BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009011
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 348 KAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN---------EIFEDMK 398
K + EAL++Y++ + + Y+ L+++ S A +++ +IF+ M
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 399 KQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454
VVPN T+ A A+ + E A ++++M+ +P +Y P L CRK
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN---------EIFEDMKKQGVVP 404
EAL++Y++ + + Y+ L+++ S A +++ +IF+ VVP
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXIVDKVVP 103
Query: 405 NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454
N T+ A A+ + E A +++ + +P +Y P L CRK
Sbjct: 104 NEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRK 153
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMF-------QQGFSPDVVSYTCFIEHYCRE-K 315
L+ ++N ++ GW + Q A KE+ G +PD++SY ++ R+ +
Sbjct: 163 LTLDMYNAVMLGWAR-------QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS 375
D ++ L++M ++G K + +++ +A + KV LP S
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 376 SLIF-ILSKAGRV 387
L+ + +K GRV
Sbjct: 276 KLLRDVYAKDGRV 288
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 24/96 (25%)
Query: 113 KVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLG 172
K V AL G G S +++ + R SN + W+K + P +Y T+
Sbjct: 21 KHVVALTGSGTSAESNI--PSFRGSSNSI--------WSK------YDPRIYGTIWGFWK 64
Query: 173 KSKKFCLMWELVKEMD-----ELNNGYVSLATMSTI 203
+K +WE+++++ E+NNG+V+L+T+ ++
Sbjct: 65 YPEK---IWEVIRDISSDYEIEINNGHVALSTLESL 97
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
SN++ +Q + AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 SNAMADQLTEEQIAEFKEAFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 57
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 58 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 100
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 66 IPSLAGWVESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSV 125
+ S+ G + R + + + S + + +++++KI+ K K V AL G G S
Sbjct: 4 MASMTGGQQMGRGSMGNLMISFLKKDTQSITLEELAKIIKKC-----KHVVALTGSGTSA 58
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
+++ + R SN + W+K + P +Y T+ +K +WE+++
Sbjct: 59 ESNI--PSFRGSSNSI--------WSK------YDPRIYGTIWGFWKYPEK---IWEVIR 99
Query: 186 EMD-----ELNNGYVSLATMSTI 203
++ E+NNG+V+L+T+ ++
Sbjct: 100 DISSDYEIEINNGHVALSTLESL 122
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
S+++ L E+ + F AF F K G + T E+ T++ LG++ + ++
Sbjct: 1 SMADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDM 53
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 98
>pdb|2L9B|A Chain A, Heterodimer Between Rna14p Monkeytail Domain And Rna15p
Hinge Domain Of The Yeast Cf Ia Complex
Length = 109
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 405 NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451
N+ T MISS A+ +E LK LQK +E + E A LL++C
Sbjct: 34 NMTTPAMMISSELAKKPKEVQLKFLQKFQE-WTRAHPEDAASLLELC 79
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLAT 199
+ AF F K G + T E+ T++ LG++ + +++ E+D NG +
Sbjct: 7 EFKEAFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 63
Query: 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYG 227
T+M R ++ ++ EAFR K G
Sbjct: 64 FLTMMARKMKDTDSEEIREAFRVFDKDG 91
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 118 LKGCGVSVSNSLVEQTLRRFSND---------LTPAFGFFTWAKTQTGYMHTPEMYNTMV 168
LKG G +++ L S D AF F K G + T E+ T++
Sbjct: 247 LKGIGFKEDGNILGHKLEYNSRDQLTEEQIAEFKEAFSLFD--KDGDGTITTKEL-GTVM 303
Query: 169 DVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
LG++ + +++ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 304 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 363
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|1EBO|A Chain A, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|B Chain B, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|C Chain C, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|D Chain D, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|E Chain E, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
pdb|1EBO|F Chain F, Crystal Structure Of The Ebola Virus Membrane-Fusion
Subunit, Gp2, From The Envelope Glycoprotein Ectodomain
Length = 131
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 98 DKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQ 154
DKI +ILSK Y +++ K G ++ L+E LR+ +N+ T A F A T+
Sbjct: 6 DKIEEILSKIYHIENEIARIKKLIG--EADGLIE-GLRQLANETTQALQLFLRATTE 59
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
+ + L E+ + F AF F K G + T E+ T++ LG++ + ++
Sbjct: 266 NTRDQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDM 318
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 319 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 363
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 2 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 54
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 55 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 53
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 53
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV 184
+++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 MADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMI 53
Query: 185 KEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 NEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 53
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 53
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 53
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 7 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 59
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 60 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 102
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 53
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 78 LNEKSRISSRVLSEN-HETDVDKISKILSKQYQSPDKVVEALKGCG----VSVSNSLVEQ 132
L E+ I R +SE E DVD + + + DK EALKG G V + + V++
Sbjct: 162 LIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQE 221
Query: 133 TLRRFSNDLTPAFGFFTWAKTQTGYMHTPE 162
TL++ P W Y PE
Sbjct: 222 TLKKLQE--LPFIRIEVWESLFRPYKPVPE 249
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
+ + L E+ + F AF F K G + T E+ T++ LG++ + ++
Sbjct: 263 NTRDQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDM 315
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 316 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 360
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185
++ L E+ + F AF F K G + T E+ T++ LG++ + +++
Sbjct: 1 ADQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMIN 53
Query: 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG 227
E+D NG + T+M R ++ ++ EAFR K G
Sbjct: 54 EVDADGNGTIDFPEFLTMMARKMKDSE-EEIREAFRVFDKDG 94
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 127 NSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKE 186
+ L E+ + F AF F K G + T E+ T++ LG++ + +++ E
Sbjct: 1 DQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMINE 53
Query: 187 MDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 95
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
+ + L E+ + F AF F K G + T E+ T++ LG++ + ++
Sbjct: 300 NTRDQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDM 352
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 353 INEVDADGNGTIDFPEFLTMMARWMKDTDSEEEIREAFRVFDKDG 397
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 127 NSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKE 186
+ L E+ + F + F + K TG + T E+ T++ LG++ + +L+ E
Sbjct: 2 SELTEEQIAEFKD------AFVQFDKEGTGKIATREL-GTLMRTLGQNPTEAELQDLIAE 54
Query: 187 MDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ NNG ++ IM + +R ++ + EAF+ + G
Sbjct: 55 AENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDG 96
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 129 LVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD 188
L E+ + F AF F K G + T E+ T++ LG++ + +++ E+D
Sbjct: 1 LTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMINEVD 53
Query: 189 ELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
NG + T+M R ++ ++ + EAFR K G
Sbjct: 54 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 93
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 129 LVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD 188
L E+ + F AF F K G + T E+ T++ LG++ + +++ E+D
Sbjct: 2 LTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMINEVD 54
Query: 189 ELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
NG + T+M R ++ ++ + EAFR K G
Sbjct: 55 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 94
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
+ + L E+ + F AF F K G + T E+ T++ LG++ + ++
Sbjct: 300 NTRDQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDM 352
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 353 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 397
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
+ + L E+ + F AF F K G + T E+ T++ LG++ + ++
Sbjct: 300 NTRDQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDM 352
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 353 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 397
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
+ + L E+ + F AF F K G + T E+ T++ LG++ + ++
Sbjct: 301 NTRDQLTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDM 353
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
+ E+D NG + T+M R ++ ++ + EAFR K G
Sbjct: 354 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 398
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 129 LVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD 188
L E+ + F AF F K G + T E+ T++ LG++ + +++ E+D
Sbjct: 2 LTEEQIAEFKE----AFSLFD--KDGDGTITTKEL-GTVMRSLGQNPTEAELQDMINEVD 54
Query: 189 ELNNGYVSLATMSTIMRRLVRGGRYDDAV-EAFRGMKKYG 227
NG + T+M R ++ ++ + EAFR K G
Sbjct: 55 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,678,198
Number of Sequences: 62578
Number of extensions: 560932
Number of successful extensions: 1482
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 79
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)