BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009010
         (546 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XU0|A Chain A, Crystal Structure Of The Nts-Dbl1(Alpha-1) Domain Of The
           Plasmodium Falciparum Membrane Protein 1 (Pfemp1) From
           The Varo Strain
          Length = 487

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 387 HFFHCIVRYGYKDARKEIYAFESHLIDTVAE 417
           H FH  ++ GY + RK  Y  E +  D  AE
Sbjct: 80  HLFHTNIKTGYNEGRKPCYGREQNRFDENAE 110


>pdb|2YK0|A Chain A, Structure Of The N-Terminal Nts-Dbl1-Alpha And Cidr-Gamma
           Double Domain Of The Pfemp1 Protein From Plasmodium
           Falciparum Varo Strain
          Length = 790

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 387 HFFHCIVRYGYKDARKEIYAFESHLIDTVAE 417
           H FH  ++ GY + RK  Y  E +  D  AE
Sbjct: 83  HLFHTNIKTGYNEGRKPCYGREQNRFDENAE 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,351,316
Number of Sequences: 62578
Number of extensions: 598951
Number of successful extensions: 1277
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 23
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)