BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009011
(546 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/553 (54%), Positives = 379/553 (68%), Gaps = 22/553 (3%)
Query: 1 MLPKHNILKLLSQSHLQKHAKIYYLCYLSCNPLCTTAESP-SSTESPSLPSWIKFFDSQS 59
ML K I KL+S + ++ I+ +L N T ESP + ESP LPSWIK F S
Sbjct: 1 MLTKLRISKLVSYTLPRR---IFQRRFLVTNN--TAEESPIVAAESPELPSWIKDFLSNK 55
Query: 60 P----------DEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQ 109
P DEDFVIPSLA WVES + + + V+ + E D+DK+ L+K+
Sbjct: 56 PSSSSSSVSKDDEDFVIPSLANWVESQKFSRQQVSEGNVVKKPVE-DIDKVCDFLNKKDT 114
Query: 110 SPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVD 169
S + VV+ L C V V+ SLV Q LRRFSN A+GFF WA +QTGY+H+ YN MVD
Sbjct: 115 SHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVD 174
Query: 170 VLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK-YG 227
VLGK + F LMWELV EM++ V+L TMS +MRRL + G+Y+ AV+AF M+K YG
Sbjct: 175 VLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYG 234
Query: 228 VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287
V+ DT A++ LMD LVK NS+EHA++VFL+ D I ++ FNILIHG+CK RK DDA+
Sbjct: 235 VKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARA 294
Query: 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG 347
M M F+PDVV+YT F+E YC+E DFR+V++ L+EM+E GC P+V+TYTIVMH+LG
Sbjct: 295 MMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLG 354
Query: 348 KAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL 407
K+KQ+ EAL VYEKMK D C+PD FYSSLI ILSK GR KDA EIFEDM QGV +VL
Sbjct: 355 KSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVL 414
Query: 408 TYNTMISSACARSEEENALKLLQKMEE---DLCKPDCETYAPLLKMCCRKKRMKVLNFLL 464
YNTMIS+A S +E AL+LL++ME+ + C P+ ETYAPLLKMCC KK+MK+L LL
Sbjct: 415 VYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILL 474
Query: 465 THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
HM KNDVS+D TY L+RGL SGK+E AC FFEE + KG+VP ST KML ++LEKK
Sbjct: 475 HHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVDELEKK 534
Query: 525 RLGNAKERINKLL 537
+ AK +I L+
Sbjct: 535 NMAEAKLKIQSLV 547
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 9/207 (4%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATM-STIMRRLVRGGRYDDAVEAFRG 222
Y ++ LGKSK+ + ++M E +G V A S+++ L + GR+ DA E F
Sbjct: 346 YTIVMHSLGKSKQVAEALGVYEKMKE--DGCVPDAKFYSSLIHILSKTGRFKDAAEIFED 403
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-----CIPLSSQIFNILIHGWC 277
M GV +D + ++ + + E A ++ +D C P + + + L+ C
Sbjct: 404 MTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSP-NVETYAPLLKMCC 462
Query: 278 KTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVI 337
+K+ + M + S DV +Y I C + +E KG P
Sbjct: 463 HKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDS 522
Query: 338 TYTIVMHALGKAKQINEALKVYEKMKS 364
T +++ L K LK+ ++S
Sbjct: 523 TCKMLVDELEKKNMAEAKLKIQSLVQS 549
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 315 bits (806), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 167/422 (39%), Positives = 257/422 (60%), Gaps = 5/422 (1%)
Query: 123 VSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWE 182
V++S+ LV + L RF +D A G WA++ G+ H+ + Y+ VD+LGK+KK+ M E
Sbjct: 83 VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142
Query: 183 LVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242
V+ M + V+L T++ IMRR G +++AV F + ++G+EK+T ++++L+DTL
Sbjct: 143 FVERMR--GDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 200
Query: 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV 302
K VE A V L+ K I ++ FNI IHGWCK +V++A ++EM GF P V+
Sbjct: 201 CKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVI 260
Query: 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362
SYT I YC++ +F KV + L EM+ G P+ ITYT +M +L K+ EAL+V +M
Sbjct: 261 SYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRM 320
Query: 363 KSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE-DMKKQGVVPNVLTYNTMISSACARSE 421
K C PD+ FY+ LI L++AGR+++A +F +M + GV N TYN+MI+ C E
Sbjct: 321 KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDE 380
Query: 422 EENALKLLQKME-EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF-KNDVSMDAGTY 479
E+ A++LL++ME +LC PD TY PLL+ C ++ + + LL M K+ +S+D TY
Sbjct: 381 EDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTY 440
Query: 480 ASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539
L++ L + E A FEEMIS+ I P H T +L E+++KK + + ERI ++
Sbjct: 441 TFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERIEHIMKT 500
Query: 540 AK 541
K
Sbjct: 501 VK 502
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 236/447 (52%), Gaps = 6/447 (1%)
Query: 81 KSRISSRVLSENHET-DVDKISKILSKQYQSPDKVV--EALKGCGVSVSNSLVEQTLRRF 137
KS +S+R+ S + + DV ++K +SK S ++V AL G+ VS +VE L RF
Sbjct: 51 KSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRF 110
Query: 138 SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL 197
N + FF W++ Q Y H+ Y+ M++ K +++ LMW+L+ M + +++
Sbjct: 111 RNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK--KKMLNV 168
Query: 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE 257
T +MR+ R + D+A+ AF M+KY + + A + L+ L K +V A +VF
Sbjct: 169 ETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFEN 228
Query: 258 FKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317
+D S+ ++IL+ GW K + A++ +EM G PD+V+Y+ ++ C+
Sbjct: 229 MRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRV 288
Query: 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377
+ ++ M CKP+ Y++++H G ++ EA+ + +M+ D + ++SL
Sbjct: 289 DEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSL 348
Query: 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437
I KA R+K+ + ++MK +GV PN + N ++ R E++ A + +KM + +C
Sbjct: 349 IGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VC 407
Query: 438 KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497
+PD +TY ++KM C KK M+ + + +M K V T++ L+ GL E + AC
Sbjct: 408 EPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACV 467
Query: 498 FFEEMISKGIVPYHSTYKMLEEKLEKK 524
EEMI GI P T+ L + L K+
Sbjct: 468 LLEEMIEMGIRPSGVTFGRLRQLLIKE 494
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 9/288 (3%)
Query: 160 TPE--MYNTMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDA 216
TP+ Y+ +++ GK E+ +EM ++ G + + T S ++ L + GR D+A
Sbjct: 234 TPDSKTYSILLEGWGKEPNLPKAREVFREM--IDAGCHPDIVTYSIMVDILCKAGRVDEA 291
Query: 217 VEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNILIHG 275
+ R M + T SVL+ T N +E A FLE + + +FN LI
Sbjct: 292 LGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGA 351
Query: 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS 335
+CK ++ + + +KEM +G +P+ S + H + + D ++M K C+P
Sbjct: 352 FCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI-KVCEPD 410
Query: 336 VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395
TYT+V+ + K++ A KV++ M+ P +S LI L + + A + E
Sbjct: 411 ADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLE 470
Query: 396 DMKKQGVVPNVLTYNTMISSACARSEEENALKLL-QKMEEDLCKPDCE 442
+M + G+ P+ +T+ + + E E+ LK L +KM + +P C+
Sbjct: 471 EMIEMGIRPSGVTFGRL-RQLLIKEEREDVLKFLNEKMNVLVNEPLCD 517
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 225/442 (50%), Gaps = 3/442 (0%)
Query: 83 RISSRVLSENHETD-VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDL 141
RI S +L + D V++IS++LS D + L VS++LVEQ L+R N
Sbjct: 23 RIFSTLLHDPPSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLG 82
Query: 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS 201
PA FF WA+ + H+ E Y+ +V++LG SK+F L+W+ + E E N +S
Sbjct: 83 FPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFW 142
Query: 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD- 260
+ R R +A AF M ++G++ L L+ +L V HA + F + K
Sbjct: 143 IVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGF 202
Query: 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320
I S++ ++IL+ GW + R A+K EM ++ D+++Y ++ C+ D
Sbjct: 203 GIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGG 262
Query: 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380
+EM G KP ++ I +HA A ++ A KV ++MK D +P+ ++ +I
Sbjct: 263 YKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKT 322
Query: 381 LSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440
L K +V DA + ++M ++G P+ TYN++++ C E A KLL +M+ C PD
Sbjct: 323 LCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPD 382
Query: 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI-ESGKLELACSFF 499
TY +LK+ R R + M + TY ++ GL+ + GKLE AC +F
Sbjct: 383 RHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYF 442
Query: 500 EEMISKGIVPYHSTYKMLEEKL 521
E MI +GI PY +T +ML +L
Sbjct: 443 EMMIDEGIPPYSTTVEMLRNRL 464
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 6/290 (2%)
Query: 147 FFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR 206
FF AK G + + + Y+ +V + + ++ EM E N V L + ++
Sbjct: 195 FFGKAKG-FGIVPSAKTYSILVRGWARIRDASGARKVFDEMLE-RNCVVDLLAYNALLDA 252
Query: 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFK--DCIPL 264
L + G D + F+ M G++ D + ++ + V AYKV K D +P
Sbjct: 253 LCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVP- 311
Query: 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324
+ FN +I CK KVDDA + EM Q+G +PD +Y + ++C + + L
Sbjct: 312 NVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLL 371
Query: 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF-ILSK 383
M C P TY +V+ L + + + A +++E M P + Y+ +I ++ K
Sbjct: 372 SRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRK 431
Query: 384 AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
G++++A FE M +G+ P T + + + + L KME
Sbjct: 432 KGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKME 481
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 229/437 (52%), Gaps = 7/437 (1%)
Query: 88 VLSENHE----TDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTP 143
V E HE +V+KI +IL + K+ AL G+ + L+ + L R +
Sbjct: 54 VCPEKHEDEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNL 113
Query: 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203
+ FF WA Q GY H+ E+ +MV +L K ++F +W L++EM + N + +
Sbjct: 114 GYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVL 173
Query: 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP 263
MRR AVE M KYG+E D L+D L K SV+ A KVF + ++ P
Sbjct: 174 MRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFP 233
Query: 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323
+ + F L++GWC+ K+ +A++ + +M + G PD+V +T + Y D
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293
Query: 324 LKEMQEKGCKPSVITYTIVMHALGKA-KQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
+ +M+++G +P+V YT+++ AL + K+++EA++V+ +M+ C D Y++LI
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFC 353
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
K G + + +DM+K+GV+P+ +TY ++ + + + E L+L++KM+ C PD
Sbjct: 354 KWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLL 413
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
Y ++++ C+ +K L M N +S T+ ++ G G L AC+ F+EM
Sbjct: 414 IYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEM 473
Query: 503 ISKGI--VPYHSTYKML 517
+S+GI P + T K L
Sbjct: 474 VSRGIFSAPQYGTLKSL 490
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 41/332 (12%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
+L ++++ R G+ +A E MK+ G+E D + L+ + AY +
Sbjct: 235 NLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLM 294
Query: 256 LEF-KDCIPLSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
+ K + + +LI C+T +++D+A + EM + G D+V+YT I +C+
Sbjct: 295 NDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCK 354
Query: 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373
K L +M++KG PS +TY +M A K +Q E L++ EKMK C PD
Sbjct: 355 WGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLI 414
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISS---------ACARSEEEN 424
Y+ +I + K G VK+A ++ +M+ G+ P V T+ MI+ AC +E
Sbjct: 415 YNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMV 474
Query: 425 ALKLLQ--------------------KMEEDL----------CKPDCETYAPLLKMCCRK 454
+ + +M +D+ C+ + + + K
Sbjct: 475 SRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAK 534
Query: 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486
+K M + D+ TYA L++GL
Sbjct: 535 GHVKEACSYCLDMMEMDLMPQPNTYAKLMKGL 566
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 113/231 (48%), Gaps = 5/231 (2%)
Query: 298 SPDVVS---YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354
+P+++ + + + +K + L EM + G +P + ++ AL K + E
Sbjct: 161 NPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKE 220
Query: 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMIS 414
A KV+E M+ + P+ +++SL++ + G++ +A E+ MK+ G+ P+++ + ++S
Sbjct: 221 ASKVFEDMR-EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLS 279
Query: 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR-KKRMKVLNFLLTHMFKNDVS 473
+ +A L+ M + +P+ Y L++ CR +KRM + M +
Sbjct: 280 GYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCE 339
Query: 474 MDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
D TY +L+ G + G ++ S ++M KG++P TY + EKK
Sbjct: 340 ADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKK 390
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 92/263 (34%), Gaps = 75/263 (28%)
Query: 212 RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF---------------- 255
R D+A+ F M++YG E D + L+ K ++ Y V
Sbjct: 322 RMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYM 381
Query: 256 ---------LEFKDCIPLSSQ-----------IFNILIHGWCKTRKVDDAQKAMKEMFQQ 295
+F++C+ L + I+N++I CK +V +A + EM
Sbjct: 382 QIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441
Query: 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG------------------------ 331
G SP V ++ I + + + + KEM +G
Sbjct: 442 GLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLE 501
Query: 332 ---------------CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
C+ +V +TI +HAL + EA M D +P + Y+
Sbjct: 502 MAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPNTYAK 561
Query: 377 LIFILSKAGRVKDANEIFEDMKK 399
L+ L+K A EI E + K
Sbjct: 562 LMKGLNKLYNRTIAAEITEKVVK 584
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/440 (29%), Positives = 231/440 (52%), Gaps = 3/440 (0%)
Query: 95 TDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQ 154
+DV+K +IL K + K+ AL GV + L+E+ L R + + FF WA Q
Sbjct: 81 SDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQ 140
Query: 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYD 214
Y H+ E+Y +MV +L K ++F +W L++EM + N + +++R
Sbjct: 141 PRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVK 200
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274
A+E M K+G E D L+D L K SV+ A K+F + + P++ + F L++
Sbjct: 201 KAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLY 260
Query: 275 GWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP 334
GWC+ K+ +A+ + +M + GF PD+V YT + Y D L++M+ +G +P
Sbjct: 261 GWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEP 320
Query: 335 SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIF 394
+ YT+++ AL K ++ EA+KV+ +M+ +C D Y++L+ K G++ +
Sbjct: 321 NANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVL 380
Query: 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454
+DM K+G++P+ LTY ++ + + E L+L++KM + PD Y ++++ C+
Sbjct: 381 DDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKL 440
Query: 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI--VPYHS 512
+K L M +N +S T+ ++ GL G L A F+EM+++G+ V +
Sbjct: 441 GEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYG 500
Query: 513 TYK-MLEEKLEKKRLGNAKE 531
T K +L L+ K+L AK+
Sbjct: 501 TLKLLLNTVLKDKKLEMAKD 520
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/310 (19%), Positives = 114/310 (36%), Gaps = 77/310 (24%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIM-RRLVRGGRYDDAVEAFRG 222
Y ++ + K ++L+++M G+ A T++ + L + R ++A++ F
Sbjct: 290 YTNLLSGYANAGKMADAYDLLRDMR--RRGFEPNANCYTVLIQALCKVDRMEEAMKVFVE 347
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE------------------------- 257
M++Y E D + L+ K ++ Y V +
Sbjct: 348 MERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKES 407
Query: 258 FKDCIPLSSQ-----------IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306
F++C+ L + I+N++I CK +V +A + EM + G SP V ++
Sbjct: 408 FEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVI 467
Query: 307 FIEHYCREKDFRKVDDTLKEMQEKG----------------------------------- 331
I + + D KEM +G
Sbjct: 468 MINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITS 527
Query: 332 ---CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVK 388
C+ +V+++TI +HAL EA +M D +P ++ L+ L K +
Sbjct: 528 KGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLKKLYNRE 587
Query: 389 DANEIFEDMK 398
A EI E ++
Sbjct: 588 FAGEITEKVR 597
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/441 (29%), Positives = 230/441 (52%), Gaps = 8/441 (1%)
Query: 82 SRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDL 141
S + ++V + + D ++I KIL+K S KV L V +S +L+E+ L++ SN
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDS--KVETLLNEASVKLSPALIEEVLKKLSNAG 108
Query: 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS 201
A F WA+ Q G+ HT YN +++ LGK K+F L+W LV +M +S T +
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKA--KKLLSKETFA 166
Query: 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KD 260
I RR R + +A+ AF M+++G + ++ + ++DTL K +V A KVF + K
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226
Query: 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320
+ + IL+ GW + + + +EM +GF PDVV+Y I +C+ K + +
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286
Query: 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380
EM+++ CKPS + +++ LG K++N+AL+ +E+ KS + Y++L+
Sbjct: 287 IRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346
Query: 381 LSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440
+ R++DA + ++M+ +GV PN TY+ ++ + A ++ Q M C+P
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS---CEPT 403
Query: 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500
TY +++M C K+R+ + + M V ++SL+ L KL+ AC +F
Sbjct: 404 VSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN 463
Query: 501 EMISKGIVPYHSTYKMLEEKL 521
EM+ GI P + L++ L
Sbjct: 464 EMLDVGIRPPGHMFSRLKQTL 484
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 126/272 (46%), Gaps = 7/272 (2%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFRG 222
Y +++ G+ + E+ +EM + G+ + I+ + +Y++A+ F
Sbjct: 235 YTILLEGWGQELNLLRVDEVNREMKD--EGFEPDVVAYGIIINAHCKAKKYEEAIRFFNE 292
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC-IPLSSQIFNILIHGWCKTRK 281
M++ + L++ L + A + F K PL + +N L+ +C +++
Sbjct: 293 MEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQR 352
Query: 282 VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI 341
++DA K + EM +G P+ +Y + H R ++ + + Q C+P+V TY I
Sbjct: 353 MEDAYKTVDEMRLKGVGPNARTYDIILHHLIR---MQRSKEAYEVYQTMSCEPTVSTYEI 409
Query: 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG 401
++ ++++ A+K++++MK LP +SSLI L ++ +A E F +M G
Sbjct: 410 MVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVG 469
Query: 402 VVPNVLTYNTMISSACARSEEENALKLLQKME 433
+ P ++ + + ++ L+ KM+
Sbjct: 470 IRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMD 501
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 215 bits (547), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 241/472 (51%), Gaps = 16/472 (3%)
Query: 84 ISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTP 143
IS ++SE DV KISK++ ++ L+ C V SN LV + L R ND
Sbjct: 88 ISDELVSE----DVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWET 143
Query: 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203
AF FF WA Q GY+ + Y++M+ +LGK +KF W L+ EM + + V+ T+ +
Sbjct: 144 AFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIM 203
Query: 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP 263
+R+ A+ F K++ +E L+ L + +V A + KD P
Sbjct: 204 IRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYP 263
Query: 264 LSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322
++ FNI+++GWC +A++ EM G DVVSY+ I Y + KV
Sbjct: 264 FDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLK 323
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFIL 381
M+++ +P Y V+HAL KA ++EA + + M+ + + P+ Y+SLI L
Sbjct: 324 LFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPL 383
Query: 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441
KA + ++A ++F++M ++G+ P + TY+ + R+ EE +LL KM + C+P
Sbjct: 384 CKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR--ILRTGEE-VFELLAKMRKMGCEPTV 440
Query: 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEE 501
ETY L++ CR + + L M + V D +Y ++ GL +GK+E A +++E
Sbjct: 441 ETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKE 500
Query: 502 MISKGIVPYHSTYKMLE-----EKLEKKRLGNAKERINK--LLAHAKEQKTF 546
M KG+ P + M++ ++ ++R+ ++K +NK ++ ++ +K F
Sbjct: 501 MKDKGMRPNENVEDMIQSWFSGKQYAEQRITDSKGEVNKGAIVKKSEREKNF 552
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 224/439 (51%), Gaps = 17/439 (3%)
Query: 95 TDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQ 154
+D + IS++L + + +L+ G+S++ +L+ QTL R ++ A FF + ++
Sbjct: 39 SDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSL 98
Query: 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYD 214
TP +N ++D+LG+ ++F ++ +L+ EMD+ S T +++RL+ G
Sbjct: 99 PSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQ-----TSPETFLILVKRLIAAGLTR 153
Query: 215 DAVEAFRGMKKYGVEKDTRAL--SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272
AV AF + + R + L+DTL K + A VF E K+ +++ IL
Sbjct: 154 QAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTIL 213
Query: 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----------EKDFRKVDD 322
I GWCK R++D A+K + EM + G P+VV+Y + CR E++ R +
Sbjct: 214 IAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEK 273
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
EM+++G +P V +++IV+H +A + L + MK+ P Y+S++ L
Sbjct: 274 VFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLC 333
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
GR+++A E+ E M + G+ P+ TYN R + A+ L +KM+ LCKP +
Sbjct: 334 SCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQ 393
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
TY LL +M+ + + + ++ D +Y SLV GL K + AC +F EM
Sbjct: 394 TYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEM 453
Query: 503 ISKGIVPYHSTYKMLEEKL 521
I +G +P T++ L + L
Sbjct: 454 IERGFLPQKLTFETLYKGL 472
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 113/225 (50%), Gaps = 7/225 (3%)
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY-KVFLEFKDCIPLSSQIFNILI 273
+A + F M++ G+E D + S+++ + + E K+ L I + + + ++
Sbjct: 270 NAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVV 329
Query: 274 HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333
C ++++A++ ++ M + G SP +Y CF + Y KD + ++M+ CK
Sbjct: 330 KCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCK 389
Query: 334 PSVITYTIVMHA---LGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390
PS TY +++ LGK + + E +++ +K+ + PD Y+SL+ L + K+A
Sbjct: 390 PSTQTYNVLLGTFINLGKMETVKE---IWDDLKASETGPDLDSYTSLVHGLCSKEKWKEA 446
Query: 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435
F +M ++G +P LT+ T+ ++ +L +K++E+
Sbjct: 447 CGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDEE 491
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 217/438 (49%), Gaps = 8/438 (1%)
Query: 73 VESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQ 132
VES N++ S V S + +V+++ K++ + + + L + +S+ L+ +
Sbjct: 107 VESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVE 166
Query: 133 TLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN 192
L RF + PAF FF WA + G+ H YN+M+ +L K+++F M +++EM
Sbjct: 167 VLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMG--TK 224
Query: 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252
G +++ T + M+ AV F MKKY + ++ L+D+L + + A
Sbjct: 225 GLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 284
Query: 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312
+F + K+ + + +L++GWC+ R + +A + +M QG PD+V++ +E
Sbjct: 285 VLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLL 344
Query: 313 REKDFRKVDDTLK---EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
R RK D +K M+ KG P+V +YTI++ K + A++ ++ M P
Sbjct: 345 RS---RKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQP 401
Query: 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429
D + Y+ LI ++ E+ ++M+++G P+ TYN +I + E+A ++
Sbjct: 402 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIY 461
Query: 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES 489
KM ++ +P T+ ++K + ++ + M K + D +Y L+RGLI
Sbjct: 462 NKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGE 521
Query: 490 GKLELACSFFEEMISKGI 507
GK AC + EEM+ KG+
Sbjct: 522 GKSREACRYLEEMLDKGM 539
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 132/278 (47%), Gaps = 3/278 (1%)
Query: 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325
S+ +N ++ KTR+ + ++EM +G + ++T ++ + K+ +K +
Sbjct: 195 SRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLT-METFTIAMKAFAAAKERKKAVGIFE 253
Query: 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385
M++ K V T ++ +LG+AK EA +++K+K + P+ Y+ L+ +
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK-ERFTPNMMTYTVLLNGWCRVR 312
Query: 386 RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYA 445
+ +A I+ DM QG+ P+++ +N M+ ++ +A+KL M+ P+ +Y
Sbjct: 313 NLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYT 372
Query: 446 PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505
+++ C++ M+ M + + DA Y L+ G KL+ +EM K
Sbjct: 373 IMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEK 432
Query: 506 GIVPYHSTYKMLEEKLEKKRLGNAKERI-NKLLAHAKE 542
G P TY L + + +++ RI NK++ + E
Sbjct: 433 GHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIE 470
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 104/215 (48%), Gaps = 1/215 (0%)
Query: 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFL 256
+ + ++ L+R + DA++ F MK G + R+ ++++ K +S+E A + F
Sbjct: 333 IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFD 392
Query: 257 EFKDC-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315
+ D + + ++ LI G+ +K+D + +KEM ++G PD +Y I+ +K
Sbjct: 393 DMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQK 452
Query: 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS 375
+M + +PS+ T+ ++M + A+ V+E+M PD + Y+
Sbjct: 453 MPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYT 512
Query: 376 SLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
LI L G+ ++A E+M +G+ ++ YN
Sbjct: 513 VLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYN 547
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 195/391 (49%), Gaps = 5/391 (1%)
Query: 128 SLVEQTLRRFSNDLTPAFGFFTWAKTQ-TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKE 186
+LV L+R N A FF + Y+H ++ +D+ + +W L+
Sbjct: 57 NLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHR 116
Query: 187 MDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246
M L G S T + + R G+ D AV+ F M ++G +D + + ++D L K
Sbjct: 117 MRSLRIG-PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSK 175
Query: 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306
VE AY++F + + + +N++++GWC ++ A + +KEM ++G +P++ +Y
Sbjct: 176 RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNT 235
Query: 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
++ + R R + EM+++ C+ V+TYT V+H G A +I A V+++M +
Sbjct: 236 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG 295
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426
LP + Y+++I +L K V++A +FE+M ++G PNV TYN +I E
Sbjct: 296 VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE 355
Query: 427 KLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486
+L+Q+ME + C+P+ +TY +++ ++ L M D + TY L+ G+
Sbjct: 356 ELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGM 415
Query: 487 I---ESGKLELACSFFEEMISKGIVPYHSTY 514
S + +A EM+ +G +P T+
Sbjct: 416 FVRKRSEDMVVAGKLLLEMVERGFIPRKFTF 446
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 119/253 (47%), Gaps = 1/253 (0%)
Query: 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324
S + F I+ + K D A K M + G D+ S+ ++ C+ K K +
Sbjct: 125 SPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF 184
Query: 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384
+ ++ + +V TY ++++ K+ +AL+V ++M P+ + Y++++ +A
Sbjct: 185 RALRGRFSVDTV-TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRA 243
Query: 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY 444
G+++ A E F +MKK+ +V+TY T++ E + A + +M + P TY
Sbjct: 244 GQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATY 303
Query: 445 APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504
++++ C+K ++ + M + + TY L+RGL +G+ + M +
Sbjct: 304 NAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMEN 363
Query: 505 KGIVPYHSTYKML 517
+G P TY M+
Sbjct: 364 EGCEPNFQTYNMM 376
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 1/225 (0%)
Query: 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359
D S+ I+ R V + M+ PS T+ IV A + ++A+K++
Sbjct: 90 DASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLF 149
Query: 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR 419
M C D + +++++ +L K+ RV+ A E+F ++ + V V TYN +++ C
Sbjct: 150 LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILNGWCLI 208
Query: 420 SEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY 479
AL++L++M E P+ TY +LK R +++ M K D +D TY
Sbjct: 209 KRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTY 268
Query: 480 ASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
++V G +G+++ A + F+EMI +G++P +TY + + L KK
Sbjct: 269 TTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKK 313
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 195/405 (48%), Gaps = 4/405 (0%)
Query: 136 RFSNDLTPAFGFFTWAKTQTGYMH-TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY 194
R L + FF WA ++ Y H +P YN M+D+ GK ++F L W L+ M N
Sbjct: 125 RHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKS-RNVE 183
Query: 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254
+S+ T + ++RR VR G +AV F M+ YG D A S+++ L + A
Sbjct: 184 ISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSF 243
Query: 255 FLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314
F KD ++ L+ GWC+ ++ +A+K KEM G P+V +Y+ I+ CR
Sbjct: 244 FDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRC 303
Query: 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374
+ D +M + GC P+ IT+ +M KA + + L+VY +MK C PDT Y
Sbjct: 304 GQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITY 363
Query: 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434
+ LI + +++A ++ M K+ N T+NT+ + + A ++ KM E
Sbjct: 364 NFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMME 423
Query: 435 DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL 494
C+P+ TY L++M K ++ + M +V + TY LV G
Sbjct: 424 AKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNN 483
Query: 495 ACSFFEEMI-SKGIVPYHSTYKMLEEKLEKK-RLGNAKERINKLL 537
A F+EM+ K + P S Y+M+ +L + +L +E + K++
Sbjct: 484 AYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMI 528
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 1/277 (0%)
Query: 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324
S +N +I K R+ D A + M + + ++T I Y R +
Sbjct: 150 SPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCF 209
Query: 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384
M++ GC P I ++IV+ L + ++ +EA ++ +K D PD Y++L+ +A
Sbjct: 210 NRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLK-DRFEPDVIVYTNLVRGWCRA 268
Query: 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY 444
G + +A ++F++MK G+ PNV TY+ +I + C + A + M + C P+ T+
Sbjct: 269 GEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328
Query: 445 APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504
L+++ + R + + + M K D TY L+ LE A MI
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIK 388
Query: 505 KGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541
K ST+ + +EKKR N R+ + AK
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAK 425
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 7/248 (2%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLA-TMSTIMRRLVRGGRYDDAVEAFRG 222
Y+ ++D L + + ++ +M L++G A T + +MR V+ GR + ++ +
Sbjct: 293 YSIVIDALCRCGQISRAHDVFADM--LDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQ 350
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFNILIHGWCKTR 280
MKK G E DT + L++ + ++E+A KV K C +++ FN + K R
Sbjct: 351 MKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKC-EVNASTFNTIFRYIEKKR 409
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
V+ A + +M + P+ V+Y + + K V KEM +K +P+V TY
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399
+++ N A K++++M + CL P S Y ++ L +AG++K E+ E M +
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQ 529
Query: 400 QGVVPNVL 407
+G+V L
Sbjct: 530 KGLVARPL 537
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/465 (28%), Positives = 226/465 (48%), Gaps = 17/465 (3%)
Query: 94 ETDVDKISKILSKQYQSPDKVVE-ALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAK 152
+TD+ IS +L P +E AL G+ S LV R S+ F WA+
Sbjct: 67 KTDLSTISNLLENTDVVPGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAE 126
Query: 153 TQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEM---DELNNGYVSLATMSTIMRRLVR 209
+ G+ +P +++++V+ L K+++F + W LV + DE +N VS T ++RR R
Sbjct: 127 MKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSN-LVSADTFIVLIRRYAR 185
Query: 210 GGRYDDAVEAFRGMKKY----GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF------K 259
G A+ AF + Y + R L VL+D L K V A ++LE
Sbjct: 186 AGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREA-SMYLERIGGTMDS 244
Query: 260 DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319
+ +P S +IFNIL++GW ++RK+ A+K +EM P VV+Y IE YCR + +
Sbjct: 245 NWVP-SVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQI 303
Query: 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379
+ L+EM+ + + + + ++ LG+A +++EAL + E+ + P Y+SL+
Sbjct: 304 AMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVK 363
Query: 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP 439
KAG + A++I + M +GV P TYN ++ E + L K+ E P
Sbjct: 364 NFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSP 423
Query: 440 DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFF 499
D TY +LKM C ++ + + M + D T L+ L LE A F
Sbjct: 424 DRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEF 483
Query: 500 EEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQK 544
+ + +GI+P + T+KM++ L K + + +R++ L++ K
Sbjct: 484 DNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRLSSLMSSLPHSK 528
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 210/435 (48%), Gaps = 2/435 (0%)
Query: 73 VESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQ 132
VES N++ S V S + +V+++ K++ + + + L + +S+ L+ +
Sbjct: 107 VESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVE 166
Query: 133 TLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN 192
L RF + PAF FF WA + G+ H YN+M+ +L K+++F M +++EM
Sbjct: 167 VLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMG--TK 224
Query: 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252
G +++ T + M+ AV F MKKY + ++ L+D+L + + A
Sbjct: 225 GLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 284
Query: 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312
+F + K+ + + +L++GWC+ R + +A + +M G PD+V++ +E
Sbjct: 285 VLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLL 344
Query: 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTS 372
R M+ KG P+V +YTI++ K + A++ ++ M PD +
Sbjct: 345 RSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 404
Query: 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432
Y+ LI ++ E+ ++M+++G P+ TYN +I + E+ ++ KM
Sbjct: 405 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM 464
Query: 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492
++ +P T+ ++K + ++ + M K + D +Y L+RGLI GK
Sbjct: 465 IQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 524
Query: 493 ELACSFFEEMISKGI 507
AC + EEM+ KG+
Sbjct: 525 REACRYLEEMLDKGM 539
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 132/279 (47%), Gaps = 3/279 (1%)
Query: 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324
+S+ +N ++ KTR+ + ++EM +G + ++T ++ + K+ +K
Sbjct: 194 ASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLT-METFTIAMKAFAAAKERKKAVGIF 252
Query: 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384
+ M++ K V T ++ +LG+AK EA +++K+K + P+ Y+ L+ +
Sbjct: 253 ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK-ERFTPNMMTYTVLLNGWCRV 311
Query: 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY 444
+ +A I+ DM G+ P+++ +N M+ ++ +A+KL M+ P+ +Y
Sbjct: 312 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 371
Query: 445 APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504
+++ C++ M+ M + + DA Y L+ G KL+ +EM
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE 431
Query: 505 KGIVPYHSTYKMLEEKLEKKRLGNAKERI-NKLLAHAKE 542
KG P TY L + + +++ RI NK++ + E
Sbjct: 432 KGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIE 470
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 40/286 (13%)
Query: 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAF 220
E N ++D LG++K L E D+L + ++ T + ++ R +A +
Sbjct: 265 ETINCLLDSLGRAK---LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIW 321
Query: 221 RGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSS-QIFNILIHGWCKT 279
M +G++ D A +V+++ L++ A K+F K P + + + I+I +CK
Sbjct: 322 NDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQ 381
Query: 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-------- 331
++ A + +M G PD YTC I + +K V + LKEMQEKG
Sbjct: 382 SSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTY 441
Query: 332 ---------------------------CKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364
+PS+ T+ ++M + A+ V+++M
Sbjct: 442 NALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIK 501
Query: 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
PD + Y+ LI L G+ ++A E+M +G+ ++ YN
Sbjct: 502 KGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYN 547
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 210/435 (48%), Gaps = 2/435 (0%)
Query: 73 VESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQ 132
VES N++ S V S + +V+++ K++ + + + L + +S+ L+ +
Sbjct: 106 VESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVE 165
Query: 133 TLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN 192
L RF + PAF FF WA + G+ H YN+M+ +L K+++F M +++EM
Sbjct: 166 VLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMG--TK 223
Query: 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252
G +++ T + M+ AV F MKKY + ++ L+D+L + + A
Sbjct: 224 GLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 283
Query: 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312
+F + K+ + + +L++GWC+ R + +A + +M G PD+V++ +E
Sbjct: 284 VLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLL 343
Query: 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTS 372
R M+ KG P+V +YTI++ K + A++ ++ M PD +
Sbjct: 344 RSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 403
Query: 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432
Y+ LI ++ E+ ++M+++G P+ TYN +I + E+ ++ KM
Sbjct: 404 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM 463
Query: 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492
++ +P T+ ++K + ++ + M K + D +Y L+RGLI GK
Sbjct: 464 IQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 523
Query: 493 ELACSFFEEMISKGI 507
AC + EEM+ KG+
Sbjct: 524 REACRYLEEMLDKGM 538
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 131/278 (47%), Gaps = 3/278 (1%)
Query: 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325
S+ +N ++ KTR+ + ++EM +G + ++T ++ + K+ +K +
Sbjct: 194 SRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLT-METFTIAMKAFAAAKERKKAVGIFE 252
Query: 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385
M++ K V T ++ +LG+AK EA +++K+K + P+ Y+ L+ +
Sbjct: 253 LMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK-ERFTPNMMTYTVLLNGWCRVR 311
Query: 386 RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYA 445
+ +A I+ DM G+ P+++ +N M+ ++ +A+KL M+ P+ +Y
Sbjct: 312 NLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYT 371
Query: 446 PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505
+++ C++ M+ M + + DA Y L+ G KL+ +EM K
Sbjct: 372 IMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEK 431
Query: 506 GIVPYHSTYKMLEEKLEKKRLGNAKERI-NKLLAHAKE 542
G P TY L + + +++ RI NK++ + E
Sbjct: 432 GHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIE 469
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 40/286 (13%)
Query: 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAF 220
E N ++D LG++K L E D+L + ++ T + ++ R +A +
Sbjct: 264 ETINCLLDSLGRAK---LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIW 320
Query: 221 RGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSS-QIFNILIHGWCKT 279
M +G++ D A +V+++ L++ A K+F K P + + + I+I +CK
Sbjct: 321 NDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQ 380
Query: 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-------- 331
++ A + +M G PD YTC I + +K V + LKEMQEKG
Sbjct: 381 SSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTY 440
Query: 332 ---------------------------CKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364
+PS+ T+ ++M + A+ V+++M
Sbjct: 441 NALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIK 500
Query: 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
PD + Y+ LI L G+ ++A E+M +G+ ++ YN
Sbjct: 501 KGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYN 546
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 185 bits (470), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 128/466 (27%), Positives = 219/466 (46%), Gaps = 18/466 (3%)
Query: 87 RVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFG 146
R NH + + + + + D + +AL V ++ +V + L+R + AF
Sbjct: 87 RTKGSNHAVGI--LHEAIMANLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFR 144
Query: 147 FFTWAKTQTGYMHTPEMYNTMVDVLG----KSKKFCLMWELVKEMDELNNGYVSLATMST 202
FFTWA Q Y H P YN M+D+L K+K+F ++ +++ M N V + +
Sbjct: 145 FFTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLE 204
Query: 203 IMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260
I+R+ RY V+ F K+ V + + A ++L+D L K V+ + +
Sbjct: 205 ILRKYCE--RYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRH 262
Query: 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320
+ + FN+L GWC+ R A K ++EM + G P+ +Y I+ +C+ +
Sbjct: 263 RVKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEA 322
Query: 321 DDTLKEMQEKGCK---PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377
D M KG P+ T+ +++ AL K + E ++ +M S CLPD S Y +
Sbjct: 323 ADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDV 382
Query: 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437
I + A +V +A + ++M +G P+++TYN + C + + ALKL +M E C
Sbjct: 383 IEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRC 442
Query: 438 KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497
P +TY L+ M T M K D D TY +++ GL + + + AC
Sbjct: 443 APSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACF 502
Query: 498 FFEEMISKGI-VPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542
EE+++KG+ +PY L + +GN K I+K+ H K+
Sbjct: 503 LLEEVVNKGLKLPYRVFDSFL---MRLSEVGNLKA-IHKVSEHMKK 544
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 214/468 (45%), Gaps = 10/468 (2%)
Query: 61 DEDFVIPSLAGW--VESHRLN---EKSRISSRVLSENHETDVDKISKILSKQYQSPDKVV 115
DE +V+ L+ + S++ + E S ++V ++ + DK+ + ++ + +
Sbjct: 46 DESYVLAELSSLLPISSNKTSVSKEDSSSKNQVAIDSFLSAEDKLRGVFLQKLKGKSAIQ 105
Query: 116 EALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSK 175
++L G+ +S +V L R + FF WA + G Y+ ++ LG+ K
Sbjct: 106 KSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGRRK 165
Query: 176 KFCLMWELVKEM--DELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR 233
F M +++K M + +N L ++ M VR A+E F + +GV+ T
Sbjct: 166 LFSFMMDVLKGMVCEGVNP---DLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTE 222
Query: 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMF 293
+ + L+ L + + V A VF K IP S +NI+I GW K +V++ +K +KEM
Sbjct: 223 SFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMV 282
Query: 294 QQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN 353
+ GF PD +SY+ IE R + ++ KG P Y ++ A+ +
Sbjct: 283 ESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFD 342
Query: 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMI 413
E+++ Y +M ++C P+ YS L+ L K +V DA EIFE+M +GV+P + +
Sbjct: 343 ESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFL 402
Query: 414 SSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS 473
C+ A+ + QK + C+ Y LLK R + +L + M ++
Sbjct: 403 KPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYP 462
Query: 474 MDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
D Y +V GL G LE A EE + KG P Y L KL
Sbjct: 463 SDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKL 510
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 109/283 (38%), Gaps = 39/283 (13%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
YN M+ K + M +++KEM E G L + S ++ L R GR +D+VE F +
Sbjct: 258 YNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCL-SYSHLIEGLGRTGRINDSVEIFDNI 316
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKTRK 281
K G D + ++ + + + + + D C P + + ++ L+ G K RK
Sbjct: 317 KHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEP-NLETYSKLVSGLIKGRK 375
Query: 282 VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC----------------------------- 312
V DA + +EM +G P T F++ C
Sbjct: 376 VSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKL 435
Query: 313 ---REKDFRKVD---DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
R F K + EMQE G V Y ++ L + A+ V E+
Sbjct: 436 LLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKG 495
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTY 409
P+ YS L L + + + A ++F +KK N ++
Sbjct: 496 FCPNRFVYSRLSSKLMASNKTELAYKLFLKIKKARATENARSF 538
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/487 (25%), Positives = 225/487 (46%), Gaps = 51/487 (10%)
Query: 105 SKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKT-QTGYMHTPEM 163
+KQY+ + + ++ G++ S + + F ++ F T K + GY +
Sbjct: 101 TKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVI 160
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV------ 217
+NT+++ L + ELV M E+ + +L T++T++ L G+ DAV
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMVEMGH-KPTLITLNTLVNGLCLNGKVSDAVVLIDRM 219
Query: 218 -----------------------------EAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248
E R M++ ++ D S+++D L K S+
Sbjct: 220 VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSL 279
Query: 249 EHAYKVFLEFK------DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV 302
++A+ +F E + D I +N LI G+C + DD K +++M ++ SP+VV
Sbjct: 280 DNAFNLFNEMEIKGFKADIIT-----YNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVV 334
Query: 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362
+++ I+ + +E R+ D LKEM ++G P+ ITY ++ K ++ EA+++ + M
Sbjct: 335 TFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM 394
Query: 363 KSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEE 422
S C PD ++ LI KA R+ D E+F +M +GV+ N +TYNT++ C +
Sbjct: 395 ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKL 454
Query: 423 ENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482
E A KL Q+M +PD +Y LL C ++ + + K+ + +D G Y +
Sbjct: 455 EVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMII 514
Query: 483 VRGLIESGKLELACSFFEEMISKGIVPYHSTYK-MLEEKLEKKRLGNAKERINKLL--AH 539
+ G+ + K++ A F + KG+ Y M+ E K L A K+ H
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGH 574
Query: 540 AKEQKTF 546
A ++ T+
Sbjct: 575 APDELTY 581
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 179/366 (48%), Gaps = 2/366 (0%)
Query: 153 TQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR 212
+TG+ Y +++V+ KS + L EL+++M+E N + S I+ L + G
Sbjct: 220 VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE-RNIKLDAVKYSIIIDGLCKDGS 278
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNI 271
D+A F M+ G + D + L+ + K+ + K I + F++
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338
Query: 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331
LI + K K+ +A + +KEM Q+G +P+ ++Y I+ +C+E + + M KG
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 332 CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN 391
C P ++T+ I+++ KA +I++ L+++ +M + +T Y++L+ ++G+++ A
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458
Query: 392 EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451
++F++M + V P++++Y ++ C E E AL++ K+E+ + D Y ++
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGM 518
Query: 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH 511
C ++ L + V +DA Y ++ L L A F +M +G P
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDE 578
Query: 512 STYKML 517
TY +L
Sbjct: 579 LTYNIL 584
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 180/398 (45%), Gaps = 45/398 (11%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
+N + + K+K++ L+ L K+M+ + S+ T+S ++ R + A +
Sbjct: 91 FNRLFSAIAKTKQYELVLALCKQMESKGIAH-SIYTLSIMINCFCRCRKLSYAFSTMGKI 149
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQ----IFNILIHGWCK 278
K G E DT V+ +TL+ G +E LE D + + + N L++G C
Sbjct: 150 MKLGYEPDT----VIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 279 TRKVDDAQKAMKEMFQQGFSP-----------------------------------DVVS 303
KV DA + M + GF P D V
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363
Y+ I+ C++ + EM+ KG K +ITY ++ A + ++ K+ M
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEE 423
P+ +S LI K G++++A+++ ++M ++G+ PN +TYN++I C + E
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 424 NALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLV 483
A++++ M C PD T+ L+ C+ R+ L M V + TY +LV
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Query: 484 RGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
+G +SGKLE+A F+EM+S+ + P +YK+L + L
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 167/367 (45%), Gaps = 8/367 (2%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
Y+ ++D L K + L EM E+ + T +T++ GR+DD + R M
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEM-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNILIHGWCKTRKV 282
K + + SVL+D+ VK + A ++ E + I ++ +N LI G+CK ++
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL---KEMQEKGCKPSVITY 339
++A + + M +G PD++++ I YC+ ++DD L +EM +G + +TY
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKAN---RIDDGLELFREMSLRGVIANTVTY 441
Query: 340 TIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399
++ ++ ++ A K++++M S PD Y L+ L G ++ A EIF ++K
Sbjct: 442 NTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501
Query: 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459
+ ++ Y +I C S+ ++A L + K D Y ++ CRK +
Sbjct: 502 SKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSK 561
Query: 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519
+ L M + + D TY L+R + A EEM S G ST KM+
Sbjct: 562 ADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621
Query: 520 KLEKKRL 526
L L
Sbjct: 622 MLSSGEL 628
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 118/237 (49%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K DDA ++M Q P V+ + + K + V K+M+ KG S+ T +
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + ++++ A K+ PDT +++L+ L RV +A E+ + M +
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
G P ++T NT+++ C + +A+ L+ +M E +P+ TY P+L + C+ + +
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
LL M + ++ +DA Y+ ++ GL + G L+ A + F EM KG TY L
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTL 304
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 128/281 (45%), Gaps = 1/281 (0%)
Query: 245 GNSVEHAYKVFLEFKDCIPLSSQI-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVS 303
G + A +F + PL + I FN L KT++ + K+M +G + + +
Sbjct: 66 GIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYT 125
Query: 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363
+ I +CR + T+ ++ + G +P + + +++ L +++EAL++ ++M
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEE 423
P ++L+ L G+V DA + + M + G PN +TY +++ C +
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245
Query: 424 NALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLV 483
A++LL+KMEE K D Y+ ++ C+ + L M D TY +L+
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305
Query: 484 RGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
G +G+ + +MI + I P T+ +L + K+
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKE 346
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 165 bits (417), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 214/426 (50%), Gaps = 10/426 (2%)
Query: 116 EALKGCGVSVSNSLVEQTLRR--FSN-DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLG 172
E+L G+ +S L+++ L+R FS+ + F+ +A G+ H+ +TM+ +LG
Sbjct: 60 ESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILG 119
Query: 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK-D 231
+++KF +WEL+ E + +S TM ++ R+ + VE+F K+ + D
Sbjct: 120 RNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFD 179
Query: 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKE 291
T + L+ TL + S+ A V+ K Q FNIL+ GW + + + + MK
Sbjct: 180 TACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEMK- 238
Query: 292 MFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ 351
+G PDVV+Y I+ YC++++ K + +M+E+ P VITYT V+ LG Q
Sbjct: 239 --GKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQ 296
Query: 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNT 411
++A +V ++MK C PD + Y++ I A R+ DA+++ ++M K+G+ PN TYN
Sbjct: 297 PDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNL 356
Query: 412 MISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471
++ + +L +M + C P+ ++ L+KM R +++ + L M
Sbjct: 357 FFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKG 416
Query: 472 VSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKE 531
+ L+ L + K+E A EM+ KG P + ++K ++ +E L N +
Sbjct: 417 FGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLME---LANKHD 473
Query: 532 RINKLL 537
+N L+
Sbjct: 474 EVNNLI 479
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 94/207 (45%), Gaps = 6/207 (2%)
Query: 160 TPEM--YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV 217
TP++ Y T++ LG + E++KEM E Y +A + +R R DA
Sbjct: 278 TPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYG-CYPDVAAYNAAIRNFCIARRLGDAD 336
Query: 218 EAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFNILIHG 275
+ M K G+ + ++ L N + ++++++ +C+P ++Q LI
Sbjct: 337 KLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLP-NTQSCMFLIKM 395
Query: 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS 335
+ + KVD A + ++M +GF + ++ C + + L EM EKG +PS
Sbjct: 396 FKRHEKVDMAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPS 455
Query: 336 VITYTIVMHALGKAKQINEALKVYEKM 362
+++ + + A + +E + +KM
Sbjct: 456 NVSFKRIKLLMELANKHDEVNNLIQKM 482
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 186/365 (50%), Gaps = 5/365 (1%)
Query: 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELV-KEMDELNNGYVSLATMSTIMRRLVRGGRYD 214
G+M YN ++D +SK+ E V KEM E + ++ T + ++R G D
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE-SQVSPNVFTYNILIRGFCFAGNID 222
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNIL 272
A+ F M+ G + + L+D K ++ +K+ + K P + +N++
Sbjct: 223 VALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP-NLISYNVV 281
Query: 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332
I+G C+ ++ + + EM ++G+S D V+Y I+ YC+E +F + EM G
Sbjct: 282 INGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Query: 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392
PSVITYT ++H++ KA +N A++ ++M+ P+ Y++L+ S+ G + +A
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401
Query: 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452
+ +M G P+V+TYN +I+ C + E+A+ +L+ M+E PD +Y+ +L C
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461
Query: 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512
R + + M + + D TY+SL++G E + + AC +EEM+ G+ P
Sbjct: 462 RSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEF 521
Query: 513 TYKML 517
TY L
Sbjct: 522 TYTAL 526
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 173/344 (50%), Gaps = 2/344 (0%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
++ T +T++ + + DD + R M G+E + + +V+++ L + ++ V
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL 298
Query: 256 LEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314
E + L +N LI G+CK A EM + G +P V++YT I C+
Sbjct: 299 TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374
+ + + L +M+ +G P+ TYT ++ + +NEA +V +M + P Y
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434
++LI G+++DA + EDMK++G+ P+V++Y+T++S C + + AL++ ++M E
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE 478
Query: 435 DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL 494
KPD TY+ L++ C ++R K L M + + D TY +L+ G LE
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEK 538
Query: 495 ACSFFEEMISKGIVPYHSTYKMLEEKLEKK-RLGNAKERINKLL 537
A EM+ KG++P TY +L L K+ R AK + KL
Sbjct: 539 ALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLF 582
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 193/411 (46%), Gaps = 22/411 (5%)
Query: 147 FFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMR 205
F + GY YNT++ G K+ LV + L +G S+ T ++++
Sbjct: 296 FVLTEMNRRGYSLDEVTYNTLIK--GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIH 353
Query: 206 RLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPL 264
+ + G + A+E M+ G+ + R + L+D + + AY+V E D
Sbjct: 354 SMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP 413
Query: 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324
S +N LI+G C T K++DA +++M ++G SPDVVSY+ + +CR D +
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVK 473
Query: 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384
+EM EKG KP ITY+ ++ + ++ EA +YE+M PD Y++LI
Sbjct: 474 REMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCME 533
Query: 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY 444
G ++ A ++ +M ++GV+P+V+TY+ +I+ +S A +LL K+ + P TY
Sbjct: 534 GDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTY 593
Query: 445 APLLKMC---------------CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES 489
L++ C C K M + + M + D Y ++ G +
Sbjct: 594 HTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRA 653
Query: 490 GKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540
G + A + ++EM+ G + + T L + L K+ G E +N ++ H
Sbjct: 654 GDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKE--GKVNE-LNSVIVHV 701
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 182/376 (48%), Gaps = 29/376 (7%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL--ATMSTIMRRLVRGGRYDDAVEAFR 221
YN +++ L + + M E+ + E+N SL T +T+++ + G + A+
Sbjct: 278 YNVVINGLCREGR---MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA 334
Query: 222 GMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL-----SSQIFNILIHGW 276
M ++G+ + L+ ++ K ++ A +EF D + + + + + L+ G+
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRA----MEFLDQMRVRGLCPNERTYTTLVDGF 390
Query: 277 CKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV 336
+ +++A + ++EM GFSP VV+Y I +C L++M+EKG P V
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450
Query: 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396
++Y+ V+ ++ ++EAL+V +M PDT YSSLI + R K+A +++E+
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEE 510
Query: 397 MKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR 456
M + G+ P+ TY +I++ C + E AL+L +M E PD TY+ L+ ++ R
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSR 570
Query: 457 MKVLNFLLTHMF---------------KNDVSMDAGTYASLVRGLIESGKLELACSFFEE 501
+ LL +F +N +++ + SL++G G + A FE
Sbjct: 571 TREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFES 630
Query: 502 MISKGIVPYHSTYKML 517
M+ K P + Y ++
Sbjct: 631 MLGKNHKPDGTAYNIM 646
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 138/289 (47%), Gaps = 4/289 (1%)
Query: 249 EHAYKVFLEFKDCIPL---SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT 305
E+A VF ++ L +S +F++++ + + +D A + GF P V+SY
Sbjct: 114 EYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYN 173
Query: 306 CFIEHYCREK-DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364
++ R K + ++ KEM E P+V TY I++ A I+ AL +++KM++
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMET 233
Query: 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN 424
CLP+ Y++LI K ++ D ++ M +G+ PN+++YN +I+ C +
Sbjct: 234 KGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE 293
Query: 425 ALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484
+L +M D TY L+K C++ + M ++ ++ TY SL+
Sbjct: 294 VSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIH 353
Query: 485 GLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERI 533
+ ++G + A F ++M +G+ P TY L + +K N R+
Sbjct: 354 SMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE--FKDCIP----- 263
G + A++ M + GV D SVL++ L K + A ++ L+ +++ +P
Sbjct: 534 GDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTY 593
Query: 264 --LSSQIFNI-------LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314
L NI LI G+C + +A + + M + PD +Y I +CR
Sbjct: 594 HTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRA 653
Query: 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374
D RK KEM + G +T ++ AL K ++NE V + L +
Sbjct: 654 GDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQA 713
Query: 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405
L+ I + G + ++ +M K G +PN
Sbjct: 714 KVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744
>sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200
OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1
Length = 523
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 215/427 (50%), Gaps = 6/427 (1%)
Query: 110 SPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVD 169
SP+K+ L CG+ ++ LV + + R +D PA+ Q+ ++ + +YN ++D
Sbjct: 92 SPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVKQSVHLSSSMLYNEILD 151
Query: 170 VLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE 229
VLGK ++F ++ EM + +G+V+ T ++ R + D+AV F K++G++
Sbjct: 152 VLGKMRRFEEFHQVFDEMSK-RDGFVNEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGID 210
Query: 230 KDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289
D A L+ L + VE A +F + + N++++GWC V +A++
Sbjct: 211 DDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNMILNGWCVLGNVHEAKRFW 270
Query: 290 KEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA 349
K++ PDVVSY I ++ K + + M + P V V+ AL
Sbjct: 271 KDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFK 330
Query: 350 KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG--VVPNVL 407
K+I EAL+V+ ++ P+ Y+SL+ L K R + E+ E+M+ +G PN +
Sbjct: 331 KRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDV 390
Query: 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHM 467
T++ ++ + RS++ + +L++M ++ C+ + Y + ++ + + + + + + M
Sbjct: 391 TFSYLLKYS-QRSKDVDI--VLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEM 447
Query: 468 FKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLG 527
++ + D TY + GL GK+ A S+F+EM+SKG+VP T +L + K R+
Sbjct: 448 ERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQNKTKPRVE 507
Query: 528 NAKERIN 534
+ R N
Sbjct: 508 DKMLRSN 514
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 199/391 (50%), Gaps = 10/391 (2%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWEL 183
S V + L +SND A FF W + ++G+ HT E +N ++D+LGK +F + W L
Sbjct: 44 SYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWAL 103
Query: 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243
+ M + T + +R V +A++A+ + + + +D + L+D L
Sbjct: 104 INRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNL-RDETSFYNLVDALC 162
Query: 244 KGNSVEHAYKVFLEFKDCIP-----LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298
+ V A ++ K+ I +++I N+++ GW K ++ K+M +G +
Sbjct: 163 EHKHVVEAEELCFG-KNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVT 221
Query: 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKV 358
D+ SY+ +++ C+ K KEM+ + K V+ Y V+ A+G ++ + ++V
Sbjct: 222 KDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRV 281
Query: 359 YEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA 418
+ +M+ C P+ + ++++I +L + GR++DA + ++M K+G P+ +TY + S
Sbjct: 282 FREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEK 341
Query: 419 RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478
SE L L +M +P +TY L++ R ++ + ++ M ++ + D+
Sbjct: 342 PSE---ILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAA 398
Query: 479 YASLVRGLIESGKLELACSFFEEMISKGIVP 509
Y +++ LI+ G L++A + EEMI +G+ P
Sbjct: 399 YNAVIDALIQKGMLDMAREYEEEMIERGLSP 429
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 178/366 (48%), Gaps = 11/366 (3%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS--LATMSTIMRRLVRGGRYDDAVEAFR 221
YN M+ +C E+ + L+ VS + T +TI+R L G+ A+E
Sbjct: 175 YNVMI------SGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 222 GMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKT 279
M + D ++L++ + + V HA K+ E +D C P +N+L++G CK
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP-DVVTYNVLVNGICKE 287
Query: 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339
++D+A K + +M G P+V+++ + C + + L +M KG PSV+T+
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347
Query: 340 TIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399
I+++ L + + A+ + EKM C P++ Y+ L+ K ++ A E E M
Sbjct: 348 NILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Query: 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459
+G P+++TYNTM+++ C + E+A+++L ++ C P TY ++ + +
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467
Query: 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519
LL M D+ D TY+SLV GL GK++ A FF E GI P T+ +
Sbjct: 468 AIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIML 527
Query: 520 KLEKKR 525
L K R
Sbjct: 528 GLCKSR 533
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 163/325 (50%), Gaps = 6/325 (1%)
Query: 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260
+T++R R G+ A + ++ G D +V++ K + +A V D
Sbjct: 141 TTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVL----D 196
Query: 261 CIPLSSQI--FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318
+ +S + +N ++ C + K+ A + + M Q+ PDV++YT IE CR+
Sbjct: 197 RMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVG 256
Query: 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378
L EM+++GC P V+TY ++++ + K +++EA+K M S C P+ ++ ++
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316
Query: 379 FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438
+ GR DA ++ DM ++G P+V+T+N +I+ C + A+ +L+KM + C+
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 439 PDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSF 498
P+ +Y PLL C++K+M L M D TY +++ L + GK+E A
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 499 FEEMISKGIVPYHSTYKMLEEKLEK 523
++ SKG P TY + + L K
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAK 461
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 160/296 (54%), Gaps = 10/296 (3%)
Query: 160 TPEM--YNTMVDVLGKSKKFCLMWELVKEMDELNNGYV--SLATMSTIMRRLVRGGRYDD 215
TP++ YN +V+ + K + + E +K ++++ + ++ T + I+R + GR+ D
Sbjct: 271 TPDVVTYNVLVNGICKEGR---LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327
Query: 216 AVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNILI 273
A + M + G ++L++ L + + A + + C P +S +N L+
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP-NSLSYNPLL 386
Query: 274 HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333
HG+CK +K+D A + ++ M +G PD+V+Y + C++ + L ++ KGC
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCS 446
Query: 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEI 393
P +ITY V+ L KA + +A+K+ ++M++ D PDT YSSL+ LS+ G+V +A +
Sbjct: 447 PVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKF 506
Query: 394 FEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLK 449
F + ++ G+ PN +T+N+++ C + + A+ L M CKP+ +Y L++
Sbjct: 507 FHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 168/378 (44%), Gaps = 11/378 (2%)
Query: 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDA---VEAFRGM 223
MV + FCL+ + +E N VS T +I ++ G R + V A +
Sbjct: 4 MVSTSSAQEGFCLIQQFHREYKRGNKLDVSCRTSGSISSKIPLGSRKRNRLVLVSAASKV 63
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283
+ G+ + L N H V F L N + +T +++
Sbjct: 64 ESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSF----ALEDVESNNHLRQMVRTGELE 119
Query: 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVM 343
+ K ++ M G PD++ T I +CR RK L+ ++ G P VITY +++
Sbjct: 120 EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMI 179
Query: 344 HALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403
KA +IN AL V ++M PD Y++++ L +G++K A E+ + M ++
Sbjct: 180 SGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCY 236
Query: 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFL 463
P+V+TY +I + C S +A+KLL +M + C PD TY L+ C++ R+
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296
Query: 464 LTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL-E 522
L M + + T+ ++R + +G+ A +M+ KG P T+ +L L
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356
Query: 523 KKRLGNAKERINKLLAHA 540
K LG A + + K+ H
Sbjct: 357 KGLLGRAIDILEKMPQHG 374
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 183/367 (49%), Gaps = 4/367 (1%)
Query: 153 TQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR 212
+ G+ Y +++ L KS L +L ++M+E N S+ S ++ L + G
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE-RNIKASVVQYSIVIDSLCKDGS 260
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFN 270
+DDA+ F M+ G++ D S L+ L + K+ E ++ IP F+
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP-DVVTFS 319
Query: 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330
LI + K K+ +A++ EM +G +PD ++Y I+ +C+E + + M K
Sbjct: 320 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 379
Query: 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390
GC+P ++TY+I++++ KAK++++ ++++ ++ S +P+T Y++L+ ++G++ A
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439
Query: 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKM 450
E+F++M +GV P+V+TY ++ C E AL++ +KM++ Y ++
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499
Query: 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY 510
C ++ L + V D TY ++ GL + G L A F +M G P
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559
Query: 511 HSTYKML 517
TY +L
Sbjct: 560 DFTYNIL 566
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 159/328 (48%), Gaps = 1/328 (0%)
Query: 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE 257
T ++ RL + G A++ FR M++ ++ S+++D+L K S + A +F E
Sbjct: 211 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 258 FK-DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316
+ I ++ LI G C K DD K ++EM + PDVV+++ I+ + +E
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
+ + EM +G P ITY ++ K ++EA ++++ M S C PD YS
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 377 LIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436
LI KA RV D +F ++ +G++PN +TYNT++ C + A +L Q+M
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 437 CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELAC 496
P TY LL C + + M K+ +++ G Y ++ G+ + K++ A
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 497 SFFEEMISKGIVPYHSTYKMLEEKLEKK 524
S F + KG+ P TY ++ L KK
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKK 538
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 171/367 (46%), Gaps = 8/367 (2%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
Y+ ++D L K F L EM E+ + T S+++ L G++DD + R M
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEM-EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 306
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNILIHGWCKTRKV 282
+ D S L+D VK + A +++ E I + +N LI G+CK +
Sbjct: 307 IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCL 366
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL---KEMQEKGCKPSVITY 339
+A + M +G PD+V+Y+ I YC+ K +VDD + +E+ KG P+ ITY
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAK---RVDDGMRLFREISSKGLIPNTITY 423
Query: 340 TIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399
++ ++ ++N A +++++M S P Y L+ L G + A EIFE M+K
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Query: 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459
+ + YN +I C S+ ++A L + + KPD TY ++ C+K +
Sbjct: 484 SRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSE 543
Query: 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519
+ L M ++ + D TY L+R + L + EEM G ST KM+ +
Sbjct: 544 ADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603
Query: 520 KLEKKRL 526
L +RL
Sbjct: 604 MLSDRRL 610
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 179/394 (45%), Gaps = 13/394 (3%)
Query: 154 QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRY 213
Q+ + TP +N + + ++K++ L+ K M ELN + TM+ ++ R +
Sbjct: 63 QSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGM-ELNGIEHDMYTMTIMINCYCRKKKL 121
Query: 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV---FLEFK---DCIPLSSQ 267
A K G E DT S L++ V A + +E K D + +S+
Sbjct: 122 LFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVST- 180
Query: 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327
LI+G C +V +A + M + GF PD V+Y + C+ + D ++M
Sbjct: 181 ----LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM 236
Query: 328 QEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRV 387
+E+ K SV+ Y+IV+ +L K ++AL ++ +M+ D YSSLI L G+
Sbjct: 237 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 296
Query: 388 KDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447
D ++ +M + ++P+V+T++ +I + A +L +M PD TY L
Sbjct: 297 DDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356
Query: 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI 507
+ C++ + N + M D TY+ L+ ++ +++ F E+ SKG+
Sbjct: 357 IDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416
Query: 508 VPYHSTYKMLEEKL-EKKRLGNAKERINKLLAHA 540
+P TY L + +L AKE ++++
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 123/302 (40%), Gaps = 36/302 (11%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
KV+DA + M Q P + + R K + V K M+ G + + T T
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + K++ A V + PDT +S+L+ GRV +A + + M +
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK------ 454
P+++T +T+I+ C + AL L+ +M E +PD TY P+L C+
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 455 ----KRMKVLNF-------------------------LLTHMFKNDVSMDAGTYASLVRG 485
++M+ N L M + D TY+SL+ G
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289
Query: 486 LIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK-RLGNAKERINKLLAHAKEQK 544
L GK + EMI + I+P T+ L + K+ +L AKE N+++
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349
Query: 545 TF 546
T
Sbjct: 350 TI 351
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 175/345 (50%), Gaps = 3/345 (0%)
Query: 183 LVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242
++EM + + T +T++ L + G A+E M + G + D + ++ L
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
Query: 243 VKGNSVEHAYKVFLEF--KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD 300
K V+ A +V + +DC P ++ +N LI CK +V++A + + + +G PD
Sbjct: 341 CKLGEVKEAVEVLDQMITRDCSP-NTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399
Query: 301 VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360
V ++ I+ C ++ R + +EM+ KGC+P TY +++ +L +++EAL + +
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 459
Query: 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS 420
+M+ C Y++LI KA + ++A EIF++M+ GV N +TYNT+I C
Sbjct: 460 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSR 519
Query: 421 EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYA 480
E+A +L+ +M + KPD TY LL CR +K ++ M N D TY
Sbjct: 520 RVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYG 579
Query: 481 SLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKR 525
+L+ GL ++G++E+A + KGI Y + + L +KR
Sbjct: 580 TLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKR 624
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 6/323 (1%)
Query: 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF 258
T +T+M+ + G D A+ M ++G +++V++ K VE A E
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285
Query: 259 --KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316
+D FN L++G CK V A + M M Q+G+ PDV +Y I C+ +
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345
Query: 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
++ + L +M + C P+ +TY ++ L K Q+ EA ++ + S LPD ++S
Sbjct: 346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 405
Query: 377 LI--FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434
LI L++ RV A E+FE+M+ +G P+ TYN +I S C++ + + AL +L++ME
Sbjct: 406 LIQGLCLTRNHRV--AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463
Query: 435 DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL 494
C TY L+ C+ + + + M + VS ++ TY +L+ GL +S ++E
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 495 ACSFFEEMISKGIVPYHSTYKML 517
A ++MI +G P TY L
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSL 546
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/402 (27%), Positives = 192/402 (47%), Gaps = 8/402 (1%)
Query: 113 KVVEALKGCGVSVSNSLVEQTLRRFSND--LTPAFGFFTWAKTQTGYMHTPEMYNTMVDV 170
++ E + G S SN V + F + + A F Q G+ +NT+V+
Sbjct: 245 RIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304
Query: 171 LGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE 229
L K+ E++ M L GY + T ++++ L + G +AVE M
Sbjct: 305 LCKAGHVKHAIEIMDVM--LQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 230 KDTRALSVLMDTLVKGNSVEHAYKV--FLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287
+T + L+ TL K N VE A ++ L K +P FN LI G C TR A +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILP-DVCTFNSLIQGLCLTRNHRVAME 421
Query: 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG 347
+EM +G PD +Y I+ C + + + LK+M+ GC SVITY ++
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481
Query: 348 KAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL 407
KA + EA +++++M+ ++ Y++LI L K+ RV+DA ++ + M +G P+
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541
Query: 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHM 467
TYN++++ C + + A ++Q M + C+PD TY L+ C+ R++V + LL +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 468 FKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVP 509
+++ Y +++GL K A + F EM+ + P
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP 643
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 166/395 (42%), Gaps = 5/395 (1%)
Query: 130 VEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDE 189
V T FS +LTP ++A + + + ++ ++D L L +
Sbjct: 18 VTLTHHSFSLNLTPPSSTISFASPHSAALSSTDV--KLLDSLRSQPDDSAALRLFNLASK 75
Query: 190 LNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVE 249
N A I+ RL R G +DD + MK E T +L+++ + +
Sbjct: 76 KPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQD 135
Query: 250 HAYKVFLEFKDCIPL--SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307
V D L + +N +++ + + + +M G PDV ++
Sbjct: 136 EILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVL 195
Query: 308 IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367
I+ CR R L++M G P T+T VM + ++ AL++ E+M C
Sbjct: 196 IKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGC 255
Query: 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ-GVVPNVLTYNTMISSACARSEEENAL 426
+ ++ K GRV+DA ++M Q G P+ T+NT+++ C ++A+
Sbjct: 256 SWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAI 315
Query: 427 KLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486
+++ M ++ PD TY ++ C+ +K +L M D S + TY +L+ L
Sbjct: 316 EIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTL 375
Query: 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
+ ++E A + SKGI+P T+ L + L
Sbjct: 376 CKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 124/274 (45%), Gaps = 12/274 (4%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
YN ++D L K ++K+M EL+ S+ T +T++ + + +A E F M
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ-----IFNILIHGWCK 278
+ +GV +++ + L+D L K VE A ++ D + + Q +N L+ +C+
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM----DQMIMEGQKPDKYTYNSLLTHFCR 552
Query: 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT 338
+ A ++ M G PD+V+Y I C+ L+ +Q KG +
Sbjct: 553 GGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHA 612
Query: 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF--ILSKAGRVKDANEIFED 396
Y V+ L + ++ EA+ ++ +M + P + ++F + + G +++A + +
Sbjct: 613 YNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVE 672
Query: 397 MKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430
+ ++G VP + + S EE +KL+
Sbjct: 673 LLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVN 706
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 4/353 (1%)
Query: 171 LGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK 230
+ ++K+F L+ + K++ ELN ++ T++ ++ R + A + K G E
Sbjct: 98 IARTKQFNLVLDFCKQL-ELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEP 156
Query: 231 DTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKA 288
DT + L+ L V A + + C P +N +++G C++ A
Sbjct: 157 DTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQP-DVVTYNSIVNGICRSGDTSLALDL 215
Query: 289 MKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348
+++M ++ DV +Y+ I+ CR+ KEM+ KG K SV+TY ++ L K
Sbjct: 216 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 275
Query: 349 AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT 408
A + N+ + + M S + +P+ ++ L+ + K G++++ANE++++M +G+ PN++T
Sbjct: 276 AGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIIT 335
Query: 409 YNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF 468
YNT++ C ++ A +L M + C PD T+ L+K C KR+ + ++
Sbjct: 336 YNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS 395
Query: 469 KNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
K + +A TY+ LV+G +SGK++LA F+EM+S G++P TY +L + L
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 184/382 (48%), Gaps = 3/382 (0%)
Query: 145 FGFFTWAKT-QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203
F + K + GY +NT++ L K LV M E N + T ++I
Sbjct: 141 FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE-NGCQPDVVTYNSI 199
Query: 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CI 262
+ + R G A++ R M++ V+ D S ++D+L + ++ A +F E + I
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259
Query: 263 PLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322
S +N L+ G CK K +D +K+M + P+V+++ ++ + +E ++ ++
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
KEM +G P++ITY +M +++EA + + M + C PD ++SLI
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
RV D ++F ++ K+G+V N +TY+ ++ C + + A +L Q+M PD
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
TY LL C +++ + + K+ + + Y +++ G+ + GK+E A + F +
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499
Query: 503 ISKGIVPYHSTYKMLEEKLEKK 524
KG+ P TY ++ L KK
Sbjct: 500 PCKGVKPNVMTYTVMISGLCKK 521
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 187/395 (47%), Gaps = 39/395 (9%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
YN++V+ + +S L +L+++M+E N + T STI+ L R G D A+ F+ M
Sbjct: 196 YNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFNILIHGWCKTRK 281
+ G++ + L+ L K + + ++ +P + FN+L+ + K K
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP-NVITFNVLLDVFVKEGK 313
Query: 282 VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI 341
+ +A + KEM +G SP++++Y ++ YC + + ++ L M C P ++T+T
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373
Query: 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG 401
++ K++++ +KV+ + + + YS L+ ++G++K A E+F++M G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 402 VVPNVLTYNTMISSACARSEEENALKLLQKME---------------EDLC--------- 437
V+P+V+TY ++ C + E AL++ + ++ E +C
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493
Query: 438 -----------KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486
KP+ TY ++ C+K + N LL M ++ + + TY +L+R
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553
Query: 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
+ G L + EEM S G S+ KM+ + L
Sbjct: 554 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 180/367 (49%), Gaps = 11/367 (2%)
Query: 141 LTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLAT 199
+ A F +T+ G + YN++V L K+ K+ L+K+M ++ V ++ T
Sbjct: 244 IDAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVIT 300
Query: 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LE 257
+ ++ V+ G+ +A E ++ M G+ + + LMD N + A + +
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMV 360
Query: 258 FKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317
C P F LI G+C ++VDD K + + ++G + V+Y+ ++ +C+
Sbjct: 361 RNKCSP-DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419
Query: 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377
+ ++ +EM G P V+TY I++ L ++ +AL+++E ++ Y+++
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 479
Query: 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437
I + K G+V+DA +F + +GV PNV+TY MIS C + A LL+KMEED
Sbjct: 480 IEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 539
Query: 438 KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497
P+ TY L++ R + L+ M S DA + ++ L+ SG+L+ +
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL-SGELDKS-- 596
Query: 498 FFEEMIS 504
F +M+S
Sbjct: 597 -FLDMLS 602
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 1/261 (0%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K DDA +EM + P +V ++ F R K F V D K+++ G ++ T
Sbjct: 68 KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + + A V K+ PDT+ +++LI L G+V +A + + M +
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
G P+V+TYN++++ C + AL LL+KMEE K D TY+ ++ CR +
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520
L M + TY SLVRGL ++GK ++M+S+ IVP T+ +L +
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307
Query: 521 LEKK-RLGNAKERINKLLAHA 540
K+ +L A E +++
Sbjct: 308 FVKEGKLQEANELYKEMITRG 328
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 206/449 (45%), Gaps = 53/449 (11%)
Query: 134 LRRFSNDLTPAFGFFTWAKTQ--TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN 191
L R D+ + F A + GY+H + MV L + KF +L+ M ++
Sbjct: 22 LMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRM-KIE 80
Query: 192 NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251
N VS + +I R R R D++ F MK + + +A ++ LV+ N + A
Sbjct: 81 NCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLA 140
Query: 252 YKVFLEFKDC-IPLSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309
+K + ++ +P + N+LI C+ VD K EM ++G PD +Y I
Sbjct: 141 FKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLIS 200
Query: 310 HYCREKDFRKVDDTLK---EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
CR F ++D+ K EM EK C P+V+TYT +++ L +K ++EA++ E+MKS
Sbjct: 201 GLCR---FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKG 257
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426
P+ YSSL+ L K GR A E+FE M +G PN++TY T+I+ C + + A+
Sbjct: 258 IEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAV 317
Query: 427 KLLQKMEEDLCKPDCETYAPLLK-MCCRKKRMKVLNFL------------LT-------- 465
+LL +M KPD Y ++ C K + NFL LT
Sbjct: 318 ELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTS 377
Query: 466 --------------------HMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505
M +S++ T SLV+ L + G+ + A +E+++
Sbjct: 378 NEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTD 437
Query: 506 GIVPYHSTYKML-EEKLEKKRLGNAKERI 533
G +P T+K+L L+K +G A + +
Sbjct: 438 GCIPSKGTWKLLIGHTLDKTIVGEASDTL 466
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 2/213 (0%)
Query: 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385
+M++ C PS Y V+ L + Q+N A K Y+ M+ P + + LI L +
Sbjct: 111 KMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRND 170
Query: 386 RVKDAN-EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY 444
DA +IF +M K+G P+ TY T+IS C + A KL +M E C P TY
Sbjct: 171 GTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTY 230
Query: 445 APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504
L+ C K + L M + + TY+SL+ GL + G+ A FE M++
Sbjct: 231 TSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMA 290
Query: 505 KGIVPYHSTYKMLEEKL-EKKRLGNAKERINKL 536
+G P TY L L +++++ A E ++++
Sbjct: 291 RGCRPNMVTYTTLITGLCKEQKIQEAVELLDRM 323
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 183/365 (50%), Gaps = 7/365 (1%)
Query: 97 VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTG 156
V+ +S +L + P EAL+ G+ + Q L++ ND A GFF W K Q G
Sbjct: 302 VENVSSVLRRFRWGP-AAEEALQNLGLRIDAYQANQVLKQM-NDYGNALGFFYWLKRQPG 359
Query: 157 YMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDD 215
+ H Y TMV LG++K+F + +L+ EM + +G + T + ++ R ++
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEM--VRDGCQPNTVTYNRLIHSYGRANYLNE 417
Query: 216 AVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFK-DCIPLSSQIFNILIH 274
A+ F M++ G + D L+D K ++ A ++ + + + ++++I+
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477
Query: 275 GWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP 334
K + A K EM QG +P++V+Y ++ + + ++++ ++MQ G +P
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537
Query: 335 SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIF 394
+TY+IVM LG + EA V+ +M+ + +PD Y L+ + KAG V+ A + +
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597
Query: 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454
+ M G+ PNV T N+++S+ ++ A +LLQ M +P +TY LL CC
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS-CCTD 656
Query: 455 KRMKV 459
R K+
Sbjct: 657 GRSKL 661
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 169/350 (48%), Gaps = 11/350 (3%)
Query: 191 NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT-RALSVLMDTLVKGNSVE 249
N+G++ + +S+++RR R+ A E ++ G+ D +A VL GN++
Sbjct: 297 NSGHI-VENVSSVLRRF----RWGPAAE--EALQNLGLRIDAYQANQVLKQMNDYGNALG 349
Query: 250 HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309
Y +L+ + + ++ + ++ K + EM + G P+ V+Y I
Sbjct: 350 FFY--WLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIH 407
Query: 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
Y R + + +MQE GCKP +TY ++ KA ++ A+ +Y++M++ P
Sbjct: 408 SYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSP 467
Query: 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429
DT YS +I L KAG + A+++F +M QG PN++TYN M+ +NALKL
Sbjct: 468 DTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLY 527
Query: 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES 489
+ M+ +PD TY+ ++++ ++ + T M + + D Y LV ++
Sbjct: 528 RDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKA 587
Query: 490 GKLELACSFFEEMISKGIVPYHST-YKMLEEKLEKKRLGNAKERINKLLA 538
G +E A +++ M+ G+ P T +L L ++ A E + +LA
Sbjct: 588 GNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLA 637
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 119/282 (42%), Gaps = 41/282 (14%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFRG 222
Y+ +++ LGK+ +L EM ++ G +L T + +M + Y +A++ +R
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEM--VDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRD 529
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFNILIHGWCKTR 280
M+ G E D S++M+ L +E A VF E K+ IP ++ +L+ W K
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIP-DEPVYGLLVDLWGKAG 588
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
V+ A + + M G P+V + + + R + + L+ M G +PS+ TYT
Sbjct: 589 NVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYT 648
Query: 341 IVMHA---------LGKAKQI--------------------------NEALKVYEKMKSD 365
+++ +G Q+ N A + M S+
Sbjct: 649 LLLSCCTDGRSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSE 708
Query: 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL 407
D +++ L K+G+ ++A ++E ++ V P+ L
Sbjct: 709 DRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDAL 750
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 197/420 (46%), Gaps = 46/420 (10%)
Query: 159 HTPEM--YNTMVDVLGKSKKFCLMWELVKEMDELN---NGYVSLATMSTIMRRLVRGGRY 213
+TP++ Y+T+V+ + + +W+L++ M N Y+ +I+ L R +
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYI----YGSIIGLLCRICKL 332
Query: 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIP-------- 263
+A EAF M + G+ DT + L+D K + A K F E +D P
Sbjct: 333 AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392
Query: 264 --------------------------LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF 297
S F LI+G+CK + DA + M Q G
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 452
Query: 298 SPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALK 357
SP+VV+YT I+ C+E D ++ L EM + G +P++ TY +++ L K+ I EA+K
Sbjct: 453 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Query: 358 VYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417
+ + ++ DT Y++L+ K+G + A EI ++M +G+ P ++T+N +++ C
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 572
Query: 418 ARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG 477
E+ KLL M P+ T+ L+K C + +K + M V D
Sbjct: 573 LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 632
Query: 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK-LEKKRLGNAKERINKL 536
TY +LV+G ++ ++ A F+EM KG STY +L + L++K+ A+E +++
Sbjct: 633 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 2/327 (0%)
Query: 193 GYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251
GY + + ST++ R G D + MK+ G++ ++ ++ L + + A
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 252 YKVFLE-FKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH 310
+ F E + I + ++ LI G+CK + A K EM + +PDV++YT I
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 395
Query: 311 YCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD 370
+C+ D + EM KG +P +T+T +++ KA + +A +V+ M C P+
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
Query: 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430
Y++LI L K G + ANE+ +M K G+ PN+ TYN++++ C E A+KL+
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 515
Query: 431 KMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESG 490
+ E D TY L+ C+ M +L M + T+ L+ G G
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 491 KLELACSFFEEMISKGIVPYHSTYKML 517
LE M++KGI P +T+ L
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSL 602
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 8/331 (2%)
Query: 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKG-NSVEHAYKVFLEFKD---CI 262
LV G +A F M YG+ + +V + L K A VF EF + C
Sbjct: 185 LVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCW 244
Query: 263 PLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322
++S +NI+IH C+ ++ +A + M +G++PDV+SY+ + YCR + KV
Sbjct: 245 NVAS--YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWK 302
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
++ M+ KG KP+ Y ++ L + ++ EA + + +M LPDT Y++LI
Sbjct: 303 LIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC 362
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
K G ++ A++ F +M + + P+VLTY +IS C + A KL +M +PD
Sbjct: 363 KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 422
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
T+ L+ C+ MK + HM + S + TY +L+ GL + G L+ A EM
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482
Query: 503 ISKGIVPYHSTYKMLEEKLEKKRLGNAKERI 533
G+ P TY + L K GN +E +
Sbjct: 483 WKIGLQPNIFTYNSIVNGLCKS--GNIEEAV 511
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 162/324 (50%), Gaps = 3/324 (0%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
++A+ + ++ + + GR +A M+ G D + S +++ + ++ +K+
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 256 --LEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
++ K P +S I+ +I C+ K+ +A++A EM +QG PD V YT I+ +C+
Sbjct: 305 EVMKRKGLKP-NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 363
Query: 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373
D R EM + P V+TYT ++ + + EA K++ +M PD+
Sbjct: 364 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 423
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
++ LI KAG +KDA + M + G PNV+TY T+I C + ++A +LL +M
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483
Query: 434 EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLE 493
+ +P+ TY ++ C+ ++ L+ ++ D TY +L+ +SG+++
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 543
Query: 494 LACSFFEEMISKGIVPYHSTYKML 517
A +EM+ KG+ P T+ +L
Sbjct: 544 KAQEILKEMLGKGLQPTIVTFNVL 567
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT---YNTMISSACARSEE 422
D D + +L G +++A +FE M G+V +V + Y T +S C ++
Sbjct: 170 DWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKT-- 227
Query: 423 ENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482
A+ + ++ E + +Y ++ C+ R+K + LL M + D +Y+++
Sbjct: 228 ATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTV 287
Query: 483 VRGLIESGKLELACSFFEEMISKGIVPYHSTY 514
V G G+L+ E M KG+ P Y
Sbjct: 288 VNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 319
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 127 NSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKE 186
NSLV+Q R N+L A + G + Y +V K++ W L +E
Sbjct: 600 NSLVKQYCIR--NNLKAATAIYK-DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 187 MDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKG 245
M G+ VS++T S +++ ++ ++ +A E F M++ G+ D DT KG
Sbjct: 657 MK--GKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKG 714
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 186/369 (50%), Gaps = 4/369 (1%)
Query: 159 HTPEMY--NTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDA 216
H P++ NT+V+ L S K L+ +M E + T ++ + + G+ A
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALA 247
Query: 217 VEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFK-DCIPLSSQIFNILIHG 275
+E R M++ ++ D S+++D L K S+++A+ +F E + I + +NILI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307
Query: 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS 335
+C + DD K +++M ++ +P+VV+++ I+ + +E R+ ++ KEM +G P
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 367
Query: 336 VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395
ITYT ++ K +++A ++ + M S C P+ ++ LI KA R+ D E+F
Sbjct: 368 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 427
Query: 396 DMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK 455
M +GVV + +TYNT+I C + A +L Q+M P+ TY LL C
Sbjct: 428 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG 487
Query: 456 RMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYK 515
+ + + K+ + +D G Y ++ G+ + K++ A F + KG+ P TY
Sbjct: 488 ESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYN 547
Query: 516 MLEEKLEKK 524
++ L KK
Sbjct: 548 IMIGGLCKK 556
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 132/256 (51%), Gaps = 3/256 (1%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV- 254
++ T S ++ V+ G+ +A E + M G+ DT + L+D K N ++ A ++
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391
Query: 255 -FLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
+ K C P + + FNILI+G+CK ++DD + ++M +G D V+Y I+ +C
Sbjct: 392 DLMVSKGCDP-NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Query: 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373
+ +EM + P+++TY I++ L + +AL+++EK++ D
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
Y+ +I + A +V DA ++F + +GV P V TYN MI C + A L +KME
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKME 570
Query: 434 EDLCKPDCETYAPLLK 449
ED PD TY L++
Sbjct: 571 EDGHAPDGWTYNILIR 586
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 165/367 (44%), Gaps = 8/367 (2%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
Y+ ++D L K + L EM E+ ++ T + ++ GR+DD + R M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNILIHGWCKTRKV 282
K + + SVL+D+ VK + A ++ E I + + LI G+CK +
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL---KEMQEKGCKPSVITY 339
D A + + M +G P++ ++ I YC+ ++DD L ++M +G +TY
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKAN---RIDDGLELFRKMSLRGVVADTVTY 441
Query: 340 TIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399
++ + ++N A +++++M S P+ Y L+ L G + A EIFE ++K
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501
Query: 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459
+ ++ YN +I C S+ ++A L + KP +TY ++ C+K +
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSE 561
Query: 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519
L M ++ + D TY L+R + G + EE+ G ST KM+ +
Sbjct: 562 AELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621
Query: 520 KLEKKRL 526
L RL
Sbjct: 622 MLSDGRL 628
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 122/237 (51%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K DDA ++M P V+ ++ + K + V K+M+ KG ++ T +
Sbjct: 68 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + +++ A K+ P+T +S+LI L GRV +A E+ + M +
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
G P+++T NT+++ C +E A+ L+ KM E C+P+ TY P+L + C+ + +
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
LL M + ++ +DA Y+ ++ GL + G L+ A + F EM KGI TY +L
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 304
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 153/336 (45%), Gaps = 17/336 (5%)
Query: 193 GYVSLATMSTIMRRLVRGG----RYDDAVEAFRGMKKYGVEKDTRALSVLMD--TLVKGN 246
G+ + + + R +R G + DDA++ FR M +R L ++D L
Sbjct: 45 GFSAFSDRNLSYRERLRSGLVDIKADDAIDLFRDMIH------SRPLPTVIDFSRLFSAI 98
Query: 247 SVEHAYKVFLEFKDCIPLSSQIFN-----ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV 301
+ Y + L + L N I+I+ +C+ RK+ A AM ++ + G+ P+
Sbjct: 99 AKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNT 158
Query: 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEK 361
++++ I C E + + + M E G KP +IT +++ L + + EA+ + +K
Sbjct: 159 ITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDK 218
Query: 362 MKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421
M C P+ Y ++ ++ K+G+ A E+ M+++ + + + Y+ +I C
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 422 EENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYAS 481
+NA L +ME + TY L+ C R LL M K ++ + T++
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338
Query: 482 LVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
L+ ++ GKL A +EMI +GI P TY L
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSL 374
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 137/286 (47%), Gaps = 4/286 (1%)
Query: 258 FKDCI---PLSSQI-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
F+D I PL + I F+ L KT++ D K+M +G + ++ + + I +CR
Sbjct: 76 FRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCR 135
Query: 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373
+ + ++ + G +P+ IT++ +++ L +++EAL++ ++M PD
Sbjct: 136 CRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLIT 195
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
++L+ L +G+ +A + + M + G PN +TY +++ C + A++LL+KME
Sbjct: 196 INTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 255
Query: 434 EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLE 493
E K D Y+ ++ C+ + L M ++ + TY L+ G +G+ +
Sbjct: 256 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD 315
Query: 494 LACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539
+MI + I P T+ +L + K+ E ++K + H
Sbjct: 316 DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 361
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 187/372 (50%), Gaps = 7/372 (1%)
Query: 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYD 214
G H YN +++ L + +F + +V +M + GY + T+S+++ +G R
Sbjct: 99 GIGHDLYSYNIVINCLCRCSRFVIALSVVGKM--MKFGYEPDVVTVSSLINGFCQGNRVF 156
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNILI 273
DA++ M++ G D + ++D K V A ++F +D + + +N L+
Sbjct: 157 DAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLV 216
Query: 274 HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333
G C + + DA + M++M + P+V+++T I+ + +E F + +EM +
Sbjct: 217 AGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD 276
Query: 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEI 393
P V TY +++ L +++EA ++ + M + CLPD Y++LI K+ RV + ++
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 394 FEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453
F +M ++G+V + +TYNT+I + A ++ +M+ +P+ TY+ LL C
Sbjct: 337 FREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCM 393
Query: 454 KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHST 513
R++ L +M K+++ +D TY ++ G+ + G +E A F + KG+ P +
Sbjct: 394 NWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVS 453
Query: 514 YKMLEEKLEKKR 525
Y + +KR
Sbjct: 454 YTTMISGFCRKR 465
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 161/328 (49%), Gaps = 14/328 (4%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV- 254
S+ S ++ ++ + YD + F M+ G+ D + +++++ L + + A V
Sbjct: 68 SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 127
Query: 255 --FLEFK---DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309
++F D + +SS LI+G+C+ +V DA + +M + GF PDVV Y I+
Sbjct: 128 GKMMKFGYEPDVVTVSS-----LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID 182
Query: 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
C+ + M+ G + +TY ++ L + + ++A ++ M D +P
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 242
Query: 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429
+ ++++I + K G+ +A +++E+M ++ V P+V TYN++I+ C + A ++L
Sbjct: 243 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302
Query: 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES 489
M C PD TY L+ C+ KR+ L M + + D TY ++++G ++
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA 362
Query: 490 GKLELACSFFEEMISKGIVPYHSTYKML 517
G+ + A F M S+ P TY +L
Sbjct: 363 GRPDAAQEIFSRMDSR---PNIRTYSIL 387
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 147/306 (48%), Gaps = 9/306 (2%)
Query: 154 QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV--SLATMSTIMRRLVRGG 211
+ G+ +YNT++D S K L+ + V+ D + V T ++++ L G
Sbjct: 167 EMGFRPDVVIYNTIID---GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSG 223
Query: 212 RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFN 270
R+ DA R M + + + ++D VK A K++ E + C+ +N
Sbjct: 224 RWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283
Query: 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330
LI+G C +VD+A++ + M +G PDVV+Y I +C+ K + +EM ++
Sbjct: 284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR 343
Query: 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390
G ITY ++ +A + + A +++ +M D P+ YS L++ L RV+ A
Sbjct: 344 GLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKA 400
Query: 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKM 450
+FE+M+K + ++ TYN +I C E+A L + + KPD +Y ++
Sbjct: 401 LVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 460
Query: 451 CCRKKR 456
CRK++
Sbjct: 461 FCRKRQ 466
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 150/278 (53%), Gaps = 7/278 (2%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
YN++V L S ++ L+++M + + ++ T + ++ V+ G++ +A++ + M
Sbjct: 212 YNSLVAGLCCSGRWSDAARLMRDM-VMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM 270
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNILIHGWCKTRK 281
+ V+ D + L++ L V+ A ++ + K C+P +N LI+G+CK+++
Sbjct: 271 TRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP-DVVTYNTLINGFCKSKR 329
Query: 282 VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI 341
VD+ K +EM Q+G D ++Y I+ Y + + M + P++ TY+I
Sbjct: 330 VDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSI 386
Query: 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG 401
+++ L ++ +AL ++E M+ + D + Y+ +I + K G V+DA ++F + +G
Sbjct: 387 LLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKG 446
Query: 402 VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP 439
+ P+V++Y TMIS C + + + + L +KM+ED P
Sbjct: 447 LKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 1/251 (0%)
Query: 291 EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350
+M Q P +V ++ + + K++ V M+ G + +Y IV++ L +
Sbjct: 59 KMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 118
Query: 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
+ AL V KM PD SSLI + RV DA ++ M++ G P+V+ YN
Sbjct: 119 RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 178
Query: 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470
T+I +C +A++L +ME D + D TY L+ C R L+ M
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 238
Query: 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL-EKKRLGNA 529
D+ + T+ +++ ++ GK A +EEM + + P TY L L R+ A
Sbjct: 239 DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEA 298
Query: 530 KERINKLLAHA 540
K+ ++ ++
Sbjct: 299 KQMLDLMVTKG 309
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 35/199 (17%)
Query: 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
+ E + ++ KM LP +S ++ ++K+ +F M+ G+ ++ +YN
Sbjct: 49 NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYN 108
Query: 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR----------MKVL 460
+I+ C S AL ++ KM + +PD T + L+ C+ R M+ +
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168
Query: 461 NF-------------------------LLTHMFKNDVSMDAGTYASLVRGLIESGKLELA 495
F L M ++ V DA TY SLV GL SG+ A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228
Query: 496 CSFFEEMISKGIVPYHSTY 514
+M+ + IVP T+
Sbjct: 229 ARLMRDMVMRDIVPNVITF 247
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 192/403 (47%), Gaps = 19/403 (4%)
Query: 145 FGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELV------KEMDELNNGYVSLA 198
F FF + +Q G+ T E Y + L + F L+ K + ++ ++SL
Sbjct: 102 FAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLV 161
Query: 199 TM----------STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248
M +M G DA++ FR +K+ + R L+D ++K N
Sbjct: 162 EMRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPT 221
Query: 249 EHAYKVFLEFKDC-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307
+ ++E D PL+ +FNIL++ +CK + DAQK E+ ++ P VVS+
Sbjct: 222 GTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTL 281
Query: 308 IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367
I YC+ + + +M++ +P V TY+ +++AL K +++ A ++++M
Sbjct: 282 INGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGL 341
Query: 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALK 427
+P+ +++LI S+ G + E ++ M +G+ P+++ YNT+++ C + A
Sbjct: 342 IPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARN 401
Query: 428 LLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487
++ M +PD TY L+ CR ++ + M +N + +D +++LV G+
Sbjct: 402 IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC 461
Query: 488 ESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAK 530
+ G++ A EM+ GI P TY M+ + KK G+A+
Sbjct: 462 KEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKK--GDAQ 502
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 3/292 (1%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
++ + +T++ + G D+ M+K D S L++ L K N ++ A+ +F
Sbjct: 274 TVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLF 333
Query: 256 LEF--KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
E + IP + IF LIHG + ++D +++ ++M +G PD+V Y + +C+
Sbjct: 334 DEMCKRGLIP-NDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392
Query: 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373
D + + M +G +P ITYT ++ + + AL++ ++M + D
Sbjct: 393 NGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVG 452
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
+S+L+ + K GRV DA +M + G+ P+ +TY M+ + C + + + KLL++M+
Sbjct: 453 FSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQ 512
Query: 434 EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG 485
D P TY LL C+ +MK + LL M V D TY +L+ G
Sbjct: 513 SDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 169/370 (45%), Gaps = 6/370 (1%)
Query: 165 NTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
++D + K +W E+ L+ G+ +++ + +M + + G DA + F +
Sbjct: 209 GNLLDRMMKLNPTGTIWGFYMEI--LDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEI 266
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNILIHGWCKTRKV 282
K ++ + + L++ K +++ +++ + K ++ LI+ CK K+
Sbjct: 267 TKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKM 326
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV 342
D A EM ++G P+ V +T I + R + + ++ ++M KG +P ++ Y +
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386
Query: 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402
++ K + A + + M PD Y++LI + G V+ A EI ++M + G+
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446
Query: 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNF 462
+ + ++ ++ C +A + L++M KPD TY ++ C+K +
Sbjct: 447 ELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFK 506
Query: 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522
LL M + TY L+ GL + G+++ A + M++ G+VP TY L E
Sbjct: 507 LLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG-- 564
Query: 523 KKRLGNAKER 532
R N+ +R
Sbjct: 565 HHRHANSSKR 574
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 115/265 (43%), Gaps = 21/265 (7%)
Query: 90 SENHETDVDKIS--KILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGF 147
S N E D+ K S K+LSK Q PD V+ N+LV + + DL A
Sbjct: 356 SRNGEIDLMKESYQKMLSKGLQ-PDIVL----------YNTLVNGFCK--NGDLVAARNI 402
Query: 148 FTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRL 207
+ G Y T++D + E+ KEMD+ N + S ++ +
Sbjct: 403 VD-GMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQ-NGIELDRVGFSALVCGM 460
Query: 208 VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ 267
+ GR DA A R M + G++ D +++MD K + +K+ E + + S
Sbjct: 461 CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSV 520
Query: 268 I-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKE 326
+ +N+L++G CK ++ +A + M G PD ++Y +E + R + K +
Sbjct: 521 VTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSK---RYIQ 577
Query: 327 MQEKGCKPSVITYTIVMHALGKAKQ 351
E G + +Y +++ L +A +
Sbjct: 578 KPEIGIVADLASYKSIVNELDRASK 602
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 189/396 (47%), Gaps = 12/396 (3%)
Query: 147 FFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR 206
F K+ G+ H + Y++++ L +++ F + L M +L N Y + +
Sbjct: 69 FLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESL---MADLRNSYPPIKCGENLFID 125
Query: 207 LVR----GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI 262
L+R GRY+ ++ F + +GV++ R+L+ L++ L++ + + +F K+
Sbjct: 126 LLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESF 185
Query: 263 PLSSQIF--NILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320
++ IF N+L+ CK ++ A K + E+ G P++V+YT + Y D
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245
Query: 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380
L+EM ++G P TYT++M K + +EA V + M+ ++ P+ Y +I
Sbjct: 246 KRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRA 305
Query: 381 LSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440
L K + +A +F++M ++ +P+ +I + C + + A L +KM ++ C PD
Sbjct: 306 LCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPD 365
Query: 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500
+ L+ C++ R+ L K + TY +L+ G+ E G+L A ++
Sbjct: 366 NALLSTLIHWLCKEGRVTEARKLFDEFEKGSIP-SLLTYNTLIAGMCEKGELTEAGRLWD 424
Query: 501 EMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKL 536
+M + P TY +L E L K GN KE + L
Sbjct: 425 DMYERKCKPNAFTYNVLIEGLSKN--GNVKEGVRVL 458
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 5/243 (2%)
Query: 190 LNNGYVSLATMSTI-MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248
L+ G+ AT T+ M + GR+ +A M+K +E + V++ L K
Sbjct: 253 LDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKS 312
Query: 249 EHAYKVFLEF--KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306
A +F E + +P SS + I C+ KVD+A ++M + PD +
Sbjct: 313 GEARNMFDEMLERSFMPDSSLCCKV-IDALCEDHKVDEACGLWRKMLKNNCMPDNALLST 371
Query: 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
I C+E + E EKG PS++TY ++ + + ++ EA ++++ M
Sbjct: 372 LIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERK 430
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426
C P+ Y+ LI LSK G VK+ + E+M + G PN T+ + +EE+A+
Sbjct: 431 CKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAM 490
Query: 427 KLL 429
K++
Sbjct: 491 KIV 493
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 113/242 (46%), Gaps = 9/242 (3%)
Query: 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV--SLATMSTIMRRLVRGGRY 213
G+ Y ++D K +F E MD++ + + T ++R L + +
Sbjct: 256 GWYPDATTYTVLMDGYCKLGRFS---EAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKS 312
Query: 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFNI 271
+A F M + D+ ++D L + + V+ A ++ + +C+P + + +
Sbjct: 313 GEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMP-DNALLST 371
Query: 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331
LIH CK +V +A+K E F++G P +++Y I C + + + +M E+
Sbjct: 372 LIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERK 430
Query: 332 CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN 391
CKP+ TY +++ L K + E ++V E+M C P+ + + L L K G+ +DA
Sbjct: 431 CKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAM 490
Query: 392 EI 393
+I
Sbjct: 491 KI 492
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 177/366 (48%), Gaps = 4/366 (1%)
Query: 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFR 221
+YNT++D L K L EMD N G ++ T ++++R L GR+ DA
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMD--NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 315
Query: 222 GMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNILIHGWCKTR 280
M + + + S L+D VK + A K++ E K I ++ LI+G+C
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 375
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
++D+A+ + M + P+VV+Y I+ +C+ K + + +EM ++G + +TYT
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
++H +A++ + A V+++M SD LPD YS L+ L G+V+ A +FE +++
Sbjct: 436 TLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS 495
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
+ P++ TYN MI C + E+ L + KP+ TY ++ CRK +
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520
+ L M + D+GTY +L+R + G + EM S V ST ++
Sbjct: 556 DALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNM 615
Query: 521 LEKKRL 526
L RL
Sbjct: 616 LHDGRL 621
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 178/369 (48%), Gaps = 6/369 (1%)
Query: 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYD 214
G H Y+ +++ + + L ++ +M +L GY + T+++++ G R
Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKL--GYEPDIVTLNSLLNGFCHGNRIS 168
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNIL 272
DAV M + G + D+ + L+ L + N A + + K C P + I+
Sbjct: 169 DAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQP-DLVTYGIV 227
Query: 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332
++G CK +D A +K+M Q P VV Y I+ C K+ + EM KG
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Query: 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392
+P+V+TY ++ L + ++A ++ M P+ +S+LI K G++ +A +
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347
Query: 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452
++++M K+ + P++ TY+++I+ C + A + + M C P+ TY L+K C
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 407
Query: 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512
+ KR+ L M + + + TY +L+ G ++ + + A F++M+S G++P
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467
Query: 513 TYKMLEEKL 521
TY +L + L
Sbjct: 468 TYSILLDGL 476
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 168/363 (46%), Gaps = 2/363 (0%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
++ ++ + K KF L+ L ++M L + +L T S ++ R + A+ M
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISH-NLYTYSILINCFCRRSQLSLALAVLAKM 142
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC-IPLSSQIFNILIHGWCKTRKV 282
K G E D L+ L++ GN + A + + + S FN LIHG + +
Sbjct: 143 MKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRA 202
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV 342
+A + M +G PD+V+Y + C+ D LK+M++ +P V+ Y +
Sbjct: 203 SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262
Query: 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402
+ AL K +N+AL ++ +M + P+ Y+SLI L GR DA+ + DM ++ +
Sbjct: 263 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322
Query: 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNF 462
PNV+T++ +I + + A KL +M + PD TY+ L+ C R+
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382
Query: 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522
+ M D + TY +L++G ++ +++ F EM +G+V TY L
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFF 442
Query: 523 KKR 525
+ R
Sbjct: 443 QAR 445
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 154/330 (46%), Gaps = 11/330 (3%)
Query: 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYK 253
+ S+ S ++ + + ++D + M+ G+ + S+L++ + + + A
Sbjct: 78 FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 254 VFLEF------KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307
V + D + L+S L++G+C ++ DA + +M + G+ PD ++
Sbjct: 138 VLAKMMKLGYEPDIVTLNS-----LLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTL 192
Query: 308 IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367
I R + + M KGC+P ++TY IV++ L K I+ AL + +KM+
Sbjct: 193 IHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKI 252
Query: 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALK 427
P Y+++I L V DA +F +M +G+ PNV+TYN++I C +A +
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312
Query: 428 LLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487
LL M E P+ T++ L+ ++ ++ L M K + D TY+SL+ G
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372
Query: 488 ESGKLELACSFFEEMISKGIVPYHSTYKML 517
+L+ A FE MISK P TY L
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTL 402
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 135/299 (45%), Gaps = 4/299 (1%)
Query: 227 GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI-FNILIHGWCKTRKVDDA 285
GV D R +S+ + ++ A +F + P S + F+ L+ K K D
Sbjct: 44 GVRYDYRKISI---NRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLV 100
Query: 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA 345
++M G S ++ +Y+ I +CR L +M + G +P ++T +++
Sbjct: 101 ISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNG 160
Query: 346 LGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405
+I++A+ + +M PD+ +++LI L + R +A + + M +G P+
Sbjct: 161 FCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPD 220
Query: 406 VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT 465
++TY +++ C R + + AL LL+KME+ +P Y ++ C K + L T
Sbjct: 221 LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFT 280
Query: 466 HMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
M + + TY SL+R L G+ A +MI + I P T+ L + K+
Sbjct: 281 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 339
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 145/324 (44%), Gaps = 33/324 (10%)
Query: 77 RLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRR 136
R ++ SR+ S ++ +V S ++ + K+VEA K L ++ ++R
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFSALID-AFVKEGKLVEAEK---------LYDEMIKR 355
Query: 137 FSNDLTPAFGFFTWAKTQTGY-MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV 195
+ P FT++ G+ MH D L ++K M+EL+ D N
Sbjct: 356 ---SIDP--DIFTYSSLINGFCMH---------DRLDEAKH---MFELMISKDCFPN--- 395
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
+ T +T+++ + R D+ +E FR M + G+ +T + L+ + ++A VF
Sbjct: 396 -VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 256 LEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314
+ D + ++IL+ G C KV+ A + + + PD+ +Y IE C+
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA 514
Query: 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374
D + KG KP+V+TYT +M + EA ++ +MK + LPD+ Y
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTY 574
Query: 375 SSLIFILSKAGRVKDANEIFEDMK 398
++LI + G + E+ +M+
Sbjct: 575 NTLIRAHLRDGDKAASAELIREMR 598
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 204/443 (46%), Gaps = 59/443 (13%)
Query: 137 FSNDLTP--AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWE----LVKEMDEL 190
FS DL P A F W Y H+ Y +++ +L + ++++ ++K D +
Sbjct: 97 FSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSV 156
Query: 191 NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEH 250
+ L + R++ + R++ + G + L+++L + V+
Sbjct: 157 GDALYVL----DLCRKMNKDERFELKYKLIIG-----------CYNTLLNSLARFGLVDE 201
Query: 251 AYKVFLE-FKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309
+V++E +D + + +N +++G+CK V++A + + ++ + G PD +YT I
Sbjct: 202 MKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261
Query: 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
YC+ KD EM KGC+ + + YT ++H L A++I+EA+ ++ KMK D+C P
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP 321
Query: 370 DTSFYSSLIFILSKAGR-------VKD----------------------------ANEIF 394
Y+ LI L + R VK+ A E+
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454
M ++G++PNV+TYN +I+ C R E+A+ +++ ME P+ TY L+K C+
Sbjct: 382 GQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS 441
Query: 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTY 514
K + +L M + V D TY SL+ G SG + A M +G+VP TY
Sbjct: 442 NVHKAMG-VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTY 500
Query: 515 -KMLEEKLEKKRLGNAKERINKL 536
M++ + KR+ A + + L
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSL 523
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 182/379 (48%), Gaps = 5/379 (1%)
Query: 154 QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGR 212
+TG Y ++D L KF EL+ +M L G + ++ T + ++ + G
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQM--LEKGLMPNVITYNALINGYCKRGM 408
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI-FNI 271
+DAV+ M+ + +TR + L+ K N V A V + + L + +N
Sbjct: 409 IEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNS 467
Query: 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331
LI G C++ D A + + M +G PD +YT I+ C+ K + D +++KG
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527
Query: 332 CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN 391
P+V+ YT ++ KA +++EA + EKM S +CLP++ +++LI L G++K+A
Sbjct: 528 VNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEAT 587
Query: 392 EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451
+ E M K G+ P V T +I + ++A Q+M KPD TY ++
Sbjct: 588 LLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Query: 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH 511
CR+ R+ ++ M +N VS D TY+SL++G + G+ A + M G P
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707
Query: 512 STYKMLEEKLEKKRLGNAK 530
T+ L + L + + G K
Sbjct: 708 HTFLSLIKHLLEMKYGKQK 726
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 178/391 (45%), Gaps = 28/391 (7%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFRG 222
YN+++D +S F + L+ M++ G V T ++++ L + R ++A + F
Sbjct: 465 YNSLIDGQCRSGNFDSAYRLLSLMND--RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDS 522
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFNILIHGWCKTR 280
+++ GV + + L+D K V+ A+ + + K+C+P +S FN LIHG C
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLP-NSLTFNALIHGLCADG 581
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K+ +A ++M + G P V + T I ++ DF ++M G KP TYT
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
+ + ++ +A + KM+ + PD YSSLI G+ A ++ + M+
Sbjct: 642 TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDT 701
Query: 401 GVVPNVLTYNTMI---------------SSACARS---EEENALKLLQKMEEDLCKPDCE 442
G P+ T+ ++I CA S E + ++LL+KM E P+ +
Sbjct: 702 GCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAK 761
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKND-VSMDAGTYASLVRGLIESGKLELACSFFEE 501
+Y L+ C ++V + HM +N+ +S + +L+ + K A ++
Sbjct: 762 SYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDD 821
Query: 502 MISKGIVPYHSTYKMLEEKLEKKRLGNAKER 532
MI G +P + K+L L KK KER
Sbjct: 822 MICVGHLPQLESCKVLICGLYKK---GEKER 849
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 20/271 (7%)
Query: 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF 258
T +T ++ R GR DA + M++ GV D S L+ A+ V
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 259 KD--CIPLSSQIFNILIH-----------------GWCKTRKVDDAQKAMKEMFQQGFSP 299
+D C P +++ H + D + +++M + +P
Sbjct: 699 RDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTP 758
Query: 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQE-KGCKPSVITYTIVMHALGKAKQINEALKV 358
+ SY I C + R + MQ +G PS + + ++ K K+ NEA KV
Sbjct: 759 NAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKV 818
Query: 359 YEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA 418
+ M LP LI L K G + +F+++ + G + L + +I
Sbjct: 819 VDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGK 878
Query: 419 RSEEENALKLLQKMEEDLCKPDCETYAPLLK 449
+ E +L ME++ CK +TY+ L++
Sbjct: 879 QGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 217/472 (45%), Gaps = 22/472 (4%)
Query: 69 LAGWVESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEAL--------KG 120
L G+ S R++E + ++ ++ + + ++ + +K EA+ KG
Sbjct: 158 LNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKG 216
Query: 121 C--GVSVSNSLVEQTLRRFSNDLTPAFGFFT---WAKTQTGYMHTPEMYNTMVDVLGKSK 175
C + +V +R DL AF K + G + +YNT++D L K K
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDL--AFNLLNKMEQGKLEPGVL----IYNTIIDGLCKYK 270
Query: 176 KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235
L KEM E ++ T S+++ L GR+ DA M + + D
Sbjct: 271 HMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 329
Query: 236 SVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294
S L+D VK + A K++ E K I S ++ LI+G+C ++D+A++ + M
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389
Query: 295 QGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354
+ PDVV+Y I+ +C+ K + + +EM ++G + +TY I++ L +A +
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMIS 414
A +++++M SD P+ Y++L+ L K G+++ A +FE +++ + P + TYN MI
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509
Query: 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474
C + E+ L + KPD Y ++ CRK + + L M ++
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Query: 475 DAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526
++G Y +L+R + G E + +EM S G ST ++ L RL
Sbjct: 570 NSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRL 621
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 181/371 (48%), Gaps = 6/371 (1%)
Query: 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYD 214
G H Y+ +++ + + L ++ +M +L GY ++ T+S+++ R
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKL--GYEPNIVTLSSLLNGYCHSKRIS 168
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNIL 272
+AV M G + +T + L+ L N A + + K C P + ++
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQP-DLVTYGVV 227
Query: 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332
++G CK D A + +M Q P V+ Y I+ C+ K + KEM+ KG
Sbjct: 228 VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287
Query: 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392
+P+V+TY+ ++ L + ++A ++ M PD +S+LI K G++ +A +
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452
++++M K+ + P+++TY+++I+ C + A ++ + M C PD TY L+K C
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFC 407
Query: 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512
+ KR++ + M + + + TY L++GL ++G ++A F+EM+S G+ P
Sbjct: 408 KYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467
Query: 513 TYKMLEEKLEK 523
TY L + L K
Sbjct: 468 TYNTLLDGLCK 478
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 136/306 (44%), Gaps = 36/306 (11%)
Query: 248 VEHAYKVFLEFKDCIPLSSQI-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306
++ A +F E P S I F+ L+ K K D ++M G + +Y+
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
I +CR L +M + G +P+++T + +++ +K+I+EA+ + ++M
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426
P+T +++LI L + +A + + M +G P+++TY +++ C R + + A
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 427 KLLQKMEE---------------DLCK--------------------PDCETYAPLLKMC 451
LL KME+ LCK P+ TY+ L+
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Query: 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH 511
C R + LL+ M + ++ D T+++L+ ++ GKL A ++EM+ + I P
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 512 STYKML 517
TY L
Sbjct: 362 VTYSSL 367
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 110/237 (46%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K+DDA EM + P ++ ++ + + F V ++MQ G + TY+
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + Q+ AL V KM P+ SSL+ + R+ +A + + M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
G PN +T+NT+I ++ A+ L+ +M C+PD TY ++ C++ +
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
LL M + + Y +++ GL + ++ A + F+EM +KGI P TY L
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%)
Query: 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
++++A+ ++ +M P +S L+ ++K + + E M+ G+ N TY+
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470
+I+ C RS+ AL +L KM + +P+ T + LL C KR+ L+ MF
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
+ T+ +L+ GL K A + + M++KG P TY ++ L K+
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 234
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 8/314 (2%)
Query: 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKG----NSVEHAYKVF 255
M I R R G Y +++ M + G D +L L+KG ++ A +V
Sbjct: 92 MLKIFHRSCRSGNYIESLHLLETMVRKGYNPDV----ILCTKLIKGFFTLRNIPKAVRVM 147
Query: 256 LEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315
+ +N LI+G+CK ++DDA + + M + FSPD V+Y I C
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS 375
L ++ C+P+VITYTI++ A ++EALK+ ++M S PD Y+
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 376 SLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435
++I + K G V A E+ +++ +G P+V++YN ++ + + + E KL+ KM +
Sbjct: 268 TIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327
Query: 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELA 495
C P+ TY+ L+ CR +++ LL M + ++ DA +Y L+ G+L++A
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387
Query: 496 CSFFEEMISKGIVP 509
F E MIS G +P
Sbjct: 388 IEFLETMISDGCLP 401
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 190/394 (48%), Gaps = 13/394 (3%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
YN M+ L K L +++ ++ +N ++ T + ++ + G D+A++ M
Sbjct: 196 YNIMIGSLCSRGKLDLALKVLNQLLS-DNCQPTVITYTILIEATMLEGGVDEALKLMDEM 254
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNILIHGWCKTRK 281
G++ D + ++ + K V+ A+++ LE K C P +NIL+ K
Sbjct: 255 LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEP-DVISYNILLRALLNQGK 313
Query: 282 VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI 341
++ +K M +MF + P+VV+Y+ I CR+ + + LK M+EKG P +Y
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG 401
++ A + +++ A++ E M SD CLPD Y++++ L K G+ A EIF + + G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433
Query: 402 VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLN 461
PN +YNTM S+ + ++ AL ++ +M + PD TY ++ CR+ +
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493
Query: 462 FLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
LL M + TY ++ G ++ ++E A + E M+ G P +TY +L E +
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Query: 522 -------EKKRLGNAKERINKLLAHA--KEQKTF 546
E L N RI+ + ++ + +TF
Sbjct: 554 GFAGYRAEAMELANDLVRIDAISEYSFKRLHRTF 587
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 1/288 (0%)
Query: 230 KDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289
+DT+ L + + GN +E + + + + LI G+ R + A + M
Sbjct: 88 RDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM 147
Query: 290 KEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA 349
E+ ++ PDV +Y I +C+ L M+ K P +TY I++ +L
Sbjct: 148 -EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSR 206
Query: 350 KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTY 409
+++ ALKV ++ SD+C P Y+ LI G V +A ++ ++M +G+ P++ TY
Sbjct: 207 GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266
Query: 410 NTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469
NT+I C + A ++++ +E C+PD +Y LL+ + + + L+T MF
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326
Query: 470 NDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
+ TY+ L+ L GK+E A + + M KG+ P +Y L
Sbjct: 327 EKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
++G ++ + E M ++G P+V+ +I A+++++ +E+ +PD
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEK-FGQPDVF 159
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
Y L+ C+ R+ +L M D S D TY ++ L GKL+LA ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 503 ISKGIVPYHSTYKMLEE 519
+S P TY +L E
Sbjct: 220 LSDNCQPTVITYTILIE 236
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/427 (25%), Positives = 181/427 (42%), Gaps = 71/427 (16%)
Query: 182 ELVKEMDE--LNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238
EL +E E L+ G +++ A +S +R+ G +D E GMK YG+ D A +V
Sbjct: 253 ELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVF 312
Query: 239 MDTLVKGNSVEHAYKVFLEFK-DCIPLSSQIFNILIHGWCKTRKVDDAQKAM-------- 289
+D L K ++ A V + K I S + +I G+CK K ++A K +
Sbjct: 313 IDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPN 372
Query: 290 ------------------------KEMFQQGFSPDVVSYTCFIEHYC------------- 312
+E+F+ G PD V YT I+ YC
Sbjct: 373 IFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFG 432
Query: 313 ----------------------REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350
R + + M+ +G K V+TY +MH GK
Sbjct: 433 ALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTH 492
Query: 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
Q+N+ ++ ++M+S PD + Y+ LI + G + +ANEI ++ ++G VP+ L +
Sbjct: 493 QLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFT 552
Query: 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470
+I R + + A L M + KPD T + LL C+ +RM+ L +
Sbjct: 553 DVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDA 612
Query: 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAK 530
+ D Y +L+ G G +E AC M+ +G++P ST+ L LE KR N++
Sbjct: 613 GLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLEGKRFVNSE 672
Query: 531 ERINKLL 537
+ LL
Sbjct: 673 THASMLL 679
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/440 (20%), Positives = 189/440 (42%), Gaps = 37/440 (8%)
Query: 123 VSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVL----------- 171
+ + + L E+TL D + FF W++ G H+ + M+ +L
Sbjct: 113 IRILDDLFEETL-----DASIVLYFFRWSELWIGVEHSSRSISRMIHILVSGNMNYRAVD 167
Query: 172 ----------GKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR-LVRGGRYDDAVEAF 220
G+ + CL ++K++ E L T+ +I+ +R + + A++
Sbjct: 168 MLLCLVKKCSGEERSLCL---VMKDLFETRIDRRVLETVFSILIDCCIRERKVNMALKLT 224
Query: 221 RGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE--FKDCIPLSSQIFNILIHGWCK 278
+ ++G+ L+ +++ + +E A + F+E L++ + ++ I +C
Sbjct: 225 YKVDQFGIFPSRGVCISLLKEILRVHGLELA-REFVEHMLSRGRHLNAAVLSLFIRKYCS 283
Query: 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT 338
D + + M G PD+V++T FI+ C+ ++ L +++ G ++
Sbjct: 284 DGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVS 343
Query: 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398
+ V+ K + EA+K+ + P+ YSS + + G + A+ IF+++
Sbjct: 344 VSSVIDGFCKVGKPEEAIKLIHSFRLR---PNIFVYSSFLSNICSTGDMLRASTIFQEIF 400
Query: 399 KQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458
+ G++P+ + Y TMI C + A + + + P T L+ C R +
Sbjct: 401 ELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSIS 460
Query: 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML- 517
+ +M + +D TY +L+ G ++ +L +EM S GI P +TY +L
Sbjct: 461 DAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILI 520
Query: 518 EEKLEKKRLGNAKERINKLL 537
+ + + A E I++L+
Sbjct: 521 HSMVVRGYIDEANEIISELI 540
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 170/345 (49%), Gaps = 2/345 (0%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
Y T+V L K ++F + E++ EM L S A +S+++ L + G+ ++A+ + +
Sbjct: 300 YCTLVYGLCKVQEFEIGLEMMDEMLCLRFS-PSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNILIHGWCKTRKV 282
+GV + + L+D+L KG A +F K + + ++ILI +C+ K+
Sbjct: 359 VDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKL 418
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV 342
D A + EM G V Y I +C+ D + + EM K +P+V+TYT +
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402
M +IN+AL++Y +M P +++L+ L +AG ++DA ++F +M + V
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNF 462
PN +TYN MI C + A + L++M E PD +Y PL+ C +
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI 507
+ + K + ++ Y L+ G GKLE A S +EM+ +G+
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV 643
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 178/400 (44%), Gaps = 41/400 (10%)
Query: 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV--SLATMSTIMRRLVRGGR 212
TG P +Y T +L + L+ + VK +E+ V + T + ++ G
Sbjct: 499 TGKGIAPSIY-TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGD 557
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE--FKDCIPLSSQIFN 270
A E + M + G+ DT + L+ L A KVF++ K L+ +
Sbjct: 558 MSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYT 616
Query: 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330
L+HG+C+ K+++A +EM Q+G D+V Y I+ + KD + LKEM ++
Sbjct: 617 GLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDR 676
Query: 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390
G KP + YT ++ A K EA +++ M ++ C+P+ Y+++I L KAG V +A
Sbjct: 677 GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736
Query: 391 NEIFE--------------------------DMKK---------QGVVPNVLTYNTMISS 415
+ DM+K +G++ N TYN +I
Sbjct: 737 EVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRG 796
Query: 416 ACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD 475
C + E A +L+ +M D PDC TY ++ CR+ +K L M + + D
Sbjct: 797 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 856
Query: 476 AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYK 515
Y +L+ G +G++ A EM+ +G++P + T +
Sbjct: 857 RVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSR 896
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 156/337 (46%), Gaps = 3/337 (0%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
+L + ++ L +G ++ +A F M K G+ + S+L+D + ++ A
Sbjct: 366 NLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFL 425
Query: 256 LEFKDC-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314
E D + LS +N LI+G CK + A+ M EM + P VV+YT + YC +
Sbjct: 426 GEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSK 485
Query: 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374
K EM KG PS+ T+T ++ L +A I +A+K++ +M + P+ Y
Sbjct: 486 GKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTY 545
Query: 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434
+ +I + G + A E ++M ++G+VP+ +Y +I C + A + + +
Sbjct: 546 NVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK 605
Query: 435 DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL 494
C+ + Y LL CR+ +++ + M + V +D Y L+ G ++ +L
Sbjct: 606 GNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKL 665
Query: 495 ACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKE 531
+EM +G+ P Y + + K + G+ KE
Sbjct: 666 FFGLLKEMHDRGLKPDDVIYTSMIDA--KSKTGDFKE 700
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 151/330 (45%), Gaps = 3/330 (0%)
Query: 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--L 256
T+S ++ LV+ + A+E F M G+ D + ++ +L + + A ++ +
Sbjct: 194 TLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM 253
Query: 257 EFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316
E C ++ +N+LI G CK +KV +A K++ + PDVV+Y + C+ ++
Sbjct: 254 EATGC-DVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQE 312
Query: 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
F + + EM PS + ++ L K +I EAL + +++ P+ Y++
Sbjct: 313 FEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNA 372
Query: 377 LIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436
LI L K + +A +F+ M K G+ PN +TY+ +I C R + + AL L +M +
Sbjct: 373 LIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTG 432
Query: 437 CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELAC 496
K Y L+ C+ + + M + TY SL+ G GK+ A
Sbjct: 433 LKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKAL 492
Query: 497 SFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526
+ EM KGI P T+ L L + L
Sbjct: 493 RLYHEMTGKGIAPSIYTFTTLLSGLFRAGL 522
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 152/354 (42%), Gaps = 10/354 (2%)
Query: 171 LGKSKKFCLMWELVKEMDELN---NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG 227
L K + F L EL +M + + Y+ + ++R L A E M+ G
Sbjct: 202 LVKFRHFGLAMELFNDMVSVGIRPDVYI----YTGVIRSLCELKDLSRAKEMIAHMEATG 257
Query: 228 VEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285
+ + +VL+D L K V A + L KD P + L++G CK ++ +
Sbjct: 258 CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKP-DVVTYCTLVYGLCKVQEFEIG 316
Query: 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA 345
+ M EM FSP + + +E + + + +K + + G P++ Y ++ +
Sbjct: 317 LEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDS 376
Query: 346 LGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405
L K ++ +EA ++++M P+ YS LI + + G++ A +M G+ +
Sbjct: 377 LCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLS 436
Query: 406 VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT 465
V YN++I+ C + A + +M +P TY L+ C K ++ L
Sbjct: 437 VYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYH 496
Query: 466 HMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519
M ++ T+ +L+ GL +G + A F EM + P TY ++ E
Sbjct: 497 EMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 23/309 (7%)
Query: 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279
F G+ + G + T + +L+ LVK N A + S +FN+L + K
Sbjct: 93 FLGLHR-GFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYEKC 151
Query: 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL--KEMQEK-GCKPSV 336
+ + + I+HY R + R +D L K M K P V
Sbjct: 152 KLSSSSS-----------------FDLLIQHYVRSR--RVLDGVLVFKMMITKVSLLPEV 192
Query: 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396
T + ++H L K + A++++ M S PD Y+ +I L + + A E+
Sbjct: 193 RTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAH 252
Query: 397 MKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR 456
M+ G N++ YN +I C + + A+ + + + KPD TY L+ C+ +
Sbjct: 253 MEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQE 312
Query: 457 MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKM 516
++ ++ M S +SLV GL + GK+E A + + ++ G+ P Y
Sbjct: 313 FEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNA 372
Query: 517 LEEKLEKKR 525
L + L K R
Sbjct: 373 LIDSLCKGR 381
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 38/230 (16%)
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIPLSSQIFNILIHGWCKTR 280
M G++ D + ++D K + A+ ++ + + C+P + + +I+G CK
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVP-NEVTYTAVINGLCKAG 731
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCF--------------------------------- 307
V++A+ +M P+ V+Y CF
Sbjct: 732 FVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYN 791
Query: 308 --IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365
I +CR+ + + + M G P ITYT +++ L + + +A++++ M
Sbjct: 792 MLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEK 851
Query: 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISS 415
PD Y++LI AG + A E+ +M +QG++PN T T S+
Sbjct: 852 GIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTTTSN 901
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 168/330 (50%), Gaps = 1/330 (0%)
Query: 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE 257
T+ +++ R R DAV M + G + D A + ++D+L K V A+ F E
Sbjct: 156 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215
Query: 258 F-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316
+ I + + L++G C + + DA + + +M ++ +P+V++Y+ ++ + +
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Query: 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
+ + +EM P ++TY+ +++ L +I+EA ++++ M S CL D Y++
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335
Query: 377 LIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436
LI KA RV+D ++F +M ++G+V N +TYNT+I + + A + +M+
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395
Query: 437 CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELAC 496
PD TY LL C ++ + M K ++ +D TY +++RG+ ++GK+E A
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455
Query: 497 SFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526
S F + KG+ P TY + L K L
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 166/330 (50%), Gaps = 11/330 (3%)
Query: 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYK 253
+ S+ + ++ +V+ +YD + + M+ G+ D +++++ V A
Sbjct: 82 FPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALS 141
Query: 254 VFLEF------KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307
+ + D + + S L++G+C+ +V DA + +M + G+ PD+V+Y
Sbjct: 142 ILGKMLKLGYEPDRVTIGS-----LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAI 196
Query: 308 IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367
I+ C+ K D KE++ KG +P+V+TYT +++ L + + ++A ++ M
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256
Query: 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALK 427
P+ YS+L+ K G+V +A E+FE+M + + P+++TY+++I+ C + A +
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316
Query: 428 LLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487
+ M C D +Y L+ C+ KR++ L M + + + TY +L++G
Sbjct: 317 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376
Query: 488 ESGKLELACSFFEEMISKGIVPYHSTYKML 517
++G ++ A FF +M GI P TY +L
Sbjct: 377 QAGDVDKAQEFFSQMDFFGISPDIWTYNIL 406
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/419 (25%), Positives = 184/419 (43%), Gaps = 40/419 (9%)
Query: 100 ISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMH 159
+ K+L Y+ PD+V SLV RR N ++ A + GY
Sbjct: 143 LGKMLKLGYE-PDRVTIG----------SLVNGFCRR--NRVSDAVSLVD-KMVEIGYKP 188
Query: 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219
YN ++D L K+K+ ++ KE+ E ++ T + ++ L R+ DA
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNILIHGWCK 278
M K + + S L+D VK V A ++F E + I ++ LI+G C
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK---EMQEKGCKPS 335
++D+A + M +G DVVSY I +C+ K +V+D +K EM ++G +
Sbjct: 308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAK---RVEDGMKLFREMSQRGLVSN 364
Query: 336 VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395
+TY ++ +A +++A + + +M PD Y+ L+ L G ++ A IFE
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424
Query: 396 DMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK 455
DM+K+ + +++TY T+I C + E A L + KPD TY ++ C K
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484
Query: 456 RMKVLNFLLTHM-----FKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVP 509
+ + L T M KND ++ G + L+ ++M+S G P
Sbjct: 485 LLHEVEALYTKMKQEGLMKNDCTL-------------SDGDITLSAELIKKMLSCGYAP 530
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 4/248 (1%)
Query: 278 KTR----KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333
KTR K++DA +M + P +V + + + K + V K+M+ G +
Sbjct: 58 KTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR 117
Query: 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEI 393
+ T+ IV++ Q++ AL + KM PD SL+ + RV DA +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 394 FEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453
+ M + G P+++ YN +I S C +A +++E +P+ TY L+ C
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237
Query: 454 KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHST 513
R LL+ M K ++ + TY++L+ +++GK+ A FEEM+ I P T
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297
Query: 514 YKMLEEKL 521
Y L L
Sbjct: 298 YSSLINGL 305
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 3/222 (1%)
Query: 313 REKDFRKVD--DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD 370
R +D + D D +M + PS++ + ++ A+ K K+ + + + +KM+ D
Sbjct: 60 RLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRND 119
Query: 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430
++ +I +V A I M K G P+ +T ++++ C R+ +A+ L+
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179
Query: 431 KMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESG 490
KM E KPD Y ++ C+ KR+ + + + + TY +LV GL S
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 239
Query: 491 KLELACSFFEEMISKGIVPYHSTYK-MLEEKLEKKRLGNAKE 531
+ A +MI K I P TY +L+ ++ ++ AKE
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 177/366 (48%), Gaps = 2/366 (0%)
Query: 153 TQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR 212
+TG+ Y ++ V+ KS + L EL+++M+E + S I+ L + G
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE-RKIKLDAVKYSIIIDGLCKDGS 262
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNI 271
D+A F M+ G + D + L+ + K+ + K I F+
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322
Query: 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331
LI + K K+ +A++ KEM Q+G SPD V+YT I+ +C+E K + L M KG
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382
Query: 332 CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN 391
C P++ T+ I+++ KA I++ L+++ KM + DT Y++LI + G+++ A
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442
Query: 392 EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451
E+F++M + V P++++Y ++ C E E AL++ +K+E+ + D Y ++
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502
Query: 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH 511
C ++ L + V D TY ++ GL + G L A F +M G P
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562
Query: 512 STYKML 517
TY +L
Sbjct: 563 CTYNIL 568
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 176/394 (44%), Gaps = 37/394 (9%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
++ + V+ ++K++ L+ +L K+M EL +L T+S ++ R + A A +
Sbjct: 75 FSRLFSVVARTKQYDLVLDLCKQM-ELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKI 133
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI-FNILIHGWCKTRKV 282
K G E DT S L++ L V A ++ + + I N L++G C KV
Sbjct: 134 IKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKV 193
Query: 283 DDAQKAMKEMFQQGFSP-----------------------------------DVVSYTCF 307
DA + M + GF P D V Y+
Sbjct: 194 SDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSII 253
Query: 308 IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367
I+ C++ + EM+ KG K +I YT ++ A + ++ K+ M
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313
Query: 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALK 427
PD +S+LI K G++++A E+ ++M ++G+ P+ +TY ++I C ++ + A
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373
Query: 428 LLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487
+L M C P+ T+ L+ C+ + L M V D TY +L++G
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433
Query: 488 ESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
E GKLE+A F+EM+S+ + P +YK+L + L
Sbjct: 434 ELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGL 467
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 143/323 (44%), Gaps = 39/323 (12%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
Y+ ++D L K + L EM E+ + +T++R GR+DD + R M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEM-EIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF------------------------- 258
K + D A S L+D VK + A ++ E
Sbjct: 309 IKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368
Query: 259 ------------KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306
K C P + + FNILI+G+CK +DD + ++M +G D V+Y
Sbjct: 369 DKANHMLDLMVSKGCGP-NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNT 427
Query: 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
I+ +C + +EM + +P +++Y I++ L + +AL+++EK++
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426
D Y+ +I + A +V DA ++F + +GV P+V TYN MI C + A
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547
Query: 427 KLLQKMEEDLCKPDCETYAPLLK 449
L +KMEED P+ TY L++
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIR 570
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 117/226 (51%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K DDA +EM + P ++ ++ R K + V D K+M+ KG ++ T +
Sbjct: 52 KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + ++++ A K+ PDT +S+LI L GRV +A E+ + M +
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
G P ++T N +++ C + +A+ L+ +M E +P+ TY P+LK+ C+ + +
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506
LL M + + +DA Y+ ++ GL + G L+ A + F EM KG
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 192/410 (46%), Gaps = 16/410 (3%)
Query: 55 FDSQSPDEDFVIPSLAGWVESHRLNEKSRISSRVLSE-----NHETDVDKISKILSKQYQ 109
+ S D+ +I S+ G+ + R E +++ R N V+ +S IL ++++
Sbjct: 252 YSVHSSDDRTIISSVEGFGKPSR--EMMKVTPRTAPTPRQHCNPGYVVENVSSIL-RRFK 308
Query: 110 SPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVD 169
EAL G + Q L++ N A GFF W K Q G+ H Y TMV
Sbjct: 309 WGHAAEEALHNFGFRMDAYQANQVLKQMDN-YANALGFFYWLKRQPGFKHDGHTYTTMVG 367
Query: 170 VLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV 228
LG++K+F + +L+ EM + +G + T + ++ R +A+ F M++ G
Sbjct: 368 NLGRAKQFGEINKLLDEM--VRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGC 425
Query: 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIF--NILIHGWCKTRKVDDAQ 286
E D L+D K ++ A ++ ++ LS F +++I+ K + A
Sbjct: 426 EPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEA-GLSPDTFTYSVIINCLGKAGHLPAAH 484
Query: 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHAL 346
+ EM QG +P++V++ I + + +++ ++MQ G +P +TY+IVM L
Sbjct: 485 RLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVL 544
Query: 347 GKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406
G + EA V+ +M+ + +PD Y L+ + KAG V A + ++ M + G+ PNV
Sbjct: 545 GHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNV 604
Query: 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR 456
T N+++S+ A LLQ M P +TY LL CC R
Sbjct: 605 PTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLS-CCTDAR 653
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 164/350 (46%), Gaps = 11/350 (3%)
Query: 191 NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT-RALSVLMDTLVKGNSVE 249
N GYV + +S+I+RR G ++A+ F G D +A VL N++
Sbjct: 292 NPGYV-VENVSSILRRFKWGHAAEEALHNF------GFRMDAYQANQVLKQMDNYANALG 344
Query: 250 HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309
Y +L+ + + ++ + ++ + K + EM + G P+ V+Y I
Sbjct: 345 FFY--WLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIH 402
Query: 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
Y R ++ + +MQE GC+P +TY ++ KA ++ A+ +Y++M+ P
Sbjct: 403 SYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSP 462
Query: 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429
DT YS +I L KAG + A+ +F +M QG PN++T+N MI+ E ALKL
Sbjct: 463 DTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLY 522
Query: 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES 489
+ M+ +PD TY+ ++++ ++ + M + + D Y LV ++
Sbjct: 523 RDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKA 582
Query: 490 GKLELACSFFEEMISKGIVPYHST-YKMLEEKLEKKRLGNAKERINKLLA 538
G ++ A +++ M+ G+ P T +L L R+ A + +LA
Sbjct: 583 GNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLA 632
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 170/333 (51%), Gaps = 6/333 (1%)
Query: 147 FFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR 206
FF K G + Y +++ L K+ +E+ ++M E + + +L T + +M +
Sbjct: 221 FFEMGKL--GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQE-DGVFPNLYTYNCVMNQ 277
Query: 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFK-DCIPLS 265
L + GR DA + F M++ GV + + L+ L + + A KV + K D I +
Sbjct: 278 LCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPN 337
Query: 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325
+N LI G+C K+ A +++ +G SP +V+Y + +CR+ D +K
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVK 397
Query: 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385
EM+E+G KPS +TYTI++ ++ + +A+++ M+ +PD YS LI G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKG 457
Query: 386 RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYA 445
++ +A+ +F+ M ++ PN + YNTMI C ALKLL++MEE P+ +Y
Sbjct: 458 QMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYR 517
Query: 446 PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478
++++ C++++ K L+ M D +D T
Sbjct: 518 YMIEVLCKERKSKEAERLVEKMI--DSGIDPST 548
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 153/316 (48%)
Query: 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC 261
I+ V+ + ++ F M G + + L+ +V +S + F E K
Sbjct: 99 VIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSK 158
Query: 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321
+ L F ILI G C+ +++ + + E+ + GFSP+VV YT I+ C++ + K
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK 218
Query: 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381
D EM + G + TYT++++ L K + ++YEKM+ D P+ Y+ ++ L
Sbjct: 219 DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278
Query: 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441
K GR KDA ++F++M+++GV N++TYNT+I C + A K++ +M+ D P+
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEE 501
TY L+ C ++ L + +S TY LV G G A +E
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 502 MISKGIVPYHSTYKML 517
M +GI P TY +L
Sbjct: 399 MEERGIKPSKVTYTIL 414
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 167/366 (45%), Gaps = 7/366 (1%)
Query: 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS--TIMRRLVRGGR 212
G++ +N ++ + S F W E N V L S +++ G
Sbjct: 123 NGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE----NKSKVVLDVYSFGILIKGCCEAGE 178
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KDCIPLSSQIFNI 271
+ + + + ++G + + L+D K +E A +F E K + + + + +
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238
Query: 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331
LI+G K + ++M + G P++ +Y C + C++ + EM+E+G
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERG 298
Query: 332 CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN 391
+++TY ++ L + ++NEA KV ++MKSD P+ Y++LI G++ A
Sbjct: 299 VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Query: 392 EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451
+ D+K +G+ P+++TYN ++S C + + A K++++MEE KP TY L+
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTF 418
Query: 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH 511
R M+ L M + + D TY+ L+ G G++ A F+ M+ K P
Sbjct: 419 ARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNE 478
Query: 512 STYKML 517
Y +
Sbjct: 479 VIYNTM 484
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 172/355 (48%), Gaps = 4/355 (1%)
Query: 181 WELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239
++L+ E+ E G+ ++ +T++ + G + A + F M K G+ + R +VL+
Sbjct: 183 FDLLIELTEF--GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI 240
Query: 240 DTLVKGNSVEHAYKVFLEFK-DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298
+ L K + ++++ + + D + + +N +++ CK + DA + EM ++G S
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS 300
Query: 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKV 358
++V+Y I CRE + + + +M+ G P++ITY ++ ++ +AL +
Sbjct: 301 CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 359 YEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA 418
+KS P Y+ L+ + G A ++ ++M+++G+ P+ +TY +I +
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420
Query: 419 RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478
E A++L MEE PD TY+ L+ C K +M + L M + + +
Sbjct: 421 SDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVI 480
Query: 479 YASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERI 533
Y +++ G + G A +EM K + P ++Y+ + E L K+R ER+
Sbjct: 481 YNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERL 535
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 57/332 (17%)
Query: 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFN----------------------ILIHGWCKT 279
L+ GN HA + L+ + SQ F ++I+ + ++
Sbjct: 49 LLSGNLFSHAQSLLLQVISG-KIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQS 107
Query: 280 RKVDDAQKAMKEMFQQGFSP----------------------------------DVVSYT 305
+ ++ + EM GF P DV S+
Sbjct: 108 QSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFG 167
Query: 306 CFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365
I+ C + K D L E+ E G P+V+ YT ++ K +I +A ++ +M
Sbjct: 168 ILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKL 227
Query: 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENA 425
+ + Y+ LI L K G K E++E M++ GV PN+ TYN +++ C ++A
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287
Query: 426 LKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG 485
++ +M E + TY L+ CR+ ++ N ++ M + ++ + TY +L+ G
Sbjct: 288 FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347
Query: 486 LIESGKLELACSFFEEMISKGIVPYHSTYKML 517
GKL A S ++ S+G+ P TY +L
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNIL 379
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 122/473 (25%), Positives = 214/473 (45%), Gaps = 65/473 (13%)
Query: 124 SVSNSLVEQTLRRFSNDLTPAFG--FFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMW 181
++S + V QTLR PA G FF W + G+ H + + M++ LG+++ +
Sbjct: 65 TISRTTVLQTLRLIK---VPADGLRFFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVAR 120
Query: 182 ELVKEMDELNNGYVSLAT--MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239
+ ++ +NG V L ++++R G + ++V+ F+ MK+ G+ + L+
Sbjct: 121 NFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLL 180
Query: 240 DTLVKGNSVEHAYKVFLEFKDCIPLS--SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF 297
L+K A+ +F E + ++ S FN LI+G+CK VD+A + K+M
Sbjct: 181 SILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHC 240
Query: 298 SPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG--CKPSVITYTIVMHALGKAKQINEA 355
+PDVV+Y I+ CR + + L M +K P+V++YT ++ ++I+EA
Sbjct: 241 NPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEA 300
Query: 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGR---VKD----------------------- 389
+ V+ M S P+ Y++LI LS+A R +KD
Sbjct: 301 VLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILI 360
Query: 390 -----------ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE---- 434
A ++F++M + P+ +Y+ +I + C R+E + A L ++ E
Sbjct: 361 KAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVL 420
Query: 435 ---DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGK 491
D CKP Y P+ + C + K + + K V D +Y +L+ G GK
Sbjct: 421 LGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGHCREGK 479
Query: 492 LELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQK 544
+ A M+ + VP TY++L + L K +G A LLAH Q+
Sbjct: 480 FKPAYELLVLMLRREFVPDLETYELLIDGLLK--IGEA------LLAHDTLQR 524
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 159/389 (40%), Gaps = 42/389 (10%)
Query: 127 NSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEM--YNTMVDVLGKSKKFCLMWELV 184
NS+V++ R F K Y P++ YNT++D L ++ K + ++
Sbjct: 222 NSMVDEAFRIF--------------KDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVL 267
Query: 185 KEM-DELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243
M + + + ++ + +T++R D+AV F M G++ + +V +TL+
Sbjct: 268 SGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPN----AVTYNTLI 323
Query: 244 KGNSVEHAYKVFLEFKDCIPLSSQ----------IFNILIHGWCKTRKVDDAQKAMKEMF 293
KG S H Y E KD + + FNILI C +D A K +EM
Sbjct: 324 KGLSEAHRYD---EIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEML 380
Query: 294 QQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-------CKPSVITYTIVMHAL 346
PD SY+ I C +F + + E+ EK CKP Y + L
Sbjct: 381 NMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYL 440
Query: 347 GKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406
+ +A KV+ ++ + D Y +LI + G+ K A E+ M ++ VP++
Sbjct: 441 CANGKTKQAEKVFRQLMKRG-VQDPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDL 499
Query: 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTH 466
TY +I E A LQ+M P T+ +L ++K L+T
Sbjct: 500 ETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTL 559
Query: 467 MFKNDVSMDAGTYASLVRGLIESGKLELA 495
M + + + +VR L S + E A
Sbjct: 560 MLEKRIRQNIDLSTQVVRLLFSSAQKEKA 588
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 210/450 (46%), Gaps = 25/450 (5%)
Query: 69 LAGWVESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEAL--------KG 120
L G+ +R++E + +++ ++ D + ++ +Q +K EA+ KG
Sbjct: 152 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH-NKASEAVALVERMVVKG 210
Query: 121 C--GVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPE-MYNTMVDVLGKSKKF 177
C + +++ +R DL K + G + +YNT++D L K K
Sbjct: 211 CQPDLVTYGAVINGLCKRGEPDLALNL----LNKMEKGKIEADVVIYNTIIDGLCKYKHM 266
Query: 178 CLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV 237
++L +M E + T + ++ L GR+ DA M + + D +
Sbjct: 267 DDAFDLFNKM-ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNA 325
Query: 238 LMDTLVKGNSVEHAYKVFLEF---KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294
L+D VK + A K++ E K C P +N LI G+CK ++V++ + +EM Q
Sbjct: 326 LIDAFVKEGKLVEAEKLYDEMVKSKHCFP-DVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384
Query: 295 QGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354
+G + V+YT I + + +D K+M G P ++TY I++ L +
Sbjct: 385 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVET 444
Query: 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMIS 414
AL V+E M+ D D Y+++I L KAG+V+D ++F + +GV PNV+TY TM+S
Sbjct: 445 ALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 504
Query: 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474
C + +E A L +M+ED P+ TY L++ R L+ M +
Sbjct: 505 GFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAG 564
Query: 475 DAGTYASLVRGLIESGKLELACSFFEEMIS 504
DA T+ LV ++ G+L+ + F +M+S
Sbjct: 565 DASTFG-LVTNMLHDGRLDKS---FLDMLS 590
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 158/329 (48%), Gaps = 4/329 (1%)
Query: 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-- 258
+TI+ L + DDA + F M+ G++ D + L+ L A ++ +
Sbjct: 254 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313
Query: 259 KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS-PDVVSYTCFIEHYCREKDF 317
K+ P FN LI + K K+ +A+K EM + PDVV+Y I+ +C+ K
Sbjct: 314 KNINP-DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372
Query: 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377
+ + +EM ++G + +TYT ++H +A+ + A V+++M SD PD Y+ L
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNIL 432
Query: 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437
+ L G V+ A +FE M+K+ + +++TY TMI + C + E+ L +
Sbjct: 433 LDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGV 492
Query: 438 KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497
KP+ TY ++ CRK + + L M ++ ++GTY +L+R + G +
Sbjct: 493 KPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAE 552
Query: 498 FFEEMISKGIVPYHSTYKMLEEKLEKKRL 526
+EM S G ST+ ++ L RL
Sbjct: 553 LIKEMRSCGFAGDASTFGLVTNMLHDGRL 581
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 156/333 (46%), Gaps = 12/333 (3%)
Query: 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC-IP 263
R++++ + DDA+ F M K S L+ + K N + + + ++ I
Sbjct: 48 RKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGIS 107
Query: 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323
+ ++I I+ +C+ ++ A + +M + G+ P +V+ + +C +
Sbjct: 108 HNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVAL 167
Query: 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK 383
+ +M E G +P +T+T ++H L + + +EA+ + E+M C PD Y ++I L K
Sbjct: 168 VDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCK 227
Query: 384 AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET 443
G A + M+K + +V+ YNT+I C ++A L KME KPD T
Sbjct: 228 RGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFT 287
Query: 444 YAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503
Y PL+ C R + LL+ M + +++ D + +L+ ++ GKL A ++EM+
Sbjct: 288 YNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMV 347
Query: 504 SK-----GIVPYHST------YKMLEEKLEKKR 525
+V Y++ YK +EE +E R
Sbjct: 348 KSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFR 380
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 174/351 (49%), Gaps = 4/351 (1%)
Query: 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFL 256
L T T++ L + G D A+ + M+K +E D + ++D L +V A +F
Sbjct: 220 LFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFT 279
Query: 257 EFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315
E + I + +N LI C + DA + + +M ++ +P+VV+++ I+ + +E
Sbjct: 280 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 339
Query: 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS 375
+ + EM ++ P + TY+ +++ +++EA ++E M S DC P+ Y+
Sbjct: 340 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 399
Query: 376 SLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435
+LI KA RV++ E+F +M ++G+V N +TYNT+I + + A K+ +KM D
Sbjct: 400 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD 459
Query: 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELA 495
PD TY+ LL C+ +++ + ++ K+ + D TY ++ G+ ++GK+E
Sbjct: 460 GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDG 519
Query: 496 CSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQKTF 546
F + KG+ P Y + +K L KE + L KE T
Sbjct: 520 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGL---KEEADALFREMKEDGTL 567
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 176/366 (48%), Gaps = 4/366 (1%)
Query: 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFR 221
+Y T++D L K L EMD N G ++ T ++++R L GR+ DA
Sbjct: 257 IYTTIIDALCNYKNVNDALNLFTEMD--NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 314
Query: 222 GMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNILIHGWCKTR 280
M + + + S L+D VK + A K++ E K I ++ LI+G+C
Sbjct: 315 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
++D+A+ + M + P+VV+Y I+ +C+ K + + +EM ++G + +TY
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 434
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
++ L +A + A K+++KM SD PD YS L+ L K G+++ A +FE ++K
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
+ P++ TYN MI C + E+ L + KP+ Y ++ CRK +
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520
+ L M ++ ++GTY +L+R + G + +EM S G V ST M+
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINM 614
Query: 521 LEKKRL 526
L RL
Sbjct: 615 LHDGRL 620
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 10/363 (2%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
+N ++ + K KF L+ L + M L Y L + + ++ R + A+ M
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISY-DLYSYNILINCFCRRSQLPLALAVLGKM 141
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF-----LEFKDCIPLSSQIFNILIHGWCK 278
K G E D LS L++ G + A + +E++ ++ FN LIHG
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP----NTVTFNTLIHGLFL 197
Query: 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT 338
K +A + M +G PD+ +Y + C+ D LK+M++ + V+
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257
Query: 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398
YT ++ AL K +N+AL ++ +M + P+ Y+SLI L GR DA+ + DM
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 399 KQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458
++ + PNV+T++ +I + + A KL +M + PD TY+ L+ C R+
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377
Query: 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLE 518
+ M D + TY +L++G ++ ++E F EM +G+V TY L
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 519 EKL 521
+ L
Sbjct: 438 QGL 440
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 2/301 (0%)
Query: 248 VEHAYKVFLEFKDCIPLSSQI-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306
++ A +F E PL S + FN L+ K K D + M S D+ SY
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
I +CR L +M + G +P ++T + +++ K+I+EA+ + ++M +
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426
P+T +++LI L + +A + + M +G P++ TY T+++ C R + + AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 427 KLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486
LL+KME+ + D Y ++ C K + L T M + + TY SL+R L
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK-RLGNAKERINKLLAHAKEQKT 545
G+ A +MI + I P T+ L + K+ +L A++ ++++ + +
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 546 F 546
F
Sbjct: 361 F 361
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 163/355 (45%), Gaps = 33/355 (9%)
Query: 77 RLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRR 136
R ++ SR+ S ++ +V S ++ + K+VEA K L ++ ++R
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALID-AFVKEGKLVEAEK---------LYDEMIKR 354
Query: 137 FSNDLTPAFGFFTWAKTQTGY-MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV 195
+ P FT++ G+ MH D L ++K M+EL+ D N
Sbjct: 355 ---SIDP--DIFTYSSLINGFCMH---------DRLDEAKH---MFELMISKDCFPN--- 394
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
+ T +T+++ + R ++ +E FR M + G+ +T + L+ L + + A K+F
Sbjct: 395 -VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453
Query: 256 LEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314
+ D +P ++IL+ G CK K++ A + + + PD+ +Y IE C+
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513
Query: 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374
D + KG KP+VI YT ++ + EA ++ +MK D LP++ Y
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 573
Query: 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429
++LI + G + E+ ++M+ G V + T + +I+ E++ L++L
Sbjct: 574 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEML 628
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 102/237 (43%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K+DDA EM Q P +V + + + F V + MQ + +Y
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + Q+ AL V KM PD SSL+ R+ +A + + M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
PN +T+NT+I ++ A+ L+ +M C+PD TY ++ C++ + +
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
LL M K + D Y +++ L + A + F EM +KGI P TY L
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 84/174 (48%)
Query: 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
++++A+ ++ +M LP ++ L+ ++K + + E M+ + ++ +YN
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470
+I+ C RS+ AL +L KM + +PD T + LL C KR+ L+ MF
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
+ + T+ +L+ GL K A + + M+++G P TY + L K+
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 233
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 184/392 (46%), Gaps = 7/392 (1%)
Query: 153 TQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR 212
+ GY + T+V L + K LV+ M + L T ++ L + G
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM-VVKGCQPDLVTYGAVINGLCKRGE 220
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNI- 271
D A+ M+K +E D S ++D+L K V+ A +F E D + +F
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKGIRPDVFTYS 279
Query: 272 -LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330
LI C + DA + + +M ++ +P+VV++ I+ + +E + + EM ++
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339
Query: 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390
P+++TY +++ +++EA +++ M S DCLPD Y++LI KA +V D
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399
Query: 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKM 450
E+F DM ++G+V N +TY T+I S+ +NA + ++M D P+ TY LL
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459
Query: 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY 510
C+ +++ + ++ K+ + D TY + G+ ++GK+E F + KG+ P
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519
Query: 511 HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542
Y + KK L KE L KE
Sbjct: 520 VIAYNTMISGFCKKGL---KEEAYTLFIKMKE 548
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 212/471 (45%), Gaps = 20/471 (4%)
Query: 69 LAGWVESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEAL--------KG 120
L G+ +R++E + +++ ++ D + ++ +Q +K EA+ KG
Sbjct: 142 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH-NKASEAVALVERMVVKG 200
Query: 121 C--GVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPE-MYNTMVDVLGKSKKF 177
C + +++ +R DL K + G + +Y+T++D L K +
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNL----LNKMEKGKIEADVVIYSTVIDSLCKYRHV 256
Query: 178 CLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS 236
L EMD N G + T S+++ L GR+ DA M + + + +
Sbjct: 257 DDALNLFTEMD--NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFN 314
Query: 237 VLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295
L+D K + A K+F E + I + +N LI+G+C ++D+AQ+ M +
Sbjct: 315 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374
Query: 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355
PDVV+Y I +C+ K + ++M +G + +TYT ++H +A + A
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434
Query: 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISS 415
V+++M SD P+ Y++L+ L K G+++ A +FE ++K + P++ TYN M
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494
Query: 416 ACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD 475
C + E+ L + KPD Y ++ C+K + L M ++ D
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
Query: 476 AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526
+GTY +L+R + G + +EM S STY ++ + L RL
Sbjct: 555 SGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRL 605
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 153/325 (47%), Gaps = 1/325 (0%)
Query: 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYK 253
+ S+ S ++ + + ++D + M+ GV + +++++ L + + + A
Sbjct: 62 FPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALA 121
Query: 254 VFLEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312
+ + K S N L++G+C ++ +A + +M + G+ PD V++T +
Sbjct: 122 ILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 181
Query: 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTS 372
+ + ++ M KGC+P ++TY V++ L K + + AL + KM+ D
Sbjct: 182 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 241
Query: 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432
YS++I L K V DA +F +M +G+ P+V TY+++IS C +A +LL M
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492
E P+ T+ L+ ++ ++ L M + + + TY SL+ G +L
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 493 ELACSFFEEMISKGIVPYHSTYKML 517
+ A F M+SK +P TY L
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTL 386
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 45/380 (11%)
Query: 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFR 221
+YNT++D L K K L EMD N G + T S+++ L GR+ DA
Sbjct: 260 IYNTIIDGLCKYKHMDDALNLFTEMD--NKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 317
Query: 222 GMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF----------------------- 258
M + + + S L+D VK + A K++ E
Sbjct: 318 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377
Query: 259 --------------KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSY 304
KDC P + ++ LI G+CK ++V++ + +EM Q+G + V+Y
Sbjct: 378 RLDEAKHMFELMISKDCFP-NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436
Query: 305 TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364
T I + + +D K+M G P+++TY I++ L K ++ +A+ V+E ++
Sbjct: 437 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR 496
Query: 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN 424
PD Y+ +I + KAG+V+D E+F ++ +GV PNV+ YNTMIS C + +E
Sbjct: 497 STMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEE 556
Query: 425 ALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484
A LL+KM+ED P+ TY L++ R + L+ M + DA T LV
Sbjct: 557 ADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVT 615
Query: 485 GLIESGKLELACSFFEEMIS 504
++ G+L+ + F +M+S
Sbjct: 616 NMLHDGRLDKS---FLDMLS 632
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 167/373 (44%), Gaps = 22/373 (5%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
+N ++ + K KF L+ L ++M L + L T S + R + A+ M
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISH-DLYTYSIFINCFCRRSQLSLALAVLAKM 144
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI-----------FNIL 272
K G E D LS L+ N H+ ++ D + L Q+ F L
Sbjct: 145 MKLGYEPDIVTLSSLL------NGYCHSKRI----SDAVALVDQMVEMGYKPDTFTFTTL 194
Query: 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332
IHG K +A + +M Q+G PD+V+Y + C+ D LK+M++
Sbjct: 195 IHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKI 254
Query: 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392
+ V+ Y ++ L K K +++AL ++ +M + PD YSSLI L GR DA+
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314
Query: 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452
+ DM ++ + PNV+T++ +I + + A KL +M + PD TY+ L+ C
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 374
Query: 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512
R+ + M D + TY++L++G ++ ++E F EM +G+V
Sbjct: 375 MHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 434
Query: 513 TYKMLEEKLEKKR 525
TY L + R
Sbjct: 435 TYTTLIHGFFQAR 447
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 174/371 (46%), Gaps = 6/371 (1%)
Query: 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYD 214
G H Y+ ++ + + L ++ +M +L GY + T+S+++ R
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKL--GYEPDIVTLSSLLNGYCHSKRIS 170
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF--KDCIPLSSQIFNIL 272
DAV M + G + DT + L+ L N A + + + C P + +
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQP-DLVTYGTV 229
Query: 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332
++G CK +D A +K+M + DVV Y I+ C+ K + EM KG
Sbjct: 230 VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGI 289
Query: 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392
+P V TY+ ++ L + ++A ++ M P+ +S+LI K G++ +A +
Sbjct: 290 RPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 349
Query: 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452
++++M K+ + P++ TY+++I+ C + A + + M C P+ TY+ L+K C
Sbjct: 350 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFC 409
Query: 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512
+ KR++ L M + + + TY +L+ G ++ + A F++M+S G+ P
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469
Query: 513 TYKMLEEKLEK 523
TY +L + L K
Sbjct: 470 TYNILLDGLCK 480
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 155/328 (47%), Gaps = 6/328 (1%)
Query: 196 SLATMSTIMRRLVRGG-----RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEH 250
S A+ S R ++R + DDAV+ F M K + L+ + K N E
Sbjct: 42 SFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFEL 101
Query: 251 AYKVFLEFKDC-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309
+ + + I ++I I+ +C+ ++ A + +M + G+ PD+V+ + +
Sbjct: 102 VISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLN 161
Query: 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
YC K + +M E G KP T+T ++H L + +EA+ + ++M C P
Sbjct: 162 GYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQP 221
Query: 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429
D Y +++ L K G + A + + M+K + +V+ YNT+I C ++AL L
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLF 281
Query: 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES 489
+M+ +PD TY+ L+ C R + LL+ M + ++ + T+++L+ ++
Sbjct: 282 TEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 341
Query: 490 GKLELACSFFEEMISKGIVPYHSTYKML 517
GKL A ++EMI + I P TY L
Sbjct: 342 GKLVEAEKLYDEMIKRSIDPDIFTYSSL 369
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 146/301 (48%), Gaps = 2/301 (0%)
Query: 248 VEHAYKVFLEFKDCIPLSSQI-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306
V+ A +F + P S + FN L+ K K + ++M G S D+ +Y+
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366
FI +CR L +M + G +P ++T + +++ +K+I++A+ + ++M
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 367 CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426
PDT +++LI L + +A + + M ++G P+++TY T+++ C R + + AL
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 427 KLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486
LL+KME+ + D Y ++ C+ K M L T M + D TY+SL+ L
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303
Query: 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK-RLGNAKERINKLLAHAKEQKT 545
G+ A +MI + I P T+ L + K+ +L A++ ++++ + +
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363
Query: 546 F 546
F
Sbjct: 364 F 364
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 14/229 (6%)
Query: 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355
G P V S+ C E+ F +E I+ + L ++++A
Sbjct: 22 GNPPTVPSFFNLCGSGCWERSFASASGDYRE--------------ILRNRLSDIIKVDDA 67
Query: 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISS 415
+ ++ M P ++ L+ ++K + + + E M+ G+ ++ TY+ I+
Sbjct: 68 VDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINC 127
Query: 416 ACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD 475
C RS+ AL +L KM + +PD T + LL C KR+ L+ M + D
Sbjct: 128 FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 187
Query: 476 AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
T+ +L+ GL K A + ++M+ +G P TY + L K+
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 170/333 (51%), Gaps = 3/333 (0%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
+L T ++ L + G D A+ M+ +E D + ++D+L K V+ A +F
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283
Query: 256 --LEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
+E K P + ++ LI C + DA + + +M ++ +P++V++ I+ + +
Sbjct: 284 KEMETKGIRP-NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Query: 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373
E F + + +M ++ P + TY +++ ++++A +++E M S DC PD
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 402
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
Y++LI K+ RV+D E+F +M +G+V + +TY T+I + +NA K+ ++M
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 434 EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLE 493
D PD TY+ LL C +++ + +M K+++ +D Y +++ G+ ++GK++
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Query: 494 LACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526
F + KG+ P TY + L KRL
Sbjct: 523 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 555
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 164/312 (52%), Gaps = 9/312 (2%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255
+L T + ++ V+ G++ +A + + M K ++ D + L++ + ++ A ++F
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF 388
Query: 256 LEF---KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312
EF KDC P +N LI G+CK+++V+D + +EM +G D V+YT I+
Sbjct: 389 -EFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTS 372
+ D K+M G P ++TY+I++ L ++ +AL+V++ M+ + D
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506
Query: 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432
Y+++I + KAG+V D ++F + +GV PNV+TYNTMIS C++ + A LL+KM
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492
+ED P+ TY L++ R L+ M DA T LV ++ G+L
Sbjct: 567 KEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRL 625
Query: 493 ELACSFFEEMIS 504
+ + F +M+S
Sbjct: 626 DKS---FLDMLS 634
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 170/365 (46%), Gaps = 2/365 (0%)
Query: 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRG 222
++NT++D L K + L KEM E ++ T S+++ L GR+ DA +
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE-FKDCIPLSSQIFNILIHGWCKTRK 281
M + + + + L+D VK A K++ + K I +N L++G+C +
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR 380
Query: 282 VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI 341
+D A++ + M + PDVV+Y I+ +C+ K + +EM +G +TYT
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 440
Query: 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG 401
++ L + A KV+++M SD PD YS L+ L G+++ A E+F+ M+K
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500
Query: 402 VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLN 461
+ ++ Y TMI C + ++ L + KP+ TY ++ C K+ ++
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560
Query: 462 FLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
LL M ++ ++GTY +L+R + G + EM S V ST ++ L
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 620
Query: 522 EKKRL 526
RL
Sbjct: 621 HDGRL 625
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 165/359 (45%), Gaps = 2/359 (0%)
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
+N ++ + K KKF ++ L ++M L + L T + ++ R + A+ M
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVH-GLYTYNILINCFCRRSQISLALALLGKM 146
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI-FNILIHGWCKTRKV 282
K G E LS L++ G + A + + + I F LIHG K
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV 342
+A + M Q+G P++V+Y + C+ D + L +M+ + V+ + +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402
+ +L K + +++AL ++++M++ P+ YSSLI L GR DA+++ DM ++ +
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNF 462
PN++T+N +I + + A KL M + PD TY L+ C R+
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521
+ M D D TY +L++G +S ++E F EM +G+V TY L + L
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 122/263 (46%), Gaps = 1/263 (0%)
Query: 263 PLSSQI-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321
PL S + FN L+ K +K D ++M + + +Y I +CR
Sbjct: 81 PLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLAL 140
Query: 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381
L +M + G +PS++T + +++ K+I++A+ + ++M PDT +++LI L
Sbjct: 141 ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 200
Query: 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441
+ +A + + M ++G PN++TY +++ C R + + AL LL KME + D
Sbjct: 201 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADV 260
Query: 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEE 501
+ ++ C+ + + L M + + TY+SL+ L G+ A +
Sbjct: 261 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320
Query: 502 MISKGIVPYHSTYKMLEEKLEKK 524
MI K I P T+ L + K+
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKE 343
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%)
Query: 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYT 340
K+DDA M + P +V + + + K F V ++MQ + TY
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400
I+++ + QI+ AL + KM P SSL+ R+ DA + + M +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVL 460
G P+ +T+ T+I ++ A+ L+ +M + C+P+ TY ++ C++ +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
LL M + D + +++ L + ++ A + F+EM +KGI P TY L
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%)
Query: 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
++++A+ ++ M LP ++ L+ ++K + + E M++ +V + TYN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470
+I+ C RS+ AL LL KM + +P T + LL C KR+ L+ M +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
D T+ +L+ GL K A + + M+ +G P TY ++ L K+
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 183/422 (43%), Gaps = 49/422 (11%)
Query: 130 VEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEM-- 187
V + L D AF FF W+ T+ G+ H+ E Y + +L ++ + ++KEM
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170
Query: 188 --------DEL----NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235
D L N + L+ G ++A++ F MK++ V TR+
Sbjct: 171 SKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSC 230
Query: 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295
N L+H + K K DD ++ K+M
Sbjct: 231 ----------------------------------NGLLHRFAKLGKTDDVKRFFKDMIGA 256
Query: 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355
G P V +Y I+ C+E D +EM+ +G P +TY ++ GK ++++
Sbjct: 257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 316
Query: 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISS 415
+ +E+MK C PD Y++LI K G++ E + +MK G+ PNV++Y+T++ +
Sbjct: 317 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Query: 416 ACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD 475
C + A+K M P+ TY L+ C+ + L M + V +
Sbjct: 377 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 436
Query: 476 AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEK-KRLGNAKERIN 534
TY +L+ GL ++ +++ A F +M + G++P ++Y L K K + A E +N
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 496
Query: 535 KL 536
+L
Sbjct: 497 EL 498
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 191/400 (47%), Gaps = 12/400 (3%)
Query: 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLA 198
D+ A G F K + G + YN+M+D GK + +EM ++ +
Sbjct: 276 GDVEAARGLFEEMKFR-GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC-CEPDVI 333
Query: 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF 258
T + ++ + G+ +E +R MK G++ + + S L+D K ++ A K +++
Sbjct: 334 TYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 393
Query: 259 K--DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316
+ +P + + LI CK + DA + EM Q G +VV+YT I+ C +
Sbjct: 394 RRVGLVP-NEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER 452
Query: 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
++ ++ +M G P++ +Y ++H KAK ++ AL++ ++K PD Y +
Sbjct: 453 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 512
Query: 377 LIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436
I+ L +++ A + +MK+ G+ N L Y T++ + L LL +M+E
Sbjct: 513 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELD 572
Query: 437 CKPDCETYAPLLKMCCRKKRM-KVLNFLLTHMFKNDVSM--DAGTYASLVRGLIESGKLE 493
+ T+ L+ C+ K + K +++ + ND + +A + +++ GL + ++E
Sbjct: 573 IEVTVVTFCVLIDGLCKNKLVSKAVDYF--NRISNDFGLQANAAIFTAMIDGLCKDNQVE 630
Query: 494 LACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERI 533
A + FE+M+ KG+VP + Y L + K+ GN E +
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQ--GNVLEAL 668
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 161/352 (45%), Gaps = 11/352 (3%)
Query: 164 YNTMVDVLGKSKKFCLMWELVK-EMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFR 221
Y+T+VD K +M + +K +D G V + T ++++ + G DA
Sbjct: 370 YSTLVDAFCKEG---MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGN 426
Query: 222 GMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEFKDCIP-LSSQIFNILIHGWCK 278
M + GVE + + L+D L ++ A ++F ++ IP L+S +N LIHG+ K
Sbjct: 427 EMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS--YNALIHGFVK 484
Query: 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT 338
+ +D A + + E+ +G PD++ Y FI C + + EM+E G K + +
Sbjct: 485 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 544
Query: 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398
YT +M A K+ E L + ++MK D + LI L K V A + F +
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS 604
Query: 399 KQ-GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRM 457
G+ N + MI C ++ E A L ++M + PD Y L+ ++ +
Sbjct: 605 NDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNV 664
Query: 458 KVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVP 509
L M + + +D Y SLV GL +L+ A SF EEMI +GI P
Sbjct: 665 LEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHP 716
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 143/320 (44%), Gaps = 9/320 (2%)
Query: 154 QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGR 212
Q G Y ++D L +++ EL +MD G + +LA+ + ++ V+
Sbjct: 430 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMD--TAGVIPNLASYNALIHGFVKAKN 487
Query: 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC-IPLSSQIFNI 271
D A+E +K G++ D + L +E A V E K+C I +S I+
Sbjct: 488 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 547
Query: 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM-QEK 330
L+ + K+ + + EM + VV++ I+ C+ K K D + +
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607
Query: 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390
G + + +T ++ L K Q+ A ++E+M +PD + Y+SL+ K G V +A
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667
Query: 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLK- 449
+ + M + G+ ++L Y +++ ++ + A L++M + PD +LK
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKK 727
Query: 450 ---MCCRKKRMKVLNFLLTH 466
+ C + +++ ++L+ H
Sbjct: 728 HYELGCIDEAVELQSYLMKH 747
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,370,149
Number of Sequences: 539616
Number of extensions: 7999700
Number of successful extensions: 33110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 25214
Number of HSP's gapped (non-prelim): 2845
length of query: 546
length of database: 191,569,459
effective HSP length: 122
effective length of query: 424
effective length of database: 125,736,307
effective search space: 53312194168
effective search space used: 53312194168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)