Query 009010
Match_columns 546
No_of_seqs 148 out of 832
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 16:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009010.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009010hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 23.5 19 0.0014 31.4 2.6 118 105-235 12-131 (173)
2 d2bm3a1 b.2.2.2 (A:5-166) Scaf 21.6 12 0.00088 32.5 0.8 13 41-53 40-52 (162)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 18.3 16 0.0011 26.4 0.7 40 105-146 15-54 (57)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 13.3 42 0.0031 20.3 1.6 20 275-294 5-24 (27)
5 d1jb0i_ f.23.17.1 (I:) Subunit 10.6 10 0.00075 25.2 -2.1 20 188-207 12-31 (38)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 9.5 1.2E+02 0.0084 23.1 3.7 26 373-398 57-82 (103)
7 d3cx5d2 f.23.11.1 (D:261-307) 8.7 1.2E+02 0.0086 20.9 2.9 22 227-248 14-36 (47)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 7.7 2.6E+02 0.019 26.9 6.3 52 251-303 378-432 (509)
9 d1or7a2 a.177.1.1 (A:-1-111) S 6.1 1.5E+02 0.011 22.3 2.8 23 505-527 74-96 (113)
10 d1cs6a3 b.1.1.4 (A:209-299) Ax 5.6 2.2E+02 0.016 20.2 3.3 41 354-394 35-75 (91)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=23.50 E-value=19 Score=31.43 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=69.7
Q ss_pred HHHHHhhccc--cchhccccccccccchhcccccchhHHHHHHHHHHHHhhhhhhhchhhHHHHHHHcCCCCceeEEecC
Q 009010 105 PCLILAYMGE--AAFYTKHKEDLERSFFKAIPEAVFWPVFIIATLATAVASQAIISATFSIISQCRALSCFPRVKIMHTS 182 (546)
Q Consensus 105 P~LilnY~GQ--gA~ll~~p~~~~npFf~~~P~~~~~p~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~i~hTS 182 (546)
|-|++|.+|+ .|+++++=|+.-+-+ .-=.++.|+ ++-++.-.+||+.. ++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~---~~La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAV---TALAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTT---TSCCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 3444444444 455665433322211 112246666 56788888999874 888999999643211 11
Q ss_pred CccCCcccchhhHHHHHHHhhheeEEecCchhHHhhhhhhhhhHHHHHHHHHH
Q 009010 183 NQIHGQIYIPEMNWILMIFCLGVVVGFRDTDMIANAYGLAVITVMFVTTCLMF 235 (546)
Q Consensus 183 ~~~~GQIYiP~vNwlL~~~~l~vvl~F~~S~~l~~AYGiAVt~~M~iTT~L~~ 235 (546)
+...-++.+..+|=+.+...+.....+.....++.+=|++...+|.+.+++=.
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~ 131 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGA 131 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345678888887776666655555666666666666666666666665543
No 2
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=21.63 E-value=12 Score=32.48 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=6.6
Q ss_pred cCCcceeeecCHH
Q 009010 41 RWNPGVVRALSPY 53 (546)
Q Consensus 41 ~~~P~Vl~AlnP~ 53 (546)
+|||+||+|+||.
T Consensus 40 KYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 40 VYDPKVLMAVDPE 52 (162)
T ss_dssp ECCTTTEEEECTT
T ss_pred eeCHHHhcccccC
Confidence 3455555555554
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=18.34 E-value=16 Score=26.44 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHhhccccchhccccccccccchhcccccchhHHHHHHH
Q 009010 105 PCLILAYMGEAAFYTKHKEDLERSFFKAIPEAVFWPVFIIAT 146 (546)
Q Consensus 105 P~LilnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~vlAt 146 (546)
-++++--++=+.|+.++.... .-|.++|+.+.|-.+.+.|
T Consensus 15 ~~i~i~~~s~~~y~~E~~~~~--~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERGAPG--AQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHTTSTT--CCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCC--ccccccchhhhhheeeeec
Confidence 344444456666777765433 3489999999998776554
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.33 E-value=42 Score=20.25 Aligned_cols=20 Identities=25% Similarity=0.674 Sum_probs=13.7
Q ss_pred ccHHHHHHHHHhhhhhhhhh
Q 009010 275 GWLPLVFSLVTLSIMCIWQY 294 (546)
Q Consensus 275 GW~pl~ia~i~~~iM~~W~~ 294 (546)
||+.|+.-.--..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 67777776666666777743
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=10.59 E-value=10 Score=25.16 Aligned_cols=20 Identities=25% Similarity=0.765 Sum_probs=15.5
Q ss_pred cccchhhHHHHHHHhhheeE
Q 009010 188 QIYIPEMNWILMIFCLGVVV 207 (546)
Q Consensus 188 QIYiP~vNwlL~~~~l~vvl 207 (546)
-|.||.|-|++-+.++.+..
T Consensus 12 wI~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 12 WIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 37899999998887766543
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.54 E-value=1.2e+02 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=21.0
Q ss_pred CceEEEEEecCCCccEEEEEEEeeee
Q 009010 373 NQQFHVSRIGPQEFHFFHCIVRYGYK 398 (546)
Q Consensus 373 ~eR~~v~~l~~~~~g~~rv~~ryGf~ 398 (546)
+..+.+..+...+.|.|+|+++..+-
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999987664
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.65 E-value=1.2e+02 Score=20.87 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHH-HHHHhcchhH
Q 009010 227 MFVTTCLMFLII-VMVWKRKVLV 248 (546)
Q Consensus 227 M~iTT~L~~~v~-~~~w~~~~~~ 248 (546)
|+++++|+.+.. ...|+|..+.
T Consensus 14 ~~i~s~l~~~~~y~KR~kWs~lK 36 (47)
T d3cx5d2 14 VIILSSLYLLSIWVKKFKWAGIK 36 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 445555544433 4456665543
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=7.71 E-value=2.6e+02 Score=26.92 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc---CccHHHHHHHHHhhhhhhhhhhHHHHHhhh
Q 009010 251 AFVVVFGSLELLYLSACLAKVHK---GGWLPLVFSLVTLSIMCIWQYGTLKKHSYE 303 (546)
Q Consensus 251 ~~~~~f~~id~~f~~anl~K~~~---GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~ 303 (546)
...++++..=+.+++.+.....| ++ +.+.+.+.+-++...|.||.++..+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~di 432 (509)
T d2a65a1 378 TAAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEEI 432 (509)
T ss_dssp HHHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred eeEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHHH
Confidence 33444444444444433333322 34 566777788889999999998876644
No 9
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=6.07 E-value=1.5e+02 Score=22.26 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHhccCcc
Q 009010 505 SYLKKFVINIVYGFLRRNCRRPA 527 (546)
Q Consensus 505 ~~~kki~i~~lF~fL~rN~r~~~ 527 (546)
.|+.++.+|.+..++||+.|.+.
T Consensus 74 ~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 74 TWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
No 10
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.56 E-value=2.2e+02 Score=20.23 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred ceEEEEEEEeeecccccCCCceEEEEEecCCCccEEEEEEE
Q 009010 354 HQILIFVTLQSLTVPYVPLNQQFHVSRIGPQEFHFFHCIVR 394 (546)
Q Consensus 354 he~~vfl~i~~~~vP~V~~~eR~~v~~l~~~~~g~~rv~~r 394 (546)
.+..|+-.=......+...+..+.+..+...+.|.|+|++.
T Consensus 35 p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 35 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEE
Done!