Query 009011
Match_columns 546
No_of_seqs 740 out of 3185
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 19:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-60 5.5E-65 503.5 59.4 414 125-540 435-876 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.2E-59 1.3E-63 492.9 57.4 423 109-539 387-815 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 6.5E-59 1.4E-63 501.8 42.8 477 17-538 107-616 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1E-57 2.2E-62 481.2 48.8 416 110-542 105-525 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5.5E-58 1.2E-62 494.7 44.5 477 17-542 208-688 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1E-54 2.3E-59 458.4 49.3 415 111-543 142-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-23 2.7E-28 231.8 54.4 385 140-538 514-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-22 2.9E-27 223.7 55.5 389 140-542 480-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.6E-25 187.0 37.3 305 169-511 43-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.5E-25 187.1 37.1 312 122-442 32-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 2E-18 4.3E-23 179.7 45.3 330 167-505 48-381 (656)
12 PRK11447 cellulose synthase su 99.9 2.6E-17 5.7E-22 183.0 50.9 387 139-538 283-738 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 5.5E-17 1.2E-21 169.5 49.8 256 280-541 308-572 (615)
14 PRK15174 Vi polysaccharide exp 99.9 1.5E-17 3.2E-22 173.2 43.1 334 200-542 45-383 (656)
15 PRK11447 cellulose synthase su 99.8 2.6E-16 5.7E-21 175.1 51.8 367 166-540 274-700 (1157)
16 KOG4626 O-linked N-acetylgluco 99.8 4.4E-18 9.5E-23 161.7 31.3 338 159-510 114-488 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-16 6.4E-21 164.0 47.2 358 139-506 141-572 (615)
18 PRK10049 pgaA outer membrane p 99.8 4.9E-16 1.1E-20 165.3 49.5 408 123-543 11-459 (765)
19 KOG4626 O-linked N-acetylgluco 99.8 1.3E-16 2.9E-21 151.8 34.3 351 122-486 142-500 (966)
20 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.9E-19 132.5 41.8 412 107-540 130-590 (625)
21 PRK14574 hmsH outer membrane p 99.8 3.6E-14 7.7E-19 148.5 51.1 393 139-541 82-514 (822)
22 PRK10049 pgaA outer membrane p 99.8 2.2E-15 4.8E-20 160.4 42.4 378 156-543 10-425 (765)
23 PRK14574 hmsH outer membrane p 99.7 4E-13 8.7E-18 140.7 47.9 403 129-542 38-481 (822)
24 KOG4422 Uncharacterized conser 99.7 3.5E-13 7.5E-18 123.4 37.0 372 163-542 118-553 (625)
25 PRK09782 bacteriophage N4 rece 99.7 8.5E-12 1.8E-16 133.6 52.1 350 175-538 356-738 (987)
26 PRK09782 bacteriophage N4 rece 99.7 7.9E-12 1.7E-16 133.8 51.5 219 315-542 490-708 (987)
27 KOG2076 RNA polymerase III tra 99.7 3E-12 6.4E-17 128.0 40.8 365 170-539 148-554 (895)
28 PRK10747 putative protoheme IX 99.7 1.5E-12 3.3E-17 128.0 37.4 282 174-468 97-388 (398)
29 PRK10747 putative protoheme IX 99.6 3.2E-12 7E-17 125.7 35.6 283 210-503 97-388 (398)
30 TIGR00540 hemY_coli hemY prote 99.6 5.2E-12 1.1E-16 124.9 37.2 289 174-502 97-396 (409)
31 TIGR00540 hemY_coli hemY prote 99.6 2.2E-12 4.8E-17 127.6 34.3 291 243-537 95-396 (409)
32 KOG2002 TPR-containing nuclear 99.6 2.5E-11 5.4E-16 122.4 40.6 399 139-543 284-748 (1018)
33 COG3071 HemY Uncharacterized e 99.6 9.8E-11 2.1E-15 107.1 36.9 329 130-503 58-388 (400)
34 PF13429 TPR_15: Tetratricopep 99.6 1.4E-14 3.1E-19 136.1 12.4 215 245-465 57-272 (280)
35 PF13429 TPR_15: Tetratricopep 99.6 2.3E-14 5.1E-19 134.6 12.7 259 238-503 14-275 (280)
36 KOG2002 TPR-containing nuclear 99.6 1E-10 2.2E-15 118.0 37.9 387 143-539 254-708 (1018)
37 COG2956 Predicted N-acetylgluc 99.6 1.9E-11 4.1E-16 108.4 28.8 288 211-505 49-347 (389)
38 COG2956 Predicted N-acetylgluc 99.6 4.1E-11 8.8E-16 106.3 30.8 289 174-469 48-346 (389)
39 KOG0495 HAT repeat protein [RN 99.5 2.3E-09 5E-14 103.8 44.5 410 115-541 467-881 (913)
40 KOG2003 TPR repeat-containing 99.5 6.9E-11 1.5E-15 109.3 32.7 150 373-527 560-710 (840)
41 KOG1126 DNA-binding cell divis 99.5 4.5E-12 9.6E-17 123.0 26.1 283 212-505 334-620 (638)
42 KOG1155 Anaphase-promoting com 99.5 2.7E-10 5.8E-15 105.9 36.5 332 155-504 158-494 (559)
43 KOG2076 RNA polymerase III tra 99.5 1.6E-10 3.4E-15 115.9 36.7 327 207-538 149-510 (895)
44 KOG1126 DNA-binding cell divis 99.5 4E-12 8.7E-17 123.3 24.3 285 246-544 333-624 (638)
45 COG3071 HemY Uncharacterized e 99.5 4.3E-10 9.4E-15 103.0 34.0 285 245-538 97-388 (400)
46 KOG2003 TPR repeat-containing 99.4 1.2E-09 2.5E-14 101.3 32.7 259 275-540 428-689 (840)
47 KOG1915 Cell cycle control pro 99.4 2.4E-08 5.2E-13 93.4 41.1 356 174-540 154-536 (677)
48 KOG4318 Bicoid mRNA stability 99.4 1.8E-11 3.9E-16 122.0 21.1 250 219-492 12-287 (1088)
49 KOG0495 HAT repeat protein [RN 99.4 2.6E-07 5.7E-12 90.0 47.1 387 144-541 425-847 (913)
50 KOG1915 Cell cycle control pro 99.4 6.4E-08 1.4E-12 90.6 41.2 353 141-506 157-537 (677)
51 PRK12370 invasion protein regu 99.4 9.7E-10 2.1E-14 113.1 32.5 269 193-471 252-536 (553)
52 KOG4318 Bicoid mRNA stability 99.4 1.6E-10 3.5E-15 115.3 24.5 248 153-421 17-286 (1088)
53 KOG1155 Anaphase-promoting com 99.4 2.7E-09 5.9E-14 99.4 29.7 312 167-489 233-553 (559)
54 TIGR02521 type_IV_pilW type IV 99.4 9.3E-10 2E-14 100.4 27.0 25 199-223 33-57 (234)
55 TIGR02521 type_IV_pilW type IV 99.4 7.8E-10 1.7E-14 100.9 26.5 199 160-363 30-230 (234)
56 PRK12370 invasion protein regu 99.4 8.8E-10 1.9E-14 113.4 28.8 251 246-506 275-536 (553)
57 KOG0547 Translocase of outer m 99.4 7.9E-09 1.7E-13 97.0 31.8 364 163-538 117-564 (606)
58 PF12569 NARP1: NMDA receptor- 99.3 1.1E-08 2.5E-13 101.7 34.6 294 167-469 10-333 (517)
59 PF12569 NARP1: NMDA receptor- 99.3 8.5E-09 1.8E-13 102.6 33.0 282 139-432 18-331 (517)
60 KOG1129 TPR repeat-containing 99.3 2.3E-10 4.9E-15 101.7 18.7 232 269-506 226-459 (478)
61 PF13041 PPR_2: PPR repeat fam 99.3 8.4E-12 1.8E-16 82.4 6.6 49 299-347 1-49 (50)
62 KOG0547 Translocase of outer m 99.3 3.1E-08 6.8E-13 93.1 32.1 353 139-504 129-565 (606)
63 KOG1173 Anaphase-promoting com 99.3 4.6E-08 9.9E-13 93.7 32.5 285 229-522 241-533 (611)
64 KOG1156 N-terminal acetyltrans 99.3 3.3E-07 7.1E-12 89.4 38.5 394 130-541 11-469 (700)
65 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 3.8E-16 80.9 6.6 49 404-452 1-49 (50)
66 KOG1129 TPR repeat-containing 99.2 2.9E-09 6.2E-14 94.8 21.1 235 196-435 222-458 (478)
67 KOG1174 Anaphase-promoting com 99.2 1.3E-07 2.8E-12 87.1 32.2 304 125-436 195-501 (564)
68 KOG1173 Anaphase-promoting com 99.2 3.6E-08 7.8E-13 94.4 27.9 284 193-486 240-532 (611)
69 KOG1840 Kinesin light chain [C 99.2 2.2E-08 4.7E-13 98.6 26.8 241 303-543 201-482 (508)
70 KOG1174 Anaphase-promoting com 99.1 1E-06 2.2E-11 81.4 33.7 279 252-539 218-499 (564)
71 KOG1840 Kinesin light chain [C 99.1 3.6E-08 7.9E-13 97.0 26.3 241 193-433 195-477 (508)
72 KOG2047 mRNA splicing factor [ 99.1 9.3E-06 2E-10 79.4 41.5 365 163-538 140-613 (835)
73 KOG2047 mRNA splicing factor [ 99.1 2.9E-06 6.3E-11 82.8 37.4 404 125-535 208-718 (835)
74 COG3063 PilF Tfp pilus assembl 99.1 1.1E-07 2.3E-12 81.2 24.3 197 339-539 38-235 (250)
75 KOG2376 Signal recognition par 99.1 2.8E-06 6.1E-11 82.2 36.7 146 387-536 357-516 (652)
76 cd05804 StaR_like StaR_like; a 99.1 1.5E-06 3.3E-11 85.0 36.1 200 163-364 8-214 (355)
77 cd05804 StaR_like StaR_like; a 99.1 9.4E-07 2E-11 86.4 34.6 308 194-505 3-336 (355)
78 KOG4162 Predicted calmodulin-b 99.1 4.8E-06 1E-10 83.1 38.1 380 156-542 318-785 (799)
79 PRK11189 lipoprotein NlpI; Pro 99.1 2.3E-07 5.1E-12 87.4 27.2 195 234-436 66-266 (296)
80 PRK11189 lipoprotein NlpI; Pro 99.1 3E-07 6.5E-12 86.7 27.8 232 171-411 36-275 (296)
81 KOG4340 Uncharacterized conser 99.1 1.9E-07 4.1E-12 82.4 23.9 326 162-503 11-373 (459)
82 COG3063 PilF Tfp pilus assembl 99.1 3.2E-07 7E-12 78.3 24.4 197 164-365 38-236 (250)
83 KOG1156 N-terminal acetyltrans 99.1 2.1E-05 4.6E-10 77.1 39.8 365 139-520 55-481 (700)
84 PRK04841 transcriptional regul 99.0 3.6E-06 7.8E-11 93.3 38.7 338 205-542 382-762 (903)
85 KOG3785 Uncharacterized conser 99.0 3.7E-06 8E-11 76.3 30.2 382 139-542 36-492 (557)
86 KOG4340 Uncharacterized conser 99.0 2.2E-06 4.7E-11 75.9 27.3 398 121-539 4-442 (459)
87 KOG4162 Predicted calmodulin-b 99.0 3.2E-05 6.9E-10 77.5 37.4 381 120-505 316-783 (799)
88 PF04733 Coatomer_E: Coatomer 98.9 9.4E-08 2E-12 88.8 18.0 252 204-470 8-265 (290)
89 KOG0548 Molecular co-chaperone 98.9 2.5E-05 5.3E-10 75.1 32.5 365 139-519 16-467 (539)
90 KOG0985 Vesicle coat protein c 98.9 0.00012 2.6E-09 75.5 38.3 296 159-502 982-1305(1666)
91 KOG3785 Uncharacterized conser 98.8 2.6E-05 5.6E-10 70.9 29.4 292 210-514 164-497 (557)
92 PF04733 Coatomer_E: Coatomer 98.8 2E-07 4.2E-12 86.7 16.5 248 242-505 11-265 (290)
93 PRK04841 transcriptional regul 98.8 3.2E-05 7E-10 85.7 36.9 335 171-506 384-761 (903)
94 KOG0624 dsRNA-activated protei 98.8 7.6E-05 1.6E-09 67.7 31.5 317 160-505 37-370 (504)
95 KOG0985 Vesicle coat protein c 98.8 9.5E-05 2.1E-09 76.1 34.7 330 159-535 950-1303(1666)
96 KOG3617 WD40 and TPR repeat-co 98.8 6.8E-06 1.5E-10 82.4 25.6 331 159-540 724-1109(1416)
97 KOG1070 rRNA processing protei 98.8 1.1E-05 2.4E-10 85.5 28.0 235 300-540 1457-1700(1710)
98 KOG2376 Signal recognition par 98.8 0.00022 4.9E-09 69.5 34.6 362 166-542 17-489 (652)
99 PLN02789 farnesyltranstransfer 98.7 1.5E-05 3.2E-10 75.2 26.6 141 163-307 39-182 (320)
100 PLN02789 farnesyltranstransfer 98.7 2.2E-05 4.7E-10 74.1 27.0 220 209-433 49-300 (320)
101 KOG0548 Molecular co-chaperone 98.7 3.3E-05 7.2E-10 74.3 28.0 364 168-541 9-456 (539)
102 KOG1070 rRNA processing protei 98.7 1.6E-05 3.5E-10 84.3 27.8 234 229-467 1455-1697(1710)
103 KOG0624 dsRNA-activated protei 98.7 0.00015 3.1E-09 66.0 29.6 296 238-541 44-371 (504)
104 KOG3616 Selective LIM binding 98.7 2E-05 4.3E-10 78.2 25.7 325 156-535 584-932 (1636)
105 KOG1914 mRNA cleavage and poly 98.7 0.0005 1.1E-08 66.4 36.2 375 157-539 16-500 (656)
106 KOG1125 TPR repeat-containing 98.6 8.8E-06 1.9E-10 78.8 21.7 251 242-498 295-564 (579)
107 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.6E-13 57.9 3.9 32 296-327 2-33 (34)
108 KOG1125 TPR repeat-containing 98.6 9.4E-06 2E-10 78.6 21.6 256 273-534 292-565 (579)
109 PF12854 PPR_1: PPR repeat 98.6 6.3E-08 1.4E-12 57.3 4.0 32 471-502 2-33 (34)
110 KOG1128 Uncharacterized conser 98.6 8.9E-05 1.9E-09 74.0 27.6 214 236-469 402-615 (777)
111 COG5010 TadD Flp pilus assembl 98.6 1.7E-05 3.7E-10 69.5 19.7 159 201-362 70-228 (257)
112 PRK14720 transcript cleavage f 98.6 3.4E-05 7.3E-10 81.2 25.1 240 193-487 27-268 (906)
113 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.4E-10 70.6 18.0 128 196-325 99-226 (257)
114 KOG3081 Vesicle coat complex C 98.5 0.00011 2.4E-09 64.4 23.9 246 244-505 20-271 (299)
115 PRK15179 Vi polysaccharide bio 98.5 2.6E-05 5.6E-10 81.2 23.8 149 155-307 80-228 (694)
116 TIGR03302 OM_YfiO outer membra 98.5 1.5E-05 3.3E-10 72.7 20.1 190 158-365 30-232 (235)
117 KOG3081 Vesicle coat complex C 98.5 0.00013 2.8E-09 64.1 23.9 251 204-470 15-271 (299)
118 TIGR03302 OM_YfiO outer membra 98.5 2E-05 4.4E-10 72.0 20.4 187 194-400 30-232 (235)
119 KOG1128 Uncharacterized conser 98.5 1.7E-05 3.6E-10 79.0 20.4 222 262-505 394-616 (777)
120 KOG3616 Selective LIM binding 98.5 4.2E-05 9.1E-10 76.0 22.8 294 201-538 593-909 (1636)
121 PRK10370 formate-dependent nit 98.5 1.9E-05 4.1E-10 69.4 17.9 119 210-330 52-173 (198)
122 PRK10370 formate-dependent nit 98.4 4.4E-05 9.5E-10 67.0 19.3 154 204-372 23-179 (198)
123 KOG3617 WD40 and TPR repeat-co 98.4 0.00087 1.9E-08 67.9 29.6 201 269-502 941-1171(1416)
124 PRK15179 Vi polysaccharide bio 98.4 0.00016 3.4E-09 75.5 25.6 183 193-384 82-268 (694)
125 KOG1127 TPR repeat-containing 98.4 0.0012 2.5E-08 68.6 29.9 183 140-329 473-658 (1238)
126 COG4783 Putative Zn-dependent 98.4 0.00043 9.4E-09 66.2 25.1 123 270-396 310-433 (484)
127 PRK14720 transcript cleavage f 98.4 0.00015 3.3E-09 76.4 24.4 240 230-522 29-268 (906)
128 PRK15359 type III secretion sy 98.3 6.1E-05 1.3E-09 62.5 16.7 95 200-295 27-121 (144)
129 PRK15359 type III secretion sy 98.3 3.6E-05 7.8E-10 63.8 14.2 109 164-275 27-135 (144)
130 KOG3060 Uncharacterized conser 98.3 0.0011 2.3E-08 58.0 23.1 186 211-399 26-219 (289)
131 KOG3060 Uncharacterized conser 98.2 0.0014 3.1E-08 57.3 22.7 170 157-330 47-220 (289)
132 COG4783 Putative Zn-dependent 98.2 0.0013 2.8E-08 63.1 23.8 257 133-416 211-472 (484)
133 KOG2053 Mitochondrial inherita 98.2 0.013 2.9E-07 60.4 33.5 224 173-401 21-256 (932)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.9E-05 1.5E-09 72.2 15.3 126 163-294 171-296 (395)
135 TIGR02552 LcrH_SycD type III s 98.2 0.00012 2.5E-09 60.3 14.8 99 196-295 16-114 (135)
136 TIGR02552 LcrH_SycD type III s 98.1 0.00014 3.1E-09 59.7 14.7 96 234-330 19-114 (135)
137 KOG1127 TPR repeat-containing 98.1 0.0077 1.7E-07 62.8 28.8 150 141-294 508-658 (1238)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00017 3.8E-09 69.5 15.8 129 196-329 168-296 (395)
139 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.3E-10 48.5 4.5 33 478-510 2-34 (35)
140 TIGR00756 PPR pentatricopeptid 98.0 8.6E-06 1.9E-10 48.8 4.1 33 303-335 2-34 (35)
141 KOG2053 Mitochondrial inherita 98.0 0.028 6E-07 58.2 42.0 101 173-277 55-155 (932)
142 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 47.7 4.1 33 477-509 2-34 (34)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00081 1.8E-08 55.9 16.3 125 163-291 14-143 (145)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00073 1.6E-08 56.2 16.0 114 245-360 24-142 (145)
145 PF10037 MRP-S27: Mitochondria 97.9 0.00021 4.5E-09 69.3 13.6 124 296-419 61-186 (429)
146 PF13812 PPR_3: Pentatricopept 97.9 2.5E-05 5.5E-10 46.4 4.4 31 303-333 3-33 (34)
147 PF10037 MRP-S27: Mitochondria 97.9 0.00027 5.9E-09 68.5 13.7 118 404-521 64-183 (429)
148 PF04840 Vps16_C: Vps16, C-ter 97.9 0.028 6E-07 53.2 30.9 309 163-535 2-315 (319)
149 PF08579 RPM2: Mitochondrial r 97.8 0.00032 7E-09 53.2 10.3 75 450-524 34-117 (120)
150 cd00189 TPR Tetratricopeptide 97.8 0.00052 1.1E-08 51.8 11.2 90 203-293 6-95 (100)
151 PF08579 RPM2: Mitochondrial r 97.7 0.00059 1.3E-08 51.8 10.3 74 378-451 32-114 (120)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0013 2.7E-08 52.5 13.4 104 163-266 4-110 (119)
153 KOG1914 mRNA cleavage and poly 97.7 0.056 1.2E-06 52.9 38.0 176 352-529 347-528 (656)
154 PF05843 Suf: Suppressor of fo 97.7 0.00086 1.9E-08 62.6 13.5 129 163-294 3-135 (280)
155 PRK10866 outer membrane biogen 97.7 0.02 4.4E-07 52.0 21.9 59 166-226 37-98 (243)
156 PF01535 PPR: PPR repeat; Int 97.7 5.2E-05 1.1E-09 43.9 3.2 26 304-329 3-28 (31)
157 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0023 5E-08 51.0 13.6 98 199-296 4-106 (119)
158 PF01535 PPR: PPR repeat; Int 97.6 7.5E-05 1.6E-09 43.2 3.5 30 478-507 2-31 (31)
159 cd00189 TPR Tetratricopeptide 97.6 0.0011 2.4E-08 50.0 11.1 95 163-260 2-96 (100)
160 PF06239 ECSIT: Evolutionarily 97.6 0.0022 4.9E-08 55.1 13.4 102 404-524 45-151 (228)
161 PRK02603 photosystem I assembl 97.6 0.0052 1.1E-07 52.8 16.1 91 196-286 34-126 (172)
162 PF06239 ECSIT: Evolutionarily 97.6 0.001 2.2E-08 57.2 10.9 86 264-349 45-151 (228)
163 PF05843 Suf: Suppressor of fo 97.6 0.0014 3.1E-08 61.1 12.9 130 199-330 3-136 (280)
164 KOG0550 Molecular chaperone (D 97.5 0.027 5.8E-07 53.1 20.1 273 167-470 55-350 (486)
165 CHL00033 ycf3 photosystem I as 97.5 0.003 6.5E-08 54.1 12.9 81 197-277 35-117 (168)
166 PLN03088 SGT1, suppressor of 97.5 0.0047 1E-07 59.9 15.4 89 380-470 11-99 (356)
167 PRK10866 outer membrane biogen 97.4 0.048 1E-06 49.6 20.8 53 378-430 182-236 (243)
168 KOG0553 TPR repeat-containing 97.4 0.0024 5.3E-08 57.5 11.6 98 380-481 90-187 (304)
169 PF12688 TPR_5: Tetratrico pep 97.4 0.0097 2.1E-07 47.0 13.8 106 203-312 7-117 (120)
170 PLN03088 SGT1, suppressor of 97.4 0.0062 1.4E-07 59.0 15.4 90 205-295 10-99 (356)
171 PRK15363 pathogenicity island 97.4 0.0047 1E-07 50.7 12.2 92 202-294 40-131 (157)
172 PF12895 Apc3: Anaphase-promot 97.4 0.00038 8.3E-09 51.6 5.2 17 273-289 65-81 (84)
173 PRK15363 pathogenicity island 97.3 0.0068 1.5E-07 49.8 12.4 90 239-329 42-131 (157)
174 KOG2280 Vacuolar assembly/sort 97.3 0.22 4.7E-06 50.9 25.0 111 373-502 686-796 (829)
175 PF12895 Apc3: Anaphase-promot 97.3 0.00053 1.2E-08 50.8 5.4 18 483-500 65-82 (84)
176 CHL00033 ycf3 photosystem I as 97.3 0.0075 1.6E-07 51.6 13.0 64 372-435 36-101 (168)
177 PRK10153 DNA-binding transcrip 97.3 0.043 9.3E-07 55.8 20.0 146 368-519 334-494 (517)
178 PF14938 SNAP: Soluble NSF att 97.3 0.082 1.8E-06 49.6 20.8 61 339-399 158-224 (282)
179 PRK02603 photosystem I assembl 97.2 0.023 5E-07 48.8 15.7 84 304-388 38-123 (172)
180 PF07079 DUF1347: Protein of u 97.2 0.21 4.5E-06 48.0 34.0 114 422-538 396-522 (549)
181 PF14938 SNAP: Soluble NSF att 97.2 0.052 1.1E-06 50.9 19.1 206 163-398 37-264 (282)
182 KOG2796 Uncharacterized conser 97.2 0.16 3.4E-06 45.2 20.6 133 163-296 179-316 (366)
183 COG3898 Uncharacterized membra 97.2 0.22 4.9E-06 46.8 34.7 319 130-470 58-392 (531)
184 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.27 5.9E-06 47.2 33.5 130 407-540 398-531 (660)
185 KOG0553 TPR repeat-containing 97.1 0.024 5.2E-07 51.3 14.6 96 242-340 91-186 (304)
186 PF14559 TPR_19: Tetratricopep 97.1 0.0014 3.1E-08 46.1 5.8 51 245-295 4-54 (68)
187 PRK10153 DNA-binding transcrip 97.1 0.073 1.6E-06 54.2 19.5 66 405-472 419-484 (517)
188 COG4235 Cytochrome c biogenesi 97.0 0.047 1E-06 49.7 15.9 101 404-506 154-257 (287)
189 PF14559 TPR_19: Tetratricopep 97.0 0.0024 5.2E-08 45.0 6.4 52 173-226 3-54 (68)
190 KOG1130 Predicted G-alpha GTPa 97.0 0.012 2.5E-07 55.3 12.1 132 338-469 197-343 (639)
191 KOG0550 Molecular chaperone (D 97.0 0.35 7.6E-06 46.0 23.7 154 273-435 176-350 (486)
192 PF12688 TPR_5: Tetratrico pep 96.9 0.068 1.5E-06 42.3 14.2 18 345-362 47-64 (120)
193 PF13525 YfiO: Outer membrane 96.9 0.11 2.5E-06 45.8 17.1 60 166-225 10-70 (203)
194 KOG2041 WD40 repeat protein [G 96.9 0.65 1.4E-05 47.2 26.4 128 174-324 747-875 (1189)
195 PF13525 YfiO: Outer membrane 96.8 0.16 3.4E-06 44.9 17.6 64 202-265 10-75 (203)
196 PF13432 TPR_16: Tetratricopep 96.8 0.006 1.3E-07 42.5 6.8 54 241-294 6-59 (65)
197 KOG2796 Uncharacterized conser 96.8 0.36 7.9E-06 43.0 22.5 134 372-506 178-316 (366)
198 PF13432 TPR_16: Tetratricopep 96.8 0.0059 1.3E-07 42.5 6.4 56 168-225 4-59 (65)
199 PRK10803 tol-pal system protei 96.8 0.039 8.4E-07 50.7 13.3 105 162-266 144-251 (263)
200 COG4235 Cytochrome c biogenesi 96.7 0.088 1.9E-06 48.0 15.0 102 193-295 152-256 (287)
201 KOG1538 Uncharacterized conser 96.7 0.33 7.1E-06 48.7 19.7 56 370-434 746-801 (1081)
202 PF04840 Vps16_C: Vps16, C-ter 96.7 0.56 1.2E-05 44.5 27.9 277 200-533 3-284 (319)
203 COG4700 Uncharacterized protei 96.7 0.33 7E-06 40.9 18.4 130 229-362 86-219 (251)
204 KOG2041 WD40 repeat protein [G 96.6 1 2.2E-05 45.9 28.1 342 159-538 690-1084(1189)
205 PF13414 TPR_11: TPR repeat; P 96.6 0.009 2E-07 42.1 6.3 26 269-294 6-31 (69)
206 PF03704 BTAD: Bacterial trans 96.5 0.03 6.6E-07 46.5 10.1 72 443-515 64-140 (146)
207 PF12921 ATP13: Mitochondrial 96.5 0.066 1.4E-06 42.8 11.4 98 405-522 1-99 (126)
208 COG3898 Uncharacterized membra 96.5 0.81 1.7E-05 43.3 30.4 279 245-537 97-389 (531)
209 PF13414 TPR_11: TPR repeat; P 96.5 0.016 3.5E-07 40.8 7.1 26 409-434 6-31 (69)
210 COG4700 Uncharacterized protei 96.4 0.47 1E-05 40.0 18.7 126 264-393 87-215 (251)
211 PF13281 DUF4071: Domain of un 96.4 0.93 2E-05 43.6 20.1 31 195-225 139-169 (374)
212 PRK10803 tol-pal system protei 96.4 0.088 1.9E-06 48.4 13.0 6 99-104 44-49 (263)
213 KOG1538 Uncharacterized conser 96.4 0.42 9.2E-06 48.0 18.0 85 443-538 749-844 (1081)
214 PF13371 TPR_9: Tetratricopept 96.4 0.029 6.3E-07 40.0 8.0 57 449-506 3-59 (73)
215 PF13281 DUF4071: Domain of un 96.4 0.89 1.9E-05 43.7 19.8 187 318-506 120-335 (374)
216 PF04053 Coatomer_WDAD: Coatom 96.3 0.2 4.3E-06 49.8 15.7 129 164-325 298-426 (443)
217 PF03704 BTAD: Bacterial trans 96.2 0.026 5.7E-07 46.9 8.3 53 240-292 70-122 (146)
218 PF12921 ATP13: Mitochondrial 96.2 0.088 1.9E-06 42.1 10.7 48 403-450 49-97 (126)
219 KOG1130 Predicted G-alpha GTPa 96.1 0.12 2.7E-06 48.8 12.3 285 204-504 24-343 (639)
220 COG3118 Thioredoxin domain-con 96.0 1.2 2.7E-05 40.7 17.7 142 242-385 144-286 (304)
221 PF13170 DUF4003: Protein of u 96.0 1.4 3E-05 41.3 20.5 131 352-484 78-225 (297)
222 COG3118 Thioredoxin domain-con 96.0 0.56 1.2E-05 42.8 15.4 145 169-317 142-288 (304)
223 PF09205 DUF1955: Domain of un 95.9 0.63 1.4E-05 36.8 14.6 58 413-471 93-150 (161)
224 PF13371 TPR_9: Tetratricopept 95.9 0.038 8.2E-07 39.4 6.6 54 242-295 5-58 (73)
225 PF10300 DUF3808: Protein of u 95.9 0.7 1.5E-05 46.7 17.7 26 339-364 191-216 (468)
226 KOG3941 Intermediate in Toll s 95.8 0.076 1.6E-06 47.6 9.3 84 280-363 86-186 (406)
227 COG4105 ComL DNA uptake lipopr 95.8 1.3 2.9E-05 39.7 20.8 177 347-544 45-237 (254)
228 PF04053 Coatomer_WDAD: Coatom 95.7 0.39 8.5E-06 47.8 15.1 56 335-399 346-401 (443)
229 smart00299 CLH Clathrin heavy 95.7 0.89 1.9E-05 37.3 15.0 43 166-210 12-54 (140)
230 PF08631 SPO22: Meiosis protei 95.7 1.9 4.1E-05 40.3 25.7 18 172-189 4-21 (278)
231 PRK15331 chaperone protein Sic 95.6 1.1 2.3E-05 37.4 14.9 87 416-504 47-133 (165)
232 PF13424 TPR_12: Tetratricopep 95.6 0.045 9.8E-07 39.6 6.3 18 483-500 53-70 (78)
233 PF09205 DUF1955: Domain of un 95.5 0.92 2E-05 35.9 13.8 65 338-403 88-152 (161)
234 KOG2280 Vacuolar assembly/sort 95.5 3.5 7.7E-05 42.6 32.7 309 202-534 442-793 (829)
235 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.6 5.5E-05 40.9 22.3 147 301-452 397-546 (660)
236 KOG3941 Intermediate in Toll s 95.5 0.28 6.2E-06 44.1 11.6 51 403-453 64-119 (406)
237 PRK15331 chaperone protein Sic 95.5 0.51 1.1E-05 39.2 12.4 89 205-294 45-133 (165)
238 KOG1585 Protein required for f 95.5 0.44 9.6E-06 42.0 12.3 26 163-188 33-58 (308)
239 PF10300 DUF3808: Protein of u 95.4 1.1 2.5E-05 45.2 17.4 161 236-399 192-375 (468)
240 PF13424 TPR_12: Tetratricopep 95.4 0.07 1.5E-06 38.6 6.5 67 476-542 5-77 (78)
241 KOG0543 FKBP-type peptidyl-pro 95.3 0.34 7.3E-06 46.1 12.0 127 167-294 214-354 (397)
242 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.55 1.2E-05 45.8 13.5 67 229-295 72-141 (453)
243 KOG1585 Protein required for f 95.2 2.1 4.6E-05 37.9 16.8 84 304-397 34-117 (308)
244 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.37 8E-06 47.0 12.2 66 193-260 71-140 (453)
245 smart00299 CLH Clathrin heavy 95.2 1.5 3.2E-05 36.0 15.2 43 341-384 12-54 (140)
246 KOG4555 TPR repeat-containing 95.2 0.69 1.5E-05 36.5 11.3 90 241-331 52-145 (175)
247 KOG1920 IkappaB kinase complex 95.1 5.6 0.00012 43.5 21.3 78 413-501 972-1051(1265)
248 COG4105 ComL DNA uptake lipopr 95.0 2.6 5.5E-05 37.9 19.8 183 162-364 36-232 (254)
249 KOG0543 FKBP-type peptidyl-pro 94.9 0.59 1.3E-05 44.5 12.5 140 342-504 214-354 (397)
250 KOG2610 Uncharacterized conser 94.9 3.3 7.1E-05 38.6 17.6 116 279-396 116-234 (491)
251 PF13170 DUF4003: Protein of u 94.9 3.5 7.5E-05 38.7 20.7 128 283-412 79-223 (297)
252 COG4649 Uncharacterized protei 94.7 2.2 4.8E-05 35.6 15.5 135 160-295 58-196 (221)
253 COG1729 Uncharacterized protei 94.6 1.3 2.8E-05 40.0 13.3 106 163-269 144-252 (262)
254 KOG2114 Vacuolar assembly/sort 94.6 0.77 1.7E-05 47.8 13.1 246 198-469 335-589 (933)
255 KOG2610 Uncharacterized conser 94.5 1.6 3.5E-05 40.5 13.7 155 170-326 112-272 (491)
256 PF13512 TPR_18: Tetratricopep 94.3 1.3 2.8E-05 36.0 11.5 78 167-244 16-94 (142)
257 PRK11906 transcriptional regul 94.3 4.6 9.9E-05 39.8 17.2 119 176-295 273-401 (458)
258 KOG2114 Vacuolar assembly/sort 94.3 3.4 7.4E-05 43.3 17.0 254 160-442 333-595 (933)
259 PF08631 SPO22: Meiosis protei 94.0 5.2 0.00011 37.4 26.6 101 338-441 86-192 (278)
260 PRK11906 transcriptional regul 94.0 4.9 0.00011 39.5 16.7 116 352-470 274-401 (458)
261 PF07079 DUF1347: Protein of u 93.7 7.3 0.00016 38.0 31.9 138 170-313 15-179 (549)
262 COG3629 DnrI DNA-binding trans 93.7 0.89 1.9E-05 41.7 10.7 78 162-241 154-236 (280)
263 KOG4555 TPR repeat-containing 93.5 3 6.6E-05 33.0 11.9 91 345-436 52-145 (175)
264 PF04184 ST7: ST7 protein; In 93.5 8.1 0.00018 38.3 17.2 57 238-294 265-323 (539)
265 COG4785 NlpI Lipoprotein NlpI, 93.5 4.7 0.0001 35.2 16.8 118 94-226 44-162 (297)
266 COG0457 NrfG FOG: TPR repeat [ 93.5 5.2 0.00011 35.4 30.6 188 211-399 37-230 (291)
267 KOG1258 mRNA processing protei 93.4 9.8 0.00021 38.5 30.5 132 161-295 45-180 (577)
268 COG1729 Uncharacterized protei 93.2 1 2.2E-05 40.7 10.1 57 238-294 184-243 (262)
269 COG0457 NrfG FOG: TPR repeat [ 92.8 6.5 0.00014 34.7 30.5 225 279-506 36-266 (291)
270 PF13428 TPR_14: Tetratricopep 92.7 0.34 7.4E-06 30.3 4.7 20 204-223 8-27 (44)
271 PF13428 TPR_14: Tetratricopep 92.6 0.44 9.4E-06 29.8 5.1 41 162-204 2-42 (44)
272 PF10602 RPN7: 26S proteasome 92.5 2.3 5E-05 36.5 11.0 62 268-329 38-101 (177)
273 COG3629 DnrI DNA-binding trans 92.5 1.5 3.2E-05 40.4 10.2 76 269-345 156-236 (280)
274 KOG1941 Acetylcholine receptor 92.3 9.8 0.00021 36.0 15.0 130 269-398 125-273 (518)
275 KOG1920 IkappaB kinase complex 91.8 24 0.00053 39.0 22.0 28 512-539 1185-1212(1265)
276 PF13512 TPR_18: Tetratricopep 91.7 6.3 0.00014 32.1 12.2 56 381-436 20-77 (142)
277 PF07035 Mic1: Colon cancer-as 91.3 8.1 0.00017 32.6 15.3 100 323-432 16-115 (167)
278 PF07035 Mic1: Colon cancer-as 90.6 9.5 0.00021 32.2 15.2 136 286-435 14-149 (167)
279 PRK09687 putative lyase; Provi 90.6 15 0.00032 34.3 28.3 202 300-522 67-278 (280)
280 PF04184 ST7: ST7 protein; In 90.3 21 0.00045 35.6 17.3 79 370-448 258-338 (539)
281 PF09613 HrpB1_HrpK: Bacterial 90.2 9.7 0.00021 31.7 13.7 19 276-294 54-72 (160)
282 PF10602 RPN7: 26S proteasome 90.0 5.1 0.00011 34.4 10.7 61 373-433 38-100 (177)
283 KOG4570 Uncharacterized conser 89.9 2 4.4E-05 39.5 8.3 101 227-329 59-163 (418)
284 PF13929 mRNA_stabil: mRNA sta 89.7 16 0.00036 33.6 18.1 114 212-325 143-262 (292)
285 PF07575 Nucleopor_Nup85: Nup8 89.7 12 0.00027 39.0 15.3 116 404-521 403-540 (566)
286 KOG0276 Vesicle coat complex C 89.7 3.9 8.5E-05 41.2 10.6 150 313-502 598-747 (794)
287 KOG0276 Vesicle coat complex C 89.6 6.2 0.00014 39.9 11.9 151 172-362 597-747 (794)
288 PF13431 TPR_17: Tetratricopep 89.5 0.39 8.6E-06 28.1 2.5 28 259-286 6-33 (34)
289 PF13176 TPR_7: Tetratricopept 89.5 0.94 2E-05 26.8 4.2 26 478-503 1-26 (36)
290 KOG1550 Extracellular protein 89.4 30 0.00064 36.1 25.1 49 177-225 228-277 (552)
291 PF13176 TPR_7: Tetratricopept 88.7 1.1 2.3E-05 26.5 4.1 24 200-223 2-25 (36)
292 KOG4570 Uncharacterized conser 88.6 1.9 4.1E-05 39.7 7.2 104 155-260 58-163 (418)
293 COG1747 Uncharacterized N-term 88.5 28 0.00061 34.7 21.4 181 333-521 63-249 (711)
294 KOG1258 mRNA processing protei 88.3 32 0.0007 35.0 32.1 179 336-522 297-486 (577)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 88.2 3 6.5E-05 31.0 6.7 59 215-273 25-83 (103)
296 PF02259 FAT: FAT domain; Int 88.1 26 0.00057 33.8 24.1 52 168-224 5-56 (352)
297 PF04097 Nic96: Nup93/Nic96; 88.0 39 0.00084 35.7 21.1 62 162-226 113-181 (613)
298 COG4785 NlpI Lipoprotein NlpI, 87.8 18 0.0004 31.7 17.4 179 175-365 79-266 (297)
299 PF13431 TPR_17: Tetratricopep 87.8 0.93 2E-05 26.5 3.3 31 465-496 3-33 (34)
300 KOG1941 Acetylcholine receptor 87.5 26 0.00057 33.3 16.1 44 244-287 18-64 (518)
301 COG4649 Uncharacterized protei 87.0 17 0.00038 30.6 14.1 15 315-329 72-86 (221)
302 PF02284 COX5A: Cytochrome c o 86.8 8.7 0.00019 29.0 8.4 60 215-274 28-87 (108)
303 KOG0991 Replication factor C, 86.6 23 0.00049 31.5 13.2 139 338-486 132-282 (333)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 5.6 0.00012 29.7 7.2 46 318-363 24-69 (103)
305 PF02259 FAT: FAT domain; Int 86.0 34 0.00074 33.0 26.1 53 204-260 5-57 (352)
306 PF02284 COX5A: Cytochrome c o 85.5 12 0.00025 28.4 8.5 46 319-364 28-73 (108)
307 PF13929 mRNA_stabil: mRNA sta 85.3 31 0.00067 31.9 15.6 86 436-521 197-288 (292)
308 KOG1550 Extracellular protein 84.2 57 0.0012 34.0 24.9 186 142-332 229-428 (552)
309 PF13374 TPR_10: Tetratricopep 84.2 2.9 6.3E-05 25.3 4.5 28 477-504 3-30 (42)
310 KOG2066 Vacuolar assembly/sort 83.2 67 0.0014 34.0 28.1 105 167-278 362-467 (846)
311 PF13374 TPR_10: Tetratricopep 83.0 3.3 7.1E-05 25.1 4.4 27 198-224 3-29 (42)
312 TIGR02561 HrpB1_HrpK type III 82.3 26 0.00057 28.7 14.5 51 174-226 23-73 (153)
313 PF00637 Clathrin: Region in C 81.7 0.33 7.1E-06 40.1 -0.8 85 412-503 13-97 (143)
314 TIGR02561 HrpB1_HrpK type III 81.7 28 0.0006 28.6 12.2 20 276-295 54-73 (153)
315 COG4455 ImpE Protein of avirul 81.2 12 0.00027 32.8 8.3 77 408-485 3-81 (273)
316 PF00515 TPR_1: Tetratricopept 81.1 5.2 0.00011 22.9 4.5 29 477-505 2-30 (34)
317 KOG4234 TPR repeat-containing 81.1 36 0.00078 29.5 13.1 89 380-471 104-198 (271)
318 PF00637 Clathrin: Region in C 80.5 0.54 1.2E-05 38.8 0.1 83 342-431 13-95 (143)
319 PF11207 DUF2989: Protein of u 80.5 38 0.00083 29.5 11.1 71 179-251 124-197 (203)
320 COG4455 ImpE Protein of avirul 79.4 13 0.00029 32.6 7.9 52 203-255 7-58 (273)
321 KOG4648 Uncharacterized conser 79.2 11 0.00024 35.3 7.9 49 380-430 106-155 (536)
322 PF00515 TPR_1: Tetratricopept 79.2 6.5 0.00014 22.5 4.5 26 409-434 4-29 (34)
323 PF09613 HrpB1_HrpK: Bacterial 78.9 37 0.0008 28.3 14.1 51 383-435 22-73 (160)
324 PF11207 DUF2989: Protein of u 78.8 26 0.00056 30.5 9.5 71 389-460 124-197 (203)
325 KOG2063 Vacuolar assembly/sort 78.3 1.1E+02 0.0024 33.5 18.6 27 269-295 507-533 (877)
326 PF07719 TPR_2: Tetratricopept 78.2 7.1 0.00015 22.2 4.5 27 478-504 3-29 (34)
327 PF07163 Pex26: Pex26 protein; 77.9 37 0.0008 31.2 10.5 87 308-394 90-181 (309)
328 KOG2297 Predicted translation 77.5 61 0.0013 30.1 18.0 70 277-356 266-341 (412)
329 PRK15180 Vi polysaccharide bio 76.6 22 0.00047 35.1 9.3 147 229-377 286-432 (831)
330 PRK11619 lytic murein transgly 76.1 1.1E+02 0.0025 32.5 31.4 78 200-282 102-179 (644)
331 PF04097 Nic96: Nup93/Nic96; 76.0 1.1E+02 0.0024 32.4 18.1 43 202-245 116-158 (613)
332 PRK09687 putative lyase; Provi 75.9 69 0.0015 29.9 30.0 234 229-486 34-277 (280)
333 PHA02875 ankyrin repeat protei 75.7 82 0.0018 31.3 14.1 78 241-325 8-89 (413)
334 KOG4507 Uncharacterized conser 75.5 8.2 0.00018 38.9 6.4 103 193-295 603-705 (886)
335 TIGR03504 FimV_Cterm FimV C-te 75.4 5.5 0.00012 24.9 3.5 25 482-506 5-29 (44)
336 PF10345 Cohesin_load: Cohesin 75.3 1.2E+02 0.0025 32.2 31.9 181 216-397 40-251 (608)
337 PF07163 Pex26: Pex26 protein; 75.0 44 0.00096 30.7 10.2 89 271-359 88-181 (309)
338 KOG4077 Cytochrome c oxidase, 74.7 18 0.00039 28.5 6.8 55 218-272 70-124 (149)
339 COG3947 Response regulator con 74.0 75 0.0016 29.4 17.7 57 305-362 283-339 (361)
340 TIGR02508 type_III_yscG type I 73.7 37 0.00079 25.7 8.3 52 379-436 47-98 (115)
341 TIGR03504 FimV_Cterm FimV C-te 73.7 8.7 0.00019 24.0 4.1 24 272-295 5-28 (44)
342 PF07719 TPR_2: Tetratricopept 73.5 11 0.00024 21.3 4.5 27 268-294 3-29 (34)
343 PF13181 TPR_8: Tetratricopept 73.5 11 0.00024 21.4 4.5 27 478-504 3-29 (34)
344 KOG1464 COP9 signalosome, subu 73.0 75 0.0016 29.0 18.7 191 278-469 39-259 (440)
345 KOG0687 26S proteasome regulat 72.8 86 0.0019 29.6 15.1 97 371-469 104-209 (393)
346 PF06552 TOM20_plant: Plant sp 72.5 61 0.0013 27.7 10.5 42 317-366 96-137 (186)
347 COG3947 Response regulator con 71.4 87 0.0019 29.1 15.8 71 443-514 281-356 (361)
348 PF13762 MNE1: Mitochondrial s 71.2 57 0.0012 26.8 10.6 50 475-524 78-128 (145)
349 KOG4234 TPR repeat-containing 71.2 66 0.0014 28.0 9.9 90 344-435 103-197 (271)
350 COG5159 RPN6 26S proteasome re 70.7 89 0.0019 28.9 18.3 199 271-469 8-234 (421)
351 PF07721 TPR_4: Tetratricopept 70.7 7.1 0.00015 21.0 2.9 19 271-289 6-24 (26)
352 PF13181 TPR_8: Tetratricopept 70.3 14 0.00031 20.9 4.4 27 268-294 3-29 (34)
353 KOG4648 Uncharacterized conser 70.1 13 0.00028 34.9 6.0 53 169-223 105-157 (536)
354 COG2909 MalT ATP-dependent tra 69.7 1.7E+02 0.0037 31.7 35.2 225 277-501 426-684 (894)
355 PF11848 DUF3368: Domain of un 69.5 21 0.00046 22.8 5.3 33 487-519 13-45 (48)
356 PF06552 TOM20_plant: Plant sp 69.1 61 0.0013 27.7 9.2 67 387-454 7-82 (186)
357 KOG4077 Cytochrome c oxidase, 69.0 36 0.00078 27.0 7.2 59 319-378 67-125 (149)
358 COG2976 Uncharacterized protei 67.2 84 0.0018 27.3 14.7 88 414-506 97-189 (207)
359 COG5159 RPN6 26S proteasome re 67.2 1.1E+02 0.0023 28.4 18.2 197 238-434 9-234 (421)
360 PF13174 TPR_6: Tetratricopept 66.9 7.7 0.00017 21.8 2.7 18 206-223 9-26 (33)
361 PF13762 MNE1: Mitochondrial s 63.9 81 0.0018 25.9 10.6 47 442-488 80-127 (145)
362 PF14689 SPOB_a: Sensor_kinase 63.6 20 0.00044 24.4 4.6 47 176-225 5-51 (62)
363 KOG0686 COP9 signalosome, subu 63.3 1.5E+02 0.0033 28.9 14.9 172 268-448 152-351 (466)
364 PF11846 DUF3366: Domain of un 63.1 27 0.0006 30.4 6.7 51 139-189 122-172 (193)
365 PHA02875 ankyrin repeat protei 62.7 55 0.0012 32.6 9.6 211 273-512 6-231 (413)
366 KOG4507 Uncharacterized conser 62.2 66 0.0014 32.9 9.4 129 249-379 590-718 (886)
367 PF11846 DUF3366: Domain of un 62.0 41 0.00088 29.3 7.6 32 472-503 140-171 (193)
368 COG1747 Uncharacterized N-term 61.4 1.9E+02 0.0041 29.3 25.7 63 231-295 65-127 (711)
369 KOG2297 Predicted translation 60.9 1.5E+02 0.0032 27.8 23.6 35 97-131 32-66 (412)
370 COG5108 RPO41 Mitochondrial DN 59.0 51 0.0011 34.2 8.2 90 411-503 33-130 (1117)
371 KOG2659 LisH motif-containing 59.0 1.3E+02 0.0027 26.9 9.7 69 156-224 21-91 (228)
372 PF11848 DUF3368: Domain of un 58.7 42 0.00091 21.4 5.2 31 418-448 14-44 (48)
373 KOG0991 Replication factor C, 58.5 1.4E+02 0.003 26.8 12.3 103 347-453 170-284 (333)
374 KOG0890 Protein kinase of the 58.5 4.4E+02 0.0095 32.5 28.8 152 202-360 1388-1542(2382)
375 PF10345 Cohesin_load: Cohesin 57.5 2.6E+02 0.0056 29.7 38.6 400 138-540 73-606 (608)
376 KOG0292 Vesicle coat complex C 57.3 1.3E+02 0.0028 32.6 10.9 159 165-365 624-782 (1202)
377 COG5108 RPO41 Mitochondrial DN 57.2 74 0.0016 33.0 8.9 90 237-329 33-131 (1117)
378 KOG1586 Protein required for f 56.8 1.5E+02 0.0032 26.7 21.6 22 382-403 165-186 (288)
379 KOG0890 Protein kinase of the 56.7 4.7E+02 0.01 32.3 26.1 315 168-505 1390-1731(2382)
380 PF09477 Type_III_YscG: Bacter 56.6 90 0.0019 24.0 8.8 79 351-436 21-99 (116)
381 PF10579 Rapsyn_N: Rapsyn N-te 56.4 43 0.00092 24.1 5.2 12 421-432 21-32 (80)
382 TIGR02508 type_III_yscG type I 56.1 88 0.0019 23.8 8.3 48 313-366 51-98 (115)
383 COG2976 Uncharacterized protei 56.0 1.4E+02 0.003 26.0 15.5 89 378-471 96-189 (207)
384 cd08819 CARD_MDA5_2 Caspase ac 55.7 81 0.0017 23.2 7.0 14 350-363 50-63 (88)
385 KOG2063 Vacuolar assembly/sort 54.4 3.4E+02 0.0073 30.0 16.5 29 234-262 506-534 (877)
386 KOG4642 Chaperone-dependent E3 54.4 1.7E+02 0.0036 26.5 10.3 114 210-325 23-141 (284)
387 KOG1464 COP9 signalosome, subu 54.3 1.8E+02 0.0038 26.7 21.8 251 174-431 40-328 (440)
388 KOG3807 Predicted membrane pro 54.0 1.5E+02 0.0033 27.9 9.8 49 244-292 287-337 (556)
389 KOG2908 26S proteasome regulat 53.7 2E+02 0.0043 27.4 10.4 58 412-469 81-143 (380)
390 KOG1586 Protein required for f 53.6 1.7E+02 0.0037 26.3 18.2 17 171-187 24-40 (288)
391 smart00386 HAT HAT (Half-A-TPR 52.8 30 0.00066 19.0 3.7 24 248-271 3-26 (33)
392 KOG1114 Tripeptidyl peptidase 52.3 3.6E+02 0.0079 29.8 15.8 50 405-454 1230-1280(1304)
393 PF08424 NRDE-2: NRDE-2, neces 51.7 2.2E+02 0.0048 27.2 18.3 46 389-435 49-94 (321)
394 cd08819 CARD_MDA5_2 Caspase ac 51.6 96 0.0021 22.9 7.4 66 285-356 21-86 (88)
395 cd00280 TRFH Telomeric Repeat 51.4 1.2E+02 0.0025 26.1 7.8 24 272-295 117-140 (200)
396 PF07575 Nucleopor_Nup85: Nup8 51.4 82 0.0018 33.0 8.9 76 321-398 390-465 (566)
397 PF08424 NRDE-2: NRDE-2, neces 51.3 2.3E+02 0.0049 27.1 18.1 78 214-292 48-128 (321)
398 PF11663 Toxin_YhaV: Toxin wit 50.9 19 0.00041 28.9 3.1 29 385-415 109-137 (140)
399 smart00028 TPR Tetratricopepti 50.9 31 0.00067 18.2 3.6 27 478-504 3-29 (34)
400 PRK10564 maltose regulon perip 50.5 33 0.00072 31.9 5.1 35 369-403 254-289 (303)
401 PF09454 Vps23_core: Vps23 cor 50.1 28 0.0006 24.0 3.5 51 158-210 5-55 (65)
402 PRK10564 maltose regulon perip 50.0 38 0.00082 31.5 5.3 41 438-478 253-294 (303)
403 PF09670 Cas_Cas02710: CRISPR- 49.9 2.6E+02 0.0057 27.5 12.4 56 344-400 139-198 (379)
404 KOG4642 Chaperone-dependent E3 49.8 2E+02 0.0043 26.0 11.1 101 381-485 20-126 (284)
405 PF04190 DUF410: Protein of un 49.8 2.1E+02 0.0046 26.3 20.1 27 263-289 87-113 (260)
406 PF10579 Rapsyn_N: Rapsyn N-te 49.3 58 0.0013 23.4 5.0 46 488-533 18-65 (80)
407 PF10366 Vps39_1: Vacuolar sor 49.0 80 0.0017 24.4 6.3 26 269-294 42-67 (108)
408 PF14689 SPOB_a: Sensor_kinase 48.8 44 0.00094 22.7 4.3 23 411-433 28-50 (62)
409 KOG4521 Nuclear pore complex, 48.6 4.4E+02 0.0095 29.9 13.3 187 202-396 925-1127(1480)
410 COG0735 Fur Fe2+/Zn2+ uptake r 48.4 1.1E+02 0.0023 25.2 7.4 60 325-385 10-69 (145)
411 PRK10941 hypothetical protein; 48.3 1.4E+02 0.0031 27.6 8.9 60 236-295 185-244 (269)
412 cd00280 TRFH Telomeric Repeat 47.9 1.4E+02 0.0031 25.6 7.9 38 413-453 118-155 (200)
413 COG0735 Fur Fe2+/Zn2+ uptake r 47.7 1E+02 0.0022 25.4 7.1 60 466-526 11-70 (145)
414 COG5187 RPN7 26S proteasome re 47.6 2.4E+02 0.0052 26.3 13.6 97 266-364 115-220 (412)
415 KOG4567 GTPase-activating prot 47.5 2.5E+02 0.0054 26.5 10.0 71 426-501 263-343 (370)
416 KOG2034 Vacuolar sorting prote 47.4 4.2E+02 0.009 29.0 28.3 51 168-223 365-415 (911)
417 PF11817 Foie-gras_1: Foie gra 47.1 1E+02 0.0023 28.1 7.9 54 201-254 182-240 (247)
418 PRK13342 recombination factor 44.8 3.3E+02 0.0072 27.1 20.0 21 280-300 244-264 (413)
419 PF12862 Apc5: Anaphase-promot 44.8 1.3E+02 0.0028 22.4 7.3 24 482-505 47-70 (94)
420 PF11663 Toxin_YhaV: Toxin wit 44.3 27 0.00059 28.0 3.0 30 314-345 108-137 (140)
421 PF00244 14-3-3: 14-3-3 protei 43.4 2.5E+02 0.0055 25.4 10.7 48 458-505 143-198 (236)
422 KOG2659 LisH motif-containing 43.0 2.5E+02 0.0053 25.1 10.3 65 193-259 22-91 (228)
423 PF10475 DUF2450: Protein of u 42.9 2.5E+02 0.0054 26.4 9.9 52 272-329 104-155 (291)
424 COG2909 MalT ATP-dependent tra 41.6 5.1E+02 0.011 28.4 36.5 41 112-153 197-238 (894)
425 PRK09857 putative transposase; 40.9 2.1E+02 0.0045 27.0 8.9 55 244-298 218-272 (292)
426 COG2256 MGS1 ATPase related to 40.8 3.7E+02 0.008 26.5 14.3 33 315-347 263-295 (436)
427 KOG0376 Serine-threonine phosp 40.7 65 0.0014 32.0 5.6 52 381-434 14-66 (476)
428 PF11838 ERAP1_C: ERAP1-like C 40.5 3.3E+02 0.0071 25.8 18.3 233 273-509 45-310 (324)
429 KOG4567 GTPase-activating prot 40.3 1.8E+02 0.004 27.3 8.0 57 391-452 263-319 (370)
430 PF04910 Tcf25: Transcriptiona 40.3 3.6E+02 0.0079 26.3 21.0 121 193-329 36-167 (360)
431 PF10475 DUF2450: Protein of u 39.9 3.1E+02 0.0067 25.8 10.1 115 341-466 103-222 (291)
432 PF14853 Fis1_TPR_C: Fis1 C-te 39.7 1.1E+02 0.0023 20.1 5.4 37 481-519 6-42 (53)
433 COG5187 RPN7 26S proteasome re 39.7 3.2E+02 0.0069 25.5 14.4 24 372-395 116-139 (412)
434 PRK14700 recombination factor 39.2 3.3E+02 0.0073 25.6 13.3 36 280-315 140-175 (300)
435 COG2256 MGS1 ATPase related to 39.0 3.9E+02 0.0085 26.4 15.7 92 339-430 249-348 (436)
436 COG0790 FOG: TPR repeat, SEL1 38.6 3.3E+02 0.0071 25.3 25.2 82 279-366 54-143 (292)
437 PF09670 Cas_Cas02710: CRISPR- 38.4 4E+02 0.0086 26.2 12.4 53 276-329 141-197 (379)
438 KOG3677 RNA polymerase I-assoc 37.5 3E+02 0.0065 27.1 9.2 58 270-328 239-299 (525)
439 KOG0686 COP9 signalosome, subu 37.2 4.2E+02 0.0091 26.1 14.7 158 234-399 152-332 (466)
440 PRK09857 putative transposase; 36.4 3.7E+02 0.0081 25.3 10.5 62 341-403 211-272 (292)
441 KOG0687 26S proteasome regulat 36.3 3.9E+02 0.0084 25.5 15.3 133 228-364 66-209 (393)
442 PRK11639 zinc uptake transcrip 35.8 1.9E+02 0.0041 24.5 7.2 61 432-493 17-77 (169)
443 PF09477 Type_III_YscG: Bacter 35.7 2.1E+02 0.0045 22.2 8.6 16 278-293 81-96 (116)
444 PF09868 DUF2095: Uncharacteri 35.6 1.4E+02 0.0031 23.1 5.5 26 166-191 66-91 (128)
445 cd07153 Fur_like Ferric uptake 35.3 99 0.0022 24.0 5.2 45 448-492 7-51 (116)
446 PF10366 Vps39_1: Vacuolar sor 35.2 2.1E+02 0.0046 22.1 7.2 26 339-364 42-67 (108)
447 PRK14700 recombination factor 35.1 3.9E+02 0.0085 25.2 11.9 65 304-368 126-198 (300)
448 PF11817 Foie-gras_1: Foie gra 34.9 2.3E+02 0.005 25.8 8.2 16 483-498 225-240 (247)
449 PF02847 MA3: MA3 domain; Int 34.3 1.9E+02 0.0041 22.2 6.7 17 310-326 11-27 (113)
450 PF02847 MA3: MA3 domain; Int 34.3 1.8E+02 0.004 22.3 6.6 19 378-396 9-27 (113)
451 PRK09462 fur ferric uptake reg 34.3 2.4E+02 0.0052 23.2 7.5 60 432-492 8-68 (148)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 34.2 2.4E+02 0.0052 22.5 9.9 44 179-222 81-124 (126)
453 KOG2471 TPR repeat-containing 34.1 5.2E+02 0.011 26.3 12.7 107 416-524 250-382 (696)
454 PF07678 A2M_comp: A-macroglob 34.1 2.4E+02 0.0051 25.7 8.1 29 477-505 193-221 (246)
455 PF07064 RIC1: RIC1; InterPro 33.9 3.8E+02 0.0082 24.7 15.8 26 164-189 85-110 (258)
456 PRK08691 DNA polymerase III su 33.9 6.3E+02 0.014 27.2 11.9 47 387-435 180-227 (709)
457 KOG2066 Vacuolar assembly/sort 33.5 6.5E+02 0.014 27.2 27.5 131 154-293 382-532 (846)
458 PF01475 FUR: Ferric uptake re 33.4 86 0.0019 24.6 4.6 48 480-527 11-58 (120)
459 PF12862 Apc5: Anaphase-promot 32.6 2.1E+02 0.0045 21.3 7.1 19 310-328 50-68 (94)
460 COG0790 FOG: TPR repeat, SEL1 32.0 4.2E+02 0.0091 24.6 23.0 86 244-334 53-146 (292)
461 PF14561 TPR_20: Tetratricopep 32.0 2.1E+02 0.0046 21.2 7.3 33 193-225 18-50 (90)
462 PRK10941 hypothetical protein; 31.3 4.3E+02 0.0094 24.5 11.1 75 446-521 186-261 (269)
463 PF11123 DNA_Packaging_2: DNA 31.2 1.7E+02 0.0038 20.6 4.9 33 247-279 12-44 (82)
464 COG4003 Uncharacterized protei 30.9 1.8E+02 0.004 20.9 5.1 24 166-189 36-59 (98)
465 COG2178 Predicted RNA-binding 30.1 3.7E+02 0.0081 23.4 10.3 28 407-434 30-57 (204)
466 KOG1308 Hsp70-interacting prot 30.0 41 0.00088 31.9 2.3 90 209-299 126-215 (377)
467 PHA03100 ankyrin repeat protei 30.0 4.7E+02 0.01 26.5 10.6 234 217-465 48-304 (480)
468 PF04910 Tcf25: Transcriptiona 30.0 5.3E+02 0.012 25.2 22.7 29 300-328 39-67 (360)
469 KOG1308 Hsp70-interacting prot 29.4 97 0.0021 29.5 4.6 89 383-474 126-215 (377)
470 PRK13342 recombination factor 29.2 5.8E+02 0.013 25.4 20.7 22 385-406 244-265 (413)
471 COG2178 Predicted RNA-binding 29.2 3.9E+02 0.0084 23.3 10.2 17 242-258 39-55 (204)
472 PF12926 MOZART2: Mitotic-spin 29.0 2.4E+02 0.0052 20.8 7.8 42 462-503 29-70 (88)
473 KOG2582 COP9 signalosome, subu 28.8 5.5E+02 0.012 24.9 19.4 55 452-506 288-346 (422)
474 PF03745 DUF309: Domain of unk 28.2 2E+02 0.0043 19.6 5.8 13 420-432 13-25 (62)
475 PF09454 Vps23_core: Vps23 cor 27.8 1.7E+02 0.0038 20.1 4.6 28 409-436 11-38 (65)
476 PF14561 TPR_20: Tetratricopep 27.7 2.6E+02 0.0055 20.7 8.1 34 262-295 18-51 (90)
477 PRK14962 DNA polymerase III su 27.5 6.8E+02 0.015 25.6 12.9 27 313-339 255-281 (472)
478 PRK14958 DNA polymerase III su 26.7 7.3E+02 0.016 25.7 12.4 46 388-435 181-227 (509)
479 PF01316 Arg_repressor: Argini 26.6 2E+02 0.0043 20.2 4.7 41 98-138 8-49 (70)
480 KOG0403 Neoplastic transformat 26.6 6.6E+02 0.014 25.2 21.0 62 444-506 512-573 (645)
481 cd07153 Fur_like Ferric uptake 26.3 1.6E+02 0.0034 22.8 5.0 45 204-248 7-51 (116)
482 PRK11639 zinc uptake transcrip 26.2 3.2E+02 0.0069 23.2 7.0 47 202-248 30-76 (169)
483 PF06855 DUF1250: Protein of u 25.9 1.1E+02 0.0024 19.2 3.2 41 148-188 2-42 (46)
484 PF04090 RNA_pol_I_TF: RNA pol 25.6 3.9E+02 0.0086 23.4 7.4 36 407-443 42-77 (199)
485 PF04090 RNA_pol_I_TF: RNA pol 25.3 3.6E+02 0.0078 23.6 7.1 58 164-223 44-102 (199)
486 PRK09462 fur ferric uptake reg 25.2 3.9E+02 0.0084 22.0 7.6 34 352-385 33-66 (148)
487 PRK14956 DNA polymerase III su 24.9 7.6E+02 0.016 25.3 12.4 36 151-188 192-227 (484)
488 PF12926 MOZART2: Mitotic-spin 24.8 2.9E+02 0.0063 20.4 8.1 41 357-397 29-69 (88)
489 PF07840 FadR_C: FadR C-termin 24.5 4.1E+02 0.009 22.4 7.0 29 124-152 47-77 (164)
490 PF02607 B12-binding_2: B12 bi 24.4 1.6E+02 0.0035 20.8 4.3 33 489-521 14-46 (79)
491 PF04762 IKI3: IKI3 family; I 24.1 1.1E+03 0.023 26.7 17.6 27 339-365 815-843 (928)
492 PRK14963 DNA polymerase III su 23.6 8.2E+02 0.018 25.2 11.0 88 140-230 176-274 (504)
493 PF00356 LacI: Bacterial regul 23.4 1E+02 0.0022 19.5 2.6 35 126-160 12-46 (46)
494 KOG0403 Neoplastic transformat 23.3 7.7E+02 0.017 24.8 15.7 25 199-223 347-371 (645)
495 cd08315 Death_TRAILR_DR4_DR5 D 23.3 2.7E+02 0.0058 21.0 5.3 48 492-541 47-94 (96)
496 PRK06645 DNA polymerase III su 23.2 8.4E+02 0.018 25.2 11.2 44 144-189 192-235 (507)
497 PF14669 Asp_Glu_race_2: Putat 23.1 5.1E+02 0.011 22.6 15.1 163 329-501 1-206 (233)
498 PF15297 CKAP2_C: Cytoskeleton 23.0 6.9E+02 0.015 24.1 10.1 82 408-491 105-190 (353)
499 TIGR01503 MthylAspMut_E methyl 22.9 6.9E+02 0.015 25.2 9.2 179 281-473 29-244 (480)
500 PRK13341 recombination factor 22.7 1E+03 0.022 26.0 18.1 150 351-504 169-360 (725)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-60 Score=503.46 Aligned_cols=414 Identities=21% Similarity=0.276 Sum_probs=335.3
Q ss_pred CCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHH
Q 009011 125 VSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST 202 (546)
Q Consensus 125 ~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~ 202 (546)
|+..++..+++.|+ ++.+.|+.+|..+.. .|+.||..+|+.||.+|++.|++++|.++|++|.+.+ ..|+..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 56666777777765 366677777777753 6788888888888888888888888888888888766 7788888888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhc
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD---CIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~ 279 (546)
+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ++.||..+|++||.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 8888888888888888888888888888888888888888888888888888888753 4677888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP 439 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 439 (546)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CChHHHH
Q 009011 440 DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----S-------------------GKLELAC 496 (546)
Q Consensus 440 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~A~ 496 (546)
|..||+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++..|.+ + +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 8888888888888888888888888888888888888888888765331 1 2245688
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 497 SFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 497 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|...
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 88888888888888888888887777777777777777666533
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-59 Score=492.92 Aligned_cols=423 Identities=18% Similarity=0.293 Sum_probs=358.6
Q ss_pred CChHHHHHHHhcCCCC-CCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 009011 109 QSPDKVVEALKGCGVS-VSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185 (546)
Q Consensus 109 ~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~ 185 (546)
..+.++++.|...|+. ++.-....+++.|. +....|+.+|..+. .||..+|+.++.+|++.|+++.|.++|+
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3455677888877764 44444455666654 35677787777664 2888899999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCC
Q 009011 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPL 264 (546)
Q Consensus 186 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~ 264 (546)
+|.+.+ ..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ++.|
T Consensus 462 ~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 988866 78888899999999999999999999999998888888999999999999999999999999988875 7888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009011 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQ--QGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV 342 (546)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (546)
|..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 888999999999999999999999998876 578888889999999999999999999999999988888888899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009011 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEE 422 (546)
Q Consensus 343 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 422 (546)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999888888898899999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 423 ENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 423 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999999988888899999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 503 ISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 503 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.+.|+.||..+|+.++..|. ++++++.++.+.+..
T Consensus 781 ~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS 815 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh
Confidence 88888999888888886654 345666555544433
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-59 Score=501.84 Aligned_cols=477 Identities=16% Similarity=0.182 Sum_probs=378.6
Q ss_pred hhhhhhhhhccCCCCccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccccccccccccccccCCCCchhh
Q 009011 17 QKHAKIYYLCYLSCNPLCTTAESPSSTESPSLPSWIKFFDSQSPDEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETD 96 (546)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (546)
++|++.++.+. .+++...|+....|.+.+.+..+.+.|+.++.++.++|+++.+.+.+.+.
T Consensus 107 ~~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~------------------ 167 (857)
T PLN03077 107 RVCSRALSSHP-SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY------------------ 167 (857)
T ss_pred HHHHHHHHcCC-CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC------------------
Confidence 55666665554 35556666666677788888888888888887777777766553333221
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhcCCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcC
Q 009011 97 VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKS 174 (546)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~ 174 (546)
...+.+++..|...|+.|+..++..+++.|.. +...+..++..+. +.|+.||..+|+.||.+|+++
T Consensus 168 -----------~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 168 -----------FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV-RFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred -----------HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH-HcCCCcccchHhHHHHHHhcC
Confidence 12344577788888999999999999999875 4555677777765 478999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
|+++.|.++|++|.. ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 236 g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 236 GDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999865 356789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 255 FLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 255 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
+..+.+ ++.+|..+||+|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 988876 7889999999999999999999999999999864 68899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMI 413 (546)
Q Consensus 334 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 413 (546)
||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|++||.+|++.|++++|.++|++|.+ +|..+|+.+|
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi 462 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSII 462 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998864 5778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------
Q 009011 414 SSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV--------------------- 472 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------------------- 472 (546)
.+|++.|+.++|+++|++|.+ ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 888888888888888888875 4677776666655555544444444444444433332
Q ss_pred ---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 473 ---------SMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 473 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.+++.++++.|.
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666666666666666666666666666665
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-57 Score=481.16 Aligned_cols=416 Identities=17% Similarity=0.219 Sum_probs=379.7
Q ss_pred ChHHHHHHHhcC-CCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 009011 110 SPDKVVEALKGC-GVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKE 186 (546)
Q Consensus 110 ~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~ 186 (546)
.+.++++.|... +..|+..++..++.+|.. +.+.+..++..+. +.|+.||..+|+.|+++|++.|+++.|.++|++
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 345677778764 478999999999999864 5667788887775 479999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCC
Q 009011 187 MDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPLS 265 (546)
Q Consensus 187 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~ 265 (546)
|.+ ++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+ +..+|
T Consensus 184 m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 184 MPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred CCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 965 568899999999999999999999999999999999999999999999999999999999988766 78889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA 345 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 345 (546)
..+||+|+.+|+++|++++|.++|++|.. +|.++||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999974 59999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 346 LGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENA 425 (546)
Q Consensus 346 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 425 (546)
|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|+++|+.++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999974 7899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 426 LKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 426 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 99999999999999999999999999999999999999999986 799999999999999999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 505 KGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 505 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
++.|+..+|+.++.+|...|+.+.++++++.+.+.+.
T Consensus 489 -~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 489 -PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 6788888888888888877777777777777655443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-58 Score=494.66 Aligned_cols=477 Identities=15% Similarity=0.155 Sum_probs=431.5
Q ss_pred hhhhhhhhhccCCCCccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccccccccccccccccCCCCchhh
Q 009011 17 QKHAKIYYLCYLSCNPLCTTAESPSSTESPSLPSWIKFFDSQSPDEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETD 96 (546)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (546)
++|++.++.|.. ++++..++....|...+.+..+.++|+.++.++..+|+++...+...+.
T Consensus 208 ~~~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~------------------ 268 (857)
T PLN03077 208 EVHAHVVRFGFE-LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGE------------------ 268 (857)
T ss_pred HHHHHHHHcCCC-cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCC------------------
Confidence 678888887754 6777777777778888888888888888877777777666543333221
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhcCCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcC
Q 009011 97 VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKS 174 (546)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~ 174 (546)
...+.+++..|...|+.|+..++..++.+|.. +.+.+.+++..+.. .|+.||..+||.||.+|++.
T Consensus 269 -----------~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 269 -----------CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred -----------HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhc
Confidence 22345688889999999999999999999864 67778888888864 79999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
|++++|.++|++|.. ++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 337 g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 337 GSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred CCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999964 457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 255 FLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 255 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
++.+.+ +..++..+||+|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 999877 7899999999999999999999999999999975 5899999999999999999999999999986 599
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMI 413 (546)
Q Consensus 334 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 413 (546)
||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+++++|++|++.|++++|.++|+.+ .||..+||++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 48999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 414 SSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF-KNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++.+|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 689999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 493 ELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 493 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
++|.+++++| .+.||..+|.+++.+|...|+.+.++...+.+.+...
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 9999999999 4889999999999988777777777776666655443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-54 Score=458.36 Aligned_cols=415 Identities=19% Similarity=0.230 Sum_probs=392.7
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD 188 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~ 188 (546)
..++...+...|+.|+..++..++..+. ++.+.|.++|+.+. .||..+||.++.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567777888899999999999999885 47888999999874 4899999999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHH
Q 009011 189 ELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI 268 (546)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 268 (546)
+.+ ..++..+|+.++.++++.|..+.+.+++..+.+.|+.+|..+++.|+++|++.|++++|.++|++|.. +|..+
T Consensus 217 ~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt 292 (697)
T PLN03081 217 EDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVA 292 (697)
T ss_pred HhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhH
Confidence 977 88999999999999999999999999999999999999999999999999999999999999999974 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
||+|+.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+|.+|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 349 AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++
T Consensus 373 ~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 373 WGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999964 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009011 429 LQKMEE-DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI 507 (546)
Q Consensus 429 ~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 507 (546)
|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++. ++
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~ 523 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GM 523 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CC
Confidence 999976 699999999999999999999999999998876 578999999999999999999999999999997 45
Q ss_pred CCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 508 VPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 508 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
.|+ ..+|..+++.|.+.|++++|.++++.|++.+-+
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 564 679999999999999999999999999987754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.3e-23 Score=231.82 Aligned_cols=385 Identities=11% Similarity=0.063 Sum_probs=269.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+.+.|...|..+... .+.+..++..+...+.+.|++++|..+|+++.. . .+.+...+..++..+.+.|++++|+++
T Consensus 514 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 514 NPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-L-NPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 444555555544421 233455566666666666666666666666655 2 344555566666666666666666666
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
++.+.+.. +.+..++..+..++...|++++|...|+.+....|.+...+..+...+.+.|++++|..+++++.+....
T Consensus 590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 667 (899)
T TIGR02917 590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD- 667 (899)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 66665532 4556666667777777777777777776666555566666677777777777777777777776655322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 45666777777777777777777777776654 3355666667777777777777777777777654 34456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+...+..+...+...|+ ++
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH
Confidence 7778888888888887777644 3366777777778888888888888888887764 4567777888888888888 77
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 460 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
|..+++++.+..+. +..++..+...+...|++++|.++++++++.+.. +..++..+..++.+.|+.++|.++++.|.
T Consensus 822 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888775444 5667777888888899999999999999987643 78888888899999999999999888774
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.3e-22 Score=223.67 Aligned_cols=389 Identities=13% Similarity=0.061 Sum_probs=224.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+.+.|...|..+... .+.+...+..+...+...|++++|.+.|+++.+ . .+.+..++..+...+.+.|++++|..+
T Consensus 480 ~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 480 DLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT-I-DPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444321 122333444455555555555555555555544 2 334445555555555555555555555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
|+++.+.+ +.+...+..+...+...|+.++|.++++.+....|.+..+|..+...+.+.|++++|...|+++.+....
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD- 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 55554432 3344445555555555566666666655555555555556666666666666666666666665554321
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 44455555566666666666666666655542 2244555566666666666666666666665554 335555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
.+.+.|++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 6666666666666666666543 333555556666666666666666666666543 4455666666666667777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 460 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
|...++++.+..+. +..+++.+...+...|+ .+|...++++.+.. +-+..++..+...+...|++++|.++++.+.+
T Consensus 789 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 789 AIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777665443 56666667777777777 66777777766542 22344555666667777777777777777765
Q ss_pred Hhh
Q 009011 540 AKE 542 (546)
Q Consensus 540 ~~~ 542 (546)
...
T Consensus 866 ~~~ 868 (899)
T TIGR02917 866 IAP 868 (899)
T ss_pred hCC
Confidence 543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.2e-20 Score=186.99 Aligned_cols=305 Identities=13% Similarity=0.092 Sum_probs=155.1
Q ss_pred HHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcc
Q 009011 169 DVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---TRALSVLMDTLVKG 245 (546)
Q Consensus 169 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~ 245 (546)
..+...|++++|.+.|+++.+ . .+.+..++..+...+...|++++|+++++.+.+.+..++ ..++..+...+.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLK-V-DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHh-c-CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344555666666666666665 2 444555666666666666666666666666654321111 12334444445555
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (546)
|++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 5555555555544443334444444455555555555555555554444322211100
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405 (546)
Q Consensus 326 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 405 (546)
....+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.++++++.+.+....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 01123334444555555555555555555432 22344445555555555666666666555554322111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009011 406 VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG 485 (546)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 485 (546)
..+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 234555555566666666666666665554 344444455555566666666666666655543 3455555555555
Q ss_pred HHH---cCChHHHHHHHHHHHHCCCCCCH
Q 009011 486 LIE---SGKLELACSFFEEMISKGIVPYH 511 (546)
Q Consensus 486 ~~~---~g~~~~A~~~~~~m~~~g~~p~~ 511 (546)
+.. .|+.+++..++++|.++++.|++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 443 34566666666666655544443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.2e-20 Score=187.10 Aligned_cols=312 Identities=13% Similarity=0.130 Sum_probs=251.1
Q ss_pred CCCCCHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC---CHH
Q 009011 122 GVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV---SLA 198 (546)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~---~~~ 198 (546)
........+..+.....++.+.|+..|..+... .+.+..++..+...+...|++++|..+++.+.... ... ...
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 108 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLL 108 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 455666666677666778899999999999853 34566789999999999999999999999998732 222 235
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-----HHHHHHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS-----SQIFNILI 273 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~li 273 (546)
.+..+...|.+.|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+....+.+ ...+..+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 68889999999999999999999998753 5678889999999999999999999999987643333 22456778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN 353 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 353 (546)
..+.+.|++++|...|+++.+.... +...+..+...|.+.|++++|.++++++.+.+......++..++.+|.+.|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 8888999999999999999876432 466778888899999999999999999887643333456788888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA---RSEEENALKLLQ 430 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 430 (546)
+|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 9999999888764 55566688888899999999999999888765 5788888888877664 458888999999
Q ss_pred HHHHCCCCCCHH
Q 009011 431 KMEEDLCKPDCE 442 (546)
Q Consensus 431 ~m~~~~~~p~~~ 442 (546)
+|.+.+++|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 998877777765
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2e-18 Score=179.69 Aligned_cols=330 Identities=12% Similarity=0.039 Sum_probs=184.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
++..+.+.|++++|..+++.... . .+.+...+..++......|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~-~-~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVL-T-AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHH-h-CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34445556666666666666655 2 44445555555555556666666666666665542 344455555556666666
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
+.++|...+++.....|.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 6666666666665555555666666666666666666666666655544332 12222222 235556666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD----ANEIFEDMKKQGV 402 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~ 402 (546)
+.+....++...+..+..++.+.|++++|...++++.+.. +.+...+..+...|...|++++ |...|++..+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 5554322333334444555566666666666666666543 3345555556666666666654 5666666655432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++.+.+.++. +...+..+
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~ 358 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYA 358 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 244555566666666666666666666665542 223344555555666666666666666666654322 22223334
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC
Q 009011 483 VRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..++...|++++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 45556666666666666666544
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=2.6e-17 Score=183.02 Aligned_cols=387 Identities=10% Similarity=0.017 Sum_probs=235.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHH------------HHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS------------TIMRR 206 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~------------~li~~ 206 (546)
++.+.|+..|..+... .+.+..++..|..+|.+.|++++|+..|++..+..+.......|. .....
T Consensus 283 g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 3555666666666532 233556666677777777777777777776665331211111111 12334
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.|++.....|.+...+..+...|. .++.++|.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 556677777777777766543 3445556666666777777777777776666555555555544444442 22334444
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 287 KAMKEMFQQGFS--------PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 287 ~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 358 (546)
.+++.+...... .....+..+...+...|++++|.+.+++..+.... +...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 443332211000 00112223344455566777777777666655322 444555666666667777777777
Q ss_pred HHHHHhCCCCCCHHHHHH--------------------------------------------HHHHHHhcCCHHHHHHHH
Q 009011 359 YEKMKSDDCLPDTSFYSS--------------------------------------------LIFILSKAGRVKDANEIF 394 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~~ 394 (546)
++++.+.. +.+...+.. +...+...|+.++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 76665543 112222222 233444555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
+. .+.+...+..+...+.+.|+.++|++.|++..+.. +.+...+..+...+...|+.++|.+.++...+....
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~- 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND- 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-
Confidence 41 12355566677788888999999999999988864 446778888888899999999999999987765433
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKGI--VP---YHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
+...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|.+.++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556677788888889999999999999886532 12 22455566777888899999998888764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=5.5e-17 Score=169.47 Aligned_cols=256 Identities=7% Similarity=0.036 Sum_probs=199.4
Q ss_pred CCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQG-FSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALK 357 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 357 (546)
+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 57889999999988764 223 45667788888889999999999999988763 2245678888888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 358 VYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437 (546)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 437 (546)
.|+++.+.. +.+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++|+..+++..+..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999988765 44678888899999999999999999999987642 256677778888899999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 009011 438 KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG------TYASLVRGLIESGKLELACSFFEEMISKGIVPY- 510 (546)
Q Consensus 438 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 510 (546)
+.+...+..+...+...|++++|...++...+.....+.. .++.....+...|++++|.+++++..+.. |+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~ 541 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PEC 541 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc
Confidence 4456788888889999999999999999988754432211 11222223344699999999999988654 44
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 511 HSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
...+..+...+...|+.++|.++++...+..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4467788889999999999999888875543
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.5e-17 Score=173.23 Aligned_cols=334 Identities=8% Similarity=-0.011 Sum_probs=276.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
...++..+.+.|++++|+.+++...... +-+...+..++.++...|+.++|...++++....|.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3445778889999999999999998764 555666777777888899999999999999988899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|...+++....... +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999999886432 5678888999999999999999999988776433 33333333 3478899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN----ALKLLQKMEED 435 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 435 (546)
+.+.+....++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++ |...+++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 9988765334555556667888999999999999999998653 367788889999999999986 89999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-H
Q 009011 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHST-Y 514 (546)
Q Consensus 436 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 514 (546)
. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|...++++.+.+ |+... +
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 4 445678889999999999999999999999987655 66778889999999999999999999998764 55444 3
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 515 KMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 515 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
..+..++...|+.++|...++..-+...
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3456678899999999999998866543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=2.6e-16 Score=175.10 Aligned_cols=367 Identities=11% Similarity=0.025 Sum_probs=277.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CHHHH---------
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK-DTRAL--------- 235 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~--------- 235 (546)
.+...+...|++++|+..|++..+ . .+.+..++..+...+.+.|++++|++.|++..+..... ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~-~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVR-A-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 345677889999999999999988 4 56788999999999999999999999999998753221 11111
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 236 ---SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 236 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
......+.+.|++++|...|+++....|.+...+..+...+...|++++|++.|++..+.... +...+..+...|.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 223456778999999999999999888888999999999999999999999999999986433 4566666777664
Q ss_pred hcCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 313 REKDFRKVDDTLKEMQEKGCK--------PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
.++.++|..+++.+...... .....+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 56789999888765432100 012235556778889999999999999999875 33677788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------------------------
Q 009011 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED----------------------------- 435 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------------- 435 (546)
|++++|...++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999998875322 3333332323333344444444443332110
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 436 ----------LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 436 ----------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..+.+...+..+...+.+.|+.++|...++++.+..+. +...+..++..|...|++++|.+.++...+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 12345556677888889999999999999999987655 7888999999999999999999999988754
Q ss_pred CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 506 GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 506 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
. +.+..+...+..++...|+.++|.++++.+...
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 2 123455666777888999999999999988654
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=4.4e-18 Score=161.67 Aligned_cols=338 Identities=16% Similarity=0.130 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH-HH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL-SV 237 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~ 237 (546)
.-.++|..+..++-..|++++|+.+++.+.+ . .+...+.|..+..++...|+.+.|.+.|.+..+. .|+.... +.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aie-l-~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIE-L-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHh-c-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3456777777777777788888888777777 3 5556777777777777777777777777776643 3443332 22
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCC----------------------------------CCHHHHHHHHHHHHhcCCHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIP----------------------------------LSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~----------------------------------~~~~~~~~li~~~~~~g~~~ 283 (546)
+...+-..|++++|...+.+.....| .-...|-.|...|...+.++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 22233334555555555544443333 33344444444444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
+|...+.+.....+. ..+.+..+...|...|.++-|+..|++..+.... =...|+.+..++-..|++.+|.+.|.+..
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 554444444433211 2344444445555566666666666666654211 24467777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 009011 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-C 441 (546)
Q Consensus 364 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~ 441 (546)
... +......+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|+.++|+..|++.++- .|+ .
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 653 334556666777777777777777777776653 233 345677777777777777777777777663 555 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY 510 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 510 (546)
..|+.+...|-..|+.+.|.+.+.+.+..++. -....+.|...|-..|++.+|+.-+++... ++||
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 56777777777777888887777777765443 355677777777788888888888887773 4455
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.9e-16 Score=164.01 Aligned_cols=358 Identities=14% Similarity=0.023 Sum_probs=280.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..|..+.. ..|+...|..+..+|.+.|++++|++.++...+ . .+....+|..+..+|...|++++|+.
T Consensus 141 ~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~-l-~p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALE-L-DPDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred CCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 578889999988863 456788999999999999999999999999988 4 66778899999999999999999987
Q ss_pred HHHHhhhCCC----------------------------C-C---CHHHHHHH---------------------------H
Q 009011 219 AFRGMKKYGV----------------------------E-K---DTRALSVL---------------------------M 239 (546)
Q Consensus 219 ~~~~m~~~~~----------------------------~-~---~~~~~~~l---------------------------l 239 (546)
.|......+- . + ........ +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 6654422110 0 0 00000000 0
Q ss_pred HH------HHccCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 240 DT------LVKGNSVEHAYKVFLEFKDC---IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH 310 (546)
Q Consensus 240 ~~------~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 310 (546)
.. ....+++++|.+.|+..... .+.....++.+...+...|++++|...+++..+.... ....|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 00 01225678888999887652 3455677899999999999999999999999886432 46688888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 311 YCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 390 (546)
+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998774 3367788899999999999999999999999875 44677888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHH
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE------TYAPLLKMCCRKKRMKVLNFLL 464 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~ 464 (546)
...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.....+.. .++..+..+...|++++|..++
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999998753 3357888999999999999999999999988753211111 1122222334479999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 465 THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 465 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
++..+.++. +...+..+...+...|++++|.+.|++..+..
T Consensus 532 ~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 532 EKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999887654 55678899999999999999999999988653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=4.9e-16 Score=165.35 Aligned_cols=408 Identities=10% Similarity=0.048 Sum_probs=301.1
Q ss_pred CCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHH
Q 009011 123 VSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATM 200 (546)
Q Consensus 123 ~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 200 (546)
-+.++..|...+... .++.+.|+..+.-+. +.-..+...+..+...+.+.|++++|.++|++..+ . .+.+...+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~--~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~ 86 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYR--VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS-L-EPQNDDYQ 86 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHH
Confidence 345555555555543 356666776666554 22345566789999999999999999999999887 3 56778888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++....|.+...+..+...+...|
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 889999999999999999999998763 55566 8888888999999999999999999888889888888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----
Q 009011 281 KVDDAQKAMKEMFQQGFSPDV------VSYTCFIEHYC-----REKDF---RKVDDTLKEMQEK-GCKPSVI-TYT---- 340 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~a~~l~~~m~~~-g~~p~~~-~~~---- 340 (546)
..++|...++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998887664 2321 11122222222 12234 6788888888854 2223221 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP---NVLTYNTMISSA 416 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~ 416 (546)
..+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456779999999999999887632 332 22335778999999999999999987643211 134556667788
Q ss_pred HhcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 417 CARSEEENALKLLQKMEEDL-----------CKPDC---ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
...|++++|..+++.+.+.. -.|+. ..+..+...+...|+.++|.++++++....+. +...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 89999999999999988752 11231 34556677888999999999999999887655 68889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 483 VRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
...+...|++++|.+.+++..+.. |+ ...+......+...|++++|+.+++.+.+..++
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998654 65 455556666788899999999999998775543
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-16 Score=151.77 Aligned_cols=351 Identities=12% Similarity=0.039 Sum_probs=279.9
Q ss_pred CCCCCHHHHHHHHHhh-----cCChhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC
Q 009011 122 GVSVSNSLVEQTLRRF-----SNDLTPAFGFFTWAKTQTGYMHTPEM-YNTMVDVLGKSKKFCLMWELVKEMDELNNGYV 195 (546)
Q Consensus 122 ~~~~~~~~~~~~l~~~-----~~~~~~a~~~f~~~~~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~ 195 (546)
.+.+++..+...++.. .++...|..-|..+.+ +.|+... -+-+...+-..|++++|..-+.+..+ . .+.
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~-~-qp~ 216 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE-T-QPC 216 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHh-h-CCc
Confidence 4555665555555532 2466667666665542 3343333 23344445557888888888887776 2 444
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
-...|+.|...+-.+|+...|++-|++..+.. +.=...|..|...|...+.++.|...+.+....-|....++..+...
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACI 295 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEE
Confidence 56678889999999999999999999998653 33367899999999999999999999999887778888999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
|...|+++-|.+.+++.++..+. =...|+.|..++-..|+..+|.+.|....... +.-....+.+...+...|.+++|
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 99999999999999999987432 36789999999999999999999999998863 33456788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
..+|....+.. +.-....+.|...|-+.|++++|...+++.... .|+ ...|+.+...|-..|+.+.|...+.+.+.
T Consensus 374 ~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 374 TRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999998864 334567889999999999999999999999864 565 45799999999999999999999999988
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 435 DLCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 435 ~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
.+ |. ...++.|...|-..|++.+|+.-++...+..+. -...|..++.++
T Consensus 451 ~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 451 IN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred cC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 63 44 578899999999999999999999999986554 234455555444
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.3e-14 Score=132.52 Aligned_cols=412 Identities=16% Similarity=0.169 Sum_probs=291.2
Q ss_pred cCCChHHHHHHHhcCCCCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHcCCChHHHHHH
Q 009011 107 QYQSPDKVVEALKGCGVSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGY-MHTPEMYNTMVDVLGKSKKFCLMWEL 183 (546)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~l 183 (546)
...+.--+.+.|++.|+++++..-..+++.. .++.+.-+.-..|...-..+ ..+..+| +.|.+.+ -+
T Consensus 130 EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd--L~ 199 (625)
T KOG4422|consen 130 EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD--LL 199 (625)
T ss_pred ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH--HH
Confidence 3334445678899999999999888888753 23333333334444322222 2233344 4454433 23
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CC
Q 009011 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CI 262 (546)
Q Consensus 184 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~ 262 (546)
|+ . .+.+..++.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-.-+ .+++.+|.. .+
T Consensus 200 ~E-~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 200 FE-T-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred Hh-h-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 33 2 4566889999999999999999999999999877778999999999887543322 567777766 68
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHH----cCCC
Q 009011 263 PLSSQIFNILIHGWCKTRKVDD----AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK-VDDTLKEMQE----KGCK 333 (546)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~----~g~~ 333 (546)
.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 8999999999999999998875 45678889999999999999999999999988755 4444444443 2222
Q ss_pred C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 334 P----SVITYTIVMHALGKAKQINEALKVYEKMKSDD----CLPD---TSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 334 p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
| |...|...|..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 55667788899999999999999877665321 1222 33466777888889999999999999988777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------H----H-HHHHH----
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK-RM--------K----V-LNFLL---- 464 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~--------~----~-a~~~~---- 464 (546)
.|+..+...++++....|.++-.-+++.+++..|-.-+...-.-++..+++.+ .. . + |..++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999988875444444444444455433 11 0 1 11111
Q ss_pred ---HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHH---HHHHHHHhcChhhHHHHHHHHH
Q 009011 465 ---THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG-IVPYHSTYK---MLEEKLEKKRLGNAKERINKLL 537 (546)
Q Consensus 465 ---~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~---~l~~~~~~~g~~~~a~~~~~~m 537 (546)
.+|. .........+...-.+.+.|+.++|.++|.-...++ -.|-....+ .+++.-...+....|..+++.+
T Consensus 510 ~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1222 234456677888888999999999999999986654 233344444 4455556677888888888877
Q ss_pred HHH
Q 009011 538 AHA 540 (546)
Q Consensus 538 ~~~ 540 (546)
...
T Consensus 588 ~~~ 590 (625)
T KOG4422|consen 588 SAF 590 (625)
T ss_pred HHc
Confidence 543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.6e-14 Score=148.46 Aligned_cols=393 Identities=11% Similarity=0.038 Sum_probs=278.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
+....|+..+..+. ............+...+...|++++|+++|+++.+ . .+.+...+..++..+.+.++.++|++
T Consensus 82 G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~-~-dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 82 GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLK-K-DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 56667777777665 11122233333345678888888888888888887 3 56667777788888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.++++.+. .|+...+..++..+...++..+|.+.++++.+..|.+...+..++..+.+.|-...|.++..+-... +.
T Consensus 158 ~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~ 234 (822)
T PRK14574 158 QATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS 234 (822)
T ss_pred HHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC
Confidence 88888764 5555555445444444566656888888888878888888888888888888888887766654321 11
Q ss_pred CCHHHH------HHHHHHH-----HhcCCh---hHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHH
Q 009011 299 PDVVSY------TCFIEHY-----CREKDF---RKVDDTLKEMQEK-GCKPSV-I----TYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 299 ~~~~~~------~~li~~~-----~~~g~~---~~a~~l~~~m~~~-g~~p~~-~----~~~~li~~~~~~g~~~~a~~~ 358 (546)
+...-+ ..+++.- ....++ +.|+.-++.+... +..|.. . ...-.+-++...|++.++++.
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~ 314 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111001 1111110 011222 3444555555442 222322 1 222445678889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 359 YEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG-----VVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
|+.+...+.+....+-.++.++|...+++++|..++..+.... ..++......|.-++...+++++|..+++++.
T Consensus 315 y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 315 YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999998876567788999999999999999999999987643 12344446788999999999999999999998
Q ss_pred HCCC-----------CCC--H-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009011 434 EDLC-----------KPD--C-ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFF 499 (546)
Q Consensus 434 ~~~~-----------~p~--~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 499 (546)
+... .|+ - ..+..++..+...|++.+|++.++++....+. |......+...+...|++.+|.+.+
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7311 122 2 23455677788999999999999999887766 8999999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 500 EEMISKGIVPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 500 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
+..... .|+ ..+......++...|++++|+++.+.+....
T Consensus 474 k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 474 KAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 777644 454 4556677778888899999999987775443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=2.2e-15 Score=160.37 Aligned_cols=378 Identities=11% Similarity=0.030 Sum_probs=286.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
....++....-.+.+....|+.++|++++.+... . .+.+...+..+...+.+.|++++|.++|++..+.. +.+....
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~-~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV-H-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3345556666778889999999999999999986 3 56677789999999999999999999999988753 5567777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..+..++...|+.++|...++++....|.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...|
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88888999999999999999999888888888 999999999999999999999999987554 5666667788888899
Q ss_pred ChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----H
Q 009011 316 DFRKVDDTLKEMQEKGCKPSV------ITYTIVMHALG-----KAKQI---NEALKVYEKMKSD-DCLPDTS-FY----S 375 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~ 375 (546)
..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ .
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998876553 2221 01112222221 12234 7788888888854 1123221 11 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 009011 376 SLIFILSKAGRVKDANEIFEDMKKQGVV-PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP---DCETYAPLLKMC 451 (546)
Q Consensus 376 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~ 451 (546)
..+..+...|++++|...|+.+.+.+.. |+. .-..+..+|...|++++|...|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456779999999999999987532 332 12224678999999999999999987653111 134566677788
Q ss_pred HhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 452 CRKKRMKVLNFLLTHMFKNDV-----------SMD---AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 517 (546)
...|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|.++++++.... +-+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987532 123 2355677788899999999999999998763 3446677888
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 518 EEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 518 ~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
...+...|+.++|++.++...+..+.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 88999999999999999998776543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=4e-13 Score=140.68 Aligned_cols=403 Identities=13% Similarity=0.058 Sum_probs=286.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 009011 129 LVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTP--EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR 206 (546)
Q Consensus 129 ~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~ 206 (546)
-...++..-.++...|+..|..+... .|+. .++ .++..++..|+.++|+..+++... . .+........+...
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p-~n~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-S-MNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-C-CCCCHHHHHHHHHH
Confidence 33444444456778888888888632 2332 234 888888899999999999998873 2 45566666666778
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
+...|++++|+++|+++.+.. +.+...+..++..+...++.++|.+.++++....|. ...+..++..+...++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHH
Confidence 889999999999999998764 455677777788888999999999999988775554 444455555554566666699
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH------HHHHHHH---H--hcCC---H
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY------TIVMHAL---G--KAKQ---I 352 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~------~~li~~~---~--~~g~---~ 352 (546)
+.++++.+..+. +...+..++.++.+.|-...|.++..+-... +.+...-+ ...++.- . ...+ .
T Consensus 190 ~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 190 QASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999988543 6777788888899999999888777653322 11111111 0111100 0 1112 3
Q ss_pred HHHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 353 NEALKVYEKMKSD-DCLPD-TS----FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426 (546)
Q Consensus 353 ~~a~~~~~~~~~~-~~~~~-~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 426 (546)
+.|+.-++.+... +..|. .. +..-.+-++...|++.++.+.|+.+...+.+.-..+-..+..+|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4455555555542 11132 12 223445677889999999999999998775544457788899999999999999
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHH
Q 009011 427 KLLQKMEEDL-----CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV-------------SMDAG-TYASLVRGLI 487 (546)
Q Consensus 427 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------------~~~~~-~~~~li~~~~ 487 (546)
.+++.+.... ..++......|.-++...+++++|..+++.+.+..+ .||-. .+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999997643 123444457889999999999999999999988322 22322 3345577788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 488 ESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
-.|+..+|.+.++++.... +-|......+...+...|....|++.++......+
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 9999999999999998663 44677888889999999999999999988766543
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.5e-13 Score=123.40 Aligned_cols=372 Identities=17% Similarity=0.219 Sum_probs=268.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--ChH-HHHHHHHHhhhCC------------
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG--RYD-DAVEAFRGMKKYG------------ 227 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~-~A~~~~~~m~~~~------------ 227 (546)
+-|.|+.+. ..|.+.++.-+|+.|.+.+ .+.+...-..+++.-+-.+ ++. .-.+.|-.|.+.|
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 445555544 4567777777888887766 6777666555554332211 111 1122233332211
Q ss_pred -------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 228 -------VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 228 -------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
.+.+..++..+|.++|+-...+.|.+++++... ....+..+||.+|.+-.-... .+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 256678999999999999999999999988766 577889999999877554333 78899999999999
Q ss_pred CHHHHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC----CC---
Q 009011 300 DVVSYTCFIEHYCREKDFRK----VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE-ALKVYEKMKSD----DC--- 367 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~----~~--- 367 (546)
|..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +..++.++... .+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998765 56788899999999999999999999998887744 55555555432 22
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 368 -LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ----GVVPNV---LTYNTMISSACARSEEENALKLLQKMEEDLCKP 439 (546)
Q Consensus 368 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 439 (546)
+.|...|...+..|.+..+.+-|.++-.-+... -+.|+. .-|..+....|+....+.-...|+.|.-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 236677888888888999999898887665431 122332 235667778888889999999999998887889
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-Ch--------HH-----HHHHH------
Q 009011 440 DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESG-KL--------EL-----ACSFF------ 499 (546)
Q Consensus 440 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~~------ 499 (546)
+..+...++++....+.++-.-++|.++...|...+...-.-++..+++.. .. .. |..++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999886656666666666666544 11 10 11111
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 500 -EEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 500 -~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.+|.... -.....+.+.-.+.+.|..++|-+++..+.+.+.
T Consensus 512 ~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 512 PIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 2233223 3445667777778999999999999999865443
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=8.5e-12 Score=133.55 Aligned_cols=350 Identities=11% Similarity=-0.001 Sum_probs=251.0
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-C-CCCCHHHHHHHHHHHHccCC---HH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-G-VEKDTRALSVLMDTLVKGNS---VE 249 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~ll~~~~~~g~---~~ 249 (546)
+...++.+.++.|.+. .+-+.....-+.-...+.|+.++|.++|+..... + ...+......++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 5555666666666652 3445555555566677889999999999988652 1 12344455577777776655 22
Q ss_pred HHHH----------------------HHHHh---hcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 250 HAYK----------------------VFLEF---KDCIPL--SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV 302 (546)
Q Consensus 250 ~a~~----------------------~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 302 (546)
++.. .+..+ ....|. +...|..+..++.. ++.++|...+.+..... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 2222 22222 223355 77888888888887 78888999888877653 5544
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 382 (546)
....+...+...|++++|...++++... .|+...+..+..++.+.|+.++|...+++..+.+ +.+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4333444556899999999999987654 3444456667788889999999999999998865 334444444444555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 462 (546)
+.|++++|...+++..+. .|+...|..+..++.+.|+.++|...+++..+.. +.+...+..+..++...|+.++|..
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999875 4678888899999999999999999999998874 4456777788888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 463 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.++...+..+. +...+..+..++...|++++|...+++..+.. |+. .+....-....+..+++.+.+-+++..
T Consensus 665 ~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 665 MLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999987665 77889999999999999999999999998654 544 333344444555555666666555443
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=7.9e-12 Score=133.79 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=149.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIF 394 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 394 (546)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4444555555544443 244433333344445777788887777776544 333444555666777788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
++..+... .+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++..+..+.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd- 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN- 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 87776541 12223333333444558888888888888775 467778888888888888888888888888887655
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
+...++.+..++...|++++|...+++..+.. +-+...+..+..++...|+.++|+..++..-+...
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 67778888888888888888888888888653 23456677778888888888888888887765543
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=3e-12 Score=128.01 Aligned_cols=365 Identities=13% Similarity=0.056 Sum_probs=279.5
Q ss_pred HHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHH
Q 009011 170 VLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVE 249 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 249 (546)
.+...|++++|.+++.++.+ . .+.....|.+|...|-+.|+.+++...+-...-.. +.|...|..+.+...+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIk-q-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIK-Q-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHH-h-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 34445999999999999988 4 78889999999999999999999988776554433 667788999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHH
Q 009011 250 HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT----CFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~a~~l~~ 325 (546)
.|.-.|.+..+..|++...+---+..|-+.|+...|.+-|.++....+..|..-+. .++..+...++.+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988888888888888899999999999999999998875533433333 34556777788889998888
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------------------------CCCHHHHHHH
Q 009011 326 EMQEK-GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC---------------------------LPDTSFYSSL 377 (546)
Q Consensus 326 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l 377 (546)
..... +-..+...++.++..+.+...++.|......+..... .++..+. .+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87763 2333555778888889999999998888877765211 1222231 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQG--VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK 455 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 455 (546)
+-++......+....+.....+.. +.-+...|.-+..++...|++.+|+.+|..+......-+...|..+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 334445555555555555555555 333556788899999999999999999999988766666788999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcChh
Q 009011 456 RMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI--------SKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
..+.|.+.++......+. +...--.|...+-+.|+.++|.+.++.+. ..+..|+..........+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999986554 56666777888899999999999999854 223556666666667778888888
Q ss_pred hHHHHHHHHHHH
Q 009011 528 NAKERINKLLAH 539 (546)
Q Consensus 528 ~~a~~~~~~m~~ 539 (546)
|+-.....+|-.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 886666555543
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.5e-12 Score=128.04 Aligned_cols=282 Identities=10% Similarity=0.066 Sum_probs=167.2
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHccCCHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLAT-MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS--VLMDTLVKGNSVEH 250 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~ 250 (546)
.|+++.|.+.+....+.. .++.. |........+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 588888887777665521 22233 333344447788888888888888653 45543332 33556777888888
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV-------VSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~l 323 (546)
|...++++.+..|.+..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888887777778888888888888888888888888888876544222 1222223333333344444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
++.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..+...+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P- 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG- 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-
Confidence 4444332 2334555556666666666666666666666553 3333211 22223344666666666666655432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 468 (546)
-|...+.++...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|..++++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 24445555666666666666666666666653 4666666666666666666666666665543
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.2e-12 Score=125.69 Aligned_cols=283 Identities=10% Similarity=0.047 Sum_probs=156.1
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRA-LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIF-NILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~ 287 (546)
.|+++.|.+.+....+.. +++.. |.....+..+.|+.+.|.+.+.++.+..|.+.... ......+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 467777776666554321 11222 22223334566777777777766655333332221 223556666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV-------ITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777666543 4556666666777777777777777777766544222 122222333333344445555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 440 (546)
.+.+. .+.+......+...+...|+.++|.+++++..+. .++... .++.+.+..++.+++.+..+...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 54332 1335556666666666666666666666666553 233321 12233334466666666666665542 333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 441 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
...+..+...|.+.+++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666666666666666666653 3556666666666666666666666666543
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=5.2e-12 Score=124.94 Aligned_cols=289 Identities=10% Similarity=0.051 Sum_probs=128.4
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHccCCHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT--RALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a 251 (546)
.|+++.|.+.+....+. .+.....+-.......+.|+++.|.+.|.+..+.. |+. .........+...|+.+.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45566666655555441 11122223333444555555666665555554321 222 1222234444555555555
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT-CFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
...++.+.+..|.+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..++
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 55555555555555555555555555555555555555555555432 111111 000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC---LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL 407 (546)
Q Consensus 331 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 407 (546)
......+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||..
T Consensus 233 -------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~ 297 (409)
T TIGR00540 233 -------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDR 297 (409)
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcc
Confidence 000111111111222222222210 1244455555555555555555555555555432 2221
Q ss_pred H---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 408 T---YNTMISSACARSEEENALKLLQKMEEDLCKPDC--ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 408 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
. ...........++.+.+.+.++...+.. +-|. .....+...|.+.|++++|.+.|+........|+...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1 0111111222345555555555554431 1122 33345555555666666666666543333334555555556
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m 502 (546)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666554
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.2e-12 Score=127.59 Aligned_cols=291 Identities=9% Similarity=-0.002 Sum_probs=203.7
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 322 (546)
...|+++.|.+.+.+..+..+.....+-.....+.+.|+.+.|.+.+.+..+....++....-.....+...|++++|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 35678888888877665544444455555667777788888888888887665333232333334667777888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL---SKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~ 399 (546)
.++.+.+... -+...+..+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888887752 256677788888888888888888888888876442222211111111 222333333445555544
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009011 400 QGV---VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET---YAPLLKMCCRKKRMKVLNFLLTHMFKNDVS 473 (546)
Q Consensus 400 ~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (546)
... +.+...+..+...+...|+.++|.+.+++..+.. ||... .....-.....++.+.+.+.++...+..+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 321 1378888999999999999999999999998863 44432 111122234457888899999888876444
Q ss_pred CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 009011 474 MDA--GTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLL 537 (546)
Q Consensus 474 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 537 (546)
|. ....++...+.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++-
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45 6778899999999999999999996444456799999999999999999999999999874
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.5e-11 Score=122.39 Aligned_cols=399 Identities=11% Similarity=0.069 Sum_probs=239.4
Q ss_pred CChhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMH-TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV 217 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 217 (546)
.+...+..+..++....-..+ -...|-.+..+|-..|+++.|...|.+..+.. .....-.+..+.+.+.+.|+.+.+.
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCCccccccchhHHHHHhchHHHHH
Confidence 345555555555543221111 12345667777777777777777777766632 1112444556677777777777777
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 009011 218 EAFRGMKKYGVEKDTRALSVLMDTLVKGN----SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM- 292 (546)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 292 (546)
..|+...+.. +.+..+...|...|...+ ..+.|..++.+.....+.|...|-.+...|....-+.. +.+|...
T Consensus 363 ~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~ 440 (1018)
T KOG2002|consen 363 FCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNAL 440 (1018)
T ss_pred HHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHH
Confidence 7777776642 445556666666666554 44556666655555566677777666666655444333 5554443
Q ss_pred ---HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 293 ---FQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK---GCKPSV------ITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 293 ---~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
...+..+.....|.+...+...|++++|...|...... ...+|. .+--.+...+-..++.+.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 33444466777777777777788888888887776654 112222 112223344444555666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------------------------------CCCCC
Q 009011 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ-----------------------------------GVVPN 405 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------------------------~~~p~ 405 (546)
.+.+.. +-=+..|--+..+....+...+|...+++..+. ...+|
T Consensus 521 ~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 521 SILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 555432 111122222222222223444444444443321 11133
Q ss_pred HHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009011 406 VLTYNTMISSACA------------RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS 473 (546)
Q Consensus 406 ~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (546)
..+.-+|.+.|.+ .+..++|+++|.+..+.. +-|...-+-+.-.++..|+++.|..+|....+....
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 3333334443322 234577888888887764 445566667777788899999999999999886542
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 474 MDAGTYASLVRGLIESGKLELACSFFEEMISK-GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 474 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
+..+|-.+.++|..+|++..|++.|+....+ +-.-+..+...|.+++...|++.++.+...........
T Consensus 679 -~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 679 -FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred -CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 4567888899999999999999999987765 43456777888899999999988888877666554433
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=9.8e-11 Score=107.15 Aligned_cols=329 Identities=15% Similarity=0.125 Sum_probs=173.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 009011 130 VEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGK--SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRL 207 (546)
Q Consensus 130 ~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~--~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~ 207 (546)
+..+++.+.+.+..+..+|..-+.. ..-..+.+++.+ .|+|..|.++..+-.+ . .......|..-.++-
T Consensus 58 l~~~l~~v~~~~~~~~~w~~~rKrr-------ra~~~~~egl~~l~eG~~~qAEkl~~rnae-~-~e~p~l~~l~aA~AA 128 (400)
T COG3071 58 LEWLLRRVLRTPAHTRGWFSRRKRR-------RARKALNEGLLKLFEGDFQQAEKLLRRNAE-H-GEQPVLAYLLAAEAA 128 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCcHHHHHHHHHHhhh-c-CcchHHHHHHHHHHH
Confidence 3344444444454554444433211 111333444433 4677777777766554 2 333444555556666
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 208 VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
-+.|+.+.+-.++.+..+..-.++...+..........|+.+.|..-+.++.+.-|.+..+.....++|.+.|++.+...
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence 66677777777776666542244445555555566666666666666666665556666666666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 367 (546)
++..|.+.|.--|... ..+ ...+|..+++-....+..+.-...++..... .
T Consensus 209 ~l~~L~ka~~l~~~e~---------------------~~l-------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-l 259 (400)
T COG3071 209 ILPKLRKAGLLSDEEA---------------------ARL-------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-L 259 (400)
T ss_pred HHHHHHHccCCChHHH---------------------HHH-------HHHHHHHHHHHHhccccchHHHHHHHhccHH-h
Confidence 6666666654322210 000 1124444555444444444444444444332 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
.-++..-.+++.-+.++|+.++|.++.++..+++..|. -...-.+.+-++.+.-.+..++-.+.. +-++..+..|
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tL 334 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTL 334 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHH
Confidence 22344445555556666666666666666655554444 111222344455555555554443331 2233455556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 448 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66666666666666666654443 3556666666666666666666666666554
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.4e-14 Score=136.05 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
.++.+.|.+.++++....+.+...+..++.. ...+++++|.++++...+.. ++...+..++..+...++++++.+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444333222233333333333 34444444444443332221 22233333334444444444444444
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 325 KEMQEKG-CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 325 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
+.+.... .+.+...|..+...+.+.|+.++|++.+++..+.. +.|..+.+.++..+...|+.+++.++++...+.. +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 4433221 12233333344444444444444444444444332 1123334444444444444444444443333321 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT 465 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 465 (546)
.|...+..+..++...|+.++|+.++++..+.. +.|......+..++...|+.++|..+.+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 222333344444444444444444444443321 2233333344444444444444444333
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=2.3e-14 Score=134.60 Aligned_cols=259 Identities=14% Similarity=0.113 Sum_probs=84.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKD-C-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
+...+.+.|++++|.++++.... . .+.+...|..+...+...++.++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34555666777777776644332 2 2444555555666666677777777777777665433 34445555555 5667
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD-CLPDTSFYSSLIFILSKAGRVKDANEIF 394 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 394 (546)
++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777666654432 344455566666677777777777777665432 2345666666666777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
++..+.... |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+..+.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 777654311 45556666666666777777666666665542 334445566666666777777777777776664433
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
|......+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666666677777777777766665543
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1e-10 Score=118.04 Aligned_cols=387 Identities=15% Similarity=0.145 Sum_probs=273.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009011 143 PAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-NGYVSLATMSTIMRRLVRGGRYDDAVEAFR 221 (546)
Q Consensus 143 ~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (546)
.++..+.-+. .-...++.+.+.|...|.-.|++..++.+...+.... ....-...|..+.++|-..|++++|...|.
T Consensus 254 ~~~~ll~~ay--~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 254 KGVQLLQRAY--KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHH--hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3455555554 3345677788889999999999999999999887732 012335568889999999999999999998
Q ss_pred HhhhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHC
Q 009011 222 GMKKYGVEKDTR--ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR----KVDDAQKAMKEMFQQ 295 (546)
Q Consensus 222 ~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~ 295 (546)
+..+. .+|.. .+.-+...+.+.|+++.+...|+.+....|.+..+...|...|...+ ..+.|..++.+..+.
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 88764 44443 44567788999999999999999999989999999999999998886 556777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 009011 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM----QEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD---DCL 368 (546)
Q Consensus 296 g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~ 368 (546)
-+ .|...|-.+...+-. ++...++.+|... ...+..+.....|.+.......|++++|...|...... ...
T Consensus 410 ~~-~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 TP-VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cc-ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 43 367777776666554 4444446666544 45566677889999999999999999999999988654 122
Q ss_pred CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C---
Q 009011 369 PDT------SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL-TYNTMISSACARSEEENALKLLQKMEEDL-C--- 437 (546)
Q Consensus 369 ~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~--- 437 (546)
+|. .+-..+..++-..++.+.|.++|..+.+.. |+-+ .|.-+.......+...+|...+.+....+ -
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 333 223345666677789999999999998753 3322 33333322223355566666665554321 1
Q ss_pred -------------------------------CCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCC
Q 009011 438 -------------------------------KPDCETYAPLLKMCCR------------KKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 438 -------------------------------~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~m~~~~~~~ 474 (546)
.+|......|.+.|.. .+..++|.++|.++.+..+.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk- 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK- 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 1232333333333321 33467788888888887666
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
|...-|.+.-.++..|++.+|..+|.+..+... -...+|-.+..+|...|++-.|.++++...+
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888889999999999998887743 2344677788888888999888888877643
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.9e-11 Score=108.37 Aligned_cols=288 Identities=13% Similarity=0.137 Sum_probs=166.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--CCC--CHHHHHHHHHHHHhcCCHHHHH
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC--IPL--SSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~a~ 286 (546)
.+.++|+++|-+|.+.. +-+..+-.+|.+.+-+.|.++.|..+++.+.+. .+. .......|.+-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45666666666665532 333344455566666666666666666665442 111 1223455666677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV----ITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
.+|..+.+.|.- -......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 777777654321 2345556677777777777777777766665544322 23444445555566777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 363 KSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 442 (546)
.+.+ +..+.+--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.. +...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 6654 223444445566667777777777777777766433334556667777777777777777777776653 2333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHC
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE---SGKLELACSFFEEMISK 505 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 505 (546)
.-..+..........+.|..++.+-... +|+...+..+|..-.. .|...+-...++.|+..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333333333444445555544444433 4666666666665532 34456666666666644
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=4.1e-11 Score=106.33 Aligned_cols=289 Identities=14% Similarity=0.088 Sum_probs=218.1
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHccCCHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK---DTRALSVLMDTLVKGNSVEH 250 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 250 (546)
+.+.++|.++|-+|.+ . .+.+..+.-++...|.+.|..+.|+.+.+.+.+..--+ ...+...|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~-~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ-E-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh-c-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4678899999999998 5 77788888899999999999999999999987642111 12344566777889999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV----VSYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
|+++|..+.+....-......|+..|-...+|++|.++-+++...+..+.. .-|.-+...+....+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887754455667888999999999999999999999887655432 2455555666667889999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+... ..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 8877433 34444456778889999999999999999987555567788899999999999999999999887543 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR---KKRMKVLNFLLTHMFK 469 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~ 469 (546)
..-..+-..-......+.|..++.+-... +|+...+..++..... .|...+-..+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33444444444445566666666655554 7999999999987654 3345555566666654
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=2.3e-09 Score=103.82 Aligned_cols=410 Identities=12% Similarity=0.062 Sum_probs=305.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 009011 115 VEALKGCGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYM--HTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL 190 (546)
Q Consensus 115 ~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 190 (546)
+..|...|+.++.+.+..=-..|.. ...-+..+..-.. --|.. --..+|..-...|.+.+.++-|+.+|....+
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi-gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq- 544 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI-GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ- 544 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH-hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-
Confidence 3445566788888777766666632 2222333333322 12221 2235788888889999999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHH
Q 009011 191 NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFN 270 (546)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 270 (546)
- .+.....|...+..--..|..+....+|++.... ++.....+......+-..|++..|..++....+..|.+..+|.
T Consensus 545 v-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 545 V-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred h-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 3 6667788877777777788899999999998875 3555555666666777789999999999988887888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 350 (546)
+-+..-.....++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+. ++.-...|..+.+.+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHH
Confidence 9999999999999999999988775 456666766666666678899999999888876 2323446677778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
+++.|.+.|..-.+. ++-.+..|-.+...=-+.|.+-+|..+++...-++.+ +...|...|+.-.+.|..+.|..++.
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998888765543 3456667777777778888999999999998876644 77889999999999999999999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009011 431 KMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY 510 (546)
Q Consensus 431 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 510 (546)
+..+. ++-+...|..-|....+.++-......+++ +.-|..+.-.+...+....+++.|.+.|.+.+..+ ||
T Consensus 778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d 849 (913)
T KOG0495|consen 778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PD 849 (913)
T ss_pred HHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--Cc
Confidence 88775 455666777777666666664444433332 23466777778888888899999999999998654 44
Q ss_pred -HHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 511 -HSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 511 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
-.+|..+...+...|..+.-.+++++..+..
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3566677777888888888888888776543
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=6.9e-11 Score=109.28 Aligned_cols=150 Identities=9% Similarity=0.019 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
+...+...|-...+..+|.+++.+... -++.|+.....|...|-+.|+-.+|.+++-+--.. ++.+..|..-|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 333333444444444444444433322 12234444555555555555555555544332222 2334445554555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChh
Q 009011 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL-IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
...-++++..+|++.. -+.|+..-|..||..| -+.|++.+|.+++++...+ ++-|......+++.+...|..
T Consensus 638 dtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred hhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 5555555666655443 2466777777766554 3567777777777776554 455566666666666555543
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.5e-12 Score=122.97 Aligned_cols=283 Identities=13% Similarity=0.062 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCCHH-HHHH
Q 009011 212 RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI---PLSSQIFNILIHGWCKTRKVD-DAQK 287 (546)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~-~a~~ 287 (546)
+..+|+..|..+.+. +..+..+...+..+|...+++++|+++|+.+++.. -.+..+|.+.+-.+-+.-.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345555555553332 23333444555555555666666666665554421 123444544443322211110 1111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 367 (546)
+.+... -...+|.++-++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+....++|.|...|+......
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 111111 13455666666666666666666666555544211 44555555555555556666666665554432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
+-+-.+|.-+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|+++++++...+ +-|+..--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 112223333444555666666666666655543321 33444444555555566666666666655543 2222222223
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 448 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
...+...++.++|...++++++.-+. +..+|..+...|.+.|+.+.|+.-|.-|.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33444555666666666666554332 4445555556666666666666666555544
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.7e-10 Score=105.93 Aligned_cols=332 Identities=12% Similarity=0.039 Sum_probs=203.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 155 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
.+...|...+-...-++-+.|....|++.|.+... . .|-.|.+|..|...... ++....... |.+.|..-
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~-~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~ 227 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-R-YPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHW 227 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-c-CCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchH
Confidence 34455666666666777788999999999988876 3 67788888766654421 222222221 22222111
Q ss_pred H--HHHHHHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 009011 235 L--SVLMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF--SPDVVSYTCFIE 309 (546)
Q Consensus 235 ~--~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~ 309 (546)
+ -.+..++-...+.+++.+-.+...+ +++.+...-+....+.-...++++|+.+|+++.+..+ --|..+|..++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1 2334455555667777666666555 5777776666667777777888888888888887632 115666766543
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
.+..+-. +.++.+-.-.-.+--+.|+.++.+-|+-.++.++|...|+...+.+ +-...+|+.+.+-|....+...
T Consensus 308 --v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 --VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred --HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 2222211 1111111111011123456666666777777777777777777665 3345666666677777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 390 ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 390 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|.+-++...+-. +.|-..|-.+.++|.-.+.+.=|+-+|++..+.. +-|...|.+|..+|.+.++.++|++-|.....
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 777777776543 2366677777777777777777777777766642 44566677777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|-. +...+..+...|-+.++.++|...|++.++
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5433 456677777777777777777776666554
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=1.6e-10 Score=115.93 Aligned_cols=327 Identities=16% Similarity=0.106 Sum_probs=254.4
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
..-.|+.++|.+++.+..+.. +.....|..|...|-..|+.+++...+-......|.|...|..+.....+.|.++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999998875 7788899999999999999999999888777778889999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVI----TYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
-.|.+.++..+. +...+---+..|-+.|+...|.+-|.++.....+.|.. ....+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999987543 45555555678899999999999999999874322322 2334566677788889999998887
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------------------CHHHHHHHHH
Q 009011 363 KSDD-CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP---------------------------NVLTYNTMIS 414 (546)
Q Consensus 363 ~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---------------------------~~~~~~~li~ 414 (546)
...+ -..+...++.++..|.+...++.|......+......+ +... --++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 7632 23456678888999999999999998888877622222 2222 12223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 415 SACARSEEENALKLLQKMEEDLCKP--DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
++...+..+....+.....+.++.| +...|.-+..++...|++.+|..++..+......-+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3444445555555555566665333 45678889999999999999999999999976666788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 493 ELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 493 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
++|.+.++..+.. .|+. ..-..|...+.+.|+.|+|.+.+..+.
T Consensus 466 e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999865 3543 344466777888999999998887753
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4e-12 Score=123.28 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=227.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF--SPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
-+..+|...|..+.........+...+..+|...+++++|+++|+.+.+... .-+...|.+.+-.+-+.= ++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 3457888999887777777778889999999999999999999999987631 126778887765543321 2222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 324 L-KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 324 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+ +++.+. .+-.+.+|.++..+|.-.++.+.|++.|++..+.+ +-..++|+.+..-+.....+|+|...|+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 2 223332 23367899999999999999999999999999875 23788999999999999999999999999885
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 009011 403 VPNVLTYN---TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY 479 (546)
Q Consensus 403 ~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 479 (546)
.|...|| -+...|.+.++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.|+|+.+++++...+.+ |.-.-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 4555555 46778999999999999999998875 445677778888899999999999999999998777 55555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHHHHhhhc
Q 009011 480 ASLVRGLIESGKLELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLAHAKEQK 544 (546)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 544 (546)
-..+..+...+++++|+..++++++. .|+. ..|..+...|.+-|+.+.|..=|..+...+.++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 56677888899999999999999854 4655 556677888999999999998888887766554
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=4.3e-10 Score=103.01 Aligned_cols=285 Identities=11% Similarity=0.086 Sum_probs=198.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
.|++..|++...+-.+..+.....|..-+.+.-..|+.+.+-.++.+..+.-..++...+-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35566666655554443333444455555555566666666666666665533444555555556666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD-------TSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 325 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
+++.+.+.. +.........+|.+.|++.....++..+.+.+.-.+ ..+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 666665433 445566666667777777777777777666664433 245666776666666666666677766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG 477 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (546)
.. ..+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ .. .+-.+.+.++.+.-.+..+.-.+.... +..
T Consensus 256 pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 256 PR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred cH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 54 2234666777888889999999999999999998876665 22 223567788888888888877764433 558
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.+.++...|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+.++|.++.++-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 899999999999999999999998875 45999999999999999999999999887654
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.2e-09 Score=101.32 Aligned_cols=259 Identities=12% Similarity=0.076 Sum_probs=194.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR--EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
-+.+.|+++.|.++++-+.+..-+.-...-+.|-..+.- ..++..|.++-+...... .-+....+.-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 477899999999999988876333222333333322222 456888888777766542 22333333334445568999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 353 NEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
++|.+.|++....+.......||. .-.+-..|++++|++.|-++...- ..+......+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988754444444543 335678899999999998876421 236777778888899999999999999776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 433 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
... ++.|+...+.|...|-+.|+-..|.+.+-+-.+. +..+..+...|..-|....-+++|+.+|++.. -+.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH
Confidence 654 5677889999999999999999998887665554 44588899999999999999999999999876 5789999
Q ss_pred HHHHHHHHH-HhcChhhHHHHHHHHHHHH
Q 009011 513 TYKMLEEKL-EKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 513 ~~~~l~~~~-~~~g~~~~a~~~~~~m~~~ 540 (546)
-|..++..| .+.|.++.|.++++.+.+.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999887655 6689999999999988654
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2.4e-08 Score=93.43 Aligned_cols=356 Identities=10% Similarity=0.030 Sum_probs=213.4
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYK 253 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 253 (546)
.|++..|.++|+.-.+ ..|+..+|++.|..-.+.+..+.|..+|++..- +.|+..+|..-...=.+.|++..+..
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 3444444444444443 334444444444444444444444444444432 23444444444444444444444444
Q ss_pred HHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHH------
Q 009011 254 VFLEFKDCIPLS---SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDT------ 323 (546)
Q Consensus 254 ~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l------ 323 (546)
+|+...+.+..+ ...+.+....=..+..++.|.-+|+-.++.=++- ....|..+...=-+-|+.....+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 444433322111 1223333333333444444444444444331110 022222222222233443333332
Q ss_pred --HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHH---HHHHHHhcCCHHHHH
Q 009011 324 --LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT-------SFYSS---LIFILSKAGRVKDAN 391 (546)
Q Consensus 324 --~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~---li~~~~~~g~~~~A~ 391 (546)
++.+.+. .+-|-.+|-..+..-...|+.+...++|+..... ++|-. .+|-- .+..=....+++.+.
T Consensus 309 ~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2223333 2336667777777778889999999999998865 34421 12211 111123467888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009011 392 EIFEDMKKQGVVPNVLTYNTMI----SSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHM 467 (546)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 467 (546)
++++...+ -++....||..+- .--.++.+...|.+++...+ |.-|-..+|...|..-.+.+++|.+..++++.
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99998887 2333445554443 33346788999999998776 45788899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 468 FKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG-IVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 468 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.+.++. +..+|......-...|+.+.|..+|+-+++.. +......|.+.|+.=...|.++.+..+++.+-+.
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 998877 88899998888889999999999999998763 3334556777777778889999999999887654
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=1.8e-11 Score=121.96 Aligned_cols=250 Identities=17% Similarity=0.210 Sum_probs=171.3
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 297 (546)
++-.+...|+.|+..||..++.-||..|+++.|- +|.-|.- ..|.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666778888888888888888888888777 7766654 46777777888888877777776665
Q ss_pred CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHH----cCC-----------------CCCHHHHHHHHHHHHhcCCHH
Q 009011 298 SPDVVSYTCFIEHYCREKDFRK---VDDTLKEMQE----KGC-----------------KPSVITYTIVMHALGKAKQIN 353 (546)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~----~g~-----------------~p~~~~~~~li~~~~~~g~~~ 353 (546)
.|...||+.|..+|...||... +.+.+..+.. .|+ -||.. .++.-....|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 4677788888888888887543 3222222221 121 12221 1222233345555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSK-AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
.+++++..+...... .+... .+.-... ...+++-..+.....+ .|+..+|.+++.+....|+.+.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 666555544332111 11111 1222222 2234444444444443 489999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 433 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
.+.|++.+.+.|+.|+-+ .++...+..++..|.+.|+.|+..|+...+..+...|..
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999866 889999999999999999999999999999988886653
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=2.6e-07 Score=90.00 Aligned_cols=387 Identities=10% Similarity=0.031 Sum_probs=270.5
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD----ELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 144 a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
|.++.+.+. ..++.+..+|-.-...=-.+|+.+...+++++-. ..| ...+...|-.=...+-..|..-.+..+
T Consensus 425 AkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 425 AKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG-VEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 344444443 4566677777776666677777777777766532 223 556677776666677777777777777
Q ss_pred HHHhhhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 220 FRGMKKYGVEK--DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 220 ~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 297 (546)
.......|+.- -..|+..-...|.+.+.++-|..+|....+-+|.+..+|...+..--..|..++-..+|.+....-.
T Consensus 502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p 581 (913)
T KOG0495|consen 502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP 581 (913)
T ss_pred HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 77776666532 2456677777788888888888888887777888888888888777778888888888888887644
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 298 SPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377 (546)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 377 (546)
+ ....|-.....+-..|+...|..++.+..+.... +...|...+.......+++.|..+|.+.... .|+..+|.--
T Consensus 582 k-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 582 K-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred c-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 3 4556666677777788888888888888876433 6677778888888888888888888887764 4677777766
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR 456 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 456 (546)
+...--.++.++|.+++++..+. .|+ ...|-.+.+.+-+.++.+.|.+.|..-.+. ++-....|..+.+.--+.|.
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcc
Confidence 66666778888888888887764 344 345666666777777777777777654443 33334455555555667778
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----C-------------------------C
Q 009011 457 MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK----G-------------------------I 507 (546)
Q Consensus 457 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-------------------------~ 507 (546)
+-.|..+++...-.++. +...|-..|.+-.+.|..+.|..+..+..+. | .
T Consensus 735 ~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 735 LVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 88888888888877776 7788888888888888888887766665543 1 1
Q ss_pred CCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 508 VPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 508 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
.-|+...-.+...+....+++.+.+.|....+..
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1233344455556666677777777777665544
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=6.4e-08 Score=90.62 Aligned_cols=353 Identities=12% Similarity=0.139 Sum_probs=267.9
Q ss_pred hhHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 141 LTPAFGFF-TWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 141 ~~~a~~~f-~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
...|..+| .|+ ...|+...|.+.|+.=.+-+.++.|..+++...- ..|...+|-.-.+.--+.|+...|..+
T Consensus 157 i~gaRqiferW~----~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 157 IAGARQIFERWM----EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33444444 344 3679999999999999999999999999999876 668888998878888899999999999
Q ss_pred HHHhhhC-CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH-------
Q 009011 220 FRGMKKY-GV-EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS--SQIFNILIHGWCKTRKVDDAQKA------- 288 (546)
Q Consensus 220 ~~~m~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~------- 288 (546)
|+...+. |- .-+...+.+....=.++..++.|.-+|+-..+.+|.+ ...|......=-+.|+....+++
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9988763 11 1112233333333445677889999998888877777 66777777777777886665554
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHH
Q 009011 289 -MKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV-------ITYTIVMHAL---GKAKQINEALK 357 (546)
Q Consensus 289 -~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~a~~ 357 (546)
++.+...++ -|-.+|--.++.--..|+.+...++|+..+.. ++|-. ..|.-+=.+| ....+.+.+.+
T Consensus 310 qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344454433 37788888888888889999999999999876 44422 1121111122 34678999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 358 VYEKMKSDDCLPDTSFYSSLIFIL----SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+|....+. ++....||.-+=-+| .+..++..|.+++.... |..|...+|...|..-.+.+++|.+.+++++.+
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998884 444555665544444 46788999999999887 667999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 434 EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND-VSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 434 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
+.+ +-+..+|......-...|+.+.|..+|.-+.... .......|.+.|..-...|.++.|..+++++.+..
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 986 5567888888888888999999999999888742 33345678888888889999999999999998764
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=9.7e-10 Score=113.09 Aligned_cols=269 Identities=11% Similarity=0.059 Sum_probs=177.3
Q ss_pred CCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHh
Q 009011 193 GYVSLATMSTIMRRLVRG-----GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV---------KGNSVEHAYKVFLEF 258 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~ 258 (546)
.+.+...|...+++.... +..++|+++|++..+.. +.+...+..+..++. ..++.++|...+++.
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 445566665556654221 23567888888887653 334455555544433 234578888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 009011 259 KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT 338 (546)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (546)
....|.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.... +...
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8877888888888888888889999999999988887543 5667777888888889999999999988876433 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSAC 417 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~ 417 (546)
+..++..+...|++++|...++++.+...+-+...+..+..+|...|++++|...+.++... .|+ ....+.+...|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33344456667888999998888876542234555677778888889999999988887653 233 334455555666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009011 418 ARSEEENALKLLQKMEEDL-CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
..| ++|...++.+.+.. ..+....+.. ..+.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 666 47777676665431 1222222223 334556666666555 7766643
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=1.6e-10 Score=115.35 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=147.7
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH
Q 009011 153 TQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT 232 (546)
Q Consensus 153 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (546)
...|..|+..||..+|.-|+..|+++.|- +|.-|.-+. -+++...++.++.+..+.++.+.+. .|.+
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 34788999999999999999999999988 898888755 8888999999999988888876654 7888
Q ss_pred HHHHHHHHHHHccCCHHH---HHHHHHHhhc-----CC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEH---AYKVFLEFKD-----CI--------------PLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~---a~~~~~~~~~-----~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
.||..|+.+|...||+.. .++.+..+.. +. |.....-...+....-.|-++.+.+++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998764 2221111111 00 0000111122222223333333333333
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009011 291 EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD 370 (546)
Q Consensus 291 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 370 (546)
.+......- +...+++-+.. +..-..++........-.|+..+|.+++++-.-+|+++.|..++.+|.+.|++.+
T Consensus 164 ~~Pvsa~~~---p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 164 KVPVSAWNA---PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hCCcccccc---hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 332211000 00011222111 1222233333222221146666777777777777777777777777777776666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
..-|..++.+ .++...+..++.-|.+.|+.|+..|+..-+..+..+|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6656555544 56666666677777777777777776666665555444
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.7e-09 Score=99.40 Aligned_cols=312 Identities=12% Similarity=0.060 Sum_probs=222.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHc
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVK 244 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~ 244 (546)
+..++....+.+++.+=.+.....| .+.+...-+....+.-.+.++++|+.+|+++.+... -.|..+|+.++-+--.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 4455556667788877777777644 555555555555556677889999999999987631 2366777776644332
Q ss_pred cCCHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 245 GNSVE-HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 245 ~g~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
...+. -|..+ ..-..-.+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.|-.-|....+...|.+-
T Consensus 312 ~skLs~LA~~v----~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSKLSYLAQNV----SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHHHHHHHHHH----HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22221 12222 1223345567788888888889999999999999887654 567888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
++..++-. +.|-..|-.+.++|.-.+...=|+-.|++..+.. +-|...|.+|.++|.+.+++++|...|......|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99988873 4477888889999999999999999999988764 55888999999999999999999999998887552
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEED----LCKPD--CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG 477 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (546)
.+...+..+...|-+.++.++|...|++-.+. |..-+ .....-|...+.+.+++++|.......... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 35578888999999999999998888876552 32222 122223455677888888888776665554 34445
Q ss_pred HHHHHHHHHHHc
Q 009011 478 TYASLVRGLIES 489 (546)
Q Consensus 478 ~~~~li~~~~~~ 489 (546)
--..|++.+.+.
T Consensus 542 eak~LlReir~~ 553 (559)
T KOG1155|consen 542 EAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHh
Confidence 555565555443
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=9.3e-10 Score=100.43 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
.+..+...+...|++++|.+.+++.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~ 57 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKA 57 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333444444444444444444443
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=7.8e-10 Score=100.93 Aligned_cols=199 Identities=12% Similarity=0.069 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
....+..+...+...|++++|.+.+++..+ . .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE-H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 356788899999999999999999999987 3 56677888888999999999999999999887754 44566677777
Q ss_pred HHHHccCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDC--IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 317 (546)
..+...|++++|.+.+++.... .+.....+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 7777788888888888776542 2333445566666666777777777777666654322 344555566666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666554 23344444455555556666666666555544
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=8.8e-10 Score=113.40 Aligned_cols=251 Identities=12% Similarity=0.050 Sum_probs=160.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK---------TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
++.++|.+.|++..+..|.+...|..+..++.. .+++++|...+++..+..+. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 346788888888887777777777777665542 23477888888888776543 56677777777778888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
+++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888887764 224566777777888888888888888888776522 223333344445667888888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC
Q 009011 397 MKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET-YAPLLKMCCRKKRMKVLNFLLTHMFKN-DVSM 474 (546)
Q Consensus 397 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~ 474 (546)
+.+...+-+...+..+..++...|+.++|...+.++... .|+..+ .+.+...|...| +.+...++.+.+. ...+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765432224445666677777888888888888776554 344333 334444555555 4666666665551 1111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11122 33334445666666555 6666553
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.9e-09 Score=97.00 Aligned_cols=364 Identities=11% Similarity=0.046 Sum_probs=224.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS-LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD-TRALSVLMD 240 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~ 240 (546)
.+-....-+-++|++++|++.+.+..+ ..|+ +..|.....+|...|+++++++.--+..+. .|+ +..+..-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 344556677789999999999999988 3344 888999999999999999998888777654 444 446666667
Q ss_pred HHHccCCHHHHHHHHHHh--hcCCCC--------------------------------CHHHHHHHHHHHHh--------
Q 009011 241 TLVKGNSVEHAYKVFLEF--KDCIPL--------------------------------SSQIFNILIHGWCK-------- 278 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~--~~~~~~--------------------------------~~~~~~~li~~~~~-------- 278 (546)
++...|++++|..-.... .+++.. +....++....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 788888888875433221 111111 10000000000000
Q ss_pred -cC----CHHHHHHHHHH------------HHHC------CCC---CCHHHHHHHHHH-------HHhcCChhHHHHHHH
Q 009011 279 -TR----KVDDAQKAMKE------------MFQQ------GFS---PDVVSYTCFIEH-------YCREKDFRKVDDTLK 325 (546)
Q Consensus 279 -~g----~~~~a~~~~~~------------m~~~------g~~---~~~~~~~~li~~-------~~~~g~~~~a~~l~~ 325 (546)
.. ...++.+.+.. +.+. ... .|... ..+..+ +.-.|+.-.|..-|+
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 00 00011111100 0000 000 00000 111111 122356666666677
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405 (546)
Q Consensus 326 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 405 (546)
..+.....++. .|.-+..+|....+.++..+.|.+..+.+ +.+..+|..-..++.-.+++++|..=|++.+..... +
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~ 427 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-N 427 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-h
Confidence 66665433332 26666677888888888888888888776 335566666666677778888888888888765422 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHH--
Q 009011 406 VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS-----MDAGT-- 478 (546)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~-- 478 (546)
...|-.+.-+..+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+...+.... .+...
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 556666666667788888888888888776 4555678888888888888999999888888774322 11111
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 479 YASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.-.++..-- .+++..|..++++..+...+ ....|..|...-.+.|+.++|.++|+.--
T Consensus 507 ~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 112222112 27888888888888865421 34567788888888899999998887654
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=1.1e-08 Score=101.75 Aligned_cols=294 Identities=14% Similarity=0.164 Sum_probs=183.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc--
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK-- 244 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-- 244 (546)
...++...|++++|++.++.-.. . .......+......+.+.|+.++|..+|..+.+.+ +.+..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~-~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK-Q-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh-h-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 45667788888888888877655 3 55556677777888888888888888888888764 3344444555554422
Q ss_pred ---cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009011 245 ---GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD-DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 245 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 320 (546)
..+.+...++++++....|.....-..-+. +.....+. .+...+..+...|++ + +|+.+-..|....+.+-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHH
Confidence 235677777787777666544333222222 22222232 345556666666654 2 345555556655555555
Q ss_pred HHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 321 DDTLKEMQEK----G----------CKPSV--ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 321 ~~l~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
.+++...... + -.|+. +++..+...|...|++++|++++++.++.. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555555432 1 12333 244555666777888888888888877764 33466777777778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHhcCC
Q 009011 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY--------APLLKMCCRKKR 456 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------~~ll~~~~~~g~ 456 (546)
|++++|.+.++...+.... |...-+..+..+.+.|+.++|.+++......+..|....+ .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888887765433 5555566677777888888888888777665543322111 223345667777
Q ss_pred hHHHHHHHHHHHh
Q 009011 457 MKVLNFLLTHMFK 469 (546)
Q Consensus 457 ~~~a~~~~~~m~~ 469 (546)
+..|...|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=8.5e-09 Score=102.64 Aligned_cols=282 Identities=15% Similarity=0.172 Sum_probs=152.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----Ch
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG-----RY 213 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~ 213 (546)
++...|+....-.. ..+......+......|.+.|+.++|..++..+.+ . +|.+..-|..+..+..-.. ..
T Consensus 18 g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-r-NPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 18 GDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID-R-NPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred CCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHhhhcccccccH
Confidence 45566666654432 33334445566667777777777777777777766 2 4555555555555553222 34
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY-KVFLEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKE 291 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 291 (546)
+...++|+++... -|.......+.-.+.....+.... ..+... .+|+| .+|+.|-..|....+.+-..+++..
T Consensus 94 ~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 94 EKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred HHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 5556666666543 233333322222222222222222 222222 22333 3455665666655555555555555
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 009011 292 MFQQ----G----------FSPDVV--SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS-VITYTIVMHALGKAKQINE 354 (546)
Q Consensus 292 m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 354 (546)
.... + -.|+.. ++..+...|...|++++|++++++.++. .|+ +..|..-.+.+-+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 4332 0 112332 3344455666677777777777776665 233 4566666666777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcCCHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT------Y--NTMISSACARSEEENAL 426 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~--~~li~~~~~~g~~~~A~ 426 (546)
|.+.++.....+. -|...-+-.+..+.++|++++|.+++......+..|.... | .....+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7777777766653 3666666666777777777777777776655443222111 1 22344566666666666
Q ss_pred HHHHHH
Q 009011 427 KLLQKM 432 (546)
Q Consensus 427 ~~~~~m 432 (546)
+.|..+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 666554
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.3e-10 Score=101.69 Aligned_cols=232 Identities=11% Similarity=0.032 Sum_probs=180.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
-+.+.++|.+.|.+.+|++.|+.-... .|-+.||-.|-++|.+..+.+.|+.++.+-.+. .+-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 466788888888888888888887766 456667778888888888888888888887765 33344444556677777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 349 AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
.++.++|.++|+...+.. +.++....++...|.-.++++.|+..++.+.+.|+. +...|+.+.-+|.-.+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888889888888764 456667777777888888899999999988888876 778888888888888888888888
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 429 LQKMEEDLCKPDC--ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 429 ~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
|++....--.|+. ..|-.+-......|++..|.+-|+-....+.. +...++.|.-.-.+.|++++|..+++...+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8887765433443 45666767777888888888888888877655 67788888888888899999999988887543
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8.4e-12 Score=82.45 Aligned_cols=49 Identities=39% Similarity=0.781 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG 347 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~ 347 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.1e-08 Score=93.07 Aligned_cols=353 Identities=16% Similarity=0.143 Sum_probs=241.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHT-PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV 217 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 217 (546)
...+.|.+++.|+. ..+|| +.-|....-.|...|+|+++.+--.+..+. .+.-...+..-..++-+.|++++|+
T Consensus 129 kkY~eAIkyY~~AI---~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAI---ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred ccHHHHHHHHHHHH---hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHH
Confidence 36788999999996 46788 778999999999999999888776666552 2222333433344444445554443
Q ss_pred ----------------------HHHHH---------hhhCC--CCCCHHHHHHHHHHHHcc--------C----------
Q 009011 218 ----------------------EAFRG---------MKKYG--VEKDTRALSVLMDTLVKG--------N---------- 246 (546)
Q Consensus 218 ----------------------~~~~~---------m~~~~--~~~~~~~~~~ll~~~~~~--------g---------- 246 (546)
+++++ |.+.+ +.|......+....+... +
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 22221 11112 335555444444433210 0
Q ss_pred ----------CHHHHHHHHHHhhc----CCC---CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 247 ----------SVEHAYKVFLEFKD----CIP---LSS------QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 247 ----------~~~~a~~~~~~~~~----~~~---~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
.+..|.+.+.+-.. ... .|. .+.+.-.-.+.-.|+.-.|..-|+..+.....++. .
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-L 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-H
Confidence 11122222211100 001 111 11122222334468888999999999887554332 3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK 383 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 383 (546)
|-.+...|....+.++..+.|+...+.+.. |..+|..-...+.-.+++++|..-|++.+... +.+...|-.+..+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 777888899999999999999999887543 55667777777777889999999999998875 4467777777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH--HHHHHHHHhc
Q 009011 384 AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-------CETY--APLLKMCCRK 454 (546)
Q Consensus 384 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~--~~ll~~~~~~ 454 (546)
.++++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++. .|+ ...+ -.++. +--.
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk 516 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchh
Confidence 99999999999999885 3446789999999999999999999999998875 233 1111 11221 2234
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 455 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
+++..|..++.+..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999999998877 567899999999999999999999998764
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.6e-08 Score=93.73 Aligned_cols=285 Identities=16% Similarity=0.083 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFI 308 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 308 (546)
..+......-.+-+-..+++.+..++++.+.+..|.....+-.-|.++.+.|+..+-..+=.++.+.-+. ...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 3444445555556677888999999999888888888888888888899999888888877788776443 678888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 009011 309 EHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD--DCLPDTSFYSSLIFILSKAGR 386 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 386 (546)
..|...|+..+|.+.|.+...-+.. =...|-.....|+-.|.-|+|+..|...-+. |+. -+..| +.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhcc
Confidence 8888889999999999887654322 1236778888888899999999888777654 221 12222 4445788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHHhcCChHHH
Q 009011 387 VKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED----L-CKP-DCETYAPLLKMCCRKKRMKVL 460 (546)
Q Consensus 387 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p-~~~~~~~ll~~~~~~g~~~~a 460 (546)
++-|.++|.+..... +-|+...+-+.-.....+.+.+|..+|+..... + -.+ -..+++.|..+|.+.+..++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999888643 336777777777777778899999999887622 1 011 234678888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 461 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
+..++.......+ +..+|.++.-.|...|+++.|.+.|.+.. .+.|+..+...++..+.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 9999999887655 88899999999999999999999999888 67788877776666543
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=3.3e-07 Score=89.40 Aligned_cols=394 Identities=14% Similarity=0.110 Sum_probs=238.2
Q ss_pred HHHHHHhhc-CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 009011 130 VEQTLRRFS-NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLV 208 (546)
Q Consensus 130 ~~~~l~~~~-~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~ 208 (546)
+...++.+. ......+++..-+.. ++.--.++.....-.+...|+-++|.+....-.+ + +..+..+|+.+.-.+.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-~-d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-N-DLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhc-c-CcccchhHHHHHHHHh
Confidence 344444332 233444555555543 3333334444445556677888888888877766 5 7777888888877777
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKA 288 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (546)
...++++|+..|......+ +.|...+.-+.-.-++.|+++.....-....+..|.....|..++.++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887654 555666655555556677777776666666666666777788888888888888888888
Q ss_pred HHHHHHCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHH
Q 009011 289 MKEMFQQG-FSPDVVSYTCFI------EHYCREKDFRKVDDTLKEMQEKGCKPSVITY-TIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 289 ~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~ 360 (546)
+++..+.. -.|+...|.... ....+.|.+++|.+.+..-... + .|...+ ..-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 88887664 245555544332 2345567777777766654433 1 122222 234456677888888888888
Q ss_pred HHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHH-HHHHHHHH----------------------------------CCCCC
Q 009011 361 KMKSDDCLPDTSFYSS-LIFILSKAGRVKDAN-EIFEDMKK----------------------------------QGVVP 404 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~----------------------------------~~~~p 404 (546)
.+...+ ||..-|.. +..++.+..+.-++. .+|....+ +|+++
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 888764 55554443 333443333323333 44443332 22221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCC----------CCCCHH--HHHHHHHHHHhcCChHHHHHHH
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKME--------EDL----------CKPDCE--TYAPLLKMCCRKKRMKVLNFLL 464 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~ 464 (546)
++..+...|- ++.++- +++++. ..| -+|... |+-.++..+-+.|+++.|..++
T Consensus 322 ---vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 322 ---VFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred ---hhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1222222221 111111 232221 111 134443 3445666777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 465 THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 465 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
+......+. -+..|-.-.+.+...|++++|..++++..+.. .+|..+-..-.....+.++.++|.++.....+.+
T Consensus 395 d~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 395 DLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 888875332 23455555677788888888888888888664 3455554456666778888888888887776544
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.8e-11 Score=80.90 Aligned_cols=49 Identities=45% Similarity=0.715 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=2.9e-09 Score=94.83 Aligned_cols=235 Identities=14% Similarity=0.087 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
++.=-+-+..+|.+.|.+.+|..-|+.-.+. .|-+.||..|-.+|.+..+.+.|..++.+-.+.+|.++....-+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3333456677788888888888888777654 56777777788888888888888888887777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
+-..++.++|.++++...+.... ++.....+...|.-.++.+-|+.+|+.+.+.|+. +...|+.+.-+|.-.+++|.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 88888888888888877765322 4445555556666777888888888888888766 666777777777777888888
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPD--TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+.-|.+....-..|+ ..+|..+-......|++..|.+.|+-....+.. ....+|.|...-.+.|++++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 777777665433333 345555666666777777777777777654432 45667777776777788888877777765
Q ss_pred HC
Q 009011 434 ED 435 (546)
Q Consensus 434 ~~ 435 (546)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 53
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.3e-07 Score=87.13 Aligned_cols=304 Identities=13% Similarity=0.026 Sum_probs=220.1
Q ss_pred CCHHHHHHHHHhhcC-ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 009011 125 VSNSLVEQTLRRFSN-DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203 (546)
Q Consensus 125 ~~~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~l 203 (546)
++...+..+...|+. +...+...|..+....-++.|.+....+.+.+...|+.++|...|+.... - ++.+...+..-
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~-dpy~i~~MD~Y 272 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-A-NPDNVEAMDLY 272 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-C-ChhhhhhHHHH
Confidence 445556666665543 44455555666656677888999999999999999999999999998876 3 45555555555
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
.-.+.+.|++++...+...+.... .-+..-|-.-+..+....+++.|..+-++..+..+.+...+-.-...+...|+.+
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH
Confidence 666778888888887777775432 2334444444455566778888888888877766777777766677788889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVM-HALG-KAKQINEALKVYEK 361 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~ 361 (546)
+|.-.|+......+ -+...|.-|+..|...|++.+|.-+-+...+. +.-+..+.+.+. ..|. ....-++|.+++++
T Consensus 352 ~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 99988988776532 37789999999999999999988777665543 233555555552 3332 23345788888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 362 MKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 362 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
-.+.. +.-....+.+...+...|+.+++..+++..... .||....+.+...+...+.+.+|++.|......+
T Consensus 430 ~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 430 SLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 77653 223456677888888899999999999988753 5888888999999999999999999998887753
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.6e-08 Score=94.43 Aligned_cols=284 Identities=12% Similarity=0.038 Sum_probs=217.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
...+.+....-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++.+..|..+.+|.++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 33456666666777788889999999998887754 67777777777788888888887777788888888889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHhc
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK--G-CKPSVITYTIVMHALGKA 349 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g-~~p~~~~~~~li~~~~~~ 349 (546)
.-.|.-.|+..+|++.|.+....... =...|-.+...|+-.|..++|+..+...-+. | ..| +--+.--|.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t 393 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRT 393 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHh
Confidence 99999999999999999887654222 2457888888888899999998888776653 3 223 22344567788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHH
Q 009011 350 KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ--GVV----PNVLTYNTMISSACARSEEE 423 (546)
Q Consensus 350 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~li~~~~~~g~~~ 423 (546)
++.+.|.+.|.+..... +.|+.+.+-+.-.....+.+.+|...|+..... .+. ....+++.|..+|.+.+..+
T Consensus 394 ~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999887763 557888888877777888899999998877621 111 13456778888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 424 NALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 424 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
+|+..+++..... +.+..++..+.-.|...|+++.|...|.+... +.||..+-..++..+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999988764 66788899998889999999999999988775 456666666655543
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=2.2e-08 Score=98.60 Aligned_cols=241 Identities=22% Similarity=0.198 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--C
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEK-----G-CKPSVIT-YTIVMHALGKAKQINEALKVYEKMKSD-----DC--L 368 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~--~ 368 (546)
+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555555555555555544432 1 1122222 223555666677777777777666432 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 009011 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKK---Q--GVV-PNV-LTYNTMISSACARSEEENALKLLQKMEED---LCK 438 (546)
Q Consensus 369 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~--~~~-p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 438 (546)
--..+++.|..+|.+.|++++|...++...+ . |.. |.+ ..++.+...++..+++++|..++++..+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234555566667777777776666665432 1 111 122 12445556667777777777777765432 111
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 009011 439 PD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKN----DV---SMDAGTYASLVRGLIESGKLELACSFFEEMIS--- 504 (546)
Q Consensus 439 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 504 (546)
++ ..+++.|...|...|++++|.++++++... +- .-....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 356777777788888888888877776551 11 11234567777777778888878777776442
Q ss_pred -CCCC-CC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 505 -KGIV-PY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 505 -~g~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
.|.. |+ ..+|..|...|...|++|+|.++...+...+++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2321 22 346777788888888888888888777665554
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1e-06 Score=81.40 Aligned_cols=279 Identities=10% Similarity=0.001 Sum_probs=145.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV-SYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
..++-+....++.|+.....+.+.+...|+.++|+..|++..... |+.. ......-.+.+.|+++....+...+...
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 334444455677788888888888888888888888888776542 2211 1111112234566666666666655543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410 (546)
Q Consensus 331 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 410 (546)
.- -+...|..-........+++.|+.+-++.++.+ +-+...|-.=...+...|++++|.-.|+...... +-+...|.
T Consensus 296 ~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~ 372 (564)
T KOG1174|consen 296 VK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYR 372 (564)
T ss_pred hh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHH
Confidence 21 112222222233334456666666666655543 2233334333344556666666666666655432 12556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLL-KMCC-RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 488 (546)
-++..|...|.+.+|..+-....+. +..+..+...+. ..|. ....-++|..+++...+..+. -....+.+...+..
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHh
Confidence 6666666666666666555444332 123333333331 1111 122235555555555543222 22334445555556
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.|+.++++.+++... ...||....+.+.+.+...+..+++...+...-+
T Consensus 451 Eg~~~D~i~LLe~~L--~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHL--IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hCccchHHHHHHHHH--hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666666666666655 2345666666666666666666655555544433
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=3.6e-08 Score=97.01 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CC-CCCHHHH-HHHHHHHHccCCHHHHHHHHHHhhc-----
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-----GV-EKDTRAL-SVLMDTLVKGNSVEHAYKVFLEFKD----- 260 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~----- 260 (546)
.|.-..+...+...|...|+++.|..+++...+. |. .|...+. +.+...|...+++.+|..+|+++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3333444444555555555555555555444321 10 1222222 2244445555555555555544321
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 261 ---CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-----GFS-PDV-VSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 261 ---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~-~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
..|.-..+++.|...|.+.|++++|...+++..+. |.. |.+ ..++.+...++..+++++|..++....+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 12222334555666666666666666665554321 111 122 23445556666777777777776654432
Q ss_pred ---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 331 ---GCKP----SVITYTIVMHALGKAKQINEALKVYEKMKSD----DC---LPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 331 ---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
-..+ -..+++.+...|.+.|++++|.++|+++... +. .-....++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 1111 2356777777788888888888777776532 11 11245566777777777777777777765
Q ss_pred HHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 397 MKK----QGVV-P-NVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 397 ~~~----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
... .|.. | ...+|..|...|.+.|+++.|.++.+.+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 2321 2 23567777888888888888888777664
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=9.3e-06 Score=79.40 Aligned_cols=365 Identities=12% Similarity=0.137 Sum_probs=189.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC------CCCCHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG------VEKDTRALS 236 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~ 236 (546)
+|...+......+-++.+..+++...+. . +..-+.-|..+++.+++++|.+.+....... .+-+-..|.
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~--~---P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV--A---PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc--C---HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 3444444445555555566666555541 1 2223333666666666666666665553211 123333444
Q ss_pred HHHHHHHccCCHH---HHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 237 VLMDTLVKGNSVE---HAYKVFLEFKDCIPLS-SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 237 ~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
.+.+..++.-+.- ....++......++.. ...|++|.+.|.+.|.+++|.++|++....- .+..-|+.+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 4444444332221 1222333322222221 2457888888888888888888888877652 24445556666665
Q ss_pred hcCC----------------------hhHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 313 REKD----------------------FRKVDDTLKEMQEKG-----------CKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 313 ~~g~----------------------~~~a~~l~~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
.-.. ++-.+.-|+.+...+ -+.++..|..-+. ...|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 3211 111222222222221 1112223322222 2245566666677
Q ss_pred HHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 360 EKMKSDDCLP------DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN---VLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 360 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
.+..+. +.| -...|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...=.++.+++.|+++++
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 666543 122 234677788888888999999999988876433211 2344444455556778888888877
Q ss_pred HHHHCC-----------CCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------
Q 009011 431 KMEEDL-----------CKP------DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV--------------------- 472 (546)
Q Consensus 431 ~m~~~~-----------~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------------------- 472 (546)
.....- .++ +...|...+..--..|-++....+++.+.+..+
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 764321 111 112344444444456666666666666654322
Q ss_pred -------------CCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHH-HHHHH-HHHHHhcChhhHHHHH
Q 009011 473 -------------SMD-AGTYASLVRGLIE---SGKLELACSFFEEMISKGIVPYHS-TYKML-EEKLEKKRLGNAKERI 533 (546)
Q Consensus 473 -------------~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l-~~~~~~~g~~~~a~~~ 533 (546)
.|+ ...|+..+.-+.+ .-+.+.|..+|++..+ |.+|... |...+ ...=.+-|....|..+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 122 3456666655543 2357788888888877 4544433 22222 2222334666777777
Q ss_pred HHHHH
Q 009011 534 NKLLA 538 (546)
Q Consensus 534 ~~~m~ 538 (546)
+++..
T Consensus 609 yerat 613 (835)
T KOG2047|consen 609 YERAT 613 (835)
T ss_pred HHHHH
Confidence 66643
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=2.9e-06 Score=82.80 Aligned_cols=404 Identities=10% Similarity=0.093 Sum_probs=222.5
Q ss_pred CCHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC--CC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHH
Q 009011 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYM--HT--PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATM 200 (546)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~--~~--~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 200 (546)
-+...+..+....+..++.....---+..+.|+. +| ...|++|.+.|.+.|.++.|.++|++... ...+..-|
T Consensus 208 Sn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~---~v~tvrDF 284 (835)
T KOG2047|consen 208 SNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ---TVMTVRDF 284 (835)
T ss_pred chhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hheehhhH
Confidence 3445555555555554444333222222223332 23 35799999999999999999999999887 44666666
Q ss_pred HHHHHHHHhcCC----------------------hHHHHHHHHHhhhCC-C----------CCCHHHHHHHHHHHHccCC
Q 009011 201 STIMRRLVRGGR----------------------YDDAVEAFRGMKKYG-V----------EKDTRALSVLMDTLVKGNS 247 (546)
Q Consensus 201 ~~li~~~~~~g~----------------------~~~A~~~~~~m~~~~-~----------~~~~~~~~~ll~~~~~~g~ 247 (546)
+.+.+.|++-.. ++-....|+.+...+ + +.++..+..-+. +..|+
T Consensus 285 t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~ 362 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGN 362 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCC
Confidence 666666654221 111223333332211 0 111112211111 22344
Q ss_pred HHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChh
Q 009011 248 VEHAYKVFLEFKDCIPLS------SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~ 318 (546)
..+-...+.+....+.|. ...|..+.+.|-..|+++.|..+|++..+-..+-- ..+|......=.+..+++
T Consensus 363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence 555566666654432222 34588999999999999999999999887643311 345655566666778888
Q ss_pred HHHHHHHHHHHcC-----------CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKG-----------CKP------SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381 (546)
Q Consensus 319 ~a~~l~~~m~~~g-----------~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 381 (546)
.|+++++....-- .++ +...|...++.--..|-++....+|+.+.+..+. ++.........+
T Consensus 443 ~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfL 521 (835)
T KOG2047|consen 443 AALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFL 521 (835)
T ss_pred HHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 9988887654321 111 2234445555555677888888888888877654 333222223334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcC
Q 009011 382 SKAGRVKDANEIFEDMKKQGVVPNV-LTYNTMISSACA---RSEEENALKLLQKMEEDLCKPDCETYAPLL--KMCCRKK 455 (546)
Q Consensus 382 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~g 455 (546)
-...-++++.+++++-...-..|+. ..|+..+.-+.+ ...++.|..+|++..+ |++|...-+--|+ ..--+.|
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh
Confidence 4455577777777765443333443 245554444332 2367888888888877 5665542222221 1112345
Q ss_pred ChHHHHHHHHHHHh---------------------CCCCCCHHHHHHHHHH----------------HHHcCChHHHHHH
Q 009011 456 RMKVLNFLLTHMFK---------------------NDVSMDAGTYASLVRG----------------LIESGKLELACSF 498 (546)
Q Consensus 456 ~~~~a~~~~~~m~~---------------------~~~~~~~~~~~~li~~----------------~~~~g~~~~A~~~ 498 (546)
....|+.+++++.. .|+..+...|..-|.. =++.|..+.|..+
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 56666666665432 2333333333332221 2345666667666
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcChhhHHHHHHH
Q 009011 499 FEEMISK-GIVPYHSTYKMLEEKLEKKRLGNAKERINK 535 (546)
Q Consensus 499 ~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 535 (546)
+....+- ..+.+...|.+--.-=.+.|+.+...++++
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6655443 223344455565555566676555544444
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.1e-07 Score=81.20 Aligned_cols=197 Identities=15% Similarity=0.050 Sum_probs=129.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA 418 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 418 (546)
...+.-.|...|+...|.+-+++..+.+ +.+..++..+...|-+.|..+.|.+.|++..+.... +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4445566777777777777777777664 335566666777777777777777777777654432 44556666666677
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 009011 419 RSEEENALKLLQKMEEDLCKP-DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 497 (546)
.|++++|...|++....-..+ -..+|..+.-+..+.|+.+.|...+++..+.+.. ...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 777777777777766542111 2346666666666777777777777777776554 34455666666777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 498 FFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 498 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
+++.....+. ++.......|+.-...|+.+.+.++-..+++
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777766654 6666666666666667777777777666654
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.8e-06 Score=82.20 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 387 VKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ--------KMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 387 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
+.+|.+++...-+....-.....-.++......|+++.|.+++. .+.+.+..|. +...+...+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCc
Confidence 33444444444333222223344555666777888888888888 5555444444 4455566677777777
Q ss_pred HHHHHHHHHHh--CCCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHH
Q 009011 459 VLNFLLTHMFK--NDVSMDAGTY----ASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKER 532 (546)
Q Consensus 459 ~a~~~~~~m~~--~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 532 (546)
.|..++.+... ..-.+..... ...+..-.+.|+-++|..+++++.+.+ .+|..+...++.+|++- +.+.|+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHH
Confidence 77777776654 1111222333 333334457788889999999888753 46777777788777553 4555555
Q ss_pred HHHH
Q 009011 533 INKL 536 (546)
Q Consensus 533 ~~~~ 536 (546)
+-+.
T Consensus 513 l~k~ 516 (652)
T KOG2376|consen 513 LSKK 516 (652)
T ss_pred Hhhc
Confidence 5443
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=1.5e-06 Score=84.95 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH---H
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS-LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV---L 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---l 238 (546)
.|..+...+...|+.+.+.+.+....+......+ ..........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 3444555555566666666666555542211222 2222233444556777788887777776542 334433331 1
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
.......+..+.+.+.+.......+........+...+...|++++|...+++..+.... +...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHH
Confidence 111122344455555554432334444455556666777777777777777777766432 4555666667777777777
Q ss_pred HHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 319 KVDDTLKEMQEKGC-KPSV--ITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 319 ~a~~l~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777665421 1222 2344566666777777777777777653
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=9.4e-07 Score=86.45 Aligned_cols=308 Identities=10% Similarity=0.015 Sum_probs=179.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG-VEKDTRA-LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNI 271 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (546)
|.....|..+...+...|+.+++...+....+.. ...+... .......+...|++++|.+.+++.....|.+...+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3445566666777777788888777776664432 1223222 2222334567789999999998887777777766553
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009011 272 LIHGWC----KTRKVDDAQKAMKEMFQQGFSPD-VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHAL 346 (546)
Q Consensus 272 li~~~~----~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 346 (546)
...+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 22222 244555555555441 122233 3344455567788899999999999988874 33566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhc
Q 009011 347 GKAKQINEALKVYEKMKSDDC-LPDT--SFYSSLIFILSKAGRVKDANEIFEDMKKQGV-VPNVLTY-N--TMISSACAR 419 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~ 419 (546)
...|++++|...+++..+... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 889999999999888776532 1232 3455677888889999999999988754322 1111111 1 222223333
Q ss_pred CCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------CCHHHHHHHH--HHHH
Q 009011 420 SEEENALKL--LQKMEEDLC--KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS------MDAGTYASLV--RGLI 487 (546)
Q Consensus 420 g~~~~A~~~--~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~~li--~~~~ 487 (546)
|..+.+.++ +........ ............++...|+.+.|..+++.+...... ....+-..++ .++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433322222 111111100 111122224556677788888888888877662211 0111112222 3345
Q ss_pred HcCChHHHHHHHHHHHHC
Q 009011 488 ESGKLELACSFFEEMISK 505 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~ 505 (546)
..|+.++|.+.+.+....
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888888888776643
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=4.8e-06 Score=83.15 Aligned_cols=380 Identities=14% Similarity=0.108 Sum_probs=256.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV-EKDTRA 234 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~ 234 (546)
.+.-|..+|..|.-++..+|+++.+.+.|++... . .......|+.+-..|.-.|.-..|+.+++.-....- ++|...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-F-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-h-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 4456788999999999999999999999998876 4 566778888999999999999999999988754332 334444
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 009011 235 LSVLMDTLV-KGNSVEHAYKVFLEFKD-----CIPLSSQIFNILIHGWCKT-----------RKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 235 ~~~ll~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~ 297 (546)
+-..-..|. +.+.++++..+-.++.+ ........|..+.-+|... ....++.+.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444 34777777766655543 1122233444444444322 123467777888777654
Q ss_pred C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------
Q 009011 298 S-PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD-DCLP------ 369 (546)
Q Consensus 298 ~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~------ 369 (546)
. |+..-| +.--|+..++++.|.+..++..+-+-.-+...|..+.-.+.-.+++.+|+.+.+...+. |...
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 3 333333 33456777889999999999888766667888888888888889999999988776543 1100
Q ss_pred ------------CHHHHHHHHHHHHh---------cC--------------CHHHHHHHHHHH--------HHCC-----
Q 009011 370 ------------DTSFYSSLIFILSK---------AG--------------RVKDANEIFEDM--------KKQG----- 401 (546)
Q Consensus 370 ------------~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~~--------~~~~----- 401 (546)
-..|...++..+-. .| +..+|.+....+ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 01111222221110 00 111111111100 0001
Q ss_pred ----C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 402 ----V--VPN------VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 402 ----~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+ .|+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0 111 1234455667778888899988888877653 44556666666778889999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACS--FFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.++. ++....++...+.+.|+..-|.. ++.++.+.+ +.+...|..+-..+.+.|+.++|-+.|.-.-+..+
T Consensus 713 ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 713 LDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred cCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7766 77889999999999999888877 999999765 34678899999999999999999999987766544
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=2.3e-07 Score=87.43 Aligned_cols=195 Identities=10% Similarity=-0.014 Sum_probs=97.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
.|..+...+...|+.++|...|++..+..|.+...|+.+...+...|++++|...|++..+..+. +..+|..+...+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34455555556666666666666655555556666666666666666666666666666654322 34455555555666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEI 393 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 393 (546)
.|++++|.+.++...+.. |+..........+...++.++|...+.+..... .++...+ .+. ....|+...+ +.
T Consensus 145 ~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HH
Confidence 666666666666665542 221111111122233455666666665443321 2221111 111 2223444332 23
Q ss_pred HHHHHHCC---C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 394 FEDMKKQG---V---VPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 394 ~~~~~~~~---~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
++.+.+.. + +.....|..+...+.+.|+.++|...|++..+.+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33333210 0 0112355666666666666666666666666543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=3e-07 Score=86.73 Aligned_cols=232 Identities=13% Similarity=0.023 Sum_probs=154.4
Q ss_pred HHcCCChHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 171 LGKSKKFCLMWELVKEMDELNNG--YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
....+..+.++.-+.++....+. ......|..+...|...|+.++|+..|++..+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 33345667777777777753211 1224557777778888899999999998888754 55678888888888999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
++|...|+...+..|.+..+|..+...+...|++++|.+.|+...+..+ +..........+...++.++|...+++..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999888877777888888888888889999999999998887643 32212222223445678889988887655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 329 EKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD---DC---LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 329 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
... .|+...+ .+ .....|+...+ +.+..+.+. .. +....+|..+...+.+.|++++|...|++..+.++
T Consensus 193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 2332222 22 22334555443 244444322 11 11335788888889999999999999999887542
Q ss_pred CCCHHHHHH
Q 009011 403 VPNVLTYNT 411 (546)
Q Consensus 403 ~p~~~~~~~ 411 (546)
||..-+..
T Consensus 268 -~~~~e~~~ 275 (296)
T PRK11189 268 -YNFVEHRY 275 (296)
T ss_pred -chHHHHHH
Confidence 35444433
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.9e-07 Score=82.44 Aligned_cols=326 Identities=13% Similarity=0.140 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH-HHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV-LMD 240 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-ll~ 240 (546)
.-+++.+..+.+..+++.|++++..-.+ . .+.+....+.+..+|....++..|-+.++++-.. -|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~E-r-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELE-R-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHh-c-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3477888888999999999999988777 3 5668888888999999999999999999998653 455544432 234
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH--H--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL--I--HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--i--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
.+-+.+.+..|..+...|.+. ....+-. + ......+++..+..++++....| +..+.+.......+.|+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 566778888888888877653 2222222 1 22335678888888888776432 44455555555668899
Q ss_pred hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC-----------------------
Q 009011 317 FRKVDDTLKEMQEK-GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL--PD----------------------- 370 (546)
Q Consensus 317 ~~~a~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----------------------- 370 (546)
++.|.+-|+...+- |.. ....|+..+.- .+.|+++.|++...++++.|+. |.
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999888765 455 45567765544 4678899999999999988876 31
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 371 ---TSFYSSLIFILSKAGRVKDANEIFEDMKKQ-GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAP 446 (546)
Q Consensus 371 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 446 (546)
+..+|.-...+.+.|+++.|.+.+..|.-+ .-..|++|...+.-.- ..+++.+..+-+.-+.+.+ +-...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 011222233345678888888888877532 2345667766544322 2345555555555565554 344578888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q 009011 447 LLKMCCRKKRMKVLNFLLTHMFKNDVS-MDAGTYASLVRGLI-ESGKLELACSFFEEMI 503 (546)
Q Consensus 447 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 503 (546)
++-.||+..-++.|..++.+--..... .+...|+ ++.++. ..-..++|.+-++.+.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 888899888888888887653322111 1233333 334443 3456777777766654
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=3.2e-07 Score=78.31 Aligned_cols=197 Identities=11% Similarity=0.013 Sum_probs=134.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
.-.|.-.|...|++..|.+-+++..+ . ++.+..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~-~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE-H-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45566677777888888877777777 3 56667777777777777777777777777776653 455666777777777
Q ss_pred ccCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 244 KGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
..|.+++|...|++... ..+.-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 77777777777766654 34445566777777777777777777777777665433 2344555666666777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
.+++.....+. ++..+.-..|+.--..|+.+.+.++=..+...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777766655 56666666666666677777666655555443
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=2.1e-05 Score=77.12 Aligned_cols=365 Identities=12% Similarity=0.126 Sum_probs=203.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|........+ +-.-+.+.|+.+.-.+...+++++|++.|..... . .+.+...|.-+.-.-++.|+++...+
T Consensus 55 g~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~-~-~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK-I-EKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 445555555554442 3344556677777777777888888888877776 3 45566666555555555566655555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC--CCCHHHHHHH------HHHHHhcCCHHHHHHHHH
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI--PLSSQIFNIL------IHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l------i~~~~~~g~~~~a~~~~~ 290 (546)
.-..+.+.. +.....|..+..+..-.|+...|..+.++..+.. +++...+.-. .....+.|..++|.+.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 554444321 2223344455555555566666666666555421 3444333222 223344555555555544
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHH-HHH--------
Q 009011 291 EMFQQGFSPDVVSY-TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI-VMHALGKAKQINEAL-KVY-------- 359 (546)
Q Consensus 291 ~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~-~~~-------- 359 (546)
.-... ..|-..+ .+-...+.+.+++++|..++..+... .||..-|.. +..++.+.-+.-++. .+|
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 43322 1122211 22233455556666666666666655 233333332 223332222222222 333
Q ss_pred --------------------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-------
Q 009011 360 --------------------------EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK----QGV------- 402 (546)
Q Consensus 360 --------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~------- 402 (546)
..+.+.|+++ ++..+...|-.-...+-..++...+.. .|.
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 3333444332 333333333222222212222222221 111
Q ss_pred ---CCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 009011 403 ---VPNVLTYN--TMISSACARSEEENALKLLQKMEEDLCKPDC-ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDA 476 (546)
Q Consensus 403 ---~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (546)
+|+...|+ .++..+-..|+++.|..+++..+.. .|+. ..|..=.+.+...|++++|..++++..+.+.. |.
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR 439 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DR 439 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hH
Confidence 45555554 4677888999999999999999876 5553 45655667899999999999999999987643 66
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
..-..-+.-..++++.++|.++.......|. +....-.-+++
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqc 481 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQC 481 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhh
Confidence 6655777778899999999999999988875 44444344444
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=3.6e-06 Score=93.25 Aligned_cols=338 Identities=10% Similarity=0.050 Sum_probs=205.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC-------CC--HHHHHHHHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP-------LS--SQIFNILIHG 275 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~--~~~~~~li~~ 275 (546)
......|+++.+.++++.+.......+..........+...|+.+++...+........ +. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653211122222233344455677899998888876643211 11 1222334455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDV----VSYTCFIEHYCREKDFRKVDDTLKEMQEK----GCK-PSVITYTIVMHAL 346 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~~~~~li~~~ 346 (546)
+...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |.. ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66789999999999987763111121 24455566677889999999998887643 111 1123445566677
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 009011 347 GKAKQINEALKVYEKMKSD----DCL--P-DTSFYSSLIFILSKAGRVKDANEIFEDMKKQ--GVVP--NVLTYNTMISS 415 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~li~~ 415 (546)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999988876542 211 1 2233445556677789999999988877542 1112 23334445667
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 009011 416 ACARSEEENALKLLQKMEEDL--CKPDCE--TY--APLLKMCCRKKRMKVLNFLLTHMFKNDVSMD---AGTYASLVRGL 486 (546)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~ 486 (546)
+...|+.++|.+.++...... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999999888875421 111110 00 1122344557888998888777554221111 11234566778
Q ss_pred HHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 487 IESGKLELACSFFEEMISK----GIVPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
...|++++|...+++.... |..++ ..+...+..++...|+.++|.+.+....+...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 8889999999999887653 33222 23455566778889999999888887765543
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=3.7e-06 Score=76.25 Aligned_cols=382 Identities=12% Similarity=0.069 Sum_probs=213.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
.+...|..+..+.... +-.-...+---+...+-+.|++++|...+..+.. . ..++...+-.+.-.+.-.|.+.+|..
T Consensus 36 rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-K-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-c-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 4666777777766522 1111122222356677788999999999988877 3 45556666666666667788888887
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
+-.+. +.++..-..++....+.|+-++-..+...+.+ ...---+|.......-.+++|.+++++....+
T Consensus 113 ~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 113 IAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 76654 33344444555556677777777777666654 22334455555555567899999999988753
Q ss_pred CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------H
Q 009011 299 PDVVSYTCF-IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM--------------K 363 (546)
Q Consensus 299 ~~~~~~~~l-i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~--------------~ 363 (546)
|+-...|.- .-+|.+..-++-+.++++...+. ++.+....+.......+.=+-..|.+-.+++ .
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 444445543 34677888888888888877765 2323344443333222211111111111111 1
Q ss_pred hCCC------C------CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----------------
Q 009011 364 SDDC------L------PD-----TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN---------------- 410 (546)
Q Consensus 364 ~~~~------~------~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---------------- 410 (546)
+.+. + |. +..--.++-.|.+.+++.+|..+.+++.-. .|-.....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHH
Confidence 1110 0 00 111122344566778888887776655310 11111111
Q ss_pred -------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009011 411 -------------------------TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT 465 (546)
Q Consensus 411 -------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 465 (546)
++...+.-..++++.+.++..+...=..-|...| .+.++.+..|...+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 1111122222333333333333322111222222 35567777888888888887
Q ss_pred HHHhCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 466 HMFKNDVSMDAGTYA-SLVRGLIESGKLELACSFFEEMISKGIVPYHS-TYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 466 ~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.+....++ |..+|. .+.++|.+.|+++-|+.++-.+- -..+.. ....+.+-|.+.+.+=-|.+.|.++...++
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 77665555 455554 45577788888888877765553 222333 334445667788888888888888776554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.2e-06 Score=75.89 Aligned_cols=398 Identities=11% Similarity=0.042 Sum_probs=234.5
Q ss_pred CCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHH
Q 009011 121 CGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLA 198 (546)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ 198 (546)
.|+.+.+..+..++.++-. ....+.+...... ...+.+....+.|...|-...++..|-+-++++.. ..|...
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~--Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~ 78 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSEL--ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELE 78 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHH
Confidence 4555555556666665433 3334444444333 22334777888899999999999999999999987 333333
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 199 TMS-TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT--LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 199 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
-|. --.+.+.+.+.+.+|+.+...|.+. ++...-..-+.+ .-..+++..+..++++.... .+..+.+.....
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCl 153 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchhe
Confidence 322 2366778899999999999888542 332222222222 33568888888888877642 244455566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------CHH-----
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP-------------SVI----- 337 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-------------~~~----- 337 (546)
..+.|+.++|.+-|....+-|---....|+..+..| +.|+++.|+++..+++++|++- |+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 778999999999999988764333677888766544 6689999999999999987532 211
Q ss_pred ---HHHHHHH-------HHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 338 ---TYTIVMH-------ALGKAKQINEALKVYEKMKSDD-CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 338 ---~~~~li~-------~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
.-..++. .+.+.|+++.|.+.+-.|.-.. ...|+.|...+.-. --.+++.+..+-+.-+.+.... -.
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ 310 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PP 310 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-Ch
Confidence 1122333 3456788888888888876432 23466665544322 1234565666666666655443 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLC-KPDCETYAPLLKMCC-RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
.||..++-.||++.-++.|-+++.+-...-. -.+...|+ ++.++. -.-..+++.+-++.+...- ....-..-+.
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~ 386 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQ 386 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6888888899999999999988865321110 11222333 333333 3445666666665544310 0011111111
Q ss_pred HH-HHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 485 GL-IESGKLEL----ACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 485 ~~-~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.- .+..+-+. |++-+++..+. -..+..+-...+....++..++++|..-..
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11 12222222 22223333222 111222333445677888889888876543
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=3.2e-05 Score=77.49 Aligned_cols=381 Identities=11% Similarity=0.045 Sum_probs=254.8
Q ss_pred cCCCCCCHHHHHHHHHh--hcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH
Q 009011 120 GCGVSVSNSLVEQTLRR--FSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL 197 (546)
Q Consensus 120 ~~~~~~~~~~~~~~l~~--~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~ 197 (546)
...+..++.++..+-=. +++....+-+.|.... ++..-..+.|+.+-..|..+|.-..|..++++-....+.+.+.
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33455556555544332 2344555555666554 5566677889999999999999999999999877644234455
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHhhhC--CC--CCCHHHHHHHHHHHHcc----C-------CHHHHHHHHHHhhcC
Q 009011 198 ATMSTIMRRLVR-GGRYDDAVEAFRGMKKY--GV--EKDTRALSVLMDTLVKG----N-------SVEHAYKVFLEFKDC 261 (546)
Q Consensus 198 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~----g-------~~~~a~~~~~~~~~~ 261 (546)
..+-..-..|.+ .+..++++++-.+.... +. ......|..+.-+|... . ...++.+.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 555444455544 46777787777776551 11 23344555555554422 1 123566677777666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC-------
Q 009011 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK-GCK------- 333 (546)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~------- 333 (546)
.+.|+.+...+.--|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 666777777777788999999999999999999876779999999999999999999999999876643 210
Q ss_pred -----------CCHHHHHHHHHHHHh------cC-----------------CHHHHHHHHHHH--------HhCC-----
Q 009011 334 -----------PSVITYTIVMHALGK------AK-----------------QINEALKVYEKM--------KSDD----- 366 (546)
Q Consensus 334 -----------p~~~~~~~li~~~~~------~g-----------------~~~~a~~~~~~~--------~~~~----- 366 (546)
--..|+..++...-. .+ +..++.+...++ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 011122222222110 00 111111111111 0001
Q ss_pred ----CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 367 ----CL--PD------TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 367 ----~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
.. |+ ...|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 1234455666777888888888877776532 23455666666677888999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 435 DLCKPDCETYAPLLKMCCRKKRMKVLNF--LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 435 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+ +-++.....+...+.+.|+...|.. ++.++.+.++. +...|-.+...+-+.|+.++|.+.|+...+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 53 3345678889999999999888877 99999998877 8999999999999999999999999988764
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=9.4e-08 Score=88.79 Aligned_cols=252 Identities=16% Similarity=0.141 Sum_probs=128.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+. +..++....+|.......+...+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCCChhHHHHHHHHHHHhCccchH
Confidence 334445677777765554 2222112233344555666677776553 334444333455555544444443333444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTC-FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
.+..-+++....+...+..++.. ....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444433332222212222222 223445567777777666532 24555666667777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 363 KSDDCLPDTSFYSSLIFILS----KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 438 (546)
.+.+ .|.. ...+..++. -.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+.+ +
T Consensus 158 ~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 6643 2322 222333222 233577777777776553 34566677777777777777777777777765543 3
Q ss_pred CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009011 439 PDCETYAPLLKMCCRKKRM-KVLNFLLTHMFKN 470 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~ 470 (546)
-+..+...++.+....|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3455555666655666665 5566666666553
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.5e-05 Score=75.14 Aligned_cols=365 Identities=13% Similarity=0.081 Sum_probs=214.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|...|..+..- -++|-..|..-..+|++.|++++|.+=-.+-.+ - .|.-...|+....++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-l-~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR-L-NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh-c-CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3666677777666421 123556677778888888888877766555555 2 44445677777777777788888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH------HHhhcCCC-----CCHHHHHHHHHHHHhc--------
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF------LEFKDCIP-----LSSQIFNILIHGWCKT-------- 279 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------~~~~~~~~-----~~~~~~~~li~~~~~~-------- 279 (546)
.|.+-.+.. +-+...++.+..++.... .+.+.| ..+. +.| .....|..++..+-+.
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 887766542 344555566666651110 001111 1110 000 0111122222222111
Q ss_pred --CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHhcCChhHHHHH
Q 009011 280 --RKVDDAQKAMKEM-----FQQG-------FSP------------D----------VVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 280 --g~~~~a~~~~~~m-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~a~~l 323 (546)
..+..+..++... ...| ..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1122222221110 0000 111 0 11234455666677788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHH
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL-------IFILSKAGRVKDANEIFED 396 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~ 396 (546)
+....+.. -+..-++....+|...|.+.++...-+...+.|.. ...-|+.+ ..+|.+.++++.|...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88877764 35555666777888888888887777776666533 22333333 3355566778888888877
Q ss_pred HHHCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 397 MKKQGVVPNVLTY-------------------------NTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451 (546)
Q Consensus 397 ~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 451 (546)
.......|+...= ..-...+.+.|++..|++.|.++++.. +-|...|+.-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 6654434433221 111234677889999999999988876 56778888888889
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
.+.|.+..|..-.+...+.++. ....|.--..++....++++|.+.|++..+.. |+..-+.--+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~ 467 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYR 467 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 9999998888888877776443 44455555566666778888888888888664 55544433333
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=0.00012 Score=75.47 Aligned_cols=296 Identities=15% Similarity=0.194 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHH---------------------------HHhc
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRR---------------------------LVRG 210 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~---------------------------~~~~ 210 (546)
.|++.-+.-+.++...+-..+-+++++++.-..+ ...+...-|.++-. ...+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 4445555556666666666666666665543220 11122223333322 2333
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
+-+++|..+|++. ..+..+.+.|+. .-+.++.|.+.-++.. .+.+|..+..+-.+.|.+.+|.+-|-
T Consensus 1062 ~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4444555555443 223333333332 2344455554444332 34567777777777777777765553
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009011 291 EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD 370 (546)
Q Consensus 291 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 370 (546)
+. -|...|..+++...+.|.+++..+++....+..-.|... +.+|-+|++.+++.+.++.+. -|+
T Consensus 1129 ka------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1129 KA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred hc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 33 256667777777777777777777776666665555544 356777777777666554431 255
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKM 450 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 450 (546)
..-...+.+-|...|.++.|.-+|.. +..|..+...+...|++..|.+.-++. .+..||..+-.+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 55556666666666667666665543 334566666666667777766655442 244566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
|...+.+.-| +|...++.....-..-++.-|-..|.+++.+.+++..
T Consensus 1259 Cvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1259 CVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6655544332 2222333334444555555666666666655555543
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=2.6e-05 Score=70.95 Aligned_cols=292 Identities=13% Similarity=0.141 Sum_probs=178.1
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMD-TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT--RKVDDAQ 286 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~ 286 (546)
.-.+++|++++.+.... .|.-...|.-+. +|.+..-.+-+.+++....+.+|.+....|..+....+. |+..+
T Consensus 164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae-- 239 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE-- 239 (557)
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH--
Confidence 34678999999998764 455555555443 566788888888888888888888888777766555443 33222
Q ss_pred HHHHHHH--------------HCC------------CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 009011 287 KAMKEMF--------------QQG------------FSPD-----VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS 335 (546)
Q Consensus 287 ~~~~~m~--------------~~g------------~~~~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (546)
+-.+++. +.+ +-|. +..--.|+-.|.+.++.++|..+.+++.-. .|-
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~ 317 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPY 317 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChH
Confidence 2122221 111 0011 122234555678889999998887765421 222
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009011 336 VITYTIVMH-----ALGKAKQINEALKVYEKMKSDDCLPDT-SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTY 409 (546)
Q Consensus 336 ~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 409 (546)
......+.. -......+.-|.+.|.-.-+.+...|+ .--.++..++.-..++++.+-.++.+..--..-|...+
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 222222221 112222455677777666655544332 22344555666667788888888888765555455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHH
Q 009011 410 NTMISSACARSEEENALKLLQKMEEDLCKPDCETY-APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY-ASLVRGLI 487 (546)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~ 487 (546)
| +.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|+.++-.+.. ..+..+. ..+..-|.
T Consensus 398 N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 398 N-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred H-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 4 678889999999999999877655444 34455 4566788899999988777655433 2233333 34456678
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 488 ESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
+.+.+--|.+.|+++.... |++..|
T Consensus 473 k~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHHhhhHHHccC--CCcccc
Confidence 8888888888888876443 544433
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=2e-07 Score=86.70 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=148.6
Q ss_pred HHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009011 242 LVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 320 (546)
+--.|++..+..-.+ ... ..+.+......+.+++...|+.+.+. .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444677777765444 222 11223344566778888888766543 3443332 55655555444444333444455
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 321 DDTLKEMQEKGCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 321 ~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
..-+++.......+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54444443333332 2233333334566678888888877642 3566677778888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009011 400 QGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD 475 (546)
Q Consensus 400 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 475 (546)
.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.+.. +
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 42 33 344445554432 23578888888887654 4677788888888888888888888888888776654 6
Q ss_pred HHHHHHHHHHHHHcCCh-HHHHHHHHHHHHC
Q 009011 476 AGTYASLVRGLIESGKL-ELACSFFEEMISK 505 (546)
Q Consensus 476 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 505 (546)
..+...++.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 66776777777777777 6677788877754
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=3.2e-05 Score=85.75 Aligned_cols=335 Identities=11% Similarity=-0.001 Sum_probs=209.9
Q ss_pred HHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC------CCCH--HHHHHHHHHH
Q 009011 171 LGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV------EKDT--RALSVLMDTL 242 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~--~~~~~ll~~~ 242 (546)
+...|+++.+..+++.+.... ...+..........+...|++++|..+++...+.-- .+.. .....+...+
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 334566666666665543211 111122223344555678999999999987754210 1111 1222233445
Q ss_pred HccCCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLS-----SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFS-PDVVSYTCFIEHYC 312 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~ 312 (546)
...|++++|...++......+.. ....+.+...+...|++++|...+++.... |.. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 67899999999998865432222 134566777788899999999999887653 111 11234556667788
Q ss_pred hcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEK----GCK--P-SVITYTIVMHALGKAKQINEALKVYEKMKSDD--CLP--DTSFYSSLIFIL 381 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 381 (546)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886642 221 1 22334455566777899999999998875431 112 233445566678
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 009011 382 SKAGRVKDANEIFEDMKKQGVV-PNVLTY-----NTMISSACARSEEENALKLLQKMEEDLCKPDC---ETYAPLLKMCC 452 (546)
Q Consensus 382 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~ 452 (546)
...|++++|.+.+++....... .....+ ...+..+...|+.+.|..++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999999887542111 111111 11224445678999999998776542211111 11345666788
Q ss_pred hcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 453 RKKRMKVLNFLLTHMFKN----DVSM-DAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
..|+.++|...+++.... +... ...++..+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987762 2222 22456667778889999999999999988763
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=7.6e-05 Score=67.74 Aligned_cols=317 Identities=10% Similarity=0.016 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH-HHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL-SVL 238 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l 238 (546)
+..-.--+...+...|++..|+.-|....+ + ++.+-.++..-...|...|+...|+.=|.+..+. +||-..- ..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-~-dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-G-DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-C-CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 334444566677777777777777777766 4 5555555555566677777777777777776653 5664332 222
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
...+.+.|.++.|..-|+.+....|.+... ..++.+.-..++-+. ....+..+.-.|+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~----~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLV----LEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQ 172 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchh----HHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchh
Confidence 344667777777777777766543322110 011111111111111 112233444566677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
.|+..+..+.+- .+-|...|..-..+|...|++..|+.-++...+.. ..++.++.-+-..+...|+.+.++...++..
T Consensus 173 ~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777766666665 23355566666666777777777666655555443 2344455555566666677777766666666
Q ss_pred HCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHH
Q 009011 399 KQGVVPNVLT----YNTM---------ISSACARSEEENALKLLQKMEEDLCKPDCE---TYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 399 ~~~~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~ 462 (546)
+. .||... |-.+ +......+++.++++-.+...+........ .+..+-.++...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 53 344322 1111 112344566666666666666553221122 23334445556667777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 463 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
...+..+.... |+.++.--..+|.-...+++|+.-|+...+.
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777664433 4677777777777777777777777776654
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=9.5e-05 Score=76.12 Aligned_cols=330 Identities=10% Similarity=0.104 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCCHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG--VEKDTRAL 235 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~ 235 (546)
.|...|+.++.- .. .--+++.++..+.. +...++...+..+.++...+-+.+-+++++++.-.+ +..+...-
T Consensus 950 ~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 455666655521 11 11234455544422 134567777788999999999999999999986322 12222223
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF------------------ 297 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------ 297 (546)
+.|+-...+. +.....+..+++..-..++ +.......+-+++|..+|++..-.+-
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 3444333333 3333444444443311122 23334445555666666555431000
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009011 298 ---SPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374 (546)
Q Consensus 298 ---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 374 (546)
--....|..+..+-.+.|...+|.+-|-+. -|+..|..+++.+.+.|.+++-.+++....+..-+|...
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id-- 1169 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID-- 1169 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--
Confidence 002233444444444444444444333221 133445555555555555555555444444433233222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454 (546)
Q Consensus 375 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 454 (546)
+.||-+|++.+++.+.++++. .|+......+..-|...|.++.|.-+|.. ...|..|...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHH
Confidence 344455555555444333321 14444444444444445555544444432 22344555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHH
Q 009011 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 455 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
|++..|...-++. .+..+|..+-.+|...+.+.-| +|....+.....-...+++.|...|-+++...++
T Consensus 1234 geyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 5555554433322 1445555555555544443322 1221122223333444555555555555544444
Q ss_pred H
Q 009011 535 K 535 (546)
Q Consensus 535 ~ 535 (546)
+
T Consensus 1303 E 1303 (1666)
T KOG0985|consen 1303 E 1303 (1666)
T ss_pred H
Confidence 3
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=6.8e-06 Score=82.39 Aligned_cols=331 Identities=12% Similarity=0.105 Sum_probs=200.4
Q ss_pred CCHHHHHHHHH--HHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-C-------C
Q 009011 159 HTPEMYNTMVD--VLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-G-------V 228 (546)
Q Consensus 159 ~~~~~~~~ll~--~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~ 228 (546)
.|..|-.++++ .|...|+.+.|.+-.+-++. ...|..+.+.+.+..+.+-|.-.+-.|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 56666666664 47778888888877776654 567888888888888777776555555321 1 1
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 229 -EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 229 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
.++ .+-..+.......|.+++|+.+|.+.+. |..|=+.|-..|.+++|.++-+.=...- =-.||...
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 121 2222223334577888999988887764 5566677778888888887765432211 12355555
Q ss_pred HHHHHhcCChhHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009011 308 IEHYCREKDFRKVDDTLKEM----------QEKG---------CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL 368 (546)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m----------~~~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 368 (546)
...+-..+|.+.|++.|++. .... -..|...|......+-..|+++.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 55666677777777777652 1110 122445555566666677888888888876654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLL 448 (546)
Q Consensus 369 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 448 (546)
|-+++...|-.|+.++|-.+-++- -|......+.+.|-..|++.+|..+|.+.. +|...|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAI 1000 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAI 1000 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHH
Confidence 345666677778888888776653 255566667888888888888888887654 233333
Q ss_pred HHHHhcCC---------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHC
Q 009011 449 KMCCRKKR---------------MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE--------EMISK 505 (546)
Q Consensus 449 ~~~~~~g~---------------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~ 505 (546)
+.|-..+- .-.|..+|++. |. -...-+..|-+.|.+.+|+++-= +++.+
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 33322221 22223333321 11 12233455667777776665421 12222
Q ss_pred --CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 506 --GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 506 --g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.-..|+...+...+.++...+++.|..++-..+++
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22345666777777777777777777776655543
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=1.1e-05 Score=85.45 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=185.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK-GCKP---SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS 375 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (546)
+...|-..|......++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888888999999999999988764 1111 12356666666666778889999999998863 2356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 009011 376 SLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD---CETYAPLLKMCC 452 (546)
Q Consensus 376 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~ 452 (546)
.|...|.+.+.+++|.++++.|.++- .-....|...+..+.++++-+.|..++.+..+. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 99999999999999999999998753 257789999999999999999999999998875 343 344555666677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcChhhHH
Q 009011 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS--TYKMLEEKLEKKRLGNAK 530 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a 530 (546)
+.|+.+++..+|+......++ -...|+.+|+.-.++|+.+.+..+|++.+..++.|... .|...+..=...|+.+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 899999999999999887655 57799999999999999999999999999999887653 455556555556777777
Q ss_pred HHHHHHHHHH
Q 009011 531 ERINKLLAHA 540 (546)
Q Consensus 531 ~~~~~~m~~~ 540 (546)
+.+-.+..++
T Consensus 1691 E~VKarA~EY 1700 (1710)
T KOG1070|consen 1691 EYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00022 Score=69.47 Aligned_cols=362 Identities=11% Similarity=0.098 Sum_probs=214.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH--
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV-- 243 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-- 243 (546)
+=++.+...|++++|.+....+.. . .+.+...+..-+-++.+.+++++|+.+.+.-.. ...+...+ +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~-~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILS-I-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh-c-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHH
Confidence 446788889999999999999998 4 577788888888899999999999966554321 11111111 345555
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------------------
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP------------------------ 299 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------------------------ 299 (546)
+.+..++|...++.. .+.+..+...-.+.+.+.|++++|.++|..+.+.+.+-
T Consensus 91 rlnk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 678999999888732 34455567777888999999999999999998765321
Q ss_pred ---CHHHHHHHH---HHHHhcCChhHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 009011 300 ---DVVSYTCFI---EHYCREKDFRKVDDTLKEMQEKG-------CKPSVI-------TYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 300 ---~~~~~~~li---~~~~~~g~~~~a~~l~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g~~~~a~~~~ 359 (546)
...+|..+. ..+...|++.+|+++++...+.+ -.-+.. .-.-+..++-..|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 011233222 34556788888888888773221 111111 1112334556778888888888
Q ss_pred HHHHhCCCCCCHHHH----HHHHHHHHhcC---------------------------------------------CHHHH
Q 009011 360 EKMKSDDCLPDTSFY----SSLIFILSKAG---------------------------------------------RVKDA 390 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~----~~li~~~~~~g---------------------------------------------~~~~A 390 (546)
..+.+.+. +|.... |.|+.+-.... ..+.+
T Consensus 248 ~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 88887753 333221 11111100000 00000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH---
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSA--CARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT--- 465 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--- 465 (546)
.++-.... +..|.. .+..++..+ ++...+.++.+++...-+..-.-.....-..+......|+++.|.+++.
T Consensus 327 r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 327 RELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 00000000 112222 223333322 2223466677777666554211123444555666778999999999998
Q ss_pred -----HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcChhhHHHHHH
Q 009011 466 -----HMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK--GIVPY----HSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 466 -----~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
.+.+.+..| .+...++..+.+.++.+.|..++.+.+.. .-.+. ..++..+...-.+.|..++|..++
T Consensus 404 ~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 404 ESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 555544443 45566777778888877777777776532 11111 223444444446679999999999
Q ss_pred HHHHHHhh
Q 009011 535 KLLAHAKE 542 (546)
Q Consensus 535 ~~m~~~~~ 542 (546)
+++.+...
T Consensus 482 eel~k~n~ 489 (652)
T KOG2376|consen 482 EELVKFNP 489 (652)
T ss_pred HHHHHhCC
Confidence 98877543
No 99
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=1.5e-05 Score=75.25 Aligned_cols=141 Identities=4% Similarity=-0.079 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG-RYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
+++.+-.++...++.++|+.+.+++.+ . .+.+..+|+..-..+...| .++++++.++++.+.. +.+..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~-l-nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR-L-NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH-H-CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 445555555566666666666666665 2 4444555554444444444 3456666666555433 3333344433333
Q ss_pred HHccCC--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 242 LVKGNS--VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 242 ~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
+.+.|. .+++..+++++.+..+.+..+|+...-.+...|+++++++.++++++.++. +...|+..
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence 333333 134444444444444455555555555555555555555555555544333 33444433
No 100
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=2.2e-05 Score=74.11 Aligned_cols=220 Identities=8% Similarity=0.030 Sum_probs=145.4
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN-SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV--DDA 285 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a 285 (546)
..++.++|+.++.++.+.. +-+..+|+....++...| +++++...++++....|.+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 3467778888888877643 334445555555556666 567888888887777777777777666666666653 567
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHH
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA---KQ----INEALKV 358 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~a~~~ 358 (546)
..+++++.+...+ +..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++..+.
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 7777777776554 6777877777777788888888888888877654 555565555554443 22 2456666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 009011 359 YEKMKSDDCLPDTSFYSSLIFILSKA----GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS-------------- 420 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------------- 420 (546)
..+++... +-|...|+.+...+... ++..+|.+.+.+..+.++ .+......|+..|+...
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 66666654 34667777777666662 344567777777665442 35666777777776532
Q ss_pred ----CHHHHHHHHHHHH
Q 009011 421 ----EEENALKLLQKME 433 (546)
Q Consensus 421 ----~~~~A~~~~~~m~ 433 (546)
..++|.++++.+.
T Consensus 284 ~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 284 EELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccHHHHHHHHHHHH
Confidence 3467888888884
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.3e-05 Score=74.29 Aligned_cols=364 Identities=16% Similarity=0.121 Sum_probs=239.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccC
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD-TRALSVLMDTLVKGN 246 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g 246 (546)
-......|+++.|+..|-+... - .+.+...|..-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~-l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIM-L-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHc-c-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 3456778999999999999888 4 5668999999999999999999998877777654 555 568999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHHhc------
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA---QKAMKEMFQQ---GFSPDVVSYTCFIEHYCRE------ 314 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~---g~~~~~~~~~~li~~~~~~------ 314 (546)
++++|...|.+-.+..|.+...++-+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999998888888999999998888221100000 0011111110 0001122333333332221
Q ss_pred ----CChhHHHHHHHH-----HHHcC-------CCC----------------------CHHHHHHHHHHHHhcCCHHHHH
Q 009011 315 ----KDFRKVDDTLKE-----MQEKG-------CKP----------------------SVITYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 315 ----g~~~~a~~l~~~-----m~~~g-------~~p----------------------~~~~~~~li~~~~~~g~~~~a~ 356 (546)
..+..+.-.+.. +...| ..| -..-...+..+..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111111111110 00011 111 0112345666777788889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTM-------ISSACARSEEENALKLL 429 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~ 429 (546)
+-+....+.. .+..-++....+|...|.+.++...-+...+.|-. ...-|+.+ ..+|.+.++.+.|...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999888875 46667777888899999888888777776665532 22233333 33566678889999998
Q ss_pred HHHHHCCCCCCHHHH-------------------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 430 QKMEEDLCKPDCETY-------------------------APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 430 ~~m~~~~~~p~~~~~-------------------------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
++.......|+..+= ..-...+.+.|++..|...+.++++.++. |...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHH
Confidence 887655444443221 11133566789999999999999998866 8999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 485 GLIESGKLELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
+|.+.|.+..|++-.+..++.. |+. .-|..=..++....+++.|.+.+.+-.+..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999888887663 443 233333444445566667766666655443
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.6e-05 Score=84.30 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL-----SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD-VV 302 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~ 302 (546)
+.....|...|......++.++|.+++++....+.+ -..+|-++++.-..-|.-+...++|++..+. .| ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 445566777777777888888888888877664322 2345777777777778778888888888775 23 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFIL 381 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 381 (546)
.|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.+..+.-.. -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 57778888888888888888888888762 235567888888888888888888888887764211 1344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHH
Q 009011 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC--ETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 382 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~ 459 (546)
.+.|+.+.+..+|+.....-. .-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...+..-...|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 788888888888888776432 25567888888888888888888888888887766553 345555655555555554
Q ss_pred HHHHHHHH
Q 009011 460 LNFLLTHM 467 (546)
Q Consensus 460 a~~~~~~m 467 (546)
+..+=.++
T Consensus 1690 vE~VKarA 1697 (1710)
T KOG1070|consen 1690 VEYVKARA 1697 (1710)
T ss_pred HHHHHHHH
Confidence 44443333
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=0.00015 Score=65.97 Aligned_cols=296 Identities=11% Similarity=0.045 Sum_probs=179.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCC
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT-CFIEHYCREKD 316 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~ 316 (546)
+...+...|++..|+.-|....++.|.+-.++.--...|...|+-..|+.-+++.++. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 3344444455555555554444444444444444444455555555555444444443 33322111 11123445555
Q ss_pred hhHHHHHHHHHHHcCCCC------------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQEKGCKP------------S--VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p------------~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 382 (546)
+++|..=|+.+.+..... . .......+..+.-.|+...|+.....+.+.. +.|...|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 555555555554432110 0 0112233445667899999999999999874 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HH---HH------H
Q 009011 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY----AP---LL------K 449 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~---ll------~ 449 (546)
..|++..|..=++...+..-. +..++--+-..+...|+.+.++...++-.+. .||.... .. +. .
T Consensus 201 ~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred hcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877664433 4555555667778889999999888887775 4665321 11 11 1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 009011 450 MCCRKKRMKVLNFLLTHMFKNDVSMDAGTY---ASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEKKR 525 (546)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 525 (546)
.....+++.++.+-.+...+..+......| ..+-.++...|++.+|++...+..+ +.|+ ..++.-=..+|.-..
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhH
Confidence 234567788888888888876655333333 3445566678999999999999884 4466 555555566777667
Q ss_pred hhhHHHHHHHHHHHHh
Q 009011 526 LGNAKERINKLLAHAK 541 (546)
Q Consensus 526 ~~~~a~~~~~~m~~~~ 541 (546)
+++.|+.=++.....+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777766665555443
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=2e-05 Score=78.20 Aligned_cols=325 Identities=17% Similarity=0.156 Sum_probs=185.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
|++.-...-.+-+..+...|+-+.|-++-+. .... -..|+.|.+.|.+..|......-. .+..|....
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk~s------dgd~----laaiqlyika~~p~~a~~~a~n~~--~l~~de~il 651 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELKES------DGDG----LAAIQLYIKAGKPAKAARAALNDE--ELLADEEIL 651 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhccc------cCcc----HHHHHHHHHcCCchHHHHhhcCHH--HhhccHHHH
Confidence 4433333445556666777777776554221 1111 123788888888887766542211 124455555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhc-----------------------CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKD-----------------------CIPLSSQI-FNILIHGWCKTRKVDDAQKAMKE 291 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~ 291 (546)
..+..++.+..-+++|-.+|+++.. .+|..+.. -......+...|+++.|...|-+
T Consensus 652 ~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 5555555554444444444444432 11111111 11122222333333333333322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 009011 292 MFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT 371 (546)
Q Consensus 292 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 371 (546)
.. .....+.+......|.+|+.+++.+++.... ..-|..+..-|+..|+++.|.++|-+.-
T Consensus 732 a~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-------- 792 (1636)
T KOG3616|consen 732 AN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-------- 792 (1636)
T ss_pred hh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc--------
Confidence 21 1122345566678888888888888876432 2346777888889999999988886532
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 372 SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 451 (546)
.++-.|.+|.+.|++++|.++-++.. |.......|.+-..-+-.+|++.+|.++|-.+. .|+ ..|..|
T Consensus 793 -~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmy 860 (1636)
T KOG3616|consen 793 -LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMY 860 (1636)
T ss_pred -hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHH
Confidence 34557788999999999988877665 434455666666666777888888887775442 344 245667
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHH
Q 009011 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKE 531 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 531 (546)
-+.|..+...++.++-... .-..|...+..-|-..|+...|..-|-+.. -|...++.|..++.|++|.
T Consensus 861 dk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~day 928 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAY 928 (1636)
T ss_pred HhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHH
Confidence 7777777777666543321 122344555566666777777776665442 3445556666666666666
Q ss_pred HHHH
Q 009011 532 RINK 535 (546)
Q Consensus 532 ~~~~ 535 (546)
++-+
T Consensus 929 riak 932 (1636)
T KOG3616|consen 929 RIAK 932 (1636)
T ss_pred HHHh
Confidence 5543
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.0005 Score=66.43 Aligned_cols=375 Identities=11% Similarity=0.083 Sum_probs=211.3
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 009011 157 YMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS 236 (546)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 236 (546)
.+-|..+|+.||.-+... .++++++.++++.. . .+.+...|..-|..-...++++....+|.+.... ..+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~-~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN-V-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc-c-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 455777888888877776 88888888888876 3 6667777777788888888888888888887654 23344444
Q ss_pred HHHHHHHc-cCCHHH----HHHHHHHhhcC---CCCCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 237 VLMDTLVK-GNSVEH----AYKVFLEFKDC---IPLSSQIFNILIHG---------WCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 237 ~ll~~~~~-~g~~~~----a~~~~~~~~~~---~~~~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
.-+.---+ .|+... ..+.|+-.... .+.+..+|+..+.. |....+++...+++.++...-+.-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 43332111 222222 22223222221 22233345444433 333445566667777766532110
Q ss_pred ------CHHHHHHHHHHH-------HhcCChhHHHHHHHHHHH--cCCCCCHH---------------HHHHHHH-----
Q 009011 300 ------DVVSYTCFIEHY-------CREKDFRKVDDTLKEMQE--KGCKPSVI---------------TYTIVMH----- 344 (546)
Q Consensus 300 ------~~~~~~~li~~~-------~~~g~~~~a~~l~~~m~~--~g~~p~~~---------------~~~~li~----- 344 (546)
|-.+|..=|+-. -+...+..|.++++++.. .|...+.. .|..+|.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111111111100 011233444444444332 11110000 0111111
Q ss_pred --------------------------------------------HHHhcCC-------HHHHHHHHHHHHhCCCCCCHHH
Q 009011 345 --------------------------------------------ALGKAKQ-------INEALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 345 --------------------------------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~ 373 (546)
.+...|+ .+++..+++.....-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111121 2233333333332211122223
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 009011 374 YSSLIFILSKA---GRVKDANEIFEDMKKQG-VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP-DCETYAPLL 448 (546)
Q Consensus 374 ~~~li~~~~~~---g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 448 (546)
|..+...--.. ...+...+.++++...- ..|+ .+|...++...+...++.|..+|.+..+.+..+ ++..+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 32222211111 12444555555555432 2333 467788888888888999999999999887666 666777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCh
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH--STYKMLEEKLEKKRL 526 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~ 526 (546)
.-+| .++.+.|.++|+--.+.- .-+...-...+.-+...|+-..|..+|++....++.|+. .+|..++..=..-|+
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 7655 578889999998766532 223445567788888999999999999999988666654 679999988888899
Q ss_pred hhHHHHHHHHHHH
Q 009011 527 GNAKERINKLLAH 539 (546)
Q Consensus 527 ~~~a~~~~~~m~~ 539 (546)
.+.+.++.+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887753
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=8.8e-06 Score=78.79 Aligned_cols=251 Identities=12% Similarity=0.088 Sum_probs=156.5
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
+.+.|++.+|.-.|+......|.+...|.-|.......++-..|+..+.+..+..+. +....-.|.-.|...|.-.+|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 456666777777777766666777777777777777777777777777777665433 4555666666677777777777
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 322 DTLKEMQEKGCK--------PSVITYTIVMHALGKAKQINEALKVYEKMKS-DDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 322 ~l~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
+.++..+....+ ++...-.. ..+..........++|-++.. .+..+|..++..|--.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777666543210 00000000 112222334444555555443 3333667777777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh--
Q 009011 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC-ETYAPLLKMCCRKKRMKVLNFLLTHMFK-- 469 (546)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~-- 469 (546)
.|+..+.... -|...||.|...++...+.++|+.-|.+..+. +|+. .....|.-.|...|.+++|...|-.++.
T Consensus 452 cf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8887776442 26677888888888888888888888887774 5553 2333344467788888888777765543
Q ss_pred -C------CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009011 470 -N------DVSMDAGTYASLVRGLIESGKLELACSF 498 (546)
Q Consensus 470 -~------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 498 (546)
. ...++..+|..|=.++.-.++.|-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1223456777777777777777655443
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=4.4e-08 Score=57.94 Aligned_cols=32 Identities=34% Similarity=0.736 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 296 g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444555555555555554444444444
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=9.4e-06 Score=78.62 Aligned_cols=256 Identities=10% Similarity=0.034 Sum_probs=185.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
..-+.+.|++.+|.-.|+..+...+. +...|..|-..-...++-..|+..+++..+.... |....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34466889999999999999888654 7889999999999999999999999998887433 667777888889999988
Q ss_pred HHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 353 NEALKVYEKMKSDDCL--------PDTSFYSSLIFILSKAGRVKDANEIFEDM-KKQGVVPNVLTYNTMISSACARSEEE 423 (546)
Q Consensus 353 ~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~ 423 (546)
..|++.++.-.....+ ++...-.. ..+.....+....++|-++ .+.+..+|......|--.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8999888876543211 00000000 1222233344445555544 44554577888888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 424 NALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 424 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
+|.+.|+.+.... +-|..+||.|...++...+.++|...|.+.++..+. -+.+...|.-.|...|.+++|.+.|-+.+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999998864 445678999999999999999999999999986554 23455556777889999999999887755
Q ss_pred HC---------CCCCCHHHHHHHHHHHHhcChhhHHHHHH
Q 009011 504 SK---------GIVPYHSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 504 ~~---------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
.. +-.++..+|..|-.++...++.+-+.+..
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 32 12234567777777777777777555443
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6.3e-08 Score=57.27 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 471 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
|+.||..+|+.+|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=8.9e-05 Score=74.00 Aligned_cols=214 Identities=10% Similarity=0.086 Sum_probs=123.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..+...+.+.|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+......
T Consensus 402 ~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 444555666666666666665543 3556666666666666666666666552 456666655555554444
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 455666555543322 11111111223566666666666655543 2345556666666666667777766666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 396 DMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
...... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.++.|.+.+..+..
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 665432 1234567777777777777777777777666655 33344455555556666777777766666655
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.7e-05 Score=69.52 Aligned_cols=159 Identities=12% Similarity=0.097 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
...-..+...|+-+.+..+....... ...|.......+....+.|++..|...+.+....-|+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455555556666665555554322 24445555556666667777777777777666666667777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
++++|..-|.+..+..+. +...++.+.-.|.-.|+++.|..++......+.. |...-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777776666665332 3444555555666667777777777666655433 44455556666666677777666654
Q ss_pred HH
Q 009011 361 KM 362 (546)
Q Consensus 361 ~~ 362 (546)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=3.4e-05 Score=81.16 Aligned_cols=240 Identities=10% Similarity=0.124 Sum_probs=130.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT-RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNI 271 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (546)
.+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~ 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------N 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------h
Confidence 3455666777777777777777777777755543 2332 2233333344444444433322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ 351 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 351 (546)
++.......++.-...+...|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-|....|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222223333333333333444332 123355566666777777777777777777665 33566666666666666 6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQK 431 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 431 (546)
+++|.+++.+.... |...+++.++.++|.++.... |+ +.+.-..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHH
Confidence 77777666665543 445556666666666666532 22 11222222222
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 432 MEED-LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487 (546)
Q Consensus 432 m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 487 (546)
+... |..--..++-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2221 11222345555666677777788888888888876655 5556666666664
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.55 E-value=1.1e-05 Score=70.62 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+....+..+....++|++..|+..|++..... ++|..+++.+.-+|.+.|+++.|..-|.+..+-.+.+....|.|.-.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence 33344444444444455555555554444322 44444445444445555555555544444444444444444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (546)
+.-.|+.+.|+.++......+.. |...-..+.......|++++|.++..
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555555555554444443222 33333444444444455555544443
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00011 Score=64.45 Aligned_cols=246 Identities=12% Similarity=0.073 Sum_probs=153.8
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV-DD 322 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a-~~ 322 (546)
-.|++..+...-..... .+.+...-.-+-+.|...|...... .++.... .|.......+.......++.++. -+
T Consensus 20 Y~Gnyq~~ine~~~~~~-~~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSS-SKTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HhhHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 34555555554443332 1234444555666777777654332 2333222 33444444443333334444433 34
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+.+.+.......+......-...|++.|++++|++..+... +......=+..+.+..+++-|...+++|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 44555555444454445555667888899999988887621 3333444455677888889999999999874
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 403 VPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
-+..+.+.|..++.+ .+....|.-+|++|.+. ..|+..+.+....++...|++++|..++++....... +..+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 366677777777654 45678888899998764 4788888888888888999999999999998887766 6666
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHHC
Q 009011 479 YASLVRGLIESGKLEL-ACSFFEEMISK 505 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~-A~~~~~~m~~~ 505 (546)
...+|..-...|...+ -.+.+.+++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 6666666555666544 45566666543
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=2.6e-05 Score=81.20 Aligned_cols=149 Identities=10% Similarity=-0.010 Sum_probs=130.4
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 155 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
..|.++...+-.|..+..+.|.+++|..+++...+ . .|.+......+...+.+.+++++|+..+++..... +.+...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ-R-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-h-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 56888899999999999999999999999999998 4 67788899999999999999999999999998764 556677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 235 LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 235 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
...+..++.+.|+.++|..+|+++....|.+..++..+...+.+.|+.++|...|++..+.-- +....|+..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 788888899999999999999999887788899999999999999999999999999987521 234455444
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=1.5e-05 Score=72.73 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC-HHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-KD-TRA 234 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~ 234 (546)
......+-.+...+.+.|+++.|...|+++....+.. ....++..+...+.+.|++++|+..|+++.+.... +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4456677888888999999999999999988733111 12357778889999999999999999999764311 11 124
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 235 LSVLMDTLVKG--------NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306 (546)
Q Consensus 235 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 306 (546)
+..+..++... |+.++|.+.++.+....|.+...+..+..... ... .. ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 44444555443 67888888888887766666555433322111 000 00 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEKGC--KPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
+...|.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888999999999999887632 223567888889999999999999988888765
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00013 Score=64.06 Aligned_cols=251 Identities=16% Similarity=0.143 Sum_probs=151.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
++-+.-.|++..++..-...... +.+...-..+-++|...|.... ...+++.+..+.....-.+......-++.+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~---~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQI---VISEIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccc---cccccccccCChHHHHHHHHHHhhCcchhH
Confidence 44555567777766655544322 2444444555566666665442 222333333333333333333333344444
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 284 DAQ-KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 284 ~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
+.. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 334444444333333333333456888899999988877621 2333333445566778889999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 363 KSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 438 (546)
.+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-...++...|++++|..++++..... .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 8753 55666666666654 4568889999999986 356888888888888889999999999999988775 4
Q ss_pred CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009011 439 PDCETYAPLLKMCCRKKRM-KVLNFLLTHMFKN 470 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~ 470 (546)
-++.+...++-+-...|.. +...+.+...+..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4566766666555555554 4445556665554
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=2e-05 Score=71.96 Aligned_cols=187 Identities=12% Similarity=0.039 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHH---
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT---RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ--- 267 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 267 (546)
......+..+...+.+.|++++|...|+++.+.. +.+. .++..+..++...|++++|...++++.+..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4457778888889999999999999999987643 2222 46677788899999999999999998776554443
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 268 IFNILIHGWCKT--------RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 268 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
++..+..++.+. |+.++|.+.++++....+. +...+..+..... ... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 455566666554 7788899999988876332 2222222211100 000 000 012
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 340 TIVMHALGKAKQINEALKVYEKMKSDDC--LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 340 ~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
..+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456678999999999999999987632 224578889999999999999999999988764
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=1.7e-05 Score=78.97 Aligned_cols=222 Identities=15% Similarity=0.143 Sum_probs=180.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 009011 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI 341 (546)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (546)
.||--..--.+...+.+.|-..+|..+++++. .|.-.|.+|+..|+..+|..+..+-.+ -+||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 44555556778889999999999999998875 467778899999999999999988887 4788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 342 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
+.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +.-..+|-..-.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888877777788888888765432 22223333345789999999999877643 2356788888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009011 422 EENALKLLQKMEEDLCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 500 (546)
+..|.+.|..-... .|| ...|+.+-.+|.+.|+-.+|...+++..+.+.. +-.+|...+....+.|.+++|.+.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999988765 455 578999999999999999999999999998744 66788888889999999999999999
Q ss_pred HHHHC
Q 009011 501 EMISK 505 (546)
Q Consensus 501 ~m~~~ 505 (546)
++.+.
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 88764
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=4.2e-05 Score=75.96 Aligned_cols=294 Identities=15% Similarity=0.158 Sum_probs=176.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
.+.++.+...|+-++|-++-+ .+..+ ...+..|.+.|....|......-. .+..|..+...+..++.+..
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~--------sdgd~-laaiqlyika~~p~~a~~~a~n~~-~l~~de~il~~ia~alik~e 662 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKE--------SDGDG-LAAIQLYIKAGKPAKAARAALNDE-ELLADEEILEHIAAALIKGE 662 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhcc--------ccCcc-HHHHHHHHHcCCchHHHHhhcCHH-HhhccHHHHHHHHHHHHhhH
Confidence 344667777788777765421 11122 234567888888777766542111 12234444444444444444
Q ss_pred CHHHHHHHHHHHHHC----------------------CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 009011 281 KVDDAQKAMKEMFQQ----------------------GFSPDVVSY-TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVI 337 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~----------------------g~~~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (546)
-+++|-++|+++..- .++..+++. ...-..+...|+++.|...|-+..
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------- 733 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------- 733 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------
Confidence 444444444444320 000011110 011122233344444444333221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 417 (546)
.....+.+.....++.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|.+.- .++-.|..|.
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~ 802 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYG 802 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHh
Confidence 122345566677889999999998887642 34567788899999999999999997642 3556788899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 009011 418 ARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 497 (546)
+.|+++.|.++-++.. |.......|..-..-.-..|++.+|.+++-.+.+ |+ .-|..|-+.|..++.++
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHH
Confidence 9999999999877653 2233445566666667788999999888755432 33 34788889999999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 498 FFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 498 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
+.++-... --..|...+..-|...|+.++|++-+-...
T Consensus 872 lv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 872 LVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 88765311 123455666777777788777776554443
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.9e-05 Score=69.35 Aligned_cols=119 Identities=6% Similarity=0.117 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW-CKTRK--VDDAQ 286 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~ 286 (546)
.++.++++..++...+.. +.|...|..+...|...|+.++|...|++.....|.+..++..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555554433 455555566666666666666666666655555555555555555542 44444 35666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
+++++..+.... +..++..+...+.+.|++++|...|+.+.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666555443 4455555555555666666666666665554
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=4.4e-05 Score=67.03 Aligned_cols=154 Identities=9% Similarity=0.143 Sum_probs=108.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
+..|...|+++.+....+.+.. |. ..+...++.+++...++......|.+...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 4567777887776555433321 10 01123555667777777776677888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEH-YCREKD--FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
+|...|++....... +...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888887554 66677777665 356666 48888888888887544 66777778888888888888888888
Q ss_pred HHHhCCCCCCHH
Q 009011 361 KMKSDDCLPDTS 372 (546)
Q Consensus 361 ~~~~~~~~~~~~ 372 (546)
++.+.. +|+..
T Consensus 169 ~aL~l~-~~~~~ 179 (198)
T PRK10370 169 KVLDLN-SPRVN 179 (198)
T ss_pred HHHhhC-CCCcc
Confidence 888765 34443
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.00087 Score=67.91 Aligned_cols=201 Identities=15% Similarity=0.198 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
|.++++..|-.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+... +...|+.|-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 4444444445555555544433321 444555566667677777777776665432 2223332221
Q ss_pred cC---------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHCC--CC
Q 009011 349 AK---------------QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED--------MKKQG--VV 403 (546)
Q Consensus 349 ~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~--~~ 403 (546)
.+ +.-.|-++|++. |.. +...+..|-++|.+.+|+++--+ ++... ..
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 11 122222333321 111 12234457777777777665321 11222 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHH----H
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSMDAG----T 478 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~----~ 478 (546)
.|+...+....-++.+.++++|..++-...+ |...+.. |+..++....++-+.|.- ++-.|+.. .
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 3556666666677777788888877765543 3333333 333444444444444432 22334433 4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 009011 479 YASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
...+...|.++|.+..|.+-|.+.
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhh
Confidence 556667788889888888777665
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=0.00016 Score=75.49 Aligned_cols=183 Identities=10% Similarity=0.120 Sum_probs=139.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
.+.+...+-.|.....+.|++++|..+++...+.. +.+......+..++.+.+++++|...+++.....|.+....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45568889899999999999999999999998752 44456677888889999999999999999998889999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
..++.+.|+.++|..+|+++...+. -+..++..+..++-..|+.++|...|+...+.. .+....|+..+ +++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 9999999999999999999998543 257788888889999999999999999988762 33445555443 234
Q ss_pred HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc
Q 009011 353 NEALKVYEKMKSDD----CLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 353 ~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 384 (546)
..-...++.+.-.+ .+....+...+|..|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 44455565554332 223344555666666654
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.38 E-value=0.0012 Score=68.55 Aligned_cols=183 Identities=9% Similarity=0.008 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+...++..|..+.+. -.-=...|..|...|....+...|.+-|+...+ - +..+..........|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-L-Datdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-L-DATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CchhhhhHHHHHHHhhccccHHHHHHH
Confidence 444455555444321 112235788899999998899999999999887 4 667778888899999999999999988
Q ss_pred HHHhhhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 220 FRGMKKYG-VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 220 ~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.-..-+.. ...-..-+..+.-.+.+.++...+..-|+......|.|...|..+..+|..+|.+..|.++|++.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 33322211 011122233344557788999999999998888889999999999999999999999999999887652
Q ss_pred CCHHHHHH--HHHHHHhcCChhHHHHHHHHHHH
Q 009011 299 PDVVSYTC--FIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 299 ~~~~~~~~--li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
|+ .+|.. ....-+..|.+.+++..+.....
T Consensus 627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 22322 22345677888888888777654
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00043 Score=66.24 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 009011 270 NILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS-VITYTIVMHALGK 348 (546)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~ 348 (546)
.-....+...|+.++|+..++.+...-+. |...+....+.+.+.++.++|.+.++.+... .|+ ....-.+..++.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 33334444555555565555555544221 3333344445555556666666655555554 222 3333444555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 349 AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
.|++.+|+.+++...... +.|...|..|..+|...|+..++..-..+
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 666666665555555443 34555556666666666655555544443
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=0.00015 Score=76.41 Aligned_cols=240 Identities=10% Similarity=0.089 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 230 KDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309 (546)
Q Consensus 230 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 309 (546)
.+...+..|+..+...+++++|.++.+......|.....|..+...+.+.++.+++..+ . ++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 34556677777777788888888887766666666666666666666666665555444 2 222
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+|+++.+.+ +-|..+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2333344444444444554432 234467778888888888888888888888877 55788888888888888 8888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 390 ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 390 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|.+++.+.... +...+++..+.++|.++.+.. +-+...|..+++.....
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~--------------- 216 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH--------------- 216 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh---------------
Confidence 88888777653 555668888888888887763 22223333333222221
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
.+..--..++-.+...|-..++++++..+++...+..- -|.....-++.+|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 12223445666677778889999999999999997642 25566777777775
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=6.1e-05 Score=62.47 Aligned_cols=95 Identities=13% Similarity=-0.075 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
+......+.+.|++++|...|+...... +.+..++..+..++...|++++|...|+......|.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344556666666666666666666543 445566666666666666666666666666665666666666666666666
Q ss_pred CCHHHHHHHHHHHHHC
Q 009011 280 RKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~ 295 (546)
|+.++|...|+.....
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666654
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=3.6e-05 Score=63.83 Aligned_cols=109 Identities=6% Similarity=-0.147 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
+..+...+...|++++|...|+.... . .+.+...|..+...+.+.|++++|+..|+...+.. +.+..++..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM-A-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44567788899999999999999987 4 67889999999999999999999999999998864 678889999999999
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
..|+.++|...|+......|.+...+......
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999888777777776554443
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0011 Score=58.04 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=96.1
Q ss_pred CChHHHHHHHHHhhh---CC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 211 GRYDDAVEAFRGMKK---YG-VEKDTRA-LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 211 g~~~~A~~~~~~m~~---~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...+|.+..+--.-.-.+-..|.+++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 356666666666532 23 3444443 334444555566666666666666665655544433333334445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
.++++.+.+..+. |.+++--=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 6666666655422 4444444444444455555555555555544 3335666666666666666666666666666544
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 009011 366 DCLPDTSFYSSLIFILSKAG---RVKDANEIFEDMKK 399 (546)
Q Consensus 366 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 399 (546)
. |.+...+..+.+.+.-.| +++-|.+.|.+..+
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 223333333333332222 34445555555554
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0014 Score=57.34 Aligned_cols=170 Identities=11% Similarity=0.046 Sum_probs=106.4
Q ss_pred CCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 157 YMHTPE-MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 157 ~~~~~~-~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
..++.. +|..++-+....|+.+.|...++.+..+ .+.+......-.-.+-..|++++|+++|+.+.+.+ +.|..++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 444443 3666777777788888888888887763 33333332222333445678888888888887765 5666666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..=+...-..|+.-+|.+-+....+.++.|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.|
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHh
Confidence 665656666666667777777777777778888888888888888888888777777665322 2333333333333222
Q ss_pred ---ChhHHHHHHHHHHHc
Q 009011 316 ---DFRKVDDTLKEMQEK 330 (546)
Q Consensus 316 ---~~~~a~~l~~~m~~~ 330 (546)
+.+.+.++|.+..+.
T Consensus 203 g~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 203 GAENLELARKYYERALKL 220 (289)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344555566555554
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.0013 Score=63.08 Aligned_cols=257 Identities=12% Similarity=0.035 Sum_probs=170.0
Q ss_pred HHHhhcCChhHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHh
Q 009011 133 TLRRFSNDLTPAFGFFTWAKTQ--TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-NGYVSLATMSTIMRRLVR 209 (546)
Q Consensus 133 ~l~~~~~~~~~a~~~f~~~~~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~~ 209 (546)
.|.+...++.....||+.+..+ .+-.|.. .++..=.-..++..+...-+.++... ...++...+...+.+...
T Consensus 211 ~L~raGydp~gM~~ff~rl~~~~~~~~~~p~----yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 211 TLVRAGYDPQGMPEFFERLADQLRYGGQPPE----YLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHhcCCCCCh----HHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 4444456788889999988742 2222322 24444445566677777777776532 134566666666665554
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
...-..+..++.+-.+. .-..--|..-+ .+...|+.++|+..+..+....|.|+..+......+.+.++.++|.+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 287 ALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred cccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44434444443333321 11222233333 3456788899999998888888888888888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009011 290 KEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369 (546)
Q Consensus 290 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 369 (546)
+.+....+. ....+-.+..+|.+.|++.+|..+++...... +-|...|..+..+|...|+..++..-..
T Consensus 364 ~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A--------- 432 (484)
T COG4783 364 KKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA--------- 432 (484)
T ss_pred HHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH---------
Confidence 998887332 25566677788889999999999998887764 4478889999999999888887765543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQG--VVPNVLTYNTMISSA 416 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~ 416 (546)
..|...|++++|...+....+.. ..|+-.-+...|...
T Consensus 433 ---------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 433 ---------EGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred ---------HHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 44566788888888887776642 123333344455443
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.013 Score=60.41 Aligned_cols=224 Identities=13% Similarity=0.152 Sum_probs=129.2
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 252 (546)
..+++..|....+.+.++.+..+...++.++ ...+.|+.++|..+++.....+ ..|..|...+-.+|.+.++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 4566777777777776633222222222222 2456777777777777765544 236777777777777777777777
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------hhHHHH
Q 009011 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK-D---------FRKVDD 322 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~---------~~~a~~ 322 (546)
.+|+......|. ......+..+|.+.+++.+-.++--+|-+.-++ +...+-++++.+...- . ..-|.+
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 777777765554 666666777777777766554444444332111 3333334444333321 1 123444
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 323 TLKEMQEKG-CKPSVITYTIVMHALGKAKQINEALKVY-EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 323 l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
.++.+.+.+ -.-+..-...-...+...|.+++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 455555443 2112222223334455677788888887 33333333344555566777788888888888888888777
Q ss_pred C
Q 009011 401 G 401 (546)
Q Consensus 401 ~ 401 (546)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 6
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=6.9e-05 Score=72.19 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.-..|+..+...++++.|..+|+++.+.. |. ....+++.+...++..+|++++++..+.. +.+...+..-...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455666666778888888888877632 33 33446777777777777888887776542 45666666666677
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+.++.+.|.++.++.....|.+..+|..|..+|.+.|++++|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777778888777777777777777777788888888888877777776653
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=0.00012 Score=60.30 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+......+...+.+.|++++|.+.|+.+...+ +.+...+..+..++...|++++|...++......|.+...+..+...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 33444455555555566666666665555433 33445555555555555555555555555544445555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=0.00014 Score=59.74 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=51.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
....+...+...|+.++|.+.++.+....|.+...+..+...+.+.|++++|..+++.....+.. +...+..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 34444445555555566655555555444555555555555555555555555555555444322 34444444555555
Q ss_pred cCChhHHHHHHHHHHHc
Q 009011 314 EKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~ 330 (546)
.|++++|...|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555543
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.10 E-value=0.0077 Score=62.78 Aligned_cols=150 Identities=16% Similarity=0.076 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 141 LTPAFGFFTWAKTQTGYM-HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 141 ~~~a~~~f~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
...|.+-|+-+. .+. -+...+....+.|++..+++.|..+.-...+..+...-...|....-.|.+.++...|+.-
T Consensus 508 m~RA~kCf~KAF---eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 508 MKRAKKCFDKAF---ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHh---cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 334444444443 222 3455678899999999999999888444333111111122222334456677788888888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
|+...+.. +.|...+..+..+|.+.|....|.++|.+...-.|.+...-.-..-.-+..|.+.+|...+.....
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88877654 667788888888888888888888888877665555555444455556677888888877776653
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00017 Score=69.47 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+-.....++..+...++++.|+++|+++.+.. |+. ...+...+...++-.+|.+++++.....|.+......-...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455566777778899999999999998753 553 44577777778888899999988887788888888888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+.+.++.+.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999887433 566999999999999999999988887653
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1e-05 Score=48.46 Aligned_cols=33 Identities=42% Similarity=0.812 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPY 510 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 510 (546)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=8.6e-06 Score=48.84 Aligned_cols=33 Identities=27% Similarity=0.619 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS 335 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (546)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555544
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.028 Score=58.21 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=48.7
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 252 (546)
+.|+.++|..+++..... ...+..|...+-..|.+.|+.++|..+|+..... .|+......+..+|.+.+++.+-.
T Consensus 55 r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544431 2224555555555555555555555555555432 344444445555555555554444
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 253 KVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
++--++.+..|.+...+-+++..+.
T Consensus 131 kaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHhCCcccchHHHHHHHHH
Confidence 4443333344444444444444433
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.3e-05 Score=47.69 Aligned_cols=33 Identities=33% Similarity=0.636 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISKGIVP 509 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 509 (546)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00081 Score=55.94 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH--HHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT--RALSV 237 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ 237 (546)
.|..++..+. .++...+.+.++.+.... +.+ ....-.+...+...|++++|...|++.......++. .....
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4455555553 666666666666666632 222 233334456666677777777777776665422221 12333
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKE 291 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 291 (546)
+..++...|++++|...++.... .+.....+......|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45556666666666666655332 223444555566666666666666666654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00073 Score=56.21 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLS---SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV--VSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~ 319 (546)
.++...+...++.+....|.+ ....-.+...+...|++++|...|+........++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444433333 122222334444444555555554444444321111 122223344444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
|+..++...... .....+......+.+.|+.++|...|+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444443322111 122233334444444444444444443
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=0.00021 Score=69.29 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 009011 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK--GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 296 g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 373 (546)
+...+......+++.+....+.+.+..++-..... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445666666666666666677777766666654 1211223445777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR 419 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 419 (546)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776655555556655555555443
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.5e-05 Score=46.41 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
+|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.89 E-value=0.00027 Score=68.47 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEED--LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYAS 481 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 481 (546)
.+......++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34455555555555555556666665555443 1112223444666666666666666666666666666666666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 482 LVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
++..+.+.|++..|.++..+|...+...+..|+...+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 6666666666666666666666555555555555444444
No 148
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.028 Score=53.16 Aligned_cols=309 Identities=15% Similarity=0.123 Sum_probs=167.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.|..+...-...|+.+.|..+++.= |+..-- +..+.+.|..+.| +.+..+.| .||.. |..|+..-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~E-------p~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DLi-~~vLl~L~ 66 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELE-------PRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDLI-YLVLLHLK 66 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcC-------CChHHH---HHHHhcCCchHHH---HHHHHHcC-CccHH-HHHHHHHH
Confidence 3566777777889998888887632 222222 5556667776666 44455544 44443 33333322
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 322 (546)
-.. ... +++. +....|.. ..+...|++..+.+.-..+|.+-.+. .......+-.++.. .+.+.-..
T Consensus 67 ~~l-~~s---~f~~-il~~~p~a----~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 67 RKL-SLS---QFFK-ILNQNPVA----SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred HhC-CHH---HHHH-HHHhCcch----HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHH
Confidence 222 121 1222 22222221 33445566666666555555432211 11112222222222 34333333
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 323 TLKEMQEK-GCKPSVITYTIVMHALGKAKQINEALKVYEK---MK-SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 323 l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
.+....+. +...+......++ ++-.++++. +. +.+......+.+..|.-+...|+...|.++-.+.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F 203 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF 203 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33333221 0001111111111 111122211 11 1111122234455566777889999998887776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG 477 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (546)
. .|+..-|...+.+++..++|++..++... +-++.-|..++.+|.+.|...+|..++..+
T Consensus 204 k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~---------- 263 (319)
T PF04840_consen 204 K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI---------- 263 (319)
T ss_pred C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------
Confidence 4 47999999999999999999988876532 224578999999999999999999988772
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINK 535 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 535 (546)
.+..-+..|.+.|++.+|.+.--+.. |......+...+-..+....+.++-.
T Consensus 264 ~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~~~~~~~i~~ 315 (319)
T PF04840_consen 264 PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNNDQLIADKIEQ 315 (319)
T ss_pred ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCChHHHHHHHHH
Confidence 22566888999999999988765543 55555555555433333333334433
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.00032 Score=53.17 Aligned_cols=75 Identities=17% Similarity=0.381 Sum_probs=43.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 450 MCCRKKRMKVLNFLLTHMFKNDV-SMDAGTYASLVRGLIES--------GKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
.|...+++.....+|+.+++.|+ .|+..+|+.++.+.++. ++.-+.+.+++.|+..+++|+..||+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33334444444445555544444 44455555544444332 2344567777888887888888888888877
Q ss_pred HHhc
Q 009011 521 LEKK 524 (546)
Q Consensus 521 ~~~~ 524 (546)
+.++
T Consensus 114 Llkg 117 (120)
T PF08579_consen 114 LLKG 117 (120)
T ss_pred HHHh
Confidence 7553
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00052 Score=51.82 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
+...+...|++++|+..+++..+.. +.+...+..+..++...+++++|.+.++......+.+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444455555555555444321 222233344444444444444444444444433333334444444555555555
Q ss_pred HHHHHHHHHHH
Q 009011 283 DDAQKAMKEMF 293 (546)
Q Consensus 283 ~~a~~~~~~m~ 293 (546)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.00059 Score=51.76 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQGV-VPNVLTYNTMISSACARS--------EEENALKLLQKMEEDLCKPDCETYAPLL 448 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 448 (546)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-+++.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 555555555555544321 1223344444444444444444444444
Q ss_pred HHH
Q 009011 449 KMC 451 (546)
Q Consensus 449 ~~~ 451 (546)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.0013 Score=52.53 Aligned_cols=104 Identities=18% Similarity=0.079 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLM 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll 239 (546)
++-.+...+.+.|++++|.+.|+.+.+..+. +.....+..+...+.+.|++++|...|+.+..... +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3344555555555555565555555542211 11133444455555555555555555555543210 11123344444
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
.++.+.|+.++|.+.++++....|.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 444555555555555555444444443
No 153
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.72 E-value=0.056 Score=52.87 Aligned_cols=176 Identities=12% Similarity=0.144 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP-NVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
.+....+++++...-..--..+|-..++.-.+..-++.|..+|.+..+.+..+ ++..+++++.-+|. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666677776654333334567778888888888999999999999887777 77888899987775 68899999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--
Q 009011 431 KMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD--AGTYASLVRGLIESGKLELACSFFEEMISKG-- 506 (546)
Q Consensus 431 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 506 (546)
--.+. ..-++..-...+.-+...++-..+..+|++....+..+| ..+|..++.-=..-|+...+.++-+++...-
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 75543 123344456677788899999999999999999855544 4789999999999999999999988876541
Q ss_pred -CCCCHHHHHHHHHHHHhcChhhH
Q 009011 507 -IVPYHSTYKMLEEKLEKKRLGNA 529 (546)
Q Consensus 507 -~~p~~~~~~~l~~~~~~~g~~~~ 529 (546)
..+...+-..+++.|.-.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 22222233344555544444333
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.00086 Score=62.57 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVR-GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
+|-.++...-+.+..+.|+++|.+..+ . ...+...|-.....-.+ .++.+.|..+|+...+. +..+...+..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK-D-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 455566666666666666666666654 2 33344444444444222 34455566666665543 34455555555566
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSS---QIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+.+.|+.+.|..+|++....++.+. .+|...+..=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666555433332 3555555555555666655555555554
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.02 Score=52.01 Aligned_cols=59 Identities=5% Similarity=-0.029 Sum_probs=38.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLAT---MSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
.....+...|++++|.+.|+++.... +.+... .-.+..++.+.+++++|+..|++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34555566788888888888877632 222222 245566777788888888888877664
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.2e-05 Score=43.87 Aligned_cols=26 Identities=31% Similarity=0.717 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
|+.+|++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.0023 Score=50.99 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CHHHHHHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL---SSQIFNILI 273 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li 273 (546)
++..+...+.+.|++++|.+.|+.+.+... ......+..+..++.+.|+++.|.+.++.+....|. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666667777777777777654321 111234455566666666666666666665543222 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g 296 (546)
.++.+.|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666553
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=7.5e-05 Score=43.19 Aligned_cols=30 Identities=43% Similarity=0.725 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGI 507 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 507 (546)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777776653
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.0011 Score=49.98 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
++..+...+...|++++|.+.++++.+ . .+.+...+..+...+...|++++|.+.|+...+.. +.+..++..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE-L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 355677888889999999999999987 3 44556788888999999999999999999988754 45556788888889
Q ss_pred HccCCHHHHHHHHHHhhc
Q 009011 243 VKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~ 260 (546)
...|+.+.|...+.....
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 999999999999887754
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.0022 Score=55.13 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 404 PNVLTYNTMISSACA-----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 404 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
.+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+.-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 466777777777654 35566666667777777777777777777766543 2211 0111111110
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 479 YASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 524 (546)
-| -.+.+-|++++++|...|+.||..|+..+++.+.+.
T Consensus 114 ------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 ------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred ------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 00 123345666666666666666666666666666443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0052 Score=52.82 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD--TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
....+..+...+...|++++|+..|++..+.+..+. ...+..+..++.+.|++++|...+.+.....|.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344566666677777777777777777765332221 345666666777777777777777776665566666666677
Q ss_pred HHHHhcCCHHHHH
Q 009011 274 HGWCKTRKVDDAQ 286 (546)
Q Consensus 274 ~~~~~~g~~~~a~ 286 (546)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 7777766654444
No 162
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.58 E-value=0.001 Score=57.16 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHH
Q 009011 264 LSSQIFNILIHGWCKT-----RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK----------------DFRKVDD 322 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~a~~ 322 (546)
.+..+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3555566666666543 566777777777888888888888888877665421 2233444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKA 349 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~ 349 (546)
++++|...|+.||..++..+++.+++.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 444444444444444444444444433
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0014 Score=61.12 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT-LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+.++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46666777777777888888888887543 2333444333333 333466666888888877777888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
+.|+.+.|..+|++.... +.++ ...|...++.=.+.|+.+.+.++.+.+.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888765 2222 247777777777778888887777777764
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.027 Score=53.15 Aligned_cols=273 Identities=11% Similarity=0.032 Sum_probs=133.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
.-..+-+..++..|+..+....+ - .+.+...|..-...+...|++++|+--.+.-.+.. +.........-.++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~-~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAID-M-CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHH-h-CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 34455556666666666666655 2 44445555555555555666666555444433211 111223333333444444
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH-HHHHhcCChhHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG-FSPDVVSYTCFI-EHYCREKDFRKVDDTL 324 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li-~~~~~~g~~~~a~~l~ 324 (546)
+..+|.+.++ +...+ ....++..++...... -+|...+|..+- .++.-.|+.++|.+.-
T Consensus 132 ~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444443 11111 1112222222222221 123334444332 3455667777777766
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHH----------HHHhcCCHHH
Q 009011 325 KEMQEKGCKPSVITYTIVMHA--LGKAKQINEALKVYEKMKSDDCLPDTSFYSS---LIF----------ILSKAGRVKD 389 (546)
Q Consensus 325 ~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~----------~~~~~g~~~~ 389 (546)
-...+.... + .+..++++ +--.++.+.+...|.+....+ |+-..--. ... -..+.|++.+
T Consensus 193 ~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 666554311 2 33333333 334567777777777776654 33322211 111 1235667777
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHH
Q 009011 390 ANEIFEDMKKQ---GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET---YAPLLKMCCRKKRMKVLNFL 463 (546)
Q Consensus 390 A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~ 463 (546)
|.+.|.+.+.. +..++...|.....+..+.|+..+|+.--++..+. |... |..-..++...+++++|.+-
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776643 22334445555555666677777777666665542 3222 22222344456666677666
Q ss_pred HHHHHhC
Q 009011 464 LTHMFKN 470 (546)
Q Consensus 464 ~~~m~~~ 470 (546)
++...+.
T Consensus 344 ~~~a~q~ 350 (486)
T KOG0550|consen 344 YEKAMQL 350 (486)
T ss_pred HHHHHhh
Confidence 6666553
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.003 Score=54.09 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK--DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|+.++|...++......+.....++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4555666666667777777777777775432111 22356666666667777777777776665544545555555555
Q ss_pred HHH
Q 009011 275 GWC 277 (546)
Q Consensus 275 ~~~ 277 (546)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 555
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0047 Score=59.87 Aligned_cols=89 Identities=10% Similarity=-0.041 Sum_probs=44.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
.+...|++++|.+.|+++.+.... +...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344455555555555555543321 34444445555555555555555555555442 2234444445555555555555
Q ss_pred HHHHHHHHHhC
Q 009011 460 LNFLLTHMFKN 470 (546)
Q Consensus 460 a~~~~~~m~~~ 470 (546)
|...+++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.048 Score=49.63 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=22.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQ--GVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34444555555555444444432 111122233344444545555555444443
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.0024 Score=57.49 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
-+.+.+++++|+..|.+.++... -|.+-|..-..+|++.|.++.|++-.+..+..+ +-...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 35577888888888888887542 256666667778888888888888777777643 2224678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 009011 460 LNFLLTHMFKNDVSMDAGTYAS 481 (546)
Q Consensus 460 a~~~~~~m~~~~~~~~~~~~~~ 481 (546)
|.+.|++..+. .|+-.+|-.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHH
Confidence 88888877764 344444443
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.0097 Score=47.05 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=69.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKD--TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL---SSQIFNILIHGWC 277 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~ 277 (546)
+...+-..|+.++|+.+|++....|.... ...+..+...+...|+.++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677888888888888887775443 335556666777788888888888777665554 4444444555677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
..|+.++|...+-.... ++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888777766554 24445555555544
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.0062 Score=59.02 Aligned_cols=90 Identities=9% Similarity=0.003 Sum_probs=53.1
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
..+...|++++|++.|++..+.. +.+...|..+..++...|++++|...++......|.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 33445566666666666665543 34455555555566666666666666666555555556666666666666666666
Q ss_pred HHHHHHHHHHC
Q 009011 285 AQKAMKEMFQQ 295 (546)
Q Consensus 285 a~~~~~~m~~~ 295 (546)
|...|++....
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.40 E-value=0.0047 Score=50.70 Aligned_cols=92 Identities=13% Similarity=-0.005 Sum_probs=46.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK 281 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (546)
.+...+.+.|++++|..+|+.+.... +-+..-|-.|..++-..|++++|...|.....-.+.++..+..+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 33444445555555555555554432 22333334444444455555555555555444444555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 009011 282 VDDAQKAMKEMFQ 294 (546)
Q Consensus 282 ~~~a~~~~~~m~~ 294 (546)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.36 E-value=0.00038 Score=51.60 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=6.5
Q ss_pred HHHHHhcCCHHHHHHHH
Q 009011 273 IHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~ 289 (546)
..++.+.|++++|+++|
T Consensus 65 a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33344444444444433
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.0068 Score=49.80 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=51.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
...+...|++++|.++|+-+..-.|.+..-|..|..++-..|++++|...|.......+. |...+-.+-.++...|+.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHH
Confidence 334455566666666666555545555555666666666666666666666665555432 4555555555666666666
Q ss_pred HHHHHHHHHHH
Q 009011 319 KVDDTLKEMQE 329 (546)
Q Consensus 319 ~a~~l~~~m~~ 329 (546)
.|.+-|+..+.
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 66665555443
No 174
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.22 Score=50.89 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+.+. .+.-|..+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445556677888888888877765 4788888888999999999988777665542 2567888899999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+-
T Consensus 756 ~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHHh
Confidence 999999999888654321 15678889999999888765443
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00053 Score=50.83 Aligned_cols=18 Identities=39% Similarity=0.446 Sum_probs=8.0
Q ss_pred HHHHHHcCChHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFE 500 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~ 500 (546)
..++.+.|++++|++.|+
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 444444444444444444
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.27 E-value=0.0075 Score=51.59 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 372 SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP--NVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
..+..+...+...|++++|...|+........+ ...+|..+...+...|++++|.+.+++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445555555566666666666555432111 1234555555566666666666666665543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.26 E-value=0.043 Score=55.80 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 009011 368 LPDTSFYSSLIFILSKA--G---RVKDANEIFEDMKKQGVVPN-VLTYNTMISSACAR--------SEEENALKLLQKME 433 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 433 (546)
+.+...|...+.+.... + ..++|.++|++..+.. |+ ...|..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555565555553322 1 2456666666666543 33 22333322222211 11233333333333
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 434 ED-LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 434 ~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
.. ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 22 123344666666555666788888888888887765 46677888888888888888888888887744 35555
Q ss_pred HHHHHHH
Q 009011 513 TYKMLEE 519 (546)
Q Consensus 513 ~~~~l~~ 519 (546)
||...-+
T Consensus 488 t~~~~~~ 494 (517)
T PRK10153 488 TLYWIEN 494 (517)
T ss_pred hHHHHHh
Confidence 5544333
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.082 Score=49.57 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSDDCL-----PDTS-FYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
+..+...+.+.|++++|.++|+++...... .+.. .+-..+-++...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555666666666666655543221 1111 111222234445556666666655543
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.023 Score=48.80 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS--VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 381 (546)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33334444444445555444444443321111 2344444555555555555555555554432 12333444444444
Q ss_pred HhcCCHH
Q 009011 382 SKAGRVK 388 (546)
Q Consensus 382 ~~~g~~~ 388 (546)
...|+..
T Consensus 117 ~~~g~~~ 123 (172)
T PRK02603 117 HKRGEKA 123 (172)
T ss_pred HHcCChH
Confidence 4444433
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.24 E-value=0.21 Score=48.04 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHh---cCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHH
Q 009011 422 EENALKLLQKMEEDLCKPDCETYAP----LLKMCCR---KKRMKVLNFLLTHMFKNDVSM----DAGTYASLVRG--LIE 488 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~---~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~--~~~ 488 (546)
-++|+.+++.+.+.. .-|...-+. +=.+|.+ ...+.+...+-+-+.+.|+.| +...-|.+.++ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 677777777776542 223222222 2222322 223444444444455566654 33455555544 467
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
+|++.++.-.-.-+. .+.|++.+|..+--++....++++|..++..+-
T Consensus 475 qgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 899998876655555 477999999999888888999999999987763
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.23 E-value=0.052 Score=50.86 Aligned_cols=206 Identities=13% Similarity=0.141 Sum_probs=108.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhC---CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELN---NGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
.|......|-..|++++|.+.|....... ..+ .....|......|.+. ++++|++.+++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 45556667777778887777777654311 010 1122233333333222 555555555444
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQ----GFSP-DVVSYTCFIEHYC 312 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~ 312 (546)
+..|...|+...|-+.+.. +...|-.. |++++|.+.|++..+. |-.. -...+..+...+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3455666666665555433 34455555 6777777777765442 2100 1234556667788
Q ss_pred hcCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEKGCK-----PSVI-TYTIVMHALGKAKQINEALKVYEKMKSDD--CLP--DTSFYSSLIFILS 382 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~ 382 (546)
+.|++++|.++|+++...-.. .+.. .|...+-++...|++..|.+.+++..... +.. .......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 888888888888887764321 1222 22333445566788888888888877553 221 2344555666654
Q ss_pred h--cCCHHHHHHHHHHHH
Q 009011 383 K--AGRVKDANEIFEDMK 398 (546)
Q Consensus 383 ~--~g~~~~A~~~~~~~~ 398 (546)
. ...++.|..-|+.+.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 3 223555555555443
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.16 Score=45.17 Aligned_cols=133 Identities=18% Similarity=0.120 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH---
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM--- 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll--- 239 (546)
+-+.++..+.-.|.+.-..+++.+..++. .+.++.....+++.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34677778888888888888888888855 67788888888888889999999999998776543344444443332
Q ss_pred --HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 240 --DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 240 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (546)
..+.-.+++..|...+.++....+.++..-|.-.-+..-.|+..+|.+.++.|.+.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 335556777788888888877777777777777777777788888888888888763
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.16 E-value=0.22 Score=46.84 Aligned_cols=319 Identities=17% Similarity=0.176 Sum_probs=197.3
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-
Q 009011 130 VEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLG--KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR- 206 (546)
Q Consensus 130 ~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~- 206 (546)
+-.+++.....+..+.+.|.-.+++.|| .+|-..+. -.|+-..|.++-.+-.+. ...+....-.++.+
T Consensus 58 lwwlv~~iw~sP~t~~Ryfr~rKRdrgy-------qALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQ 128 (531)
T COG3898 58 LWWLVRSIWESPYTARRYFRERKRDRGY-------QALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQ 128 (531)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhhhHH-------HHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHH
Confidence 3445555666777788888888777665 45554444 457888888877766531 22333333333333
Q ss_pred -HHhcCChHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 207 -LVRGGRYDDAVEAFRGMKKYGVEKDTRA--LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 207 -~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
-.-.|++++|.+-|+.|.. .|.... +..|.-..-+.|+.+.|...-+.....-|.-...+.+.+...|..|+++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 3346999999999999975 232222 2333333456788998888888877767777788999999999999999
Q ss_pred HHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 009011 284 DAQKAMKEMFQQG-FSPDVV--SYTCFIEHYC---REKDFRKVDDTLKEMQEKGCKPSVI-TYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 284 ~a~~~~~~m~~~g-~~~~~~--~~~~li~~~~---~~g~~~~a~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~ 356 (546)
.|+++++.-.... +.++.. .-..|+.+-. -..+...|...-.+..+ ..||-. .-.....++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999998876542 333432 1222222211 12344455544444333 344432 2223456788899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ-GVVP-NVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
.+++.+=+....|+ .. .+..+.+.|+. +.+-++...+. .++| +....-.+..+....|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99998888754444 32 22334455553 22222222210 1122 455666677777788888887776666555
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhC
Q 009011 435 DLCKPDCETYAPLLKMCCR-KKRMKVLNFLLTHMFKN 470 (546)
Q Consensus 435 ~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~ 470 (546)
. .|....|..|...-.. .|+-.++...+.+..+.
T Consensus 358 ~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 E--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 6777788777765544 48888888888887764
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.13 E-value=0.27 Score=47.18 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDL-CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY-ASLVR 484 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~ 484 (546)
..|.+.+....+....+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777777777778888899998888887 5677778888887654 57777888888765553 2344443 56677
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 485 GLIESGKLELACSFFEEMISKGIVPY--HSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
-+...|+-+.|..+|+..+++ +.-+ ..+|..++..=..-|+...+..+-++|...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 778888888888888876654 2223 457777887777778887777777766543
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.024 Score=51.33 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=55.3
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
+.+.+++++|...|.+...-.|.|.+.|..-..+|++.|.++.|++-.+..+..... -..+|..|-.+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 445566666666666666555666666666666666666666666655555554211 2345566666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHH
Q 009011 322 DTLKEMQEKGCKPSVITYT 340 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~ 340 (546)
+.|+...+ +.|+..+|-
T Consensus 170 ~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHhhhc--cCCCcHHHH
Confidence 66655554 344444443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0014 Score=46.15 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.|++++|.+.|+.+....|.+..++..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444444445555555555555444444443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.07 E-value=0.073 Score=54.17 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV 472 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 472 (546)
+...|.++.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44555555444555566777777776666653 5666666666666667777777776666665443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.047 Score=49.67 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK---RMKVLNFLLTHMFKNDVSMDAGTYA 480 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~ 480 (546)
-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++.... .-.++..+++++.+.+.. |.....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 377888888888888888888888888887753 445566666665554433 356788888888887765 778888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 481 SLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
.|...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 88888888999999999999998764
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.04 E-value=0.0024 Score=44.98 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=28.9
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
+.|++++|+++|+.+.. . .|.+...+..+...|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ-R-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHH-H-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45556666666666555 2 3445555555566666666666666666655543
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.03 E-value=0.012 Score=55.34 Aligned_cols=132 Identities=9% Similarity=-0.066 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMK----SDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKK----QGV-VPNVL 407 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 407 (546)
.|..+...|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555566778888876655432 22311 2345667777888888888888887775432 221 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEED----L-CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+..+|...|.-..++++|+.++.+-... + .--....++.|..++...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555667777777788888777654321 1 122346788888888888888888877766554
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.35 Score=45.99 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHH--
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE--HYCREKDFRKVDDTLKEMQEKGCKPSVITYT---IVMHA-- 345 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~---~li~~-- 345 (546)
..++.-.|+.++|..+--...+.. ....+...++ ++.-.++.+.+...|++.+..+ |+...-. ...+.
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHH
Confidence 345566788888887777666542 1222333333 3334567788888887776653 3332222 12222
Q ss_pred --------HHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHH
Q 009011 346 --------LGKAKQINEALKVYEKMKSDD---CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT---YNT 411 (546)
Q Consensus 346 --------~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ 411 (546)
..+.|++.+|.+.|.+.+... ..++...|........+.|+.++|+.--+...+. |..- |..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ 326 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLR 326 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHH
Confidence 346788888888888877643 3355666666666777888888888887777753 3332 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 412 MISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
-..++...+++++|.+-+++..+.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233455567888888888877665
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.95 E-value=0.068 Score=42.29 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 009011 345 ALGKAKQINEALKVYEKM 362 (546)
Q Consensus 345 ~~~~~g~~~~a~~~~~~~ 362 (546)
.+...|++++|..++++.
T Consensus 47 tlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 47 TLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333334444444444333
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.90 E-value=0.11 Score=45.84 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.....+...|++++|.+.|+.+....+. +....+.-.++.++.+.|++++|...|++..+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555677777777777777664322 23345555667777777777777777777655
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.65 Score=47.16 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-GVEKDTRALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~ 252 (546)
-|++++|.+++-+|.++. ..|..+.+.|++-.+.++++.--.. .-+.-..+++.+...+.....+++|.
T Consensus 747 ~g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888887776532 2255566667776666665442100 00111345566666666666666666
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
+.|..-.. ....+.++.+..++++-+.+...+.+ +....-.+.+++...|.-++|.+.+
T Consensus 817 ~yY~~~~~--------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 817 KYYSYCGD--------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHhccc--------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 66644321 12234444444444444444443332 2333334444555555555554433
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.16 Score=44.95 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=36.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS 265 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 265 (546)
.....+.+.|++.+|++.|+.+...-. +--....-.+..++-+.|+.+.|...++.+....|.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 344556677778888888877765311 1223344555666777777777777777766654443
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.82 E-value=0.006 Score=42.47 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=26.5
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+.+.|++++|.+.|+.+....|.+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555444444455555555555555555555555555443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.36 Score=42.98 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 009011 372 SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLK-- 449 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-- 449 (546)
.+.+.++.++.-.|.+.-..+++.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566666777777888888888888876666777788888888888888888888887766544555555554443
Q ss_pred ---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 450 ---MCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 450 ---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
.+.-.+++..|...+.++...+.. |....|.-.-++.-.|+..+|++.++.|++.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344566777777778777776554 55555555555555788889999999888653
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.77 E-value=0.0059 Score=42.52 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=33.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
...+.+.|++++|.+.|+++.+ . .+.+...+..+...+.+.|++++|+..|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK-Q-DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC-C-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666665 3 444566666666666666666666666666654
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.75 E-value=0.039 Score=50.68 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCCHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG--VEKDTRALSVL 238 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l 238 (546)
..|..-+..+.+.|++++|...|+.+.+..+. .....++..+...|...|++++|+..|+.+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556667777777777777663211 1124566667777777777777777777775431 11123334444
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
..++...|+.++|.++|+.+....|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5555566666666666666665555443
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.088 Score=47.97 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhcCCCCCHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK---GNSVEHAYKVFLEFKDCIPLSSQIF 269 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 269 (546)
+|-+...|-.|...|...|+++.|...|....+.. .++...+..+..++.. ..+..++..+|+++....+.++...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45555566666666666666666666666555432 3334444333333322 1234455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 270 NILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555566666666655555554
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.33 Score=48.75 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
+..+...+...+.+...+.-|-++|..|-. ...+++.....+++++|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 334444455555566667777777777632 12355666677888888887776654
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.56 Score=44.49 Aligned_cols=277 Identities=17% Similarity=0.182 Sum_probs=152.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
|..+...-.+.|+.+-|..+++. +|+..-= +..+.+.|+.+.|.. +.+..+ .+| -+|..|+..--+.
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~AL~--kAi~Sg-D~D-Li~~vLl~L~~~l 69 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELALN--KAIESG-DTD-LIYLVLLHLKRKL 69 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHHHH--HHHHcC-Ccc-HHHHHHHHHHHhC
Confidence 55667777788999988887754 4444322 344566777776632 222222 222 3455666544433
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
. .. +++ .+... .|.. ..+...|++..+.+...++|.+-.+. .......+-.++.. .+.+.-...+
T Consensus 70 ~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~~L 134 (319)
T PF04840_consen 70 S-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKISFL 134 (319)
T ss_pred C-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHHHH
Confidence 2 11 233 33322 1222 33455677777777766666542211 11122222233322 3444333333
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 360 EKMKSDDC-LPDTSFYSSLIFILSKAGRVKDANEIFED---MKK-QGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 360 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
....+.-- ..+......++. +..++++. +.+ .+......+.+..|.-+...|+...|.++-.+..
T Consensus 135 ~~a~~~y~~~k~~~f~~~~~e---------~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk- 204 (319)
T PF04840_consen 135 KQAQKLYSKSKNDAFEAKLIE---------EQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK- 204 (319)
T ss_pred HHHHHHHHhcchhHHHHHHHH---------HHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC-
Confidence 33322100 011122222222 22222221 111 1111122345566777788899998888876652
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 435 DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 435 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
-|+..-|...+.+++..++|++...+-.. +-.+.-|...+.+|.+.|...+|..++..+. +
T Consensus 205 ---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~------~---- 265 (319)
T PF04840_consen 205 ---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP------D---- 265 (319)
T ss_pred ---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC------h----
Confidence 47889999999999999999998876542 1245789999999999999999999988731 2
Q ss_pred HHHHHHHHhcChhhHHHHH
Q 009011 515 KMLEEKLEKKRLGNAKERI 533 (546)
Q Consensus 515 ~~l~~~~~~~g~~~~a~~~ 533 (546)
..-+..|.+.|++.+|.+.
T Consensus 266 ~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 266 EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHCCCHHHHHHH
Confidence 3345556666666666544
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.66 E-value=0.33 Score=40.90 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG---FSPDVVSY 304 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~ 304 (546)
-|+..--..|..++.+.|+..+|...|++...+ +..|....-.+.++....+++.+|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555566666777777777777777666654 55566666667777777777777777777766542 2233 23
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 305 TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 305 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
-.+...|...|.+.+|+.-|+..... -|+...-......+.+.|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34456666777777777777777664 334333333444556666655554444333
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=1 Score=45.93 Aligned_cols=342 Identities=12% Similarity=0.087 Sum_probs=177.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN--------GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK 230 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (546)
|-+..|..|...-...-.++.|...|-+...-.+ ...+...-.+-+.+| -|++++|.++|-+|.++.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 5556666666555555555555555544432110 001111111223333 489999999998886543
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDC--IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFI 308 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 308 (546)
..+..+.+.|++-...++++.-..+ ...-...|+.+...+.....|++|.+.+..-... ...+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 2455667788888777776543221 1222457899999999999999999988765421 2356
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 309 EHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVK 388 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 388 (546)
.++.+..++++.+.+.+.+.+ +....-.+.+++.+.|.-++|.+.|-+... | .+.+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHH
Confidence 777777777777666555433 344555666677777777776665543211 1 12334455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH--HH--HH
Q 009011 389 DANEIFEDMKKQGVVPNVLTY--------------NTMISSACARSEEENALKLLQKMEED----LCKPDCE--TY--AP 446 (546)
Q Consensus 389 ~A~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~--~~--~~ 446 (546)
+|.++-+...- |.+.+. ---|..+.+.|+.-.|.+++.+|.+. +.++-.. .| .+
T Consensus 896 ~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 896 EAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 55555443221 111111 11233455566665666666555432 2222211 11 11
Q ss_pred HH-HHH----------HhcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHC-
Q 009011 447 LL-KMC----------CRKKRMKVLNFLLTHMFK-------NDVSMDAGTYASLVRG--LIESGKLELACSFFEEMISK- 505 (546)
Q Consensus 447 ll-~~~----------~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~- 505 (546)
++ .-+ -+.|..++|..+++...- .+.-.-...|..+|-+ -...|.++.|++.--.+.+.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 11 111 123444444443332211 0011123444444433 45568888877765554443
Q ss_pred CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 506 GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 506 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.+-|...+|..+.-+-+..+.+..--+.|-.+.
T Consensus 1052 d~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 466777777776555555555544444444443
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.56 E-value=0.009 Score=42.13 Aligned_cols=26 Identities=8% Similarity=0.127 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
|..+...+...|++++|+..|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.50 E-value=0.03 Score=46.51 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS-----KGIVPYHSTYK 515 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 515 (546)
+...++..+...|+++.|..+.+.+....+- |...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3445555666777777777777777776554 677777888888888888888777776643 37777776643
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.50 E-value=0.066 Score=42.80 Aligned_cols=98 Identities=8% Similarity=-0.014 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
|..++..+|.++++.|+.+....+++..-. +.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666667777777777766666655422 1111100 0000 0112345678888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 009011 485 GLIESGKLELACSFFEEMISK-GIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 522 (546)
+|+..|++..|+++++...+. +++.+..+|..|++-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887765 67777788888777543
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.48 E-value=0.81 Score=43.31 Aligned_cols=279 Identities=13% Similarity=0.079 Sum_probs=131.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILI--HGWCKTRKVDDAQKAMKEMFQQGFSPDVVS--YTCFIEHYCREKDFRKV 320 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a 320 (546)
.|+-..|.++-.+..+.+..|....-.|+ +.-.-.|+.+.|.+-|+.|... |.... ...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 45555555555444333333322222222 2233456677777777776642 22111 11122223355666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH--HHHHHHHH---hcCCHHHHHHHH
Q 009011 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFY--SSLIFILS---KAGRVKDANEIF 394 (546)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~--~~li~~~~---~~g~~~~A~~~~ 394 (546)
..+-+..-..-.. -.......+...|..|+++.|+++++.-....+ .++..-- ..|+.+-. -..+...|.+.-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6666555443211 234555666666777777777777665544321 2222111 11111111 112344455444
Q ss_pred HHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCC
Q 009011 395 EDMKKQGVVPNVLTYN-TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDV 472 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~ 472 (546)
.+..+ +.||...-. .-..++.+.|+..++-.+++.+-+.. |.+......+ +.+.|+ .+..-++...+ ...
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhc
Confidence 44433 234433222 22345667777777777777776653 3333332221 233333 22222222222 111
Q ss_pred C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-ChhhHHHHHHHHH
Q 009011 473 S-MDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK-RLGNAKERINKLL 537 (546)
Q Consensus 473 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m 537 (546)
+ .+....-.+.++-...|++..|..--+... ...|....|..|.+.-... |+-.++...+.+-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 1 244455555666666777776666555554 3446666666665554443 6666666555443
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.45 E-value=0.016 Score=40.78 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
|..+...+...|++++|+..|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333444444444433333
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.43 E-value=0.47 Score=39.99 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHH
Q 009011 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG---CKPSVITYT 340 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~~~~ 340 (546)
|++..-..|.....+.|+..+|...|.+....-+.-|....-.+.++....+++..|...++.+-+.. -.||. ..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 45555556666666667777777766666554334455555555666666666666666666665542 23332 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEI 393 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 393 (546)
.+...+...|.+.+|+.-|+.....- |+...-......+.+.|+.++|..-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence 45566666666666666666666543 3333333333445566655554433
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.39 E-value=0.93 Score=43.55 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.+..+...++-+|....+++..+++.+.|..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~ 169 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEA 169 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhc
Confidence 3444444555556666666666666666654
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.38 E-value=0.088 Score=48.36 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009011 99 KISKIL 104 (546)
Q Consensus 99 ~~~~~l 104 (546)
.+.+++
T Consensus 44 ~le~~~ 49 (263)
T PRK10803 44 QLERIS 49 (263)
T ss_pred HHHHHH
Confidence 333333
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.36 E-value=0.42 Score=47.99 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----------
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH----------- 511 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------- 511 (546)
+...+..-+.+...+..|.++|..|-+. ..+++.....+++++|..+-+...+. .|+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333333344455555566666555321 23445555566666666665554322 1221
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 512 STYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.-|...-++|-+.|+..+|.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 123344456666677777777666664
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.36 E-value=0.029 Score=40.01 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
..|.+.++++.|.++++.+...++. +...|......+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455666666666666666665544 55566666666666777777777776666543
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.35 E-value=0.89 Score=43.68 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHH
Q 009011 318 RKVDDTLKEMQEKGCKP---SVITYTIVMHALGKAKQINEALKVYEKMKSDD---CLPDTSFYSSLIFILSK---AGRVK 388 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~ 388 (546)
++..+.+.+|...=..| +..+...++-+|....+++...++.+.+...- +.-...+-.....++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 34444455555431112 23334456667999999999999999998752 11223333345556667 89999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-h-
Q 009011 389 DANEIFEDMKKQGVVPNVLTYNTMISSACA---------RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR-M- 457 (546)
Q Consensus 389 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~- 457 (546)
+|.+++..+......++..+|..+...|-. ....++|...|.+.-+. .|+...--.+...+...|. .
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 999999997666667888899988877632 12367788888776554 3554332222222223332 2
Q ss_pred --HHHHHHH---H-HHHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 458 --KVLNFLL---T-HMFKNDV---SMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 458 --~~a~~~~---~-~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
.+..++- . ...+.|. ..|.-.+.+++.+..-.|++++|.+..++|....
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2333333 1 1222332 2344455677888888999999999999998663
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.27 E-value=0.2 Score=49.81 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
.+.++..+-+.|..+.|+.+-.+-.. . .....+.|+.+.|.++.++ ..+...|..|.+...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-R------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-H------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-H------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 45666666666666666655443322 1 4444555666666555433 234556666666666
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..++
T Consensus 359 ~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp HTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred HcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 66666666666655543 55555556666666555555555444321 23333344444555555444
Q ss_pred HH
Q 009011 324 LK 325 (546)
Q Consensus 324 ~~ 325 (546)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.026 Score=46.88 Aligned_cols=53 Identities=11% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
..+...|+.++|..+...+....|.+...|..+|.+|...|+..+|.++|+++
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.23 E-value=0.088 Score=42.10 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKMEE-DLCKPDCETYAPLLKM 450 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~ 450 (546)
.|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|++-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44555555555555555555555555544432 2344444445444443
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.11 E-value=0.12 Score=48.82 Aligned_cols=285 Identities=14% Similarity=0.032 Sum_probs=157.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHH------hhcCCCCCHHHHHHHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA----LSVLMDTLVKGNSVEHAYKVFLE------FKDCIPLSSQIFNILI 273 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~~a~~~~~~------~~~~~~~~~~~~~~li 273 (546)
..-+|+.|+....+.+|+...+.| ..|..| |..|..+|.-.+++++|.++... ....-.........|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 345889999999999999998877 444443 45566666677788888877632 1111111222333444
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 274 HGWCKTRKVDDAQKAMKEM----FQQGFS-PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m----~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
+.+.-.|.+++|.-.-.+- .+.|-+ .....+..+...|...|+.-... .-.+.|-.++.++ .
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-~-------- 169 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-S-------- 169 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-H--------
Confidence 5555556666665443322 122111 11223333444444443321100 0001111111111 0
Q ss_pred cCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHh
Q 009011 349 AKQINEALKVYEK----MKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMK----KQGVV-PNVLTYNTMISSACA 418 (546)
Q Consensus 349 ~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~ 418 (546)
.++.|.++|.+ +.+.|-. .-...|..|-+.|.-.|+++.|...-+.-. +.|-. .....+..+..++.-
T Consensus 170 --al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 170 --ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 12223333322 1122100 123355666666777789999887655332 22211 123467778888888
Q ss_pred cCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHH
Q 009011 419 RSEEENALKLLQKME----EDLC-KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-----NDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~----~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~ 488 (546)
.|+++.|.+.|+.-. +.|- .......-.|.++|.-..++++|+.++.+-.. .+..-....+..|..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999999999888653 3331 12234455677788888888999888876443 1122245678889999999
Q ss_pred cCChHHHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMIS 504 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~ 504 (546)
.|..++|+.+.+.-.+
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999988876554
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=1.2 Score=40.65 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=69.1
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
....|+..+|..+|.......+.+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34556666666666665555555555666666666666776666666666654311111111112233333333333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC
Q 009011 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g 385 (546)
.+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. --|...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333221 11444444455556666666666665555544321 124444445555554444
No 221
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.99 E-value=1.4 Score=41.31 Aligned_cols=131 Identities=21% Similarity=0.317 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSK--AG----RVKDANEIFEDMKKQGV---VPNVLTYNTMISSACARSEE 422 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~ 422 (546)
+++.+.+++.|.+.|+.-+..+|-+....... .. ...+|.++|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888877666666553333332 12 25568888888887543 2344555555443 33333
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 423 ----ENALKLLQKMEEDLCKPDCE--TYAPLLKMCCRKKR--MKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 423 ----~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 45666777777766655432 33333332222222 4467777778888887777766665543
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.56 Score=42.79 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=88.0
Q ss_pred HHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 169 DVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 169 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
......|++.+|..+|+.... . .+.+...--.+...|...|+.+.|..++..+...--.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~-~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ-A-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH-h-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567888888888888777 3 44456666677888888888888888888875432222222222334444444444
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCh
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ--GFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~ 317 (546)
.+...+-.... ..|.|...-..+...+...|+.++|.+.+-.+..+ |.. |...-..++..+.-.|.-
T Consensus 220 ~~~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 43333333332 35567777777788888888888887776666554 333 444455555555555533
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.93 E-value=0.63 Score=36.80 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009011 413 ISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
+..+...|+-++..+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333344444444444444443321 3444444444444444444444444444444433
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.88 E-value=0.038 Score=39.40 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+.+++++|.++++.+....|.+...+.....++.+.|++++|...|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444555555554444444444444555555555555555555555555443
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.85 E-value=0.7 Score=46.70 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+..++...+=.||-+.+++.+.+..+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 33444555555666666666555444
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.84 E-value=0.076 Score=47.57 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE----------------KDFRKVDDTLKEMQEKGCKPSVITYTIVM 343 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~a~~l~~~m~~~g~~p~~~~~~~li 343 (546)
+.++-....++.|.+-|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34555555566677777777777777777655432 23456888999999999999999999999
Q ss_pred HHHHhcCCH-HHHHHHHHHHH
Q 009011 344 HALGKAKQI-NEALKVYEKMK 363 (546)
Q Consensus 344 ~~~~~~g~~-~~a~~~~~~~~ 363 (546)
.++++.+-. .+..++.-.|.
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999887743 33444444443
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.82 E-value=1.3 Score=39.67 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=88.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------
Q 009011 347 GKAKQINEALKVYEKMKSDD--CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA------ 418 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~------ 418 (546)
.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.+++++|...+++....-.......|-.-|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 35566777777776666442 1123444555556666677777777766666654322222334444443332
Q ss_pred -cCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCChH
Q 009011 419 -RSEEEN---ALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY-ASLVRGLIESGKLE 493 (546)
Q Consensus 419 -~g~~~~---A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~ 493 (546)
..+... |..-|++++.. -||..- ...|..-...+... ..-+ -.+.+-|.+.|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~Y-------------a~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNSRY-------------APDAKARIVKLNDA-----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCCcc-------------hhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcChH
Confidence 122222 33333333332 233210 00111111111000 0001 12345667778888
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhhc
Q 009011 494 LACSFFEEMISKGIVPY---HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQK 544 (546)
Q Consensus 494 ~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 544 (546)
.|..-+++|++. ..-+ ...+-.+..+|..-|..++|.+.-+.+....++.
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 888888888776 2222 2334455677777888888888777776655443
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.39 Score=47.77 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 335 SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
+...|..|.+...+.|+++.|++.|.+..+ +..|+-.|.-.|+.++..++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555444321 23344444444555444444444443
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.68 E-value=0.89 Score=37.30 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRG 210 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~ 210 (546)
.++..+...+........++.+... +..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~--~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL--NSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc--CccchhHHHHHHHHHHHH
Confidence 3444444444555555555554442 224444555555555543
No 230
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.65 E-value=1.9 Score=40.27 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=12.3
Q ss_pred HcCCChHHHHHHHHHHHh
Q 009011 172 GKSKKFCLMWELVKEMDE 189 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~ 189 (546)
.+.|+++.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356777777777777665
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=95.65 E-value=1.1 Score=37.37 Aligned_cols=87 Identities=14% Similarity=-0.043 Sum_probs=57.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 009011 416 ACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELA 495 (546)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 495 (546)
+...|++++|..+|.-+.-.+ .-+...+..|..+|-..+++++|...+......+.. |...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 455677888887777776554 334445555666666677777777777776664432 444455566777777888888
Q ss_pred HHHHHHHHH
Q 009011 496 CSFFEEMIS 504 (546)
Q Consensus 496 ~~~~~~m~~ 504 (546)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 887777775
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.63 E-value=0.045 Score=39.62 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=6.9
Q ss_pred HHHHHHcCChHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFE 500 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~ 500 (546)
...+...|++++|.++++
T Consensus 53 g~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 53 GECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333333333333333333
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.54 E-value=0.92 Score=35.92 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
.....+..+.+.|.-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44556666777777777777777776533 567777777777788888888888777777776643
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=3.5 Score=42.60 Aligned_cols=309 Identities=12% Similarity=0.095 Sum_probs=168.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN---SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.++..+...+.+..|+++-..+...-... ...|.....-+.+.. +.+.+..+-+++.... .....|..+..-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 45677777888888888877774221112 455555555555542 2222333333333221 344557777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCCCHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFS----PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-----------CKPSVITYTIVM 343 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----------~~p~~~~~~~li 343 (546)
+|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+...- .+.....|.-++
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~ 599 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM 599 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 88888887776643322211 112233444555566677776666665555431 111111122111
Q ss_pred H--------HHHhcCCHHHHHHHHH--HH----HhCCCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHH
Q 009011 344 H--------ALGKAKQINEALKVYE--KM----KSDDCLPDTSFYSSLIFILSKAGRVK----------DANEIFEDMKK 399 (546)
Q Consensus 344 ~--------~~~~~g~~~~a~~~~~--~~----~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~~~~~~~ 399 (546)
+ .+.+.++-.++..-|. .. ...+..|+ .......+.+..... +-..+.+.+..
T Consensus 600 r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~ 676 (829)
T KOG2280|consen 600 RHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED 676 (829)
T ss_pred Hhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 0011111111111111 00 00111222 223334444443311 11222222221
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 400 -QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 400 -~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
.|......+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++.+++-+.+. .+.-
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIG 746 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIG 746 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCC
Confidence 2323334455666667788899999998887764 5788899999999999999998877766554 2456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHH
Q 009011 479 YASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
|.-.+.+|.+.|+.++|.+++.+.. |. . -...+|.+.|++.+|.++-
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~--~l---~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVG--GL---Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccC--Ch---H----HHHHHHHHhccHHHHHHHH
Confidence 7788999999999999999987763 21 1 4566677777777766553
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.52 E-value=2.6 Score=40.89 Aligned_cols=147 Identities=12% Similarity=0.185 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 301 VVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
...|...|+...+..-++.|..+|-+..+.| ..+++..++++|..++ .|+..-|.++|+.-...- +.+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456666666666666777777777777766 5566666677766654 366666777776544331 112222234455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPN--VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
.+...++-+.|..+|+...++ +..+ ...|..+|.--..-|+...+..+-+.|.+. .|...+...+...|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 556667777777777744331 1112 345666666666667777666666666553 455444444444443
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.51 E-value=0.28 Score=44.07 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 403 VPNVLTYNTMISSACA-----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 453 (546)
+.|..+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 4466777777766643 35566667777888888888888888888877654
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=95.51 E-value=0.51 Score=39.23 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
-.+.+.|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|...|.......+.|+..+.-...+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445666777776666665443 23344444555555556666666666655433223444445556666677777777
Q ss_pred HHHHHHHHHH
Q 009011 285 AQKAMKEMFQ 294 (546)
Q Consensus 285 a~~~~~~m~~ 294 (546)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777766665
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.44 Score=42.00 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMD 188 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~ 188 (546)
.|..-..+|...++++.|..-+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444455555566666555554443
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.43 E-value=1.1 Score=45.18 Aligned_cols=161 Identities=14% Similarity=0.216 Sum_probs=93.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLS-------SQIFNILIHGWCK----TRKVDDAQKAMKEMFQQGFSPDVVSY 304 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~ 304 (546)
..++....=.|+-+.+.+.+.+..+..... ...|+..+..++. ..+.+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344455555667777777666554321111 1224444444443 34677788888888775 3555555
Q ss_pred HHHH-HHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-H
Q 009011 305 TCFI-EHYCREKDFRKVDDTLKEMQEKG---CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI-F 379 (546)
Q Consensus 305 ~~li-~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~ 379 (546)
...- +.+...|++++|.+.|+...... .+.....+--+...+.-..++++|.+.|..+.+.. ..+..+|..+. .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4332 45556788888888888655321 11123344455666777888888888888888764 23344444333 3
Q ss_pred HHHhcCCH-------HHHHHHHHHHHH
Q 009011 380 ILSKAGRV-------KDANEIFEDMKK 399 (546)
Q Consensus 380 ~~~~~g~~-------~~A~~~~~~~~~ 399 (546)
++...|+. ++|.++|.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 34456666 788888877653
No 240
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.36 E-value=0.07 Score=38.60 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 476 AGTYASLVRGLIESGKLELACSFFEEMISK--GIVPY----HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 476 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
..+|+.+...|...|++++|...|++..+. ...++ ..++..+..++...|+.++|.++++...++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 356788888999999999999999987754 12222 45677888899999999999999998876544
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.34 Score=46.10 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCC-------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNN-------------GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR 233 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~-------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 233 (546)
-...|.+.|++..|...|+.....-. ...-..+++.+..++.+.+++.+|++.-+.....+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 34567788889888888877544110 01112345555556666666666666666655543 55555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA-QKAMKEMFQ 294 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 294 (546)
.+-.-..++...|+++.|...|+++.+-.|.|..+-+.|+.+-.+.....+. .++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555556666666666666666666655555555555555555544443332 445555543
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.23 E-value=0.55 Score=45.84 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSS---QIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+...++.+..+|.+.|++++|...|++.....|.+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777665555554 34777777777777777777777777664
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=2.1 Score=37.93 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK 383 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 383 (546)
|..-..+|....++++|...+.+..+. .+.+...|. . ...++.|.-+.+++.+. +.-...|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666667777776666555422 111211121 1 12234444444444442 1223445555566666
Q ss_pred cCCHHHHHHHHHHH
Q 009011 384 AGRVKDANEIFEDM 397 (546)
Q Consensus 384 ~g~~~~A~~~~~~~ 397 (546)
+|.++.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 66666555555443
No 244
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.17 E-value=0.37 Score=46.98 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT----RALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
.+.+...++.+...|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|.+.+++..+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999999999999998875 4553 4589999999999999999999988876
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.17 E-value=1.5 Score=36.00 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555544 23444555555555543
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.16 E-value=0.69 Score=36.49 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=64.5
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH---HHHHHHHHHhcCC
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-GFSPDVVS---YTCFIEHYCREKD 316 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~---~~~li~~~~~~g~ 316 (546)
+++..|+++.|.+.|.+...-.|.....||.-..++.-.|+.++|++-+++..+. |.+ +-.. |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 4667788888888888877777788888888888888888888888888887765 332 2222 2222334666777
Q ss_pred hhHHHHHHHHHHHcC
Q 009011 317 FRKVDDTLKEMQEKG 331 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g 331 (546)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 787777777766665
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.09 E-value=5.6 Score=43.54 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=34.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009011 413 ISSACARSEEENALKLLQKMEEDLCKPDCE--TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESG 490 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 490 (546)
+.+|...|+|.+|+.+..++... -+.. +-..|..-+...++.-+|.++..+.... ..-.+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 34444455555555554444221 1111 1133444455555555555555444321 122344455555
Q ss_pred ChHHHHHHHHH
Q 009011 491 KLELACSFFEE 501 (546)
Q Consensus 491 ~~~~A~~~~~~ 501 (546)
.+++|.++...
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 56666555443
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.00 E-value=2.6 Score=37.90 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
..|+.-+. -.+.|++++|.+-|+.+..+.+ .+....+.-.++-++-+.+++++|+..+++..+.-..-....|..-|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444433 3467888888888888876432 234566777777778888888888888888765432222233444444
Q ss_pred HHHcc-------CCHHHHHHHH---HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 241 TLVKG-------NSVEHAYKVF---LEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH 310 (546)
Q Consensus 241 ~~~~~-------g~~~~a~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 310 (546)
+++.- .+...+...+ +++....|.+.. ...|...+..+... =...=-.+.+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y--------------a~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY--------------APDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc--------------hhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 43321 1222222222 222223332221 11222222222110 00000123355
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 311 YCREKDFRKVDDTLKEMQEKGCKPS---VITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 66777777777777777765 2211 22344455666666766666665444443
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.59 Score=44.53 Aligned_cols=140 Identities=12% Similarity=-0.004 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 342 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
-...+.+.|++..|..-|++....= . |.+.-+.++..... . .-..+++.+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhhh
Confidence 3467888899999988888865420 0 00111111111111 0 112344455555666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHH
Q 009011 422 EENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL-ACSFFE 500 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 500 (546)
+.+|++.-.+..+.+ ++|....-.=..+|...|+++.|...|+++.+..+. |..+-+.++..--+..+..+ ..++|.
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665554 445555555555666666666666666666665433 33344444444333333332 255555
Q ss_pred HHHH
Q 009011 501 EMIS 504 (546)
Q Consensus 501 ~m~~ 504 (546)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 5553
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=3.3 Score=38.58 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK---GCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
.|++.+|-..++++.+.-+ -|..+++..=.+|.-.|+.+.-...++++... +++-....-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555555422 25555555555666666666555555555543 1111111112222233455566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
++.-++..+.+ +.|.-...+....+--.|++.++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66655555543 33444445555555555666666555444
No 251
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.86 E-value=3.5 Score=38.72 Aligned_cols=128 Identities=16% Similarity=0.301 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCC--
Q 009011 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR--EK----DFRKVDDTLKEMQEKG---CKPSVITYTIVMHALGKAKQ-- 351 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~-- 351 (546)
++...+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++.. ..++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666666555444332221111 11 1344556666666542 12233334333322 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 352 --INEALKVYEKMKSDDCLPD--TSFYSSLIFILSKAGR--VKDANEIFEDMKKQGVVPNVLTYNTM 412 (546)
Q Consensus 352 --~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l 412 (546)
.+.++.+|+.+.+.|+..+ ....+.++........ ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2344555555555554422 2222222222221111 23455555555555555555544443
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.68 E-value=2.2 Score=35.65 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH-HHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR-ALSVL 238 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l 238 (546)
+...|..-++ +++.++.++|+.-|.++.+.+.+....-..-.......+.|+...|+..|+++-...-.|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445544443 456677788888888887755222223333334455667788888888888886544334332 12222
Q ss_pred H--HHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 239 M--DTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 239 l--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
= -.+...|.++......+-+.. +.|.....-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 234566777777766666543 45555556667777777788888888888777654
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.58 E-value=1.3 Score=40.05 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-CCCHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG-V-EKDTRALSVLM 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~-~~~~~~~~~ll 239 (546)
.|+.-++.| +.|++..|...|....+..+ ......++..|...+...|++++|..+|..+.+.- - +.-+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577777766 56669999999998887432 34567788889999999999999999999887632 1 22346777788
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIF 269 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 269 (546)
.+..+.|+.++|..+|+++.+..|.+..+-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888889999999999998888777765543
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.77 Score=47.77 Aligned_cols=246 Identities=15% Similarity=0.209 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH----HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD----TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
.....-+..+.+...++-|+.+-+.- ..|..+...+.. -+-+.|++++|...|-+...-+.++ .+|
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHH
Confidence 34455578888888888888876553 334444444443 3456799999988886665544433 456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN 353 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 353 (546)
.-|....++.+--.+++.+.+.|.. +...-+.|+.+|.+.++.++..++.+... .|..- .-....+..|.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHH
Confidence 6777788888888889999988886 66667889999999999998887776654 33211 11345677777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+|..+-.+... +......+ +-..+++++|.+.+..+.-...-+....|. ..+. ...+++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyG---k~Ll-~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYG---KILL-EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHH---HHHH-hhChHHHHHHHHHHH
Confidence 87766554433 23333433 445688999999988763211111222222 2222 246677777766665
Q ss_pred HCCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHh
Q 009011 434 EDLCKPDCETYAPLLK-----MCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 434 ~~~~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~m~~ 469 (546)
....+++.......+. ...-.+++.....+++.|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 5433444333332222 22335667777777776765
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=1.6 Score=40.47 Aligned_cols=155 Identities=8% Similarity=-0.111 Sum_probs=100.1
Q ss_pred HHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHccC
Q 009011 170 VLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY---GVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g 246 (546)
.+-..|++.+|-..++++.+ . .|.+.-+++-.=.++.-+|+.+.-...++++... +++.....-....-++...|
T Consensus 112 i~~~~g~~h~a~~~wdklL~-d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLD-D-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHH-h-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34456777777777888777 3 5666667777777788888888888888877543 22222222234444566778
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~l 323 (546)
-+++|++.-++..+-.+.|...-.++.+.+--.|++.++.+++.+-...=-.-+ ..-|-...-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888877776777777788888888888888888877665432200000 11122222345566788888888
Q ss_pred HHH
Q 009011 324 LKE 326 (546)
Q Consensus 324 ~~~ 326 (546)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 865
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.33 E-value=1.3 Score=35.99 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=53.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK 244 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 244 (546)
-.....+.|++++|.+.|+.+..+-+ ++-...+.-.++.+|.+.|++++|+..+++.++....--..-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34445578899999999999887532 2345677778888999999999999999988875432222334444444443
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=94.32 E-value=4.6 Score=39.76 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 009011 176 KFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVR---------GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKG 245 (546)
Q Consensus 176 ~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 245 (546)
..+.|..+|.+...... .|.....|..+..++.. .....+|.++-++..+.+ +-|..+...+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34567777777762110 23334444333332221 122344555555555554 55666666666555556
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
++.+.|...|++...-.|....+|....-...-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 66666666666666555555566665555566666666666666665444
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=3.4 Score=43.31 Aligned_cols=254 Identities=14% Similarity=0.184 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR----LVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
.......-++++.+...++.|..+-+. ...+..+...+... +.+.|++++|...|-+-... ++|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~------~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s---- 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS------QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS---- 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH----
Confidence 445667788999999999988877642 33445554444444 45689999999988776532 2332
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
.++.-+.....+.....+++.+.+.--.+...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+
T Consensus 402 -~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 -EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 234445555666666677777766545566778899999999999998877766554 2221 112344566777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
-.++|.-+-..... .......++ -..+++++|++++..+.-....+....|...+ . ...+++-..++-
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili 545 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILI 545 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHH
Confidence 77777665544332 333444443 45689999999998764322222222332222 1 234556555555
Q ss_pred HHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 396 DMKKQGVVPNVLTYNTMIS-----SACARSEEENALKLLQKMEEDLCKPDCE 442 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 442 (546)
+.......++.......+. ...-.+++.....+++.|.+. .|+..
T Consensus 546 ~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~--s~~s~ 595 (933)
T KOG2114|consen 546 ELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI--SPDSE 595 (933)
T ss_pred HHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc--CCCch
Confidence 5543222222222222111 223356777777788888886 55553
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.05 E-value=5.2 Score=37.36 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQIN---EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMIS 414 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 414 (546)
++..++.+|...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+.+.+++..|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4555666666666543 4555555554432 2223444444555556777777777777777632 112233444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 415 SA---CARSEEENALKLLQKMEEDLCKPDC 441 (546)
Q Consensus 415 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 441 (546)
.+ .. .....|...+..+....+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33 22 2344555666555544444444
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=93.96 E-value=4.9 Score=39.53 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 352 INEALKVYEKMKSD-DCLPD-TSFYSSLIFILSKA---------GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS 420 (546)
Q Consensus 352 ~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 420 (546)
.+.|..+|.+.... ...|+ ...|..+..++... ....+|.++.+...+.+. -|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 45666667766611 12232 44444444443321 123445555555555443 25555555555555556
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009011 421 EEENALKLLQKMEEDLCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470 (546)
Q Consensus 421 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 470 (546)
+.+.|..+|++....+ || ..+|......+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6777777777666642 33 334444444455566777777776665554
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.74 E-value=7.3 Score=38.01 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=81.2
Q ss_pred HHHcCCChHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH--
Q 009011 170 VLGKSKKFCLMWELVKEMDELNNGYVSL------ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT-- 241 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-- 241 (546)
.+.+.+++.+|.++|.++-+.. ..+. ..-+.++++|..+ +.+.....+....+. .| ...|..+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 4567889999999999888732 2232 2234555666543 444444444444432 22 2233333333
Q ss_pred HHccCCHHHHHHHHHHhhcCC----CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCI----PL-----------SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG----FSPDVV 302 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~----~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~ 302 (546)
+-+.+.+++|.+.+....+.. ++ +...-+..++++.+.|++.+++.+++++...= ..-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 346778888888775554321 11 11123566778888888888888888877643 336777
Q ss_pred HHHHHHHHHHh
Q 009011 303 SYTCFIEHYCR 313 (546)
Q Consensus 303 ~~~~li~~~~~ 313 (546)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88776555544
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.74 E-value=0.89 Score=41.74 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK-----YGVEKDTRALS 236 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 236 (546)
.++..++..+..+|+++.+.+.++++.. . .+.+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~-~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE-L-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh-c-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4678899999999999999999999988 4 788999999999999999999999999998864 57788777666
Q ss_pred HHHHH
Q 009011 237 VLMDT 241 (546)
Q Consensus 237 ~ll~~ 241 (546)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.54 E-value=3 Score=33.01 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=48.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCC
Q 009011 345 ALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT---YNTMISSACARSE 421 (546)
Q Consensus 345 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~ 421 (546)
+++..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666655542 33556666666666666666666666666554321112221 1122223445566
Q ss_pred HHHHHHHHHHHHHCC
Q 009011 422 EENALKLLQKMEEDL 436 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~ 436 (546)
-+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655554
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.54 E-value=8.1 Score=38.29 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPL--SSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+..++-+.|+.++|.+.+.++.+..|. ...+...|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444444556666666666665543332 233455666666666666666666666543
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.53 E-value=4.7 Score=35.15 Aligned_cols=118 Identities=21% Similarity=0.216 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHhcCCChHHHHHHHhcCCCCCCHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHH
Q 009011 94 ETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMH-TPEMYNTMVDVLG 172 (546)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~-~~~~~~~ll~~~~ 172 (546)
+..+.+++.+|....-.+++--..+-+.|+--+.--+ +..|.--|..+. .+.| -+.+||.|.-.+.
T Consensus 44 EV~iarlsqlL~~~~l~~eeRA~l~fERGvlYDSlGL----------~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~ 110 (297)
T COG4785 44 EVILARMSQILASRALTDEERAQLLFERGVLYDSLGL----------RALARNDFSQAL---AIRPDMPEVFNYLGIYLT 110 (297)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHhcchhhhhhH----------HHHHhhhhhhhh---hcCCCcHHHHHHHHHHHH
Confidence 4457888888877666666544444456655443322 222222222222 2233 3567888888888
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
..|+++.|.+.|+...+.. ..-+-...|.-|. +.-.|++.-|.+-|...-+.
T Consensus 111 ~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hcccchHHHHHhhhHhccC-CcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 8888888888888887733 2223333333333 23457777777766666543
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.46 E-value=5.2 Score=35.39 Aligned_cols=188 Identities=15% Similarity=0.101 Sum_probs=86.4
Q ss_pred CChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 211 GRYDDAVEAFRGMKKYGVE-KDTRALSVLMDTLVKGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
+....+...+......... .....+......+...+.+..+...+..... ..+.....+..+...+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444432211 1234445555555556666666555555443 334444555555555556666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIE-HYCREKDFRKVDDTLKEMQEKGC--KPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666655543222 111111112 45555666666666655533111 01222222223334445555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 365 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
.........+..+...+...++++.|...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 32111234444444445555555555555555443
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.42 E-value=9.8 Score=38.52 Aligned_cols=132 Identities=9% Similarity=0.073 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
...|+.+|.---.....+.+..+++.+.. . .|.-...|......-.+.|..+.+.++|++-.. |++-....|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~-k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLS-K-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHh-h-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 33455555555555556677777777775 2 444455565666666677888888888888765 45666666655554
Q ss_pred HHH-ccCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 241 TLV-KGNSVEHAYKVFLEFKDCIP---LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 241 ~~~-~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.++ ..|+.+.....|+....... .+...|...|..-..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 443 45777777777777665222 34556788888878888888888888888874
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=1 Score=40.73 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIP---LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
|..++...|+.+.|..+|..+.+..| .-+.....|..+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444443333222 1123333333444444444444444444443
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.78 E-value=6.5 Score=34.70 Aligned_cols=225 Identities=16% Similarity=0.057 Sum_probs=144.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK-GCKPSVITYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~ 356 (546)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666666553321 3566677777788888888888888777652 23335556666677777778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIF-ILSKAGRVKDANEIFEDMKKQGV--VPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877754333 122222223 67788888888888888755221 1123333444444566778888888888887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 434 EDLCKP-DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 434 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
... .. ....+..+...+...++.+.+...+......... ....+..+...+...|..+++...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 753 22 3566777777777788888888888887775333 23444444445556667888888777777543
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.66 E-value=0.34 Score=30.34 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=7.6
Q ss_pred HHHHHhcCChHHHHHHHHHh
Q 009011 204 MRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m 223 (546)
...|.+.|++++|.++|++.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.61 E-value=0.44 Score=29.84 Aligned_cols=41 Identities=2% Similarity=-0.120 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIM 204 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li 204 (546)
.++..+...|.+.|++++|.++|+++.+ . .|.+...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~-~-~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA-L-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CcCCHHHHHHhh
Confidence 4677899999999999999999999998 4 666777765543
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.49 E-value=2.3 Score=36.49 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD--VVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
.+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777777777777777777777776543332 34555666667777777777766666554
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.47 E-value=1.5 Score=40.35 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE-----KGCKPSVITYTIVM 343 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~~~~~li 343 (546)
+..++..+..+|+.+.+...++++....+- +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 344444444444444444444444443222 444444444455555544444444444433 24555444444444
Q ss_pred HH
Q 009011 344 HA 345 (546)
Q Consensus 344 ~~ 345 (546)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.25 E-value=9.8 Score=35.99 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQG-----FSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE----KGCKPSVITY 339 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~~~~~ 339 (546)
..++..++...+.++++++.|+...+-- .......|..|-..|.+..|+++|.-+.....+ -++.--...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345555555556666666666554321 111233455666666666666666555443332 1222111122
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 340 TI-----VMHALGKAKQINEALKVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 340 ~~-----li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
.. +.-++...|.+..|.+.-++..+. |-. .-......+.+.|...|+.+.|+.-|++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 223455666666666666555432 311 112233445566667777777766666543
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.76 E-value=24 Score=38.97 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 512 STYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.....++.++...|+.+.|.++.+....
T Consensus 1185 ~E~~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1185 NELKRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3455778888888999988887666543
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.66 E-value=6.3 Score=32.06 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=33.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 381 LSKAGRVKDANEIFEDMKKQGVV--PNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
..+.|++++|.+.|+.+..+-.. -....--.++.+|.+.+++++|...+++.++.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34566777777777776654211 123344556666677777777777777766653
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.30 E-value=8.1 Score=32.57 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+++.+.+.+++|+...+..+++.+.+.|++... ..+...++-+|.......+-.+. +....+.++--+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 334444455555555555555555555554432 23333344444433333322222 1222233333333221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
=...+..++..+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0013344445555556666665555543
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.60 E-value=9.5 Score=32.16 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=82.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
.+.+..+.+.++.|+...|..+++.+.+.|++... .++...++-+|.......+-.+.. ....+.++=-.|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34556666778888888888888888888886654 445556666666555544433322 233333333333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 366 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
= ...+..+++.+...|++-+|.++.+.... .+......++.+..+.++...-..+++-..+.
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 01345677788888998888888876532 12233355667777777766655555555443
No 279
>PRK09687 putative lyase; Provisional
Probab=90.58 E-value=15 Score=34.33 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCC
Q 009011 300 DVVSYTCFIEHYCREKDF----RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI-----NEALKVYEKMKSDDCLPD 370 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~ 370 (546)
|...-...+.++...|+. +++...+..+... .++...-...+.+++..+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444444455555542 3455555544322 23444444444554443321 122222322222 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS-EEENALKLLQKMEEDLCKPDCETYAPLLK 449 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 449 (546)
..+-...+.++++.++ +++...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++...-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555566666666665 3455555555542 34444444444444432 13345555555553 345556666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 450 MCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
++.+.|+.+ +...+-...+.+ + .....+.++...|.. +|...+..+.+.. ||..+-...+.+|.
T Consensus 215 aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 777776643 443333333332 2 233566777777775 5777777777533 46666655555553
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.35 E-value=21 Score=35.63 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP-NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-CETYAPL 447 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 447 (546)
-..+-..+..+.-+.|+.++|.+.+.+|.+..... .......|+.++...+.+.++..++.+-.+...+.+ ..+|+..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 34444556677778888888888888887543221 233556678888888888888888887654332222 2445544
Q ss_pred H
Q 009011 448 L 448 (546)
Q Consensus 448 l 448 (546)
+
T Consensus 338 L 338 (539)
T PF04184_consen 338 L 338 (539)
T ss_pred H
Confidence 4
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.22 E-value=9.7 Score=31.69 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~ 294 (546)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.96 E-value=5.1 Score=34.37 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN--VLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555555554322222 1233444455555555555555554443
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=2 Score=39.49 Aligned_cols=101 Identities=12% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 227 GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC----IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV 302 (546)
Q Consensus 227 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 302 (546)
|.+....+...++.......+++.+...+-+++.. ..++. +-.++++.+.+ -+.++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 33444444445555444455566665555555431 00111 11122222222 23345555555555555555555
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+++.+|+.+.+.+++.+|..+.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 555555555555555555555544443
No 284
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.74 E-value=16 Score=33.60 Aligned_cols=114 Identities=13% Similarity=0.192 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHcc-C-CHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 212 RYDDAVEAFRGMKK-YGVEKDTRALSVLMDTLVKG-N-SVEHAYKVFLEFKDC--IPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 212 ~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
...+|+.+|+...- ..+-.|..+...++...... + ....-.++.+-+... ..++..+.-.++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666664321 23456666666666665542 1 222222333333322 3445556666667777777777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009011 287 KAMKEMFQQ-GFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 287 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (546)
++++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666665544 455566667777777777777655554444
No 285
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=89.74 E-value=12 Score=39.03 Aligned_cols=116 Identities=13% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN----DVSMDAGTY 479 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~ 479 (546)
.+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+..+.+.|+.+.+..+.+.+.+. |...+....
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 3445556666777777777777777766644321 2234556666667777766666555555432 211111111
Q ss_pred HHH---------HHHH---------HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 480 ASL---------VRGL---------IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 480 ~~l---------i~~~---------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
+.+ +..| .+.|++.+|.+.+-.+...++.|...-...+.++.
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ------------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 111 1111 23467777777777777777777666555555543
No 286
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=3.9 Score=41.18 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=91.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
..|+++.|..++..+. ...-+.++..+.+.|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 3455555554443322 224455666667777777666542 22211 1233457788888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009011 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV 472 (546)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 472 (546)
+..+.. +..-|..|..+....|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 766543 567788888888888888888888876543 44566666777777666666666655543
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 473 SMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 473 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
. |.-.-+|...|+++++.+++.+-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 3 23344556678888877776543
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=6.2 Score=39.85 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=106.9
Q ss_pred HcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 172 GKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
.-.|+++.|..++..+. ....+.++..+-++|..++|+++ .+|..- -.....+.|+++.|
T Consensus 597 vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred hhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHH
Confidence 34578888877665444 33455567777778888888765 222221 12334678999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 331 (546)
.++..+.. +..-|..|.+...+.|++..|.+.|....+ |..|+-.+...|+-+....+-....+.|
T Consensus 657 ~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 657 FDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 98876654 556699999999999999999999887764 4567777888888887777777777776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 332 CKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
.. |. ..-+|...|+++++.+++.+-
T Consensus 723 ~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 44 33 224566789999998887654
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.52 E-value=0.39 Score=28.07 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=17.3
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 259 KDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
.+..|.+...|+.+...|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3345666666666666666666666654
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.50 E-value=0.94 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
+|..|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777743
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.38 E-value=30 Score=36.06 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHhhh
Q 009011 177 FCLMWELVKEMDELNNGYVSLATMSTIMRR-LVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 177 ~~~a~~l~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 225 (546)
...|.+.++...+.+....-...=.....+ +....+.+.|+.+|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 456777777776644111111111111222 3345677778888877755
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.71 E-value=1.1 Score=26.54 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666777777777776663
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=1.9 Score=39.69 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=72.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH
Q 009011 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN--GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT 232 (546)
Q Consensus 155 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (546)
.|..++..+-..++..-....+++.+...+-++..... ..+++..+ ++++.+. .-++++++-++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 45555555666677777777778888877777655210 11222222 2244333 33677899888888889999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
.+++.+++.+.+.+++.+|.++...+..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999888877654
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.54 E-value=28 Score=34.74 Aligned_cols=181 Identities=8% Similarity=0.028 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTM 412 (546)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 412 (546)
..|.....+++..++..-...-++.+..+|...| .+-..|..++.+|... ..++-..+|+.+.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3355566677777777777777777777777765 4566777777887777 556677777777765443 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 009011 413 ISSACARSEEENALKLLQKMEEDLCKP--D---CETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSMDAGTYASLVRGL 486 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~ 486 (546)
..-|-+ ++.+.+..+|.++...=++- + ...|..+... -..+.+....+..++.+ .|...-...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 67777777777776542210 1 1233333321 13456666666666665 44444455555666667
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
....++++|++++....+.. .-|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 77777888888887776653 12333333444443
No 294
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.25 E-value=32 Score=35.04 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 009011 336 VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV--PNVLTYNTMI 413 (546)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li 413 (546)
..+|...+.--.+.|+.+.+.-+|+...-.- ..=...|--.+.-....|+.+-|..++....+-.++ |....+.+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3455555555555666666655555544210 111122222233333335555555555444332222 1122222221
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHH---HHHHHHHhCCCCCCHHHHHHHHHH----
Q 009011 414 SSACARSEEENALKLLQKMEEDLCKPDCE-TYAPLLKMCCRKKRMKVLN---FLLTHMFKNDVSMDAGTYASLVRG---- 485 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~~~~~li~~---- 485 (546)
.-..|+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++....+... +..+...+.--
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARL 449 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHH
Confidence 122456666666666665542 3321 1112223344555555555 22222222111 11122222111
Q ss_pred -HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 486 -LIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 486 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
+.-.++.+.|..++.+|.+. ++++...|..+++.+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 12245666666666666544 3344444555554443
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.20 E-value=3 Score=31.03 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
++.+-++.+....+.|++....+.+.+|-+.+++..|.++++.++.....+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34445555555566777777777777777777777777777766644333444455444
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.11 E-value=26 Score=33.83 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
..+..+.|+++...+....... ..+....+..+... +.|+++++....+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNE---DSPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccC---CChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 4455566666664444444332 12233333333322 6666776666666554
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.04 E-value=39 Score=35.72 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHhhhC
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR-------YDDAVEAFRGMKKY 226 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 226 (546)
.+| .+|-.|.|+|.+++|.++..+... . .......+-..+..|....+ -++...-|++..+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-Q-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-G-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-h-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 455 678889999999999999966554 2 33334455555777766422 23445555555543
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.81 E-value=18 Score=31.70 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
|-+..|+-=|.+... - .|.-+..||-+.-.+...|+++.|.+.|+...+....-+-...|.-+ ++--.|+.+-|.+-
T Consensus 79 GL~~LAR~DftQaLa-i-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALA-I-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhh-c-CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 333444444444444 2 44557788888888888999999999998887653222222222222 23345778888777
Q ss_pred HHHhhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009011 255 FLEFKDCIPLSSQ--IFNILIHGWCKTRKVDDAQKAMK-EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331 (546)
Q Consensus 255 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 331 (546)
+...-...|.|+. .|--++. ..-+..+|..-+. +... .|..-|...|-.|.- |++. ...+++.+....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7666655554542 2222221 2234445543332 2222 254555544433322 1111 112233322211
Q ss_pred CC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 332 CK------PSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 332 ~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
-. .=..||--+.+-+...|+.++|..+|+-.+..
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 00 01234555566666667777777666665543
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.79 E-value=0.93 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=18.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 009011 465 THMFKNDVSMDAGTYASLVRGLIESGKLELAC 496 (546)
Q Consensus 465 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 496 (546)
++.++..+. +...|+.+...|...|++++|.
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 334444433 5666666666666666666664
No 300
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.55 E-value=26 Score=33.27 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=21.1
Q ss_pred ccCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDC---IPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
...+.++|...+.+.... ......++..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 445555555555443321 11223345555556666665555443
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.98 E-value=17 Score=30.58 Aligned_cols=15 Identities=0% Similarity=0.140 Sum_probs=5.8
Q ss_pred CChhHHHHHHHHHHH
Q 009011 315 KDFRKVDDTLKEMQE 329 (546)
Q Consensus 315 g~~~~a~~l~~~m~~ 329 (546)
+..++|+.-|.++.+
T Consensus 72 ~k~d~Alaaf~~lek 86 (221)
T COG4649 72 NKTDDALAAFTDLEK 86 (221)
T ss_pred CCchHHHHHHHHHHh
Confidence 333333333333333
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.83 E-value=8.7 Score=29.02 Aligned_cols=60 Identities=10% Similarity=0.218 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++++.++.........|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455556666666677888888888888888888888888888776644433335655553
No 303
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=86.58 E-value=23 Score=31.53 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 417 (546)
.....+..|.+.-++..|....+++.+. ... .+.+--|.+..+-.--.++.+-....+++-+.....+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiEP-----IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIEP-----IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhhh-----HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 4455566777777777776666666542 222 223334556555555555555555556655555555554 45
Q ss_pred hcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009011 418 ARSEEENALKLLQKMEED-L-----------CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG 485 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~-~-----------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 485 (546)
..|+..+|+..++.-... | -.|.+.....++..| ..+++++|.+++.++.+.|+.|.. ..+.+.+.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 678888888887765432 1 256666667777655 456788888888888888887543 33444444
Q ss_pred H
Q 009011 486 L 486 (546)
Q Consensus 486 ~ 486 (546)
+
T Consensus 282 ~ 282 (333)
T KOG0991|consen 282 V 282 (333)
T ss_pred H
Confidence 3
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.39 E-value=5.6 Score=29.66 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
-++.+-++.+...+..|++....+.+++|.+.+++..|.++++-++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555666666667777777777777777777777777777665
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.99 E-value=34 Score=33.00 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
+.+..+.|+++...+........ .++...+..+... +.++.+++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 56677888888855555554422 2345555555433 77888888888766543
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.49 E-value=12 Score=28.40 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+..+-++.+...+..|++....+.+++|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555666677777777777777777777777777766654
No 307
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.27 E-value=31 Score=31.87 Aligned_cols=86 Identities=13% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHCCCCC
Q 009011 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN-DVSMDAGTYASLVRGLIESGKLELACSFFEE-----MISKGIVP 509 (546)
Q Consensus 436 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p 509 (546)
+..++..+...++..++..+++....++|+..... ++.-|...|..+|......|+..-..++.++ .+..|+..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 34667777777888888888888888888777664 5666778888888888888887666665554 22334555
Q ss_pred CHHHHHHHHHHH
Q 009011 510 YHSTYKMLEEKL 521 (546)
Q Consensus 510 ~~~~~~~l~~~~ 521 (546)
+...-..+-+.+
T Consensus 277 ~~~L~~~L~~LF 288 (292)
T PF13929_consen 277 TDELRSQLSELF 288 (292)
T ss_pred CHHHHHHHHHHH
Confidence 555544444444
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.21 E-value=57 Score=34.02 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcC-----C
Q 009011 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDV-LGKSKKFCLMWELVKEMDEL---NNGYVSLATMSTIMRRLVRGG-----R 212 (546)
Q Consensus 142 ~~a~~~f~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~l~~~m~~~---~~~~~~~~~~~~li~~~~~~g-----~ 212 (546)
..++.+++.+........-...-...... ++..++++.|...|+.+.+. ....-.......+...|.+.. +
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 34566666655322211111111222233 55677899999999888661 001112334455566666543 5
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----hcCCHHHHHH
Q 009011 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK-GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC----KTRKVDDAQK 287 (546)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~ 287 (546)
.+.|+.+|.+..+.| .|+...+...+..... ..+...|.++|........... +-.+..+|. -..+.+.|..
T Consensus 309 ~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A--~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 309 YEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA--IYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH--HHHHHHHHHhCCCcCCCHHHHHH
Confidence 566888888877766 5555544433333322 2456677777766654222222 222222222 1235667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (546)
++++..+.|. |...--...+..+.. ++++.+.-.+..+.+.|.
T Consensus 386 ~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 386 YYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777766652 221111122223333 566666666665555543
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.19 E-value=2.9 Score=25.30 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777778888888888888777654
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=67 Score=34.04 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=62.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
-++.+.+.+.+++|+++-+......+...........|..+.-.|++++|-...-.|.. .+...|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 35667788888888888776654211112455666678888888888888887777752 33444444444444444
Q ss_pred CHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHh
Q 009011 247 SVEHAYKVFLEFKDCIP-LSSQIFNILIHGWCK 278 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~ 278 (546)
+... ++.-+..+.+ .+..+|..++..+..
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 4432 2222333222 455667777776666
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.00 E-value=3.3 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhh
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
.+++.+...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666667777777776666654
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.28 E-value=26 Score=28.75 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
.++++++..+++.|....+..+...++... .+...|++++|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 677777777777777644444444454433 355677788888887777654
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.71 E-value=0.33 Score=40.07 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009011 412 MISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGK 491 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 491 (546)
++..+.+.+.++.+..+++.+...+...+....+.++..|++.+..+....+++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4556666777777777777777665455667777777777777776776666652111 222355666677777
Q ss_pred hHHHHHHHHHHH
Q 009011 492 LELACSFFEEMI 503 (546)
Q Consensus 492 ~~~A~~~~~~m~ 503 (546)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777776653
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.66 E-value=28 Score=28.61 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+...|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 33445555555555554443
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.18 E-value=12 Score=32.76 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND--VSMDAGTYASLVRG 485 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~ 485 (546)
|.+..++.+.+.+...+|+...++-.+.+ +-|..+-..+++.+|-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888899999999998877763 4455666778889999999999998888766632 33445667766654
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.11 E-value=5.2 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45667777777888888888888777643
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.07 E-value=36 Score=29.53 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPN-----VLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-CETYAPLLKMCCR 453 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 453 (546)
-+.+.|++++|..-|...++.- ++. .+.|..-..++.+.+.++.|++--.+.++.+ |+ ......-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 3455666666666666655431 111 1223333344555555666555555555542 21 1122222234555
Q ss_pred cCChHHHHHHHHHHHhCC
Q 009011 454 KKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 454 ~g~~~~a~~~~~~m~~~~ 471 (546)
...++.|..-++.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 555555555555555543
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.50 E-value=0.54 Score=38.77 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 342 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.. +......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555566666666666665544445666666666666665555555555411 11222334444555555
Q ss_pred HHHHHHHHHH
Q 009011 422 EENALKLLQK 431 (546)
Q Consensus 422 ~~~A~~~~~~ 431 (546)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.45 E-value=38 Score=29.48 Aligned_cols=71 Identities=7% Similarity=-0.010 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 179 LMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY---GVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 179 ~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
.|.+.|-.+...+ ...++.....+...| -..+.++++.++....+. +-.+|+..+..|...+-+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~~-~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTP-ELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCC-CCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444554444422 223333333333333 344555555555554331 1234445555555555555554444
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.44 E-value=13 Score=32.56 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=25.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 255 (546)
.++.+.+.+...+++.+.++-.+.. +-|..+-..++..+|-.|++++|..-+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHH
Confidence 3444455555555555555444432 333344444555555555555554433
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.22 E-value=11 Score=35.34 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=23.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVP-NVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
-|.+.|.+++|.+.|...... .| +.+++..-..+|.+...+..|..-..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 355555555555555544422 23 44444444455555555544444333
No 322
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.16 E-value=6.5 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
|..+...+...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.86 E-value=37 Score=28.35 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=23.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNT-MISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
+.++.+++..++..+.-. .|....... -...+...|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345555555555555432 222221111 112234555666666666665443
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.75 E-value=26 Score=30.51 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHH
Q 009011 389 DANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED---LCKPDCETYAPLLKMCCRKKRMKVL 460 (546)
Q Consensus 389 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a 460 (546)
.|.+.|-.+...+.--++.....+..-|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444433333333333333333 23455555554444332 1133444444444444444444433
No 325
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.35 E-value=1.1e+02 Score=33.50 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
|..|+..|...|+.++|++++.+..+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 778888888888888888888888763
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.22 E-value=7.1 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777777664
No 327
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.88 E-value=37 Score=31.16 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 009011 308 IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK---- 383 (546)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 383 (546)
|.+++..+++.+++...-+-.+.--+........-|-.|.|.++...+.++-..-.+.--.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4556666666666555444333221112223333344455666666555555544433222223335555554443
Q ss_pred -cCCHHHHHHHH
Q 009011 384 -AGRVKDANEIF 394 (546)
Q Consensus 384 -~g~~~~A~~~~ 394 (546)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45566665555
No 328
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=77.54 E-value=61 Score=30.14 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=36.5
Q ss_pred HhcCCHHHHHHHHH-HHHHCCCCCCH----HHHHHHHHHHHhcCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009011 277 CKTRKVDDAQKAMK-EMFQQGFSPDV----VSYTCFIEHYCREKDFR-KVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350 (546)
Q Consensus 277 ~~~g~~~~a~~~~~-~m~~~g~~~~~----~~~~~li~~~~~~g~~~-~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 350 (546)
.+...+++.....+ +|.+.++ |+. ..|..+|++---+.+-+ -|.+.++. ..+|.-++.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCC
Confidence 33444555544444 4555444 343 35666666543332211 12233333 236788888888888
Q ss_pred CHHHHH
Q 009011 351 QINEAL 356 (546)
Q Consensus 351 ~~~~a~ 356 (546)
+.+..+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877654
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.59 E-value=22 Score=35.13 Aligned_cols=147 Identities=6% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFI 308 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 308 (546)
.|...-...-+.-....|++..|-+-+.......+.++.........+...|+++.+...+...... +.....+...++
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~ 364 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRL 364 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 309 EHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 377 (546)
....+.|++++|..+-+-|....++ +........-..-..|-++++.-.++++...+.+.+....|.+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
No 330
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.12 E-value=1.1e+02 Score=32.48 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
-..-+..+.+.+++.+.++.+.. .+.+...-.....+....|+.++|.+....+-......+..++.++..+.+.
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence 33334445555556555542211 1334444455555666666665555444443222223344555555555555
Q ss_pred CCH
Q 009011 280 RKV 282 (546)
Q Consensus 280 g~~ 282 (546)
|.+
T Consensus 177 g~l 179 (644)
T PRK11619 177 GKQ 179 (644)
T ss_pred CCC
Confidence 543
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.97 E-value=1.1e+02 Score=32.36 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=30.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKG 245 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 245 (546)
.+|-.+.+.|++++|.++..+..+. .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3466788999999999999666543 455556677777777765
No 332
>PRK09687 putative lyase; Provisional
Probab=75.94 E-value=69 Score=29.91 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV----DDAQKAMKEMFQQGFSPDVVSY 304 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~~ 304 (546)
.+|.......+.++...|..+-... +..+. ...+...-...+.++...|+. +++...+..+... .++...-
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRL-AIELC--SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHH-HHHHH--hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3444445555555555554332222 22221 123555555666666666652 4566666666333 2455544
Q ss_pred HHHHHHHHhcCCh-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 305 TCFIEHYCREKDF-----RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 305 ~~li~~~~~~g~~-----~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
...+.++...+.. ..+...+..... .++..+-...+.++++.++ +.+...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4555555544321 223333333222 2355566677777777776 4555666665553 45556666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 380 ILSKAG-RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 380 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
++++.+ .-..+...+..+.. .++..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 676653 24456666666664 3566666777778888777 45665555555543 2 234566777777775
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 459 VLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
+|...+..+.+.. +|..+-...+.++
T Consensus 252 ~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 5667777666532 3555555544444
No 333
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.73 E-value=82 Score=31.32 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=39.1
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQI--FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV--SYTCFIEHYCREKD 316 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~ 316 (546)
..+..|+.+.+..+++. +..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 8 ~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 8 DAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556777766555542 33333221 334455556667765 334445556554432 11233455566777
Q ss_pred hhHHHHHHH
Q 009011 317 FRKVDDTLK 325 (546)
Q Consensus 317 ~~~a~~l~~ 325 (546)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 766555443
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.48 E-value=8.2 Score=38.91 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
..|-|...|...-.+.-.|+...|...+...........-+....|...+.+.|....|..++.+...-....+.++..+
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 44444444444444444566666666665554322111222334444555555555666666655444333444556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.++|.-..+++.|++.|++..+.
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhc
Confidence 66666666666666666666554
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.44 E-value=5.5 Score=24.90 Aligned_cols=25 Identities=48% Similarity=0.680 Sum_probs=16.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 482 LVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566666777777777777666544
No 336
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.25 E-value=1.2e+02 Score=32.22 Aligned_cols=181 Identities=14% Similarity=0.199 Sum_probs=90.4
Q ss_pred HHHHHHHhh-hCCCCCCH--HHHHHHHHHHH-ccCCHHHHHHHHHHhhcCCC-CC-----HHHHHHHHHHHHhcCCHHHH
Q 009011 216 AVEAFRGMK-KYGVEKDT--RALSVLMDTLV-KGNSVEHAYKVFLEFKDCIP-LS-----SQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 216 A~~~~~~m~-~~~~~~~~--~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~a 285 (546)
|+..++-+. +..+.|.. .++-.+...+. ...+++.|+..+.+...... .+ -.....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455555555 33333332 33444445444 56778888877766533111 11 112345566666666655 7
Q ss_pred HHHHHHHHHCC----CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHHHH
Q 009011 286 QKAMKEMFQQG----FSPDVVSYTCF-IEHYCREKDFRKVDDTLKEMQEKG---CKPSVITYTIVMHALG--KAKQINEA 355 (546)
Q Consensus 286 ~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~~a 355 (546)
...+++..+.- ..+-...+..+ +..+...++...|.+.++.+...- ..|-...+..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 77777765531 11122223333 222323367888888777766432 2333444444444443 33445556
Q ss_pred HHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 009011 356 LKVYEKMKSDD---------CLPDTSFYSSLIFILS--KAGRVKDANEIFEDM 397 (546)
Q Consensus 356 ~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 397 (546)
.+.+..+.... ..|-..+|..+++.++ ..|+++.+...++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665552211 1234556666655543 456665655555444
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.96 E-value=44 Score=30.67 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG--- 347 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~--- 347 (546)
.=|+++++.+++.++....-+.-+.--+........-|-.|.+.|++..+.++-.......-.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34888899999998887766655442223344555566778899999998888888776533333445777776654
Q ss_pred --hcCCHHHHHHHH
Q 009011 348 --KAKQINEALKVY 359 (546)
Q Consensus 348 --~~g~~~~a~~~~ 359 (546)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 468888888877
No 338
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.75 E-value=18 Score=28.55 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 218 EAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
+-++.+....+.|++......+.+|-+.+++..|.++|+.++...++...+|-.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3334444445566666666666666666666666666666655444444444443
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.97 E-value=75 Score=29.44 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 305 TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 305 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
+.....|...|.+.+|.++.+....-+ +.+...+-.++..+...|+--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455556666666666665555542 334555556666666666655555444444
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.74 E-value=37 Score=25.72 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=27.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
..+...|++++|..+.+.+ ..||...|-++.. .+.|..+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445556666665555544 2455555555443 34455555555555555544
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.74 E-value=8.7 Score=24.02 Aligned_cols=24 Identities=13% Similarity=0.411 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
|..+|.+.|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
No 342
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.55 E-value=11 Score=21.35 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+..+...+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.51 E-value=11 Score=21.43 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766654
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.04 E-value=75 Score=28.99 Aligned_cols=191 Identities=10% Similarity=0.126 Sum_probs=112.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhc
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSP---DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK---GC--KPSVITYTIVMHALGKA 349 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~--~p~~~~~~~li~~~~~~ 349 (546)
+..+.++|+.-|.+..+..... ...+...+|..+.+.|++++..+.+.+|... .+ .-+..+.+.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457888888888887753222 2334556788888889999888888887642 11 12345667777777767
Q ss_pred CCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CC-------HHHHHHHH
Q 009011 350 KQINEALKVYEKMKS----DDC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV----PN-------VLTYNTMI 413 (546)
Q Consensus 350 g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~-------~~~~~~li 413 (546)
.+.+.....|+.-.+ ..- ..=-.+-..+...|...|.+.+...+++++.+.--. -| ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 777766666654322 110 000112345667777778888888888877653111 11 23455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHh
Q 009011 414 SSACARSEEENALKLLQKMEEDL-CKPDCETYAPLLKMC-----CRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~m~~ 469 (546)
..|....+-.+...++++..... --|.+.... +|+-| .+.|.+++|..-|-++.+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 77777777677777777665432 234444333 33333 456777777654444443
No 345
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.75 E-value=86 Score=29.55 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKK----QGVVPNVLTYNTMISS-ACARSEEENALKLLQKMEEDLCKPDC---- 441 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~---- 441 (546)
...+......||+.|+.+.|.+.+....+ .|.+.|+..+..-+.. |..+.-..+-++-.+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555666778888888888777765543 3555555544432222 22333344455555556666655443
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
.+|..+- |....++.+|..+|-+...
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3444443 3445567777777766554
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.48 E-value=61 Score=27.70 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
+++|.+.|+...+. .|+...|+.-+.... +|-+++.++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 34444444444443 667777776666552 3555666665554
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.42 E-value=87 Score=29.06 Aligned_cols=71 Identities=14% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS-----KGIVPYHSTY 514 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 514 (546)
++......|..+|.+.+|.++.+.....+.- +...|-.++..+...|+--.|.+-++.+.+ .|+..+..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445556778888888888888888776543 677778888888888887666666666543 2666555544
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.17 E-value=57 Score=26.80 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 475 DAGTYASLVRGLIESGK-LELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 524 (546)
+...|.+++.+..+..- ---+..+|+-|.+.+.+++...|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455555555544333 223455556665555666666666666666544
No 349
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.16 E-value=66 Score=28.01 Aligned_cols=90 Identities=18% Similarity=0.064 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 344 HALGKAKQINEALKVYEKMKSDDCLPD-----TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA 418 (546)
Q Consensus 344 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 418 (546)
.-+.+.|++++|..-|....+.- ++. ...|..-..++.+.+.++.|.+-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 44677888888888888887762 322 223444445667777888887777777764321 12222233446777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 009011 419 RSEEENALKLLQKMEED 435 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~ 435 (546)
...+++|++-|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77888888888888775
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.72 E-value=89 Score=28.85 Aligned_cols=199 Identities=16% Similarity=0.216 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHH
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSY-------TCFIEHYCREKDFRKVDDTLKEMQ----EKGCKPSVITY 339 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-------~~li~~~~~~g~~~~a~~l~~~m~----~~g~~p~~~~~ 339 (546)
.+.+-..+.+++++|...+.++...|+..|..+. ..+...|...|+....-+...... +-.-+-.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 4566677889999999999999999988776544 345667788888776665554332 22111123344
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHH
Q 009011 340 TIVMHALGK-AKQINEALKVYEKMKSDDCLPDTS-----FYSSLIFILSKAGRVKDANEIFEDM----KKQGVVPNVLTY 409 (546)
Q Consensus 340 ~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~ 409 (546)
..++..+.. ...++..+.+.....+........ .-.-++..+.+.|.+.+|..+...+ .+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 445554432 334555555555554432221221 2234566777777777777665543 333334444433
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 009011 410 NTM-ISSACARSEEENALKLLQKMEED----LCKPDCETYAPLLKM--CCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 410 ~~l-i~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~ 469 (546)
..+ -.+|-...+..++..-+...... -++|....---++.+ .|...++..|..+|-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 322 23444445555555444443321 234443333333333 2334455566666655554
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.70 E-value=7.1 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 009011 271 ILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~ 289 (546)
.+...+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3344444444444444443
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.30 E-value=14 Score=20.95 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555566666666666666665543
No 353
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.15 E-value=13 Score=34.87 Aligned_cols=53 Identities=8% Similarity=-0.104 Sum_probs=29.5
Q ss_pred HHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 169 DVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 169 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
.-|-++|++++|++-|..... . .+.+..++..-..+|.+..++..|..=-+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia-~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA-V-YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc-c-CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 446666666666666655544 2 3345555655566666666665554444333
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.69 E-value=1.7e+02 Score=31.75 Aligned_cols=225 Identities=12% Similarity=0.085 Sum_probs=121.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----H---HHHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSPD----V---VSYTCFIE-HYCREKDFRKVDDTLKEMQEK----GCKPSVITYTIVMH 344 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~~----~---~~~~~li~-~~~~~g~~~~a~~l~~~m~~~----g~~p~~~~~~~li~ 344 (546)
...+++++|..++.++...-..|+ . ..|+.+-. .....|+++++.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 356789999999988765422222 1 13444332 234568899999988877654 23334556667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HH--HHHHHhcCCHH--HHHHHHHHHHHCC--CC----CCHHHHHH
Q 009011 345 ALGKAKQINEALKVYEKMKSDDCLPDTSFYS---SL--IFILSKAGRVK--DANEIFEDMKKQG--VV----PNVLTYNT 411 (546)
Q Consensus 345 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~~~--~A~~~~~~~~~~~--~~----p~~~~~~~ 411 (546)
+..-.|++++|..+..+..+..-.-+...+. .+ ...+...|+.. +.+..|....... -+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7788899999998887765542223333332 22 22344556322 2233333332210 01 12234444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q 009011 412 MISSACAR-SEEENALKLLQKMEEDLCKPDCET--YAPLLKMCCRKKRMKVLNFLLTHMFKND----VSMDAGTYASLVR 484 (546)
Q Consensus 412 li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~ 484 (546)
+..++.+. +...++..-++--......|-... +..|.......|+.++|...++++.... ..++..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 122222222222222221222222 2366777888999999999999887732 3334444444444
Q ss_pred HH--HHcCChHHHHHHHHH
Q 009011 485 GL--IESGKLELACSFFEE 501 (546)
Q Consensus 485 ~~--~~~g~~~~A~~~~~~ 501 (546)
.. ...|+.+.|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 33 356777777776655
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.51 E-value=21 Score=22.78 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=23.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
.+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666777777777777777777777766654
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.10 E-value=61 Score=27.71 Aligned_cols=67 Identities=7% Similarity=0.021 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhc
Q 009011 387 VKDANEIFEDMKKQGVVPNVLT---YNTMISSACARSEEENALKLLQKMEED-----LCKPDC-ETYAPLLKMCCRK 454 (546)
Q Consensus 387 ~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~-~~~~~ll~~~~~~ 454 (546)
++.|.+.++.-...+ +.|... |...+.-+.+.....++.+++++.+.. .+.|+. .++..+..++...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 455666665543332 123332 333344444444444444444443321 134553 5666666666543
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.96 E-value=36 Score=26.96 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 378 (546)
+..+-++.+...++.|+.......+.+|.+.+++..|.++|+-++.. +.+.-..|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34555666666777888888888888888888888888888877653 223333454444
No 358
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.22 E-value=84 Score=27.26 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=53.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009011 414 SSACARSEEENALKLLQKMEEDLCKPDCETYA-----PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 488 (546)
..+...|++++|...++..... |....+. .|.+.....|.+|+|..+++...+.++. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4456677777777777766542 2222332 2334556677777777777766554332 2233334566777
Q ss_pred cCChHHHHHHHHHHHHCC
Q 009011 489 SGKLELACSFFEEMISKG 506 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g 506 (546)
.|+-++|..-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 788888888888777765
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=1.1e+02 Score=28.38 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=113.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhhc-CCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQI-------FNILIHGWCKTRKVDDAQKAMKEMFQQ----GFSPDVVSYT 305 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~ 305 (546)
+.+-..+.+++++|...+.++.. |...+..+ ...+.+.|...|+...-.+......+. .-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556788999999999988876 56556544 455778888888877766655443322 1111233444
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHHH
Q 009011 306 CFIEHYCRE-KDFRKVDDTLKEMQEKGCKPSVIT-----YTIVMHALGKAKQINEALKVYEK----MKSDDCLPDTSFYS 375 (546)
Q Consensus 306 ~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~~-----~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~ 375 (546)
+++.-+-.. ..++..+.+.....+......... =..++..+.+.|.+.+|+.+... +.+.+-.++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 555544433 446677777766665433322222 12467788899999999877654 44444444432222
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 009011 376 S-LIFILSKAGRVKDANEIFEDMKKQ----GVVPNVLTYNTMISS--ACARSEEENALKLLQKMEE 434 (546)
Q Consensus 376 ~-li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 434 (546)
. =-..|-...++.++..-+...... -++|-...---++++ .|...++..|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 1 123455555666665555544421 123333333334443 2455677788887777655
No 360
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.91 E-value=7.7 Score=21.81 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=7.4
Q ss_pred HHHhcCChHHHHHHHHHh
Q 009011 206 RLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m 223 (546)
++.+.|++++|.+.|+++
T Consensus 9 ~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 333344444444444443
No 361
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.88 E-value=81 Score=25.90 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009011 442 ETYAPLLKMCCRKKR-MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 488 (546)
..|..++.+.++... --.+..+|.-+.+.+.+++..-|..++.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 345555555544333 23344445555544455555555555555444
No 362
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.58 E-value=20 Score=24.37 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 176 KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 176 ~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.++.+.++++.+... .-+..-.-.+|.+|.+.|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555555555442 22333344568888888888888888877753
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.30 E-value=1.5e+02 Score=28.91 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---------CCCCCH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQG--FSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK---------GCKPSV 336 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---------g~~p~~ 336 (546)
.+.-+.+.|..+|+++.|.+.+.+..+-- .+-.+..|-.+|..-.-.|+|..+..+..+..+. .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 35666677777777777777777744321 1113445555566666667776666666655543 122233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CC-CHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHHCCCCC
Q 009011 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDC------LP-DTSFYSSLIFILSKAGRVKDANE-----IFEDMKKQGVVP 404 (546)
Q Consensus 337 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~-~~~~~~~li~~~~~~g~~~~A~~-----~~~~~~~~~~~p 404 (546)
..+..+...+. +++..|.+.|-......+ .| |..+|. .+.+++--++-+--.. .|+...+ .
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 33434433333 356665555543322211 12 333443 2333333222221111 1222222 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHH
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKMEED-----LCKPDCETYAPLL 448 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll 448 (546)
.+..+..+..-| .+++...+++++++... -+.|.+.+.-.+|
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 334444444433 35788888888887543 2344444444443
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.11 E-value=27 Score=30.36 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDE 189 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~ 189 (546)
.+.........|+.+-....|++.+|..++..+...|+.++|.++.+++..
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666665556667777777777777777777777666666665
No 365
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.68 E-value=55 Score=32.58 Aligned_cols=211 Identities=13% Similarity=0.167 Sum_probs=107.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVS--YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVI--TYTIVMHALGK 348 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--~~~~li~~~~~ 348 (546)
+...++.|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHH
Confidence 3444566776554 44556777766532 2344556667777754 44555667655432 11234555567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHH
Q 009011 349 AKQINEALKVYEKMKSDDCLPDTS---FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTY--NTMISSACARSEEE 423 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~ 423 (546)
.|+.+.+..+++ .|...+.. .-...+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 888887666554 33211110 0122334445667664 44555556666543221 22344455677766
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCChHHHHH
Q 009011 424 NALKLLQKMEEDLCKPD---CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT---YASLVRGLIESGKLELACS 497 (546)
Q Consensus 424 ~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~ 497 (546)
-+..++ +.|..++ ..-.+.+. ..+..|+.+.+. .+.+.|..++... ....+...+..|+.+
T Consensus 150 ~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~eiv~----~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 150 GIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIAICK----MLLDSGANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred HHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHHHH----HHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 544444 4444333 22333444 344567765544 4455565554322 123444344566654
Q ss_pred HHHHHHHCCCCCCHH
Q 009011 498 FFEEMISKGIVPYHS 512 (546)
Q Consensus 498 ~~~~m~~~g~~p~~~ 512 (546)
+.+.+.+.|..++..
T Consensus 217 iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHHCCcCcchH
Confidence 455566678777754
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.19 E-value=66 Score=32.90 Aligned_cols=129 Identities=12% Similarity=-0.001 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
+.+-.++..|.....|--.+.|...-.+.-.|+...|.+.+.......+.-..+....|.....+.|....|-.++.+..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 33444555555433333333343334445567777777777766554333334445556666667777777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 329 EKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 329 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
... .....++-.+.+++.-..+++.|++.|++..+.. +-+...-+.|..
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 554 2244566677777777888888888888877654 223444444443
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.04 E-value=41 Score=29.29 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 472 VSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 472 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
..|+..+|..++.++...|+.++|.+..+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666666666666666666666665
No 368
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.36 E-value=1.9e+02 Score=29.30 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
|...+.+++..+.......-.+.+..++.. ...+...|..++++|... ..+.-..+++++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YGESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 333344444444444444444444444432 223444455555555554 233444444444443
No 369
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.91 E-value=1.5e+02 Score=27.83 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhcCCCCCCHHHHH
Q 009011 97 VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVE 131 (546)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 131 (546)
.+.+..++.....+.+.+.+.+...|..++-.-+.
T Consensus 32 ~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYg 66 (412)
T KOG2297|consen 32 RDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYG 66 (412)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHhccccccHHHHH
Confidence 46667777777777777888888777766654333
No 370
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.05 E-value=51 Score=34.16 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQKMEEDL--CKPDCETYAPLLKMCCRKKRMK------VLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
.++.+|...|++-.+..+++.....+ -+.-...|+..|+...+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887653 2233456788888888888754 3444444444 44577788888
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~ 503 (546)
+.+-..--.-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655333333334444444
No 371
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.04 E-value=1.3e+02 Score=26.89 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHhh
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS--TIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
.+.++..-+|.||--|.-...+.+|-+.|..-....+...+...++ ..|+...+.|+.++|++....+-
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3444444444444444444444444444443222110012333332 33555566666666666666653
No 372
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.69 E-value=42 Score=21.40 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=14.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 418 ARSEEENALKLLQKMEEDLCKPDCETYAPLL 448 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 448 (546)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344445555555555555444444444443
No 373
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.46 E-value=1.4e+02 Score=26.84 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=57.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHH
Q 009011 347 GKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ-G-----------VVPNVLTYNTMIS 414 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~li~ 414 (546)
.+..+..--.++.+-....+++-+.....+++ +...|++.+|+..++.-... | -.|.+.....++.
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 33333333334444444444444444444443 34556666666666544321 1 1366777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 453 (546)
.|.. +++++|.+++.++.+.|..|.. ..+.+.+.+-.
T Consensus 248 ~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 248 ACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVVKN 284 (333)
T ss_pred HHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHh
Confidence 6554 5889999999998888877653 34445555433
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.46 E-value=4.4e+02 Score=32.54 Aligned_cols=152 Identities=11% Similarity=-0.007 Sum_probs=87.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
++..+-.+.+.+.+|+..++.-..... ......|-.+...|...++.|....+...-.. +.. ...-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s-l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS-LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc-HHHHHHHHHhh
Confidence 334455567788888888887311111 12233344455588888888877776653111 111 23345556778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT-YTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~ 358 (546)
|++..|...|+.+.+.+.. ...+++-++......|.++.+....+-..... .+.... ++.=+.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8899999999988876432 35667767776667777777766555444332 112222 22223344566666666655
Q ss_pred HH
Q 009011 359 YE 360 (546)
Q Consensus 359 ~~ 360 (546)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.50 E-value=2.6e+02 Score=29.65 Aligned_cols=400 Identities=13% Similarity=0.137 Sum_probs=195.4
Q ss_pred cCChhHHHHHHHHHHhC---CCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCC----CCHHHHHHH-HHHHH
Q 009011 138 SNDLTPAFGFFTWAKTQ---TGYMHT-PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY----VSLATMSTI-MRRLV 208 (546)
Q Consensus 138 ~~~~~~a~~~f~~~~~~---~g~~~~-~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~----~~~~~~~~l-i~~~~ 208 (546)
..+.+.|......+... +++..- -.....++..+.+.+... |...+++..+.- .. .-...+.-+ +..+.
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~-~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS-ETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHH
Confidence 45777777777766422 222111 123345667777777666 888888876633 22 112222222 22233
Q ss_pred hcCChHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHhhc---C-------CCCCHHHHHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYG---VEKDTRALSVLMDTLV--KGNSVEHAYKVFLEFKD---C-------IPLSSQIFNILI 273 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~---~-------~~~~~~~~~~li 273 (546)
..+++..|++.++.+.... ..|-..++..++.+.. ..+..+++.+..+.+.. . .++...+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3479999999998885532 2444455555555544 34545556665554421 1 234556677777
Q ss_pred HHHH--hcCCHHHHHHHHHHHHH-------CC-C---C-------------------CCHHHH---------HHHHH--H
Q 009011 274 HGWC--KTRKVDDAQKAMKEMFQ-------QG-F---S-------------------PDVVSY---------TCFIE--H 310 (546)
Q Consensus 274 ~~~~--~~g~~~~a~~~~~~m~~-------~g-~---~-------------------~~~~~~---------~~li~--~ 310 (546)
+.++ ..|+++.+...++++.+ .. . . +....| ..++. .
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 6655 56776676666555432 10 0 0 111111 11222 2
Q ss_pred HHhcCChhHHHHHHHH-------HH-HcCCCCC--------HHHHHHHHH---------HHHhcCCHHHHHHHHHHHHhC
Q 009011 311 YCREKDFRKVDDTLKE-------MQ-EKGCKPS--------VITYTIVMH---------ALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~-------m~-~~g~~p~--------~~~~~~li~---------~~~~~g~~~~a~~~~~~~~~~ 365 (546)
++..|..++|.+++++ .. .....++ ...|...+. ..+-.+++..|.+.++.+.+.
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2334444455555544 44 1111111 111222222 224478899999999988764
Q ss_pred CCC-CC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH----HHHHHhcCCHHH-
Q 009011 366 DCL-PD-------TSFYSSLIFILSKAGRVKDANEIFE--------DMKKQGVVPNVLTYNTM----ISSACARSEEEN- 424 (546)
Q Consensus 366 ~~~-~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~- 424 (546)
.-. |+ ...+....-.+-..|+++.|...|. .....+...+...+..+ |.-+......++
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 211 11 2222222223445799999999997 44444444444443321 112222223333
Q ss_pred -HHHHHHHHHHC-CCCCC--HHH-HHHHHHHHHhcCCh--HHHHHHHHHHHh-C----CC-CCCHHHHHHHHHHHHHcCC
Q 009011 425 -ALKLLQKMEED-LCKPD--CET-YAPLLKMCCRKKRM--KVLNFLLTHMFK-N----DV-SMDAGTYASLVRGLIESGK 491 (546)
Q Consensus 425 -A~~~~~~m~~~-~~~p~--~~~-~~~ll~~~~~~g~~--~~a~~~~~~m~~-~----~~-~~~~~~~~~li~~~~~~g~ 491 (546)
+.++++.+... .-.|+ ..+ +..++.++...... .++...+.+..+ . +. ..-..+++.+-..+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 66777766432 11222 223 33334333322221 244444333222 1 11 111223333333344 688
Q ss_pred hHHHHHHHHHHHHCCCC-C--CHHHHH-----HHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 492 LELACSFFEEMISKGIV-P--YHSTYK-----MLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 492 ~~~A~~~~~~m~~~g~~-p--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
..+..+.........-+ | ....|. .+.+.+...|+.++|........+.
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 77766655553322111 2 333443 3344477789999999999888764
No 376
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.34 E-value=1.3e+02 Score=32.59 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK 244 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 244 (546)
.++|..+.+.|..+-|+...++-.. . .......|+.+.|++.-.++ .|..+|..|......
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~t-R------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~ 684 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERT-R------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALR 684 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcch-h------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4566777777777777665543322 1 34455678888887776553 456778888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
.|+..-|+..|+..+. |+.|--.|.-.|+.++-.++.+....+ -|..+. . ....-.|+.++-.+++
T Consensus 685 qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~iae~r---~D~~~~--~-qnalYl~dv~ervkIl 750 (1202)
T KOG0292|consen 685 QGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKIAEIR---NDATGQ--F-QNALYLGDVKERVKIL 750 (1202)
T ss_pred hcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHHHHhh---hhhHHH--H-HHHHHhccHHHHHHHH
Confidence 8888888888877664 556666677788888777766655443 122211 1 1112246666666555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 325 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
+. .|..| . .|. .-...|.-++|.++.++....
T Consensus 751 ~n---~g~~~-l-ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 751 EN---GGQLP-L-AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred Hh---cCccc-H-HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 44 23332 1 221 123467778888888887663
No 377
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.22 E-value=74 Score=33.04 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 237 VLMDTLVKGNSVEHAYKVFLEFKD---CIPLSSQIFNILIHGWCKTRKVD------DAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 237 ~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
.|+.+|...|++-.+.++++.+.. +...-...||..|+...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788888889999988888888764 23333456888888888888754 2333333322 44577788777
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 009011 308 IEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+.+....-+..-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765553333333344444443
No 378
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.84 E-value=1.5e+02 Score=26.67 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=12.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 009011 382 SKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 382 ~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
+..+++.+|.++|+++....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666554433
No 379
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.68 E-value=4.7e+02 Score=32.33 Aligned_cols=315 Identities=10% Similarity=0.024 Sum_probs=162.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
..+=-+++.+..|.-.++.-..... .......+..+...|...+++|....+...-. .+...+. -+-.....|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHhhc
Confidence 3344577888888888887311000 11223344444558888898888777666411 1222222 233456789
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF-IEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~l~~ 325 (546)
++..|...|+.+.+..|+....++-++......|.++.+.-..+-.... ..+....|+++ +.+--+.++++.......
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999999877777888888888888888888777765555443 12233333332 344467778877776655
Q ss_pred HHHHcCCCCCHHHHHHH--HHHHHh--cCCHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCHHHHHH
Q 009011 326 EMQEKGCKPSVITYTIV--MHALGK--AKQINEALKVYEKMKSDDCLP---------DTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 326 ~m~~~g~~p~~~~~~~l--i~~~~~--~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
.. +..+|... .....+ ..+.-.-.+.++.+.+.-+.| =...|..++....-. +-..
T Consensus 1543 ---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~ 1611 (2382)
T KOG0890|consen 1543 ---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELEN 1611 (2382)
T ss_pred ---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHH
Confidence 22 11122222 222211 122211222333222211111 112334443333221 1111
Q ss_pred HHHHHHHCCCCCC------HHHHHHHHH---HHHhcCCHHHHHHH-HHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 009011 393 IFEDMKKQGVVPN------VLTYNTMIS---SACARSEEENALKL-LQKMEED-LC-KPDCETYAPLLKMCCRKKRMKVL 460 (546)
Q Consensus 393 ~~~~~~~~~~~p~------~~~~~~li~---~~~~~g~~~~A~~~-~~~m~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a 460 (546)
..+... +..++ ..-|-.-+. .+.+..++--|.+- +...... +. .--..+|-...+.+-+.|.++.|
T Consensus 1612 ~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1612 SIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111 11111 112222221 22221111111110 0011111 11 11235677777777779999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 461 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
...+-...+.+ -...+--....+...|+...|+.++++-.+.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88887777765 2345555667777889999999999888765
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.58 E-value=90 Score=24.05 Aligned_cols=79 Identities=9% Similarity=0.020 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
..++|..+.+.+...+. ....+-.+-+..+.+.|++++|.. .- .....||...|-++.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~~--~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--LP--QCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--HH--TTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--hc--ccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 35666666666665542 223333333445566666666611 11 1122456555554432 45566666666666
Q ss_pred HHHHCC
Q 009011 431 KMEEDL 436 (546)
Q Consensus 431 ~m~~~~ 436 (546)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665544
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.42 E-value=43 Score=24.10 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=4.8
Q ss_pred CHHHHHHHHHHH
Q 009011 421 EEENALKLLQKM 432 (546)
Q Consensus 421 ~~~~A~~~~~~m 432 (546)
+.++|+..|...
T Consensus 21 ~~~~Al~~W~~a 32 (80)
T PF10579_consen 21 ETQQALQKWRKA 32 (80)
T ss_pred hHHHHHHHHHHH
Confidence 334444444433
No 382
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.14 E-value=88 Score=23.79 Aligned_cols=48 Identities=6% Similarity=0.142 Sum_probs=19.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
..|++++|..+.+.+ +.||...|.++.. .+.|..++...-+..|...|
T Consensus 51 NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 51 NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred ccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344444444443333 2344444433322 23444444444444444433
No 383
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.99 E-value=1.4e+02 Score=26.02 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNT-----MISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
...+..+|++++|...++..... |....+.. |.+.....|.+|+|+.+++...+.+. .......-...+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 44566777888887777766642 22233332 33456667788888888776655432 1122233345677
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 009011 453 RKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~ 471 (546)
..|+-++|..-|+...+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7788888888888777764
No 384
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.73 E-value=81 Score=23.24 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHH
Q 009011 350 KQINEALKVYEKMK 363 (546)
Q Consensus 350 g~~~~a~~~~~~~~ 363 (546)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.45 E-value=3.4e+02 Score=30.01 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=24.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCC
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCI 262 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 262 (546)
-|..|+..|...|+.++|.+++.+..++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 36788999999999999999998887644
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=1.7e+02 Score=26.48 Aligned_cols=114 Identities=12% Similarity=0.056 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRA-LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKA 288 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (546)
..+++.|+..|-+... +.|+..+ |..-+-++.+..+++.+..--....+-.|..+....-+..+......+++|..+
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3456666665555543 3555533 344455556666666666555555544444445555566666666677777777
Q ss_pred HHHHHH----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009011 289 MKEMFQ----QGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 289 ~~~m~~----~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (546)
+.+... ..+.+....+..|..+--+.-...+..++.+
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 666532 2333334445555444333333344444333
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.30 E-value=1.8e+02 Score=26.73 Aligned_cols=251 Identities=14% Similarity=0.173 Sum_probs=135.8
Q ss_pred CCChHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhh---CCC--CCCHHHHHHHHHHHHccC
Q 009011 174 SKKFCLMWELVKEMDELNNGYVS--LATMSTIMRRLVRGGRYDDAVEAFRGMKK---YGV--EKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~--~~~~~~~~~ll~~~~~~g 246 (546)
...+++|+.-|++..+..+.... ..+...+|....+.|++++..+.|.+|.. ..+ .-+..+.|.+++-.....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34566677777666654312222 23445566777777777777777777642 111 233455667777666666
Q ss_pred CHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----C-------HHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKD------CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP----D-------VVSYTCFIE 309 (546)
Q Consensus 247 ~~~~a~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~-------~~~~~~li~ 309 (546)
+.+....+++.-.+ +...--.+-..|...|...|.+....++++++......- | ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66655555543221 111112233567778888888888888888886542111 1 235666677
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHH-H---hCCCCCC--HHHHHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKG-CKPSVITYTIVMHAL-----GKAKQINEALKVYEKM-K---SDDCLPD--TSFYSSL 377 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~~-~---~~~~~~~--~~~~~~l 377 (546)
.|....+-.+...++++...-. ..|.+.. -.+|+-| .+.|++++|..-|-+. . +.|-+-. .--|-.+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 7777778777888888766432 2334433 3345544 3567777776443333 2 3342211 1224445
Q ss_pred HHHHHhcCCHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 378 IFILSKAGRVKDANEIFEDM--KKQGVVPNVLTYNTMISSACARSEEENALKLLQK 431 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~--~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 431 (546)
.+++.++|- .=|+.- .--.-.|.....+.++.+|-. ++..+-.+++..
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 555555441 001111 111123556677888888754 466665555544
No 388
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.00 E-value=1.5e+02 Score=27.94 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSS--QIFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
+.|+..+|.++|+.+.+..|... .+...|+.++....-+.+...++.+.
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566555555544333221 12334444544444444444444433
No 389
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.66 E-value=2e+02 Score=27.44 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 009011 412 MISSACARSEEENALKLLQKMEED---LCKPDCETYA--PLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
++...-+.++.++|+++++++.+. .-.|+.+.|. ...+.+...|+..++.+++++..+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344445566788888888877543 2245555553 334455567777777777777666
No 390
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.58 E-value=1.7e+02 Score=26.34 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=9.8
Q ss_pred HHcCCChHHHHHHHHHH
Q 009011 171 LGKSKKFCLMWELVKEM 187 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~~m 187 (546)
++-.+++++|-++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 34445666666666554
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.84 E-value=30 Score=18.99 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHH
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFNI 271 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~ 271 (546)
.+.+..+|+++....|.+...|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444433444444433
No 392
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=52.30 E-value=3.6e+02 Score=29.76 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKMEE-DLCKPDCETYAPLLKMCCRK 454 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~ 454 (546)
|..++..-...+...|++..|++++.++.+ .|-.++...|..++..+...
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~L 1280 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENL 1280 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 445555555555556666666666666654 23344444444444444333
No 393
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.74 E-value=2.2e+02 Score=27.17 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 389 DANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 389 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
.-+.++++..+.+. -+...+..++..+.+..+.++..+-++++...
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33445555444422 23444444555555555555555555555544
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.57 E-value=96 Score=22.86 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 285 AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 356 (546)
+.++++.+.+.|+- +......+..+--..|+.+.|.+++..+. .|.. .|...+.++...|.-..|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 45667777777643 33333333333335688888888888888 5432 5778888888877766554
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.38 E-value=1.2e+02 Score=26.14 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.+-.|.+.|.+++|.+++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC
Confidence 445667777777777777776653
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.37 E-value=82 Score=33.00 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
...++.+..+-...+...-..++..|.+.|..+.+.++.+.+-..-. ...-|..-+..+.++|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444433333444555566666666666666666655543321 12334445555566666555554444443
No 397
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.32 E-value=2.3e+02 Score=27.12 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT---RKVDDAQKAMK 290 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~ 290 (546)
+.-+.++++..+.+ +.+.......+..+.+..+.+...+.++++....+.+...|-..+...... -.++....+|.
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34455666655542 344555556666666666666666666666655555666666655554431 23444444444
Q ss_pred HH
Q 009011 291 EM 292 (546)
Q Consensus 291 ~m 292 (546)
+.
T Consensus 127 ~~ 128 (321)
T PF08424_consen 127 KC 128 (321)
T ss_pred HH
Confidence 43
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.95 E-value=19 Score=28.89 Aligned_cols=29 Identities=24% Similarity=0.594 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISS 415 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 415 (546)
|.-.+|..+|.+|.+.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444556666666666665555 35555443
No 399
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=50.90 E-value=31 Score=18.20 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|..+...+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456666777778888888888877764
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.45 E-value=33 Score=31.88 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=25.5
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 369 PDTS-FYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 369 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
||.. -|+..|..-.+.||+++|+.++++.++.|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444 4457777788888888888888888877765
No 401
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.07 E-value=28 Score=24.01 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRG 210 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~ 210 (546)
.++...++.+++.+++..-.++++..+.+..+ . +..+..+|-.-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~-~-g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQ-R-GSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TSS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHH
Confidence 45566778888888888888888888888887 3 456777777777776654
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.97 E-value=38 Score=31.53 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 438 KPDCE-TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 438 ~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
.||.. .|+..|....+.|++++|+.++++..+.|..--..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34443 355777777777777777777777777766533333
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.86 E-value=2.6e+02 Score=27.46 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 009011 344 HALGKAKQINEALKVYEKMKSDDCLPDTS--FYSSLIFILS--KAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 344 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 400 (546)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999998886 444443 4455555554 366788888888887653
No 404
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.84 E-value=2e+02 Score=26.02 Aligned_cols=101 Identities=12% Similarity=0.014 Sum_probs=56.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChH
Q 009011 381 LSKAGRVKDANEIFEDMKKQGVVPNVLT-YNTMISSACARSEEENALKLLQKMEEDLCKPDCET-YAPLLKMCCRKKRMK 458 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~ 458 (546)
|....+++.|...|.+.+.. .|+..+ |+.-+..+.+..+++.+..--.+.++. .||..- --.+-.+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777766665543 466643 344555666677777776665555553 455432 223344455666777
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHH
Q 009011 459 VLNFLLTHMFK----NDVSMDAGTYASLVRG 485 (546)
Q Consensus 459 ~a~~~~~~m~~----~~~~~~~~~~~~li~~ 485 (546)
+|...+.+... ..+.+-......|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77777776643 3333334444444433
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.76 E-value=2.1e+02 Score=26.33 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 263 PLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
..++.....+...|.+.|++.+|+..|
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 346667777777788888777776554
No 406
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.34 E-value=58 Score=23.43 Aligned_cols=46 Identities=7% Similarity=-0.127 Sum_probs=22.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcChhhHHHHH
Q 009011 488 ESGKLELACSFFEEMISKGIVPY--HSTYKMLEEKLEKKRLGNAKERI 533 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 533 (546)
...+.++|+..|....++-..+. ..++..++.+++.-|+++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554422222 12444555555555555554443
No 407
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.98 E-value=80 Score=24.44 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555566666666666666655554
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.83 E-value=44 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555543
No 409
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.56 E-value=4.4e+02 Score=29.93 Aligned_cols=187 Identities=9% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK 281 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (546)
.+..+|...|...+|++.|.+... |+..+...........-+...+......-.+.. -...|...++.+-+.+-
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S-g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t-----~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS-GFGEGNALRKLVYFLLPKRFSVADGKTPSEELT-----ALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh-ccccHHHHHHHHHHhcCCCCchhcCCCCCchHH-----HHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-----
Q 009011 282 VDDAQKAMKEMFQQ---GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN----- 353 (546)
Q Consensus 282 ~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~----- 353 (546)
.+++.++-...++. ..+--..+++.+.+.....|.+-+|.+.+-.-.. ...-......++..++..|.++
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhhC
Q ss_pred -------HHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 354 -------EALK-VYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 354 -------~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
+..+ +++..-+.........|+.|-..+...+++.+|-.+.-+
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 410
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.44 E-value=1.1e+02 Score=25.24 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009011 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 325 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 385 (546)
..+.+.|.+++.. -..++..+...++.-.|.++|+++.+.+...+..|...-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444445444332 23344555555444555555555555543333333333334444333
No 411
>PRK10941 hypothetical protein; Provisional
Probab=48.25 E-value=1.4e+02 Score=27.59 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=42.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+-.+|.+.++++.|..+.+.+..-.|.++.-+---.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345556777777777777777777666667766666666777777777777777777655
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.90 E-value=1.4e+02 Score=25.61 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=21.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 413 ISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 453 (546)
+..|.+.|.+++|.+++++... .|+......-+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 3456677777777777777665 2344333444433333
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.66 E-value=1e+02 Score=25.44 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=30.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCh
Q 009011 466 HMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526 (546)
Q Consensus 466 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 526 (546)
.+.+.|.+++. --..++..+...++.-.|.++++++.+.+...+..|....++.+...|.
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33344444332 2233445555555555666666666665555555555555555555443
No 414
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.58 E-value=2.4e+02 Score=26.28 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCH----
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQ----QGFSPDVVSYTC-FIEHYCREKDFRKVDDTLKEMQEKGCKPSV---- 336 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---- 336 (546)
..++-.+...|++.++.+.+.+.+.+..+ .|.+.|+....+ |.-.|....-.++.++..+.|.+.|...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45577778888888888888777766544 366655543322 222333444466777777888887754332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 337 ITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 337 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
.+|..+- +....++.+|-.++.+...
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2332222 2234566777777666554
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.49 E-value=2.5e+02 Score=26.45 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCChHHH
Q 009011 426 LKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----------SGKLELA 495 (546)
Q Consensus 426 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----------~g~~~~A 495 (546)
.++++.+.+.++.|.-..|.-+.-.+.+.=.+.....+|+.+.. |..-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34555566666666666665555555566666666666666654 22224444444442 3566555
Q ss_pred HHHHHH
Q 009011 496 CSFFEE 501 (546)
Q Consensus 496 ~~~~~~ 501 (546)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 555543
No 416
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=4.2e+02 Score=29.01 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
=..|...|+++.|.+.-..-++. -...+..-...+.+.+.+..|-++|.++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~-----le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDA-----LETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34555666666665543211100 0122223344555667777777777776
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.08 E-value=1e+02 Score=28.05 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh----CC-CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKK----YG-VEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
-.+..-|.+.|++++|+++|+.+.. .| ..+...+...+..++.+.|+.+....+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455667777777777777776631 11 112233334444444455555544443
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.82 E-value=3.3e+02 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 009011 280 RKVDDAQKAMKEMFQQGFSPD 300 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~ 300 (546)
.+.+.|..++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444444444444444444433
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.79 E-value=1.3e+02 Score=22.41 Aligned_cols=24 Identities=29% Similarity=0.146 Sum_probs=16.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 009011 482 LVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
+.......|++++|...+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334455678888888888877643
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.27 E-value=27 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=18.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA 345 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 345 (546)
.|.-..|..+|+.|.+.|.+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35555666677777777766663 4455443
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.36 E-value=2.5e+02 Score=25.38 Aligned_cols=48 Identities=6% Similarity=-0.097 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHh---CCCCCCHHHHHHHHH-----HHHHcCChHHHHHHHHHHHHC
Q 009011 458 KVLNFLLTHMFK---NDVSMDAGTYASLVR-----GLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 458 ~~a~~~~~~m~~---~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~ 505 (546)
+.|...|+.+.+ ..+.|...++-.++- .|-..|+.++|+++.++..+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455666665544 224455444433332 234579999988887776543
No 422
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.01 E-value=2.5e+02 Score=25.15 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---CHHHH--HHHHHHHHccCCHHHHHHHHHHhh
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK---DTRAL--SVLMDTLVKGNSVEHAYKVFLEFK 259 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~ 259 (546)
..+...-+|.|+--|.-...+.+|.+.|..- .|+.+ |..++ ..-+......|+++.|.+....+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3344445555555555444455555554432 23333 33333 233344555666666666665543
No 423
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.91 E-value=2.5e+02 Score=26.41 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
++..+.+.+++.+..+.++.+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443 233333445555666666666666665544
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=41.57 E-value=5.1e+02 Score=28.40 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHHHhcCC-CCCCHHHHHHHHHhhcCChhHHHHHHHHHHh
Q 009011 112 DKVVEALKGCG-VSVSNSLVEQTLRRFSNDLTPAFGFFTWAKT 153 (546)
Q Consensus 112 ~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~ 153 (546)
++.-.-|...| .+++...+..+...- ..|..|+.......+
T Consensus 197 eE~~~fl~~~~~l~Ld~~~~~~L~~~t-eGW~~al~L~aLa~~ 238 (894)
T COG2909 197 EEAAAFLNDRGSLPLDAADLKALYDRT-EGWAAALQLIALALR 238 (894)
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHhhc-ccHHHHHHHHHHHcc
Confidence 44555555555 788888888877764 567777776665543
No 425
>PRK09857 putative transposase; Provisional
Probab=40.91 E-value=2.1e+02 Score=26.97 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=21.2
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
..++.++..++++.+.+..+.......++..-+.+.|.-+++.++..+|...|+.
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred hccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344443444443333322222222333334444444334444444444444443
No 426
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.85 E-value=3.7e+02 Score=26.54 Aligned_cols=33 Identities=27% Similarity=0.145 Sum_probs=14.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG 347 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~ 347 (546)
.+.+.|+-++.+|.+.|..|--..-..++-++-
T Consensus 263 SD~dAALyylARmi~~GeDp~yiARRlv~~AsE 295 (436)
T COG2256 263 SDPDAALYYLARMIEAGEDPLYIARRLVRIASE 295 (436)
T ss_pred CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 344444444444444444443333333333333
No 427
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.74 E-value=65 Score=32.05 Aligned_cols=52 Identities=17% Similarity=0.041 Sum_probs=22.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Q 009011 381 LSKAGRVKDANEIFEDMKKQGVVPNVLTYNT-MISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
+.+.+.++.|..++.++++. .|+-..|-. -..++.+.+++..|+.=+.++++
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444555555555555543 233222222 12444445555555544444444
No 428
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.46 E-value=3.3e+02 Score=25.81 Aligned_cols=233 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHH---------HHHcCCCCC--
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQ-GFSPDVVSYTCFIEHYCREK-----DFRKVDDTLKE---------MQEKGCKPS-- 335 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g-----~~~~a~~l~~~---------m~~~g~~p~-- 335 (546)
+..+++.|..+ ...+++-+... .-+.+...|..++..+.... ..+.....|+. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 336 VITYTIVMHAL-GKAKQ-----INEALKVYEKMKSDDC----LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405 (546)
Q Consensus 336 ~~~~~~li~~~-~~~g~-----~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 405 (546)
.......++.. ....- .+.|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---ST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CC
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHh---CCCCCCHHHHHH
Q 009011 406 VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC-CRKKRMKVLNFLLTHMFK---NDVSMDAGTYAS 481 (546)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~ 481 (546)
...-..++.+++...+.+...++++.....+..+....+..+.... ......+.+..++..-.+ .....+......
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~ 280 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSR 280 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHHH--HCCCCC
Q 009011 482 LVRGLIESGKLELACSFFEEMI--SKGIVP 509 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~--~~g~~p 509 (546)
++..+...-..++-.+-+++.. .....|
T Consensus 281 ~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~ 310 (324)
T PF11838_consen 281 VIKSFAGNFSTEEQLDELEEFFEDKPKPPP 310 (324)
T ss_dssp HHHCCCTT--SHHHHHHHHHHHHHHCTCCC
T ss_pred HHHHHhccCCCHHHHHHHHHHHhhCcCCCh
No 429
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.28 E-value=1.8e+02 Score=27.25 Aligned_cols=57 Identities=14% Similarity=0.396 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+...+.+|+.+... ..-|..++..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 355556666666666655555555555555556666666665442 222455555544
No 430
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.28 E-value=3.6e+02 Score=26.29 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH-HH------HccCCHHHHHHHHHHhhcCCCCC
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD-TL------VKGNSVEHAYKVFLEFKDCIPLS 265 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~-~~------~~~g~~~~a~~~~~~~~~~~~~~ 265 (546)
.|-...++-.+-..+.++|+.+.|.+++++..- ++..... .+ ...|. .++.-..+.|
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~~~~~~F~~~~~~~~~g~--------~rL~~~~~eN 99 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFERAFHPSFSPFRSNLTSGN--------CRLDYRRPEN 99 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhhcccccCc--------cccCCccccc
Confidence 566677787888888888888888877777631 0100000 00 00000 0000112234
Q ss_pred HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 009011 266 SQIFNIL---IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC-REKDFRKVDDTLKEMQE 329 (546)
Q Consensus 266 ~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~ 329 (546)
...|-++ |..+.+.|.+..|.++.+-+....+.-|....-.+|+.|+ +.++++-.+++.+....
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4444333 3445556666666666666665544444444444555444 44555555555555443
No 431
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.89 E-value=3.1e+02 Score=25.78 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS 420 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 420 (546)
.++....+.++.....+.+..+. ....-...+..+...|++..|.+++.+..+. .. +...|+++=.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hH
Confidence 34455555555555555554442 4555566777788889999999888877652 00 11112211111 12
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009011 421 EEENALKLLQKMEEDL-----CKPDCETYAPLLKMCCRKKRMKVLNFLLTH 466 (546)
Q Consensus 421 ~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 466 (546)
++++.....+++.+.. ..-|+..|..++.+|.-.|+...+.+-+..
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333333332221 145777888888888888877665544443
No 432
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.72 E-value=1.1e+02 Score=20.08 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 481 SLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
.+.-++.+.|++++|.+..+.+.+. .|+..-...|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 3455667777777777777777743 466554444433
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=3.2e+02 Score=25.49 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 372 SFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
.++..+...|++.++.+.+.+...
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 334444444555555444444443
No 434
>PRK14700 recombination factor protein RarA; Provisional
Probab=39.23 E-value=3.3e+02 Score=25.59 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
.|.+.|+-++.+|.+.|-.|....-..++.++-.-|
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455556666666666655555544444444444444
No 435
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=39.03 E-value=3.9e+02 Score=26.35 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=51.2
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 339 YTIVMHALGK---AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGR-----VKDANEIFEDMKKQGVVPNVLTYN 410 (546)
Q Consensus 339 ~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~ 410 (546)
+-.+++++-| ..+.+.|+-++.+|.+.|..|....-..++.++-..|. ..-|...++.....|.+-......
T Consensus 249 hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LA 328 (436)
T COG2256 249 HYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALA 328 (436)
T ss_pred HHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3345566544 45788888888888888866666666666666666664 234555556666666543333333
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQ 430 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~ 430 (546)
..+-.++..-+-..+..-++
T Consensus 329 qavvyLA~aPKSNavY~A~~ 348 (436)
T COG2256 329 QAVVYLALAPKSNAVYTAIN 348 (436)
T ss_pred HHHHHHHhCCccHHHHHHHH
Confidence 33333333334333333333
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.62 E-value=3.3e+02 Score=25.34 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AK 350 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g 350 (546)
.+++..+...+......+ +......+...|.. ..+..+|.++|..+-+.|..+ ....+...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCccc
Confidence 445556666665555432 12222223333322 233455555555554444322 22233333333 22
Q ss_pred CHHHHHHHHHHHHhCC
Q 009011 351 QINEALKVYEKMKSDD 366 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~ 366 (546)
+..+|..+|.+..+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5555555555555555
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.41 E-value=4e+02 Score=26.23 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVV--SYTCFIEHYC--REKDFRKVDDTLKEMQE 329 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~a~~l~~~m~~ 329 (546)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ...++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33556666666666666654 333322 2333333333 23445555555555443
No 438
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.48 E-value=3e+02 Score=27.11 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 270 NILIHGWCKTRKVDDAQKAMKEMFQQ--GFSPDV-VSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
--|++...-.|+.....+.++.|... |-.|.. +| ..+--+|...|++.+|.+.|-...
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778877777777777654 333332 23 234456667778888887776654
No 439
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.25 E-value=4.2e+02 Score=26.13 Aligned_cols=158 Identities=12% Similarity=0.098 Sum_probs=78.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCH
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDC---IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ---------GFSPDV 301 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~~~~ 301 (546)
.+.-+.+-|...|+++.|.+.|.+.++- ....+..|-.+|..-...|+|.....+..+.... .+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4555666677777777777777665541 2222334556666666777777666666665543 112222
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhCCCCCC
Q 009011 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKG------CKPSVITYTIVMHALGKAKQINEALKV-----YEKMKSDDCLPD 370 (546)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~a~~~-----~~~~~~~~~~~~ 370 (546)
..+..+..... +++..|.+.|-.....- +.|...+.-..+.+++--++-+.-..+ |+...+ ..
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l~ 305 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----LE 305 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----cC
Confidence 33333333222 35555555443332111 223333333334444433333322222 222222 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
+.....+...|. +++...+++++++..
T Consensus 306 Pqlr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 306 PQLREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred hHHHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 444454444443 678888888887764
No 440
>PRK09857 putative transposase; Provisional
Probab=36.36 E-value=3.7e+02 Score=25.28 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
.++.-..+.++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444334455555555555555443 2222223334445555555555555666666655554
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.34 E-value=3.9e+02 Score=25.48 Aligned_cols=133 Identities=13% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH
Q 009011 228 VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL--SSQIFNILIHGWCKTRKVDDAQKAMKEMFQ----QGFSPDV 301 (546)
Q Consensus 228 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~ 301 (546)
+..|...++.+..+ ....+++..+..+...++... -...+-.....||+.|+-+.|++.+.+..+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 45555555555432 122233333333333332221 234466677889999999999888776544 3777777
Q ss_pred HHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 302 VSYTCFIEHYC-REKDFRKVDDTLKEMQEKGCKPSV----ITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 302 ~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+-+..-+..+. ...-..+-++..+.+.+.|...+. .+|..+- |....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 66655443332 222244455555556666654332 2333322 3345678888888776654
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.76 E-value=1.9e+02 Score=24.55 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=34.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 009011 432 MEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLE 493 (546)
Q Consensus 432 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 493 (546)
+.+.|++.+..-. .++..+...++.-.|.++++.+.+.+..++..|..--+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3455665554332 334444444555667777777777666666655555556666666544
No 443
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.73 E-value=2.1e+02 Score=22.17 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=6.5
Q ss_pred hcCCHHHHHHHHHHHH
Q 009011 278 KTRKVDDAQKAMKEMF 293 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~ 293 (546)
+.|.-+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3444444444444443
No 444
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.62 E-value=1.4e+02 Score=23.13 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhC
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELN 191 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~ 191 (546)
.+++.+.+|...++|+++++.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56777777777777777777777643
No 445
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.27 E-value=99 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=22.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 448 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
+..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 333444444445556666665555544554444444444444443
No 446
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.23 E-value=2.1e+02 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
|..++..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555554444
No 447
>PRK14700 recombination factor protein RarA; Provisional
Probab=35.14 E-value=3.9e+02 Score=25.17 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=39.4
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCC
Q 009011 304 YTCFIEHYCR---EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ-----INEALKVYEKMKSDDCL 368 (546)
Q Consensus 304 ~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~ 368 (546)
+..+|+++.| ..|.+.|+-++..|.+.|..|.-..-..++.++-..|. ...|...++.....|.+
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 3344555544 46778888888888888877766666666666655553 22344444444444543
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.87 E-value=2.3e+02 Score=25.81 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=6.5
Q ss_pred HHHHHHcCChHHHHHH
Q 009011 483 VRGLIESGKLELACSF 498 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~ 498 (546)
..++.+.|+.++.+.+
T Consensus 225 ~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 225 LECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHhCCHHHHHHH
Confidence 3333344444444333
No 449
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.31 E-value=1.9e+02 Score=22.23 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=6.8
Q ss_pred HHHhcCChhHHHHHHHH
Q 009011 310 HYCREKDFRKVDDTLKE 326 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~ 326 (546)
.|...|+.++|...+.+
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 33344444444444433
No 450
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.30 E-value=1.8e+02 Score=22.30 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 009011 378 IFILSKAGRVKDANEIFED 396 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~ 396 (546)
+..|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555444444
No 451
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.26 E-value=2.4e+02 Score=23.18 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 432 MEEDLCKPDCETYAPLLKMCCRK-KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 432 m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
+.+.|.+++..= ..++..+... +..-.|.++++.+.+.++..+..|..--+..+...|-.
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344455544332 2233333332 34555666666666655554544444444444444443
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.24 E-value=2.4e+02 Score=22.49 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009011 179 LMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRG 222 (546)
Q Consensus 179 ~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (546)
.+.++|..|..++-+......|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666553344555565666666666666666666654
No 453
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.13 E-value=5.2e+02 Score=26.26 Aligned_cols=107 Identities=16% Similarity=0.056 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCC-----
Q 009011 416 ACARSEEENALKLLQKME---EDLCKPDC-----ETYAPLLKMCCRKKRMKVLNFLLTHMFK-------NDVSMD----- 475 (546)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~---~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~-------~~~~~~----- 475 (546)
+..+|++.+|.+++-..- +.|...++ ..+|.+...+.+.|.+..+..+|.+..+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344577777777665431 11211111 1123343344455555555555555542 343322
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 476 ------AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524 (546)
Q Consensus 476 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 524 (546)
..+||. .-.|...|++-.|.+.|.+.... +..++..|-.+..+|...
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 234444 33466789999999999988765 556888999998888653
No 454
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=34.13 E-value=2.4e+02 Score=25.72 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
++-...+-++.+.++.+.+..+.+-+.+.
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33333444555668888888888887765
No 455
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.93 E-value=3.8e+02 Score=24.68 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDE 189 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~ 189 (546)
.+.++..+.+.+....|+++.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 45677777777777777777766654
No 456
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.85 E-value=6.3e+02 Score=27.23 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 387 VKDANEIFEDMK-KQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 387 ~~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
.++....+.... +.|+..+......++... .|+...++.+++++...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 345555555443 457777777776666543 58899999999887654
No 457
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.54 E-value=6.5e+02 Score=27.23 Aligned_cols=131 Identities=13% Similarity=0.069 Sum_probs=76.4
Q ss_pred CCCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 009011 154 QTGYMH---TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK 230 (546)
Q Consensus 154 ~~g~~~---~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (546)
..|..+ ...++...|+.|.-.|++++|-.+.-.|.... ..-|..-+..+...++..+. +.-+.......
T Consensus 382 ~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~-----~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL 453 (846)
T KOG2066|consen 382 SIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN-----AAEWELWVFKFAELDQLTDI---APYLPTGPPRL 453 (846)
T ss_pred ccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch-----HHHHHHHHHHhccccccchh---hccCCCCCccc
Confidence 345555 45678889999999999999999988887622 55565557777666665433 22333322234
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhc-----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKD-----------------CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
+...|..++..+.. .+...-.++..+... ....+...-..|+..|...++++.|..++-...
T Consensus 454 ~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 454 KPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred CchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 56677777776665 333322222222110 011122233446667777777777776665554
No 458
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.39 E-value=86 Score=24.64 Aligned_cols=48 Identities=21% Similarity=0.091 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChh
Q 009011 480 ASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345566666666777888888888877777777766677777666643
No 459
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.63 E-value=2.1e+02 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=10.6
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~ 328 (546)
.....|++++|.+.+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3445566666666655544
No 460
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.04 E-value=4.2e+02 Score=24.61 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK----TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----EK 315 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g 315 (546)
..++...+...+....... +......+...|.. ..+..+|.+++....+.|.. .....|-..|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 4566777777776665421 22334444444443 34567788888866666432 223334444443 33
Q ss_pred ChhHHHHHHHHHHHcCCCC
Q 009011 316 DFRKVDDTLKEMQEKGCKP 334 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p 334 (546)
+..+|..+++...+.|..+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred CHHHHHHHHHHHHHcCChh
Confidence 6777888888777777554
No 461
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=32.01 E-value=2.1e+02 Score=21.17 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.|.+......+...+...|++++|++.+-++.+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445555555555555555555555555443
No 462
>PRK10941 hypothetical protein; Provisional
Probab=31.27 E-value=4.3e+02 Score=24.50 Aligned_cols=75 Identities=11% Similarity=-0.025 Sum_probs=39.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 009011 446 PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG-IVPYHSTYKMLEEKL 521 (546)
Q Consensus 446 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~ 521 (546)
.+-.+|.+.++++.|..+.+.+....+. +..-+.--.-.|.+.|.+..|..=++..++.. -.|+.......+..+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3444555666666666666666654433 44444444445666666666666666665442 223333333334433
No 463
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=31.21 E-value=1.7e+02 Score=20.61 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
+.+.|..++..++..-..++..||++.+.+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 456677777777766666777787776665543
No 464
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.88 E-value=1.8e+02 Score=20.95 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=12.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDE 189 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~ 189 (546)
++++.+.+|.-.++|+++++.|.+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleK 59 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEK 59 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHH
Confidence 444455555555555555555444
No 465
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.15 E-value=3.7e+02 Score=23.41 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
.-++.........|++++|.+-++++.+
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445555666778887777776643
No 466
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.04 E-value=41 Score=31.86 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=41.7
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKA 288 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (546)
..|.+++|++.|...++.+ ++....|.--..++.+.+....|.+=+.......+.+..-|-.--.+..-.|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666666655443 333444444444444555555444444333332222222232222333334566666666
Q ss_pred HHHHHHCCCCC
Q 009011 289 MKEMFQQGFSP 299 (546)
Q Consensus 289 ~~~m~~~g~~~ 299 (546)
+....+.+..+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66655554433
No 467
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.01 E-value=4.7e+02 Score=26.47 Aligned_cols=234 Identities=8% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCCCCHHHHHH--HHHH-----HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 217 VEAFRGMKKYGVEKDTRALSV--LMDT-----LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~--ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
.++++.+.+.|..++...... .+.. .+..|..+-+.-+++.-..-...+....+.|..+.. ....-.+++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv 124 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIV 124 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHH
Q ss_pred HHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 290 KEMFQQGFSPDVVSYT--CFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY--TIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 290 ~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
+.+.+.|..++..... +.+..++..|. .-.++++.+.+.|..++.... ...+...+..| -.++.+.+.+.
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ 198 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDN 198 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHc
Q ss_pred CCCCCHHHH--------HHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 366 DCLPDTSFY--------SSLIFILSKAGR--VKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 366 ~~~~~~~~~--------~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
|..++.... ...+...+..|. .+-+.-+++.-..-... |..-.+.+..+..... .++++.+.+.
T Consensus 199 ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~-d~~g~TpL~~A~~~~~-----~~iv~~Ll~~ 272 (480)
T PHA03100 199 GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIK-DVYGFTPLHYAVYNNN-----PEFVKYLLDL 272 (480)
T ss_pred CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCC-----HHHHHHHHHc
Q ss_pred CCCCCHHHHH--HHHHHHHhcCChHHHHHHHH
Q 009011 436 LCKPDCETYA--PLLKMCCRKKRMKVLNFLLT 465 (546)
Q Consensus 436 ~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~ 465 (546)
|..++..... .-+......+..+.+..+++
T Consensus 273 gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 273 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 468
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.98 E-value=5.3e+02 Score=25.15 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
-+.+.-.+-..+...|+.+.|.+++++..
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556666667777777777777766643
No 469
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.42 E-value=97 Score=29.49 Aligned_cols=89 Identities=17% Similarity=0.056 Sum_probs=44.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 009011 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC-ETYAPLLKMCCRKKRMKVLN 461 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~ 461 (546)
..|.++.|.+.|...++.. .+....|..-.+++.+.+++..|++-+....+. .||. .-|-.=-.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4455666666666555543 223344444455555666666666655555443 2332 12222222333455666666
Q ss_pred HHHHHHHhCCCCC
Q 009011 462 FLLTHMFKNDVSM 474 (546)
Q Consensus 462 ~~~~~m~~~~~~~ 474 (546)
..+....+.++.+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666655555443
No 470
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.24 E-value=5.8e+02 Score=25.39 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 009011 385 GRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
++.+.|...+..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4555555555555555544443
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.20 E-value=3.9e+02 Score=23.31 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=8.2
Q ss_pred HHccCCHHHHHHHHHHh
Q 009011 242 LVKGNSVEHAYKVFLEF 258 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~ 258 (546)
....|++++|.+-++++
T Consensus 39 ~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 39 LLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 34445555555544443
No 472
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.98 E-value=2.4e+02 Score=20.80 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 462 FLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 462 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
++|+-....|+..|..+|..+++.+.-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444444444444444444443334444444444443
No 473
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.76 E-value=5.5e+02 Score=24.93 Aligned_cols=55 Identities=13% Similarity=0.281 Sum_probs=33.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHHcCChHHHHHHHHHHHHCC
Q 009011 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASL----VRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
.+.++..-+...+..+.++++..-..+|.++ |.-.+..+..++|.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3455666666666666665554444555554 223345677778888888887764
No 474
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.17 E-value=2e+02 Score=19.59 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=4.5
Q ss_pred CCHHHHHHHHHHH
Q 009011 420 SEEENALKLLQKM 432 (546)
Q Consensus 420 g~~~~A~~~~~~m 432 (546)
|++-+|-++++.+
T Consensus 13 g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 13 GDFFEAHEVLEEL 25 (62)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHhHHHHHHH
Confidence 3333333333333
No 475
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.79 E-value=1.7e+02 Score=20.13 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 409 YNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
++.++..+++..-.+.++..+.++.+.|
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333344444444444333
No 476
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.71 E-value=2.6e+02 Score=20.74 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.|.|...-..+...+...|++++|.+.+-++.+.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4445555555566666666666666655555544
No 477
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.54 E-value=6.8e+02 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=17.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 313 REKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
+.++.++|..++..|...|..|....-
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r 281 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQ 281 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 446677777777777766666544433
No 478
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.68 E-value=7.3e+02 Score=25.65 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 388 KDANEIFEDM-KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 388 ~~A~~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
++..+.+... .+.|+..+......++.. ..|+...|..+++++...
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhc
Confidence 3334444333 445666666666655544 358888888888876654
No 479
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=26.58 E-value=2e+02 Score=20.22 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=27.4
Q ss_pred HHHHHHHH-hcCCChHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 98 DKISKILS-KQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 98 ~~~~~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
..+..+++ ....+-+++...|...|+.++..++++-|+.+.
T Consensus 8 ~~I~~li~~~~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 8 ELIKELISEHEISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp HHHHHHHHHS---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred HHHHHHHHHCCcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 34555555 445566789999999999999999999998763
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=26.57 E-value=6.6e+02 Score=25.16 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 444 YAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 444 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
...|+.-|...|+..+|...++++--.-+. ...++.+++.+.-+.|+-...+.++++.-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456667777777777777766655332222 45566777777777777666666666665554
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.29 E-value=1.6e+02 Score=22.84 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 444444455555666666666655555555555555555555543
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.19 E-value=3.2e+02 Score=23.18 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
.++..+...+..-.|.++++.+.+.+...+..|.-..|..+.+.|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34445545555556677777776666555555555555555555543
No 483
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=25.95 E-value=1.1e+02 Score=19.25 Aligned_cols=41 Identities=5% Similarity=0.004 Sum_probs=25.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 009011 148 FTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD 188 (546)
Q Consensus 148 f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~ 188 (546)
..|+.....++.+...+..+.+-+-..+....+.++|+++.
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34555666677777777777777777666666666666553
No 484
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.56 E-value=3.9e+02 Score=23.40 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET 443 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 443 (546)
...+.++..+...|+++.|.++|.-+.... ..|...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~ 77 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS 77 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh
Confidence 456777888888889999999888887754 445443
No 485
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.26 E-value=3.6e+02 Score=23.63 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL-ATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
.+.++..+.-.|+++.|.+.|.-+.+. ..++. ..|..-+..+.+.+.-....+.++.|
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~--~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC--PEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC--CCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 478889999999999999999988873 23333 34555555565555554444555554
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.19 E-value=3.9e+02 Score=21.95 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 385 (546)
.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4444455555544443333333333334444433
No 487
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.93 E-value=7.6e+02 Score=25.27 Aligned_cols=36 Identities=6% Similarity=-0.149 Sum_probs=20.2
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 009011 151 AKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD 188 (546)
Q Consensus 151 ~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~ 188 (546)
.....|...+......++. ...|+...|+.+++++.
T Consensus 192 i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 192 LCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH
Confidence 3344566666665544442 23467777777776654
No 488
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.76 E-value=2.9e+02 Score=20.37 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++|+-....|+..|..+|..+++.+.-.--++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444443333344444444444
No 489
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=24.48 E-value=4.1e+02 Score=22.42 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHhhcC--ChhHHHHHHHHHH
Q 009011 124 SVSNSLVEQTLRRFSN--DLTPAFGFFTWAK 152 (546)
Q Consensus 124 ~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~ 152 (546)
+-+++-+..+|..... +...|+..|+|..
T Consensus 47 k~np~~~~~~l~~~~~l~d~aeafa~fDy~l 77 (164)
T PF07840_consen 47 KNNPEKVLEILAELDKLEDDAEAFAEFDYQL 77 (164)
T ss_dssp HH-HHHHHHHHHCCTTS-SSHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHhhhcccCHHHHHHHhHHH
Confidence 3445555555555543 3445566666665
No 490
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=24.42 E-value=1.6e+02 Score=20.80 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=19.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
.|+.+.+.+++++..+.|+.|.......+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 466666777777776666666655555454444
No 491
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.08 E-value=1.1e+03 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 009011 339 YTIVMHALGKAK--QINEALKVYEKMKSD 365 (546)
Q Consensus 339 ~~~li~~~~~~g--~~~~a~~~~~~~~~~ 365 (546)
+..++.+|.+.+ ++++|+..+.++.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 445666666666 666777776666654
No 492
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.60 E-value=8.2e+02 Score=25.22 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHH-----------HHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI-----------MRRLV 208 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~l-----------i~~~~ 208 (546)
.......+......+.|+..+..+...++.... |++..+...++.+...+ ...+......+ +-...
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~-~~It~~~V~~~l~~~~~~~if~Li~al 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALG-TPVTRKQVEEALGLPPQERLRGIAAAL 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCcHHHHHHHHHHH
Q ss_pred hcCChHHHHHHHHHhhhCCCCC
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEK 230 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~ 230 (546)
..++.++|+.+++++...|..|
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HcCCHHHHHHHHHHHHHcCCCH
No 493
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.45 E-value=1e+02 Score=19.50 Aligned_cols=35 Identities=20% Similarity=0.067 Sum_probs=13.5
Q ss_pred CHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCC
Q 009011 126 SNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHT 160 (546)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~ 160 (546)
+..++..+|+.-..-.....+....+..+.||.||
T Consensus 12 S~~TVSr~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 12 SKSTVSRVLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp SHHHHHHHHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 34444444444333222222222223334566554
No 494
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=23.32 E-value=7.7e+02 Score=24.76 Aligned_cols=25 Identities=12% Similarity=0.425 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
....+|+-|...|+..+.++.++.+
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHc
Confidence 3456788888888888888877765
No 495
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.31 E-value=2.7e+02 Score=20.99 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 492 LELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 492 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
.+...+++....++. ....|+..|+.++...|....|+++.+.+.+.+
T Consensus 47 ~eq~~qmL~~W~~~~--G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKT--GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 566666666665542 245678888888888888888888887776543
No 496
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=23.15 E-value=8.4e+02 Score=25.17 Aligned_cols=44 Identities=7% Similarity=0.045 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 009011 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDE 189 (546)
Q Consensus 144 a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~ 189 (546)
....+.....+.|...+......++.. ..|++..|...++++..
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 334444444567777787777666653 45788888888877643
No 497
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=23.07 E-value=5.1e+02 Score=22.62 Aligned_cols=163 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHH------
Q 009011 329 EKGCKPSVITYTIVMHALGK----AKQINEALKVYEKMKSDDCLP----DTSFYSSLIFILSKAGRVKDANEIF------ 394 (546)
Q Consensus 329 ~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~------ 394 (546)
+.|..++...++.++..+.+ .++++-+..+=.+....+... |......-+..|-+.|++.+.-.+|
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred ---------------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 395 ---------------EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 395 ---------------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
+.+.+.--..-...|..+..+-++.-+.+++.+.+ =..+=.+++..|.+..++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~----------LGRiGiS~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL----------LGRIGISLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh----------hhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009011 460 LNFLLTHMFKNDV--------------SMDAGTYASLVRGLIESGKLELACSFFEE 501 (546)
Q Consensus 460 a~~~~~~m~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 501 (546)
+.++++.|.+..+ .+--...|.-...+.+.|..+.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 498
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.00 E-value=6.9e+02 Score=24.11 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDC----ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLV 483 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 483 (546)
++.-.+...-..--.+++..++.++++. -|+. ..|..+.+.....|.++.++.+|++++..|..|-...-..++
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q ss_pred HHHHHcCC
Q 009011 484 RGLIESGK 491 (546)
Q Consensus 484 ~~~~~~g~ 491 (546)
..+-..+.
T Consensus 183 diL~~k~~ 190 (353)
T PF15297_consen 183 DILKMKSQ 190 (353)
T ss_pred HHHHhhhh
No 499
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.87 E-value=6.9e+02 Score=25.21 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009011 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR-----------EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA 349 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-----------~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 349 (546)
++++|.++.+.+.+. ..+...+.-.-+ .+.+++-.++++.+.+.|-. | ....-|++|.+.
T Consensus 29 d~~eav~y~k~~p~~------k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~a-d--~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSIPAH------KNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGGA-D--FLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhCCcc------ccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccCC-C--ccceeeeccccc
Confidence 567777776666432 222222222222 24577888888888887622 3 344567889999
Q ss_pred CCHHHHHHHHHHHHhCC------CC---CCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 009011 350 KQINEALKVYEKMKSDD------CL---PDTSFYSSLIFILS-----KAGRVKDANEIFEDMKKQGVVP---NVLTYNTM 412 (546)
Q Consensus 350 g~~~~a~~~~~~~~~~~------~~---~~~~~~~~li~~~~-----~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l 412 (546)
+++++|..-+++-.+.| ++ ........++...- +.| -.++..+++.+...|+.- ...+||.
T Consensus 100 n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHG-tpDarlL~e~~~a~G~~a~EGG~ISYnl- 177 (480)
T TIGR01503 100 NRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHG-TPDARLLAEIILAGGFTSFEGGGISYNI- 177 (480)
T ss_pred ccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCC-CCcHHHHHHHHHHcCCCccCCCcceecc-
Confidence 99999999888776632 22 12333344444321 112 124566666666655432 2233332
Q ss_pred HHHHHhcCCHHHHHHHHH-------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCC
Q 009011 413 ISSACARSEEENALKLLQ-------KMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK--NDVS 473 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~-------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~~~~ 473 (546)
-|.+.=-.++++..|+ ...+.|+..|..+|..|...++ --...-|..+++-+.. .|++
T Consensus 178 --PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLv-PPsisiav~ilE~Lla~eqGVk 244 (480)
T TIGR01503 178 --PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLV-PPSISNAIGIIEGLLAAEQGVK 244 (480)
T ss_pred --ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCcc-ChHHHHHHHHHHHHHHHHcCCe
Confidence 1333334444444443 3345677777777765432221 2223455556665543 4443
No 500
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=22.73 E-value=1e+03 Score=25.97 Aligned_cols=150 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------------
Q 009011 351 QINEALKVYEKMKS--------DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV------------------- 403 (546)
Q Consensus 351 ~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------------- 403 (546)
+.++...++..+.+ .++..+..+...++... .|+..++..+++.+......
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Q ss_pred ----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 009011 404 ----------PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK-----RMKVLNFLLTHMF 468 (546)
Q Consensus 404 ----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~ 468 (546)
+.......++.. ++.++++.|+.++.+|.+.|..|....-..++.+....| ....|...++...
T Consensus 247 ~~~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~ 325 (725)
T PRK13341 247 RAVLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFE 325 (725)
T ss_pred hhhhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 469 KNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 469 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
..|..--.......+-.++.+-+-..+ ..+....+
T Consensus 326 ~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~ 360 (725)
T PRK13341 326 RVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALK 360 (725)
T ss_pred HhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHH
Done!