Query 009010
Match_columns 546
No_of_seqs 148 out of 832
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 95.1 0.058 2E-06 55.8 9.0 71 155-233 290-361 (444)
2 4djk_A Probable glutamate/gamm 93.6 0.84 2.9E-05 47.9 14.1 37 65-101 202-240 (511)
3 3l1l_A Arginine/agmatine antip 90.3 1.4 4.8E-05 45.2 10.7 51 125-175 258-312 (445)
4 2bm3_A Type 2 cohesin, scaffol 27.3 17 0.00059 33.8 0.8 12 41-52 44-55 (166)
5 3kcp_B Cellulosome anchoring p 26.5 18 0.00062 34.1 0.8 13 41-53 56-68 (187)
6 2rdd_B UPF0092 membrane protei 17.9 1.2E+02 0.0041 21.0 3.5 18 274-291 1-18 (37)
7 3ghp_A Cellulosomal scaffoldin 16.1 41 0.0014 32.6 0.8 6 394-399 122-127 (227)
8 3rhw_A Avermectin-sensitive gl 14.4 3E+02 0.01 27.4 6.9 62 171-236 198-263 (347)
9 1nrp_R Receptor based peptide 14.1 53 0.0018 21.1 0.7 16 116-131 5-20 (26)
10 3l8q_A Cellulosomal scaffoldin 11.5 65 0.0022 33.0 0.8 13 40-52 209-221 (350)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.10 E-value=0.058 Score=55.76 Aligned_cols=71 Identities=8% Similarity=0.076 Sum_probs=35.8
Q ss_pred hhhhchhhHHHHHHHcCCCCceeEEecCCccCCcccchhhHHHHHHHhhh-eeEEecCchhHHhhhhhhhhhHHHHHHHH
Q 009010 155 AIISATFSIISQCRALSCFPRVKIMHTSNQIHGQIYIPEMNWILMIFCLG-VVVGFRDTDMIANAYGLAVITVMFVTTCL 233 (546)
Q Consensus 155 A~Isg~FSl~~Qai~Lg~~Pr~~i~hTS~~~~GQIYiP~vNwlL~~~~l~-vvl~F~~S~~l~~AYGiAVt~~M~iTT~L 233 (546)
+.+.+.--+.....+-|.+|+. -++..++. |. |-++..+++. +...+-+-+.+.+.++++...+..++.+-
T Consensus 290 ~~~~~~sR~l~a~a~dg~lP~~----f~~~~~~~---P~-~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 361 (444)
T 3gia_A 290 ATIYGGANVAYSLAKDGELPEF----FERKVWFK---ST-EGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILS 361 (444)
T ss_dssp HHHTTTHHHHHHHHHHSSCCSS----CCTTSCCS---CT-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHH----HhCCCCCC---Cc-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566678999963 12222222 55 3333333222 22223466777777777766665554433
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=93.62 E-value=0.84 Score=47.89 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=22.5
Q ss_pred cceeeccceeheecchhHhhhccCCCC--Ccceeehhhh
Q 009010 65 DGWSSLGGVVLCVTGAEAMFADLGHFS--HLPIRIAFAT 101 (546)
Q Consensus 65 ~~~~~LG~V~L~~TGaEALyADmGHFg--~~~Ir~aw~~ 101 (546)
.+|..+..++.+.+|-|+.-.=-+-.- +|.+..+-..
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHH
Confidence 345567778899999997644333332 4555555443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=90.27 E-value=1.4 Score=45.22 Aligned_cols=51 Identities=12% Similarity=-0.070 Sum_probs=24.0
Q ss_pred ccccchhc----ccccchhHHHHHHHHHHHHhhhhhhhchhhHHHHHHHcCCCCc
Q 009010 125 LERSFFKA----IPEAVFWPVFIIATLATAVASQAIISATFSIISQCRALSCFPR 175 (546)
Q Consensus 125 ~~npFf~~----~P~~~~~p~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr 175 (546)
..+|+... ..+|..+.+.+.+.++..-+.-+.+.++--+.....+-|.+||
T Consensus 258 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 312 (445)
T 3l1l_A 258 SASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP 312 (445)
T ss_dssp TTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred cCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 34565432 3345444333333333222222233333344456778899996
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=27.31 E-value=17 Score=33.75 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=8.0
Q ss_pred cCCcceeeecCH
Q 009010 41 RWNPGVVRALSP 52 (546)
Q Consensus 41 ~~~P~Vl~AlnP 52 (546)
+|||+||+|+||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 466666666666
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=26.47 E-value=18 Score=34.07 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=6.6
Q ss_pred cCCcceeeecCHH
Q 009010 41 RWNPGVVRALSPY 53 (546)
Q Consensus 41 ~~~P~Vl~AlnP~ 53 (546)
+|||+||+|+||.
T Consensus 56 KYDP~VLqaV~p~ 68 (187)
T 3kcp_B 56 VYDPKVLMAVDPE 68 (187)
T ss_dssp ECCTTTEEEECTT
T ss_pred eEChhHeeecccC
Confidence 3455555555553
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=17.95 E-value=1.2e+02 Score=21.05 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=9.6
Q ss_pred CccHHHHHHHHHhhhhhh
Q 009010 274 GGWLPLVFSLVTLSIMCI 291 (546)
Q Consensus 274 GGW~pl~ia~i~~~iM~~ 291 (546)
|||..++.-++++.+||-
T Consensus 1 ~~~~~~l~~v~~~~ifYF 18 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYF 18 (37)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 455555555555555543
No 7
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=16.06 E-value=41 Score=32.60 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.5
Q ss_pred Eeeeec
Q 009010 394 RYGYKD 399 (546)
Q Consensus 394 ryGf~e 399 (546)
.-||+.
T Consensus 122 vIgFKV 127 (227)
T 3ghp_A 122 VVGFKV 127 (227)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 334443
No 8
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=14.43 E-value=3e+02 Score=27.45 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=31.9
Q ss_pred CCCCceeEEecCCcc----CCcccchhhHHHHHHHhhheeEEecCchhHHhhhhhhhhhHHHHHHHHHHH
Q 009010 171 SCFPRVKIMHTSNQI----HGQIYIPEMNWILMIFCLGVVVGFRDTDMIANAYGLAVITVMFVTTCLMFL 236 (546)
Q Consensus 171 g~~Pr~~i~hTS~~~----~GQIYiP~vNwlL~~~~l~vvl~F~~S~~l~~AYGiAVt~~M~iTT~L~~~ 236 (546)
|-+|++++.-+=++. .=|+|+|.+ ++.++..+..+=..++.++==++++|..+.+|+++..+
T Consensus 198 ~~y~~l~~~~~l~R~~~~y~~~l~iP~~----li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 198 GIYSCLRTTIQLKREFSFYLLQLYIPSC----MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp CEECEEEEEEEEEECSHHHHHHTHHHHH----HHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEEEEEEEeeEEEEEeehhHH----HHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 445555544433333 338999986 22222222222233333333457777777777776654
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=14.06 E-value=53 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=0.0
Q ss_pred chhccccccccccchh
Q 009010 116 AFYTKHKEDLERSFFK 131 (546)
Q Consensus 116 A~ll~~p~~~~npFf~ 131 (546)
++|++||++.-.||+.
T Consensus 5 sfllrnpndkyepfwe 20 (26)
T 1nrp_R 5 SFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhcCCCcccCcccc
No 10
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Probab=11.49 E-value=65 Score=33.05 Aligned_cols=13 Identities=31% Similarity=0.973 Sum_probs=0.0
Q ss_pred ccCCcceeeecCH
Q 009010 40 VRWNPGVVRALSP 52 (546)
Q Consensus 40 ~~~~P~Vl~AlnP 52 (546)
++|||+||+|+||
T Consensus 209 IKYDP~VLqaV~p 221 (350)
T 3l8q_A 209 IKYDPTVLQAVNP 221 (350)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhHeeeccC
Done!