1.4 122 43-192 116-305 (1103)
140 PRK09428 pssA phosphatidylseri 98.1 9.2E-06 2E-10 87.8 9.6 142 250-461 251-407 (451)
141 PF13918 PLDc_3: PLD-like doma 98.0 1.7E-05 3.7E-10 74.3 8.5 57 251-307 83-140 (177)
142 KOG2059 Ras GTPase-activating 98.0 7.6E-06 1.7E-10 89.3 6.9 105 85-189 148-277 (800)
143 KOG0905 Phosphoinositide 3-kin 98.0 4.6E-06 1E-10 94.9 5.2 109 34-168 1517-1634(1639)
144 cd08683 C2_C2cd3 C2 domain fou 97.9 1.9E-05 4.1E-10 69.7 6.1 80 88-167 33-143 (143)
145 KOG1326 Membrane-associated pr 97.9 5.9E-06 1.3E-10 93.0 3.0 87 41-153 613-702 (1105)
146 KOG1013 Synaptic vesicle prote 97.9 4.7E-06 1E-10 83.9 1.6 126 41-192 93-233 (362)
147 KOG1013 Synaptic vesicle prote 97.8 2E-05 4.2E-10 79.5 4.8 101 39-167 231-339 (362)
148 smart00155 PLDc Phospholipase 97.7 2.4E-05 5.2E-10 50.8 2.3 25 366-398 3-27 (28)
149 PLN02964 phosphatidylserine de 97.7 3.3E-05 7.1E-10 86.2 4.5 102 39-173 52-157 (644)
150 PF07894 DUF1669: Protein of u 97.6 0.00083 1.8E-08 67.6 12.6 164 217-460 116-279 (284)
151 KOG1011 Neurotransmitter relea 97.6 0.00016 3.4E-09 78.2 7.4 100 42-168 1126-1236(1283)
152 KOG3603 Predicted phospholipas 97.5 0.0061 1.3E-07 64.0 18.4 146 251-462 73-225 (456)
153 KOG2060 Rab3 effector RIM1 and 97.3 0.0002 4.3E-09 73.5 3.6 108 39-171 267-381 (405)
154 KOG1326 Membrane-associated pr 97.2 8.2E-05 1.8E-09 84.1 -0.2 102 40-169 205-317 (1105)
155 TIGR03705 poly_P_kin polyphosp 97.1 0.0026 5.6E-08 71.9 10.8 144 240-465 494-643 (672)
156 PRK05443 polyphosphate kinase; 97.1 0.0028 6.1E-08 72.0 10.8 135 249-465 512-651 (691)
157 KOG1265 Phospholipase C [Lipid 96.8 0.0035 7.6E-08 70.5 8.5 102 38-175 700-811 (1189)
158 cd08684 C2A_Tac2-N C2 domain f 96.8 0.00099 2.2E-08 55.0 3.2 97 44-167 2-103 (103)
159 PLN02352 phospholipase D epsil 96.5 0.0066 1.4E-07 68.8 7.9 86 217-308 425-520 (758)
160 PLN02866 phospholipase D 96.4 0.015 3.3E-07 67.7 10.4 79 214-307 704-792 (1068)
161 COG3886 Predicted HKD family n 96.3 0.079 1.7E-06 50.1 12.4 139 250-461 39-179 (198)
162 cd08398 C2_PI3K_class_I_alpha 96.1 0.035 7.5E-07 51.7 9.2 86 39-154 6-105 (158)
163 KOG3837 Uncharacterized conser 95.8 0.0075 1.6E-07 62.8 3.3 98 88-188 388-503 (523)
164 PLN02270 phospholipase D alpha 95.7 0.03 6.5E-07 63.9 8.2 176 218-401 458-683 (808)
165 PLN03008 Phospholipase D delta 95.7 0.022 4.7E-07 65.1 7.0 91 220-310 528-636 (868)
166 KOG1329 Phospholipase D1 [Lipi 95.6 0.033 7.2E-07 63.5 8.1 148 241-402 557-728 (887)
167 PF12416 DUF3668: Cep120 prote 95.5 0.11 2.3E-06 54.3 10.8 117 43-189 2-133 (340)
168 KOG1327 Copine [Signal transdu 95.5 0.023 5E-07 61.7 5.9 71 86-157 155-236 (529)
169 PF10358 NT-C2: N-terminal C2 95.2 0.53 1.1E-05 42.5 13.1 120 41-194 7-141 (143)
170 cd08693 C2_PI3K_class_I_beta_d 94.9 0.16 3.5E-06 48.0 9.1 71 40-138 7-86 (173)
171 PF11495 Regulator_TrmB: Archa 94.8 0.048 1E-06 54.0 5.7 48 251-309 11-58 (233)
172 cd08397 C2_PI3K_class_III C2 d 93.8 0.23 5E-06 46.3 7.5 68 86-153 28-105 (159)
173 PF15627 CEP76-C2: CEP76 C2 do 93.2 0.52 1.1E-05 43.6 8.6 101 90-191 36-153 (156)
174 KOG1452 Predicted Rho GTPase-a 92.8 0.22 4.7E-06 50.5 5.9 82 34-140 44-125 (442)
175 cd08380 C2_PI3K_like C2 domain 92.6 0.75 1.6E-05 42.5 9.1 67 88-154 28-106 (156)
176 PF13090 PP_kinase_C: Polyphos 91.9 0.41 8.8E-06 49.7 6.7 137 251-458 19-161 (352)
177 KOG3964 Phosphatidylglycerolph 91.4 0.28 6.2E-06 51.2 5.0 130 250-403 39-173 (469)
178 cd04012 C2A_PI3K_class_II C2 d 91.2 0.95 2.1E-05 42.6 8.1 88 40-153 7-117 (171)
179 PF15625 CC2D2AN-C2: CC2D2A N- 91.2 1.3 2.8E-05 41.6 8.9 67 88-154 37-105 (168)
180 PF00792 PI3K_C2: Phosphoinosi 91.0 1.1 2.3E-05 40.8 7.9 65 90-154 4-84 (142)
181 COG0855 Ppk Polyphosphate kina 90.4 1.2 2.5E-05 49.7 8.8 91 250-377 352-447 (696)
182 cd08687 C2_PKN-like C2 domain 90.0 2.2 4.7E-05 35.9 8.0 64 88-155 9-72 (98)
183 cd08399 C2_PI3K_class_I_gamma 88.3 3.2 6.9E-05 39.4 9.1 48 90-137 32-87 (178)
184 smart00142 PI3K_C2 Phosphoinos 86.7 4.6 9.9E-05 34.4 8.4 50 88-137 32-90 (100)
185 KOG1327 Copine [Signal transdu 86.7 1.9 4.2E-05 47.2 7.4 62 99-160 40-107 (529)
186 PF14429 DOCK-C2: C2 domain in 86.2 2.1 4.5E-05 40.7 6.7 53 102-154 61-120 (184)
187 cd08694 C2_Dock-A C2 domains f 86.1 4.5 9.7E-05 38.9 8.7 36 102-137 55-93 (196)
188 cd08695 C2_Dock-B C2 domains f 82.0 3.1 6.6E-05 39.9 5.8 35 103-137 56-93 (189)
189 PF11618 DUF3250: Protein of u 79.8 13 0.00029 32.2 8.5 93 91-187 2-104 (107)
190 cd08679 C2_DOCK180_related C2 78.3 5.4 0.00012 37.7 6.2 50 103-153 56-114 (178)
191 KOG4269 Rac GTPase-activating 76.0 1.4 3E-05 50.6 1.5 126 26-191 744-885 (1112)
192 cd08696 C2_Dock-C C2 domains f 73.8 11 0.00024 35.8 6.9 39 100-138 54-95 (179)
193 KOG0694 Serine/threonine prote 71.0 1.3 2.7E-05 49.7 -0.2 79 88-167 28-108 (694)
194 cd08697 C2_Dock-D C2 domains f 68.9 17 0.00036 34.8 6.9 39 100-138 56-97 (185)
195 cd05137 RasGAP_CLA2_BUD2 CLA2/ 57.0 12 0.00027 40.0 4.1 45 144-190 1-46 (395)
196 KOG3543 Ca2+-dependent activat 56.6 74 0.0016 35.7 9.7 103 37-171 337-443 (1218)
197 PF13090 PP_kinase_C: Polyphos 56.3 76 0.0017 33.3 9.5 132 251-464 184-320 (352)
198 cd08406 C2B_Synaptotagmin-12 C 46.7 47 0.001 29.9 5.6 66 179-251 2-71 (136)
199 TIGR00230 sfsA sugar fermentat 40.0 1.3E+02 0.0027 29.9 7.9 54 252-307 159-213 (232)
200 cd08692 C2B_Tac2-N C2 domain s 39.1 64 0.0014 29.2 5.2 32 220-251 39-71 (135)
201 KOG3698 Hyaluronoglucosaminida 38.4 17 0.00036 40.2 1.5 90 245-344 57-156 (891)
202 PTZ00447 apical membrane antig 36.3 2.8E+02 0.006 29.2 9.7 96 89-191 75-174 (508)
203 PF06415 iPGM_N: BPG-independe 35.6 81 0.0018 31.1 5.7 50 253-311 14-72 (223)
204 PF06219 DUF1005: Protein of u 34.2 3.2E+02 0.0069 29.5 10.0 103 87-191 35-170 (460)
205 COG2248 Predicted hydrolase (m 31.7 95 0.0021 31.3 5.3 66 233-305 199-274 (304)
206 PRK00347 putative DNA-binding 31.0 2.1E+02 0.0046 28.4 7.9 24 284-307 192-215 (234)
207 PF09345 DUF1987: Domain of un 30.7 1.2E+02 0.0026 25.9 5.2 66 238-309 11-84 (99)
208 COG1184 GCD2 Translation initi 30.7 34 0.00073 35.3 2.2 51 285-348 128-178 (301)
209 PF03749 SfsA: Sugar fermentat 30.5 1.7E+02 0.0037 28.7 7.0 55 252-307 146-201 (215)
210 PF09565 RE_NgoFVII: NgoFVII r 30.2 1.8E+02 0.0039 30.0 7.4 26 367-397 80-106 (296)
211 COG0855 Ppk Polyphosphate kina 30.0 2.5E+02 0.0054 32.0 8.8 22 286-307 546-567 (696)
212 PF02601 Exonuc_VII_L: Exonucl 29.6 1.7E+02 0.0038 30.0 7.4 81 250-343 26-110 (319)
213 PF14186 Aida_C2: Cytoskeletal 28.6 1.9E+02 0.0041 26.6 6.5 72 88-159 31-116 (147)
214 PRK14466 ribosomal RNA large s 23.6 4.1E+02 0.0088 28.1 8.8 80 252-346 233-320 (345)
215 PF07615 Ykof: YKOF-related Fa 23.5 2.5E+02 0.0055 22.9 5.8 67 219-307 3-72 (81)
216 KOG2419 Phosphatidylserine dec 23.1 18 0.00039 40.5 -1.4 33 85-118 302-334 (975)
217 PRK05434 phosphoglyceromutase; 22.8 2E+02 0.0044 32.0 6.6 49 251-307 97-149 (507)
218 COG1489 SfsA DNA-binding prote 22.6 4.9E+02 0.011 25.9 8.5 23 284-306 189-211 (235)
219 PRK14459 ribosomal RNA large s 21.6 4.5E+02 0.0099 28.0 8.7 89 246-346 262-354 (373)
220 cd08392 C2A_SLP-3 C2 domain fi 20.6 2.9E+02 0.0063 24.3 6.1 32 220-251 41-72 (128)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=3.8e-108 Score=896.83 Aligned_cols=510 Identities=48% Similarity=0.845 Sum_probs=450.8
Q ss_pred CCCceEEeeceEEEEEEEEeecCCCCCccccccccccccc--cc------ccccc----cc----ccCCCCCCCCcEEEE
Q 009008 31 QGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKL--NV------KVTSK----IE----SHLSDKITSDPYVTV 94 (546)
Q Consensus 31 ~~~~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~--~~------~~~~~----~~----~~~~~~g~~DPYv~v 94 (546)
.-+++++||||+|+|||+||++|++||.+++..+.+|..+ +. ..... .+ .+++..+++||||+|
T Consensus 4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I 83 (868)
T PLN03008 4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV 83 (868)
T ss_pred ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence 4568889999999999999999999999887666666522 11 00011 11 133457899999999
Q ss_pred EECCEEEeeeeeeeCCCCCeEeeEEEEeecCCCceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCc
Q 009008 95 SICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (546)
Q Consensus 95 ~l~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~ 174 (546)
.|++++++||+|+++++||+|||+|.|+|+++...|.|+|+|+|.+++++||++.|||++|..|+..+.|++|++..+++
T Consensus 84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 99999899999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEEeeccccccccccCcCCCCCccCCCCCCCCcccCceEEEeeccccCCCCCCeEEecCCccccchhhHHH
Q 009008 175 CKAGAVLSLSIQYTPVENMSLYYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQD 254 (546)
Q Consensus 175 ~k~~g~I~l~l~f~P~~~~~~~~~g~~~~~~~~~~~~~~~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~ 254 (546)
++++++|+|+++|+|+.++..|..|+++++++.|||.+|||+|+||+|+||||+|..|+++|.|.|.+|+.|++++||++
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed 243 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED 243 (868)
T ss_pred CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccceEEEEEEeecceeeEEeCCC----CchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcH
Q 009008 255 VYDAINQARRLIYITGWSVYHTVRLVRDGS----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDE 330 (546)
Q Consensus 255 l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~----~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~ 330 (546)
|++||++||++|||++||++|+++|+|++. ...+|+++|++||+|||+|+|||||+.+|....+++++|+|.||++
T Consensus 244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 999999999999999999999999999863 4589999999999999999999999999876667889999999999
Q ss_pred HHHHhhcCCCcEEEEccCCCCCCccceecc-----------ccccccccccceEEEccCcccccceEEEEEccccccCcc
Q 009008 331 ETRRFFKHSSVQVLLCPRSAGKGHSFVKKQ-----------EVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGR 399 (546)
Q Consensus 331 ~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~-----------~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r 399 (546)
+++++|++++|.|.++|+.++...+++++. ..+++++||||+||||++.++.+|+.+|||||+|||++|
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999998877666776542 345789999999999998777889999999999999999
Q ss_pred cCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHHHHHHHhhccCCCC----cccccCCC
Q 009008 400 YDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHG----LQKLKSSN 475 (546)
Q Consensus 400 ~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~----~~~~~~~~ 475 (546)
|||++|++++++++.|++||+||++++ ..+++++||||+|++|+||||++|+.+|.+||+++++.+. .+....++
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~~-~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~ 482 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFPA-GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ 482 (868)
T ss_pred cCCcCCCccccccccccccccCccccC-CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence 999999999999999999999999865 3557889999999999999999999999999999988542 22223455
Q ss_pred ccccccccCCCcccCCCC--------------cc--cccCCCCCceEEEEecccCCcccCCCCCC---------------
Q 009008 476 DDSLLKLERIPEIVGMTE--------------AS--YLSENDPEAWHAQVFRSIDSNSVKGFPVE--------------- 524 (546)
Q Consensus 476 ~~~l~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~vQv~Rs~~~~s~~~~p~~--------------- 524 (546)
++.|+.++++++++.+++ .+ ...+.++++|+||+|||++.||+++||+.
T Consensus 483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~ 562 (868)
T PLN03008 483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRL 562 (868)
T ss_pred cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccccc
Confidence 788999999988765421 11 11135779999999999999999999963
Q ss_pred -------------HHHHhhcceEeeeEEEe
Q 009008 525 -------------PRDATSMVRISNIIWWL 541 (546)
Q Consensus 525 -------------~~~~~~~~~~~~~~~~~ 541 (546)
++.|++++|||||||=.
T Consensus 563 ~ie~SIq~aYi~aIr~A~hFIYIENQYFis 592 (868)
T PLN03008 563 VVDKSIQTAYIQTIRSAQHFIYIENQYFLG 592 (868)
T ss_pred chhhhHHHHHHHHHHhhccEEEEehhhhhc
Confidence 67899999999999943
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=1.1e-100 Score=838.85 Aligned_cols=482 Identities=41% Similarity=0.785 Sum_probs=423.3
Q ss_pred EEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCe
Q 009008 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPV 114 (546)
Q Consensus 36 ~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~-t~nP~ 114 (546)
.+||||+|+|||+||++|++++. . ++|+++.+..+..++ .+++++||||+|.+++++++||+++.| ..||+
T Consensus 3 ~~llhg~l~~~i~ea~~l~~~~~-~----~~~~~~~~~~~~~~~---~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~ 74 (808)
T PLN02270 3 QILLHGTLHATIYEVDKLHSGGG-P----GFLGKLVANVEETVG---VGKGESQLYATIDLEKARVGRTRKIENEPKNPR 74 (808)
T ss_pred ceeeecceEEEEEEcccCCCcch-h----hHHHHHHhccchhcc---CCCCCCCceEEEEeCCcEEEEEeecCCCCCCCc
Confidence 35899999999999999998654 2 233333333332222 136789999999999999999999998 46999
Q ss_pred EeeEEEEeecCCCceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeecccccc
Q 009008 115 WMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMS 194 (546)
Q Consensus 115 WNE~F~~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~~~~ 194 (546)
|||+|.++|+|..+.|.|+|+|.|.++..+||.+.||+++|..|..+++|+++++.+|+|++++.+|+++++|+|+.++.
T Consensus 75 w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 75 WYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred cccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ccccCcCCCCCccCCCCCCCCcccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeec
Q 009008 195 LYYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVY 274 (546)
Q Consensus 195 ~~~~g~~~~~~~~~~~~~~~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~ 274 (546)
.|..|+++ ++|.|||.+|||+|+||+|+||||+|..|+++|.|+|.+|+.|++++||+++++||.+||++|||++|+|+
T Consensus 155 ~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d 233 (808)
T PLN02270 155 NWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVY 233 (808)
T ss_pred chhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecC
Confidence 99999965 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeCCC-----CchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccCC
Q 009008 275 HTVRLVRDGS-----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRS 349 (546)
Q Consensus 275 ~~~~l~~~~~-----~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~ 349 (546)
|+++|+|++. ...+|+++|++||++||+|+||+||+.++... ++..|+|.||+++++++|++.+|+|.++|+.
T Consensus 234 ~~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~ 311 (808)
T PLN02270 234 TEISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRN 311 (808)
T ss_pred CCceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCC
Confidence 9999999753 23799999999999999999999999987644 4567999999999999999999999999988
Q ss_pred CCCCccceeccccccccccccceEEEccCccc---ccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCC
Q 009008 350 AGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQ---FKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLE 426 (546)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~---~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~ 426 (546)
++...+|+.+...++.++||||+||||+++++ ++|+.+|||||+|||++||||++|++|++|++.|++||+||+|.+
T Consensus 312 P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~ 391 (808)
T PLN02270 312 PDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTG 391 (808)
T ss_pred cccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCccccc
Confidence 76666677666778899999999999997654 479999999999999999999999999999999999999999987
Q ss_pred C--CCCCCCCCeeeccccccChHHHHHHHHHHHHHhhccCCCCcccccCCCccccccccCCCcccCCCCcccccCCCCCc
Q 009008 427 P--IAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEA 504 (546)
Q Consensus 427 ~--~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (546)
. ..+++|+||||+|++|+||||++|+.+|++||+.+++.. .++.+.+++++..++. +...+.+.++
T Consensus 392 ~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~-----------ll~~~~~~~~~~~P~~-~~~~p~d~~~ 459 (808)
T PLN02270 392 ASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD-----------ILVQLRELEDVIIPPS-PVMFPDDHEV 459 (808)
T ss_pred ccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc-----------chhhhcccccccCCCC-cccCCCcCCc
Confidence 3 367899999999999999999999999999999987752 2333334333332222 2223467799
Q ss_pred eEEEEecccCCcccCCCCCC----------------------------HHHHhhcceEeeeEEE
Q 009008 505 WHAQVFRSIDSNSVKGFPVE----------------------------PRDATSMVRISNIIWW 540 (546)
Q Consensus 505 ~~vQv~Rs~~~~s~~~~p~~----------------------------~~~~~~~~~~~~~~~~ 540 (546)
|+||||||++.+++++||+. ++.|.+++||+||||=
T Consensus 460 w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~ 523 (808)
T PLN02270 460 WNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFL 523 (808)
T ss_pred cccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhh
Confidence 99999999999999999974 5567789999999993
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.8e-91 Score=765.49 Aligned_cols=443 Identities=37% Similarity=0.654 Sum_probs=383.4
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEee
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQ 117 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE 117 (546)
||||+|++||+||+.+. + .|.. ...++ .+ .||||+|.+++++++|| .+..||+|||
T Consensus 7 ~lhg~l~~~i~~~~~~~--~--------~~~~-----~~~~~-----~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e 62 (758)
T PLN02352 7 FFHGTLEATIFDATPYT--P--------PFPF-----NCIFL-----NG-KATYVTIKIGNKKVAKT---SHEYDRVWNQ 62 (758)
T ss_pred ccccceEEEEEEeeehh--h--------cccc-----ccccc-----CC-CCceEEEEeCCcEEecC---CCCCCCcccc
Confidence 69999999999999321 1 1110 00111 12 39999999999999999 6677999999
Q ss_pred EEEEeecCCC-ceEEEEEEecCCcCCeeeEeEEEeceeccCCCe-eeeccccccCCCCcccCCceEEEEEEeeccccccc
Q 009008 118 HFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDK-IEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMSL 195 (546)
Q Consensus 118 ~F~~~v~~~~-~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~-~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~~~~~ 195 (546)
+|.++|+|.. ..|.|+|+| +..+||.+.||+++|..|.. +++|+++++.+|+|+++ .+|+++++|+|+.++..
T Consensus 63 ~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~ 137 (758)
T PLN02352 63 TFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPT 137 (758)
T ss_pred ceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcc
Confidence 9999999998 799999999 58999999999999999866 99999999999999855 89999999999999999
Q ss_pred cccCcCCCCCccCCCCCCCCcccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecc
Q 009008 196 YYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYH 275 (546)
Q Consensus 196 ~~~g~~~~~~~~~~~~~~~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~ 275 (546)
|..|+++ +++.|||.+|||+|+||+|+||||+|..|++.|.|.| .|.++++|++|++||++||++|||++|+|++
T Consensus 138 ~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~ 212 (758)
T PLN02352 138 WCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNP 212 (758)
T ss_pred hhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecC
Confidence 9999976 6999999999999999999999999999999999998 6888999999999999999999999999999
Q ss_pred eeeEEeCC------CCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccCC
Q 009008 276 TVRLVRDG------SNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRS 349 (546)
Q Consensus 276 ~~~l~~~~------~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~ 349 (546)
+++|.|++ ..+.+|+++|++||++||+|+||+||+.++... ++..|+|.+++++++++|++.+|.|.++|+.
T Consensus 213 ~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~ 290 (758)
T PLN02352 213 KMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPRL 290 (758)
T ss_pred CceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeecccc
Confidence 99999876 356899999999999999999999999988644 5667889999999999999999999999875
Q ss_pred CCCCccceeccccccccccccceEEEccCccc--ccceEEEEEccccccCcccCCCCCCcccccccc-cCCCCCCCCCCC
Q 009008 350 AGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQ--FKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETV-HKDDYYNPSLLE 426 (546)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~--~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~-~~~d~~~~~~~~ 426 (546)
. ...++.++||||+||||++.++ ..|+.+|||||+|||++||||++|++++++++. |++||+|++|.+
T Consensus 291 ~---------~~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g 361 (758)
T PLN02352 291 H---------KKFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAG 361 (758)
T ss_pred c---------cccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCccccccccccccccccccccc
Confidence 3 2345779999999999997654 568889999999999999999999999999875 779999999986
Q ss_pred C--CCCCCCCCeeeccccccChHHHHHHHHHHHHHhhccCCCCcccccCCCccccccccCCCcccCCCCcccccCCCCCc
Q 009008 427 P--IAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEA 504 (546)
Q Consensus 427 ~--~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (546)
. ..+++|+||||+||+|+||||+||+.||+|||+++++.. .++...+++++..+++. +..+.++
T Consensus 362 ~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~-----------~l~p~~~~~~~~~~p~~---~~~~~~~ 427 (758)
T PLN02352 362 AKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS-----------VLVPTSSIRNLVHQPGS---SESNNRN 427 (758)
T ss_pred ccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc-----------ccCCcccccccccCCCC---CcccCCc
Confidence 4 467899999999999999999999999999999988753 22222223332221111 1246789
Q ss_pred eEEEEecccCCcccCCCCCC--------------HHHHhhcceEeeeEE
Q 009008 505 WHAQVFRSIDSNSVKGFPVE--------------PRDATSMVRISNIIW 539 (546)
Q Consensus 505 ~~vQv~Rs~~~~s~~~~p~~--------------~~~~~~~~~~~~~~~ 539 (546)
|+|||+||++.||+.+||+. ++.|++++|||||||
T Consensus 428 w~VQv~RSid~~sa~~~P~~~~~erSIq~AYi~AIr~AqhfIYIENQYF 476 (758)
T PLN02352 428 WKVQVYRSIDHVSASHMPRNLPVERSIHEAYVEAIRRAERFIYIENQYF 476 (758)
T ss_pred ccceEEEecCccccccCCCCCchhhHHHHHHHHHHHhhhhEEEEehhhh
Confidence 99999999999999999864 789999999999999
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=9.3e-80 Score=670.02 Aligned_cols=483 Identities=46% Similarity=0.727 Sum_probs=411.3
Q ss_pred CCCCCCCCceEEeeceEEEEEEEEeecCCCCCccccccccccccccc----ccc------cccc-----ccCCCCCCCCc
Q 009008 26 PFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNV----KVT------SKIE-----SHLSDKITSDP 90 (546)
Q Consensus 26 ~~~~~~~~~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~----~~~------~~~~-----~~~~~~g~~DP 90 (546)
+...++.+..+.|+||+|+++|+++..+.+++.+....+..+.++-. ... ..+. ++.++..+.++
T Consensus 61 ~~~~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~ 140 (887)
T KOG1329|consen 61 PFVPSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLEN 140 (887)
T ss_pred ccccCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccc
Confidence 44455666777899999999999999999887754433333322210 000 0011 01123355799
Q ss_pred EEEEEECCEEEeeeeeeeCC-CCCeEeeEEEEeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 91 YVTVSICGAVIGRTFVISNS-ESPVWMQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 91 Yv~v~l~~~~~~rT~vi~~t-~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
|+++.|...++++|..+.+. .+|.|.++|.+.+.+....+.++|.+.+..| +.++|.+++|...+..|....+|++++
T Consensus 141 Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il 220 (887)
T KOG1329|consen 141 YLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPIL 220 (887)
T ss_pred hheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeee
Confidence 99999999999999998886 8999999999999999999999999999999 899999999999999999999999999
Q ss_pred cCCCCcccCCceEEEEEEeeccccccccccCcCCCCCccCCCCCCCCcccCceEEEeeccccCCCCCCeEEecCCc-ccc
Q 009008 169 NSSRKPCKAGAVLSLSIQYTPVENMSLYYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGV-QFN 247 (546)
Q Consensus 169 ~~~g~~~k~~g~I~l~l~f~P~~~~~~~~~g~~~~~~~~~~~~~~~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~-~y~ 247 (546)
+.++++++++..+++.+.|++......|..|..+++.+.+++.+++|.+.||.|++|||+|..+++.|.+.+++|+ -|.
T Consensus 221 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd 300 (887)
T KOG1329|consen 221 DNDGKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVD 300 (887)
T ss_pred ccCCccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEc
Confidence 9999988888889999999999999999999988899999999999999999999999999999999999999999 788
Q ss_pred chhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCC--CchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCcc
Q 009008 248 HESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS--NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (546)
Q Consensus 248 ~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~--~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~ 325 (546)
+..||+++++||++|++.|||++||++|+++|+|+.. ...+|+++|++||++||+|+|||||+.++... .
T Consensus 301 ~~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i 372 (887)
T KOG1329|consen 301 GKKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------I 372 (887)
T ss_pred hhhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhccc--------c
Confidence 8889999999999999999999999999999999854 46999999999999999999999999998543 2
Q ss_pred CCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCC
Q 009008 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (546)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H 405 (546)
+++.+++..++.|.+|+|.+||+..++.+ .++|+||||+||||. .+|||||+|||+|||||++|
T Consensus 373 ~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~--------~v~fvGGlDLC~GRYDT~eH 436 (887)
T KOG1329|consen 373 NSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQ--------EVAFVGGLDLCDGRYDTPEH 436 (887)
T ss_pred CchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcc--------eeccccceeccccccCCccc
Confidence 47888999999999999999998864321 367999999999999 79999999999999999999
Q ss_pred CcccccccccCCCCCCCCCCC----CCCCCCCCCeeeccccccChHHHHHHHHHHHHHhhccCCCCcccccCCCcccccc
Q 009008 406 PLFKTLETVHKDDYYNPSLLE----PIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLK 481 (546)
Q Consensus 406 ~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~l~~ 481 (546)
+++++++++|++||+||+|++ ...++||+||||+||+|.||+|+||++||+||||++...++ .+++.++-
T Consensus 437 ~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~------~~~~~~p~ 510 (887)
T KOG1329|consen 437 PLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK------PYDDSLPL 510 (887)
T ss_pred cccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC------CCCcccee
Confidence 999999999999999999998 56789999999999999999999999999999999876432 12333333
Q ss_pred ccCCCcccCCCCcccccCCCCCceEEEEecccCCcccCC------------------------CCCCHHHHhhcceEeee
Q 009008 482 LERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKG------------------------FPVEPRDATSMVRISNI 537 (546)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~vQv~Rs~~~~s~~~------------------------~p~~~~~~~~~~~~~~~ 537 (546)
+..++++..++.+ .+.+++.|+|||+||++++++.+ |-+++++|+++||||||
T Consensus 511 L~p~~~~~~~~~~---~~~~~e~~~~q~f~si~~gs~~~~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQ 587 (887)
T KOG1329|consen 511 LLPISDITGPSEP---NEEDPESWHVQVFRSIDGGSVAGPQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQ 587 (887)
T ss_pred ecChhhhcCCCCc---cccccccccccceeeccCCcccchHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeee
Confidence 3334444333322 45788999999999999988865 44558999999999999
Q ss_pred EEEe
Q 009008 538 IWWL 541 (546)
Q Consensus 538 ~~~~ 541 (546)
||=-
T Consensus 588 fFi~ 591 (887)
T KOG1329|consen 588 FFIG 591 (887)
T ss_pred eEEe
Confidence 9943
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=3.6e-48 Score=431.97 Aligned_cols=210 Identities=36% Similarity=0.643 Sum_probs=174.3
Q ss_pred CCCCCCcc----cCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEe--CC
Q 009008 210 PGTYFPLR----RGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVR--DG 283 (546)
Q Consensus 210 ~~~~~p~~----~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~--~~ 283 (546)
.++|+|++ .||++++|.||.+ .|++|++||++||++|||++|+|+|++||++ ++
T Consensus 320 F~SFAP~r~~~~~gN~vk~LvDG~d--------------------yF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D 379 (1068)
T PLN02866 320 FGSFAPPRGLTEDGSQAQWFIDGHA--------------------AFEAIASAIENAKSEIFITGWWLCPELYLRRPFHD 379 (1068)
T ss_pred CCCcCCCccccCCCCEEEEEeCHHH--------------------HHHHHHHHHHhcccEEEEEEccCCceEEEEecCCC
Confidence 36789999 6999999999997 7999999999999999999999999999998 45
Q ss_pred CCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhh--cCCCcEEEEccCCCCCCccceeccc
Q 009008 284 SNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFF--KHSSVQVLLCPRSAGKGHSFVKKQE 361 (546)
Q Consensus 284 ~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~v~~~p~~~~~~~~~~~~~~ 361 (546)
..+.+|.++|++||++||+||||+||..+..... .+..+...+ .++||+|..+|... ..
T Consensus 380 ~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~----------~S~~~k~~L~~lh~gI~V~r~P~~~---------~~ 440 (1068)
T PLN02866 380 HESSRLDSLLEAKAKQGVQIYILLYKEVALALKI----------NSVYSKRRLLGIHENVKVLRYPDHF---------SS 440 (1068)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEEECcccccccc----------CchhhHHHHHHhCCCeEEEecCccc---------cc
Confidence 6789999999999999999999999998642111 111122222 36899987765431 01
Q ss_pred cccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCcccc-cccccCCCCCCCCCCCC------------C
Q 009008 362 VGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKT-LETVHKDDYYNPSLLEP------------I 428 (546)
Q Consensus 362 ~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~-~~~~~~~d~~~~~~~~~------------~ 428 (546)
..+++|||||+||||+ .+||+||+|||.|||||++|++.|. ...|+++||.||+.... +
T Consensus 441 ~~ln~RhHRKIVVIDg--------~IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR 512 (1068)
T PLN02866 441 GVYLWSHHEKLVIVDY--------QICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDR 512 (1068)
T ss_pred CcccccCCCCeEEECC--------CEEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccccccc
Confidence 2367999999999999 7999999999999999999999873 46789999999975431 2
Q ss_pred CCCCCCCeeeccccccChHHHHHHHHHHHHHhhccCCC
Q 009008 429 AGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPH 466 (546)
Q Consensus 429 ~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~~~ 466 (546)
...+++||||+|++|+||||.||+++|++|||.+++.+
T Consensus 513 ~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k 550 (1068)
T PLN02866 513 RKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNK 550 (1068)
T ss_pred ccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhccc
Confidence 35578899999999999999999999999999887653
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.97 E-value=1.2e-31 Score=292.05 Aligned_cols=232 Identities=21% Similarity=0.273 Sum_probs=177.4
Q ss_pred CCcccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHH
Q 009008 214 FPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLL 293 (546)
Q Consensus 214 ~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L 293 (546)
+|...||+++++.||.+ +|++++++|++||++|+|++| +++++..+..+.++|
T Consensus 134 ~p~~~~n~~~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~~g~~i~~aL 186 (509)
T PRK12452 134 GPAADRTTTKLLTNGDQ--------------------TFSEILQAIEQAKHHIHIQYY-------IYKSDEIGTKVRDAL 186 (509)
T ss_pred CcccCCCEEEEeCCHHH--------------------HHHHHHHHHHHhCCEEEEEEE-------EEeCCcHHHHHHHHH
Confidence 78999999999999987 899999999999999999999 888999999999999
Q ss_pred HhhhcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceE
Q 009008 294 KIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTV 373 (546)
Q Consensus 294 ~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~v 373 (546)
++||+|||+|||| +|+.||... .....+.|+++||++..+.+.. .++ ...+.++|||||++
T Consensus 187 ~~aa~rGV~VRiL-~D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~---~~~---~~~~~n~RnHRKi~ 247 (509)
T PRK12452 187 IKKAKDGVIVRFL-YDGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIF---SAW---LLETVNYRNHRKIV 247 (509)
T ss_pred HHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHhCCeEEEEecCcc---ccc---ccccccCCCCCeEE
Confidence 9999999999999 599998522 2456777899999999875432 111 12346899999999
Q ss_pred EEccCcccccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHH
Q 009008 374 VVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILT 453 (546)
Q Consensus 374 VID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~ 453 (546)
|||| ++||+||+|++++|... .....+|||+|++++||+|.+++.
T Consensus 248 VIDg--------~ia~~GG~Ni~d~y~~~---------------------------~~~~~~WrD~~~~i~Gp~V~~l~~ 292 (509)
T PRK12452 248 IVDG--------EIGFTGGLNVGDEYLGR---------------------------SKKFPVWRDSHLKVEGKALYKLQA 292 (509)
T ss_pred EEcC--------CEEEeCCcccchhhcCC---------------------------CCCCCCceEEEEEEECHHHHHHHH
Confidence 9999 79999999999976532 123568999999999999999999
Q ss_pred HHHHHHhhccCCCCcccccCCCccccccccCCCcccCCCCcccccCCCCCceEEEEecccCCccc----CCCCCCHHHHh
Q 009008 454 NFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSV----KGFPVEPRDAT 529 (546)
Q Consensus 454 ~F~~rW~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQv~Rs~~~~s~----~~~p~~~~~~~ 529 (546)
.|.++|+.+++.... ... ..+.. +.. .|. .+...+...||++.|.+.... ..+-+.++.|+
T Consensus 293 ~F~~dW~~~~~~~~~----~~~-~~~~~----~~~-----~~~-~~~~~~~~~~q~~~sgp~~~~~~i~~~~l~~I~~A~ 357 (509)
T PRK12452 293 IFLEDWLYASSGLNT----YSW-DPFMN----RQY-----FPG-KEISNAEGAVQIVASGPSSDDKSIRNTLLAVMGSAK 357 (509)
T ss_pred HHHHHHHHhhCcccc----ccc-ccccc----hhc-----CCC-ccccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhh
Confidence 999999987653100 000 00000 000 010 011135568999999875311 12455689999
Q ss_pred hcceEeeeEEEe
Q 009008 530 SMVRISNIIWWL 541 (546)
Q Consensus 530 ~~~~~~~~~~~~ 541 (546)
+.++|+..||.+
T Consensus 358 ~~I~I~tpYf~p 369 (509)
T PRK12452 358 KSIWIATPYFIP 369 (509)
T ss_pred hEEEEECCccCC
Confidence 999999999964
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.97 E-value=1.8e-30 Score=282.24 Aligned_cols=228 Identities=20% Similarity=0.298 Sum_probs=175.1
Q ss_pred CCcccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHH
Q 009008 214 FPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLL 293 (546)
Q Consensus 214 ~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L 293 (546)
+|...||+++++.||.+ +|++++++|++||++|+|++| ++++|..+.++.++|
T Consensus 110 ~~~~~~n~v~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~l~~y-------i~~~d~~g~~i~~aL 162 (483)
T PRK01642 110 IPGLKGNQLRLLTNGDE--------------------TFQAIIRDIELARHYILMEFY-------IWRPDGLGDQVAEAL 162 (483)
T ss_pred CCccCCCEEEEEcCHHH--------------------HHHHHHHHHHHhhcEEEEEEE-------EEccCCcHHHHHHHH
Confidence 78899999999999987 899999999999999999999 888989999999999
Q ss_pred HhhhcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEc-cCCCCCCccceeccccccccccccce
Q 009008 294 KIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLC-PRSAGKGHSFVKKQEVGTIYTHHQKT 372 (546)
Q Consensus 294 ~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~-p~~~~~~~~~~~~~~~~~~~~~HqK~ 372 (546)
++||+|||+|||| +|+.|+.... .....+.|+++||++..+ |.... ++ ...+.++|||+|+
T Consensus 163 ~~aa~rGV~VriL-~D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~~---~~---~~~~~n~RnHrKi 224 (483)
T PRK01642 163 IAAAKRGVRVRLL-YDSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNLG---RV---FRRRLDLRNHRKI 224 (483)
T ss_pred HHHHHCCCEEEEE-EECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCcc---cc---cccccccccCceE
Confidence 9999999999999 5999885331 233566789999999987 43211 11 1235688999999
Q ss_pred EEEccCcccccceEEEEEccccccC-cccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHH
Q 009008 373 VVVDADAGQFKRKIIAFVGGLDLCK-GRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDI 451 (546)
Q Consensus 373 vVID~~~~~~~~~~vAfvGG~nl~~-~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl 451 (546)
+|||+ ++||+||+|+++ +|+.. .....+|||+|++++||+|.++
T Consensus 225 ~VIDg--------~ia~~Gg~Ni~d~~y~~~---------------------------~~~~~~w~D~~~~i~Gp~v~~l 269 (483)
T PRK01642 225 VVIDG--------YIAYTGSMNVVDPEYFKQ---------------------------DPGVGQWRDTHVRIEGPVVTAL 269 (483)
T ss_pred EEEcC--------CEEEeCCcccCCHHHhCC---------------------------CCCCCCcEEEEEEEEcHHHHHH
Confidence 99999 799999999999 66542 1235689999999999999999
Q ss_pred HHHHHHHHhhccCCCCcccccCCCccccccccCCCcccCCCCcccccCCCCCceEEEEecccCCccc----CCCCCCHHH
Q 009008 452 LTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSV----KGFPVEPRD 527 (546)
Q Consensus 452 ~~~F~~rW~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQv~Rs~~~~s~----~~~p~~~~~ 527 (546)
+..|.++|+.+++... .... |... . .+ ....++..||++.|.+.... ..|-+.++.
T Consensus 270 ~~~F~~dW~~~~~~~~-----------~~~~---~~~~-~--~~---~~~~~~~~~qi~~sgP~~~~~~~~~~~~~~I~~ 329 (483)
T PRK01642 270 QLIFAEDWEWETGERI-----------LPPP---PDVL-I--MP---FEEASGHTVQVIASGPGDPEETIHQFLLTAIYS 329 (483)
T ss_pred HHHHHHHHHHHhCccc-----------CCCC---cccc-c--CC---ccCCCCceEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 9999999998765310 0000 1000 0 01 12234568999999875321 123445788
Q ss_pred HhhcceEeeeEEEe
Q 009008 528 ATSMVRISNIIWWL 541 (546)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (546)
|.+.++|+..||-+
T Consensus 330 A~~~I~I~tpYfip 343 (483)
T PRK01642 330 ARERLWITTPYFVP 343 (483)
T ss_pred hccEEEEEcCCcCC
Confidence 99999999999853
No 8
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.96 E-value=1.7e-28 Score=228.36 Aligned_cols=153 Identities=50% Similarity=0.789 Sum_probs=133.8
Q ss_pred EEeeceEEEEEEEEeecCCCCCccccccccccccccccccccc----cccCCCCCCCCcEEEEEECCEEEeeeeeeeCCC
Q 009008 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKI----ESHLSDKITSDPYVTVSICGAVIGRTFVISNSE 111 (546)
Q Consensus 36 ~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~ 111 (546)
.+||||+|+|+|++|++|++||..++.++++|.++........ ++...+.|++||||+|++++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 4789999999999999999999887778888887644332221 112235789999999999998888999999999
Q ss_pred CCeEeeEEEEeecCCCceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEee
Q 009008 112 SPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (546)
Q Consensus 112 nP~WNE~F~~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~ 188 (546)
||+|||+|.|++.+..+.|.|+|+|++.+++++||++.||++++..+...+.|++|.+.++++++..+.|+++++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999988888999999999999999999999999999988889999999998888888889999999994
No 9
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.96 E-value=4.1e-28 Score=257.50 Aligned_cols=225 Identities=21% Similarity=0.282 Sum_probs=169.0
Q ss_pred CcccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHH
Q 009008 215 PLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLK 294 (546)
Q Consensus 215 p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~ 294 (546)
+.+.||+++|+.||++ +|++++++|++||++|+|++| ++.++..+..|.++|+
T Consensus 3 ~~~~gN~v~ll~~G~e--------------------~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~~g~~l~~aL~ 55 (411)
T PRK11263 3 SWREGNRIQLLENGEQ--------------------YYPRVFEAIAAAQEEILLETF-------ILFEDKVGKQLHAALL 55 (411)
T ss_pred cccCCCeEEEEeCHHH--------------------HHHHHHHHHHHhCCEEEEEEE-------EEecCchHHHHHHHHH
Confidence 5678999999999987 899999999999999999999 7777788899999999
Q ss_pred hhhcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEE
Q 009008 295 IKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVV 374 (546)
Q Consensus 295 ~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vV 374 (546)
+||+|||+||||+ |..|+... +....+.|.++||++..+.+.. .++ ..+...+.|+|+|++|
T Consensus 56 ~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~----~~~-~~~~~~~~R~HrKiiV 117 (411)
T PRK11263 56 AAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRP----RLL-GMRTNLFRRMHRKIVV 117 (411)
T ss_pred HHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCcc----ccc-ccccccccCCcceEEE
Confidence 9999999999995 99887432 2456777899999998764331 111 1122334599999999
Q ss_pred EccCcccccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHH
Q 009008 375 VDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTN 454 (546)
Q Consensus 375 ID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~ 454 (546)
||+ ++|||||+|++++++.. ....+|+|+|++|+||+|.+++..
T Consensus 118 IDg--------~~a~vGg~N~~~~~~~~----------------------------~g~~~w~D~~v~i~Gp~V~~l~~~ 161 (411)
T PRK11263 118 IDG--------RIAFVGGINYSADHLSD----------------------------YGPEAKQDYAVEVEGPVVADIHQF 161 (411)
T ss_pred EcC--------CEEEEcCeEchHhhccc----------------------------cCCCCceEEEEEEECHHHHHHHHH
Confidence 999 79999999999876531 123479999999999999999999
Q ss_pred HHHHHhhccCCCCcccccCCCccccccccCCCcccCCCCcccccCCCCCceEEEEecccCCccc----CCCCCCHHHHhh
Q 009008 455 FEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSV----KGFPVEPRDATS 530 (546)
Q Consensus 455 F~~rW~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQv~Rs~~~~s~----~~~p~~~~~~~~ 530 (546)
|.+.|....... .+. .+.+. .+ ....+|...+|++-+.+.... ..|-..+..|.+
T Consensus 162 f~~~w~~~~~~~-----------~~~--~~~~~------~~--~~~~~g~~~~~~v~~~p~~~~~~i~~~~~~~i~~A~~ 220 (411)
T PRK11263 162 ELEALPGQSAAR-----------RWW--RRHHR------AE--ENRQPGEAQALLVWRDNEEHRDDIERHYLKALRQARR 220 (411)
T ss_pred HHHHHhhcccch-----------hhh--ccccc------Cc--ccCCCCCeEEEEEECCCcchHHHHHHHHHHHHHHhce
Confidence 999997532110 000 00000 00 012345668899877654221 124556889999
Q ss_pred cceEeeeEEEe
Q 009008 531 MVRISNIIWWL 541 (546)
Q Consensus 531 ~~~~~~~~~~~ 541 (546)
.++|++.||.+
T Consensus 221 ~I~I~tpYf~p 231 (411)
T PRK11263 221 EVIIANAYFFP 231 (411)
T ss_pred EEEEEecCcCC
Confidence 99999999975
No 10
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.90 E-value=3.8e-23 Score=183.52 Aligned_cols=118 Identities=18% Similarity=0.334 Sum_probs=103.9
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeEeeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQH 118 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~-t~nP~WNE~ 118 (546)
.|+|+|+|++|++|++.+ + |++||||+|.++++++ ||+++.+ +.||+|||+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~--------------------------g~sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~ 52 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-L--------------------------TRMDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKT 52 (121)
T ss_pred CcEEEEEEEEccCCCcCC-C--------------------------CCCCceEEEEECCEEE-EeEEccCCCCCCccCeE
Confidence 389999999999988665 2 4699999999999888 9999876 899999999
Q ss_pred EEEeecCCCceEEEEEEecCCcC-CeeeEeEEEece-eccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 119 FNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVE-KLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 119 F~~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~-~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
|.|++++....|.|+|+|+|.++ +++||.+.|+|. .+..|+..+.|++|...++++ ..|+|+|+++|
T Consensus 53 F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 53 IQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred EEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 99999877788999999999998 789999999995 577888889999998766653 45899999987
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=8.3e-22 Score=176.06 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=101.8
Q ss_pred EEEEEEEEeec---CCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeE
Q 009008 42 NLDIWVKEAKN---LPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 42 ~L~V~I~~A~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~ 118 (546)
.|+|+|++|++ |+.+|. .|++||||+|++++++. ||+++++++||+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~--------------------------~g~sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~ 53 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDG--------------------------RGSTDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQ 53 (126)
T ss_pred CeEEEEEEeECCcccccccc--------------------------CCCCCeeEEEEECCEEe-EcCcccCCCCCcceeE
Confidence 38999999999 676664 57899999999998877 9999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCc-------CCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEE
Q 009008 119 FNVPVAHSAAEVHFVVKDNDFV-------GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSL 183 (546)
Q Consensus 119 F~~~v~~~~~~l~~~V~D~d~~-------~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l 183 (546)
|.|++.+....|.|+|||++.+ ++++||++.|+|+++..+...+.||+|.+.++++.+..|+|+.
T Consensus 54 f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 54 YTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999988778999999999886 6899999999999999999999999999776655666777764
No 12
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.87 E-value=2.8e-21 Score=176.34 Aligned_cols=124 Identities=20% Similarity=0.377 Sum_probs=109.9
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F 119 (546)
...|.|.|+||++|+.+ .+|||+|.|++++++||+++.++.||.|||.|
T Consensus 10 ~~sL~v~V~EAk~Lp~~-------------------------------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F 58 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK-------------------------------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHF 58 (146)
T ss_pred EEEEEEEEEEccCCCCc-------------------------------CCceEEEEECCEEEEEEEEEcCCCCCcceeeE
Confidence 38899999999999854 37999999999999999999999999999999
Q ss_pred EEeecCCCceEEEEEEe-cCCc----CCeeeEeEEEeceeccCCCeeeeccccccCCCCc-------ccCCceEEEEEEe
Q 009008 120 NVPVAHSAAEVHFVVKD-NDFV----GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP-------CKAGAVLSLSIQY 187 (546)
Q Consensus 120 ~~~v~~~~~~l~~~V~D-~d~~----~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~-------~k~~g~I~l~l~f 187 (546)
.|.+.+....|+|+|++ .+.. ++++||.+.||+++|..+...+.||+|....+.+ ++..+.|+++++|
T Consensus 59 ~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf 138 (146)
T cd04013 59 EFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY 138 (146)
T ss_pred EecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence 99998888899999964 3333 4689999999999999999999999999888776 5566899999999
Q ss_pred ecccccc
Q 009008 188 TPVENMS 194 (546)
Q Consensus 188 ~P~~~~~ 194 (546)
.++..++
T Consensus 139 ~~~~~lP 145 (146)
T cd04013 139 QSTRVLP 145 (146)
T ss_pred EEeeeCC
Confidence 9987665
No 13
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=2.3e-21 Score=173.59 Aligned_cols=117 Identities=23% Similarity=0.372 Sum_probs=100.5
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|+|+|++|++|+.++. .|++||||+|.+++++. ||++++++.||+|||+|.|.
T Consensus 1 ~~V~V~~A~~L~~~d~--------------------------~g~~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~ 53 (126)
T cd08682 1 VQVTVLQARGLLCKGK--------------------------SGTNDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFE 53 (126)
T ss_pred CEEEEEECcCCcCCCC--------------------------CcCCCceEEEEECCeee-eeeeecCCCCCEeCceEEEE
Confidence 5799999999998775 56799999999998877 99999999999999999999
Q ss_pred ecC------CCceEEEEEEecCCcC-CeeeEeEEEeceecc--CCCeeeeccccccCCCCcccCCceEEEEEE
Q 009008 123 VAH------SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC--SGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (546)
Q Consensus 123 v~~------~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~--~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~ 186 (546)
+.. ....|.|+|||++.++ +++||++.|+|+++. .+.....|++|....++..+..|+|+|+++
T Consensus 54 v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 54 LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 876 3578999999999887 889999999999988 566788999998665544445689988764
No 14
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=7.4e-21 Score=169.02 Aligned_cols=119 Identities=27% Similarity=0.381 Sum_probs=106.4
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|.|+|++|++|+.+|. .|++||||++.+++..+.+|+++.++.||+|||+|.|.
T Consensus 2 L~v~v~~a~~L~~~d~--------------------------~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~ 55 (121)
T cd04042 2 LDIHLKEGRNLAARDR--------------------------GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLP 55 (121)
T ss_pred eEEEEEEeeCCCCcCC--------------------------CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEE
Confidence 7899999999998875 46799999999998777799999999999999999999
Q ss_pred ecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeec
Q 009008 123 VAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (546)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P 189 (546)
+.+..+.|.|+|||++.++ +++||++.++++++..+...+.|++|.+..+. +..|+|+|.+.|+|
T Consensus 56 v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 56 IEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred ecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 9877789999999999985 88999999999999988889999999876542 35689999999976
No 15
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.85 E-value=1.8e-20 Score=202.11 Aligned_cols=230 Identities=23% Similarity=0.260 Sum_probs=169.5
Q ss_pred ccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhh
Q 009008 217 RRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIK 296 (546)
Q Consensus 217 ~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~k 296 (546)
..++.++++.++.+ .|.+++++|++|+++|+++.| ++.++..+..+.++|.++
T Consensus 57 ~~~~~~~~l~~~~~--------------------~~~~~~~~i~~a~~~I~~~~~-------i~~~d~~~~~i~~~l~~~ 109 (438)
T COG1502 57 ISGNGVDLLKDGAD--------------------AFAALIELIEAAKKSIYLQYY-------IWQDDELGREILDALIEA 109 (438)
T ss_pred CCCCceEEecCHHH--------------------HHHHHHHHHHHHhhEEEEEEE-------EEeCChhHHHHHHHHHHH
Confidence 57899999999987 799999999999999999998 888988999999999999
Q ss_pred hcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCc-EEEEccCCCCCCccceeccccccccccccceEEE
Q 009008 297 SQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSV-QVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVV 375 (546)
Q Consensus 297 a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVI 375 (546)
+++||+||+|+ |..++... ........++++++ ++..+.+... .. ......+.++|+|++||
T Consensus 110 a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~-~~----~~~~~~~~r~H~K~~vi 172 (438)
T COG1502 110 AKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASP-RP----LRFRRLNRRLHRKIVVI 172 (438)
T ss_pred HHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccc-cc----chhhhhhccccceEEEE
Confidence 99999999996 99887211 12345667888998 6665533311 00 12234678999999999
Q ss_pred ccCcccccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHHH
Q 009008 376 DADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNF 455 (546)
Q Consensus 376 D~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F 455 (546)
|+ .++|+||.|+.++|+... ....+|+|++++++||+|.++..+|
T Consensus 173 D~--------~i~~vGg~N~~d~y~~~~---------------------------~~~~~~~D~~~~~~g~~v~~l~~~f 217 (438)
T COG1502 173 DG--------KVAFVGGANIGDEYFHKD---------------------------KGLGYWRDLHVRITGPAVADLARLF 217 (438)
T ss_pred cC--------CEEEecCcccchhhhccC---------------------------cCcccceeeeEEEECHHHHHHHHHH
Confidence 99 799999999999887531 1234999999999999999999999
Q ss_pred HHHHhhccCCCCcccccCCCccccccccCCCcccCCCCcccccCCCCCceEEEEecccCCccc--------CCCCCCHHH
Q 009008 456 EERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSV--------KGFPVEPRD 527 (546)
Q Consensus 456 ~~rW~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQv~Rs~~~~s~--------~~~p~~~~~ 527 (546)
.++|+......... .... .+.. .+...........+|++.+.|.... ..+-+.+..
T Consensus 218 ~~~w~~~~~~~~~~-------~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~ 281 (438)
T COG1502 218 IQDWNLESGSSKPL-------LALV----RPPL-----QSLSLLPVGRGSTVQVLSSGPDKGLGSELIELNRLLLKAINS 281 (438)
T ss_pred HHHhhhccCcCccc-------cccc----cccc-----ccccccccccCcceEEEecCCccccchhhhhHHHHHHHHHHh
Confidence 99999874432100 0000 0000 0000012223334899999987522 134566889
Q ss_pred HhhcceEeeeEEEe
Q 009008 528 ATSMVRISNIIWWL 541 (546)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (546)
|++.++|+..||-+
T Consensus 282 A~~~i~i~~pYf~~ 295 (438)
T COG1502 282 ARESILIATPYFVP 295 (438)
T ss_pred hceEEEEEcCCcCC
Confidence 99999999999854
No 16
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.83 E-value=4.9e-20 Score=163.98 Aligned_cols=119 Identities=24% Similarity=0.316 Sum_probs=101.5
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|.|+|++|++|+.++.. .|.+||||+|.++++.+++|+++++|+||+|||+|.|.
T Consensus 2 l~v~v~~a~~L~~~~~~-------------------------~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~ 56 (121)
T cd08401 2 LKIKIGEAKNLPPRSGP-------------------------NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFE 56 (121)
T ss_pred eEEEEEEccCCCCCCCC-------------------------CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEE
Confidence 78999999999977531 35689999999988877899999999999999999999
Q ss_pred ecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 123 VAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
+.+....|.|.|+|++.++ +++||++.++++++..+...+.|++|...... .+..|+|+++++|
T Consensus 57 v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~ 121 (121)
T cd08401 57 IPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDAD-SEVQGKVHLELRL 121 (121)
T ss_pred cCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCC-CcccEEEEEEEEC
Confidence 9876689999999999886 78999999999999888888999999753211 1246899998875
No 17
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.83 E-value=8e-20 Score=163.73 Aligned_cols=119 Identities=20% Similarity=0.331 Sum_probs=100.4
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
..|+|+|++|++|+..+ ++||||+|.+++..++||++. ++.||+|||+|.
T Consensus 4 ~~L~V~Vi~A~~L~~~~-----------------------------~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~ 53 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH-----------------------------VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFV 53 (126)
T ss_pred eEEEEEEEEeeCCCCCC-----------------------------CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEE
Confidence 56999999999998532 389999999998877799984 689999999999
Q ss_pred EeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeec
Q 009008 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (546)
Q Consensus 121 ~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P 189 (546)
|.+.... ..+.|.|+|++..+ +++||++.|||.++..+...+.|++|....+...+..|+|+|+++|.+
T Consensus 54 f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 54 FDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9865443 67899999998887 889999999999999888889999998654322345689999999975
No 18
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=8.1e-20 Score=168.50 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=103.3
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeEeeEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHFN 120 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~-t~nP~WNE~F~ 120 (546)
.|.|+|++|++|+.+|. .|++||||+|.++++.. +|+++.+ +.||+|||+|.
T Consensus 1 ~L~V~Vi~A~~L~~~d~--------------------------~g~sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~ 53 (150)
T cd04019 1 YLRVTVIEAQDLVPSDK--------------------------NRVPEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELM 53 (150)
T ss_pred CEEEEEEEeECCCCCCC--------------------------CCCCCeEEEEEECCEEe-eeEeccCCCCCCcccCcEE
Confidence 38999999999998886 46799999999998766 9999877 69999999999
Q ss_pred EeecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCC----CeeeeccccccCCC-----CcccCCceEEEEEEeec
Q 009008 121 VPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG----DKIEGAFPILNSSR-----KPCKAGAVLSLSIQYTP 189 (546)
Q Consensus 121 ~~v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g----~~~~~W~~L~~~~g-----~~~k~~g~I~l~l~f~P 189 (546)
|.+.++ .+.|.|+|+|++.++ +++||++.|+|+++..+ ...+.||+|.+..+ ++.+..|+|+|.+.|.+
T Consensus 54 f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 54 FVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 999765 368999999999875 88999999999998743 45689999987654 44566799999999964
No 19
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.82 E-value=6.6e-20 Score=161.97 Aligned_cols=116 Identities=18% Similarity=0.320 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeEeeEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHF 119 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~-t~nP~WNE~F 119 (546)
|+|+|+|++|++|++.+. .+.+||||+|.+++... +|+++.+ +.||+|||+|
T Consensus 1 g~L~V~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f 53 (118)
T cd08681 1 GTLVVVVLKARNLPNKRK--------------------------LDKQDPYCVLRIGGVTK-KTKTDFRGGQHPEWDEEL 53 (118)
T ss_pred CEEEEEEEEccCCCCCCc--------------------------CCCCCceEEEEECCCcc-ccccccCCCCCCccCceE
Confidence 789999999999998875 45689999999998655 9998765 7999999999
Q ss_pred EEeecCC-CceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 120 NVPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 120 ~~~v~~~-~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
.|.+.+. .+.|.|+|||++..++++||++.++++++..+...+.|++|... ++ ..|+|+++++|
T Consensus 54 ~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~-~~---~~G~i~l~l~f 118 (118)
T cd08681 54 RFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLK-GR---YAGEVYLELTF 118 (118)
T ss_pred EEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEeccC-Cc---EeeEEEEEEEC
Confidence 9999764 47899999999987788999999999998877778999999753 33 45899999886
No 20
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=3.9e-19 Score=159.18 Aligned_cols=122 Identities=18% Similarity=0.290 Sum_probs=103.0
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeeeCCCCCeEeeEEEE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~-~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
|.|+|++|++|+. . .|++||||++.++. ....||++++++.||+|||.|.|
T Consensus 1 l~v~v~~A~~L~~--~--------------------------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f 52 (126)
T cd08678 1 LLVKNIKANGLSE--A--------------------------AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLF 52 (126)
T ss_pred CEEEEEEecCCCC--C--------------------------CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEE
Confidence 6799999999985 2 46799999999974 23349999999999999999999
Q ss_pred eecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeecccc
Q 009008 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVEN 192 (546)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~~ 192 (546)
.+......|.|+|||++..+ +++||++.++++++..+.....|++|....+...+..|+|++++.|.+..+
T Consensus 53 ~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 53 ELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 99766788999999999887 889999999999999888788999997553322245689999999987654
No 21
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3.3e-19 Score=159.82 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|.|+|++|++|+..|. .|.+||||+|.+++++. ||++++++.||+|||+|.|
T Consensus 1 ~L~V~vi~A~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f 53 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG--------------------------QGSSSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVF 53 (127)
T ss_pred CeEEEEEEeeCCCCCCC--------------------------CCCcCcEEEEEECCEEe-cceeEcCCCCCccceEEEE
Confidence 38999999999998775 46699999999998877 9999999999999999999
Q ss_pred eecCCC----ceEEEEEEecCCc--CCeeeEeEEEeceecc-CCCeeeeccccccCCCCcccCCceEEEEEEee
Q 009008 122 PVAHSA----AEVHFVVKDNDFV--GSQIMGAVGIPVEKLC-SGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (546)
Q Consensus 122 ~v~~~~----~~l~~~V~D~d~~--~~d~IG~~~i~l~~l~-~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~ 188 (546)
.+.+.. ..|.|+|||++.+ ++++||++.|+++++. .+.....||+|..+ +...+..|+++|++.++
T Consensus 54 ~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 54 NVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEc
Confidence 987542 5799999999877 4789999999999987 56777899999754 22112458999999886
No 22
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=4.5e-19 Score=157.69 Aligned_cols=121 Identities=25% Similarity=0.357 Sum_probs=101.5
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeeeCCCCCeEeeEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~-~~~~rT~vi~~t~nP~WNE~F 119 (546)
|.|+|+|++|++|+..+.. .+.+||||+|.+++ ...++|++++++.||+|||+|
T Consensus 2 g~l~v~v~~a~~L~~~~~~-------------------------~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~ 56 (124)
T cd04044 2 GVLAVTIKSARGLKGSDII-------------------------GGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETK 56 (124)
T ss_pred eEEEEEEEcccCCCccccc-------------------------CCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEE
Confidence 8899999999999966532 35689999999988 566699999999999999999
Q ss_pred EEeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeec
Q 009008 120 NVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (546)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P 189 (546)
.|.+.+..+.|.|+|+|++..+ +++||++.++|.++..+...+.|...+...++ ..|+|+++++|.|
T Consensus 57 ~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k---~~G~i~~~l~~~p 124 (124)
T cd04044 57 YILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGK---PVGELNYDLRFFP 124 (124)
T ss_pred EEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCc---cceEEEEEEEeCC
Confidence 9998866789999999999876 78999999999999977666544443345555 3489999999976
No 23
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.80 E-value=8.7e-19 Score=154.88 Aligned_cols=117 Identities=22% Similarity=0.404 Sum_probs=100.7
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|+|+|++|++|+.++. .+.+||||+|.+++... +|++++++.||.|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~~~--------------------------~~~~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~ 53 (119)
T cd08377 1 GFLQVKVIRASGLAAADI--------------------------GGKSDPFCVLELVNARL-QTHTIYKTLNPEWNKIFT 53 (119)
T ss_pred CEEEEEEEeeeCCCCCCC--------------------------CCCCCcEEEEEECCEee-ecceecCCcCCccCcEEE
Confidence 789999999999998875 35689999999988765 999999999999999999
Q ss_pred EeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
|++.+....+.|+|+|++..+ +++||++.+++.++..+. ..|++|.+..++. +..|+|.++++|
T Consensus 54 ~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 54 FPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred EEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 999876789999999999865 889999999999987654 5799998654432 356899999887
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=6.3e-19 Score=156.81 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=96.3
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|.|+|++|++|+.+ . +||||+|.+++... ||++++++.||+|||+|.|.
T Consensus 2 L~V~Vi~a~~L~~~-~-----------------------------~Dpyv~v~l~~~~~-kT~v~~~t~nP~Wne~F~f~ 50 (121)
T cd08378 2 LYVRVVKARGLPAN-S-----------------------------NDPVVEVKLGNYKG-STKAIERTSNPEWNQVFAFS 50 (121)
T ss_pred EEEEEEEecCCCcc-c-----------------------------CCCEEEEEECCccc-cccccCCCCCCccceEEEEE
Confidence 89999999999865 2 79999999987654 99999999999999999999
Q ss_pred ecCC-CceEEEEEEecCCcCCeeeEeEEEeceeccCC-----CeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 123 VAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSG-----DKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 123 v~~~-~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g-----~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
+.+. ...|.|+|||++..++++||++.++++++... ...+.||+|.+..+. +..|+|+|+++|
T Consensus 51 ~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~ 119 (121)
T cd08378 51 KDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWF 119 (121)
T ss_pred cCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEe
Confidence 8764 57899999999988889999999999998753 235689999876552 456899999998
No 25
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.79 E-value=1.3e-18 Score=154.78 Aligned_cols=118 Identities=26% Similarity=0.434 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|.|+|++|++|+++|. .|++||||+|.+++..++||++++++.||+|||.|.|
T Consensus 1 ~l~v~vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~ 54 (121)
T cd04054 1 SLYIRIVEGKNLPAKDI--------------------------TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV 54 (121)
T ss_pred CEEEEEEEeeCCcCCCC--------------------------CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEE
Confidence 38999999999998886 4669999999999888889999999999999999999
Q ss_pred eecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCC-CeeeeccccccCCCCcccCCceEEEEEE
Q 009008 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG-DKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (546)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g-~~~~~W~~L~~~~g~~~k~~g~I~l~l~ 186 (546)
++.+..+.|.|.|+|++.++ +++||++.++++++..+ ...+.|++|....+.. ...|+|++.+.
T Consensus 55 ~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 55 HLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred eeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 99877789999999999887 78999999999888753 3478999996532211 23478887764
No 26
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.79 E-value=1.9e-18 Score=152.23 Aligned_cols=113 Identities=24% Similarity=0.343 Sum_probs=98.7
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|+|+|++|++|+.++. .+.+||||++.+++++. +|++++++.||+|||+|.|
T Consensus 1 ~~~V~v~~a~~L~~~~~--------------------------~~~~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f 53 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD--------------------------NGLSDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDL 53 (116)
T ss_pred CEEEEEEEEECCCCCCC--------------------------CCCCCcEEEEEECCEeE-ecccccCCCCCceeEEEEE
Confidence 37899999999998875 45689999999988766 9999999999999999999
Q ss_pred eecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEee
Q 009008 122 PVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (546)
Q Consensus 122 ~v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~ 188 (546)
.+.+. ...|.|+|||++.++ +++||++.++|+++..+...+.|++|... .|++++.+.|+
T Consensus 54 ~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 54 HLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 98765 588999999999886 88999999999999988889999999643 26888887764
No 27
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.79 E-value=1.7e-18 Score=182.29 Aligned_cols=142 Identities=20% Similarity=0.263 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCc
Q 009008 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (546)
..|++++++|++||++|+|++|.+ .+.++..+.+|.++|++||+|||+||||+ |..++.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~-----~~~~d~~g~~i~~aL~~aa~rGV~Vril~-D~~~~~--------------- 89 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCC-----NLRSTPEGRLILDKLKEAAESGVKVTILV-DEQSGD--------------- 89 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEe-----cccCCchHHHHHHHHHHhccCCCeEEEEe-cCCCCC---------------
Confidence 479999999999999999999921 26788899999999999999999999995 976431
Q ss_pred HHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCccc
Q 009008 330 EETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFK 409 (546)
Q Consensus 330 ~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~ 409 (546)
...+.|+++||++..+.... .+..+.+|.|++|||+ ++||+||+||+++++..
T Consensus 90 -~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg--------~~~y~Gg~Ni~~~~~~~------- 142 (369)
T PHA03003 90 -KDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDD--------RRCYIGNASLTGGSIST------- 142 (369)
T ss_pred -ccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcC--------cEEEEecCccCCcccCc-------
Confidence 24567889999987653210 0001235889999999 79999999999976642
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHHHHHHHhhccC
Q 009008 410 TLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASK 464 (546)
Q Consensus 410 ~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~ 464 (546)
....+.|+|. ||+|.+|+..|.+.|+.+++
T Consensus 143 --------------------~~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~ 172 (369)
T PHA03003 143 --------------------IKTLGVYSTY-----PPLATDLRRRFDTFKAFNKN 172 (369)
T ss_pred --------------------cccceeEecC-----cHHHHHHHHHHHHHHHhcCC
Confidence 1124589994 99999999999999997754
No 28
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.3e-18 Score=153.94 Aligned_cols=120 Identities=25% Similarity=0.361 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|+|+|++|++|+.+|.... + ...|++||||+|.+++.. .+|++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~------------------~--~~~g~~dPyv~v~~~~~~-~kT~~~~~t~~P~W~e~f~ 59 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG------------------G--LVKGKSDPYVIVRVGAQT-FKSKVIKENLNPKWNEVYE 59 (121)
T ss_pred CeEEEEEEEccCCcccccccc------------------c--CCCCCcCCEEEEEECCEe-EEccccCCCCCCcccceEE
Confidence 689999999999998775210 0 013679999999999855 4999999999999999999
Q ss_pred EeecC-CCceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 121 VPVAH-SAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 121 ~~v~~-~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
|.+.+ ..+.|.|+|+|++..++++||.+.++++++..+...+.|++|.+. ..|++++.++|
T Consensus 60 ~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 60 AVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 99864 457999999999987788999999999999887778999999643 23788888775
No 29
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.78 E-value=2.2e-18 Score=155.56 Aligned_cols=126 Identities=21% Similarity=0.350 Sum_probs=102.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeE
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~ 118 (546)
..|.|+|+|++|++|++.|..... -+ + ..+.+.+||||+|.++++++++|++++++.||+|||+
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~-----------~--~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~ 65 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH---AV-----------P--KKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEE 65 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh---cc-----------c--ccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCccee
Confidence 459999999999999987752100 00 0 0013679999999999988889999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccC--CCeeeeccccccCCCCcccCCceEEEEEEeec
Q 009008 119 FNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS--GDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (546)
Q Consensus 119 F~~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~--g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P 189 (546)
|.|.+. ..+.|.|.|+|++.++ +++||++.++|+++.. +...+.|++|. ..|.+++.+.+..
T Consensus 66 f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 66 FTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred EEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 999997 4578999999998876 7899999999999987 56779999995 1268899988853
No 30
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=4.5e-19 Score=161.68 Aligned_cols=97 Identities=29% Similarity=0.481 Sum_probs=89.2
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEee
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQ 117 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE 117 (546)
.+.|.|+|+|++|.||...|. .++|||||.+.+++++. ||+++++++||+|||
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~--------------------------~~sSDPyVVl~lg~q~l-kT~~v~~n~NPeWNe 55 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDF--------------------------LGSSDPYVVLELGNQKL-KTRVVYKNLNPEWNE 55 (168)
T ss_pred ccceEEEEEEEeecCeeeecc--------------------------ccCCCCeEEEEECCeee-eeeeecCCCCCcccc
Confidence 467999999999999998886 35599999999999999 999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCee
Q 009008 118 HFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKI 161 (546)
Q Consensus 118 ~F~~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~ 161 (546)
.|.|.+.++...|.++|||+|.++ +|+||.|.|+|..+......
T Consensus 56 ~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 56 ELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred eEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999999999999998 89999999999998865543
No 31
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.78 E-value=8.9e-19 Score=153.72 Aligned_cols=101 Identities=10% Similarity=0.167 Sum_probs=85.7
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeeeCCCCCe
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---AVIGRTFVISNSESPV 114 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~---~~~~rT~vi~~t~nP~ 114 (546)
...|.|.|+|++|++|+ + .|.+||||+|.|.. ....+|++.++|+||+
T Consensus 11 ~~~~~L~V~vikA~~L~-~----------------------------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPv 61 (118)
T cd08677 11 KQKAELHVNILEAENIS-V----------------------------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQ 61 (118)
T ss_pred CcCCEEEEEEEEecCCC-C----------------------------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCc
Confidence 45689999999999998 2 23489999999952 2344999999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeecccc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L 167 (546)
|||+|.|.++.. ...|.|+|+|+|.++ +++||++.++++++..+...+.|.+|
T Consensus 62 fnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 62 WEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999998753 367999999999998 89999999999998767777889765
No 32
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=1.5e-18 Score=153.69 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=85.4
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC-----C-EEEeeeeeeeCCCCCeE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC-----G-AVIGRTFVISNSESPVW 115 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~-----~-~~~~rT~vi~~t~nP~W 115 (546)
.|.|+|++|++|+.++ .|.+||||+|++- . .+..+|+++++++||+|
T Consensus 1 kL~V~Vi~A~~L~~~d---------------------------~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvw 53 (120)
T cd08395 1 KVTVKVVAANDLKWQT---------------------------TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKY 53 (120)
T ss_pred CEEEEEEECcCCCccc---------------------------CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCcc
Confidence 3899999999998765 2568999999983 1 23348999999999999
Q ss_pred eeEEEEeecCC----CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeecccccc
Q 009008 116 MQHFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (546)
Q Consensus 116 NE~F~~~v~~~----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~ 169 (546)
||+|.|.+... ...|.|.|+|++..+ +++||++.+|++++..++..+.|++|..
T Consensus 54 NE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 54 NETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred CcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 99999998642 256899999999776 7899999999999998888899999953
No 33
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.77 E-value=2.9e-18 Score=151.85 Aligned_cols=113 Identities=27% Similarity=0.373 Sum_probs=94.9
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCeEeeEEE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|+|++|++|++.+. .+++||||+|.+.+ ....||++++++.||+|||+|.
T Consensus 2 L~V~vi~a~~L~~~~~--------------------------~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~ 55 (119)
T cd04036 2 LTVRVLRATNITKGDL--------------------------LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFE 55 (119)
T ss_pred eEEEEEEeeCCCccCC--------------------------CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEE
Confidence 7899999999998775 35689999999963 3455999999999999999999
Q ss_pred EeecCC-CceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 121 VPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 121 ~~v~~~-~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
|.+... ...|.|+|||++.+++++||++.++++++..|...+.|++|..+ + .|++++.+.+
T Consensus 56 f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~-~-----~g~l~~~~~~ 117 (119)
T cd04036 56 FRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ-G-----KEELEVEFLL 117 (119)
T ss_pred EEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCC-C-----CceEEEEEEe
Confidence 998654 35799999999988888999999999999999999999999643 2 2566666554
No 34
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.77 E-value=2.8e-18 Score=183.92 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=125.1
Q ss_pred cCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhh
Q 009008 218 RGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS 297 (546)
Q Consensus 218 ~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka 297 (546)
.++.++++.+|.+ +|++|+++|++|+++|||++| ++.+|..+..|.++|.+|+
T Consensus 23 ~~~~v~~l~~~~~--------------------f~~~Ll~~I~~Ak~~I~l~~y-------~~~~D~~g~~il~AL~~a~ 75 (451)
T PRK09428 23 SPDDVETLYSPAD--------------------FRETLLEKIASAKKRIYIVAL-------YLEDDEAGREILDALYQAK 75 (451)
T ss_pred CcccEEEEcCHHH--------------------HHHHHHHHHHhcCCeEEEEEE-------EecCCchHHHHHHHHHHHH
Confidence 5689999999987 899999999999999999999 8888899999999999884
Q ss_pred --cCCCeEEEEEecCCccc-cccCCcccCccC-CCcHHHHHhhcCC--CcEEEEccCCCCCCccceeccccccccccccc
Q 009008 298 --QEGVRVLILAWDDPTSR-SILGYKTDGIMS-TNDEETRRFFKHS--SVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQK 371 (546)
Q Consensus 298 --~rGV~VriLvwD~~~s~-~~~~~~~~~~~~-~~~~~~~~~l~~~--gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK 371 (546)
++||+|+||+ |..... +.. |... ..+......|+++ ||++.++.... .....++++|+|
T Consensus 76 ~~~~gv~VrvLv-D~~Ra~Rg~i-----G~~~~~~~~~~~~~l~~~~~gv~v~~f~~p~---------~~~e~~gr~HrK 140 (451)
T PRK09428 76 QQNPELDIKVLV-DWHRAQRGLI-----GAAASNTNADWYCEMAQEYPGVDIPVYGVPV---------NTREALGVLHLK 140 (451)
T ss_pred hcCCCcEEEEEE-Eccccccccc-----ccCCCCcCHHHHHHHHHhCCCceEEEcCCcc---------ccchhhhhceee
Confidence 5899999996 974211 000 1110 1124455666654 68988772210 011356789999
Q ss_pred eEEEccCcccccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHH
Q 009008 372 TVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDI 451 (546)
Q Consensus 372 ~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl 451 (546)
++|||+ .++|+| +||++.|+.. ...+. .|.+++|+||++.++
T Consensus 141 i~IiD~--------~v~ysG-aNi~d~Yl~~---------------------------~~~~r--~Dry~~i~g~~la~~ 182 (451)
T PRK09428 141 GFIIDD--------TVLYSG-ASLNNVYLHQ---------------------------HDKYR--YDRYHLIRNAELADS 182 (451)
T ss_pred EEEECC--------CEEEec-ccccHHHhcC---------------------------CcccC--cceEEEEeCchHHHH
Confidence 999999 799997 7999977642 01111 266888999999999
Q ss_pred HHHHHHHHhhccC
Q 009008 452 LTNFEERWLKASK 464 (546)
Q Consensus 452 ~~~F~~rW~~~~~ 464 (546)
...|.+.|..+++
T Consensus 183 ~~~fi~~~~~~~~ 195 (451)
T PRK09428 183 MVNFIQQNLLNSP 195 (451)
T ss_pred HHHHHHHHhhccC
Confidence 9999999987654
No 35
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=4.3e-18 Score=153.61 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=98.9
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeeeCCCCCeE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA------VIGRTFVISNSESPVW 115 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~------~~~rT~vi~~t~nP~W 115 (546)
+|+|+|++|++|+.+|. .+.+||||+|.+.+. ...+|++++++.||+|
T Consensus 1 ~L~v~Vi~a~~L~~~d~--------------------------~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~W 54 (133)
T cd04033 1 ILRVKVLAGIDLAKKDI--------------------------FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKW 54 (133)
T ss_pred CEEEEEEEeECCCcccC--------------------------CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcE
Confidence 48999999999998875 356899999999754 2349999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCC------eeeeccccccCCCCcccCCceEEEEEEe
Q 009008 116 MQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD------KIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 116 NE~F~~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~------~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
||+|.|.+......|.|+|+|++.++ +++||++.++++++..+. ....||+|....+. .+..|+|++++.|
T Consensus 55 ne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~ 132 (133)
T cd04033 55 NEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAY 132 (133)
T ss_pred eeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEee
Confidence 99999998766778999999999887 789999999999988643 24689999754322 1356899999988
No 36
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=4.7e-18 Score=152.06 Aligned_cols=122 Identities=22% Similarity=0.361 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|.|+|++|++|+..+.. +.+.+||||+|.+++++. +|++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~------------------------~~~~~dPyv~v~~~~~~~-kT~~~~~t~~P~Wne~f~ 55 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS------------------------GKGKSDPYAILSVGAQRF-KTQTIPNTLNPKWNYWCE 55 (128)
T ss_pred CEEEEEEEEeeCCCcccCC------------------------CCCCcCCeEEEEECCEEE-ecceecCCcCCccCCcEE
Confidence 7899999999999977641 135689999999987766 999999999999999999
Q ss_pred EeecC-CCceEEEEEEecCCcC-CeeeEeEEEeceeccC---CCeeeeccccccCCC-CcccCCceEEEEEEe
Q 009008 121 VPVAH-SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILNSSR-KPCKAGAVLSLSIQY 187 (546)
Q Consensus 121 ~~v~~-~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~---g~~~~~W~~L~~~~g-~~~k~~g~I~l~l~f 187 (546)
|++.+ ..+.|.|+|||++..+ +++||++.|++.++.. ....+.|++|.+... +.....|+|+|++.+
T Consensus 56 ~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 56 FPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99986 4689999999999885 8899999999999873 344679999986532 112345888888764
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.77 E-value=5.4e-18 Score=150.99 Aligned_cols=116 Identities=28% Similarity=0.394 Sum_probs=96.3
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|+|+|++|++|+.+|. .+.+||||+|.+++... +|++++++.||+|||+|.|.
T Consensus 2 L~v~vi~a~~L~~~d~--------------------------~~~~DPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~ 54 (123)
T cd04025 2 LRCHVLEARDLAPKDR--------------------------NGTSDPFVRVFYNGQTL-ETSVVKKSCYPRWNEVFEFE 54 (123)
T ss_pred EEEEEEEeeCCCCCCC--------------------------CCCcCceEEEEECCEEE-eceeecCCCCCccCcEEEEE
Confidence 8999999999998875 45689999999988766 99999999999999999999
Q ss_pred ecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCc---ccCCceEEEEE
Q 009008 123 VAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP---CKAGAVLSLSI 185 (546)
Q Consensus 123 v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~---~k~~g~I~l~l 185 (546)
+.+. ...|.|+|+|++.++ +++||.+.++|.++..+...+.|+.|.....++ -+..|.|++.+
T Consensus 55 ~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 55 LMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 8765 478999999999887 789999999999998777778999997532221 12346666654
No 38
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.76 E-value=2.3e-18 Score=150.54 Aligned_cols=101 Identities=30% Similarity=0.456 Sum_probs=88.2
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeE-eeEEEE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVW-MQHFNV 121 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~W-NE~F~~ 121 (546)
|+|+|++|++|+.++.. .+.+||||+|.+++... ||++++++.||+| ||+|.|
T Consensus 1 l~V~v~~a~~L~~~d~~-------------------------~~~~Dpyv~v~~~~~~~-kT~v~~~~~nP~W~ne~f~f 54 (110)
T cd08688 1 LKVRVVAARDLPVMDRS-------------------------SDLTDAFVEVKFGSTTY-KTDVVKKSLNPVWNSEWFRF 54 (110)
T ss_pred CEEEEEEEECCCccccC-------------------------CCCCCceEEEEECCeeE-ecceecCCCCCcccCcEEEE
Confidence 68999999999988741 46689999999988555 9999999999999 999999
Q ss_pred eecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccC---CCeeeecccccc
Q 009008 122 PVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILN 169 (546)
Q Consensus 122 ~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~---g~~~~~W~~L~~ 169 (546)
.+.+. .+.|.|+|+|++.++ +++||++.++++++.. +...+.||+|++
T Consensus 55 ~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 55 EVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 98764 368999999999887 7899999999999986 456899999986
No 39
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=8.2e-18 Score=152.72 Aligned_cols=114 Identities=21% Similarity=0.327 Sum_probs=95.9
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|.|+|++|++|+++|. .|++||||+|.++.+.. +|++++++.||.|||+|.
T Consensus 15 G~L~V~Vi~A~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~-kT~vi~~t~nP~Wne~f~ 67 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNS--------------------------NGKSDPYCEVSMGSQEH-KTKVVSDTLNPKWNSSMQ 67 (136)
T ss_pred EEEEEEEEEeeCCCCCCC--------------------------CCCcCcEEEEEECCEee-eccccCCCCCCccCceEE
Confidence 899999999999998875 45699999999988766 999999999999999999
Q ss_pred EeecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccC-----CCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 121 VPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS-----GDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 121 ~~v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~-----g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
|.+.+. ...|.|+|||++.++ +++||++.++++++.. ......|.++. + +..|+|+|++.|
T Consensus 68 f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~---~~~g~i~l~~~~ 135 (136)
T cd08375 68 FFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---E---VPTGEVVVKLDL 135 (136)
T ss_pred EEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c---ccceeEEEEEEe
Confidence 998764 468999999999887 8899999999999885 33445666663 2 234789998876
No 40
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=8.8e-18 Score=150.51 Aligned_cols=106 Identities=32% Similarity=0.566 Sum_probs=93.2
Q ss_pred CCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCe
Q 009008 85 KITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK 160 (546)
Q Consensus 85 ~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~ 160 (546)
.|++||||+|.+++.+. +|++++++.||+|||+|.|++.+. .+.|.|+|||++..+ +++||++.++++++..+..
T Consensus 12 ~g~~Dpyv~v~~~~~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 90 (127)
T cd08373 12 KGKGDRIAKVTFRGVKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL 90 (127)
T ss_pred CCCCCCEEEEEECCEee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCc
Confidence 35689999999988776 999999999999999999998753 578999999999886 7899999999999998888
Q ss_pred eeeccccccCCCCcccCCceEEEEEEeeccccc
Q 009008 161 IEGAFPILNSSRKPCKAGAVLSLSIQYTPVENM 193 (546)
Q Consensus 161 ~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~~~ 193 (546)
...|++|.+..+++ ..++++++++|.|....
T Consensus 91 ~~~~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 91 LEVTEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred eEEEEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 89999998777664 34799999999987654
No 41
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=4.3e-18 Score=147.47 Aligned_cols=98 Identities=26% Similarity=0.506 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|.|+|++|++|+..+. ++.+||||+|.++++.. +|++++++.||+|||+|.|.
T Consensus 2 L~V~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~ 54 (105)
T cd04050 2 LFVYLDSAKNLPLAKS--------------------------TKEPSPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFL 54 (105)
T ss_pred EEEEEeeecCCCCccc--------------------------CCCCCcEEEEEECCEEE-eCccccCCCCCcccceEEEE
Confidence 8999999999997764 46799999999998666 99999999999999999999
Q ss_pred ecCC-CceEEEEEEecCCcCCeeeEeEEEeceeccCCC--eeeecccccc
Q 009008 123 VAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGD--KIEGAFPILN 169 (546)
Q Consensus 123 v~~~-~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~--~~~~W~~L~~ 169 (546)
+.++ .+.|.|+|+|++. +++||++.|+|+++..++ ..+.||+|.+
T Consensus 55 v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 55 VRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred eCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9874 5789999999887 789999999999988643 6789999964
No 42
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=4.7e-18 Score=151.40 Aligned_cols=103 Identities=25% Similarity=0.362 Sum_probs=88.1
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCC
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESP 113 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP 113 (546)
+..+.|.|+|++|++|+.++ . +.+||||+|.+.. ....||++++++.||
T Consensus 10 y~~~~L~V~Vi~A~~L~~~~-~--------------------------~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP 62 (122)
T cd08381 10 YKNGTLFVMVMHAKNLPLLD-G--------------------------SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNP 62 (122)
T ss_pred EeCCEEEEEEEEeeCCCCCC-C--------------------------CCCCCEEEEEEeeCCccCCceeCCccCCCCCC
Confidence 34789999999999999876 2 4589999999952 234499999999999
Q ss_pred eEeeEEEEee-cC---CCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeecccc
Q 009008 114 VWMQHFNVPV-AH---SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (546)
Q Consensus 114 ~WNE~F~~~v-~~---~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L 167 (546)
+|||+|.|++ +. ....|.|+|||++.++ +++||++.|+|+++..++..+.||+|
T Consensus 63 ~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 63 TFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999986 32 2468999999999887 88999999999999988778899987
No 43
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=3.2e-18 Score=151.86 Aligned_cols=104 Identities=20% Similarity=0.307 Sum_probs=88.4
Q ss_pred EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCC
Q 009008 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSES 112 (546)
Q Consensus 37 ~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~n 112 (546)
-+.++.|.|+|++|+||+.++ .|.+||||+|.+.. ....||++++++.|
T Consensus 8 ~~~~~~L~V~Vi~ar~L~~~~---------------------------~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~ 60 (119)
T cd08685 8 EGQNRKLTLHVLEAKGLRSTN---------------------------SGTCNSYVKISLSPDKEVRFRQKTSTVPDSAN 60 (119)
T ss_pred EEcCCEEEEEEEEEECCCCCC---------------------------CCCCCeeEEEEEEeCCCCcceEeCccccCCCC
Confidence 346799999999999999776 24589999999953 33459999999999
Q ss_pred CeEeeEEEEeecCC--CceEEEEEEecCCcC--CeeeEeEEEeceeccCCCeeeecccc
Q 009008 113 PVWMQHFNVPVAHS--AAEVHFVVKDNDFVG--SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (546)
Q Consensus 113 P~WNE~F~~~v~~~--~~~l~~~V~D~d~~~--~d~IG~~~i~l~~l~~g~~~~~W~~L 167 (546)
|+|||+|.|++.+. ...|.|+|||.+..+ +++||.+.||+.++..+...+.||.|
T Consensus 61 P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 61 PLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 99999999998653 357899999988764 68999999999999888888999986
No 44
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=6.1e-18 Score=154.77 Aligned_cols=110 Identities=20% Similarity=0.289 Sum_probs=91.7
Q ss_pred EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeeeCCCC
Q 009008 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSES 112 (546)
Q Consensus 37 ~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~--~~~rT~vi~~t~n 112 (546)
.+..|.|.|+|++|+||+.++-. .|.+||||++++. +. ...||+++++++|
T Consensus 25 ~y~~~~L~V~Vi~ArnL~~~~~~-------------------------~g~sDPYVKv~Llp~~~~~~k~KT~v~kktln 79 (146)
T cd04028 25 YDKKGQLEVEVIRARGLVQKPGS-------------------------KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLD 79 (146)
T ss_pred EeCCCEEEEEEEEeeCCCcccCC-------------------------CCCcCCeEEEEEECCCccccceeceecCCCCC
Confidence 34679999999999999876421 4669999999993 32 2449999999999
Q ss_pred CeEeeEEEEeecCCCceEEEEEE-ecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCC
Q 009008 113 PVWMQHFNVPVAHSAAEVHFVVK-DNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (546)
Q Consensus 113 P~WNE~F~~~v~~~~~~l~~~V~-D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~ 171 (546)
|+|||+|.|.+......|.|+|| |++.++ +++||++.|+|+++..+.....||+|....
T Consensus 80 PvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 80 PLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 99999999999856688999999 577665 789999999999997777888999998543
No 45
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=5.6e-18 Score=151.08 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEeeeeeeeCCCCCeEee
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIGRTFVISNSESPVWMQ 117 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~rT~vi~~t~nP~WNE 117 (546)
.|.|.|+|++|++|+.++. .|++||||+|.+ ++...+||++++++.||+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne 68 (124)
T cd08387 15 MGILNVKLIQARNLQPRDF--------------------------SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDE 68 (124)
T ss_pred CCEEEEEEEEeeCCCCCCC--------------------------CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCccc
Confidence 4889999999999998775 456999999999 445566999999999999999
Q ss_pred EEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 118 HFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 118 ~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
+|.|.+... ...|.|+|+|++.++ +++||++.|+|+++..++..+.|++|.
T Consensus 69 ~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 69 SFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999998654 368999999999887 889999999999998877889999985
No 46
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=9.5e-18 Score=148.71 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=85.7
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
+.|.|+|++|++|+.++ ..||||+|++++++. +|+++++ .||+|||+|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----------------------------~~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F~ 50 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----------------------------KFNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDFM 50 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----------------------------CCCCeEEEEECCEEe-EeeECCC-CCCceeeEEE
Confidence 68999999999997543 369999999998776 9999987 5999999999
Q ss_pred EeecCCCceEEEEEEecCCcCCeeeEeEEEeceeccCCCee--eeccccc
Q 009008 121 VPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKI--EGAFPIL 168 (546)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~--~~W~~L~ 168 (546)
|.+.+....|.|+|||++.+++++||++.|||+++..+... ..||+|.
T Consensus 51 F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 51 FEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 99988777899999999988899999999999999866544 7899996
No 47
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.74 E-value=9.5e-18 Score=149.54 Aligned_cols=104 Identities=29% Similarity=0.340 Sum_probs=90.4
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeEe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWM 116 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~~~rT~vi~~t~nP~WN 116 (546)
..+.|.|+|++|++|+.++. .+.+||||+|.+. +.+..||++++++.||+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~--------------------------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn 67 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDM--------------------------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 67 (124)
T ss_pred CCCEEEEEEEEeeCCCCccC--------------------------CCCCCCEEEEEEEcCCCCceecccCcCCCCCcee
Confidence 45899999999999998775 4568999999994 2345599999999999999
Q ss_pred eEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
|+|.|.+... ...|.|+|||++.++ +++||++.++|+++..+...++|++|.
T Consensus 68 e~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 68 ETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999998652 368999999999887 789999999999998888889999985
No 48
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.74 E-value=1.2e-17 Score=149.48 Aligned_cols=105 Identities=26% Similarity=0.408 Sum_probs=89.4
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~ 114 (546)
..|.|.|+|++|++|+.++.. .|.+||||+|.+.. ....||++++++.||+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~-------------------------~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~ 67 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEA-------------------------KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPV 67 (125)
T ss_pred CCCeEEEEEEEecCCCccCCC-------------------------CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCc
Confidence 468899999999999877641 46799999999942 2234999999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++......+.|++|.
T Consensus 68 wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 68 YNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999998652 467999999999887 789999999999998888889999983
No 49
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=4e-17 Score=146.20 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=99.5
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F 119 (546)
+..|+|+|++|++|+..|. .|.+||||+|.++++.. +|++++++.||+|||.|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~--------------------------~g~~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f 54 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS--------------------------GGGADPYVIIKCEGESV-RSPVQKDTLSPEFDTQA 54 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC--------------------------CCCcCccEEEEECCEEE-EeCccCCCCCCcccceE
Confidence 4679999999999998775 45699999999998877 99999999999999999
Q ss_pred EEeecCCCceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCC-cccCCceEEEEEEeec
Q 009008 120 NVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK-PCKAGAVLSLSIQYTP 189 (546)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~-~~k~~g~I~l~l~f~P 189 (546)
.|.+......|.|+|||++.+++++||.+.+++.++.. ....|++|.....+ .-+..|.|.+++.+.+
T Consensus 55 ~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 55 IFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99988777899999999998889999999999987643 34567888532111 1134589999888754
No 50
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.3e-17 Score=145.35 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=81.5
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|.|+|++|++|+..+...+ .++++||||+|.+++... ||++++++.||+|||.|.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~----------------------~~~~~DPYv~v~~~~~~~-kT~v~~~t~nPvWne~f~ 57 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR----------------------TGFDMDPFVIISFGRRVF-RTSWRRHTLNPVFNERLA 57 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC----------------------CCCccCceEEEEECCEeE-eeeeecCCCCCcccceEE
Confidence 789999999999998774211 134689999999987766 999999999999999999
Q ss_pred EeecCC--CceEEEEEEecCCcC-CeeeEeEEEeceeccCCC
Q 009008 121 VPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD 159 (546)
Q Consensus 121 ~~v~~~--~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~ 159 (546)
|.+.+. ...|.|.|||++.++ +++||++.++|++|..++
T Consensus 58 f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 58 FEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 997653 357899999999887 889999999999998654
No 51
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=1.8e-17 Score=147.26 Aligned_cols=104 Identities=33% Similarity=0.543 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|+|+|++|++|++.+. .+.+||||+|.+++...++|++++++.||+|||+|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~ 54 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG--------------------------VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLY 54 (120)
T ss_pred CeEEEEEEeeECCCCccC--------------------------CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEE
Confidence 689999999999998775 456999999999887777999999999999999999
Q ss_pred EeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCC
Q 009008 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (546)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~ 171 (546)
|++.+..+.|.|+|+|++.++ +++||++.+++.++..+ ..+.||.|++..
T Consensus 55 ~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 55 VPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999887789999999999887 77999999999999876 668999998765
No 52
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=6.8e-18 Score=151.04 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=88.1
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
.+.|.|+|++|+||+.+|.. .|.+||||+|.+.. ....||++++++.||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~-------------------------~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~ 68 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPK-------------------------KQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVF 68 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCC-------------------------CCCCCcEEEEEEEcCCCccccccCccCcCCCCCcc
Confidence 46899999999999988751 26799999999942 22349999999999999
Q ss_pred eeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 116 NE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
||+|.|++... ...|.|+|||++.++ +++||++.|+|.++..+.....||+|.
T Consensus 69 nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 69 NETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999998642 368999999999887 789999999999998777778999984
No 53
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=1.3e-17 Score=145.91 Aligned_cols=100 Identities=26% Similarity=0.335 Sum_probs=84.6
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCeEeeE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~rT~vi~~t~nP~WNE~ 118 (546)
|+|+|+|++|++|+.+|.. .+++||||+|.+.+ ....+|++++++.||+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~-------------------------~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~ 55 (111)
T cd04041 1 GVLVVTIHRATDLPKADFG-------------------------TGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEET 55 (111)
T ss_pred CEEEEEEEEeeCCCcccCC-------------------------CCCCCccEEEEEccCCCccEeeeeECCCCCCcccee
Confidence 7899999999999988752 15699999999943 34569999999999999999
Q ss_pred EEEeecCC----CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 119 FNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 119 F~~~v~~~----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
|.|.+... ...|.|+|||++.++ +++||++.+++++|.. ..+|+++.
T Consensus 56 f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 56 WFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred EEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 99987543 468999999999887 7999999999999983 34788874
No 54
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.73 E-value=3.8e-17 Score=174.56 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHhccceEEEEEEeecceeeEEeCCC----CchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCcc
Q 009008 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~----~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~ 325 (546)
.+++.+.++|.+||++|+|+.|.|. .++. .+.+|.++|++||+|||+||||+ |..+. +
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~------~~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~---~-------- 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWS------LSDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNK---P-------- 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEe------cCccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCC---c--------
Confidence 3799999999999999999998432 1332 36899999999999999999995 86431 1
Q ss_pred CCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCC
Q 009008 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (546)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H 405 (546)
....+.|.++||++..+.+.. ....++|+|++|||+ +++|+||+|+.+.+. .
T Consensus 88 ----~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg--------~~~~iGS~Nid~rsl-~--- 139 (424)
T PHA02820 88 ----LKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDN--------THIYLGSANMDWRSL-T--- 139 (424)
T ss_pred ----hhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECC--------CEEEEeCCcCChhhh-h---
Confidence 123456888999998764221 123579999999999 799999999976432 1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccc--cChHHHHHHHHHHHHHhhccCCCCcccccCCCcccccccc
Q 009008 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRI--DGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLE 483 (546)
Q Consensus 406 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i--~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~l~~~~ 483 (546)
..+|+++++ +||+|.+|+..|.+.|+..++.. ... + ...
T Consensus 140 -----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~-~~~---~-~~~----- 180 (424)
T PHA02820 140 -----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL-PYN---W-KNF----- 180 (424)
T ss_pred -----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC-CCc---c-ccc-----
Confidence 114666666 79999999999999999765321 000 0 000
Q ss_pred CCCcccCCCCcccccCCCCCceEEEEecccCCccc--------CCCCCCHHHHhhcceEeeeEEEe
Q 009008 484 RIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSV--------KGFPVEPRDATSMVRISNIIWWL 541 (546)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~vQv~Rs~~~~s~--------~~~p~~~~~~~~~~~~~~~~~~~ 541 (546)
+|....+ ..|.. ....+....|++-|.+.... ..|...+..|.+.++|..-||-+
T Consensus 181 -~~~~~~~-~~p~~-~~~~~~~~~~~~sssP~~~~~~~r~~~~~~~l~~I~~Ak~~I~I~tpyfvP 243 (424)
T PHA02820 181 -YPLYYNT-DHPLS-LNVSGVPHSVFIASAPQQLCTMERTNDLTALLSCIRNASKFVYVSVMNFIP 243 (424)
T ss_pred -ccccccc-CCCcc-cccCCccceEEEeCCChhhcCCCCCchHHHHHHHHHHHhhEEEEEEccccc
Confidence 0110000 01110 01122223455555554211 22345588999999999988844
No 55
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=1.9e-17 Score=152.48 Aligned_cols=104 Identities=27% Similarity=0.389 Sum_probs=82.3
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|.|+|++|++|+.+|.... .+++. ..+ ....+.+||||+|.++++++ ||++++++.||+|||+|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~-------~~~---~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f 67 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK-------AFL---GEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVF 67 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee-------ccc---cCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEE
Confidence 37999999999999985320 00000 000 01256789999999999887 9999999999999999999
Q ss_pred eec--CCCceEEEEEEecCCcC-CeeeEeEEEeceeccCC
Q 009008 122 PVA--HSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG 158 (546)
Q Consensus 122 ~v~--~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g 158 (546)
++. +..+.|.|+|+|+|..+ +++||++.|+++++...
T Consensus 68 ~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 68 PEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 864 34578999999999885 89999999999998754
No 56
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=8.1e-17 Score=145.97 Aligned_cols=118 Identities=25% Similarity=0.293 Sum_probs=96.0
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|+|+|++|++|+.+|. .|.+||||+|.+++.+. ||++++++.||+|||+|.|
T Consensus 2 ~l~v~V~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~~~f 54 (135)
T cd04017 2 QLRAYIYQARDLLAADK--------------------------SGLSDPFARVSFLNQSQ-ETEVIKETLSPTWDQTLIF 54 (135)
T ss_pred EEEEEEEEeecCcCCCC--------------------------CCCCCCEEEEEECCeee-EeeeEcCCCCCccCcEEEE
Confidence 48999999999998886 46799999999988766 9999999999999999999
Q ss_pred eecCC----------CceEEEEEEecCCcC-CeeeEeEEE-eceeccC---CCeeeeccccccCCCCcccCCceEEEEEE
Q 009008 122 PVAHS----------AAEVHFVVKDNDFVG-SQIMGAVGI-PVEKLCS---GDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (546)
Q Consensus 122 ~v~~~----------~~~l~~~V~D~d~~~-~d~IG~~~i-~l~~l~~---g~~~~~W~~L~~~~g~~~k~~g~I~l~l~ 186 (546)
.+... ...|.|+|+|++..+ +++||++.+ |+..+.. +.....|++|... +. ..|+|.++++
T Consensus 55 ~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~-~~---~~Geil~~~~ 130 (135)
T cd04017 55 DEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG-GQ---SAGELLAAFE 130 (135)
T ss_pred eeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC-CC---chhheeEEeE
Confidence 74321 256899999999887 789999987 5555543 4567899999643 32 3489999999
Q ss_pred eecc
Q 009008 187 YTPV 190 (546)
Q Consensus 187 f~P~ 190 (546)
+.++
T Consensus 131 ~~~~ 134 (135)
T cd04017 131 LIEV 134 (135)
T ss_pred EEEe
Confidence 8775
No 57
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=4.5e-17 Score=149.69 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=85.4
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeeeCCCCCeEeeE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA----VIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~----~~~rT~vi~~t~nP~WNE~ 118 (546)
|.|+|++|++|+. . .|.+||||+|.+.+. ...+|++++++.||+|||+
T Consensus 2 L~V~Vi~ArnL~~--~--------------------------~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~ 53 (148)
T cd04010 2 LSVRVIECSDLAL--K--------------------------NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEA 53 (148)
T ss_pred EEEEEEeCcCCCC--C--------------------------CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceE
Confidence 8999999999985 2 467999999999652 2339999999999999999
Q ss_pred EEEeec---------------CC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCC-CeeeeccccccCCCC
Q 009008 119 FNVPVA---------------HS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG-DKIEGAFPILNSSRK 173 (546)
Q Consensus 119 F~~~v~---------------~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g-~~~~~W~~L~~~~g~ 173 (546)
|.|.+. +. ...|.|.|||++..+ +++||++.|+++++..+ .....||+|.....+
T Consensus 54 F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 54 FYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred EEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 999984 11 257899999999876 88999999999999876 667899999765443
No 58
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.72 E-value=3.5e-17 Score=146.02 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=87.1
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C---EEEeeeeeeeCCCCC
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G---AVIGRTFVISNSESP 113 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~---~~~~rT~vi~~t~nP 113 (546)
..+.|.|+|++|+||+.++. ++.+||||+|.|- + ....||++++++.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~--------------------------~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nP 65 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSI--------------------------PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKP 65 (124)
T ss_pred CCCEEEEEEeEecCCccccc--------------------------CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCC
Confidence 45789999999999998764 5679999999993 2 234599999999999
Q ss_pred eEeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCC-Ceeeecccc
Q 009008 114 VWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG-DKIEGAFPI 167 (546)
Q Consensus 114 ~WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g-~~~~~W~~L 167 (546)
+|||+|.|+++.. ...|.|+|||++..+ +++||++.|+|+++... .....||+|
T Consensus 66 vfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 66 VFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred ccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999998753 478999999999877 78999999999999644 457889986
No 59
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.3e-16 Score=170.18 Aligned_cols=200 Identities=23% Similarity=0.212 Sum_probs=148.2
Q ss_pred EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCe
Q 009008 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPV 114 (546)
Q Consensus 37 ~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~rT~vi~~t~nP~ 114 (546)
-..+..|.|+|++|++|+.+|. +|++||||++.+.. ....+|++.++++||+
T Consensus 163 d~~~~~L~V~V~qa~~Lp~~d~--------------------------~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~ 216 (421)
T KOG1028|consen 163 DFELNLLTVRVIQAHDLPAKDR--------------------------GGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPV 216 (421)
T ss_pred cccCCEEEEEEEEecCCCcccC--------------------------CCCCCCeeEEEEcCCCCCcceeeeeecCcCCc
Confidence 4577889999999999999883 56799999999954 2334999999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeecc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~ 190 (546)
|||+|.|.++.. ...|.|+|||.|.++ +++||++.++|..+........|.+|...........|+|.++++|.|.
T Consensus 217 fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 217 FNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred cccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecC
Confidence 999999997654 478999999999998 8999999999998887766788999986533333334799999999998
Q ss_pred cc-cccccc---CcCCCCCccCCCCCCCCcccCceEEEeeccccCCCCCCeEEecCCccccchhh-HHHHHHHHHhccce
Q 009008 191 EN-MSLYYR---GVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQDVYDAINQARRL 265 (546)
Q Consensus 191 ~~-~~~~~~---g~~~~~~~~~~~~~~~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~-f~~l~~aI~~Ak~~ 265 (546)
.. +..+.- .... .+..+.+++| .++.++.++....+.++.++....++++++.+ |.-=.+.++. -+
T Consensus 297 ~g~ltv~v~kar~L~~-~~~~~~~d~~------Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~--~~ 367 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKS-MDVGGLSDPY------VKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE--VS 367 (421)
T ss_pred CCeEEEEEEEecCCCc-ccCCCCCCcc------EEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe--eE
Confidence 54 223221 1111 2333444433 47889998877778888999999998876665 4221222332 35
Q ss_pred EEEEEE
Q 009008 266 IYITGW 271 (546)
Q Consensus 266 I~I~~w 271 (546)
|.|+.|
T Consensus 368 l~l~V~ 373 (421)
T KOG1028|consen 368 LELTVW 373 (421)
T ss_pred EEEEEE
Confidence 555555
No 60
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=7.5e-17 Score=143.83 Aligned_cols=116 Identities=17% Similarity=0.255 Sum_probs=92.3
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|+|+|++|++|+.++. .+.+||||+|.+++....||++++++.||+|||+|.|+
T Consensus 2 l~v~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~ 55 (123)
T cd08382 2 VRLTVLCADGLAKRDL--------------------------FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLT 55 (123)
T ss_pred eEEEEEEecCCCccCC--------------------------CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEE
Confidence 7999999999998775 35699999999976556699999999999999999999
Q ss_pred ecCCCceEEEEEEecCCcC---CeeeEeEEEeceeccCCC-eeeeccccccCCCCc-ccCCceEEEEE
Q 009008 123 VAHSAAEVHFVVKDNDFVG---SQIMGAVGIPVEKLCSGD-KIEGAFPILNSSRKP-CKAGAVLSLSI 185 (546)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~---~d~IG~~~i~l~~l~~g~-~~~~W~~L~~~~g~~-~k~~g~I~l~l 185 (546)
+.. .+.|.|+|||++.++ +++||++.++++++.... ....|++|....... ....|++.+++
T Consensus 56 ~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 56 VGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 975 689999999999876 369999999999987543 346799996543211 11235666554
No 61
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.71 E-value=2.8e-17 Score=146.71 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=94.4
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeee-CCCCCeEeeEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVIS-NSESPVWMQHFN 120 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~-~t~nP~WNE~F~ 120 (546)
+|+|+|++|++|++.+. .+++||||+|.+++....+|+++. ++.||+|||+|.
T Consensus 1 ~L~V~V~sA~~L~~~~~--------------------------~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~ 54 (125)
T cd04051 1 TLEITIISAEDLKNVNL--------------------------FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLR 54 (125)
T ss_pred CEEEEEEEcccCCCCCc--------------------------ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEE
Confidence 58999999999998775 356899999999883344999986 489999999999
Q ss_pred EeecCC-----CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCe-----eeeccccccCCCCcccCCceEEE
Q 009008 121 VPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-----IEGAFPILNSSRKPCKAGAVLSL 183 (546)
Q Consensus 121 ~~v~~~-----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~-----~~~W~~L~~~~g~~~k~~g~I~l 183 (546)
|.+.+. ...|.|+|+|++.++ +++||++.|+|.++..+.. ...||+|....|+ ..|.+++
T Consensus 55 f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~---~~G~~~~ 125 (125)
T cd04051 55 FPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK---PQGVLNF 125 (125)
T ss_pred EEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC---cCeEEeC
Confidence 998776 588999999999866 7899999999999987554 3689999988776 4477764
No 62
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.71 E-value=3.3e-17 Score=147.19 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=86.8
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
.+.|.|+|++|+||+.+|.. .|.+||||+|.+.. ....||++++++.||+|
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~-------------------------~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvf 68 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEK-------------------------KKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVF 68 (128)
T ss_pred CCEEEEEEEecCCCCccCCC-------------------------CCCCCeEEEEEEEeCCcccceeecccccCCCCCcc
Confidence 47899999999999987741 36799999999942 22449999999999999
Q ss_pred eeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccC---CCeeeeccccc
Q 009008 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPIL 168 (546)
Q Consensus 116 NE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~---g~~~~~W~~L~ 168 (546)
||+|.|++... ...|.|.|||.+.++ +++||++.|+|+++.. +.....||+|.
T Consensus 69 NE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 69 NETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999998653 368999999999876 7899999999999864 34678999983
No 63
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=6.9e-17 Score=143.96 Aligned_cols=102 Identities=25% Similarity=0.329 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
.+.|.|+|++|++|+.++. .+.+||||+|.+.+ ....||++++++.||+|
T Consensus 15 ~~~L~V~vi~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 68 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDD--------------------------GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEW 68 (125)
T ss_pred CCEEEEEEEEecCCCCcCC--------------------------CCCCCCEEEEEEccCCCccccccccccCCCCCCcc
Confidence 4789999999999998775 45689999999964 24559999999999999
Q ss_pred eeEEEEeecC----CCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 116 MQHFNVPVAH----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 116 NE~F~~~v~~----~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
||+|.|++.. ....|.|+|||++.++ +++||++.++|++.. ......||+|.
T Consensus 69 ne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 69 NQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred ccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 9999998644 2468999999999877 789999999999843 33346899983
No 64
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=1.3e-16 Score=143.15 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=92.8
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|+|+|++|++|+.+|. .|.+||||+|.+++... +|++++++.||+|||+|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~--------------------------~g~~DPyv~v~~~~~~~-kT~~v~~t~~P~Wne~f~f 54 (127)
T cd04027 2 KISITVVCAQGLIAKDK--------------------------TGTSDPYVTVQVGKTKK-RTKTIPQNLNPVWNEKFHF 54 (127)
T ss_pred eEEEEEEECcCCcCCCC--------------------------CCCcCcEEEEEECCEee-ecceecCCCCCccceEEEE
Confidence 58999999999998875 45689999999987655 9999999999999999999
Q ss_pred eecCCCceEEEEEEecCCc------------CCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEE
Q 009008 122 PVAHSAAEVHFVVKDNDFV------------GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLS 184 (546)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~------------~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~ 184 (546)
.+......|.|+|||+|.. .+++||++.+++.++.. ..+.|++|....++. +..|+|.++
T Consensus 55 ~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~-~~~G~i~~~ 126 (127)
T cd04027 55 ECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKS-AVSGAIRLH 126 (127)
T ss_pred EecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCC-cEeEEEEEE
Confidence 9876667899999998852 37899999999998753 356899998654432 235777765
No 65
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=9.2e-17 Score=140.63 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEeecCC-CceEEEEEEecCCcCCeeeEeEEEeceeccC-CCeee
Q 009008 85 KITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCS-GDKIE 162 (546)
Q Consensus 85 ~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~-g~~~~ 162 (546)
.|.+||||+|.++++..++|++++++.||+|||+|.|.+.+. .+.|.|.|+|++.+++++||.+.++|+++.. +...+
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~ 89 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQ 89 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccc
Confidence 678999999999988777999999999999999999999875 4779999999998888999999999999864 44568
Q ss_pred eccccccCCCCcccCCceEEEEEEeecc
Q 009008 163 GAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (546)
Q Consensus 163 ~W~~L~~~~g~~~k~~g~I~l~l~f~P~ 190 (546)
.|++|.+ . ..|+|+++++|+|+
T Consensus 90 ~w~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 90 QWFPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred eeEECCC---C---CCCEEEEEEEEecC
Confidence 9999964 1 34899999999985
No 66
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=1.1e-16 Score=139.97 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=84.7
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
-.|+|+|++|++|+ ++++||||+|.+++++. +|++++++.||+|||+|.
T Consensus 4 ~~l~V~v~~a~~L~------------------------------~~~~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~ 52 (111)
T cd04011 4 FQVRVRVIEARQLV------------------------------GGNIDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFF 52 (111)
T ss_pred EEEEEEEEEcccCC------------------------------CCCCCCEEEEEECCEee-eeeEEeccCCCccccEEE
Confidence 46899999999997 13489999999998877 999999999999999999
Q ss_pred EeecCC-----CceEEEEEEecCCcC-CeeeEeEEEeceeccCC---Ceeeecccccc
Q 009008 121 VPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG---DKIEGAFPILN 169 (546)
Q Consensus 121 ~~v~~~-----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g---~~~~~W~~L~~ 169 (546)
|.+..+ ...|.|+|+|++.++ +++||++.++|+++..+ .....|++|.+
T Consensus 53 f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 53 FNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 997543 357999999999887 78999999999999765 44688999965
No 67
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=1e-16 Score=142.94 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=90.2
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeC-CCCCeEeeEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHF 119 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~-t~nP~WNE~F 119 (546)
|.|+|+|++|++|++++. .+++||||+|.+++... +|+++++ +.||+|||+|
T Consensus 1 g~L~V~V~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f 53 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF--------------------------LGKIDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKF 53 (124)
T ss_pred CeEEEEEEecCCCCCCCC--------------------------CCCcCceEEEEECCEee-eeeEcCCCCCCCcccceE
Confidence 789999999999998775 34589999999988776 9998875 8999999999
Q ss_pred EEeecCC----CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeecccccc
Q 009008 120 NVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (546)
Q Consensus 120 ~~~v~~~----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~ 169 (546)
.|.+.+. ...|.|.|+|.+.++ +++||++.+++.++..++..+.|++|..
T Consensus 54 ~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 54 KFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred EEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 9999876 478999999999876 7899999999999998888899999964
No 68
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.69 E-value=8.9e-17 Score=143.75 Aligned_cols=103 Identities=22% Similarity=0.342 Sum_probs=88.1
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
.+.|.|+|++|++|+.++. .+.+||||+|.+.. ....||++++++.||+|
T Consensus 15 ~~~L~V~vi~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~w 68 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDS--------------------------SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVF 68 (127)
T ss_pred CCEEEEEEEEEECCCCccC--------------------------CCCCCceEEEEEEcCCCCCceEecccccCCCCCEE
Confidence 3789999999999998875 45689999999953 34459999999999999
Q ss_pred eeEEEEeecCC---CceEEEEEEecCCc--C-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 116 MQHFNVPVAHS---AAEVHFVVKDNDFV--G-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 116 NE~F~~~v~~~---~~~l~~~V~D~d~~--~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
||+|.|.+... ...|.|+|+|++.+ + +++||++.|+|.++..+...++||+|.
T Consensus 69 ne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 69 DETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 99999998543 36899999999875 3 789999999999998888889999983
No 69
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=1.7e-16 Score=139.47 Aligned_cols=104 Identities=30% Similarity=0.435 Sum_probs=91.6
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|+|+|++|++|+..+. .+.+||||+|.+++..+++|+++.++.||+|||+|.|.
T Consensus 1 l~v~vi~a~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~ 54 (115)
T cd04040 1 LTVDVISAENLPSADR--------------------------NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVP 54 (115)
T ss_pred CEEEEEeeeCCCCCCC--------------------------CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEE
Confidence 6899999999998764 45689999999987777799999999999999999999
Q ss_pred ecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCC
Q 009008 123 VAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSR 172 (546)
Q Consensus 123 v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g 172 (546)
+... .+.+.|+|||++..+ +++||++.+++.++..+...+.|++|....+
T Consensus 55 ~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 55 VPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred eccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 8764 578999999999876 7899999999999998888899999976544
No 70
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=3.2e-16 Score=139.98 Aligned_cols=112 Identities=24% Similarity=0.294 Sum_probs=93.0
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCCCeEeeEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~rT~vi~~t~nP~WNE~F 119 (546)
.|.|+|++|++|+.++. .+.+||||+|.+.+ ...+||++++++.||+|||+|
T Consensus 2 ~~~V~v~~a~~L~~~~~--------------------------~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f 55 (126)
T cd04043 2 LFTIRIVRAENLKADSS--------------------------NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEF 55 (126)
T ss_pred EEEEEEEEeECCCCCCC--------------------------CCCCCceEEEEECCCCeeeecccEecCCCCCcccceE
Confidence 48999999999998775 45689999999864 456699999999999999999
Q ss_pred EEeecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccC---CCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 120 ~~~v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~---g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
.|.+.+. ...|.|+|+|++..+ +++||++.++|+++.. +...+.|++|.. . |++++.+.+
T Consensus 56 ~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~-------g~i~l~~~~ 120 (126)
T cd04043 56 ELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-Q-------GRLLLRVSM 120 (126)
T ss_pred EEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-C-------CeEEEEEEE
Confidence 9999874 578999999999886 7899999999987643 446678999952 2 577777776
No 71
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.69 E-value=9.8e-17 Score=142.56 Aligned_cols=104 Identities=26% Similarity=0.435 Sum_probs=87.9
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~--~~~rT~vi~~t~nP~ 114 (546)
..+.|.|+|++|++|+.++.. .+.+||||+|.+.. . ..++|++++++.||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~-------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEK-------------------------KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCC-------------------------CCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence 358899999999999987721 45689999999842 1 345999999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeecccc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L 167 (546)
|||+|.|.+... ...|.|+|+|++.++ +++||++.++|+++..+...+.||+|
T Consensus 67 wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999997653 468999999999877 78999999999999877778999986
No 72
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=5.7e-17 Score=147.20 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=92.3
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~--~~~rT~vi~~t~nP~ 114 (546)
..|.|.|+|++|+||+.+|... .+.+||||+|.+.. + ...||+++++++||+
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~------------------------~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPv 68 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKL------------------------LLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPV 68 (138)
T ss_pred CCCeEEEEEEEecCCCccccCC------------------------CCCCCeEEEEEEEcCCcccceeccceeeCCCCCc
Confidence 5688999999999999887410 23489999999953 2 234899999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|||+|.|.+++. ...|.|+|+|+|.++ +++||++.+++.. .|...++|.+++...++++
T Consensus 69 fNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 69 WNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred cccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 999999998753 467999999999988 8899999999974 6778899999988777654
No 73
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.69 E-value=1.7e-16 Score=142.58 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=85.4
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeEee
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~~~rT~vi~~t~nP~WNE 117 (546)
.+.|.|+|++|++|+.++.. ++.+||||+|.+. +....||++++++.||+|||
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~-------------------------~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE 69 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQ-------------------------SGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDE 69 (128)
T ss_pred CCEEEEEEEEeECCCCCCCC-------------------------CCCcCCEEEEEEeCCcCceeeccEEcCCCCCceee
Confidence 46899999999999987751 3678999999995 23345999999999999999
Q ss_pred EEEEe-ecC---CCceEEEEEEecCCcC-CeeeEeEEEeceeccCC--Ceeeeccccc
Q 009008 118 HFNVP-VAH---SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG--DKIEGAFPIL 168 (546)
Q Consensus 118 ~F~~~-v~~---~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g--~~~~~W~~L~ 168 (546)
+|.|. +.. ....|.|+|+|++.++ +++||++.|+|+++..+ .....|++|.
T Consensus 70 ~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 70 TFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99994 432 1247999999999887 88999999999998643 6788898874
No 74
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.69 E-value=1.3e-16 Score=142.40 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeEee
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~~~rT~vi~~t~nP~WNE 117 (546)
.+.|.|+|++|++|+.+|. .+++||||+|.+. +....+|++++++.||+|||
T Consensus 15 ~~~L~v~v~~a~~L~~~d~--------------------------~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne 68 (125)
T cd08386 15 ESTLTLKILKAVELPAKDF--------------------------SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNE 68 (125)
T ss_pred CCEEEEEEEEecCCCCccC--------------------------CCCCCceEEEEECCCCCcceeeeeecCCCCCccce
Confidence 4689999999999998775 4568999999993 33445999999999999999
Q ss_pred EEEEeecCC----CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 118 HFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 118 ~F~~~v~~~----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
+|.|.+... ...|.|+|+|++.++ +++||++.|+++++..+...+.|++|.
T Consensus 69 ~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 69 TFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999974321 357999999999887 789999999999999888889999984
No 75
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=9.2e-17 Score=145.04 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=91.5
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~ 114 (546)
..|.|.|+|++|++|+.+|. .|.+||||+|.+.. ....+|++++++.||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~--------------------------~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~ 64 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDA--------------------------NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPE 64 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCC--------------------------CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCC
Confidence 45899999999999998875 45699999999953 2345999999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|||+|.|.+... ...|.|+|+|++..+ +++||++.|++.. .++..+.|++++...++++
T Consensus 65 wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 65 FNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred cccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 999999998653 367999999999876 7899999999985 4667789999987766543
No 76
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.69 E-value=6.9e-17 Score=146.53 Aligned_cols=109 Identities=26% Similarity=0.289 Sum_probs=90.6
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAV--IGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~--~~rT~vi~~t~nP~ 114 (546)
..+.|.|+|++|+||+.+|. .|.+||||+|.+. +.+ ..||+++++++||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~--------------------------~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~ 66 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNG--------------------------KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPI 66 (136)
T ss_pred CCCEEEEEEEEeeCCCCccC--------------------------CCCCCeEEEEEEEeCCccccccCCccccCCCCCe
Confidence 45789999999999998774 5679999999993 222 33899999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|||+|.|.++.. ...|.|+|+|++.++ +++||++.|+.. ..|...++|..++...++++
T Consensus 67 ~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 67 FNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred eceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence 999999998753 467999999999877 889999999876 45777899999988766643
No 77
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.68 E-value=1.5e-16 Score=144.26 Aligned_cols=109 Identities=26% Similarity=0.377 Sum_probs=90.9
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAV--IGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~--~~rT~vi~~t~nP~ 114 (546)
..+.|.|+|++|++|+.+|. .|++||||+|.+. ++. ..||++++++.||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~--------------------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~ 66 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDV--------------------------SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc--------------------------CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc
Confidence 35789999999999998875 4669999999994 332 34899999999999
Q ss_pred EeeEEEEeecC---CCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 115 WMQHFNVPVAH---SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 115 WNE~F~~~v~~---~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|||+|.|.+.. ....|.|+|+|++.++ +++||++.|++.. .+...+.|++|.+..|+++
T Consensus 67 w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred cCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 99999999864 2357899999999887 7899999999988 4667789999987767653
No 78
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.67 E-value=8.8e-16 Score=135.12 Aligned_cols=113 Identities=27% Similarity=0.409 Sum_probs=89.0
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|.|+|++|++|+.+ +++||||+|.+++.++++|+++++ .||+|||+|.|
T Consensus 1 ~L~v~vi~a~~l~~~-----------------------------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f 50 (117)
T cd08383 1 SLRLRILEAKNLPSK-----------------------------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVF 50 (117)
T ss_pred CeEEEEEEecCCCcC-----------------------------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEE
Confidence 388999999999854 248999999999887779999999 99999999999
Q ss_pred eecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 122 PVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 122 ~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
.+.+. ...|.|.++|.+..+ +..+|. +++..+..+...+.|++|...++.. +..|+|++.++|
T Consensus 51 ~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 51 DDPPPDVTFFTLSFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred ecCCccccEEEEEEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 98763 356788888877654 445555 5555556677889999997655432 346899999887
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.67 E-value=2.1e-16 Score=145.82 Aligned_cols=97 Identities=31% Similarity=0.445 Sum_probs=84.7
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE---------------------
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--------------------- 99 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~--------------------- 99 (546)
+.|.|+|++|++|+++|. .|.+||||+|.+...
T Consensus 28 ~~L~V~vi~a~~L~~~d~--------------------------~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDV--------------------------NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVL 81 (153)
T ss_pred EEEEEEEEeccCCcccCC--------------------------CCCCCceEEEEEcccccccccccccccccccccccc
Confidence 889999999999998886 466999999999532
Q ss_pred -------EEeeeeeeeCCCCCeEeeEEEEeecCC-CceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeecccc
Q 009008 100 -------VIGRTFVISNSESPVWMQHFNVPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPI 167 (546)
Q Consensus 100 -------~~~rT~vi~~t~nP~WNE~F~~~v~~~-~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L 167 (546)
.+.+|+++++++||+|||+|.|.+.+. ...|.|+|+|++ +++||++.++++++. +...+.||+|
T Consensus 82 ~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 82 KDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred cccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 245899999999999999999999764 478999999988 889999999999998 4457999986
No 80
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.67 E-value=7.3e-16 Score=142.18 Aligned_cols=102 Identities=19% Similarity=0.352 Sum_probs=83.9
Q ss_pred CCCCCcEEEEEE----CCEEEeeeeeeeCCCCCeEeeEEEEeecCC---------CceEEEEEEecCCc--CCeeeEeEE
Q 009008 85 KITSDPYVTVSI----CGAVIGRTFVISNSESPVWMQHFNVPVAHS---------AAEVHFVVKDNDFV--GSQIMGAVG 149 (546)
Q Consensus 85 ~g~~DPYv~v~l----~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~---------~~~l~~~V~D~d~~--~~d~IG~~~ 149 (546)
.+.+||||++.+ .+....||+++++|+||+|||+|.|.+... ...|.|+|||++.+ .+++||++.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 567899999998 344455999999999999999999998654 24699999999876 389999999
Q ss_pred EeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeec
Q 009008 150 IPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (546)
Q Consensus 150 i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P 189 (546)
++|+.+........|++|++. .++ .+|.++++++-+.
T Consensus 102 i~L~~l~~~~~~~~~~~L~~~-~k~--~Gg~l~v~ir~r~ 138 (155)
T cd08690 102 VKLEPLETKCEIHESVDLMDG-RKA--TGGKLEVKVRLRE 138 (155)
T ss_pred EEcccccccCcceEEEEhhhC-CCC--cCCEEEEEEEecC
Confidence 999999877777889999753 333 5689999998753
No 81
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.67 E-value=3.5e-16 Score=140.05 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=82.5
Q ss_pred ccCCCCCCCC-ceEEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEe
Q 009008 24 AVPFETHQGS-LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIG 102 (546)
Q Consensus 24 ~~~~~~~~~~-~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~ 102 (546)
.+.|+...++ .+-+ |.|+|+|++|++|+. +. .+.+||||+|.+++++.
T Consensus 13 ~~~~~~~~~~~~~~~---~~L~V~V~~A~~L~~-d~--------------------------~g~~DPYVkV~~~~~~~- 61 (127)
T cd04032 13 SPNVNSNCCPTRRGL---ATLTVTVLRATGLWG-DY--------------------------FTSTDGYVKVFFGGQEK- 61 (127)
T ss_pred CCCcCCCcCcCcCCc---EEEEEEEEECCCCCc-Cc--------------------------CCCCCeEEEEEECCccc-
Confidence 3445555555 3334 899999999999973 43 35589999999988855
Q ss_pred eeeeeeCCCCCeEeeEEEEeecC--CCceEEEEEEecCCcC-CeeeEeEEEeceecc
Q 009008 103 RTFVISNSESPVWMQHFNVPVAH--SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC 156 (546)
Q Consensus 103 rT~vi~~t~nP~WNE~F~~~v~~--~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~ 156 (546)
||++++++.||+|||+|.|.... ..+.|.|+|||++.++ +++||++.++|+...
T Consensus 62 kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 62 RTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred cCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 99999999999999999997432 3689999999999986 899999999998554
No 82
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=3.7e-16 Score=138.91 Aligned_cols=104 Identities=20% Similarity=0.191 Sum_probs=88.5
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeEee
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~~~rT~vi~~t~nP~WNE 117 (546)
.+.|.|+|++|++|+.++.. .+.+||||+|.+. +...++|++++++.||+|||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~-------------------------~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne 67 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKD-------------------------VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDE 67 (123)
T ss_pred CCEEEEEEEEecCCCCccCC-------------------------CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccce
Confidence 57899999999999987621 3568999999983 34456999999999999999
Q ss_pred EEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 118 HFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 118 ~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
+|.|.+... ...|.|+|||++..+ +++||++.++|+++........|++|.
T Consensus 68 ~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 68 TFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999997653 357999999999876 789999999999999877788999984
No 83
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=4.3e-16 Score=139.22 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=86.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeeeCCCCCeEee
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~~~rT~vi~~t~nP~WNE 117 (546)
.+.|.|+|++|+||+.++. +|.+||||++.+. +....||+++++ .||+|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~--------------------------~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE 67 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDR--------------------------GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNE 67 (124)
T ss_pred CCEEEEEEEEecCCCchhc--------------------------CCCCCcEEEEEEccCCcceeecccccC-CCCcccC
Confidence 3789999999999998874 4668999998873 234449999887 9999999
Q ss_pred EEEEe-ecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 118 HFNVP-VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 118 ~F~~~-v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
+|.|+ +... ...|.|+|+|++.++ +++||++.|+|+++..+.....|++|.
T Consensus 68 ~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 68 TFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99998 5532 467999999999887 889999999999998888889999984
No 84
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.66 E-value=3.6e-16 Score=146.14 Aligned_cols=104 Identities=28% Similarity=0.368 Sum_probs=85.0
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~----~~~~~rT~vi~~t~nP~ 114 (546)
..|.|.|+|++|++|+.++. .+.+||||+|.+. +....||++++++.||+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~--------------------------~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~ 78 (162)
T cd04020 25 STGELHVWVKEAKNLPALKS--------------------------GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV 78 (162)
T ss_pred CCceEEEEEEeeeCCCCCCC--------------------------CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence 45899999999999998775 4669999999983 23455999999999999
Q ss_pred EeeEEEEeecCC----CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 115 WMQHFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 115 WNE~F~~~v~~~----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++......+.|++|.
T Consensus 79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 999999985322 257999999999887 899999999999987544456666653
No 85
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=1.6e-16 Score=144.16 Aligned_cols=110 Identities=27% Similarity=0.420 Sum_probs=91.2
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeeeCCCCC
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESP 113 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~--~~~rT~vi~~t~nP 113 (546)
...|.|.|+|++|++|+.+|. .|.+||||+|.+. ++ ...+|++++++.||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP 65 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDV--------------------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNP 65 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccC--------------------------CCCCCCeEEEEEEECCcccceeeccceeCCCCC
Confidence 456999999999999998775 4669999999994 22 34489999999999
Q ss_pred eEeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 114 VWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 114 ~WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
+|||+|.|++... ...|.|+|+|++.++ +++||++.|++.. .+...++|++|+...++++
T Consensus 66 ~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 66 YYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred cccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 9999999998643 247999999999887 7899999999975 4667889999987766543
No 86
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=2.8e-16 Score=142.52 Aligned_cols=109 Identities=22% Similarity=0.351 Sum_probs=90.9
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~--~~~~rT~vi~~t~nP~ 114 (546)
..|+|.|+|++|++|+.++. .|++||||+|.+. + ....||++++++.||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~--------------------------~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (136)
T cd08405 13 TANRITVNIIKARNLKAMDI--------------------------NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc--------------------------CCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence 34899999999999998775 4569999999983 2 2244899999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|||+|.|.+... ...|.|+|+|++.++ +++||++.|++.+. +...+.|++|+...++++
T Consensus 67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 67 FNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 999999987532 357999999999887 78999999999875 667789999998777654
No 87
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=4.9e-16 Score=139.61 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=89.4
Q ss_pred ceEEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeeeC
Q 009008 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISN 109 (546)
Q Consensus 34 ~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~--~~~~rT~vi~~ 109 (546)
+......|.|.|+|++|+||+.++. .+.+||||+|.+- + ....||+++++
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~--------------------------~~~~dpYVKV~L~~~~k~~~KkKT~v~k~ 60 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSST--------------------------PLTLSFFVKVGMFSTGGLLYKKKTRLVKS 60 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccC--------------------------CCCCCcEEEEEEEECCCcceeecCccEEC
Confidence 3344466899999999999997632 3457999999993 2 23448999999
Q ss_pred CC-CCeEeeEEEEeecCCC--ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 110 SE-SPVWMQHFNVPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 110 t~-nP~WNE~F~~~v~~~~--~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|. ||+|||+|.|+++... ..+.++|+|++..+ +++||++.++.++. .+...++|.+++...++++
T Consensus 61 t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 61 SNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred CCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 85 6999999999987643 45677888888776 89999999999763 3556789999987766654
No 88
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=8.5e-16 Score=140.84 Aligned_cols=92 Identities=30% Similarity=0.498 Sum_probs=82.9
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|.|.|+|++|++|+..+. +++||||+|.++++.. +|++++++.||+|||+|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~---------------------------~~sDPYV~v~~g~~~~-kT~vvk~t~nP~WnE~f~ 53 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF---------------------------TSSDPYVVLTLGNQKV-KTRVIKKNLNPVWNEELT 53 (145)
T ss_pred eEEEEEEEeeECCCCCCC---------------------------CCcCcEEEEEECCEEE-EeeeEcCCCCCeecccEE
Confidence 889999999999987664 3489999999998776 999999999999999999
Q ss_pred EeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCe
Q 009008 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK 160 (546)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~ 160 (546)
|.+.++...|.|+|||++.++ +++||++.+++.++.....
T Consensus 54 f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 54 LSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 999888889999999999887 7899999999999886543
No 89
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.65 E-value=3e-16 Score=141.96 Aligned_cols=109 Identities=29% Similarity=0.412 Sum_probs=90.3
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~--~~~rT~vi~~t~nP~ 114 (546)
.+|.|+|+|++|++|+.+|. .|.+||||+|.+. ++ ...+|++++++.||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~--------------------------~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~ 65 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDI--------------------------TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT 65 (134)
T ss_pred CCCEEEEEEEEeeCCCcccc--------------------------CCCCCceEEEEEEeCCcccceecCCcccCCCCCc
Confidence 46899999999999998876 4568999999994 22 345899999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|||+|.|.+... ...|.|+|+|++.++ +++||++.|++. ..+...+.|++++...++++
T Consensus 66 wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 66 YNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred ccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 999999987643 246899999999988 889999999987 44666789999988777653
No 90
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.64 E-value=1.4e-15 Score=137.00 Aligned_cols=106 Identities=28% Similarity=0.425 Sum_probs=90.5
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCC
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESP 113 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP 113 (546)
+..+.|.|+|++|++|+..+. .+.+||||+|.+.+ ...++|++++++.||
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~--------------------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P 63 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDP--------------------------NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNP 63 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCC--------------------------CCCCCCcEEEEEEcCCCCCceecceeecCCCCC
Confidence 456899999999999997764 34689999999963 355699999999999
Q ss_pred eEeeEEEEeecCC--CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccC
Q 009008 114 VWMQHFNVPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (546)
Q Consensus 114 ~WNE~F~~~v~~~--~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~ 170 (546)
.|||+|.|.+... ...|.|+|||++.++ +++||++.++++++... ..+.||+|.+.
T Consensus 64 ~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 64 VWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 9999999998654 468999999999876 78999999999999854 67899999865
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.64 E-value=6.4e-16 Score=139.23 Aligned_cols=108 Identities=32% Similarity=0.453 Sum_probs=91.7
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA----VIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~----~~~rT~vi~~t~nP~W 115 (546)
.+.|.|+|++|++|+..+. .+.+||||+|.+.+. ...+|+++.++.||+|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w 66 (134)
T cd00276 13 AERLTVVVLKARNLPPSDG--------------------------KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66 (134)
T ss_pred CCEEEEEEEEeeCCCCccC--------------------------CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence 3789999999999998764 456899999999542 3559999999999999
Q ss_pred eeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 116 NE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
||+|.|.+... ...|.|+|+|.+..+ +++||.+.+++++ .+...+.|++|++..++++
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred eeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 99999998764 378999999999866 7899999999998 5778899999998766643
No 92
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.63 E-value=1e-15 Score=139.10 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeeeCCCCCeEeeEE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---AVIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~---~~~~rT~vi~~t~nP~WNE~F 119 (546)
|.|+|++|++|+.+ . .+.+||||+|.++. ....+|+++.++.||+|||+|
T Consensus 1 L~V~Vi~A~~L~~~-~--------------------------~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f 53 (137)
T cd08675 1 LSVRVLECRDLALK-S--------------------------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAF 53 (137)
T ss_pred CEEEEEEccCCCcc-c--------------------------CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEE
Confidence 67999999999876 3 45689999999983 344599999999999999999
Q ss_pred EEeecCC----------------CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccC
Q 009008 120 NVPVAHS----------------AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (546)
Q Consensus 120 ~~~v~~~----------------~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~ 170 (546)
.|.+... ...|.|+|||++..+ +++||++.|+++++........|++|...
T Consensus 54 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 54 YFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 9997654 357999999999885 88999999999999877778999999754
No 93
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.63 E-value=2.8e-15 Score=141.36 Aligned_cols=143 Identities=21% Similarity=0.260 Sum_probs=108.8
Q ss_pred hHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcH
Q 009008 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDE 330 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~ 330 (546)
+++.++++|.+|+++|+|+.|.+++.. ......|.++|.+|+++||+|+||+++.... .. ....
T Consensus 22 ~~~~i~~~I~~A~~~I~i~~~~~~~~~-----~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~-~~----------~~~~ 85 (176)
T cd00138 22 DLDALLEAISNAKKSIYIASFYLSPLI-----TEYGPVILDALLAAARRGVKVRILVDEWSNT-DL----------KISS 85 (176)
T ss_pred HHHHHHHHHHhhheEEEEEEeEecccc-----cccchHHHHHHHHHHHCCCEEEEEEcccccC-Cc----------hHHH
Confidence 799999999999999999999655432 1235899999999999999999998444321 10 0112
Q ss_pred HHHHhhcCC---CcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCc
Q 009008 331 ETRRFFKHS---SVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPL 407 (546)
Q Consensus 331 ~~~~~l~~~---gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~ 407 (546)
.....|... ++++...+.... ...++|+|++|||+ +++++||.|+...++.
T Consensus 86 ~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~--------~~~~vGS~N~~~~~~~------ 139 (176)
T cd00138 86 AYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDD--------ETAYIGSANLDGRSLT------ 139 (176)
T ss_pred HHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcC--------CEEEEECCcCChhhhh------
Confidence 344455544 788776543210 23579999999999 7999999999986652
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccCh--HHHHHHHHHHHHHhhc
Q 009008 408 FKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP--AAYDILTNFEERWLKA 462 (546)
Q Consensus 408 ~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gp--aa~dl~~~F~~rW~~~ 462 (546)
.++|..+.+++| +|.++.+.|.+.|+..
T Consensus 140 ---------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 ---------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred ---------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 457889999999 7999999999999974
No 94
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=7e-16 Score=139.86 Aligned_cols=110 Identities=22% Similarity=0.329 Sum_probs=87.6
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC-C---EEEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC-G---AVIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~-~---~~~~rT~vi~~t~nP~ 114 (546)
..|.|.|+|++|++|+.+|. .|++||||+|.+. + ....+|++++++.||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~--------------------------~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~ 65 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDM--------------------------SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF 65 (135)
T ss_pred CCCeEEEEEEEecCCCcccC--------------------------CCCCCeEEEEEEEcCCcccceEcCccccCCCCCc
Confidence 45899999999999998876 4569999999983 2 1234899999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
|||+|.|.+... ...|.|+|+|++..+ +++||++.|...... +...++|+.|+...++++
T Consensus 66 wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 66 YNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAV 129 (135)
T ss_pred cceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEe
Confidence 999999998542 246999999999876 889999987653322 334689999998877654
No 95
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=7.3e-16 Score=140.27 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=89.3
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---E--EEeeeeeeeCCCCC
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---A--VIGRTFVISNSESP 113 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~---~--~~~rT~vi~~t~nP 113 (546)
..+.|.|+|++|+||+.++. +|.+||||+|.+.. . ...||++++++.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~--------------------------~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nP 66 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAM--------------------------NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDP 66 (138)
T ss_pred CCCeEEEEEEEecCCCcccc--------------------------CCCCCeeEEEEEEeCCCcceeeccceeecCCCCC
Confidence 35899999999999998775 56799999999932 2 23499999999999
Q ss_pred eEeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 114 VWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 114 ~WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
+|||+|.|+++.. ...|.|+|+|.+.++ +++||++.|++.... ....++|+.++...++++
T Consensus 67 vfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 67 EFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQV 131 (138)
T ss_pred cEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCEE
Confidence 9999999998753 368999999999876 889999999987432 234679999987766653
No 96
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.61 E-value=5.8e-15 Score=129.34 Aligned_cols=79 Identities=20% Similarity=0.414 Sum_probs=67.0
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeEeeE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~WNE~ 118 (546)
|.|+|.+|++|+ +.+||||++.++. ...+||+++++|+||+|||+
T Consensus 1 L~V~V~~A~~L~-------------------------------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~ 49 (118)
T cd08686 1 LNVIVHSAQGFK-------------------------------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEE 49 (118)
T ss_pred CEEEEEeCCCCC-------------------------------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceE
Confidence 689999999995 2379999999963 35679999999999999999
Q ss_pred EEEeecCCCceEEEEEEec-------CCcC-CeeeEeEEEece
Q 009008 119 FNVPVAHSAAEVHFVVKDN-------DFVG-SQIMGAVGIPVE 153 (546)
Q Consensus 119 F~~~v~~~~~~l~~~V~D~-------d~~~-~d~IG~~~i~l~ 153 (546)
|.|++. ....|.|+|||+ |..+ +++||.+.|.|+
T Consensus 50 F~i~l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 50 FEIELE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEeC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 999997 467999999997 3445 789998888874
No 97
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.61 E-value=8.4e-15 Score=130.86 Aligned_cols=118 Identities=30% Similarity=0.450 Sum_probs=93.9
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeeeCCC-CCeE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSE-SPVW 115 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~-----~~~~rT~vi~~t~-nP~W 115 (546)
.|+|+|++|++|+.++.. ..+.+||||+|++.+ ....+|+++.++. ||+|
T Consensus 3 ~l~v~vi~a~~L~~~~~~------------------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w 58 (128)
T cd00275 3 TLTIKIISGQQLPKPKGD------------------------KGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVW 58 (128)
T ss_pred EEEEEEEeeecCCCCCCC------------------------CCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCcc
Confidence 589999999999977620 034589999999942 2334999988765 9999
Q ss_pred eeEEEEeecCCC-ceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 116 MQHFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 116 NE~F~~~v~~~~-~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
||+|.|.+.... ..|.|+|+|++..++++||++.++++++..|. .|++|.+..|++ ...|.+.+.+++
T Consensus 59 ~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 59 NETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 999999987554 67899999998777889999999999997653 689998887764 345788887765
No 98
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=8.3e-15 Score=131.07 Aligned_cols=116 Identities=21% Similarity=0.373 Sum_probs=89.4
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
.|.|+|.+|+ |...+. .+.+||||+|.++++..++|++++++.||+|||+|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~--------------------------~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~ 55 (125)
T cd04021 3 QLQITVESAK-LKSNSK--------------------------SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTV 55 (125)
T ss_pred eEEEEEEeeE-CCCCCc--------------------------CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEE
Confidence 5899999998 544332 3458999999999875669999999999999999999
Q ss_pred eecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCe-----eeeccccccCCCCcccCCceEEEEE
Q 009008 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-----IEGAFPILNSSRKPCKAGAVLSLSI 185 (546)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~-----~~~W~~L~~~~g~~~k~~g~I~l~l 185 (546)
.+. ..+.|.|+|||++..+ +++||++.++|+++..+.. ...|++|........+..|.+++.+
T Consensus 56 ~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 56 LVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 986 4578999999999886 7899999999999885322 3358888644310112346776654
No 99
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=4.7e-16 Score=158.57 Aligned_cols=106 Identities=27% Similarity=0.414 Sum_probs=92.1
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~----~~~~~rT~vi~~t~nP~ 114 (546)
-...|.|+|.+|+||-+||. +|.|||||++++- .....+|++++.++||+
T Consensus 178 ~~~~l~v~i~ea~NLiPMDp--------------------------NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~ 231 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDP--------------------------NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPV 231 (683)
T ss_pred cCceEEEEehhhccccccCC--------------------------CCCCCcceeEEeccCCcchhhhhhhhhhhhcCcc
Confidence 44669999999999999997 7889999999993 24445999999999999
Q ss_pred EeeEEEEeecCC--CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCC
Q 009008 115 WMQHFNVPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (546)
Q Consensus 115 WNE~F~~~v~~~--~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~ 171 (546)
|||+|.|.+... ...|.++|||||..+ +|++|...+.+++|. ....++||.|++..
T Consensus 232 wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 232 WNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQE 290 (683)
T ss_pred ccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhh
Confidence 999999997644 478999999999887 899999999999998 55678999998753
No 100
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.60 E-value=3.2e-15 Score=135.16 Aligned_cols=91 Identities=26% Similarity=0.406 Sum_probs=78.9
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeeeCCCCCe
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------AVIGRTFVISNSESPV 114 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~------~~~~rT~vi~~t~nP~ 114 (546)
+.|.|+|++|++|+.++. .+++||||+|.+.+ ....||++++++.||+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~--------------------------~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~ 69 (133)
T cd04009 16 QSLRVEILNARNLLPLDS--------------------------NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPL 69 (133)
T ss_pred CEEEEEEEEeeCCCCcCC--------------------------CCCCCCEEEEEEECCCcCccccccccccCcCCCCCc
Confidence 679999999999998775 45699999999953 3355999999999999
Q ss_pred EeeEEEEeecCC-----CceEEEEEEecCCcC-CeeeEeEEEeceeccC
Q 009008 115 WMQHFNVPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS 157 (546)
Q Consensus 115 WNE~F~~~v~~~-----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~ 157 (546)
|||+|.|++... ...|.|+|||++.++ +++||++.++|+++..
T Consensus 70 wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 70 FDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999998652 468999999999888 8999999999999874
No 101
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=1.7e-15 Score=137.65 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~--~~~rT~vi~~t~nP~W 115 (546)
.+.|.|+|++|+||+.++ . +.+||||+|.+.. . ...||++++++.||+|
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~--------------------------~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~f 66 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-H--------------------------AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSF 66 (137)
T ss_pred CCeEEEEEEEecCCCccc-C--------------------------CCCCeEEEEEEEECCEEeeeeecccEeCCCCCcc
Confidence 478999999999999776 2 3489999999853 2 2338999999999999
Q ss_pred eeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCc
Q 009008 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (546)
Q Consensus 116 NE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~ 174 (546)
||+|.|.+... ...|.|+|+|.+..+ +++||++.|+......|...++|.+|+...+++
T Consensus 67 nE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 67 NESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred cceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 99999998642 267999999999776 889999999987777788889999998765554
No 102
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=8.3e-15 Score=130.85 Aligned_cols=98 Identities=23% Similarity=0.342 Sum_probs=81.3
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEE-eeeeeeeCCCCCeEeeEEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVI-GRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~-~rT~vi~~t~nP~WNE~F~ 120 (546)
.|+|+|++|++|+++|. .|.+||||+|.+++... .||++++++.||+|||+|.
T Consensus 1 ~lrV~Vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~ 54 (124)
T cd04037 1 LVRVYVVRARNLQPKDP--------------------------NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFE 54 (124)
T ss_pred CEEEEEEECcCCCCCCC--------------------------CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEE
Confidence 37999999999998875 45699999999987653 4899999999999999999
Q ss_pred EeecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 121 VPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 121 ~~v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
|.+..+ ...|.|+|||++.++ +++||++.++|++...+ ..|....
T Consensus 55 f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~~---~~~~~~~ 101 (124)
T cd04037 55 LEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFFS---KHRATCG 101 (124)
T ss_pred EEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccccc---hHHHhcc
Confidence 997544 478999999999886 89999999999876632 3455543
No 103
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.58 E-value=1.5e-14 Score=128.69 Aligned_cols=101 Identities=24% Similarity=0.319 Sum_probs=82.9
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
.+.|.|+|++|++|++.+. .+.+||||++.+.. ....||++++++.||+|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~W 67 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDA--------------------------NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEF 67 (123)
T ss_pred CCEEEEEEEEeeCCCCCCC--------------------------CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCc
Confidence 4689999999999997765 35689999999832 34569999999999999
Q ss_pred eeEEEEeecCC----CceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccc
Q 009008 116 MQHFNVPVAHS----AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFP 166 (546)
Q Consensus 116 NE~F~~~v~~~----~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~ 166 (546)
||+|.|..... ...+.|+|||++..++++||++.+++++|..+...+.|+.
T Consensus 68 ne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 68 NETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred cceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999963222 3689999999987778899999999999997766665554
No 104
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.58 E-value=9.9e-15 Score=129.46 Aligned_cols=97 Identities=26% Similarity=0.373 Sum_probs=82.1
Q ss_pred EEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEE------EeeeeeeeCCCCCeEeeEE
Q 009008 46 WVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAV------IGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 46 ~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~------~~rT~vi~~t~nP~WNE~F 119 (546)
..++|++|++++. .|.+||||+|.+.+.. .+||++++++.||+|||+|
T Consensus 5 ~~i~a~~L~~~d~--------------------------~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f 58 (120)
T cd04048 5 LSISCRNLLDKDV--------------------------LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTF 58 (120)
T ss_pred EEEEccCCCCCCC--------------------------CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEE
Confidence 4588999998876 3568999999996543 5699999999999999999
Q ss_pred EEeec-CCCceEEEEEEecCC----cC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 120 NVPVA-HSAAEVHFVVKDNDF----VG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 120 ~~~v~-~~~~~l~~~V~D~d~----~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
.|.+. +..+.|.|+|||++. .+ +++||++.+++++|..+.....|++|.
T Consensus 59 ~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 59 TVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred EEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 99854 345789999999996 55 889999999999999877777889984
No 105
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.56 E-value=5.2e-14 Score=127.72 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E----------EEeeeeeeeC
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A----------VIGRTFVISN 109 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~----------~~~rT~vi~~ 109 (546)
+..|++++|++|+ ++. .|++||||++.+.. . ...+|+++++
T Consensus 2 ~~~~~~~~A~~L~-~~~--------------------------fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~ 54 (137)
T cd08691 2 SFSLSGLQARNLK-KGM--------------------------FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN 54 (137)
T ss_pred EEEEEEEEeCCCC-Ccc--------------------------CCCCCceEEEEEECCCcccccccccccceeeeeeEcC
Confidence 3678999999998 554 25699999999942 1 1459999999
Q ss_pred CCCCeE-eeEEEEeecCCCceEEEEEEecCCcC----CeeeEeEEEeceeccCC---CeeeeccccccCCCCcccCCceE
Q 009008 110 SESPVW-MQHFNVPVAHSAAEVHFVVKDNDFVG----SQIMGAVGIPVEKLCSG---DKIEGAFPILNSSRKPCKAGAVL 181 (546)
Q Consensus 110 t~nP~W-NE~F~~~v~~~~~~l~~~V~D~d~~~----~d~IG~~~i~l~~l~~g---~~~~~W~~L~~~~g~~~k~~g~I 181 (546)
++||+| ||+|.|.+. ..+.|.|+|+|++..+ +++||++.|+++++..+ .....|++|....... .-.|++
T Consensus 55 tlnP~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~ 132 (137)
T cd08691 55 TINPVWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQL 132 (137)
T ss_pred CCCCceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEE
Confidence 999999 999999986 4468999999976533 68999999999999864 3467899986443222 233566
Q ss_pred EEEE
Q 009008 182 SLSI 185 (546)
Q Consensus 182 ~l~l 185 (546)
.+.+
T Consensus 133 ~l~~ 136 (137)
T cd08691 133 TFRF 136 (137)
T ss_pred EEEe
Confidence 5543
No 106
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.55 E-value=3.4e-14 Score=149.84 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhh-cCCCeEEEEEecCCccccccCCcccCccCCCc
Q 009008 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS-QEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka-~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (546)
..++++++|.+||++|+|+.|.|-|...--.....+..|.++|++|| +|||+||||+ |..+.... ..
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~-----------~~ 284 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV-----------YS 284 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-----------hh
Confidence 46899999999999999999976544211111123469999999885 9999999997 76543210 01
Q ss_pred HHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCccc
Q 009008 330 EETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFK 409 (546)
Q Consensus 330 ~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~ 409 (546)
....+.|.++|+++....+. ..+.+|+|++|||+ .+|||||+|+...++..
T Consensus 285 ~~~~~~L~~~G~~~~i~vri--------------~~~~~H~K~~VVD~--------~~a~iGS~N~d~~s~~~------- 335 (369)
T PHA03003 285 MASVKSLQALCVGNDLSVKV--------------FRIPNNTKLLIVDD--------EFAHITSANFDGTHYLH------- 335 (369)
T ss_pred hhHHHHHHHcCCCCCceEee--------------ecCCCCceEEEEcC--------CEEEEeccccCchhhcc-------
Confidence 23455677788542110000 01237999999999 79999999998865532
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHHHHHHHhhc
Q 009008 410 TLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKA 462 (546)
Q Consensus 410 ~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~ 462 (546)
..|.++. ..+|++|.+++..|+++|+..
T Consensus 336 ------------------------~~e~~~~-~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 ------------------------HAFVSFN-TIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred ------------------------CCCeEEe-cCChhHHHHHHHHHHHHhCCc
Confidence 1223322 468999999999999999864
No 107
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.55 E-value=1.5e-14 Score=158.26 Aligned_cols=153 Identities=17% Similarity=0.248 Sum_probs=116.7
Q ss_pred ceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcC
Q 009008 220 GKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQE 299 (546)
Q Consensus 220 ~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~r 299 (546)
+.++++.+|+. ...+.+++.++++|.+||++|+|++. |++++ ..+.++|+.||+|
T Consensus 329 ~~~q~~~sgp~---------------~~~~~i~~~~l~~I~~A~~~I~I~tp------Yf~pd----~~l~~aL~~Aa~r 383 (509)
T PRK12452 329 GAVQIVASGPS---------------SDDKSIRNTLLAVMGSAKKSIWIATP------YFIPD----QETLTLLRLSAIS 383 (509)
T ss_pred eEEEEEeCCCC---------------chhHHHHHHHHHHHHHhhhEEEEECC------ccCCC----HHHHHHHHHHHHc
Confidence 46777777764 33445799999999999999999974 24444 6899999999999
Q ss_pred CCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCc
Q 009008 300 GVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADA 379 (546)
Q Consensus 300 GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~ 379 (546)
||+|+||+ +....... .........+.|.++||++..+.+. ..|+|++|||+
T Consensus 384 GV~Vrii~-p~~~D~~~--------~~~a~~~~~~~L~~aGv~I~~y~~~-----------------~lHaK~~ivD~-- 435 (509)
T PRK12452 384 GIDVRILY-PGKSDSII--------SDQASQSYFTPLLKAGASIYSYKDG-----------------FMHAKIVLVDD-- 435 (509)
T ss_pred CCEEEEEc-CCCCChHH--------HHHHHHHHHHHHHHcCCEEEEecCC-----------------CeeeeEEEECC--
Confidence 99999997 55332110 0111234456678899999876432 37999999999
Q ss_pred ccccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHHHHHHH
Q 009008 380 GQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERW 459 (546)
Q Consensus 380 ~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW 459 (546)
.+|+|||.|++...+. ..|.+.++...++.|.++...|+++|
T Consensus 436 ------~~a~vGS~Nld~RS~~--------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~ 477 (509)
T PRK12452 436 ------KIATIGTANMDVRSFE--------------------------------LNYEIISVLYESETVHDIKRDFEDDF 477 (509)
T ss_pred ------CEEEEeCcccCHhHhh--------------------------------hhhhccEEEECHHHHHHHHHHHHHHH
Confidence 7999999999874431 25668888899999999999999999
Q ss_pred hhcc
Q 009008 460 LKAS 463 (546)
Q Consensus 460 ~~~~ 463 (546)
..+.
T Consensus 478 ~~s~ 481 (509)
T PRK12452 478 KHST 481 (509)
T ss_pred HhCe
Confidence 9754
No 108
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=174.71 Aligned_cols=119 Identities=19% Similarity=0.392 Sum_probs=100.0
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeE
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~ 118 (546)
+.|.|.|+|++|+||. .+ .|++||||+|.++++...|||+++++.||+|||.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~---------------------------~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~ 2029 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QS---------------------------MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEG 2029 (2102)
T ss_pred CCcceEEEEeeccccc-cc---------------------------cCCCCCeEEEEECCCCcccccccCCCCCCCcccc
Confidence 5699999999999997 22 2569999999999663339999999999999999
Q ss_pred EEEeecCCC--ceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCce---EEEEEEeec
Q 009008 119 FNVPVAHSA--AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAV---LSLSIQYTP 189 (546)
Q Consensus 119 F~~~v~~~~--~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~---I~l~l~f~P 189 (546)
|+|.+.++. ..|.|+|||+|.++++.||.+.|++.++..++.+..||+|.++ |+ +.|+ |++.++|.+
T Consensus 2030 f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~-~~---k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2030 FTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE-SN---KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred eeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCcc-cc---cCCCcceEEEEEEecC
Confidence 998776654 7899999999999988999999999999999999999999853 22 1244 888888754
No 109
>PRK13912 nuclease NucT; Provisional
Probab=99.49 E-value=5.3e-13 Score=126.63 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCc
Q 009008 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (546)
++++.++++|++|+++|+|+.|. +.+ ..|.++|.+|++|||+|+||+ |...+... .
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~-------~~~----~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------------~ 88 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYS-------FTH----KDIAKALKSAAKRGVKISIIY-DYESNHNN------------D 88 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEE-------Ech----HHHHHHHHHHHHCCCEEEEEE-eCccccCc------------c
Confidence 36889999999999999999984 433 589999999999999999996 87654211 1
Q ss_pred HHHHHhhc-CCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCcc
Q 009008 330 EETRRFFK-HSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (546)
Q Consensus 330 ~~~~~~l~-~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~ 408 (546)
.....++. ..++++.......... ......+|+|++|||+ +++++||.|++...+..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~--------~~~~iGS~N~t~~s~~~------ 146 (177)
T PRK13912 89 QSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDD--------KIVVLGSANWSKNAFEN------ 146 (177)
T ss_pred hhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcC--------CEEEEeCCCCChhHhcc------
Confidence 11222232 2456665542211000 0112368999999999 79999999999866532
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChH-HHHHHHHHHHHHhhcc
Q 009008 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLKAS 463 (546)
Q Consensus 409 ~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpa-a~dl~~~F~~rW~~~~ 463 (546)
. +++.+.++.|. +.++.+.|.+.|..+.
T Consensus 147 -----------------------N----~E~~lii~d~~~~~~~~~~F~~~~~~s~ 175 (177)
T PRK13912 147 -----------------------N----YEVLLITDDTETILKAKEYFQKMLGSCV 175 (177)
T ss_pred -----------------------C----CceEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 0 34566777775 7999999999998653
No 110
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.45 E-value=4.2e-13 Score=116.98 Aligned_cols=87 Identities=26% Similarity=0.422 Sum_probs=72.3
Q ss_pred EEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE-----EEeeeeeeeCCCCCeEeeEE
Q 009008 45 IWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA-----VIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 45 V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~-----~~~rT~vi~~t~nP~WNE~F 119 (546)
+.+++|++|+.+|. .|++||||+|.+.+. ...+|+++++++||+|| +|
T Consensus 4 ~~~i~a~~L~~~d~--------------------------~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f 56 (110)
T cd04047 4 ELQFSGKKLDKKDF--------------------------FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PF 56 (110)
T ss_pred EEEEEeCCCCCCCC--------------------------CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EE
Confidence 45679999998886 356999999998542 35699999999999999 78
Q ss_pred EEeecC-----CCceEEEEEEecCCcC-CeeeEeEEEeceeccCC
Q 009008 120 NVPVAH-----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG 158 (546)
Q Consensus 120 ~~~v~~-----~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g 158 (546)
.|++.+ ....|.|+|||++.++ +++||++.+++++|..+
T Consensus 57 ~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 57 TIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred EEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 887542 2578999999999987 78999999999999843
No 111
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-13 Score=147.87 Aligned_cols=126 Identities=24% Similarity=0.292 Sum_probs=111.1
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
..|.|+|.||+||+..+. .|++||||+|.++.+.+.||.++.+++.|.|.|.|+
T Consensus 5 ~sl~vki~E~knL~~~~~--------------------------~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~ 58 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGP--------------------------SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFY 58 (800)
T ss_pred cceeEEEeecccCCCCCC--------------------------CCCcCcceEEeecchhhhhhhhhhhhcCCccccceE
Confidence 569999999999998875 677999999999999999999999999999999999
Q ss_pred EeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeecccccc
Q 009008 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMS 194 (546)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~~~~ 194 (546)
|.++..-..|.|.|||.| ++ |+.||.+.|.-++|......+.|+.|..-+... .-.|++||++++.+..+..
T Consensus 59 ~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 59 FEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQSS 131 (800)
T ss_pred EecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCCh-hhceeEEEEEEeccccCCC
Confidence 999988899999999999 65 899999999999999877889999996543333 2458999999999877643
No 112
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.37 E-value=2.6e-12 Score=105.31 Aligned_cols=81 Identities=35% Similarity=0.610 Sum_probs=68.6
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeeeCCCCCeEeeEEE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--VIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~--~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|+|+|++|++|+..+. .+..||||+|.+.+. ...+|+++.++.+|.|||+|.
T Consensus 1 L~v~I~~a~~L~~~~~--------------------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~ 54 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDS--------------------------NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFE 54 (85)
T ss_dssp EEEEEEEEESSSSSST--------------------------TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEE
T ss_pred CEEEEEEEECCCCccc--------------------------CCcccccceeecceeeeeeeeeeeeeccccceeeeeee
Confidence 7899999999997664 346899999999773 235999999999999999999
Q ss_pred EeecC-CCceEEEEEEecCCcC-CeeeEeEE
Q 009008 121 VPVAH-SAAEVHFVVKDNDFVG-SQIMGAVG 149 (546)
Q Consensus 121 ~~v~~-~~~~l~~~V~D~d~~~-~d~IG~~~ 149 (546)
|++.. ....|.|+|||.+..+ +++||++.
T Consensus 55 ~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 55 FPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 99643 3466999999999988 88999974
No 113
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.8e-12 Score=137.42 Aligned_cols=119 Identities=24% Similarity=0.357 Sum_probs=96.3
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
..+.+||++|++|...|. .|++||||++++++.+. ||++|...+||+|||.|+
T Consensus 295 akitltvlcaqgl~akdk--------------------------tg~sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfh 347 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDK--------------------------TGKSDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFH 347 (1283)
T ss_pred eeeEEeeeecccceeccc--------------------------CCCCCCcEEEeecccch-hhHhhhhccchhhhhhee
Confidence 457899999999988775 67799999999999888 999999999999999999
Q ss_pred EeecCCCceEEEEEEecCC------------cCCeeeEeEEEeceeccCCCeeeeccccccCCCCc-ccCCceEEEEEEe
Q 009008 121 VPVAHSAAEVHFVVKDNDF------------VGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP-CKAGAVLSLSIQY 187 (546)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~------------~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~-~k~~g~I~l~l~f 187 (546)
|.+......|.+.|||.|. -++||||+..|.+..|. | .++-||.|.....++ +.+...++++++.
T Consensus 348 fechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 348 FECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred eeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhccchhhccceEEEEEEEEE
Confidence 9999888999999999773 14889999999999875 3 578899997654443 2232344555544
Q ss_pred e
Q 009008 188 T 188 (546)
Q Consensus 188 ~ 188 (546)
+
T Consensus 426 k 426 (1283)
T KOG1011|consen 426 K 426 (1283)
T ss_pred c
Confidence 3
No 114
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.32 E-value=1e-11 Score=103.49 Aligned_cols=99 Identities=37% Similarity=0.569 Sum_probs=83.6
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|.|.|++|++|+.... ....+|||++.+.+...++|+++.++.||.|||.|.|.
T Consensus 1 l~v~i~~~~~l~~~~~--------------------------~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~ 54 (102)
T cd00030 1 LRVTVIEARNLPAKDL--------------------------NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFP 54 (102)
T ss_pred CEEEEEeeeCCCCcCC--------------------------CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEE
Confidence 5789999999976432 34589999999998555599999999999999999999
Q ss_pred ecC-CCceEEEEEEecCCcC-CeeeEeEEEeceecc-CCCeeeecccc
Q 009008 123 VAH-SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC-SGDKIEGAFPI 167 (546)
Q Consensus 123 v~~-~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~-~g~~~~~W~~L 167 (546)
+.. ....|.|+|++.+..+ ..+||.+.+++.++. .......|++|
T Consensus 55 ~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 55 VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 987 5688999999988876 789999999999988 56666777765
No 115
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.30 E-value=1.1e-11 Score=135.31 Aligned_cols=154 Identities=22% Similarity=0.208 Sum_probs=111.6
Q ss_pred CceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhc
Q 009008 219 GGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQ 298 (546)
Q Consensus 219 g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~ 298 (546)
++.++++.+|+. ...+.+.+.+.++|.+|+++|+|++- |++++ ..+.++|+.||+
T Consensus 302 ~~~~qi~~sgP~---------------~~~~~~~~~~~~~I~~A~~~I~I~tp------Yfip~----~~i~~aL~~Aa~ 356 (483)
T PRK01642 302 GHTVQVIASGPG---------------DPEETIHQFLLTAIYSARERLWITTP------YFVPD----EDLLAALKTAAL 356 (483)
T ss_pred CceEEEEeCCCC---------------ChhhHHHHHHHHHHHHhccEEEEEcC------CcCCC----HHHHHHHHHHHH
Confidence 456777777664 33334678899999999999999872 14444 689999999999
Q ss_pred CCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccC
Q 009008 299 EGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDAD 378 (546)
Q Consensus 299 rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~ 378 (546)
|||+|+||+ +....... .........+.|.++||++..+.+. ..|.|++|||+
T Consensus 357 rGV~Vril~-p~~~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y~~~-----------------~~HaK~~ivD~- 409 (483)
T PRK01642 357 RGVDVRIII-PSKNDSLL--------VFWASRAFFTELLEAGVKIYRYEGG-----------------LLHTKSVLVDD- 409 (483)
T ss_pred cCCEEEEEe-CCCCCcHH--------HHHHHHHHHHHHHHcCCEEEEeCCC-----------------ceEeEEEEECC-
Confidence 999999997 54322111 1111233455677899999876322 26999999999
Q ss_pred cccccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccCh-HHHHHHHHHHH
Q 009008 379 AGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEE 457 (546)
Q Consensus 379 ~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gp-aa~dl~~~F~~ 457 (546)
.+|+||+.|++...+.. =+++.+.+.+| .+.++.+.|++
T Consensus 410 -------~~~~vGS~N~d~rS~~~---------------------------------N~E~~~~i~d~~~~~~l~~~f~~ 449 (483)
T PRK01642 410 -------ELALVGTVNLDMRSFWL---------------------------------NFEITLVIDDTGFAADLAAMQED 449 (483)
T ss_pred -------CEEEeeCCcCCHhHHhh---------------------------------hhcceEEEECHHHHHHHHHHHHH
Confidence 79999999997643321 03667888887 58999999999
Q ss_pred HHhhccC
Q 009008 458 RWLKASK 464 (546)
Q Consensus 458 rW~~~~~ 464 (546)
+|..+..
T Consensus 450 d~~~s~~ 456 (483)
T PRK01642 450 YFARSRE 456 (483)
T ss_pred HHHhCeE
Confidence 9987543
No 116
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=2.1e-11 Score=102.28 Aligned_cols=93 Identities=38% Similarity=0.592 Sum_probs=79.3
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeeeCCCCCeEeeEE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--VIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~--~~~rT~vi~~t~nP~WNE~F 119 (546)
+|.|+|++|++|+..+. .+..+|||++.+... ...+|+++.++.||.|||+|
T Consensus 1 ~l~i~i~~~~~l~~~~~--------------------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~ 54 (101)
T smart00239 1 TLTVKIISARNLPKKDK--------------------------KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETF 54 (101)
T ss_pred CeEEEEEEeeCCCCCCC--------------------------CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceE
Confidence 37899999999986543 234799999999876 45699999999999999999
Q ss_pred EEeecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCe
Q 009008 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK 160 (546)
Q Consensus 120 ~~~v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~ 160 (546)
.|++... ...|.|+|+|.+..+ +.+||.+.+++.++..+..
T Consensus 55 ~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 55 EFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 9999877 789999999988776 7899999999998876644
No 117
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.29 E-value=9.6e-12 Score=140.65 Aligned_cols=126 Identities=24% Similarity=0.400 Sum_probs=104.5
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~ 120 (546)
|+|.|+|.+|++|...+.. | .++.|||+++.+.+...|||++.+++.||+|||+|+
T Consensus 436 GVv~vkI~sa~~lk~~d~~------------------i------~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Y 491 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDST------------------I------NGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFY 491 (1227)
T ss_pred EEEEEEEeeccCccccccc------------------c------cCCCCceEEEEeccccCCccceeeccCCccccceEE
Confidence 9999999999999877631 1 578999999999998899999999999999999999
Q ss_pred EeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCee-eeccccccCCCCcccCCceEEEEEEeecccccc
Q 009008 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKI-EGAFPILNSSRKPCKAGAVLSLSIQYTPVENMS 194 (546)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~-~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~~~~ 194 (546)
+.+....+.|.|+|||.+.+. +.++|.+.++|..|...+.. +.-+.+.. +.+ ..|.+++.++|.|..+..
T Consensus 492 i~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~-~~k---~vGrL~yDl~ffp~~e~k 563 (1227)
T COG5038 492 ILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR-NTK---NVGRLTYDLRFFPVIEDK 563 (1227)
T ss_pred EEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeec-cCc---cceEEEEeeeeecccCCc
Confidence 999988899999999966555 88999999999888754333 33455542 333 448999999999987754
No 118
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.28 E-value=9e-12 Score=140.88 Aligned_cols=138 Identities=21% Similarity=0.349 Sum_probs=112.3
Q ss_pred cCCCCCCCCceEEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeee
Q 009008 25 VPFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRT 104 (546)
Q Consensus 25 ~~~~~~~~~~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT 104 (546)
.|.++...+..++-..|.|+|.+..|.||++.|. +|.+||||++.+.++.+.+|
T Consensus 1024 tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~--------------------------ng~sDpfv~~~ln~k~vykt 1077 (1227)
T COG5038 1024 TPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE--------------------------NGYSDPFVKLFLNEKSVYKT 1077 (1227)
T ss_pred eecccccCcceeecccCcEEEEEeccCCCccccc--------------------------CCCCCceEEEEecceecccc
Confidence 3556677778888889999999999999998886 67799999999999888899
Q ss_pred eeeeCCCCCeEeeEEEEeecC-CCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEE
Q 009008 105 FVISNSESPVWMQHFNVPVAH-SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLS 182 (546)
Q Consensus 105 ~vi~~t~nP~WNE~F~~~v~~-~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~ 182 (546)
+++++++||+|||+|.+++.. ....+.+.|+|||.-. ++.||.+.|+|+.|..+.....-.+|..+. ....+|.++
T Consensus 1078 kv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~~~ 1155 (1227)
T COG5038 1078 KVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGTLH 1155 (1227)
T ss_pred cchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcc--eEecccEee
Confidence 999999999999999999874 4578999999999876 789999999999998776665555554332 223456666
Q ss_pred EEEEeecc
Q 009008 183 LSIQYTPV 190 (546)
Q Consensus 183 l~l~f~P~ 190 (546)
....|.+.
T Consensus 1156 ~~~~~r~~ 1163 (1227)
T COG5038 1156 PGFNFRSK 1163 (1227)
T ss_pred cceecchh
Confidence 66666553
No 119
>PLN02223 phosphoinositide phospholipase C
Probab=99.27 E-value=3.3e-11 Score=129.56 Aligned_cols=123 Identities=25% Similarity=0.411 Sum_probs=93.1
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
..+|.|+|+.|++++ .+.. +. .+.....||||+|.+.+ ....+|++..|+.||+|
T Consensus 408 ~~~L~V~Visgq~~~-~~~~-k~-------------------~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvW 466 (537)
T PLN02223 408 VKILKVKIYMGDGWI-VDFK-KR-------------------IGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTW 466 (537)
T ss_pred ceEEEEEEEEccccc-CCcc-cc-------------------cCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCcee
Confidence 467999999999885 2210 00 00123479999999964 22337888888999999
Q ss_pred eeEEEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 116 NE~F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
||+|.|++..+. .-|+|+|+|+|..+ ++++|++.+|++.|..|. ++++|.+..|+++. ...+.+.++|
T Consensus 467 ne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 467 GEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred cceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEEe
Confidence 999999986554 67899999999866 889999999999999886 67899999998763 3455555444
No 120
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.6e-11 Score=131.23 Aligned_cols=114 Identities=30% Similarity=0.442 Sum_probs=92.4
Q ss_pred ceEEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeeeC
Q 009008 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISN 109 (546)
Q Consensus 34 ~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~--~~~~rT~vi~~ 109 (546)
+..+..+|.|.|.|++|++|+.++. ++.+||||++.+- + ....+|.+.++
T Consensus 291 L~Y~p~~g~ltv~v~kar~L~~~~~--------------------------~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~ 344 (421)
T KOG1028|consen 291 LCYLPTAGRLTVVVIKARNLKSMDV--------------------------GGLSDPYVKVTLLDGDKRLSKKKTSVKKK 344 (421)
T ss_pred EEeecCCCeEEEEEEEecCCCcccC--------------------------CCCCCccEEEEEecCCceeeeeeeecccC
Confidence 3444567999999999999998886 6779999999993 2 33448999999
Q ss_pred CCCCeEeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 110 SESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 110 t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
+.||+|||+|.|.++.. ...|.|+|||++.++ +++||.+.+.... .+....+|.+++...++++
T Consensus 345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 99999999999987643 257899999999998 6799988887654 5566789999988777654
No 121
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.19 E-value=5.8e-11 Score=105.47 Aligned_cols=124 Identities=23% Similarity=0.399 Sum_probs=84.8
Q ss_pred HHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccC-CCcHHHH
Q 009008 255 VYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMS-TNDEETR 333 (546)
Q Consensus 255 l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~-~~~~~~~ 333 (546)
|.++|++|+++|+|+.+.+ . ...|.++|..++++||+|+|++ +...... ..+. .......
T Consensus 1 l~~~i~~A~~~i~i~~~~~-------~----~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~~~~~~~ 61 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYI-------T----DPDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLASLKELR 61 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHHHHHHHH
T ss_pred CHHHHhccCCEEEEEEEec-------C----cHHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhHHHHHHH
Confidence 5689999999999999854 2 2578899999999999999997 5432100 0000 0112333
Q ss_pred HhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCccccccc
Q 009008 334 RFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLET 413 (546)
Q Consensus 334 ~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~ 413 (546)
+.+...|+++. .+.|.|++|||+ .++++||.|++...|.
T Consensus 62 ~~~~~~~i~v~---------------------~~~H~K~~i~d~--------~~~iiGS~N~t~~~~~------------ 100 (126)
T PF13091_consen 62 ELLKNAGIEVR---------------------NRLHAKFYIIDD--------KVAIIGSANLTSSSFR------------ 100 (126)
T ss_dssp HHHHHTTHCEE---------------------S-B--EEEEETT--------TEEEEES--CSCCCSC------------
T ss_pred hhhccceEEEe---------------------cCCCcceEEecC--------ccEEEcCCCCCcchhc------------
Confidence 44467777765 147999999998 6999999999986652
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCeeeccccccChH-HHHHHHHHHHHH
Q 009008 414 VHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERW 459 (546)
Q Consensus 414 ~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpa-a~dl~~~F~~rW 459 (546)
..+++.+.+++|. +.++.+.|.+.|
T Consensus 101 ---------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 ---------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ---------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ---------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2368899999996 999999999989
No 122
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.18 E-value=1.1e-10 Score=124.54 Aligned_cols=134 Identities=20% Similarity=0.217 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhccceEEEEE-EeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCC
Q 009008 250 SCWQDVYDAINQARRLIYITG-WSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTN 328 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~ 328 (546)
.+.+.+.++|.+|+++|+|+. | ++++ ..|.++|+.|++|||+|+||+ +....... ....
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tpY-------f~p~----~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~--------~~~a 265 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANAY-------FFPG----YRLLRALRNAARRGVRVRLIL-QGEPDMPI--------VRVG 265 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEecC-------cCCC----HHHHHHHHHHHHCCCEEEEEe-CCCCCcHH--------HHHH
Confidence 357889999999999999986 4 5443 789999999999999999998 65433211 1112
Q ss_pred cHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCcc
Q 009008 329 DEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (546)
Q Consensus 329 ~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~ 408 (546)
.......|.++||++..+... ..|.|++|||+ .+++||+.|++...+.
T Consensus 266 ~~~~~~~Ll~~Gv~I~~y~~~-----------------~lHaK~~viD~--------~~~~vGS~Nld~rS~~------- 313 (411)
T PRK11263 266 ARLLYNYLLKGGVQIYEYCRR-----------------PLHGKVALMDD--------HWATVGSSNLDPLSLS------- 313 (411)
T ss_pred HHHHHHHHHHCCCEEEEecCC-----------------CceeEEEEECC--------CEEEEeCCcCCHHHhh-------
Confidence 234456778899998765321 36999999999 7999999999763321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChH-HHHHHHHHHHHHhh
Q 009008 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLK 461 (546)
Q Consensus 409 ~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpa-a~dl~~~F~~rW~~ 461 (546)
+| ..+.+.|.+|. +..+...|++.+..
T Consensus 314 --lN------------------------~E~~~~i~d~~~a~~l~~~~~~~~~~ 341 (411)
T PRK11263 314 --LN------------------------LEANLIIRDRAFNQTLRDNLNGLIAA 341 (411)
T ss_pred --hh------------------------hhcCEEEeCHHHHHHHHHHHHHHHHh
Confidence 00 25567788875 78888999999973
No 123
>PLN02952 phosphoinositide phospholipase C
Probab=99.18 E-value=1.9e-10 Score=126.09 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=91.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
..+|.|+|+.|++|+-.-. .. +.+.....||||+|.+.+ ....+|+++.++.||+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~-~~-------------------~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvW 528 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFS-HT-------------------HFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAW 528 (599)
T ss_pred cceEEEEEEECcccCCCCc-cc-------------------cCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCccc
Confidence 4679999999998852110 00 000112359999999954 23339999999999999
Q ss_pred eeEEEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEE
Q 009008 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (546)
Q Consensus 116 NE~F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~ 186 (546)
||+|.|++..+. ..|.|+|+|+|..+ ++++|++.|||+.|..|. +|++|.+..|.++. ...+.+.+.
T Consensus 529 nE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~-~a~Llv~f~ 597 (599)
T PLN02952 529 NEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK-NVRLLMRFI 597 (599)
T ss_pred CCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC-CEEEEEEEE
Confidence 999999876543 67899999999876 889999999999999886 59999999888652 334444443
No 124
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.16 E-value=2.7e-10 Score=124.73 Aligned_cols=124 Identities=21% Similarity=0.320 Sum_probs=93.2
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
..+|.|+|+.+++++....-. +..+....||||+|.+-+ ....+|++..|+.||+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~--------------------~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~W 527 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKT--------------------HFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIW 527 (598)
T ss_pred CcEEEEEEEEccCccCCCccc--------------------cCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCcc
Confidence 467999999999874211100 001123479999999953 23348999889999999
Q ss_pred eeEEEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 116 NE~F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
||+|.|++.-+. ..|+|.|+|+|..+ +++||+..||++.|..|. +.++|.+..|.++. ...+.+.+.|
T Consensus 528 neef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 528 NKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred CCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 999999876553 78999999999865 889999999999999886 57899999998763 3456555554
No 125
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.16 E-value=2.3e-10 Score=102.95 Aligned_cols=95 Identities=22% Similarity=0.207 Sum_probs=76.0
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeeeCCCC--CeEeeE
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSES--PVWMQH 118 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~rT~vi~~t~n--P~WNE~ 118 (546)
|+|.|.+|++++.++.. + .+...+||||++.+.+ ....+|.|..+++| |.||+.
T Consensus 2 LRViIw~~~~v~~~~~~------------------~----~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwR 59 (133)
T cd08374 2 LRVIVWNTRDVLNDDTN------------------I----TGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWR 59 (133)
T ss_pred EEEEEEECcCCcccccc------------------c----CCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEE
Confidence 89999999997755431 0 0122599999999975 45559999999999 999999
Q ss_pred EEEeecCC------------------------CceEEEEEEecCCcC-CeeeEeEEEeceeccCCC
Q 009008 119 FNVPVAHS------------------------AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD 159 (546)
Q Consensus 119 F~~~v~~~------------------------~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~ 159 (546)
|.|++..+ ...|.|+|||+|.++ +++||++.++|..+..+.
T Consensus 60 fvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 60 FVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred EEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 99886541 257899999999988 899999999999887654
No 126
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.15 E-value=2e-10 Score=123.14 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=99.5
Q ss_pred HHHHHHHHHhccceEEEEEEeecceeeEEeC-CCCchHHHHHHHh-hhcCCCeEEEEEecCCccccccCCcccCccCCCc
Q 009008 252 WQDVYDAINQARRLIYITGWSVYHTVRLVRD-GSNTLMLGDLLKI-KSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (546)
Q Consensus 252 f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~-~~~~~~l~~~L~~-ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (546)
.++++.+|.+||++|+|+.-.|-|.++...+ ...+..|.++|++ |++|||+||||+-. ...... ++ ...
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~-~~d~~~-------~~-~a~ 290 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISC-WQRSSF-------IM-RNF 290 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCEEEEEEec-cCCCCc-------cH-HHH
Confidence 5899999999999999999877776443322 2345799999996 66799999999821 111000 11 111
Q ss_pred HHHHHhhcCCCcEEE----EccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCC
Q 009008 330 EETRRFFKHSSVQVL----LCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (546)
Q Consensus 330 ~~~~~~l~~~gv~v~----~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H 405 (546)
......|..+|+++. .+|...+ ..+...-+|.|++|||+ .|+||..|+...++...
T Consensus 291 ~~~l~~L~~~gv~I~Vk~y~~p~~~~---------~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~n-- 350 (424)
T PHA02820 291 LRSIAMLKSKNINIEVKLFIVPDADP---------PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTDT-- 350 (424)
T ss_pred HHHHHHHhccCceEEEEEEEcCcccc---------cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhcc--
Confidence 222334456777663 2453210 11122358999999997 59999999998776420
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccC----hHHHHHHHHHHHHHhhc
Q 009008 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDG----PAAYDILTNFEERWLKA 462 (546)
Q Consensus 406 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~G----paa~dl~~~F~~rW~~~ 462 (546)
..+.+-+.. +.+.+|...|+++|+..
T Consensus 351 -------------------------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~ 380 (424)
T PHA02820 351 -------------------------------CGVSINITPDDGLGLRQQLEDIFIRDWNSK 380 (424)
T ss_pred -------------------------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCC
Confidence 133444443 58999999999999964
No 127
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.14 E-value=2.9e-10 Score=117.31 Aligned_cols=150 Identities=19% Similarity=0.341 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcH
Q 009008 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDE 330 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~ 330 (546)
-.++|++.|.+|+++|||+.....|......+ ..-+.|.++|++||-|||+||+||-+..-+ ++
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~fw~iDdaiR~aa~RgV~vR~lvs~~~~~---------------~~ 340 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HRFWEIDDAIRRAAVRGVKVRLLVSCWKHS---------------EP 340 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-cchhhhhHHHHHHhhcceEEEEEEeccCCC---------------Cc
Confidence 48999999999999999999998888776666 444599999999999999999998322211 11
Q ss_pred HHHHh----------hcCCCcEEEEc--cCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCc
Q 009008 331 ETRRF----------FKHSSVQVLLC--PRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKG 398 (546)
Q Consensus 331 ~~~~~----------l~~~gv~v~~~--p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~ 398 (546)
....+ +++..|+|.++ |..... ..+....+|.|++|-+. .||||.-|++.+
T Consensus 341 ~m~~~L~SLq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~d 403 (456)
T KOG3603|consen 341 SMFRFLRSLQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGD 403 (456)
T ss_pred hHHHHHHHHHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCcc
Confidence 22222 24556777765 443211 22344579999999995 999999999999
Q ss_pred ccCCCCCCcccccccccCCCCCCCCCCCCCCCCC---CCCeeeccccccChHHHHHHHHHHHHHhhccC
Q 009008 399 RYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGP---REPWHDLHCRIDGPAAYDILTNFEERWLKASK 464 (546)
Q Consensus 399 r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~~~~ 464 (546)
||-... |.. +++- -.|+++.+|...|+++|+....
T Consensus 404 Yf~~Ta-------------------------G~~ivv~q~~------~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 404 YFTSTA-------------------------GTAIVVRQTP------HKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred ceeccC-------------------------ceEEEEecCC------CCCcHHHHHHHHHhhccccccc
Confidence 985311 000 1110 4589999999999999997543
No 128
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.11 E-value=2.8e-10 Score=124.74 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=95.0
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeee-eeCCCCCeEe
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFV-ISNSESPVWM 116 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~v-i~~t~nP~WN 116 (546)
+|.|+|+.+++++.....+ .++..+||||.|++.+ ....+|++ ..|+-||.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~----------------------~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~ 674 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKT----------------------KFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWD 674 (746)
T ss_pred eeEEEEEecCcccCCCCCC----------------------cccccCCCCEEEEEcccccchhhhhceeeccCCcCcccC
Confidence 7999999999765332111 1135589999999965 33449995 4568999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEee
Q 009008 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (546)
Q Consensus 117 E~F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~ 188 (546)
|+|.|++..+. .-|+|.|+|+|..+ ++|+|+..+|+++|..|. +-++|.+..|..+ ....+.+.+.+.
T Consensus 675 e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 675 EEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 99999987665 78899999999998 999999999999999886 4689999888875 335777777664
No 129
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.10 E-value=9.8e-10 Score=120.25 Aligned_cols=122 Identities=20% Similarity=0.348 Sum_probs=92.7
Q ss_pred ceEEEEEEEEeecCC--CCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCC
Q 009008 40 HGNLDIWVKEAKNLP--NMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESP 113 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP 113 (546)
..+|.|+|+.+++++ -.... ..+....||||+|.+.+ ....||+++.++.||
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~----------------------~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP 508 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTH----------------------FDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIP 508 (581)
T ss_pred cceEEEEEEEcccccCCCCccc----------------------cCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCc
Confidence 367999999998753 11100 01123479999999953 233499999999999
Q ss_pred eEeeEEEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 114 VWMQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 114 ~WNE~F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
+|||+|.|.+..+. ..|+|+|+|+|..+ +++||++.||++.|..|. +.++|.+..|.++. ...+.+.+.|
T Consensus 509 ~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 509 AWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred ccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 99999999876553 78899999998766 889999999999999886 57899999998763 3466665554
No 130
>PLN02228 Phosphoinositide phospholipase C
Probab=99.06 E-value=1.2e-09 Score=119.25 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=94.5
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (546)
..+|.|+|+.|++|+-.-... +..+....||||+|.+.+ ....||+++.|+.||+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~--------------------~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W 489 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLT--------------------HFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIW 489 (567)
T ss_pred CceEEEEEEECCccCCCCCCC--------------------CCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceE
Confidence 357999999999874110000 000123379999999953 22239999988999999
Q ss_pred -eeEEEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeec
Q 009008 116 -MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (546)
Q Consensus 116 -NE~F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P 189 (546)
||+|.|.+..+. ..|+|+|+|+|..+ +++||++.|||+.|..|. +.++|.+..|.+. ..+.+.+.+.+.+
T Consensus 490 ~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 490 GNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred CCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 999999876553 78899999998765 889999999999999886 5789999999875 3457777777654
No 131
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.00 E-value=1.3e-09 Score=92.70 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=71.0
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
|.|+|..|+++...+... ..+.+||||.|.+++...+||+. +.||.|||+|.|+
T Consensus 1 L~I~V~~~RdvdH~~~~~-----------------------~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~ 54 (109)
T cd08689 1 LTITITSARDVDHIASPR-----------------------FSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIP 54 (109)
T ss_pred CEEEEEEEecCccccchh-----------------------hccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEE
Confidence 689999999997655310 14558999999999987889998 6899999999999
Q ss_pred ecCCCceEEEEEEecCCcCCeeeEeEEEeceeccC
Q 009008 123 VAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCS 157 (546)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~ 157 (546)
+. ....+.|+|||...-..-.||..=+.+++|..
T Consensus 55 Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 55 VE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred ec-CCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 94 57899999999754334588888888887763
No 132
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.88 E-value=4.2e-09 Score=111.09 Aligned_cols=119 Identities=25% Similarity=0.479 Sum_probs=97.9
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeE-
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH- 118 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~- 118 (546)
.|.|.|+|..|++||-||.. +.+.|.||.|+++..+. ||.|..+++||.||..
T Consensus 2 pgkl~vki~a~r~lpvmdka-------------------------sd~tdafveik~~n~t~-ktdvf~kslnp~wnsdw 55 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKA-------------------------SDLTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDW 55 (1169)
T ss_pred CCcceeEEEeccCCcccccc-------------------------cccchheeEEEecccce-ehhhhhhhcCCcccccc
Confidence 48899999999999999974 35689999999999988 9999999999999984
Q ss_pred EEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccC----------CCeeeeccccccCCCCcccCCceEEEE
Q 009008 119 FNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS----------GDKIEGAFPILNSSRKPCKAGAVLSLS 184 (546)
Q Consensus 119 F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~----------g~~~~~W~~L~~~~g~~~k~~g~I~l~ 184 (546)
|.|.+.+. .+.|.|.+.|+|..+ +|.||.+.|.++.|.- |..+.+|+|+.+.-.- -.|+|++.
T Consensus 56 fkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinvi 132 (1169)
T KOG1031|consen 56 FKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVI 132 (1169)
T ss_pred eEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEE
Confidence 77887654 478999999999988 8999999999887762 4567899999876211 23677766
Q ss_pred EEe
Q 009008 185 IQY 187 (546)
Q Consensus 185 l~f 187 (546)
+..
T Consensus 133 vkv 135 (1169)
T KOG1031|consen 133 VKV 135 (1169)
T ss_pred EEE
Confidence 654
No 133
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.85 E-value=7.1e-10 Score=71.77 Aligned_cols=27 Identities=63% Similarity=0.966 Sum_probs=18.4
Q ss_pred ccccccceEEEccCcccccceEEEEEccccccCcc
Q 009008 365 IYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGR 399 (546)
Q Consensus 365 ~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r 399 (546)
.++||||++|||+ .+||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~--------~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDD--------RVAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETT--------TEEEEE---SSHHH
T ss_pred CcceeeEEEEEcC--------CEEEECceecCCCC
Confidence 4689999999999 69999999999865
No 134
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.80 E-value=1.9e-08 Score=109.76 Aligned_cols=122 Identities=26% Similarity=0.417 Sum_probs=90.7
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeeeCCCCCe
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPV 114 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~-----~~~~rT~vi~~t~nP~ 114 (546)
.-+|.|.|+.|++|+... +|..-|+|.|.+-+ .+...|.|+.|++||+
T Consensus 1064 p~~lsv~vigaRHL~k~g---------------------------r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPi 1116 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG---------------------------RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPI 1116 (1267)
T ss_pred ceEEEEEEeeccccccCC---------------------------CCccCCcEEEEEeccccCCCceEEEEeccCCCCCC
Confidence 357899999999998432 34567999999954 3443566778899999
Q ss_pred Ee-eEEEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeeccc
Q 009008 115 WM-QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVE 191 (546)
Q Consensus 115 WN-E~F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~ 191 (546)
|| |+|+|.+..+. ..|+|.|+|.|.++ ..|||++.+|+..|..|. +-++|.+.-..-+ .-+.+.+.++-.|+.
T Consensus 1117 Wn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1117 WNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLVFIEMRPVL 1192 (1267)
T ss_pred CCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhheeeeEecccc
Confidence 99 99999987765 78999999999999 579999999999999885 3467765433211 123455556655544
Q ss_pred c
Q 009008 192 N 192 (546)
Q Consensus 192 ~ 192 (546)
.
T Consensus 1193 ~ 1193 (1267)
T KOG1264|consen 1193 E 1193 (1267)
T ss_pred C
Confidence 3
No 135
>PRK05443 polyphosphate kinase; Provisional
Probab=98.77 E-value=4.4e-08 Score=110.25 Aligned_cols=140 Identities=16% Similarity=0.079 Sum_probs=104.9
Q ss_pred hHHHHHHHHHhccc-----eEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCcc
Q 009008 251 CWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~ 325 (546)
-|+.+++.|++|.+ +|.++.|.+. . ...+.++|..||++||+|+||| +...- ..
T Consensus 349 SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~-------~---~s~iv~aL~~Aa~~Gk~V~vlv-e~kar----------fd 407 (691)
T PRK05443 349 SFDPVVEFLRQAAADPDVLAIKQTLYRTS-------K---DSPIVDALIEAAENGKQVTVLV-ELKAR----------FD 407 (691)
T ss_pred CchHHHHHHHHhccCCCeeEEEEEEEEec-------C---CHHHHHHHHHHHHcCCEEEEEE-ccCcc----------cc
Confidence 58889999999988 8999998432 1 2799999999999999999998 54321 11
Q ss_pred CCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCC
Q 009008 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (546)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H 405 (546)
...+..+.+.|.++||+|..-.+ .+..|.|+++||+... .+-+..|++|+.|+....
T Consensus 408 e~~n~~~~~~L~~aGv~V~y~~~----------------~~k~HaK~~lid~~e~-~~~~~~~~iGTgN~n~~s------ 464 (691)
T PRK05443 408 EEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREG-GGLRRYVHLGTGNYNPKT------ 464 (691)
T ss_pred HHHHHHHHHHHHHcCCEEEEccC----------------CccceeEEEEEEeecC-CceeEEEEEcCCCCCcch------
Confidence 12345567778999999965221 1357999999998422 223459999999987732
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCeeecccccc-ChHHHHHHHHHHHHHhh
Q 009008 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRID-GPAAYDILTNFEERWLK 461 (546)
Q Consensus 406 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~-Gpaa~dl~~~F~~rW~~ 461 (546)
...|.|+++... +..+.++...|...|..
T Consensus 465 ---------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~ 494 (691)
T PRK05443 465 ---------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGY 494 (691)
T ss_pred ---------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCc
Confidence 236789998855 56899999999999875
No 136
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.66 E-value=6.8e-09 Score=112.17 Aligned_cols=93 Identities=25% Similarity=0.369 Sum_probs=80.2
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeeeCCC
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA------VIGRTFVISNSE 111 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~------~~~rT~vi~~t~ 111 (546)
-.+.+|.|.|+-|+++-+.|. +|.|||||+|.+... ...||+|+.+|+
T Consensus 944 ~n~q~L~veVlhA~diipLD~--------------------------NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtL 997 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDS--------------------------NGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTL 997 (1103)
T ss_pred ccccchhhhhhccccccccCC--------------------------CCCCCCeEEEEeccccccccchhhhhhhhhccc
Confidence 367889999999999887775 788999999999753 344999999999
Q ss_pred CCeEeeEEEEeecCC-----CceEEEEEEecCCcC-CeeeEeEEEeceecc
Q 009008 112 SPVWMQHFNVPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC 156 (546)
Q Consensus 112 nP~WNE~F~~~v~~~-----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~ 156 (546)
||+|+|+|+|.|+.. ...|.|+|+|+|.+. +||-|++.+.|.++.
T Consensus 998 nPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 998 NPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 999999999998643 356899999999887 899999999998876
No 137
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.63 E-value=1.4e-07 Score=101.81 Aligned_cols=137 Identities=23% Similarity=0.292 Sum_probs=98.2
Q ss_pred HHHHHHHHhccceEEEEE-EeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcHH
Q 009008 253 QDVYDAINQARRLIYITG-WSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEE 331 (546)
Q Consensus 253 ~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~ 331 (546)
..++.+|.+|+++|+|+. | ++++ ..+.++|+.++++||+|+|++ +..+..... ........
T Consensus 273 ~~~~~~i~~A~~~i~i~~pY-------f~~~----~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~------~~~~~~~~ 334 (438)
T COG1502 273 RLLLKAINSARESILIATPY-------FVPD----RELLAALKAAARRGVDVRIII-PSLGANDSA------IVHAAYRA 334 (438)
T ss_pred HHHHHHHHhhceEEEEEcCC-------cCCC----HHHHHHHHHHHhcCCEEEEEe-CCCCCCChH------HHHHHHHH
Confidence 689999999999999998 6 5555 788899999999999999997 633211110 00011123
Q ss_pred HHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCccccc
Q 009008 332 TRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTL 411 (546)
Q Consensus 332 ~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~ 411 (546)
....+.+.|+++..++.. ...|.|++|||+ .+++||+.|++..-+..
T Consensus 335 ~~~~l~~~gv~i~~~~~g----------------~~lH~K~~iiD~--------~~~~vGS~N~~~rS~~l--------- 381 (438)
T COG1502 335 YLKELLEAGVKVYEYPGG----------------AFLHSKVMIIDD--------RTVLVGSANLDPRSLRL--------- 381 (438)
T ss_pred HHHHHHHhCCEEEEecCC----------------CcceeeEEEEcC--------CEEEEeCCcCCHhHHHH---------
Confidence 455567889988766431 246999999999 79999999998844321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCeeeccccccCh-HHHHHHHHHHHHHhhccC
Q 009008 412 ETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEERWLKASK 464 (546)
Q Consensus 412 ~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gp-aa~dl~~~F~~rW~~~~~ 464 (546)
+ -.+.+.|+.| .+.++...|...|.....
T Consensus 382 N------------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~~ 411 (438)
T COG1502 382 N------------------------FEVGLVIEDPELALKLRREFEADLARSKR 411 (438)
T ss_pred h------------------------hhheeEEeCHHHHHHHHHHHHHHHHHHhh
Confidence 0 1446667776 799999999977765433
No 138
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=98.60 E-value=4.4e-07 Score=101.75 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=103.1
Q ss_pred hHHHHHHHHHhccc-----eEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCcc
Q 009008 251 CWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~ 325 (546)
-|+.+.+.|++|.+ +|.|+.|.+ .. ...|.++|.+||++|++|++|| +-...+.
T Consensus 340 Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~-------~~---~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd---------- 398 (672)
T TIGR03705 340 SFDPVVEFLRQAAEDPDVLAIKQTLYRT-------SK---DSPIIDALIEAAENGKEVTVVV-ELKARFD---------- 398 (672)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEEEEe-------cC---CcHHHHHHHHHHHcCCEEEEEE-Eehhhcc----------
Confidence 58889999999997 899999943 22 2799999999999999999998 6221110
Q ss_pred CCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCC
Q 009008 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (546)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H 405 (546)
...+.++.+.|+++|++|..-- ..+..|+|+++||.... .+-+..+++|.-|....
T Consensus 399 e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~-~~~~~y~~igTgN~n~~------- 454 (672)
T TIGR03705 399 EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREG-GELRRYVHLGTGNYHPK------- 454 (672)
T ss_pred chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeC-CceEEEEEecCCCCCCc-------
Confidence 0123456678999999998621 12478999999997421 12234677776665442
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCeeecccc-ccChHHHHHHHHHHHHHhhc
Q 009008 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCR-IDGPAAYDILTNFEERWLKA 462 (546)
Q Consensus 406 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~-i~Gpaa~dl~~~F~~rW~~~ 462 (546)
....|+|+++. ..+..+.|+...|..-|...
T Consensus 455 --------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~ 486 (672)
T TIGR03705 455 --------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYS 486 (672)
T ss_pred --------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCC
Confidence 12468999988 78889999999999988743
No 139
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.59 E-value=1.4e-08 Score=109.86 Aligned_cols=122 Identities=24% Similarity=0.399 Sum_probs=91.6
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------------------------
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------------------------ 98 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~------------------------ 98 (546)
|.|.+.+|++|-+.|. +|-||||+.+.+-.
T Consensus 116 l~is~~~ak~l~akd~--------------------------ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~ 169 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDV--------------------------NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQD 169 (1103)
T ss_pred HHHHHHHhcCccccCC--------------------------CCCCChhhhhccccccccccChhhhhhhhhhhhhcccc
Confidence 6678889999987775 56678887776620
Q ss_pred ------EEEeeeeeeeCCCCCeEeeEEEEeecCCC-ceEEEEEEecCCc-------------------------------
Q 009008 99 ------AVIGRTFVISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDFV------------------------------- 140 (546)
Q Consensus 99 ------~~~~rT~vi~~t~nP~WNE~F~~~v~~~~-~~l~~~V~D~d~~------------------------------- 140 (546)
+.+.-|.|.++|+||+|||.|.|.+.+-. ..+.+.+||+|--
T Consensus 170 ~GpiPAKlIkatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSAR 249 (1103)
T KOG1328|consen 170 TGPIPAKLIKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSAR 249 (1103)
T ss_pred CCCCcHHHhhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHh
Confidence 11224778888999999999999998754 6788999997720
Q ss_pred --C----CeeeEeEEEeceeccCCCeeeeccccccCCCCcccCCceEEEEEEeecccc
Q 009008 141 --G----SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVEN 192 (546)
Q Consensus 141 --~----~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~~ 192 (546)
+ |||||.+.|||.++.. ...++||.|...+.++ +-.|.+++.+......+
T Consensus 250 ans~d~tDDFLGciNipl~EiP~-~Gld~WFkLepRS~~S-~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 250 ANSDDCTDDFLGCINIPLAEIPP-DGLDQWFKLEPRSDKS-KVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCCccccccccccccchhcCCc-chHHHHhccCcccccc-cccceEEEEEEEeeecc
Confidence 1 6799999999999874 4578999998665554 34578888888765443
No 140
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.12 E-value=9.2e-06 Score=87.81 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCC-
Q 009008 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTN- 328 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~- 328 (546)
.....+.++|.+|+++|+|++= |+..+ ..+.++|+.++++||+|+||+ -+..+..+..-.........
T Consensus 251 ~l~~~~~~li~~A~~~i~I~TP------YF~p~----~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy~~~d~~~~~~~~ 319 (451)
T PRK09428 251 LLNKTIFHLMASAEQKLTICTP------YFNLP----AILVRNIIRLLRRGKKVEIIV-GDKTANDFYIPPDEPFKIIGA 319 (451)
T ss_pred HHHHHHHHHHhccCcEEEEEeC------CcCCC----HHHHHHHHHHHhcCCcEEEEc-CCcccccCcCCCccHHHHhhh
Confidence 3577888999999999999853 45544 789999999999999999998 44433221100000000000
Q ss_pred cHHHHH-----------hhcCCC---cEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEcccc
Q 009008 329 DEETRR-----------FFKHSS---VQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLD 394 (546)
Q Consensus 329 ~~~~~~-----------~l~~~g---v~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~n 394 (546)
-+...+ .+-++| |++..++ .++.|.|.++||+ ..++|||.|
T Consensus 320 ~py~ye~~lr~f~~~~~~li~~G~l~v~i~~~~-----------------~~~~HaK~i~vD~--------~~~~iGS~N 374 (451)
T PRK09428 320 LPYLYEINLRRFAKRLQYYIDNGQLNVRLWKDG-----------------DNSYHLKGIWVDD--------RWMLLTGNN 374 (451)
T ss_pred hHHHHHHhhhhhHHHhhhhhhcCcceEEEEecC-----------------CCcceEEEEEEeC--------CEEEEcCCC
Confidence 011111 122344 5544432 2357999999999 699999999
Q ss_pred ccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHHHHHHHhh
Q 009008 395 LCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLK 461 (546)
Q Consensus 395 l~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~~rW~~ 461 (546)
+...-|.- + ..+.+.|..|. ..|.+.|.+....
T Consensus 375 ld~RS~~l---------n------------------------~E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 375 LNPRAWRL---------D------------------------LENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred CChhHhhh---------c------------------------ccceEEEECCh-HHHHHHHHHHHHH
Confidence 98855531 0 13456666666 7778888877754
No 141
>PF13918 PLDc_3: PLD-like domain
Probab=98.05 E-value=1.7e-05 Score=74.33 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhh-cCCCeEEEEE
Q 009008 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS-QEGVRVLILA 307 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka-~rGV~VriLv 307 (546)
-.++|+..|++|+++|||+...+.|.+..-.+...+..|.++|++|| +|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 48999999999999999999998887655444456789999999886 8999999998
No 142
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.04 E-value=7.6e-06 Score=89.26 Aligned_cols=105 Identities=20% Similarity=0.322 Sum_probs=78.1
Q ss_pred CCCCCcEEEEEECCE---EEeeeeeeeCCCCCeEeeEEEEeecCC----------------CceEEEEEEe-cCCcC-Ce
Q 009008 85 KITSDPYVTVSICGA---VIGRTFVISNSESPVWMQHFNVPVAHS----------------AAEVHFVVKD-NDFVG-SQ 143 (546)
Q Consensus 85 ~g~~DPYv~v~l~~~---~~~rT~vi~~t~nP~WNE~F~~~v~~~----------------~~~l~~~V~D-~d~~~-~d 143 (546)
++.+||||+|...+. ...+|+++++|.||.|||.|+|.+... ...|.+++|+ ++.+. ++
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 456999999999642 124899999999999999999987543 2456778887 44444 88
Q ss_pred eeEeEEEeceeccCCCeeeeccccccC-CCCcc---cCCceEEEEEEeec
Q 009008 144 IMGAVGIPVEKLCSGDKIEGAFPILNS-SRKPC---KAGAVLSLSIQYTP 189 (546)
Q Consensus 144 ~IG~~~i~l~~l~~g~~~~~W~~L~~~-~g~~~---k~~g~I~l~l~f~P 189 (546)
|+|++.+|+..+......+.||-|... +|... ..-|.+++.+.|+.
T Consensus 228 FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999999999988766667899999753 23211 12367888888874
No 143
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.03 E-value=4.6e-06 Score=94.90 Aligned_cols=109 Identities=23% Similarity=0.278 Sum_probs=85.1
Q ss_pred ceEEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeC
Q 009008 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISN 109 (546)
Q Consensus 34 ~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~ 109 (546)
+.+-+..|+|.|.|.-|++|+-.. .+..+||||+.+|-. +..-||+|+++
T Consensus 1517 LsIsY~~~~LtImV~H~K~L~~Lq--------------------------dg~~P~pyVK~YLlPdp~k~sKRKTKvvrk 1570 (1639)
T KOG0905|consen 1517 LSISYNNGTLTIMVMHAKGLALLQ--------------------------DGQDPDPYVKTYLLPDPRKTSKRKTKVVRK 1570 (1639)
T ss_pred EEEEEcCceEEEEhhhhccccccc--------------------------CCCCCCcceeEEecCCchHhhhhhhccccc
Confidence 344578999999999999995111 134589999999942 33349999999
Q ss_pred CCCCeEeeEEEEe---ecCC-CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 110 SESPVWMQHFNVP---VAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 110 t~nP~WNE~F~~~---v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
|.||.|||..... .... .+.|.++|+..+.+. +.++|.+.|||.++.-.++..+||+|-
T Consensus 1571 t~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1571 TRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred cCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 9999999987654 3222 378999999888766 789999999999988766667999983
No 144
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.93 E-value=1.9e-05 Score=69.65 Aligned_cols=80 Identities=28% Similarity=0.471 Sum_probs=63.4
Q ss_pred CCcEEEEEE---CCEEEeeeeeeeCCCCCeEeeEEEEeec--------C--------CCceEEEEEEecCCc--------
Q 009008 88 SDPYVTVSI---CGAVIGRTFVISNSESPVWMQHFNVPVA--------H--------SAAEVHFVVKDNDFV-------- 140 (546)
Q Consensus 88 ~DPYv~v~l---~~~~~~rT~vi~~t~nP~WNE~F~~~v~--------~--------~~~~l~~~V~D~d~~-------- 140 (546)
.++||+|.+ .+.+.-+|+++-++-.|.||-.|+|+|+ + ...++.|+||+...-
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 799999997 3444449999999999999999999977 2 125789999985532
Q ss_pred ---CCeeeEeEEEeceeccC-CCeeeecccc
Q 009008 141 ---GSQIMGAVGIPVEKLCS-GDKIEGAFPI 167 (546)
Q Consensus 141 ---~~d~IG~~~i~l~~l~~-g~~~~~W~~L 167 (546)
+|-+||.+.||+.+|.. ...+.+||++
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 24499999999999885 4568899985
No 145
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.90 E-value=5.9e-06 Score=93.04 Aligned_cols=87 Identities=24% Similarity=0.322 Sum_probs=75.4
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEe-eeeeeeCCCCCeEeeEE
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIG-RTFVISNSESPVWMQHF 119 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~-rT~vi~~t~nP~WNE~F 119 (546)
-.++|.|++|-+|...|. +|.+||||+|.++++... ++..+.+++||++++.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~--------------------------ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmf 666 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDG--------------------------NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMF 666 (1105)
T ss_pred eeEEEEEEEeeeccccCC--------------------------CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHH
Confidence 357899999999987775 788999999999988754 67789999999999999
Q ss_pred EEeecCC-CceEEEEEEecCCcC-CeeeEeEEEece
Q 009008 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVE 153 (546)
Q Consensus 120 ~~~v~~~-~~~l~~~V~D~d~~~-~d~IG~~~i~l~ 153 (546)
.+.+.-+ ...+.+.|||+|.++ ++.||+..|.|+
T Consensus 667 el~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 667 ELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred HhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 8887655 467899999999998 899999999986
No 146
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=4.7e-06 Score=83.86 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=89.9
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCeEe
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~WN 116 (546)
..|+.+|..|+.|..|++ .+..|||++..+.. ....+|++..|++||.||
T Consensus 93 ~~~~~tl~~a~~lk~~~~--------------------------~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~ 146 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDI--------------------------NGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWN 146 (362)
T ss_pred hhcceeechhcccchhhh--------------------------hhhcchHHhhhcccchhhhhhhhHHhhccCcCccee
Confidence 458899999999999987 56689999999953 222389999999999999
Q ss_pred eEEE--EeecCC--CceEEEEEEecCCcC-CeeeEeEEEeceeccCCC--eeeeccccccCCCC---c-ccCCceEEEEE
Q 009008 117 QHFN--VPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD--KIEGAFPILNSSRK---P-CKAGAVLSLSI 185 (546)
Q Consensus 117 E~F~--~~v~~~--~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~--~~~~W~~L~~~~g~---~-~k~~g~I~l~l 185 (546)
|+-. +...+. ...+++.|+|++.+. ++++|+..+++..|.+.+ ....|+.-..+.++ . ....+.|.+++
T Consensus 147 etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl 226 (362)
T KOG1013|consen 147 ETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISL 226 (362)
T ss_pred ccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeee
Confidence 9643 333333 256788899999887 789999999998887543 33345443222111 1 23457889999
Q ss_pred Eeecccc
Q 009008 186 QYTPVEN 192 (546)
Q Consensus 186 ~f~P~~~ 192 (546)
.|.....
T Consensus 227 ~~~s~~~ 233 (362)
T KOG1013|consen 227 AYSSTTP 233 (362)
T ss_pred ccCcCCC
Confidence 8865443
No 147
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=2e-05 Score=79.47 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=76.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~rT~vi~~t~nP~ 114 (546)
...-|.|+|+.+.+|..+|. +|-+||||.+.+.. ....+|.+.+++.||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDs--------------------------ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~ 284 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDS--------------------------NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPE 284 (362)
T ss_pred CCCceEEEEEEeeeeecccc--------------------------CCCCCccceeecCCCcchhhcccCcchhccCCcc
Confidence 44668999999999998886 67799999999942 3344899999999999
Q ss_pred EeeEEEEeecCC---CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeecccc
Q 009008 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (546)
Q Consensus 115 WNE~F~~~v~~~---~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L 167 (546)
+|+.|.+.+.+. ...+.|.|+|++.-+ .+++|-...... ..+....+|+.-
T Consensus 285 fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 285 FDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGRC 339 (362)
T ss_pred ccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc--ccchhhcCcccc
Confidence 999999887654 367899999988764 778887544332 234444555443
No 148
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.70 E-value=2.4e-05 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.5
Q ss_pred cccccceEEEccCcccccceEEEEEccccccCc
Q 009008 366 YTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKG 398 (546)
Q Consensus 366 ~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~ 398 (546)
.++|+|++|||+ ..+|+||.|++..
T Consensus 3 ~~~H~K~~v~D~--------~~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDD--------EIAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcC--------CEEEEeCccCCCC
Confidence 468999999999 7999999999874
No 149
>PLN02964 phosphatidylserine decarboxylase
Probab=97.69 E-value=3.3e-05 Score=86.22 Aligned_cols=102 Identities=15% Similarity=0.257 Sum_probs=77.1
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeE
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~ 118 (546)
..|.+.++|++|+ |+. .|||..+-.-+.++.||.+.++|+||+|||.
T Consensus 52 ~~~~~~~~~~~~~----~~~-----------------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~ 98 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF-----------------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSE 98 (644)
T ss_pred ccCeEEEEeehhh----hcc-----------------------------CCcEEEEEEecceeeeeccccccCCcccchh
Confidence 4588999999987 543 5887655554455559999999999999998
Q ss_pred EEEeecCCC-ceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeee--eccccccCCCC
Q 009008 119 FNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIE--GAFPILNSSRK 173 (546)
Q Consensus 119 F~~~v~~~~-~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~--~W~~L~~~~g~ 173 (546)
..|.+.... ....|.|+|.+.++ ++++|.+.+++.++...+..+ .-|.+.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 99 KKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred hceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 888775443 45699999999988 889999999998887554322 23677777653
No 150
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.60 E-value=0.00083 Score=67.59 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=97.4
Q ss_pred ccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhh
Q 009008 217 RRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIK 296 (546)
Q Consensus 217 ~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~k 296 (546)
++-.+|++|...+. ...|. +=+.+-+.|.+|++-|-|.+= ++.|. .-|.|+|.++
T Consensus 116 ~g~Tr~~vy~qPp~--~~~p~-------------IKE~vR~~I~~A~kVIAIVMD-------~FTD~---dIf~DLleAa 170 (284)
T PF07894_consen 116 KGVTRATVYFQPPK--DGQPH-------------IKEVVRRMIQQAQKVIAIVMD-------VFTDV---DIFCDLLEAA 170 (284)
T ss_pred cCCceEEEEeCCCC--CCCCC-------------HHHHHHHHHHHhcceeEEEee-------ccccH---HHHHHHHHHH
Confidence 34478999986643 11122 467788899999999999876 55552 4556666666
Q ss_pred hcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEc
Q 009008 297 SQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVD 376 (546)
Q Consensus 297 a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID 376 (546)
.+|||-|+||+ |..+...++.. ..-+..+ ...++ +++|+... | ..|.......+-+.-++|+++||
T Consensus 171 ~kR~VpVYiLL-D~~~~~~Fl~M--c~~~~v~----~~~~~--nmrVRsv~---G--~~y~~rsg~k~~G~~~eKF~lvD 236 (284)
T PF07894_consen 171 NKRGVPVYILL-DEQNLPHFLEM--CEKLGVN----LQHLK--NMRVRSVT---G--CTYYSRSGKKFKGQLKEKFMLVD 236 (284)
T ss_pred HhcCCcEEEEe-chhcChHHHHH--HHHCCCC----hhhcC--CeEEEEec---C--CeeecCCCCeeeCcccceeEEEe
Confidence 69999999998 88765422100 0000000 11122 23333211 1 11111111234568899999999
Q ss_pred cCcccccceEEEEEccccccCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChHHHHHHHHHH
Q 009008 377 ADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFE 456 (546)
Q Consensus 377 ~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpaa~dl~~~F~ 456 (546)
+ ..+..|+-=+++.- ..-| +-+...+.|.+|......|.
T Consensus 237 ~--------~~V~~GSYSFtWs~--~~~~-------------------------------r~~~~~~tGq~Ve~FD~EFR 275 (284)
T PF07894_consen 237 G--------DKVISGSYSFTWSS--SRVH-------------------------------RNLVTVLTGQIVESFDEEFR 275 (284)
T ss_pred c--------ccccccccceeecc--cccc-------------------------------cceeEEEeccccchHhHHHH
Confidence 9 68888886555421 1111 23567789999999998887
Q ss_pred HHHh
Q 009008 457 ERWL 460 (546)
Q Consensus 457 ~rW~ 460 (546)
.-..
T Consensus 276 ~LyA 279 (284)
T PF07894_consen 276 ELYA 279 (284)
T ss_pred HHHH
Confidence 6543
No 151
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00016 Score=78.20 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=80.6
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC------CEEEeeeeeeeCCCCCeE
Q 009008 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC------GAVIGRTFVISNSESPVW 115 (546)
Q Consensus 42 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~------~~~~~rT~vi~~t~nP~W 115 (546)
.+.|+|+.|.+|+=.. +|.-.|||.|.+- +++...|+...|+-.|.+
T Consensus 1126 kvtvkvvaandlkwqt---------------------------sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKy 1178 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT---------------------------SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKY 1178 (1283)
T ss_pred eEEEEEEecccccchh---------------------------ccccccceEEEEecCcccchhhhccccccCCCcCccc
Confidence 3788899999886221 3456899999983 355557888888999999
Q ss_pred eeEEEEeecCC----CceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeeccccc
Q 009008 116 MQHFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (546)
Q Consensus 116 NE~F~~~v~~~----~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~ 168 (546)
||+|+|.+... ..+|.|.|+|+..-. |.++|.+.++|+++........|++|.
T Consensus 1179 NEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1179 NETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 99999997643 367999999988666 779999999999999877778899994
No 152
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=97.54 E-value=0.0061 Score=64.02 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhccceEEEEEEeec---ceeeEEeCC-CCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccC
Q 009008 251 CWQDVYDAINQARRLIYITGWSVY---HTVRLVRDG-SNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMS 326 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~~I~I~~w~~~---~~~~l~~~~-~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~ 326 (546)
+.++-++.|++|+++++|+.|--+ .++++.... ..+..+...|..++.+||.|||.. +..... .+
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~-~~--------- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGG-PP--------- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEe-ecCCCC-CC---------
Confidence 578999999999999999876332 111111111 135889999999999999999986 333211 11
Q ss_pred CCcHHHHHhhcCCC-cEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCC
Q 009008 327 TNDEETRRFFKHSS-VQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (546)
Q Consensus 327 ~~~~~~~~~l~~~g-v~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H 405 (546)
+.+ ...|...| +++.-.... .| ..-.-.|-|+.|||+ ..-|+||.|+...-. |
T Consensus 142 --~~d-~~~Le~~Gaa~vr~id~~-----~l------~g~GvlHtKf~vvD~--------khfylGSaNfDWrSl-T--- 195 (456)
T KOG3603|consen 142 --NAD-LQVLESLGLAQVRSIDMN-----RL------TGGGVLHTKFWVVDI--------KHFYLGSANFDWRSL-T--- 195 (456)
T ss_pred --ccc-HHHHHhCCCceEEeeccc-----cc------ccCceEEEEEEEEec--------ceEEEeccccchhhc-c---
Confidence 122 23355666 665543211 11 012457999999999 799999999987322 1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccC-h-HHHHHHHHHHHHHhhc
Q 009008 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDG-P-AAYDILTNFEERWLKA 462 (546)
Q Consensus 406 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~G-p-aa~dl~~~F~~rW~~~ 462 (546)
.-..+++.++- | .|.||...|++.|..-
T Consensus 196 -----------------------------qvkElGv~v~NCpclakDL~kiFe~yW~lg 225 (456)
T KOG3603|consen 196 -----------------------------QVKELGVVVRNCPCLAKDLKKIFERYWYLG 225 (456)
T ss_pred -----------------------------ceeEeeeEEecChhHHHHHHHHHHHHhcCC
Confidence 11233333332 3 6999999999999964
No 153
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0002 Score=73.51 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=83.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEe--eeeeeeCCCCCe
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIG--RTFVISNSESPV 114 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~~~--rT~vi~~t~nP~ 114 (546)
-.|.|+|.|++|++|-..... +..++|||+|++- +.++. +|+...++++|-
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~-------------------------k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~pl 321 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGS-------------------------KSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPL 321 (405)
T ss_pred ccCceeEEEEecccccccCCc-------------------------ccccCceeEEEEcCCCceecccccccccccCchh
Confidence 348999999999999644321 2258999999993 33332 888888999888
Q ss_pred EeeEEEEeecCCCceEEEEEE-ecCCcC-CeeeEeEEEeceeccCCC-eeeeccccccCC
Q 009008 115 WMQHFNVPVAHSAAEVHFVVK-DNDFVG-SQIMGAVGIPVEKLCSGD-KIEGAFPILNSS 171 (546)
Q Consensus 115 WNE~F~~~v~~~~~~l~~~V~-D~d~~~-~d~IG~~~i~l~~l~~g~-~~~~W~~L~~~~ 171 (546)
+-+...|.-..+...|.++|| |+..+. +.|+|.+.|-+.+|--+. ....||+|....
T Consensus 322 yqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 322 YQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred hhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 888888877777788999998 444554 679999999999988655 678999997543
No 154
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.18 E-value=8.2e-05 Score=84.13 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=75.5
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEE
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F 119 (546)
|-.|++.|++|+.|..+|. .+.+|||+.|.+.++.. .|.++.+|+||.||++.
T Consensus 205 ~~~lR~yiyQar~L~a~dk--------------------------~~~sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~ 257 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDK--------------------------DDESDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTI 257 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCc--------------------------ccCCCchhhhhcccccc-eeEeecCcCCCCcccee
Confidence 4446666777777766654 56699999999998888 99999999999999987
Q ss_pred EEeec------C----CCceEEEEEEecCCcC-CeeeEeEEEeceeccCCCeeeecccccc
Q 009008 120 NVPVA------H----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (546)
Q Consensus 120 ~~~v~------~----~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~g~~~~~W~~L~~ 169 (546)
.|.-. + .-..+.|+|+|.+..+ ++++|+......-... ...-.|+++..
T Consensus 258 ~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 258 IFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred eccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 76521 1 1246789999999888 8899998765443332 33456888764
No 155
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.12 E-value=0.0026 Score=71.94 Aligned_cols=144 Identities=18% Similarity=0.127 Sum_probs=88.5
Q ss_pred ecCCccccchhhHHHHHHHHHhccc----eEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCcccc
Q 009008 240 LDGGVQFNHESCWQDVYDAINQARR----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRS 315 (546)
Q Consensus 240 l~~g~~y~~~~~f~~l~~aI~~Ak~----~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~ 315 (546)
|..|+......+.+.+..+|..||+ +|+|.+-.+ .| ..|.++|..|+++||+|+++| .++-+.
T Consensus 494 l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l-------~D----~~ii~aL~~As~aGV~V~Liv-RGiCcL- 560 (672)
T TIGR03705 494 LLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNSL-------VD----PDLIDALYEASQAGVKIDLIV-RGICCL- 560 (672)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC-------CC----HHHHHHHHHHHHCCCeEEEEE-eccccc-
Confidence 3344444444456667778889998 999987632 23 799999999999999999998 544321
Q ss_pred ccCCcccCccCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccc
Q 009008 316 ILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDL 395 (546)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl 395 (546)
.+|. -. ...++.+.- -++-... |-|+....+. ....+|+|+.|+
T Consensus 561 ~pgi-----pg----------~sd~i~v~s---------------iv~r~Le-h~rIy~f~~~-----~d~~~~igSAn~ 604 (672)
T TIGR03705 561 RPGV-----PG----------LSENIRVRS---------------IVGRFLE-HSRIYYFGNG-----GEEKVYISSADW 604 (672)
T ss_pred CCCC-----CC----------CCCCEEEEE---------------EhhHhhC-cCEEEEEeCC-----CCcEEEEECCCC
Confidence 1110 00 011122210 0111223 7888877531 126999999998
Q ss_pred cCcccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChH-HHHHHH-HHHHHHhhccCC
Q 009008 396 CKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILT-NFEERWLKASKP 465 (546)
Q Consensus 396 ~~~r~d~~~H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpa-a~dl~~-~F~~rW~~~~~~ 465 (546)
...-++ --..+.+.|..|. +..+.. .+.-.|++..+.
T Consensus 605 m~Rnl~---------------------------------~r~E~~~~i~d~~~~~~l~~~il~~~l~Dn~ka 643 (672)
T TIGR03705 605 MTRNLD---------------------------------RRVEVLFPIEDPTLKQRVLDEILEAYLADNVKA 643 (672)
T ss_pred CCCccc---------------------------------ceEEEEEEEcCHHHHHHHHHHHHHHhCccccce
Confidence 763322 1147788888886 555556 788888876553
No 156
>PRK05443 polyphosphate kinase; Provisional
Probab=97.09 E-value=0.0028 Score=71.96 Aligned_cols=135 Identities=19% Similarity=0.165 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHhccc----eEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCc
Q 009008 249 ESCWQDVYDAINQARR----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGI 324 (546)
Q Consensus 249 ~~~f~~l~~aI~~Ak~----~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~ 324 (546)
..+.+.+..+|.+||+ +|+|..-.+ .| ..+.++|..|+++||+|+||| .+.-+. .+|.
T Consensus 512 ~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l-------~d----~~ii~aL~~As~~GV~V~liV-RGiC~l-~pgi----- 573 (691)
T PRK05443 512 ERLLELIDREIANARAGKPARIIAKMNSL-------VD----PQIIDALYEASQAGVKIDLIV-RGICCL-RPGV----- 573 (691)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCC-------CC----HHHHHHHHHHHHCCCeEEEEE-eccccc-CCCC-----
Confidence 3356667778889998 999987632 23 799999999999999999998 544322 1110
Q ss_pred cCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCC
Q 009008 325 MSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPA 404 (546)
Q Consensus 325 ~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~ 404 (546)
-. ...++.|. ++ .+-... |-|+....+. ....+|+|+.|+...-++
T Consensus 574 pg----------~sd~i~v~----------s~-----v~r~Le-h~rIy~f~~g-----d~~~~~iGSAn~d~Rsl~--- 619 (691)
T PRK05443 574 PG----------LSENIRVR----------SI-----VGRFLE-HSRIYYFGNG-----GDEEVYISSADWMPRNLD--- 619 (691)
T ss_pred CC----------CCCCEEEH----------HH-----HHHHHh-cCEEEEEeCC-----CCcEEEEECCCCCccccc---
Confidence 00 00001110 00 011112 5577666431 116999999998763332
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChH-HHHHHHHHHHHHhhccCC
Q 009008 405 HPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLKASKP 465 (546)
Q Consensus 405 H~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpa-a~dl~~~F~~rW~~~~~~ 465 (546)
-=..+.+-|..|. +..+...|...|....+.
T Consensus 620 ------------------------------~r~Ev~~~i~d~~~~~~l~~~~~~~l~dn~ka 651 (691)
T PRK05443 620 ------------------------------RRVEVLFPILDPRLKQRLLEILEIQLADNVKA 651 (691)
T ss_pred ------------------------------ceEEEeEEEeCHHHHHHHHHHHHHHHhhhhhe
Confidence 1147788888775 777888899999876663
No 157
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.85 E-value=0.0035 Score=70.45 Aligned_cols=102 Identities=25% Similarity=0.361 Sum_probs=76.0
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeee-CC
Q 009008 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------AVIGRTFVIS-NS 110 (546)
Q Consensus 38 ~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~------~~~~rT~vi~-~t 110 (546)
..-++|.|+|++++-|..++. .-||.|.+-+ .+..||+++. |+
T Consensus 700 vIA~t~sV~VISgqFLSdrkv------------------------------gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~ 749 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRKV------------------------------GTYVEVDMFGLPTDTIRKEFRTRTVQGNS 749 (1189)
T ss_pred eEEeeEEEEEEeeeecccccc------------------------------CceEEEEecCCCchhhhhhhhhccccCCC
Confidence 356899999999999986653 3699999833 1233888866 48
Q ss_pred CCCeEee-EEEEe--ecCCCceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeeccccccCCCCcc
Q 009008 111 ESPVWMQ-HFNVP--VAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (546)
Q Consensus 111 ~nP~WNE-~F~~~--v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~g~~~ 175 (546)
.||+||| .|.|. +-.....|+|.|++. +..+||+-.+|+..|..|. +.+-|.+..++|.
T Consensus 750 ~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl 811 (1189)
T KOG1265|consen 750 FNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPL 811 (1189)
T ss_pred CCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCCCCcc
Confidence 9999999 47766 333347899999985 3579999999999999886 3456655555553
No 158
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.84 E-value=0.00099 Score=54.98 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=67.2
Q ss_pred EEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEE--EEECCEEEeeeeeeeCCCCCeEeeEEEE
Q 009008 44 DIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVT--VSICGAVIGRTFVISNSESPVWMQHFNV 121 (546)
Q Consensus 44 ~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~--v~l~~~~~~rT~vi~~t~nP~WNE~F~~ 121 (546)
-+|+..+++|.-.... +....-|++ +.+.+....||.+.+.+.||+++|+|.|
T Consensus 2 witv~~c~d~s~~~~~-------------------------~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVF 56 (103)
T cd08684 2 WITVLKCKDLSWPSSC-------------------------GENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVF 56 (103)
T ss_pred EEEEEEeccccccccc-------------------------CcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHH
Confidence 4789999998643321 112334554 4445655669999999999999999999
Q ss_pred eecCC---CceEEEEEEecCCcCCeeeEeEEEeceeccCCCeeeecccc
Q 009008 122 PVAHS---AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPI 167 (546)
Q Consensus 122 ~v~~~---~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~g~~~~~W~~L 167 (546)
.+... ...|.|.|+. ..-....||.+.+.++++- .++.++|.++
T Consensus 57 qi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~ 103 (103)
T cd08684 57 AIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHWLEI 103 (103)
T ss_pred HHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence 87542 3567788877 2223789999999998764 3456677653
No 159
>PLN02352 phospholipase D epsilon
Probab=96.51 E-value=0.0066 Score=68.80 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=51.7
Q ss_pred ccCceEEEeeccccCC-CCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCC-------CCchH
Q 009008 217 RRGGKVTLYQDAHAHD-GCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDG-------SNTLM 288 (546)
Q Consensus 217 ~~g~~v~l~~dg~~~~-~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~-------~~~~~ 288 (546)
...+.|+++.+-.... +..|. |. -...+...+.++||++||++|||+.=-|-...+.+..+ ..+..
T Consensus 425 ~~~w~VQv~RSid~~sa~~~P~-----~~-~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~e 498 (758)
T PLN02352 425 NRNWKVQVYRSIDHVSASHMPR-----NL-PVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIE 498 (758)
T ss_pred CCcccceEEEecCccccccCCC-----CC-chhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHH
Confidence 3557888888754321 11221 11 12345799999999999999999853222222222221 12357
Q ss_pred HHHHHHhhh--cCCCeEEEEEe
Q 009008 289 LGDLLKIKS--QEGVRVLILAW 308 (546)
Q Consensus 289 l~~~L~~ka--~rGV~VriLvw 308 (546)
|.+.|.+|. .++-+|.|++-
T Consensus 499 Ia~kI~~kir~~e~f~V~IViP 520 (758)
T PLN02352 499 IALKIASKIRAKERFAVYILIP 520 (758)
T ss_pred HHHHHHHHHhCCCCCEEEEEEC
Confidence 777777774 45688888873
No 160
>PLN02866 phospholipase D
Probab=96.44 E-value=0.015 Score=67.67 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCcccCceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeC----CCCchHH
Q 009008 214 FPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRD----GSNTLML 289 (546)
Q Consensus 214 ~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~----~~~~~~l 289 (546)
.+.+..|++|++.+.-.+. .|.......+.++.+++|++|+|+|||+.=. ++.. ......|
T Consensus 704 ~~~~~~c~~QivRS~~~WS---------~G~~~~E~SI~~AYi~~I~~A~hfIYIENQF------Fis~~~~~~~i~N~I 768 (1068)
T PLN02866 704 VGPRVSCRCQVIRSVSQWS---------AGTSQVEESIHAAYCSLIEKAEHFIYIENQF------FISGLSGDDTIQNRV 768 (1068)
T ss_pred cCCCCeEEEEEEeeccccc---------CCCCchHHHHHHHHHHHHHhcccEEEEeccc------ccccccccccccchH
Confidence 4567789999999887653 3433335568999999999999999998631 2221 1122455
Q ss_pred HHHHH----hhhcCC--CeEEEEE
Q 009008 290 GDLLK----IKSQEG--VRVLILA 307 (546)
Q Consensus 290 ~~~L~----~ka~rG--V~VriLv 307 (546)
.++|. +|+++| -+|.|++
T Consensus 769 ~~AL~~RI~rA~~~~~~frviIVi 792 (1068)
T PLN02866 769 LEALYRRILRAHKEKKCFRVIIVI 792 (1068)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 55555 776666 5555555
No 161
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.079 Score=50.08 Aligned_cols=139 Identities=19% Similarity=0.306 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCc
Q 009008 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (546)
....++...|+.|.+...+..+ |-.++ -.-+.+.|..+.++||++|||- ++..++ .+
T Consensus 39 ~il~~Li~~l~k~~ef~IsVaF-------it~sG--~sll~~~L~d~~~Kgvkgkilt-s~Ylnf-------------Td 95 (198)
T COG3886 39 KILPRLIDELEKADEFEISVAF-------ITESG--LSLLFDLLLDLVNKGVKGKILT-SDYLNF-------------TD 95 (198)
T ss_pred hHHHHHHHHHhcCCeEEEEEEE-------eeCcc--HHHHHHHHHHHhcCCceEEEec-ccccCc-------------cC
Confidence 4789999999999998888776 43332 2567799999999999999995 655432 12
Q ss_pred HHH-HHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCCcc
Q 009008 330 EET-RRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (546)
Q Consensus 330 ~~~-~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~~~ 408 (546)
+.+ ++.+.-.+|+++.+--. ...+|.|-.|.-.+ ..-.|++|+.||+++-.-.
T Consensus 96 P~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~------ 149 (198)
T COG3886 96 PVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV------ 149 (198)
T ss_pred HHHHHHHHhhhccceEEEecC---------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc------
Confidence 222 33333445676654211 12468888876442 2268999999999865421
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCeee-ccccccChHHHHHHHHHHHHHhh
Q 009008 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHD-LHCRIDGPAAYDILTNFEERWLK 461 (546)
Q Consensus 409 ~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD-~~~~i~Gpaa~dl~~~F~~rW~~ 461 (546)
...|-- +...-.|-+|..+...|+..|..
T Consensus 150 ------------------------n~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 150 ------------------------NEEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred ------------------------CHHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 123321 12223588999999999999983
No 162
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.12 E-value=0.035 Score=51.70 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=57.7
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeeeCCCCC
Q 009008 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESP 113 (546)
Q Consensus 39 ~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---rT~vi~~t~nP 113 (546)
+...|.|+|.+|.++.-.+. +|-||++.+ +++.+. .|+.+. ..++
T Consensus 6 ~~~~~~v~i~~~~~~~~~~~-----------------------------~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~ 55 (158)
T cd08398 6 INSNLRIKILCATYVNVNDI-----------------------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNP 55 (158)
T ss_pred CCCCeEEEEEeeccCCCCCc-----------------------------CeEEEEEEEEECCEEccCeeEecccC-CCCC
Confidence 35668999999999864321 578888877 554442 344333 3689
Q ss_pred eEeeEEEEee--cCC--CceEEEEEEecCCcC-----CeeeEeEEEecee
Q 009008 114 VWMQHFNVPV--AHS--AAEVHFVVKDNDFVG-----SQIMGAVGIPVEK 154 (546)
Q Consensus 114 ~WNE~F~~~v--~~~--~~~l~~~V~D~d~~~-----~d~IG~~~i~l~~ 154 (546)
.|||-..|++ .+. ...|.|+||+..... ...||.+.++|=+
T Consensus 56 ~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 56 RWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 9999776664 333 478999999865321 2468888887743
No 163
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.76 E-value=0.0075 Score=62.77 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCcEEEEEEC----CEEEeeeeeeeCCCCCeEeeEEEEeecCC---C---------ceEEEEEEecCCcC--CeeeEeEE
Q 009008 88 SDPYVTVSIC----GAVIGRTFVISNSESPVWMQHFNVPVAHS---A---------AEVHFVVKDNDFVG--SQIMGAVG 149 (546)
Q Consensus 88 ~DPYv~v~l~----~~~~~rT~vi~~t~nP~WNE~F~~~v~~~---~---------~~l~~~V~D~d~~~--~d~IG~~~ 149 (546)
.|-||++.+. .....+|.+++++.+|.+.|.|.+.+... . --+.|+++....+- |.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 4678888773 23344999999999999999999987651 1 24789999877653 67999999
Q ss_pred EeceeccCCCeeeeccccccCCCCcccCCceEEEEEEee
Q 009008 150 IPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (546)
Q Consensus 150 i~l~~l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~ 188 (546)
|.|.-|.....+...++|.+ |+. ..+|.+.++++.+
T Consensus 468 ikle~Len~cei~e~~~l~D--GRK-~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKD--GRK-AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceeccc--ccc-ccCCeeEEEEEEe
Confidence 99998888778888899875 432 2467888888875
No 164
>PLN02270 phospholipase D alpha
Probab=95.71 E-value=0.03 Score=63.86 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=88.6
Q ss_pred cCceEEEeeccccC-CCCCCeE-------EecCCcc-ccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCC-----
Q 009008 218 RGGKVTLYQDAHAH-DGCLADL-------KLDGGVQ-FNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDG----- 283 (546)
Q Consensus 218 ~g~~v~l~~dg~~~-~~~~~~v-------~l~~g~~-y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~----- 283 (546)
..+.|+++.+.... -.-+|.. -+..|.+ ....++..+.+.||++|+++|||+.=-|-....-+..+
T Consensus 458 ~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~ 537 (808)
T PLN02270 458 EVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPE 537 (808)
T ss_pred CccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccc
Confidence 34678888875421 1112221 1222332 23456789999999999999999753222111111100
Q ss_pred ------CCchHHHHHHHhh--hcCCCeEEEEEecCCccccccC------CcccCccCCCcHHHHHhhcCCCcE------E
Q 009008 284 ------SNTLMLGDLLKIK--SQEGVRVLILAWDDPTSRSILG------YKTDGIMSTNDEETRRFFKHSSVQ------V 343 (546)
Q Consensus 284 ------~~~~~l~~~L~~k--a~rGV~VriLvwD~~~s~~~~~------~~~~~~~~~~~~~~~~~l~~~gv~------v 343 (546)
-.+..|...|.+| +.++-+|+|++--..+...-.. +.+...|...-....+.|+++|+. +
T Consensus 538 ~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL 617 (808)
T PLN02270 538 DINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYL 617 (808)
T ss_pred cccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceE
Confidence 1235666667666 5567889988743332211000 000001111123334556666552 1
Q ss_pred E-EccCCC-----CCCccc---------e-eccccccccccccceEEEccCcccccceEEEEEccccccCcccC
Q 009008 344 L-LCPRSA-----GKGHSF---------V-KKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYD 401 (546)
Q Consensus 344 ~-~~p~~~-----~~~~~~---------~-~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d 401 (546)
. +|.++. +...+. . .+...+.+.--|.|++|||+ ..+.||+.||...-++
T Consensus 618 ~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd--------~~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 618 TFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDD--------EYIIIGSANINQRSMD 683 (808)
T ss_pred EEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcC--------CEEEEecccccccccc
Confidence 1 121110 000000 0 00001123457999999999 7999999999986564
No 165
>PLN03008 Phospholipase D delta
Probab=95.70 E-value=0.022 Score=65.13 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=51.5
Q ss_pred ceEEEeeccccCC-CCCCe-------EEecCCccc-cchhhHHHHHHHHHhccceEEEEEEeecceeeEEe---CC----
Q 009008 220 GKVTLYQDAHAHD-GCLAD-------LKLDGGVQF-NHESCWQDVYDAINQARRLIYITGWSVYHTVRLVR---DG---- 283 (546)
Q Consensus 220 ~~v~l~~dg~~~~-~~~~~-------v~l~~g~~y-~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~---~~---- 283 (546)
..|+++.+-.... .-+|. --|..|+.. ...++..+.+++|++|+++|||+.=-|-...+.+. +.
T Consensus 528 w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n 607 (868)
T PLN03008 528 WHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADN 607 (868)
T ss_pred cccceeeecCchhhcCCCCCcchhhhhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccccccccccccccc
Confidence 3577777654421 22232 122233332 23346899999999999999997532222222221 11
Q ss_pred CCchHHHHHHHhh--hcCCCeEEEEEecC
Q 009008 284 SNTLMLGDLLKIK--SQEGVRVLILAWDD 310 (546)
Q Consensus 284 ~~~~~l~~~L~~k--a~rGV~VriLvwD~ 310 (546)
..+..|...|.+| +.++-+|.|++--.
T Consensus 608 ~I~~eia~kI~~ki~~~e~f~V~IViP~~ 636 (868)
T PLN03008 608 LIPMELALKIVSKIRAKERFAVYVVIPLW 636 (868)
T ss_pred chhHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 1235677777776 55678888887433
No 166
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=95.64 E-value=0.033 Score=63.50 Aligned_cols=148 Identities=17% Similarity=0.068 Sum_probs=75.9
Q ss_pred cCCccccchhhHHHHHHHHHhccceEEEEEEeecceeeEEe---CCCC----chHHHHHHHhh--hcCCCeEEEEEecCC
Q 009008 241 DGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVR---DGSN----TLMLGDLLKIK--SQEGVRVLILAWDDP 311 (546)
Q Consensus 241 ~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~---~~~~----~~~l~~~L~~k--a~rGV~VriLvwD~~ 311 (546)
+.|......+.-.+.+++|++|+|+|||+.=.| |-. .+.. +..|.+-+.+| +.+--+|+|++-=.+
T Consensus 557 S~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfF-----i~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~P 631 (887)
T KOG1329|consen 557 SGGINEIEDSIQNAYVKAIRNAEHFIYIENQFF-----IGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWP 631 (887)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEEEeeeeE-----EeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCc
Confidence 345555566678999999999999999975321 211 1112 24444444555 444578888873222
Q ss_pred cccc--ccCCcc--------cCccCCCcHHHHHhhcCCCcEEEEccCCCCCCccc--e---eccccccccccccceEEEc
Q 009008 312 TSRS--ILGYKT--------DGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSF--V---KKQEVGTIYTHHQKTVVVD 376 (546)
Q Consensus 312 ~s~~--~~~~~~--------~~~~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~--~---~~~~~~~~~~~HqK~vVID 376 (546)
|--+ .++... ..-|...-......|++.|+.- ..|........+ + .+...+.+.-=|.|++|||
T Consensus 632 gfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~-~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvD 710 (887)
T KOG1329|consen 632 GFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDP-ADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVD 710 (887)
T ss_pred cccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCc-cccceeeeeeeeeccccccccceEEEEEEeeeeEEec
Confidence 1100 111000 0001111123344556555542 111110000000 0 0011123344699999999
Q ss_pred cCcccccceEEEEEccccccCcccCC
Q 009008 377 ADAGQFKRKIIAFVGGLDLCKGRYDT 402 (546)
Q Consensus 377 ~~~~~~~~~~vAfvGG~nl~~~r~d~ 402 (546)
+ ..+.||+.||.+.-.+.
T Consensus 711 D--------~~vIIGSANINqRSm~G 728 (887)
T KOG1329|consen 711 D--------EYVIIGSANINQRSMLG 728 (887)
T ss_pred C--------CEEEEeecccchhhccC
Confidence 9 79999999999855543
No 167
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.51 E-value=0.11 Score=54.33 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=84.6
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEe
Q 009008 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (546)
Q Consensus 43 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~ 122 (546)
+-|.|+|+++.+.... -.-.+...+++... .|.-+.-+..|.||....+.
T Consensus 2 ivl~i~egr~F~~~~~-----------------------------~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE 51 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR-----------------------------HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWE 51 (340)
T ss_pred EEEEEecccCCCCCCC-----------------------------ccEEEEEEeCCcee-eecCCCCCCCceeecceeee
Confidence 4689999999985421 34578889999888 88888889999999998887
Q ss_pred ecCC--------CceEEEEEEecCCc-C-CeeeEeEEEeceec---cCC--CeeeeccccccCCCCcccCCceEEEEEEe
Q 009008 123 VAHS--------AAEVHFVVKDNDFV-G-SQIMGAVGIPVEKL---CSG--DKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 123 v~~~--------~~~l~~~V~D~d~~-~-~d~IG~~~i~l~~l---~~g--~~~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
+... -..|++++|..+.. + .+.||.+.++|..+ ..+ .....||+|++...+-.+...++.+.+.-
T Consensus 52 ~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 52 CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 6531 35688888887733 3 68999999999988 544 46689999998733221223456666555
Q ss_pred ec
Q 009008 188 TP 189 (546)
Q Consensus 188 ~P 189 (546)
..
T Consensus 132 e~ 133 (340)
T PF12416_consen 132 ED 133 (340)
T ss_pred ec
Confidence 43
No 168
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.46 E-value=0.023 Score=61.75 Aligned_cols=71 Identities=24% Similarity=0.445 Sum_probs=54.6
Q ss_pred CCCCcEEEEEEC---C--EEEeeeeeeeCCCCCeEeeEEEEee-----cCCCceEEEEEEecCCcC-CeeeEeEEEecee
Q 009008 86 ITSDPYVTVSIC---G--AVIGRTFVISNSESPVWMQHFNVPV-----AHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEK 154 (546)
Q Consensus 86 g~~DPYv~v~l~---~--~~~~rT~vi~~t~nP~WNE~F~~~v-----~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~ 154 (546)
+++|||..+.=- + ..+.+|.++++++||.|-+ |.++. .+....+.+.++|++.-+ .++||++..++++
T Consensus 155 ~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~ 233 (529)
T KOG1327|consen 155 SKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSE 233 (529)
T ss_pred ccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHH
Confidence 458999877652 2 4456999999999999988 33332 233577889999999887 5899999999988
Q ss_pred ccC
Q 009008 155 LCS 157 (546)
Q Consensus 155 l~~ 157 (546)
+..
T Consensus 234 ~~~ 236 (529)
T KOG1327|consen 234 LQE 236 (529)
T ss_pred hcc
Confidence 863
No 169
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.15 E-value=0.53 Score=42.53 Aligned_cols=120 Identities=22% Similarity=0.343 Sum_probs=78.8
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEE--EeeeeeeeC-CCCCeEee
Q 009008 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAV--IGRTFVISN-SESPVWMQ 117 (546)
Q Consensus 41 g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~--~~rT~vi~~-t~nP~WNE 117 (546)
-.+.|+|.+..+++..+ ..-||+..-++.. .+.|..... +..=.|||
T Consensus 7 f~~~l~i~~l~~~p~~~------------------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e 56 (143)
T PF10358_consen 7 FQFDLTIHELENLPSSN------------------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNE 56 (143)
T ss_pred EEEEEEEEEeECcCCCC------------------------------CEEEEEEEECCCCccceeeeeeeccccEEEEee
Confidence 35789999999988521 2345555555544 345555433 56689999
Q ss_pred EEEEeec----C-----CCceEEEEEEecCCcCC-eeeEeEEEeceeccCC--CeeeeccccccCCCCcccCCceEEEEE
Q 009008 118 HFNVPVA----H-----SAAEVHFVVKDNDFVGS-QIMGAVGIPVEKLCSG--DKIEGAFPILNSSRKPCKAGAVLSLSI 185 (546)
Q Consensus 118 ~F~~~v~----~-----~~~~l~~~V~D~d~~~~-d~IG~~~i~l~~l~~g--~~~~~W~~L~~~~g~~~k~~g~I~l~l 185 (546)
.|.+++. . ....+.|.|+....-+. ..||.+.|.|.++... .....-++|.... +..+.+++.+
T Consensus 57 ~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~----~~~a~L~isi 132 (143)
T PF10358_consen 57 EFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK----KSNATLSISI 132 (143)
T ss_pred EEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC----CCCcEEEEEE
Confidence 9987743 1 12457888887643333 5999999999999863 4555566665431 2457889999
Q ss_pred Eeecccccc
Q 009008 186 QYTPVENMS 194 (546)
Q Consensus 186 ~f~P~~~~~ 194 (546)
++.++....
T Consensus 133 ~~~~~~~~~ 141 (143)
T PF10358_consen 133 SLSELREDP 141 (143)
T ss_pred EEEECccCC
Confidence 887765543
No 170
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.90 E-value=0.16 Score=48.01 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=48.3
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeeeCCCCCe
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESPV 114 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---rT~vi~~t~nP~ 114 (546)
+..+.|+|+.+.+|.-.+ ...+-||++.| +++.+. .|+.+.-+.++.
T Consensus 7 ~~~f~i~i~~~~~~~~~~----------------------------~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~ 58 (173)
T cd08693 7 EEKFSITLHKISNLNAAE----------------------------RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPV 58 (173)
T ss_pred CCCEEEEEEEeccCccCC----------------------------CCceEEEEEEEEECCEEccCceEccccCCCCccc
Confidence 456899999999997411 12566887766 555443 455444457799
Q ss_pred EeeEEEEee--cCC--CceEEEEEEecC
Q 009008 115 WMQHFNVPV--AHS--AAEVHFVVKDND 138 (546)
Q Consensus 115 WNE~F~~~v--~~~--~~~l~~~V~D~d 138 (546)
|||.+.|++ .+. ...|.|+||+..
T Consensus 59 Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 59 WNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred cceeEEcccchhcCChhHeEEEEEEEec
Confidence 999877764 332 478999999854
No 171
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=94.84 E-value=0.048 Score=54.01 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEec
Q 009008 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWD 309 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD 309 (546)
..+.+.+.|++|+++|+|..|. ..-..|.+.|++|.+|||+|.++++.
T Consensus 11 I~~~i~elI~~Ae~eI~is~~~-----------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 11 ILERIRELIENAESEIYISIPP-----------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHC-SSEEEEEE-G-----------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHhheEEEEEcCH-----------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 6889999999999999999881 12368999999999999999999855
No 172
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.79 E-value=0.23 Score=46.26 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCCCcEEEEEE--CCEEEe---eeeeeeCCCCCeEeeEEEEeec--CC--CceEEEEEEecCCcC-CeeeEeEEEece
Q 009008 86 ITSDPYVTVSI--CGAVIG---RTFVISNSESPVWMQHFNVPVA--HS--AAEVHFVVKDNDFVG-SQIMGAVGIPVE 153 (546)
Q Consensus 86 g~~DPYv~v~l--~~~~~~---rT~vi~~t~nP~WNE~F~~~v~--~~--~~~l~~~V~D~d~~~-~d~IG~~~i~l~ 153 (546)
..+|-||++.| +++.+. +|..+.-+..+.|||-..|++. +. .+.|.|+|||.+..+ ...||.+.++|=
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 44788999987 444332 5655555777999997776643 33 478999999976544 568999888874
No 173
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.17 E-value=0.52 Score=43.59 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=67.9
Q ss_pred cEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEeecCC--------------CceEEEEEEecCCcC-CeeeEeEEEecee
Q 009008 90 PYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHS--------------AAEVHFVVKDNDFVG-SQIMGAVGIPVEK 154 (546)
Q Consensus 90 PYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~--------------~~~l~~~V~D~d~~~-~d~IG~~~i~l~~ 154 (546)
-++-+.+.++++ +|+-+.-+.+|.++|.|-|++... .+.|.+.|.--|..+ ..++|+..+.-..
T Consensus 36 ~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 36 FTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred EEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 355556688888 999999999999999999987543 245677776666555 5799998888877
Q ss_pred ccCCCee--eeccccccCCCCcccCCceEEEEEEeeccc
Q 009008 155 LCSGDKI--EGAFPILNSSRKPCKAGAVLSLSIQYTPVE 191 (546)
Q Consensus 155 l~~g~~~--~~W~~L~~~~g~~~k~~g~I~l~l~f~P~~ 191 (546)
+...+.. ..-..|...........|.+.++++..|..
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 7654332 223344433222112457888888877643
No 174
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.80 E-value=0.22 Score=50.48 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=63.6
Q ss_pred ceEEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCC
Q 009008 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESP 113 (546)
Q Consensus 34 ~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP 113 (546)
+++.-+.|.|.+.++++++|.-.... ++-+.+-||++..+.+..+||++-....-=
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~------------------------kglt~~~ycVle~drqh~aRt~vrs~~~~f 99 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQ------------------------KGLTVCFYCVLEPDRQHPARTRVRSSGPGF 99 (442)
T ss_pred eeeecccceEEEEEecccccccChhc------------------------cCceeeeeeeeeecccCccccccccCCCCc
Confidence 45556789999999999999744321 134578999999998888888887666777
Q ss_pred eEeeEEEEeecCCCceEEEEEEecCCc
Q 009008 114 VWMQHFNVPVAHSAAEVHFVVKDNDFV 140 (546)
Q Consensus 114 ~WNE~F~~~v~~~~~~l~~~V~D~d~~ 140 (546)
.|.|+|++.+. ....+.+-||.|+.-
T Consensus 100 ~w~e~F~~Dvv-~~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 100 AWAEDFKHDVV-NIEVLHYLVYSWPPQ 125 (442)
T ss_pred cchhhceeecc-cceeeeEEEeecCch
Confidence 89999999876 346778888888764
No 175
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.63 E-value=0.75 Score=42.46 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=44.5
Q ss_pred CCcEEEEEE--CCEEEe---eeeeeeCCCCCeEeeEEEEee--cC--CCceEEEEEEecCCcC---CeeeEeEEEecee
Q 009008 88 SDPYVTVSI--CGAVIG---RTFVISNSESPVWMQHFNVPV--AH--SAAEVHFVVKDNDFVG---SQIMGAVGIPVEK 154 (546)
Q Consensus 88 ~DPYv~v~l--~~~~~~---rT~vi~~t~nP~WNE~F~~~v--~~--~~~~l~~~V~D~d~~~---~d~IG~~~i~l~~ 154 (546)
.+-||++++ +++... .|+....+.++.|||...|++ .+ ....|.|+||+.+..+ ...||.+.++|=+
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 567888876 443222 333333347899999877764 33 2478999999866443 4689999988843
No 176
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=91.85 E-value=0.41 Score=49.69 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcc-----ceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCcc
Q 009008 251 CWQDVYDAINQAR-----RLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (546)
Q Consensus 251 ~f~~l~~aI~~Ak-----~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~ 325 (546)
-|+.+.+.|++|- .+|-++-|.+. ....+.++|.+||+.|-+|.++| .-..-+. .
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~a----------~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFD-----E---- 78 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRVA----------SNSPIVNALIEAAENGKQVTVLV-ELKARFD-----E---- 78 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS-----------TT-HHHHHHHHHHHTT-EEEEEE-STTSSST-----T----
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEecC----------CCCHHHHHHHHHHHcCCEEEEEE-EEecccc-----H----
Confidence 5888888898884 48888877432 23799999999999999999998 3221110 0
Q ss_pred CCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCC
Q 009008 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (546)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H 405 (546)
..+-.+.+.|+++||+|..--+ .+--|.|+++|=-...+ +-+..+++|.-|....
T Consensus 79 -e~Ni~Wa~~Le~aGv~ViyG~~----------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~------- 133 (352)
T PF13090_consen 79 -ENNIHWAKRLEEAGVHVIYGVP----------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK------- 133 (352)
T ss_dssp -CCCCCCCHHHHHCT-EEEE--T----------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SSTT-------
T ss_pred -HHHhHHHhhHHhcCeEEEcCCC----------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc-------
Confidence 1122345568899999986311 13469999999543222 3346788877665431
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccCh-HHHHHHHHHHHH
Q 009008 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEER 458 (546)
Q Consensus 406 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gp-aa~dl~~~F~~r 458 (546)
-..-+-|+.+.-.-| .+.|+...|..-
T Consensus 134 --------------------------TAr~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 134 --------------------------TARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp --------------------------HCCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred --------------------------chhheecceeecCCHHHHHHHHHHHHHH
Confidence 012345766665555 477777777554
No 177
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=91.40 E-value=0.28 Score=51.24 Aligned_cols=130 Identities=20% Similarity=0.187 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhc--CCCeEEEEEecCC-ccccccCCcccCccC
Q 009008 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQ--EGVRVLILAWDDP-TSRSILGYKTDGIMS 326 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~--rGV~VriLvwD~~-~s~~~~~~~~~~~~~ 326 (546)
++|+.+...|..||++|+|+.- ||-. ....|.+.|..+.+ .-.+|.||+ |.. |....++-.. |.
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasL------YlG~---~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~s---~l 105 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASL------YLGK---LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSCS---AL 105 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeee------ccch---hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccch---hh
Confidence 3899999999999999999964 3422 44777788877744 568999997 764 3322221110 10
Q ss_pred CCcHHHHHhhcCCCcEEEEc--cCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCC
Q 009008 327 TNDEETRRFFKHSSVQVLLC--PRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTP 403 (546)
Q Consensus 327 ~~~~~~~~~l~~~gv~v~~~--p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~ 403 (546)
...--.+++ -..|++.++ |...|......+....-..+..|.|+.-+|+ -..+-|.|++++|+-+.
T Consensus 106 lp~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdd---------eviiSGanls~dyfTNR 173 (469)
T KOG3964|consen 106 LPVWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDD---------EVIISGANLSNDYFTNR 173 (469)
T ss_pred chHHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccH---------hhhcccccchhhhhccc
Confidence 000011111 123555554 3333322111111111234678999999998 46788999999887543
No 178
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.24 E-value=0.95 Score=42.61 Aligned_cols=88 Identities=16% Similarity=0.274 Sum_probs=56.4
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeee--C--C
Q 009008 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVIS--N--S 110 (546)
Q Consensus 40 ~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---rT~vi~--~--t 110 (546)
...+.|+|..+.+++.... ....|-||++.| +++.+. .|+... + .
T Consensus 7 ~~~~~i~v~~~h~~~~~~~--------------------------~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~ 60 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWV--------------------------QSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFF 60 (171)
T ss_pred cccEEEEEEEeecCChHHh--------------------------hccccEEEEEEEEECCEECcCceeccccccccCcc
Confidence 4568899999999874432 122678888877 555443 333211 1 3
Q ss_pred CCCeEeeEEEEeec--C--CCceEEEEEEecCCcC----------CeeeEeEEEece
Q 009008 111 ESPVWMQHFNVPVA--H--SAAEVHFVVKDNDFVG----------SQIMGAVGIPVE 153 (546)
Q Consensus 111 ~nP~WNE~F~~~v~--~--~~~~l~~~V~D~d~~~----------~d~IG~~~i~l~ 153 (546)
..+.|||-..|++. + ....|.|++++....+ ...||.+.++|=
T Consensus 61 ~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 61 PRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred ccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 35789997777643 2 2478999999855432 357888777763
No 179
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.18 E-value=1.3 Score=41.61 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=55.6
Q ss_pred CCcEEEEEECCEEEeeeeeeeC--CCCCeEeeEEEEeecCCCceEEEEEEecCCcCCeeeEeEEEecee
Q 009008 88 SDPYVTVSICGAVIGRTFVISN--SESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEK 154 (546)
Q Consensus 88 ~DPYv~v~l~~~~~~rT~vi~~--t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~ 154 (546)
..-|++|.++++.+.+|+...- ...=.+||.|.+.+..--+.|.+.||-....++..|+++.+|+-.
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPG 105 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCC
Confidence 5679999999999999887644 333567999999998777899999998777678999999999853
No 180
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.97 E-value=1.1 Score=40.84 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=42.7
Q ss_pred cEEEEEE--CCEEEe----eeeeeeCC-CCCeEeeEEEEee--cC--CCceEEEEEEecCCcC-C----eeeEeEEEece
Q 009008 90 PYVTVSI--CGAVIG----RTFVISNS-ESPVWMQHFNVPV--AH--SAAEVHFVVKDNDFVG-S----QIMGAVGIPVE 153 (546)
Q Consensus 90 PYv~v~l--~~~~~~----rT~vi~~t-~nP~WNE~F~~~v--~~--~~~~l~~~V~D~d~~~-~----d~IG~~~i~l~ 153 (546)
-||++.| +++... .|+...-+ .+|.|||.+.|++ .+ ....|.|+|+..+... . ..||.+.++|=
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 4666666 554432 56655555 7999999766664 33 3578999999866544 3 68999988874
Q ss_pred e
Q 009008 154 K 154 (546)
Q Consensus 154 ~ 154 (546)
+
T Consensus 84 d 84 (142)
T PF00792_consen 84 D 84 (142)
T ss_dssp -
T ss_pred C
Confidence 4
No 181
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=90.42 E-value=1.2 Score=49.69 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhccc-----eEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCc
Q 009008 250 SCWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGI 324 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~ 324 (546)
+.|+.+.+.|++|-. .|-++-| |.+ ....|.++|.+||+.|-+|-+|| --..- +.
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAIKqTLY---------Rt~-~dSpIV~ALi~AA~nGKqVtvlV-ELkAR-----FD---- 411 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAIKQTLY---------RTS-KDSPIVRALIDAAENGKQVTVLV-ELKAR-----FD---- 411 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEEEEEE---------ecC-CCCHHHHHHHHHHHcCCeEEEEE-EEhhh-----cC----
Confidence 368899999999853 4555555 332 23799999999999999999998 21110 00
Q ss_pred cCCCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEcc
Q 009008 325 MSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDA 377 (546)
Q Consensus 325 ~~~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~ 377 (546)
...+-.+.+.|.++||+|++-- ..+.-|.|+++|=-
T Consensus 412 -EE~NI~WAk~LE~AGvhVvyG~----------------~glKtHAKm~lVvR 447 (696)
T COG0855 412 -EEANIHWAKRLERAGVHVVYGV----------------VGLKTHAKMLLVVR 447 (696)
T ss_pred -hhhhhHHHHHHHhCCcEEEecc----------------cceeeeeeEEEEEE
Confidence 0123345677899999998621 12457999998844
No 182
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.98 E-value=2.2 Score=35.86 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEeecCCCceEEEEEEecCCcCCeeeEeEEEeceec
Q 009008 88 SDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKL 155 (546)
Q Consensus 88 ~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~~l 155 (546)
++-.+.+.+++..+++|.-.. ..+..|+++|.|.+. ...+|+|.|+=.|. ..+-|...+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 577899999999999998654 368999999999986 56789999976554 34556667777763
No 183
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.29 E-value=3.2 Score=39.43 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=31.5
Q ss_pred cEEEEEE--CCEEEe--eeeeeeCCCCCeEeeEEEEee--cCC--CceEEEEEEec
Q 009008 90 PYVTVSI--CGAVIG--RTFVISNSESPVWMQHFNVPV--AHS--AAEVHFVVKDN 137 (546)
Q Consensus 90 PYv~v~l--~~~~~~--rT~vi~~t~nP~WNE~F~~~v--~~~--~~~l~~~V~D~ 137 (546)
-||++.| +++... +|+....+.+|.|||-+.|++ .+. ...|.|+||+.
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 4666655 443221 555555577899999766664 333 47899999985
No 184
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.72 E-value=4.6 Score=34.40 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=33.7
Q ss_pred CCcEEEEEE--CCEEEe---eeeeeeCCCCCeEeeEEEEeec--CC--CceEEEEEEec
Q 009008 88 SDPYVTVSI--CGAVIG---RTFVISNSESPVWMQHFNVPVA--HS--AAEVHFVVKDN 137 (546)
Q Consensus 88 ~DPYv~v~l--~~~~~~---rT~vi~~t~nP~WNE~F~~~v~--~~--~~~l~~~V~D~ 137 (546)
++-||++.+ +++... .|+.+.-+..+.|||-..|++. +. ...|.|+||+.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 478898877 554432 4554444666999997776643 32 47899999874
No 185
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=86.69 E-value=1.9 Score=47.24 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=50.0
Q ss_pred EEEeeeeeeeCCCCCeEeeEEEEee-cCCCceEEEEEEecCCc-----CCeeeEeEEEeceeccCCCe
Q 009008 99 AVIGRTFVISNSESPVWMQHFNVPV-AHSAAEVHFVVKDNDFV-----GSQIMGAVGIPVEKLCSGDK 160 (546)
Q Consensus 99 ~~~~rT~vi~~t~nP~WNE~F~~~v-~~~~~~l~~~V~D~d~~-----~~d~IG~~~i~l~~l~~g~~ 160 (546)
..+++|.++.+.+||.|-+.|.+.. .+..+.++|.++|.+.. ..+++|++...++++.....
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~ 107 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG 107 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence 4567999999999999999988774 34568899999986643 26899999999998885433
No 186
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=86.22 E-value=2.1 Score=40.69 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=31.5
Q ss_pred eeeeeeeCCCCCeEeeEEEEeecCC---CceEEEEEEecCCcC----CeeeEeEEEecee
Q 009008 102 GRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG----SQIMGAVGIPVEK 154 (546)
Q Consensus 102 ~rT~vi~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d~~~----~d~IG~~~i~l~~ 154 (546)
..|.|...+.+|.|+|+|.+.++.. ...|.|++++...-. ...+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3777777889999999999988654 478999998855322 2578887777754
No 187
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.07 E-value=4.5 Score=38.92 Aligned_cols=36 Identities=17% Similarity=0.513 Sum_probs=29.6
Q ss_pred eeeeeeeCCCCCeEeeEEEEeecCC---CceEEEEEEec
Q 009008 102 GRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDN 137 (546)
Q Consensus 102 ~rT~vi~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~ 137 (546)
.+|-|..-+.+|.|||++.+.++.. ...|.|+++..
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~ 93 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHR 93 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEee
Confidence 3888888899999999999887643 47899999764
No 188
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=82.03 E-value=3.1 Score=39.88 Aligned_cols=35 Identities=23% Similarity=0.624 Sum_probs=29.0
Q ss_pred eeeeeeCCCCCeEeeEEEEeecCC---CceEEEEEEec
Q 009008 103 RTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDN 137 (546)
Q Consensus 103 rT~vi~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~ 137 (546)
+|-|..-+.+|.|||++.+.++.. ...|.|+++..
T Consensus 56 ~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~ 93 (189)
T cd08695 56 RSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHC 93 (189)
T ss_pred EEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEe
Confidence 888888899999999999988643 47899988763
No 189
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=79.80 E-value=13 Score=32.20 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=47.6
Q ss_pred EEEEEECCEEEeeeeeeeCCCCCeEeeEEEEeecCC--------CceEEEEEEecCCcCCeeeEeEEEeceeccC--CCe
Q 009008 91 YVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHS--------AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCS--GDK 160 (546)
Q Consensus 91 Yv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~--------~~~l~~~V~D~d~~~~d~IG~~~i~l~~l~~--g~~ 160 (546)
+|++.+-.-....|.++. +.+|.+|-+-.+.|.-. ...+.|+++..-......||.+.|++.++.. +..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666544443777776 88999999766555422 2567888865332225699999999999884 334
Q ss_pred eeeccccccCCCCcccCCceEEEEEEe
Q 009008 161 IEGAFPILNSSRKPCKAGAVLSLSIQY 187 (546)
Q Consensus 161 ~~~W~~L~~~~g~~~k~~g~I~l~l~f 187 (546)
+..-..|.+.++.. -|.+.++++.
T Consensus 81 i~~~~~l~g~~~~~---~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGED---FGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS-T---SEEEEEEEEE
T ss_pred EEEEEEEeccCCCe---EEEEEEEEEe
Confidence 66667777766653 3677777664
No 190
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=78.27 E-value=5.4 Score=37.71 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=34.6
Q ss_pred eeeeeeCCCCCeEeeEEEEeecCC---CceEEEEEEecCCcC------CeeeEeEEEece
Q 009008 103 RTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG------SQIMGAVGIPVE 153 (546)
Q Consensus 103 rT~vi~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d~~~------~d~IG~~~i~l~ 153 (546)
+|-+..+ .+|.|||+|.+.++.. ...|.|++++-..-. ...+|-+.+||-
T Consensus 56 ~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 4444444 9999999999887643 478999998854321 346777766664
No 191
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=75.97 E-value=1.4 Score=50.60 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=76.3
Q ss_pred CCCCCCCCceEEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEE
Q 009008 26 PFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVI 101 (546)
Q Consensus 26 ~~~~~~~~~~~~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~ 101 (546)
++-.+.....+.++.|.|.+.+.+|..|.+- ..-||+..+.. ...
T Consensus 744 ~~t~NddD~eSpl~ygflh~~vhsat~lkqs-------------------------------~~lY~Td~v~e~~~~~s~ 792 (1112)
T KOG4269|consen 744 PATYNDDDDESPLLYGFLHVIVHSATGLKQS-------------------------------RNLYCTDEVDEFGYFVSK 792 (1112)
T ss_pred ccccccccccCcccccceeeeeccccccccc-------------------------------cceeeehhhhhhcccccc
Confidence 3444444455556669999999999998632 35688877742 445
Q ss_pred eeeeeeeCCCCCeEeeEEEEeecCCCceEEEEEEecCC----------c-CCeeeEeEEEeceeccCCCeeeeccccc-c
Q 009008 102 GRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDF----------V-GSQIMGAVGIPVEKLCSGDKIEGAFPIL-N 169 (546)
Q Consensus 102 ~rT~vi~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~----------~-~~d~IG~~~i~l~~l~~g~~~~~W~~L~-~ 169 (546)
++|+++.+|.-|.||+.|++++.. .+.+.+..++.+. . .+...|..++.+.--.. ....|+.-. +
T Consensus 793 ~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~--~d~d~~t~v~~ 869 (1112)
T KOG4269|consen 793 ASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPH--HDADWYTQVID 869 (1112)
T ss_pred ccceeeecccCCCCChhcccchhh-ccccchhhhcccchHHHhhhccchhhcccccccccccCcccc--ccccCccChhh
Confidence 699999999999999999998763 3444454444331 1 13456665555532111 112344322 1
Q ss_pred CCCCcccCCceEEEEEEeeccc
Q 009008 170 SSRKPCKAGAVLSLSIQYTPVE 191 (546)
Q Consensus 170 ~~g~~~k~~g~I~l~l~f~P~~ 191 (546)
.+| ..+...+.|.+-.
T Consensus 870 ~n~------~~ve~~v~~ssss 885 (1112)
T KOG4269|consen 870 MNG------IVVETSVKFSSSS 885 (1112)
T ss_pred hcC------cceeeeEEecccc
Confidence 222 3566777776543
No 192
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=73.82 E-value=11 Score=35.81 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=31.0
Q ss_pred EEeeeeeeeCCCCCeEeeEEEEeecCC---CceEEEEEEecC
Q 009008 100 VIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDND 138 (546)
Q Consensus 100 ~~~rT~vi~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d 138 (546)
..+.|.|...+.+|.|+|+|.+.++-. ...|.|+.++-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 444788888899999999999987643 368999998743
No 193
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.00 E-value=1.3 Score=49.75 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=53.7
Q ss_pred CCcEEEEEECCEEEeeeeeeeCCCCCeEeeEEEEeecCCCceEEEEEEecCCcC-CeeeEeEEEeceeccC-CCeeeecc
Q 009008 88 SDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS-GDKIEGAF 165 (546)
Q Consensus 88 ~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~F~~~v~~~~~~l~~~V~D~d~~~-~d~IG~~~i~l~~l~~-g~~~~~W~ 165 (546)
.+||+.|.+.-...+.+.+.+.+.+|.|||+|.+.+. ....+.|.|+...... +.....+++-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 6999999998777767777778999999999999954 4567888888765443 3333343333333331 22345677
Q ss_pred cc
Q 009008 166 PI 167 (546)
Q Consensus 166 ~L 167 (546)
.+
T Consensus 107 ~~ 108 (694)
T KOG0694|consen 107 LI 108 (694)
T ss_pred cc
Confidence 75
No 194
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=68.90 E-value=17 Score=34.78 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=31.3
Q ss_pred EEeeeeeeeCCCCCeEeeEEEEeecCC---CceEEEEEEecC
Q 009008 100 VIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDND 138 (546)
Q Consensus 100 ~~~rT~vi~~t~nP~WNE~F~~~v~~~---~~~l~~~V~D~d 138 (546)
+.+.|.|...+.+|.|+|++.+.++-. ...|.|+.++-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 445888888899999999999887643 468999998754
No 195
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=57.00 E-value=12 Score=39.99 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=34.2
Q ss_pred eeEeEEEecee-ccCCCeeeeccccccCCCCcccCCceEEEEEEeecc
Q 009008 144 IMGAVGIPVEK-LCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (546)
Q Consensus 144 ~IG~~~i~l~~-l~~g~~~~~W~~L~~~~g~~~k~~g~I~l~l~f~P~ 190 (546)
++|.+.||++. +..+...+.||++.+...++. +.+.+ ++++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeec
Confidence 48999999999 556778899999998655543 44566 67777654
No 196
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=56.62 E-value=74 Score=35.71 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=67.7
Q ss_pred EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeeeCCCCCeEe
Q 009008 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWM 116 (546)
Q Consensus 37 ~~~~g~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WN 116 (546)
+.+.-.++|.|.+.++|+..-.. -=-||++.+.+.+. +|.-.. ..-|.|.
T Consensus 337 v~la~smevvvmevqglksvapn----------------------------rivyctmevegekl-qtdqae-askp~wg 386 (1218)
T KOG3543|consen 337 VSLALSMEVVVMEVQGLKSVAPN----------------------------RIVYCTMEVEGEKL-QTDQAE-ASKPKWG 386 (1218)
T ss_pred eeEEeeeeEEEeeeccccccCCC----------------------------eeEEEEEEeccccc-ccchhh-hcCCCCC
Confidence 45667799999999999754320 12499999999887 665433 5679999
Q ss_pred eEEEEeecCCCceEEEEEEecC--Cc--CCeeeEeEEEeceeccCCCeeeeccccccCC
Q 009008 117 QHFNVPVAHSAAEVHFVVKDND--FV--GSQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (546)
Q Consensus 117 E~F~~~v~~~~~~l~~~V~D~d--~~--~~d~IG~~~i~l~~l~~g~~~~~W~~L~~~~ 171 (546)
-.=.|...++...+.+.++-.. .+ .+.-||++.+.-. .+......|+.+.-++
T Consensus 387 tqgdfstthplpvvkvklftestgvlaledkelgrvil~pt--pns~ks~ewh~mtvpk 443 (1218)
T KOG3543|consen 387 TQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQPT--PNSAKSPEWHTMTVPK 443 (1218)
T ss_pred cCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEecC--CCCcCCccceeeecCC
Confidence 8777776666656666665433 12 2567888877432 2233345688876443
No 197
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=56.33 E-value=76 Score=33.32 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhcc--c--eEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccC
Q 009008 251 CWQDVYDAINQAR--R--LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMS 326 (546)
Q Consensus 251 ~f~~l~~aI~~Ak--~--~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~ 326 (546)
+.+-|-+.|+.|+ + .|.+-. ..-....+.+.|-+|++.||+|.++| .+.-.. .||.. |
T Consensus 184 ~~~lI~~Ei~~a~~G~~a~I~~K~-----------NsL~D~~iI~~Ly~AS~AGV~I~LiV-RGiCcL-~Pgi~--g--- 245 (352)
T PF13090_consen 184 LLELIDREIENAKAGKPARIIAKM-----------NSLTDPEIIDKLYEASQAGVKIDLIV-RGICCL-RPGIP--G--- 245 (352)
T ss_dssp HHHHHHHHHHHHCTTS-EEEEEEE-----------S-B--HHHHHHHHHHHHTTEEEEEEE-SS-B-C--TTSC--T---
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEe-----------cCCCCHHHHHHHHHHHhCCCEEEEEE-eccccc-CCCCC--C---
Confidence 4555566677765 3 444332 22233799999999999999999998 544321 11110 0
Q ss_pred CCcHHHHHhhcCCCcEEEEccCCCCCCccceeccccccccccccceEEEccCcccccceEEEEEccccccCcccCCCCCC
Q 009008 327 TNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHP 406 (546)
Q Consensus 327 ~~~~~~~~~l~~~gv~v~~~p~~~~~~~~~~~~~~~~~~~~~HqK~vVID~~~~~~~~~~vAfvGG~nl~~~r~d~~~H~ 406 (546)
...+|+|.-.- .. |-.|..+...-+. .....|+|+.|+-..=.+
T Consensus 246 ----------~SeNI~V~SIV------gR----------fLEHsRi~~F~n~-----g~~~~yisSADwM~RNl~----- 289 (352)
T PF13090_consen 246 ----------LSENIRVISIV------GR----------FLEHSRIYYFGNG-----GDEEVYISSADWMTRNLD----- 289 (352)
T ss_dssp ----------CCTTEEEEEE-------SS----------SEE--EEEEE-GC-----CS-EEEEESS-BSHHHHH-----
T ss_pred ----------CCCCEEEEEec------cc----------ccchhheeeecCC-----CCCeEEEEccccccCCCC-----
Confidence 01234443211 01 2346666666431 236889999998652222
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCeeeccccccChH-HHHHHHHHHHHHhhccC
Q 009008 407 LFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLKASK 464 (546)
Q Consensus 407 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~pWhD~~~~i~Gpa-a~dl~~~F~~rW~~~~~ 464 (546)
.-..+.+-|.-|. ...+...+.--|++..+
T Consensus 290 ----------------------------rRVEv~~PI~D~~lk~~l~~il~~~l~Dn~k 320 (352)
T PF13090_consen 290 ----------------------------RRVEVAFPIYDPRLKKELKDILDLQLKDNVK 320 (352)
T ss_dssp ----------------------------TCEEEEEE--SHHHHHHHHHHHHHCCCTTCS
T ss_pred ----------------------------eeEEEEeEECCHHHHHHHHHHHHHhCCcCcc
Confidence 1147788888886 45566677777776544
No 198
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=46.69 E-value=47 Score=29.88 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=37.4
Q ss_pred ceEEEEEEeecccc-cccc---ccCcCCCCCccCCCCCCCCcccCceEEEeeccccCCCCCCeEEecCCccccchhh
Q 009008 179 AVLSLSIQYTPVEN-MSLY---YRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC 251 (546)
Q Consensus 179 g~I~l~l~f~P~~~-~~~~---~~g~~~~~~~~~~~~~~~p~~~g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~ 251 (546)
|+|.++++|.|..+ +... .++... .+..|.++.| .+|.|+.++....+..+.|...+-+|.+++.+
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~-~~~~g~~Dpy------Vkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f 71 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVW-DNGKTTADPF------VKVYLLQDGRKISKKKTSVKRDDTNPIFNEAM 71 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCC-ccCCCCCCeE------EEEEEEeCCccccccCCccccCCCCCeeceeE
Confidence 67888888877543 2221 122211 1122233333 47888887766556677777777777655554
No 199
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=39.96 E-value=1.3e+02 Score=29.93 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHHHHhccceEEEEEEeecceeeEEeC-CCCchHHHHHHHhhhcCCCeEEEEE
Q 009008 252 WQDVYDAINQARRLIYITGWSVYHTVRLVRD-GSNTLMLGDLLKIKSQEGVRVLILA 307 (546)
Q Consensus 252 f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~-~~~~~~l~~~L~~ka~rGV~VriLv 307 (546)
.+.+.+++++ ..-+|.+-..-+....+++ ......+.++|.+|.+.||+|..+-
T Consensus 159 L~eL~~l~~~--~ra~vlF~vqr~d~~~f~p~~~~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 159 LRELEEILKE--SRAVVLFVVALPSVRAFSPNREGDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHh--CCEEEEEEEeCCCCCEEeeCcccCHHHHHHHHHHHHCCCEEEEEE
Confidence 5666666666 3333333222233333333 2345799999999999999998764
No 200
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=39.08 E-value=64 Score=29.17 Aligned_cols=32 Identities=13% Similarity=-0.078 Sum_probs=25.9
Q ss_pred ceEEEeeccccCCCCCCeEEecCC-ccccchhh
Q 009008 220 GKVTLYQDAHAHDGCLADLKLDGG-VQFNHESC 251 (546)
Q Consensus 220 ~~v~l~~dg~~~~~~~~~v~l~~g-~~y~~~~~ 251 (546)
.+|.|+.++....++++.|+..+. +++++|.+
T Consensus 39 VKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF 71 (135)
T cd08692 39 VKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETM 71 (135)
T ss_pred EEEEEEECCCcceeecCccEECCCCCceecceE
Confidence 589999999988889999999985 57655554
No 201
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=38.38 E-value=17 Score=40.19 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=60.1
Q ss_pred cccchhhHHHHH---------HHHHhccceEEEEEEeecceeeEEe-CCCCchHHHHHHHhhhcCCCeEEEEEecCCccc
Q 009008 245 QFNHESCWQDVY---------DAINQARRLIYITGWSVYHTVRLVR-DGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSR 314 (546)
Q Consensus 245 ~y~~~~~f~~l~---------~aI~~Ak~~I~I~~w~~~~~~~l~~-~~~~~~~l~~~L~~ka~rGV~VriLvwD~~~s~ 314 (546)
+|+|...|+.|+ ..|++||+.=.=-.|.++|..-|.- .+..-.+|..-|-+.++=|.+-+.|++|++..
T Consensus 57 DyKHR~~WRElY~vEEa~~L~~Li~aAke~~i~F~YAiSPGlDitySspkE~~TLKrKLDQV~qfGC~sfAlLFDDIe~- 135 (891)
T KOG3698|consen 57 DYKHRSLWRELYNVEEATYLRNLIEAAKENNINFVYAISPGLDITYSSPKEMDTLKRKLDQVRQFGCDSFALLFDDIEV- 135 (891)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHhcCceEEEEcCCCcccccCCHHHHHHHHHHHHHHHhhCchhhhhhhhhHHH-
Confidence 488888888774 4688888643333456666655432 22223566667777788899999888899864
Q ss_pred cccCCcccCccCCCcHHHHHhhcCCCcEEE
Q 009008 315 SILGYKTDGIMSTNDEETRRFFKHSSVQVL 344 (546)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 344 (546)
-|...|++.+.-|.|+.|.+.
T Consensus 136 ---------~m~~aDkevF~sFAhAqVsit 156 (891)
T KOG3698|consen 136 ---------QMQDADKEVFTSFAHAQVSIT 156 (891)
T ss_pred ---------HHhHhHHHHHHHhhhheeeeh
Confidence 244567777777888777653
No 202
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=36.29 E-value=2.8e+02 Score=29.19 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=61.2
Q ss_pred CcEEEEEECCEEEeeeeeeeCCCCCeEe--eEEEEeecCCCceEEEEEEecCCcCCeeeEeEEEece-eccCC-Ceeeec
Q 009008 89 DPYVTVSICGAVIGRTFVISNSESPVWM--QHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVE-KLCSG-DKIEGA 164 (546)
Q Consensus 89 DPYv~v~l~~~~~~rT~vi~~t~nP~WN--E~F~~~v~~~~~~l~~~V~D~d~~~~d~IG~~~i~l~-~l~~g-~~~~~W 164 (546)
.-|+.+..+...+ +|..+.-+..-.-| |...+.+..-...|.+.|+-....+..-||.+.|.+. ++..+ -....|
T Consensus 75 hiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkW 153 (508)
T PTZ00447 75 HIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEW 153 (508)
T ss_pred eEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccce
Confidence 4688999888777 67555433322222 2333444444578889898888888889999999984 44443 356789
Q ss_pred cccccCCCCcccCCceEEEEEEeeccc
Q 009008 165 FPILNSSRKPCKAGAVLSLSIQYTPVE 191 (546)
Q Consensus 165 ~~L~~~~g~~~k~~g~I~l~l~f~P~~ 191 (546)
|-+ ..+|+. .-++.|.|..+.
T Consensus 154 y~c-~kDGq~-----~cRIqLSFhKL~ 174 (508)
T PTZ00447 154 FVC-FKDGQE-----ICKVQMSFYKIQ 174 (508)
T ss_pred EEE-ecCCce-----eeeEEEEehhhh
Confidence 999 455652 335556664433
No 203
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=35.60 E-value=81 Score=31.08 Aligned_cols=50 Identities=28% Similarity=0.431 Sum_probs=32.2
Q ss_pred HHHHHHHHhcc---ceEEEEEEeecceeeEEeCCCC---chHHHHHHHhhhcCCCe-E--EEEEecCC
Q 009008 253 QDVYDAINQAR---RLIYITGWSVYHTVRLVRDGSN---TLMLGDLLKIKSQEGVR-V--LILAWDDP 311 (546)
Q Consensus 253 ~~l~~aI~~Ak---~~I~I~~w~~~~~~~l~~~~~~---~~~l~~~L~~ka~rGV~-V--riLvwD~~ 311 (546)
+.+.++|+.|+ ..++|.+ |+.+++. -.-|..+|+.++++||+ | .++. |..
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~G--------LlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~-DGR 72 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMG--------LLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFT-DGR 72 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEE--------EESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE--SS
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------EecCCCccccHHHHHHHHHHHHHcCCCEEEEEEec-CCC
Confidence 45566666666 5899998 6667653 37888999999999976 4 5553 654
No 204
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=34.22 E-value=3.2e+02 Score=29.51 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCCcEEEEEECCEEEeeeeeeeC----CCCC-eEee---EEEEeecC-------C-----CceEEEEEEecCC-----c-
Q 009008 87 TSDPYVTVSICGAVIGRTFVISN----SESP-VWMQ---HFNVPVAH-------S-----AAEVHFVVKDNDF-----V- 140 (546)
Q Consensus 87 ~~DPYv~v~l~~~~~~rT~vi~~----t~nP-~WNE---~F~~~v~~-------~-----~~~l~~~V~D~d~-----~- 140 (546)
++.+||+|+|.+--. +|-.+.= +.+| .=+- .|++.-.. . ...|+|.||--.. +
T Consensus 35 sspCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~ 113 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVG 113 (460)
T ss_pred CCCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccc
Confidence 467799999987655 4544321 1222 2222 46665221 1 1468999987332 2
Q ss_pred -CCeeeEeEEEeceeccC--CC---eeeeccccccCCCC-cccCCceEEEEEEeeccc
Q 009008 141 -GSQIMGAVGIPVEKLCS--GD---KIEGAFPILNSSRK-PCKAGAVLSLSIQYTPVE 191 (546)
Q Consensus 141 -~~d~IG~~~i~l~~l~~--g~---~~~~W~~L~~~~g~-~~k~~g~I~l~l~f~P~~ 191 (546)
+..+||.+.|||+ +.. +. ..++|+.|-..... ..+...++||.++-.|--
T Consensus 114 ~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 114 NSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred ccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 2579999999996 332 22 23789998543221 112356888888875533
No 205
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=31.66 E-value=95 Score=31.26 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=45.0
Q ss_pred CCCCeEEecCCccc-cchh---------hHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCCCe
Q 009008 233 GCLADLKLDGGVQF-NHES---------CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVR 302 (546)
Q Consensus 233 ~~~~~v~l~~g~~y-~~~~---------~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rGV~ 302 (546)
...|.|.++||++- .-+. .-+.|-..|+++...+.|.-- +.||......|.++-..+..+||+
T Consensus 199 e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHH-------llRD~~y~e~l~~l~~~~~~~GV~ 271 (304)
T COG2248 199 EKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHH-------LLRDKNYREFLEELFERAEKAGVE 271 (304)
T ss_pred hcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeeh-------hhcCCCHHHHHHHHHhhHhhcCce
Confidence 44688888888872 2111 133444556666666666554 778877778888888899999999
Q ss_pred EEE
Q 009008 303 VLI 305 (546)
Q Consensus 303 Vri 305 (546)
|.-
T Consensus 272 v~T 274 (304)
T COG2248 272 VAT 274 (304)
T ss_pred eee
Confidence 764
No 206
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=31.00 E-value=2.1e+02 Score=28.38 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.4
Q ss_pred CCchHHHHHHHhhhcCCCeEEEEE
Q 009008 284 SNTLMLGDLLKIKSQEGVRVLILA 307 (546)
Q Consensus 284 ~~~~~l~~~L~~ka~rGV~VriLv 307 (546)
.....+.++|.+|++.||+|..+-
T Consensus 192 ~~Dp~fa~~l~~A~~~GV~v~a~~ 215 (234)
T PRK00347 192 EIDPKYAELLREAVKAGVEVLAYK 215 (234)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEE
Confidence 345799999999999999998764
No 207
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=30.71 E-value=1.2e+02 Score=25.91 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=38.1
Q ss_pred EEecCCccccchh--hHHHHHHHHHhc----cceEEEEEEeecceeeEEeCCCC--chHHHHHHHhhhcCCCeEEEEEec
Q 009008 238 LKLDGGVQFNHES--CWQDVYDAINQA----RRLIYITGWSVYHTVRLVRDGSN--TLMLGDLLKIKSQEGVRVLILAWD 309 (546)
Q Consensus 238 v~l~~g~~y~~~~--~f~~l~~aI~~A----k~~I~I~~w~~~~~~~l~~~~~~--~~~l~~~L~~ka~rGV~VriLvwD 309 (546)
+..+.|..|.... +|.-+++.|++- ...|-+..- +.-+..... -..|.++|.+++++|.+|.|- |=
T Consensus 11 ~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~~~~~~i~~~~~-----L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~-Wy 84 (99)
T PF09345_consen 11 RLEISGESYPENAFAFYQPILDWLEAYLAEPNKPITFNFK-----LSYFNTSSSKALMDIFDLLEDAAQKGGKVTVN-WY 84 (99)
T ss_pred EEEEecccCccCHHHHHHHHHHHHHHHHhCCCCcEEEEEE-----EEEEecHhHHHHHHHHHHHHHHHhcCCcEEEE-EE
Confidence 3445565554433 578888887763 233433321 011222211 157788888889999999887 53
No 208
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=30.68 E-value=34 Score=35.25 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=38.0
Q ss_pred CchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccCccCCCcHHHHHhhcCCCcEEEEccC
Q 009008 285 NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPR 348 (546)
Q Consensus 285 ~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~p~ 348 (546)
...++.++|+.++++|.+++++|-+..-. + ....+.+.|++.||.+.+.+.
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtESRP~-----~--------eG~~~ak~L~~~gI~~~~I~D 178 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTESRPR-----G--------EGRIMAKELRQSGIPVTVIVD 178 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEcCCCc-----c--------hHHHHHHHHHHcCCceEEEec
Confidence 45899999999999999888888444321 1 234677889999998877554
No 209
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=30.54 E-value=1.7e+02 Score=28.67 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=32.3
Q ss_pred HHHHHHHHHhccceEEEEEEeecceeeEEeC-CCCchHHHHHHHhhhcCCCeEEEEE
Q 009008 252 WQDVYDAINQARRLIYITGWSVYHTVRLVRD-GSNTLMLGDLLKIKSQEGVRVLILA 307 (546)
Q Consensus 252 f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~-~~~~~~l~~~L~~ka~rGV~VriLv 307 (546)
.+.+.++.++- ..-.|.+-...+...-+.+ ......+.++|.+|++.||+|..+-
T Consensus 146 L~eL~~l~~~G-~ra~vlFvvqr~d~~~f~p~~~~Dp~fa~~l~~A~~~GV~v~a~~ 201 (215)
T PF03749_consen 146 LRELAELAEEG-YRAAVLFVVQRPDAERFRPNREIDPEFAEALREAAEAGVEVLAYR 201 (215)
T ss_pred HHHHHHHHhcc-CcEEEEEEEECCCCCEEeEChhcCHHHHHHHHHHHHCCCEEEEEE
Confidence 44444444442 2333333323344333433 3445899999999999999988764
No 210
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=30.21 E-value=1.8e+02 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=20.8
Q ss_pred ccccceEEE-ccCcccccceEEEEEccccccC
Q 009008 367 THHQKTVVV-DADAGQFKRKIIAFVGGLDLCK 397 (546)
Q Consensus 367 ~~HqK~vVI-D~~~~~~~~~~vAfvGG~nl~~ 397 (546)
.-|.|+.+. .. ++...||||+.|++.
T Consensus 80 ~~HgKlY~f~k~-----g~~~~a~IGSANfS~ 106 (296)
T PF09565_consen 80 PYHGKLYIFSKN-----GKPFRAYIGSANFSQ 106 (296)
T ss_pred CcccEEEEEecC-----CCceEEEEeeccccc
Confidence 469999999 33 123799999999997
No 211
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=30.01 E-value=2.5e+02 Score=32.05 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred chHHHHHHHhhhcCCCeEEEEE
Q 009008 286 TLMLGDLLKIKSQEGVRVLILA 307 (546)
Q Consensus 286 ~~~l~~~L~~ka~rGV~VriLv 307 (546)
...+.++|=+|.+.||+|.++|
T Consensus 546 D~~iI~aLY~AS~AGV~IdLIV 567 (696)
T COG0855 546 DPQIIDALYRASQAGVQIDLIV 567 (696)
T ss_pred CHHHHHHHHHHhhcCCEEEEEE
Confidence 3789999999999999999998
No 212
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.58 E-value=1.7e+02 Score=30.03 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHhccceEEEEEEeecceeeEEeCCCCchHHHHHHHhhhcCC----CeEEEEEecCCccccccCCcccCcc
Q 009008 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEG----VRVLILAWDDPTSRSILGYKTDGIM 325 (546)
Q Consensus 250 ~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~~~~l~~~L~~ka~rG----V~VriLvwD~~~s~~~~~~~~~~~~ 325 (546)
..+.+++..|...--.+.|..|-. .+.+......|.++|+.+.+.+ ++|-||+ .+-||. +..|
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~-----~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~-RGGGs~-------eDL~ 92 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPA-----SVQGEGAAASIVSALRKANEMGQADDFDVIIII-RGGGSI-------EDLW 92 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEec-----cccccchHHHHHHHHHHHHhccccccccEEEEe-cCCCCh-------HHhc
Confidence 469999999999555677776622 4455566789999999998766 9999997 777764 2345
Q ss_pred CCCcHHHHHhhcCCCcEE
Q 009008 326 STNDEETRRFFKHSSVQV 343 (546)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v 343 (546)
..+++...+.+.+..+.|
T Consensus 93 ~FN~e~varai~~~~~Pv 110 (319)
T PF02601_consen 93 AFNDEEVARAIAASPIPV 110 (319)
T ss_pred ccChHHHHHHHHhCCCCE
Confidence 556666666555544443
No 213
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=28.61 E-value=1.9e+02 Score=26.61 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCcEEEEEEC---C---EEEeeeeeeeC--CCCCeEeeEEEEeec--C--CCceEEEEEEecCCcC--CeeeEeEEEece
Q 009008 88 SDPYVTVSIC---G---AVIGRTFVISN--SESPVWMQHFNVPVA--H--SAAEVHFVVKDNDFVG--SQIMGAVGIPVE 153 (546)
Q Consensus 88 ~DPYv~v~l~---~---~~~~rT~vi~~--t~nP~WNE~F~~~v~--~--~~~~l~~~V~D~d~~~--~d~IG~~~i~l~ 153 (546)
.|||++|++- + +..+.|.+-.. +..=.||...++..+ + ....+.|+++++.... -...+.+.++++
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~d 110 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMELD 110 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEGG
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEhh
Confidence 5899999992 2 22325665422 333445655554422 1 2467899999977654 457889999999
Q ss_pred eccCCC
Q 009008 154 KLCSGD 159 (546)
Q Consensus 154 ~l~~g~ 159 (546)
++..|+
T Consensus 111 ei~~g~ 116 (147)
T PF14186_consen 111 EIKPGP 116 (147)
T ss_dssp G--SEE
T ss_pred hccCCc
Confidence 988773
No 214
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.63 E-value=4.1e+02 Score=28.05 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHHHHHHh----ccceEEEEEEeecceeeEEeCCCC----chHHHHHHHhhhcCCCeEEEEEecCCccccccCCcccC
Q 009008 252 WQDVYDAINQ----ARRLIYITGWSVYHTVRLVRDGSN----TLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDG 323 (546)
Q Consensus 252 f~~l~~aI~~----Ak~~I~I~~w~~~~~~~l~~~~~~----~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~~~ 323 (546)
++.+.++++. +++.|.+++- |+++-.. ...|.++|+ .-+++|.++-|+...... ++.
T Consensus 233 l~~l~~al~~y~~~~~rri~~Ey~-------Li~gvND~~e~a~~L~~ll~---~~~~~VNLIp~Np~~~~~---~~~-- 297 (345)
T PRK14466 233 IKEIIDLLKNYDFSKQRRVSFEYI-------VFKGLNDSLKHAKELVKLLR---GIDCRVNLIRFHAIPGVD---LEG-- 297 (345)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEE-------EeCCCCCCHHHHHHHHHHHc---CCCceEEEEecCCCCCCC---CcC--
Confidence 6777777776 7889999976 6654221 144444444 456999999988643311 111
Q ss_pred ccCCCcHHHHHhhcCCCcEEEEc
Q 009008 324 IMSTNDEETRRFFKHSSVQVLLC 346 (546)
Q Consensus 324 ~~~~~~~~~~~~l~~~gv~v~~~ 346 (546)
.-...-.++.+.|+..|+.+...
T Consensus 298 ~s~~~~~~F~~~L~~~gi~~tvR 320 (345)
T PRK14466 298 SDMARMEAFRDYLTSHGVFTTIR 320 (345)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEe
Confidence 00011134556677889887764
No 215
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=23.48 E-value=2.5e+02 Score=22.86 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=43.6
Q ss_pred CceEEEeeccccCCCCCCeEEecCCccccchhhHHHHHHHHHhcc-ceEEEEEEeecceeeEEeCCC--CchHHHHHHHh
Q 009008 219 GGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQAR-RLIYITGWSVYHTVRLVRDGS--NTLMLGDLLKI 295 (546)
Q Consensus 219 g~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~f~~l~~aI~~Ak-~~I~I~~w~~~~~~~l~~~~~--~~~~l~~~L~~ 295 (546)
+|++.||.-|.+ ...+.|.++|+.++ .-+++..-.++ ..| +.+. .-..|.++..+
T Consensus 3 ~a~~SLYPmg~~-------------------dy~~~I~~~i~~~~~~gl~~~t~~~s--T~l-~G~~~~Vf~~l~~~~~~ 60 (81)
T PF07615_consen 3 GAQFSLYPMGTD-------------------DYMDVILGAIDRLDDSGLWVETDHYS--TQL-RGDEEDVFDALEAAFER 60 (81)
T ss_dssp EEEEEEEETTST-------------------THHHHHHHHHHHCHHTTSEEEEETTE--EEE-ECBHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCc-------------------cHHHHHHHHHHHHhhcCcEEeecccE--EEE-ECCHHHHHHHHHHHHHH
Confidence 689999998654 14688889999987 45666554333 123 3322 22677777788
Q ss_pred hhcCCCeEEEEE
Q 009008 296 KSQEGVRVLILA 307 (546)
Q Consensus 296 ka~rGV~VriLv 307 (546)
++++|..|-+-+
T Consensus 61 a~~~~~H~v~~~ 72 (81)
T PF07615_consen 61 AAEEGPHVVMVV 72 (81)
T ss_dssp HHCCSSSEEEEE
T ss_pred HhccCCeEEEEE
Confidence 888887665543
No 216
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.14 E-value=18 Score=40.48 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEECCEEEeeeeeeeCCCCCeEeeE
Q 009008 85 KITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (546)
Q Consensus 85 ~g~~DPYv~v~l~~~~~~rT~vi~~t~nP~WNE~ 118 (546)
.-..++++.+.++++.. ||+....+.+|+|||.
T Consensus 302 ~f~~~~~~itsf~~~~f-rt~~~~~~e~piyNe~ 334 (975)
T KOG2419|consen 302 LFKDKWLAITSFGEQTF-RTEISDDTEKPIYNED 334 (975)
T ss_pred ccCCCchheeecchhhh-hhhhhccccccccccc
Confidence 34578999999998888 9999999999999996
No 217
>PRK05434 phosphoglyceromutase; Provisional
Probab=22.82 E-value=2e+02 Score=31.98 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhccceEEEEEEeecceeeEEeCCCC---chHHHHHHHhhhcCCC-eEEEEE
Q 009008 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSN---TLMLGDLLKIKSQEGV-RVLILA 307 (546)
Q Consensus 251 ~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~~---~~~l~~~L~~ka~rGV-~VriLv 307 (546)
.|..+++........++|.+ |+.|++. -.-|..+|+.++++|| +|+|=+
T Consensus 97 ~~~~~~~~~~~~~~~lHl~G--------L~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~ 149 (507)
T PRK05434 97 ALLDAIDKAKKNGGALHLMG--------LLSDGGVHSHIDHLFALLELAKEEGVKKVYVHA 149 (507)
T ss_pred HHHHHHHHHHhcCCeEEEEE--------eccCCCcccHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 45555555554558899998 5666542 3788899999999998 776643
No 218
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=22.59 E-value=4.9e+02 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.6
Q ss_pred CCchHHHHHHHhhhcCCCeEEEE
Q 009008 284 SNTLMLGDLLKIKSQEGVRVLIL 306 (546)
Q Consensus 284 ~~~~~l~~~L~~ka~rGV~VriL 306 (546)
+....+.++|.+|.++||+|...
T Consensus 189 e~Dp~fa~~l~~A~~~GVev~~~ 211 (235)
T COG1489 189 EIDPKFAELLREAIKAGVEVLAY 211 (235)
T ss_pred ccCHHHHHHHHHHHHcCCEEEEE
Confidence 34589999999999999988765
No 219
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.62 E-value=4.5e+02 Score=28.01 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=51.5
Q ss_pred ccchhhHHHHHHHHHhccceEEEEEEeecceeeEEeCCC----CchHHHHHHHhhhcCCCeEEEEEecCCccccccCCcc
Q 009008 246 FNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKT 321 (546)
Q Consensus 246 y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~~~~~l~~~~~----~~~~l~~~L~~ka~rGV~VriLvwD~~~s~~~~~~~~ 321 (546)
|.-++..+++.+.....+..|.|++= ++++-. ....|.++|+......++|.+|-|...+... |..
T Consensus 262 ~~l~~ll~a~~~~~~~~grrv~ieyv-------Li~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~---y~~ 331 (373)
T PRK14459 262 WKVDEVLDAARYYADATGRRVSIEYA-------LIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSK---WTA 331 (373)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEEEE-------EeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCC---CcC
Confidence 54334444444444455678888864 555322 1256888888765557899999888765421 111
Q ss_pred cCccCCCcHHHHHhhcCCCcEEEEc
Q 009008 322 DGIMSTNDEETRRFFKHSSVQVLLC 346 (546)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~gv~v~~~ 346 (546)
... ..-.++.+.|++.||.|...
T Consensus 332 ~~~--~~~~~F~~~L~~~gi~~tiR 354 (373)
T PRK14459 332 SPP--EVEREFVRRLRAAGVPCTVR 354 (373)
T ss_pred CCH--HHHHHHHHHHHHCCCeEEee
Confidence 100 01134566678899988763
No 220
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=20.57 E-value=2.9e+02 Score=24.30 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=19.2
Q ss_pred ceEEEeeccccCCCCCCeEEecCCccccchhh
Q 009008 220 GKVTLYQDAHAHDGCLADLKLDGGVQFNHESC 251 (546)
Q Consensus 220 ~~v~l~~dg~~~~~~~~~v~l~~g~~y~~~~~ 251 (546)
.+|.++.+........+.+...+-+|.+++.+
T Consensus 41 Vkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F 72 (128)
T cd08392 41 VKVCLLPDKSHNSKRKTAVKKGTVNPVFNETL 72 (128)
T ss_pred EEEEEEeCCcccceeecccccCCCCCccceEE
Confidence 36666666543344566676666777665553
Done!