Query 009011
Match_columns 546
No_of_seqs 740 out of 3185
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 16:48:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.6E-34 1.9E-38 298.0 43.7 418 113-543 105-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-33 4.7E-38 295.1 38.5 405 125-542 82-547 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.4E-31 1.5E-35 265.6 25.0 212 285-522 9-221 (501)
4 4g26_A Pentatricopeptide repea 100.0 7.3E-31 2.5E-35 264.0 25.8 206 249-454 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-26 8.6E-31 226.6 44.7 372 139-523 13-385 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-25 4.2E-30 221.7 47.1 366 167-542 5-370 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.9E-22 6.5E-27 202.8 42.2 362 159-530 24-444 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4E-26 197.1 40.3 326 181-518 12-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 9.2E-22 3.2E-26 201.3 39.9 389 139-539 20-477 (514)
10 2gw1_A Mitochondrial precursor 99.9 3.8E-21 1.3E-25 196.7 37.7 388 113-514 27-485 (514)
11 3fp2_A TPR repeat-containing p 99.9 8.4E-20 2.9E-24 187.8 40.5 351 139-504 39-490 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 8.2E-19 2.8E-23 170.2 40.4 329 161-522 3-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-18 5.9E-23 167.9 41.5 318 197-543 3-338 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.4E-18 4.8E-23 178.7 39.0 372 162-542 26-493 (537)
15 3hym_B Cell division cycle pro 99.8 2.9E-18 1E-22 164.4 31.6 283 198-486 23-314 (330)
16 3hym_B Cell division cycle pro 99.8 3.5E-18 1.2E-22 163.8 31.3 295 156-457 17-321 (330)
17 1fch_A Peroxisomal targeting s 99.8 1.7E-18 5.8E-23 168.9 25.2 287 210-500 38-354 (368)
18 2xm6_A Protein corresponding t 99.8 8.5E-15 2.9E-19 148.6 52.9 337 139-506 57-433 (490)
19 1fch_A Peroxisomal targeting s 99.8 7E-18 2.4E-22 164.6 25.6 292 172-467 36-356 (368)
20 2xm6_A Protein corresponding t 99.8 3E-14 1E-18 144.6 49.8 352 160-541 38-433 (490)
21 4eqf_A PEX5-related protein; a 99.8 8.8E-18 3E-22 163.8 22.3 268 265-536 64-352 (365)
22 2ooe_A Cleavage stimulation fa 99.8 6.5E-15 2.2E-19 151.0 43.5 407 125-542 11-494 (530)
23 4eqf_A PEX5-related protein; a 99.8 3.6E-17 1.2E-21 159.4 23.3 233 161-398 65-308 (365)
24 3cv0_A Peroxisome targeting si 99.8 6.2E-17 2.1E-21 154.8 24.5 277 162-466 22-311 (327)
25 3cv0_A Peroxisome targeting si 99.8 2.2E-16 7.4E-21 151.0 26.6 279 198-503 22-313 (327)
26 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-18 8.1E-23 177.9 10.8 117 232-348 127-248 (1134)
27 3spa_A Mtrpol, DNA-directed RN 99.7 3.5E-18 1.2E-22 176.6 11.4 152 369-525 125-286 (1134)
28 1b89_A Protein (clathrin heavy 99.7 6.1E-17 2.1E-21 155.4 18.7 280 140-463 18-304 (449)
29 3mkr_A Coatomer subunit epsilo 99.7 3.2E-15 1.1E-19 140.2 30.0 251 205-470 7-264 (291)
30 3mkr_A Coatomer subunit epsilo 99.7 5.2E-15 1.8E-19 138.7 29.5 272 240-530 7-284 (291)
31 1b89_A Protein (clathrin heavy 99.7 1.1E-16 3.9E-21 153.5 16.3 284 172-498 14-304 (449)
32 4g1t_A Interferon-induced prot 99.7 1.2E-13 3.9E-18 139.5 36.8 369 158-542 48-461 (472)
33 1xi4_A Clathrin heavy chain; a 99.7 1.2E-12 3.9E-17 140.2 44.6 288 204-531 1056-1375(1630)
34 2ooe_A Cleavage stimulation fa 99.7 2.1E-12 7.3E-17 132.3 45.0 384 114-505 34-492 (530)
35 1xi4_A Clathrin heavy chain; a 99.7 2.1E-12 7.2E-17 138.2 43.6 353 125-536 951-1305(1630)
36 3uq3_A Heat shock protein STI1 99.6 7.6E-14 2.6E-18 128.3 25.0 225 267-505 6-236 (258)
37 3uq3_A Heat shock protein STI1 99.6 8.5E-14 2.9E-18 127.9 25.1 223 198-434 6-235 (258)
38 4g1t_A Interferon-induced prot 99.6 6.3E-13 2.1E-17 134.1 33.4 365 133-513 59-468 (472)
39 2pl2_A Hypothetical conserved 99.6 4.2E-14 1.4E-18 126.6 21.7 112 280-395 98-209 (217)
40 2pl2_A Hypothetical conserved 99.6 5.5E-14 1.9E-18 125.8 21.9 201 158-364 2-213 (217)
41 1ouv_A Conserved hypothetical 99.6 5E-12 1.7E-16 117.4 33.7 225 264-506 4-252 (273)
42 2ho1_A Type 4 fimbrial biogene 99.6 9.7E-13 3.3E-17 120.5 27.1 198 162-364 38-237 (252)
43 2ho1_A Type 4 fimbrial biogene 99.6 9.5E-13 3.3E-17 120.6 27.0 201 197-400 37-238 (252)
44 2vq2_A PILW, putative fimbrial 99.6 1.4E-12 4.8E-17 116.9 26.9 201 197-399 8-210 (225)
45 3u4t_A TPR repeat-containing p 99.6 5.2E-13 1.8E-17 123.9 24.7 236 161-400 3-250 (272)
46 2h6f_A Protein farnesyltransfe 99.6 9.1E-13 3.1E-17 127.8 27.0 197 161-362 97-302 (382)
47 2vq2_A PILW, putative fimbrial 99.6 1.5E-12 5.3E-17 116.7 26.2 200 267-469 9-210 (225)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.7E-18 128.7 19.1 249 172-429 16-269 (275)
49 2q7f_A YRRB protein; TPR, prot 99.6 2.7E-13 9.2E-18 123.4 21.3 201 160-365 22-222 (243)
50 2h6f_A Protein farnesyltransfe 99.6 1E-12 3.5E-17 127.4 26.5 254 193-453 93-365 (382)
51 1ouv_A Conserved hypothetical 99.6 1.9E-11 6.4E-16 113.5 34.0 226 300-543 5-254 (273)
52 3u4t_A TPR repeat-containing p 99.6 8.6E-13 2.9E-17 122.4 24.6 122 241-363 12-135 (272)
53 2q7f_A YRRB protein; TPR, prot 99.6 3.5E-13 1.2E-17 122.7 21.2 200 196-399 22-221 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.8E-13 9.6E-18 125.8 19.4 221 209-434 17-243 (275)
55 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-12 5.3E-17 130.0 22.9 371 139-540 17-421 (452)
56 4a1s_A PINS, partner of inscut 99.5 1E-12 3.5E-17 129.9 19.2 278 196-505 47-372 (411)
57 3sf4_A G-protein-signaling mod 99.5 1.1E-12 3.8E-17 129.2 19.2 300 161-492 9-363 (406)
58 4a1s_A PINS, partner of inscut 99.5 3.3E-12 1.1E-16 126.2 21.2 270 163-434 50-371 (411)
59 3e4b_A ALGK; tetratricopeptide 99.5 8.9E-12 3.1E-16 124.5 24.2 188 268-471 178-388 (452)
60 3sf4_A G-protein-signaling mod 99.5 4.3E-12 1.5E-16 125.0 21.7 297 231-527 8-363 (406)
61 4e6h_A MRNA 3'-END-processing 99.5 1.5E-09 5E-14 112.4 40.3 414 124-543 63-573 (679)
62 3ro2_A PINS homolog, G-protein 99.4 7.7E-12 2.6E-16 119.4 20.8 278 199-505 7-332 (338)
63 2ond_A Cleavage stimulation fa 99.4 2.1E-10 7.3E-15 108.4 30.5 184 249-435 81-270 (308)
64 3ro2_A PINS homolog, G-protein 99.4 4.6E-12 1.6E-16 121.0 19.2 275 162-469 6-331 (338)
65 2ond_A Cleavage stimulation fa 99.4 2.1E-10 7.2E-15 108.5 29.7 216 250-470 34-270 (308)
66 3vtx_A MAMA; tetratricopeptide 99.4 3.4E-11 1.1E-15 104.4 22.0 166 160-329 4-169 (184)
67 3vtx_A MAMA; tetratricopeptide 99.4 9.3E-11 3.2E-15 101.6 23.0 166 196-364 4-169 (184)
68 3ulq_A Response regulator aspa 99.4 5.2E-11 1.8E-15 116.5 23.1 231 272-504 109-367 (383)
69 4abn_A Tetratricopeptide repea 99.4 2.2E-11 7.4E-16 122.5 20.6 212 212-429 83-315 (474)
70 4abn_A Tetratricopeptide repea 99.4 2.3E-11 7.7E-16 122.4 20.6 214 176-395 83-316 (474)
71 3nf1_A KLC 1, kinesin light ch 99.4 3.4E-12 1.2E-16 120.7 13.8 240 263-503 24-305 (311)
72 3ulq_A Response regulator aspa 99.4 5.3E-11 1.8E-15 116.4 22.7 234 307-543 109-371 (383)
73 3nf1_A KLC 1, kinesin light ch 99.4 2.5E-12 8.4E-17 121.7 12.5 169 160-329 26-223 (311)
74 1hz4_A MALT regulatory protein 99.3 1.4E-09 4.9E-14 105.7 28.3 270 236-505 18-322 (373)
75 1hz4_A MALT regulatory protein 99.3 1.4E-09 4.9E-14 105.8 27.3 301 198-506 15-350 (373)
76 3as5_A MAMA; tetratricopeptide 99.3 2.5E-10 8.7E-15 98.5 19.6 163 199-364 10-172 (186)
77 3as5_A MAMA; tetratricopeptide 99.3 5.4E-10 1.9E-14 96.4 21.0 164 233-399 9-172 (186)
78 3q15_A PSP28, response regulat 99.3 8.6E-10 2.9E-14 107.6 24.5 228 310-541 110-366 (378)
79 3q15_A PSP28, response regulat 99.3 1.3E-09 4.4E-14 106.3 25.6 231 270-504 105-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-10 1.1E-14 118.9 20.8 166 160-329 8-173 (723)
81 4e6h_A MRNA 3'-END-processing 99.2 7.7E-08 2.6E-12 99.6 37.8 393 141-540 48-533 (679)
82 4gyw_A UDP-N-acetylglucosamine 99.2 5.1E-10 1.8E-14 117.2 20.6 169 193-364 5-173 (723)
83 4i17_A Hypothetical protein; T 99.2 7.9E-09 2.7E-13 92.8 22.3 193 301-505 7-209 (228)
84 4i17_A Hypothetical protein; T 99.1 6.6E-09 2.3E-13 93.3 21.0 132 198-330 8-146 (228)
85 3edt_B KLC 2, kinesin light ch 99.1 5.9E-10 2E-14 103.4 14.4 205 194-399 40-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 5.3E-10 1.8E-14 103.7 14.0 202 302-504 44-280 (283)
87 1qqe_A Vesicular transport pro 99.1 4.3E-09 1.5E-13 98.5 18.5 193 311-503 47-267 (292)
88 2fo7_A Synthetic consensus TPR 99.1 9.9E-09 3.4E-13 83.0 16.8 128 164-294 4-131 (136)
89 3mv2_B Coatomer subunit epsilo 99.1 9.3E-08 3.2E-12 88.0 24.9 144 285-433 85-238 (310)
90 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.5E-13 81.7 17.3 129 199-329 3-131 (136)
91 3dra_A Protein farnesyltransfe 99.0 5.3E-07 1.8E-11 83.8 27.7 217 214-434 50-286 (306)
92 3qky_A Outer membrane assembly 99.0 2.6E-08 8.8E-13 91.5 18.8 211 159-389 13-250 (261)
93 3mv2_B Coatomer subunit epsilo 99.0 1.4E-07 4.8E-12 86.8 23.0 246 242-512 23-287 (310)
94 3qky_A Outer membrane assembly 99.0 4.1E-08 1.4E-12 90.1 18.5 210 194-425 12-251 (261)
95 3urz_A Uncharacterized protein 98.9 3.9E-08 1.3E-12 86.8 17.5 73 238-311 60-132 (208)
96 3dra_A Protein farnesyltransfe 98.9 7.4E-07 2.5E-11 82.8 26.2 229 166-399 38-286 (306)
97 3urz_A Uncharacterized protein 98.9 5.1E-08 1.8E-12 86.0 17.7 171 162-339 5-193 (208)
98 1qqe_A Vesicular transport pro 98.9 2.8E-08 9.6E-13 92.9 16.6 205 165-398 41-267 (292)
99 2r5s_A Uncharacterized protein 98.9 1.8E-08 6E-13 86.4 12.9 163 163-329 8-172 (176)
100 2pzi_A Probable serine/threoni 98.9 1.5E-08 5.3E-13 106.5 15.0 173 208-385 402-582 (681)
101 2uy1_A Cleavage stimulation fa 98.9 1E-05 3.5E-10 81.1 34.8 354 163-539 17-412 (493)
102 2pzi_A Probable serine/threoni 98.9 1.7E-08 6E-13 106.0 15.3 182 245-432 404-602 (681)
103 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.9E-07 6.6E-12 83.4 19.8 189 160-366 3-214 (225)
104 4ga2_A E3 SUMO-protein ligase 98.8 1.1E-08 3.9E-13 85.0 9.7 111 171-284 7-117 (150)
105 2r5s_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 84.3 13.3 156 240-398 14-171 (176)
106 3rjv_A Putative SEL1 repeat pr 98.8 4.7E-07 1.6E-11 80.0 20.8 175 320-506 5-198 (212)
107 3qou_A Protein YBBN; thioredox 98.8 8.8E-08 3E-12 89.2 16.1 166 159-328 115-282 (287)
108 2vsy_A XCC0866; transferase, g 98.8 1.1E-07 3.8E-12 98.0 18.2 133 160-295 22-157 (568)
109 4ga2_A E3 SUMO-protein ligase 98.8 2.6E-08 8.9E-13 82.8 10.7 57 271-328 36-92 (150)
110 3rjv_A Putative SEL1 repeat pr 98.8 6.4E-07 2.2E-11 79.2 20.3 128 265-399 17-157 (212)
111 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.5E-07 1.5E-11 81.0 19.6 187 196-401 3-214 (225)
112 3qou_A Protein YBBN; thioredox 98.8 1.5E-07 5.2E-12 87.6 16.8 163 232-397 117-281 (287)
113 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.5E-12 97.4 17.9 154 174-331 2-158 (568)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 1E-07 3.5E-12 89.8 14.5 159 309-468 44-222 (307)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 2.5E-07 8.4E-12 87.2 17.1 223 210-462 4-253 (307)
116 2uy1_A Cleavage stimulation fa 98.8 3E-05 1E-09 77.8 33.0 344 140-504 29-412 (493)
117 3q7a_A Farnesyltransferase alp 98.8 7E-06 2.4E-10 77.1 26.3 150 162-315 55-215 (349)
118 3q7a_A Farnesyltransferase alp 98.7 1.4E-05 4.6E-10 75.2 26.7 166 142-313 71-254 (349)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 5.6E-06 1.9E-10 77.2 23.8 127 165-293 79-223 (293)
120 3u3w_A Transcriptional activat 98.7 8.1E-06 2.8E-10 76.1 24.3 161 343-503 82-264 (293)
121 3u3w_A Transcriptional activat 98.7 4.8E-06 1.7E-10 77.6 22.4 91 168-258 82-181 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.5E-06 8.4E-11 75.2 18.4 129 338-472 8-152 (213)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2E-06 6.9E-11 75.8 17.6 127 200-330 9-150 (213)
124 1a17_A Serine/threonine protei 98.6 1.6E-06 5.3E-11 72.9 16.0 127 199-327 15-143 (166)
125 1a17_A Serine/threonine protei 98.6 1.6E-06 5.5E-11 72.8 15.8 130 162-294 14-145 (166)
126 1na0_A Designed protein CTPR3; 98.6 2E-06 6.9E-11 68.0 15.0 110 162-274 10-119 (125)
127 2c2l_A CHIP, carboxy terminus 98.6 2.8E-07 9.5E-12 85.5 11.0 99 196-295 3-101 (281)
128 4gco_A Protein STI-1; structur 98.6 1.3E-06 4.4E-11 69.9 13.3 94 200-294 16-109 (126)
129 1na0_A Designed protein CTPR3; 98.6 2.9E-06 1E-10 67.0 15.4 98 197-295 9-106 (125)
130 4gco_A Protein STI-1; structur 98.6 1.8E-06 6.2E-11 69.0 14.0 111 162-275 14-124 (126)
131 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.6E-11 72.7 12.7 123 163-295 11-133 (151)
132 2lni_A Stress-induced-phosphop 98.5 2E-06 6.7E-11 69.1 14.1 99 196-295 15-113 (133)
133 2lni_A Stress-induced-phosphop 98.5 1.7E-06 6E-11 69.4 13.5 122 157-281 12-133 (133)
134 2vyi_A SGTA protein; chaperone 98.5 3.6E-06 1.2E-10 67.2 15.3 118 197-316 12-129 (131)
135 2qfc_A PLCR protein; TPR, HTH, 98.5 1.8E-05 6.2E-10 73.7 22.1 164 197-361 75-262 (293)
136 4f3v_A ESX-1 secretion system 98.5 6.8E-06 2.3E-10 74.6 18.0 187 173-365 18-237 (282)
137 2vyi_A SGTA protein; chaperone 98.5 2.4E-06 8.2E-11 68.2 13.5 120 160-282 11-130 (131)
138 3gyz_A Chaperone protein IPGC; 98.5 3.6E-06 1.2E-10 69.5 13.9 96 408-505 38-133 (151)
139 3gw4_A Uncharacterized protein 98.5 3.2E-06 1.1E-10 73.7 14.6 97 266-362 26-133 (203)
140 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.5E-11 75.6 12.5 97 267-363 67-174 (203)
141 2e2e_A Formate-dependent nitri 98.5 9.4E-07 3.2E-11 75.5 10.5 122 172-296 21-145 (177)
142 3dss_A Geranylgeranyl transfer 98.4 0.00031 1.1E-08 65.6 27.2 187 209-399 41-266 (331)
143 2c2l_A CHIP, carboxy terminus 98.4 9.6E-07 3.3E-11 81.8 10.2 98 160-260 3-100 (281)
144 2vgx_A Chaperone SYCD; alterna 98.4 1.4E-06 4.9E-11 71.8 10.1 100 195-295 19-118 (148)
145 4f3v_A ESX-1 secretion system 98.4 2.9E-06 1E-10 77.0 12.8 129 269-400 105-237 (282)
146 2e2e_A Formate-dependent nitri 98.4 1.8E-06 6.2E-11 73.6 11.0 120 209-330 22-144 (177)
147 1p5q_A FKBP52, FK506-binding p 98.4 7.2E-06 2.5E-10 78.1 15.3 120 163-285 149-283 (336)
148 1elw_A TPR1-domain of HOP; HOP 98.4 1.6E-05 5.6E-10 61.9 14.9 104 163-269 6-109 (118)
149 3dss_A Geranylgeranyl transfer 98.4 0.00045 1.5E-08 64.5 26.8 184 248-435 46-267 (331)
150 1p5q_A FKBP52, FK506-binding p 98.4 8.8E-06 3E-10 77.5 15.7 150 175-328 127-292 (336)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 7.6E-07 2.6E-11 77.7 7.0 121 197-319 38-174 (198)
152 3upv_A Heat shock protein STI1 98.3 1.1E-05 3.9E-10 64.1 13.4 95 199-294 6-100 (126)
153 2vgx_A Chaperone SYCD; alterna 98.3 2.5E-06 8.6E-11 70.4 9.6 95 234-329 23-117 (148)
154 1elw_A TPR1-domain of HOP; HOP 98.3 2.6E-05 8.9E-10 60.7 15.2 98 197-295 4-101 (118)
155 3upv_A Heat shock protein STI1 98.3 1.3E-05 4.4E-10 63.8 13.0 112 161-275 4-121 (126)
156 2kck_A TPR repeat; tetratricop 98.3 7.7E-06 2.6E-10 63.1 10.7 59 164-224 9-67 (112)
157 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-05 4.5E-10 69.7 13.2 132 163-295 40-186 (198)
158 2xcb_A PCRH, regulatory protei 98.2 1.2E-05 4.1E-10 65.7 11.9 97 197-294 18-114 (142)
159 2xcb_A PCRH, regulatory protei 98.2 8.6E-06 2.9E-10 66.5 10.7 102 162-266 19-120 (142)
160 2kck_A TPR repeat; tetratricop 98.2 2.1E-05 7.1E-10 60.6 12.2 102 195-297 4-108 (112)
161 3q49_B STIP1 homology and U bo 98.2 3.5E-05 1.2E-09 62.2 13.7 99 195-294 7-105 (137)
162 3q49_B STIP1 homology and U bo 98.2 2.2E-05 7.5E-10 63.4 12.2 100 158-260 6-105 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 3.2E-05 1.1E-09 64.9 13.4 99 196-295 10-108 (164)
164 2dba_A Smooth muscle cell asso 98.2 6.7E-05 2.3E-09 61.2 15.2 96 197-294 28-127 (148)
165 2dba_A Smooth muscle cell asso 98.2 5.4E-05 1.8E-09 61.8 14.4 115 158-275 25-142 (148)
166 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.5E-10 62.8 11.3 94 200-294 7-107 (131)
167 4gcn_A Protein STI-1; structur 98.2 4.9E-05 1.7E-09 60.6 13.5 103 409-514 11-119 (127)
168 3sz7_A HSC70 cochaperone (SGT) 98.1 2.7E-05 9.3E-10 65.3 12.2 105 160-267 10-114 (164)
169 1elr_A TPR2A-domain of HOP; HO 98.1 4E-05 1.4E-09 60.9 12.8 107 409-518 7-119 (131)
170 4gcn_A Protein STI-1; structur 98.1 5.2E-05 1.8E-09 60.4 13.1 56 238-293 14-69 (127)
171 4b4t_Q 26S proteasome regulato 98.1 0.00016 5.6E-09 71.2 19.4 197 273-469 11-244 (434)
172 1hxi_A PEX5, peroxisome target 98.1 2.6E-05 9E-10 61.6 10.6 87 206-293 26-112 (121)
173 4b4t_Q 26S proteasome regulato 98.1 0.00018 6.3E-09 70.8 18.6 197 168-364 11-244 (434)
174 2xev_A YBGF; tetratricopeptide 98.0 9.2E-05 3.2E-09 58.8 13.2 98 166-266 7-110 (129)
175 3ro3_A PINS homolog, G-protein 98.0 4.7E-05 1.6E-09 63.0 11.3 26 478-503 131-156 (164)
176 1hxi_A PEX5, peroxisome target 98.0 5E-05 1.7E-09 60.0 10.7 97 164-263 20-116 (121)
177 2xev_A YBGF; tetratricopeptide 98.0 0.00021 7.2E-09 56.7 14.4 93 202-295 7-105 (129)
178 1wao_1 Serine/threonine protei 98.0 4.4E-05 1.5E-09 76.3 12.2 121 167-290 12-134 (477)
179 1wao_1 Serine/threonine protei 97.9 2.5E-05 8.6E-10 78.1 9.5 120 204-325 13-134 (477)
180 3ro3_A PINS homolog, G-protein 97.9 4.7E-05 1.6E-09 63.1 9.7 25 269-293 92-116 (164)
181 3k9i_A BH0479 protein; putativ 97.9 2E-05 6.9E-10 61.8 6.6 86 210-295 3-90 (117)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.8E-09 72.3 14.0 88 233-321 318-405 (457)
183 1ihg_A Cyclophilin 40; ppiase 97.9 0.00015 5.3E-09 69.7 13.4 27 199-225 225-251 (370)
184 1ihg_A Cyclophilin 40; ppiase 97.9 0.00015 5.3E-09 69.7 13.2 122 163-285 225-360 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00017 5.7E-09 71.8 13.9 89 266-356 317-405 (457)
186 1dce_A Protein (RAB geranylger 97.9 0.00054 1.8E-08 69.8 17.8 172 213-388 45-243 (567)
187 3k9i_A BH0479 protein; putativ 97.8 3.9E-05 1.3E-09 60.1 6.9 94 173-267 2-96 (117)
188 3rkv_A Putative peptidylprolyl 97.8 0.00032 1.1E-08 58.4 12.6 63 442-505 64-126 (162)
189 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00012 4E-09 69.7 10.7 147 163-330 181-328 (338)
190 1dce_A Protein (RAB geranylger 97.8 0.0018 6.2E-08 65.9 20.1 175 246-424 43-244 (567)
191 3rkv_A Putative peptidylprolyl 97.8 0.00033 1.1E-08 58.4 12.1 98 198-295 12-126 (162)
192 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00015 5E-09 69.0 8.7 149 197-365 179-328 (338)
193 1klx_A Cysteine rich protein B 97.6 0.0021 7.3E-08 51.7 14.5 110 316-436 10-127 (138)
194 2l6j_A TPR repeat-containing p 97.6 9.4E-05 3.2E-09 56.9 5.6 89 160-252 3-98 (111)
195 2hr2_A Hypothetical protein; a 97.6 0.00097 3.3E-08 54.5 11.7 95 199-293 13-129 (159)
196 2hr2_A Hypothetical protein; a 97.6 0.0013 4.4E-08 53.8 12.3 61 443-504 59-130 (159)
197 3n71_A Histone lysine methyltr 97.6 0.00033 1.1E-08 69.6 10.6 88 170-257 318-418 (490)
198 1klx_A Cysteine rich protein B 97.5 0.003 1E-07 50.8 14.4 111 280-401 9-127 (138)
199 3n71_A Histone lysine methyltr 97.5 0.00065 2.2E-08 67.6 11.4 124 381-504 319-463 (490)
200 1na3_A Designed protein CTPR2; 97.4 0.0018 6.3E-08 47.2 10.8 21 203-223 15-35 (91)
201 2kat_A Uncharacterized protein 97.4 0.001 3.6E-08 51.4 9.4 61 232-292 19-79 (115)
202 2l6j_A TPR repeat-containing p 97.4 0.00063 2.2E-08 52.1 8.1 65 198-263 5-69 (111)
203 1na3_A Designed protein CTPR2; 97.3 0.0023 7.8E-08 46.7 10.2 62 234-295 11-72 (91)
204 2kat_A Uncharacterized protein 97.3 0.0026 8.7E-08 49.2 10.9 78 251-329 4-81 (115)
205 1zu2_A Mitochondrial import re 97.2 0.00094 3.2E-08 54.5 7.7 97 421-521 17-134 (158)
206 1zu2_A Mitochondrial import re 97.1 0.001 3.4E-08 54.3 6.8 84 211-295 16-120 (158)
207 3ma5_A Tetratricopeptide repea 97.0 0.003 1E-07 47.5 8.6 64 264-328 5-68 (100)
208 3ma5_A Tetratricopeptide repea 97.0 0.0029 1E-07 47.5 8.1 64 231-294 6-69 (100)
209 3mkq_A Coatomer beta'-subunit; 96.9 0.066 2.2E-06 57.2 20.4 128 305-465 633-760 (814)
210 3ly7_A Transcriptional activat 96.4 0.066 2.3E-06 50.2 14.3 67 262-330 273-339 (372)
211 3ly7_A Transcriptional activat 96.4 0.081 2.8E-06 49.6 14.5 63 370-434 276-338 (372)
212 2kc7_A BFR218_protein; tetratr 96.3 0.0087 3E-07 44.5 6.5 25 199-223 37-61 (99)
213 3qww_A SET and MYND domain-con 96.2 0.015 5.1E-07 56.7 9.4 62 233-294 341-410 (433)
214 3qwp_A SET and MYND domain-con 96.2 0.021 7.2E-07 55.7 10.2 86 209-294 299-399 (429)
215 3mkq_A Coatomer beta'-subunit; 96.1 0.14 4.6E-06 54.8 17.2 129 169-330 607-736 (814)
216 1wy6_A Hypothetical protein ST 96.0 0.37 1.3E-05 37.4 14.0 139 244-403 19-157 (172)
217 3qww_A SET and MYND domain-con 96.0 0.018 6.2E-07 56.2 8.6 86 419-504 311-410 (433)
218 3qwp_A SET and MYND domain-con 95.9 0.039 1.3E-06 53.8 10.7 90 415-504 296-399 (429)
219 3mkq_B Coatomer subunit alpha; 95.8 0.48 1.7E-05 39.1 15.1 100 205-324 13-112 (177)
220 2kc7_A BFR218_protein; tetratr 95.7 0.073 2.5E-06 39.2 9.4 54 242-295 10-64 (99)
221 3bee_A Putative YFRE protein; 95.6 0.12 4E-06 37.9 9.8 66 439-505 4-72 (93)
222 3mkq_B Coatomer subunit alpha; 95.4 0.39 1.3E-05 39.7 13.1 45 277-327 16-60 (177)
223 1wy6_A Hypothetical protein ST 95.4 0.7 2.4E-05 35.9 15.5 139 208-367 18-156 (172)
224 1pc2_A Mitochondria fission pr 95.2 0.11 3.6E-06 41.9 8.9 65 439-503 30-98 (152)
225 2v5f_A Prolyl 4-hydroxylase su 95.2 0.16 5.5E-06 38.1 9.6 26 198-223 6-31 (104)
226 3bee_A Putative YFRE protein; 95.2 0.14 4.8E-06 37.5 8.9 48 248-295 25-72 (93)
227 3u64_A Protein TP_0956; tetrat 95.1 1.8 6.1E-05 39.0 17.8 85 282-368 179-272 (301)
228 2v5f_A Prolyl 4-hydroxylase su 94.9 0.33 1.1E-05 36.3 10.5 68 159-226 3-75 (104)
229 1pc2_A Mitochondria fission pr 94.3 0.37 1.3E-05 38.7 9.9 66 264-330 30-100 (152)
230 3u64_A Protein TP_0956; tetrat 93.9 0.44 1.5E-05 42.9 10.5 84 423-508 180-272 (301)
231 4h7y_A Dual specificity protei 93.7 0.67 2.3E-05 36.8 9.9 114 405-521 12-138 (161)
232 4ady_A RPN2, 26S proteasome re 92.8 12 0.00039 40.0 23.2 306 200-521 342-671 (963)
233 4h7y_A Dual specificity protei 92.5 1.9 6.7E-05 34.2 10.8 51 315-366 74-124 (161)
234 4ady_A RPN2, 26S proteasome re 92.3 13 0.00046 39.5 21.8 227 166-399 416-657 (963)
235 4gns_B Protein CSD3, chitin bi 92.2 0.68 2.3E-05 48.1 10.5 128 164-293 251-398 (754)
236 4b4t_P 26S proteasome regulato 92.1 5.8 0.0002 38.6 16.5 189 280-469 30-246 (445)
237 4fhn_B Nucleoporin NUP120; pro 92.0 3.6 0.00012 45.7 16.7 190 238-433 818-1048(1139)
238 1nzn_A CGI-135 protein, fissio 91.4 1.3 4.6E-05 34.1 8.8 83 422-505 17-103 (126)
239 4gns_B Protein CSD3, chitin bi 91.3 1.1 3.7E-05 46.6 10.7 126 199-327 250-397 (754)
240 2ff4_A Probable regulatory pro 91.1 2.5 8.6E-05 40.3 12.6 73 445-518 175-252 (388)
241 1nzn_A CGI-135 protein, fissio 89.8 1.7 5.8E-05 33.5 8.1 24 271-294 79-102 (126)
242 4fhn_B Nucleoporin NUP120; pro 89.2 14 0.00047 41.0 18.2 189 307-502 818-1047(1139)
243 2ff4_A Probable regulatory pro 89.2 1.5 5.1E-05 41.9 9.3 54 239-292 178-231 (388)
244 1v54_E Cytochrome C oxidase po 89.0 1.6 5.3E-05 31.9 6.7 61 214-274 27-87 (109)
245 4b4t_P 26S proteasome regulato 88.4 19 0.00065 34.9 19.9 51 175-225 30-84 (445)
246 1qsa_A Protein (soluble lytic 87.8 26 0.00087 35.6 24.7 141 164-317 10-152 (618)
247 3lpz_A GET4 (YOR164C homolog); 86.9 19 0.00064 33.1 22.8 111 163-289 37-159 (336)
248 3lvg_A Clathrin heavy chain 1; 86.5 9.4E-05 3.2E-09 70.7 -21.1 235 159-430 52-286 (624)
249 1qsa_A Protein (soluble lytic 85.5 34 0.0011 34.8 27.8 274 176-469 54-347 (618)
250 1v54_E Cytochrome C oxidase po 85.5 8.8 0.0003 28.0 8.9 42 391-432 30-71 (109)
251 2wpv_A GET4, UPF0363 protein Y 84.2 25 0.00084 32.1 21.6 112 163-290 35-158 (312)
252 2y69_E Cytochrome C oxidase su 82.8 5.1 0.00017 31.0 7.2 58 216-273 72-129 (152)
253 3txn_A 26S proteasome regulato 82.5 34 0.0012 32.4 19.4 93 271-363 104-208 (394)
254 3o48_A Mitochondria fission 1 81.7 13 0.00045 28.8 9.3 66 334-399 38-106 (134)
255 2y69_E Cytochrome C oxidase su 81.4 14 0.00048 28.6 9.1 61 459-520 71-131 (152)
256 3o48_A Mitochondria fission 1 80.1 19 0.00064 27.9 11.4 73 438-512 37-112 (134)
257 1zbp_A Hypothetical protein VP 79.1 20 0.00069 31.7 10.8 118 169-295 5-129 (273)
258 3lvg_A Clathrin heavy chain 1; 78.2 0.0053 1.8E-07 58.9 -12.8 195 160-384 82-276 (624)
259 1y8m_A FIS1; mitochondria, unk 77.9 23 0.0008 27.8 11.3 23 377-399 83-105 (144)
260 3ffl_A Anaphase-promoting comp 76.9 12 0.0004 30.4 8.0 115 376-503 25-149 (167)
261 4b4t_R RPN7, 26S proteasome re 76.7 22 0.00075 34.3 11.7 98 268-365 133-237 (429)
262 2p58_C Putative type III secre 76.0 19 0.00064 26.2 7.8 78 351-436 22-99 (116)
263 3ffl_A Anaphase-promoting comp 75.9 15 0.00051 29.8 8.4 117 166-294 25-150 (167)
264 2wpv_A GET4, UPF0363 protein Y 75.9 47 0.0016 30.2 21.6 80 405-503 133-215 (312)
265 1zbp_A Hypothetical protein VP 75.2 7.9 0.00027 34.2 7.1 54 242-295 7-60 (273)
266 3lpz_A GET4 (YOR164C homolog); 74.6 52 0.0018 30.2 23.7 82 404-504 134-215 (336)
267 3txn_A 26S proteasome regulato 73.0 64 0.0022 30.5 21.0 243 266-512 19-290 (394)
268 2uwj_G Type III export protein 73.0 18 0.00061 26.3 7.1 78 351-436 21-98 (115)
269 1y8m_A FIS1; mitochondria, unk 71.7 35 0.0012 26.8 12.4 68 438-505 36-106 (144)
270 4b4t_R RPN7, 26S proteasome re 71.3 43 0.0015 32.2 12.2 62 198-259 132-195 (429)
271 2jul_A Calsenilin; EF-hand, ca 70.4 54 0.0019 28.6 12.7 46 178-223 129-174 (256)
272 3esl_A Checkpoint serine/threo 70.1 41 0.0014 28.2 10.0 53 422-474 95-148 (202)
273 3eiq_C Programmed cell death p 67.4 52 0.0018 30.6 11.2 26 268-293 56-81 (358)
274 2uwj_G Type III export protein 66.2 32 0.0011 25.0 7.2 49 312-366 50-98 (115)
275 3esl_A Checkpoint serine/threo 65.7 59 0.002 27.2 11.6 77 155-232 71-150 (202)
276 1bpo_A Protein (clathrin); cla 61.2 1.1E+02 0.0037 29.5 12.1 126 125-257 329-454 (494)
277 2p58_C Putative type III secre 59.2 49 0.0017 24.1 8.5 50 311-366 50-99 (116)
278 1ug3_A EIF4GI, eukaryotic prot 57.6 32 0.0011 31.9 8.0 13 512-524 273-285 (339)
279 2d2s_A Exocyst complex compone 54.6 89 0.003 27.0 9.8 22 377-398 24-45 (235)
280 2keb_A DNA polymerase subunit 54.5 31 0.0011 24.8 5.4 58 110-167 27-88 (101)
281 4a1g_A Mitotic checkpoint seri 52.8 85 0.0029 24.9 9.5 55 458-512 82-137 (152)
282 1wdy_A 2-5A-dependent ribonucl 49.6 15 0.00053 32.4 4.4 22 419-440 192-213 (285)
283 2d2s_A Exocyst complex compone 49.3 59 0.002 28.1 7.8 90 165-257 22-116 (235)
284 1s6c_A KV4 potassium channel-i 49.1 1E+02 0.0035 24.7 11.2 63 161-223 38-101 (183)
285 3eiq_C Programmed cell death p 48.0 1.7E+02 0.0059 27.1 12.7 24 165-188 58-81 (358)
286 3hra_A Ankyrin repeat family p 47.2 12 0.00043 31.0 3.2 15 171-185 12-26 (201)
287 2zu6_B Programmed cell death p 46.9 75 0.0025 28.8 8.4 59 269-329 6-66 (307)
288 3fwb_A Cell division control p 45.0 69 0.0024 25.0 7.4 28 111-138 42-69 (161)
289 1wdy_A 2-5A-dependent ribonucl 43.8 40 0.0014 29.6 6.3 50 381-430 189-240 (285)
290 4gq2_M Nucleoporin NUP120; bet 43.2 2.4E+02 0.0081 30.4 13.0 108 238-350 816-950 (950)
291 2xig_A Ferric uptake regulatio 43.1 1E+02 0.0035 24.3 7.8 59 467-526 18-76 (150)
292 2qx5_A Nucleoporin NIC96; mRNA 42.4 2.8E+02 0.0097 28.2 12.6 287 166-504 157-484 (661)
293 4a1g_A Mitotic checkpoint seri 42.0 1.3E+02 0.0044 23.9 13.1 53 179-231 83-135 (152)
294 2wvi_A Mitotic checkpoint seri 42.0 1.4E+02 0.0046 24.1 9.7 55 459-513 78-133 (164)
295 2obh_A Centrin-2; DNA repair c 41.9 55 0.0019 25.2 6.1 27 112-138 26-52 (143)
296 3eu9_A Huntingtin-interacting 41.7 13 0.00045 31.9 2.5 15 452-466 218-232 (240)
297 3ltm_A Alpha-REP4; protein eng 41.3 1.5E+02 0.0051 24.5 19.0 59 335-398 125-183 (211)
298 2nsz_A Programmed cell death p 41.0 1.2E+02 0.0041 23.2 9.5 21 307-327 13-33 (129)
299 2ion_A PDCD4, programmed cell 39.9 1.4E+02 0.0048 23.7 8.5 22 306-327 14-35 (152)
300 3pvs_A Replication-associated 39.8 2.6E+02 0.009 26.8 12.9 142 316-472 166-326 (447)
301 3bge_A Predicted ATPase; struc 39.5 1.7E+02 0.0056 24.4 8.6 33 419-451 20-52 (201)
302 3bge_A Predicted ATPase; struc 39.4 1.7E+02 0.0057 24.4 8.9 35 314-348 20-54 (201)
303 3u0k_A Rcamp; fluorescent prot 39.3 1.1E+02 0.0037 29.3 8.3 29 111-139 321-349 (440)
304 3ctd_A Putative ATPase, AAA fa 39.3 1.7E+02 0.0059 24.6 9.4 35 279-313 48-82 (213)
305 3qrx_A Centrin; calcium-bindin 39.2 86 0.0029 24.7 7.1 28 111-138 47-74 (169)
306 2r9g_A AAA ATPase, central reg 39.2 1.7E+02 0.0058 24.4 10.0 36 314-350 27-62 (204)
307 2zu6_B Programmed cell death p 38.9 1.3E+02 0.0044 27.3 8.6 58 235-293 6-65 (307)
308 4aez_C MAD3, mitotic spindle c 38.6 1.8E+02 0.0063 24.7 9.2 53 178-230 131-183 (223)
309 2nsz_A Programmed cell death p 38.2 1.3E+02 0.0045 22.9 8.5 65 408-473 9-75 (129)
310 1exr_A Calmodulin; high resolu 37.8 80 0.0027 24.3 6.5 26 112-137 30-55 (148)
311 2wvi_A Mitotic checkpoint seri 37.1 1.6E+02 0.0056 23.7 11.0 76 155-233 57-132 (164)
312 2fe3_A Peroxide operon regulat 36.9 1.4E+02 0.0049 23.2 7.8 58 327-385 13-70 (145)
313 3pvs_A Replication-associated 36.8 2.9E+02 0.01 26.5 12.6 21 349-369 268-288 (447)
314 2fe3_A Peroxide operon regulat 36.1 1E+02 0.0035 24.1 6.7 59 467-526 13-71 (145)
315 2r9g_A AAA ATPase, central reg 35.9 1.9E+02 0.0066 24.1 10.1 37 418-455 26-62 (204)
316 2fu4_A Ferric uptake regulatio 35.6 1E+02 0.0036 21.0 6.6 60 467-527 8-68 (83)
317 3ltm_A Alpha-REP4; protein eng 35.6 1.9E+02 0.0063 23.9 19.4 107 335-453 94-200 (211)
318 3eu9_A Huntingtin-interacting 35.3 17 0.00059 31.1 2.3 7 453-459 186-192 (240)
319 2ion_A PDCD4, programmed cell 35.1 1.3E+02 0.0044 23.9 7.1 65 408-473 11-77 (152)
320 2bl0_C Myosin regulatory light 32.7 82 0.0028 23.9 5.8 27 112-138 26-52 (142)
321 2f2o_A Calmodulin fused with c 32.1 1.4E+02 0.0047 23.8 7.4 28 111-138 30-57 (179)
322 3ctd_A Putative ATPase, AAA fa 31.7 2.3E+02 0.0079 23.8 9.3 33 419-451 48-80 (213)
323 1mzb_A Ferric uptake regulatio 31.6 1.1E+02 0.0038 23.5 6.2 35 491-525 33-67 (136)
324 4ds7_A Calmodulin, CAM; protei 31.1 1.1E+02 0.0036 23.3 6.2 28 111-138 30-57 (147)
325 4ets_A Ferric uptake regulatio 30.8 1.4E+02 0.0048 23.9 6.8 45 203-247 38-84 (162)
326 1mzb_A Ferric uptake regulatio 30.8 1.6E+02 0.0055 22.6 7.0 33 352-384 34-66 (136)
327 3eyy_A Putative iron uptake re 30.7 1E+02 0.0035 24.1 5.9 58 467-526 10-67 (145)
328 2keb_A DNA polymerase subunit 30.7 1.5E+02 0.0052 21.3 6.0 56 460-517 28-88 (101)
329 4aez_C MAD3, mitotic spindle c 30.5 93 0.0032 26.6 5.8 50 354-403 132-182 (223)
330 1bpo_A Protein (clathrin); cla 30.4 3.7E+02 0.013 26.0 10.3 58 174-236 342-399 (494)
331 1top_A Troponin C; contractIle 29.7 1.1E+02 0.0037 23.8 6.1 27 112-138 40-66 (162)
332 1k1a_A B-cell lymphoma 3-encod 29.5 1.2E+02 0.0042 25.5 6.9 22 275-296 15-36 (241)
333 4ets_A Ferric uptake regulatio 29.5 94 0.0032 24.9 5.6 46 144-190 16-61 (162)
334 4fke_A Aminopeptidase N; zinc 29.4 5.5E+02 0.019 27.4 16.0 90 375-469 690-786 (909)
335 4e2i_2 DNA polymerase alpha su 29.1 68 0.0023 22.0 3.8 55 110-164 4-62 (78)
336 2rfa_A Transient receptor pote 28.6 83 0.0028 26.5 5.6 15 452-466 205-219 (232)
337 1k1a_A B-cell lymphoma 3-encod 28.0 1E+02 0.0035 26.0 6.1 16 313-328 18-33 (241)
338 2w57_A Ferric uptake regulatio 27.9 1.2E+02 0.0041 23.9 5.9 36 491-526 32-67 (150)
339 3hra_A Ankyrin repeat family p 27.8 38 0.0013 27.9 3.1 13 243-255 13-25 (201)
340 3ltj_A Alpharep-4; protein eng 27.5 2.5E+02 0.0085 22.8 20.0 17 370-386 151-167 (201)
341 3l6a_A Eukaryotic translation 27.4 3.8E+02 0.013 24.9 11.2 63 268-334 14-81 (364)
342 3jxi_A Vanilloid receptor-rela 27.4 42 0.0014 29.2 3.4 55 273-327 9-72 (260)
343 2xig_A Ferric uptake regulatio 27.4 2.2E+02 0.0077 22.2 8.5 44 307-350 32-75 (150)
344 3eyy_A Putative iron uptake re 26.8 1.5E+02 0.0051 23.2 6.2 34 352-385 33-66 (145)
345 3kea_A K1L; tropism, ANK repea 26.6 57 0.0019 29.0 4.2 12 348-359 170-181 (285)
346 2w57_A Ferric uptake regulatio 26.3 1.8E+02 0.0061 22.8 6.6 35 351-385 32-66 (150)
347 3t8k_A Uncharacterized protein 26.2 1.7E+02 0.0057 23.8 6.8 21 348-368 47-67 (186)
348 3kea_A K1L; tropism, ANK repea 25.8 48 0.0016 29.5 3.6 210 244-477 8-224 (285)
349 4g8k_A 2-5A-dependent ribonucl 25.7 89 0.0031 28.4 5.5 22 165-186 26-47 (337)
350 2lmt_A Calmodulin-related prot 25.4 2.3E+02 0.0078 21.7 9.0 97 111-223 29-128 (148)
351 2o03_A Probable zinc uptake re 24.9 1.1E+02 0.0039 23.3 5.1 45 482-526 16-60 (131)
352 2f6m_A Suppressor protein STP2 24.6 1E+02 0.0035 20.3 3.9 46 163-210 4-49 (65)
353 3qye_A TBC1 domain family memb 24.6 3.4E+02 0.012 24.5 9.3 42 430-471 212-253 (331)
354 1oyz_A Hypothetical protein YI 24.4 3.5E+02 0.012 23.4 23.6 153 335-504 104-262 (280)
355 4fke_A Aminopeptidase N; zinc 24.4 6.7E+02 0.023 26.7 16.2 159 340-505 690-860 (909)
356 2ijq_A Hypothetical protein; s 24.3 2.8E+02 0.0094 22.2 8.1 52 383-434 44-103 (161)
357 3jxi_A Vanilloid receptor-rela 24.2 15 0.00052 32.2 -0.2 56 308-363 9-73 (260)
358 3f3f_C Nucleoporin NUP85; stru 23.7 2.4E+02 0.0083 27.9 8.1 76 244-321 493-569 (570)
359 2mys_C Myosin; muscle protein, 23.3 2.4E+02 0.0081 21.2 9.9 26 112-137 28-53 (149)
360 2jnf_A Troponin C; stretch act 22.7 2.6E+02 0.0088 21.4 8.6 28 111-138 33-60 (158)
361 4b4t_S RPN3, 26S proteasome re 22.7 5.5E+02 0.019 25.2 11.6 62 232-295 231-299 (523)
362 4b4t_S RPN3, 26S proteasome re 22.5 5.6E+02 0.019 25.1 11.7 69 197-265 231-303 (523)
363 4gq2_M Nucleoporin NUP120; bet 22.4 7.4E+02 0.025 26.5 12.7 109 342-455 816-950 (950)
364 3mwm_A ZUR, putative metal upt 22.2 1E+02 0.0035 23.9 4.4 45 482-526 19-63 (139)
365 3dd4_A KV channel-interacting 22.2 3.5E+02 0.012 22.7 9.0 132 125-258 82-228 (229)
366 4g8k_A 2-5A-dependent ribonucl 22.1 1.1E+02 0.0037 27.8 5.3 14 112-125 38-51 (337)
367 1ug3_A EIF4GI, eukaryotic prot 21.6 1.1E+02 0.0037 28.2 5.1 64 374-438 14-78 (339)
368 3f3f_C Nucleoporin NUP85; stru 20.7 3.7E+02 0.013 26.7 8.6 72 213-285 497-568 (570)
369 2qac_A Myosin A tail domain in 20.6 1.9E+02 0.0065 21.9 5.9 28 111-138 34-61 (146)
370 1ify_A HHR23A, UV excision rep 20.5 1.6E+02 0.0053 18.0 4.7 35 112-148 9-43 (49)
371 2o03_A Probable zinc uptake re 20.5 1.5E+02 0.005 22.6 4.9 46 203-248 16-61 (131)
372 3utm_A Tankyrase-1; tankyrase, 20.3 3.6E+02 0.012 24.0 8.7 18 204-221 28-45 (351)
373 3t8k_A Uncharacterized protein 20.3 2.1E+02 0.007 23.3 6.2 26 309-334 43-68 (186)
374 2b7e_A PRE-mRNA processing pro 20.1 59 0.002 21.0 2.0 29 178-207 3-31 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-34 Score=298.02 Aligned_cols=418 Identities=11% Similarity=0.009 Sum_probs=357.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 009011 113 KVVEALKGCGVSVSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL 190 (546)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 190 (546)
..++.+. +..|+...+..+...+. ++.+.|+..|..+. ...++..+++.++.+|.+.|++++|.++|+++...
T Consensus 105 ~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 179 (597)
T 2xpi_A 105 FVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKED---LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179 (597)
T ss_dssp HHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC---GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT
T ss_pred HHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh---ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc
Confidence 3444444 34567777766666653 57888898888764 34688999999999999999999999999953221
Q ss_pred C--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH------------------
Q 009011 191 N--------------NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL------------------ 238 (546)
Q Consensus 191 ~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------------ 238 (546)
. ..+.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l 258 (597)
T 2xpi_A 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKL 258 (597)
T ss_dssp C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHS
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhc
Confidence 1 013458899999999999999999999999998754 3334443333
Q ss_pred --------------------HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 239 --------------------MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 239 --------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
+..|.+.|++++|.++|+++... +++..+++.++.+|.+.|++++|.++|+++.+.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 337 (597)
T 2xpi_A 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337 (597)
T ss_dssp CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc
Confidence 44566789999999999988764 689999999999999999999999999999987654
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 378 (546)
+..+|+.++.+|.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++
T Consensus 338 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 414 (597)
T 2xpi_A 338 -NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFA 414 (597)
T ss_dssp -CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78889999999999999999999999999663 4578899999999999999999999999998864 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|+++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999998653 478999999999999999999999999998874 557899999999999999999
Q ss_pred HHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHH
Q 009011 459 VLNFLLTHMFKN----DVSMD--AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKER 532 (546)
Q Consensus 459 ~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 532 (546)
+|..+++++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|...|++++|.+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999885 66777 7899999999999999999999999999875 3478899999999999999999999
Q ss_pred HHHHHHHHhhh
Q 009011 533 INKLLAHAKEQ 543 (546)
Q Consensus 533 ~~~~m~~~~~~ 543 (546)
+++.+.+..++
T Consensus 572 ~~~~~l~~~p~ 582 (597)
T 2xpi_A 572 HLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=295.10 Aligned_cols=405 Identities=10% Similarity=0.003 Sum_probs=353.7
Q ss_pred CCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHH
Q 009011 125 VSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST 202 (546)
Q Consensus 125 ~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~ 202 (546)
++...+..+++.+. ++.+.|+..|..+. +..|+..++..++.+|.+.|++++|..+|+.+.. .+.+..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHH
Confidence 34556666666553 57888999999886 3456889999999999999999999999999865 4678899999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh-C--------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKK-Y--------------GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ 267 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~-~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 267 (546)
++..|.+.|++++|+++|+++.. . +.+.+..+++.++.+|.+.|++++|.+.|+++....|.+..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 99999999999999999995422 1 23446889999999999999999999999999876666666
Q ss_pred HHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 268 IFNIL--------------------------------------IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309 (546)
Q Consensus 268 ~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 309 (546)
.+..+ +..|.+.|++++|.++|+++.+. .++..+|+.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55544 55666889999999999999876 478999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999987533 67789999999999999999999999998754 5678999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 390 ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 390 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998754 2368899999999999999999999999999875 55788999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK----GIVPY--HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+.++|.++++.+.+...
T Consensus 470 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 470 LFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred hCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 6554 7899999999999999999999999999876 66788 78999999999999999999999999877654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=4.4e-31 Score=265.56 Aligned_cols=212 Identities=18% Similarity=0.243 Sum_probs=104.3
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 285 AQKAMKEMFQQGFSPDV-VSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
++.+.+++.+.+..... ..++.+|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444455544443332 245556666666666666666666666666666666666666666554431100
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 443 (546)
.+.+.+++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 00112344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 444 YAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 444 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=7.3e-31 Score=263.98 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009011 249 EHAYKVFLEFKD-CIPLS-SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD---------F 317 (546)
Q Consensus 249 ~~a~~~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 317 (546)
..++.+.+++.+ +.... ..+++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344455566654 34433 346899999999999999999999999999999999999999999998765 6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 454 (546)
.+.|+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.5e-26 Score=226.59 Aligned_cols=372 Identities=11% Similarity=0.058 Sum_probs=273.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..+..+... .+.+...+..+...+...|++++|...++...+ . .+.+..+|..+...+.+.|++++|++
T Consensus 13 g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-Q-NPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 5677777777666532 234456677777777788888888888877776 3 56677788888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.|+++.+.. +.+..++..+..++.+.|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+..+.
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 888877643 4456677778888888888888888887777666667777777888888888888888888887766432
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 378 (546)
+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 168 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 168 -FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 567777788888888888888888888877642 256677777778888888888888888777654 33567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
..|.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888877542 256677777888888888888888888877763 556777778888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 009011 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEK 523 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 523 (546)
+|...++++.+..+. +..++..+...+.+.|++++|...|+++.+. .|+ ...+..+...+..
T Consensus 323 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 323 EAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHH
Confidence 888888887775433 5677788888888888888888888888754 343 4445555444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.2e-25 Score=221.66 Aligned_cols=366 Identities=10% Similarity=-0.017 Sum_probs=320.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
+...+.+.|++++|.+.++.+.+ . .|.+...+..+...+.+.|++++|...++...+.. +.+..++..+..++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~-~-~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR-Q-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 45667789999999999999987 3 66778888888999999999999999999988754 678899999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
++++|.+.|+++....|.+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999998877888889999999999999999999999999887533 456677788889999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
+.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+... .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 99874 3367889999999999999999999999999875 44678899999999999999999999999887542 367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
.++..+..++...|++++|.+.++++.+.+ +.+..+|..+...+.+.|++++|...++++.+..+ .+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHH
Confidence 889999999999999999999999999874 44578899999999999999999999999998654 3788999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++.+.+..+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999998653 34577888999999999999999999998876543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.9e-22 Score=202.83 Aligned_cols=362 Identities=10% Similarity=0.026 Sum_probs=294.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
.+...+..+...+.+.|++++|.++|+++.+ . .+.+..++..+...+.+.|++++|++.|+++.+.+ +.+..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4566788899999999999999999999988 3 56789999999999999999999999999998865 5678899999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSS---QIFNILI------------HGWCKTRKVDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
..++...|++++|.+.|+++....|.+. ..+..++ ..+.+.|++++|...|+++.+.... +...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 9999999999999999999988777666 6776664 4489999999999999999886543 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL------ 377 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 377 (546)
+..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 9999999999999999999999998763 3478899999999999999999999999998764 3345555544
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 378 ------IFILSKAGRVKDANEIFEDMKKQGVVPN-----VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAP 446 (546)
Q Consensus 378 ------i~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 446 (546)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|...++++.+.. +.+..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998753 44 4478888999999999999999999998763 456889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHHcC-----ChHHHHHHHHHH-HHCC--
Q 009011 447 LLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG------------LIESG-----KLELACSFFEEM-ISKG-- 506 (546)
Q Consensus 447 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~~g-- 506 (546)
+..+|...|++++|...++++.+..+. +...+..+..+ |...| +.+++.+.++++ .+..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999986554 56677666633 33334 556777777763 3221
Q ss_pred CCCCH-------HHHHHHHHHHHhcChhhHH
Q 009011 507 IVPYH-------STYKMLEEKLEKKRLGNAK 530 (546)
Q Consensus 507 ~~p~~-------~~~~~l~~~~~~~g~~~~a 530 (546)
..|+. ..+..+..+|...++.+..
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11222 2555666666666655543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.2e-21 Score=197.05 Aligned_cols=326 Identities=9% Similarity=0.018 Sum_probs=270.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 181 WELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 181 ~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
...+.+... . .+.+...+..+...+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...|+++..
T Consensus 12 ~~~~~~~~~-~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 12 DLGTENLYF-Q-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccc-c-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444443 3 66778899999999999999999999999998753 66789999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH------------HHHHhcCChhHHHHHHH
Q 009011 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV---VSYTCFI------------EHYCREKDFRKVDDTLK 325 (546)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li------------~~~~~~g~~~~a~~l~~ 325 (546)
..|.+..++..+...|.+.|++++|...|+++.+.... +. ..+..+. ..+.+.|++++|...++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77888999999999999999999999999999986432 33 5555553 44889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405 (546)
Q Consensus 326 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 405 (546)
++.+.. +.+...+..+..+|.+.|++++|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.+... .+
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 999874 3478889999999999999999999999998764 45789999999999999999999999999987532 24
Q ss_pred HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009011 406 VLTYNTM------------ISSACARSEEENALKLLQKMEEDLCKPD-----CETYAPLLKMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 406 ~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 468 (546)
...+..+ ...+...|++++|..+|+++.+. .|+ ...+..+...+.+.|++++|...++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445444 78899999999999999999885 344 4578888999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 009011 469 KNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLE 518 (546)
Q Consensus 469 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 518 (546)
+..+. +...|..+..+|...|++++|...++++.+. .|+ ...+..+.
T Consensus 323 ~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 323 QMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 86543 7899999999999999999999999999964 455 44444444
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.2e-22 Score=201.26 Aligned_cols=389 Identities=11% Similarity=0.034 Sum_probs=197.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..|..+.... |+..+|..+..++.+.|++++|.+.|+++.+ . .+.+..++..+...+.+.|++++|+.
T Consensus 20 g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALE-L-KPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-c-ChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57888888888887543 6788888888888888888888888888887 3 56677888888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------------------------------------Hhhc
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFL--------------------------------------EFKD 260 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--------------------------------------~~~~ 260 (546)
.|+++.+.+ +++......++..+........+.+.+. ....
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 888887764 2222222222211111100000000000 0000
Q ss_pred C-------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCh
Q 009011 261 C-------IPLSSQIFNILIHGWCK---TRKVDDAQKAMKEMFQ-----QGF--------SPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 261 ~-------~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~ 317 (546)
. .+.+...+..+...+.. .|++++|...++++.+ ... +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 0 01112223333333332 4555555555555544 200 01223444444555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555555544322 4444455555555555555555555554432 223444455555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS-MD- 475 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~- 475 (546)
.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... ++
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 443221 33444445555555555555555555554432 223344444555555555555555555554442111 01
Q ss_pred ---HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 476 ---AGTYASLVRGLIE---SGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 476 ---~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
...+..+...+.. .|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2244555555555 555555555555554432 12334444455555555555555555554443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.8e-21 Score=196.67 Aligned_cols=388 Identities=12% Similarity=-0.000 Sum_probs=295.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 009011 113 KVVEALKGCGVSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL 190 (546)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 190 (546)
..+....... |++..+..+...+ .++.+.|+..|..+... .+.+..+|..+..+|.+.|++++|.+.|+++...
T Consensus 27 ~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 27 KYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444443333 5666655555544 36889999999988743 2456789999999999999999999999999883
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----------------------------------CC-------
Q 009011 191 NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-----------------------------------GV------- 228 (546)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------------------------------~~------- 228 (546)
.+.+......++..+........+.+.+..+... ..
T Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
T 2gw1_A 103 --GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180 (514)
T ss_dssp --SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSC
T ss_pred --CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHh
Confidence 3444444444444444433333332222111100 00
Q ss_pred --CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhc-----C--C-------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 229 --EKDTRALSVLMDTLVK---GNSVEHAYKVFLEFKD-----C--I-------PLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 229 --~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
+.+...+......+.. .|++++|...++++.. . . +.+..++..+...+...|++++|...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 260 (514)
T 2gw1_A 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI 260 (514)
T ss_dssp CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1114444444444444 8999999999988765 2 2 344667889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009011 290 KEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369 (546)
Q Consensus 290 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 369 (546)
+++.+.... ...+..+...|...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 261 ~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 336 (514)
T 2gw1_A 261 KKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PE 336 (514)
T ss_dssp HHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SS
T ss_pred HHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hh
Confidence 999887544 8889999999999999999999999998864 3366788899999999999999999999999875 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC-KPD----CETY 444 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~ 444 (546)
+..++..+...|...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .++ ...+
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 677888999999999999999999999987542 3677889999999999999999999999876421 111 3378
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 445 APLLKMCCR---KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 445 ~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
..+...+.. .|++++|...++.+.+.... +..++..+...+.+.|++++|...|+++.+.. |+....
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~ 485 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEK 485 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHH
Confidence 889999999 99999999999999986544 78889999999999999999999999999764 655443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=8.4e-20 Score=187.85 Aligned_cols=351 Identities=12% Similarity=0.090 Sum_probs=181.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..|..+... .+.+..+|..+..+|.+.|++++|.+.|+++.+ . .+.+..++..+...+...|++++|++
T Consensus 39 g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALE-I-KPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677788888887643 245677888888888888888888888888877 3 56677888888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcc-----------------------------------------------------
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKG----------------------------------------------------- 245 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------------------------------------------- 245 (546)
.|+.+.. .|+.... .+..+...
T Consensus 115 ~~~~~~~---~~~~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 115 DLSVLSL---NGDFDGA--SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHhc---CCCCChH--HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 8864422 2221110 01111111
Q ss_pred --------------------------CCHHHHHHHHHHhhcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 246 --------------------------NSVEHAYKVFLEFKDCIPLSSQ-------IFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 246 --------------------------g~~~~a~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
|++++|..+++++....|.+.. ++..+...+...|++++|...+++.
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2344455555544443343322 2333444444555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009011 293 FQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTS 372 (546)
Q Consensus 293 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 372 (546)
.+.. |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 345 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY 345 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 5432 234444455555555555555555555555442 1234445555555555555555555555554432 22334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL-----CKPDCETYAPL 447 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l 447 (546)
++..+..+|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. .......+...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 44555555555555555555555554432 1233444555555555555555555555544321 00011112222
Q ss_pred HHHHHhc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 448 LKMCCRK----------KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 448 l~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
...+... |++++|...++++.+..+. +...+..+...|.+.|++++|.+.|+++.+
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444 5555555555555543322 444555555555555555555555555554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8.2e-19 Score=170.21 Aligned_cols=329 Identities=8% Similarity=-0.024 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
+..+..+...+...|++++|.+.|+++.+ . .+.+..++..+...+...|++++|++.|+++.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34455566666666666666666666665 2 44455666666666666666666666666665542 334555566666
Q ss_pred HHHccCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIP---LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 317 (546)
++...|++++|...+++.....| .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 66666666666666666554444 33333333321100 00112224566667777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766653 2355666666777777777777777777776653 345666677777777777777777777776
Q ss_pred HHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 009011 398 KKQGVVPNVLTYN------------TMISSACARSEEENALKLLQKMEEDLCKPDC----ETYAPLLKMCCRKKRMKVLN 461 (546)
Q Consensus 398 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~ 461 (546)
.+... .+...+. .+...+...|++++|...++++.+.. +.+. ..+..+...+...|++++|.
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 65432 1222222 22556777888888888888887753 1222 23445667788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009011 462 FLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLE 522 (546)
Q Consensus 462 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 522 (546)
..++++.+..+. +..+|..+...+...|++++|...|+++.+.. |+ ...+..+..+..
T Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHH
Confidence 888888875433 67788888888888888888888888888553 44 444555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.7e-18 Score=167.94 Aligned_cols=318 Identities=11% Similarity=0.020 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++....|.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556677777888888888888888877653 456777777777777888888888888777766666777777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFS--PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 354 (546)
...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 8888888888888777765320 02222222211110 1123345678899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
|.+.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998875 4578899999999999999999999999999864 34788899999999999999999999999988
Q ss_pred CCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHH
Q 009011 435 DLCKPDCETYA------------PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDA----GTYASLVRGLIESGKLELACSF 498 (546)
Q Consensus 435 ~~~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~ 498 (546)
.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 64 33344333 2356689999999999999999986544 33 3355678899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 499 FEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 499 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
+++..+.. +.+..++..+...+...|++++|.+.++...+..+.
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999763 336788889999999999999999999998776543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.4e-18 Score=178.72 Aligned_cols=372 Identities=10% Similarity=-0.001 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..|..+...+.+.|++++|.+.|+++.+ . .+.+..++..+...|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIE-L-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4557788999999999999999999998 3 66789999999999999999999999999998865 6678899999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCC-------------------------------------CCH------------------
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIP-------------------------------------LSS------------------ 266 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~-------------------------------------~~~------------------ 266 (546)
+...|++++|...|+.+..... ++.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998864421100 000
Q ss_pred ------------HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHH
Q 009011 267 ------------QIFNILIHGWCK--------TRKVDDAQKAMKEMFQQGFSPD------VVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 267 ------------~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~a 320 (546)
.....+...+.. .|++++|..+++++.+...... ..++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 022223322222 2589999999999987644311 23566777888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999986 4557888899999999999999999999998865 457888999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCC
Q 009011 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND-----VSMD 475 (546)
Q Consensus 401 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~ 475 (546)
.. .+...|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. ....
T Consensus 340 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 43 356788999999999999999999999998874 4456788899999999999999999999987622 2223
Q ss_pred HHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 476 AGTYASLVRGLIES----------GKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 476 ~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
...+......+... |++++|...|+++.+.. +.+...+..+...+...|+.++|.+.++...+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 44466667778888 99999999999998764 34567888999999999999999999999877644
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.9e-18 Score=164.35 Aligned_cols=283 Identities=10% Similarity=0.022 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+.++|...++++....|.+..++..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 334444444555555555555555554432 2333334444444445555555555555544444444555555555555
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 278 KTR-KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 278 ~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 356 (546)
..| ++++|...|++....... +...|..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence 555 555555555555543322 3344445555555555555555555555444211 2333444555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG--------VVPNVLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
+.++++.+.. +.+..++..+...+...|++++|...++++.+.. .+.....+..+...+...|++++|...
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555443 2344455555555555555555555555544311 012234444455555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 429 LQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 429 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..++
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 55554432 223344444444444444444444444444443322 333444444433
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.5e-18 Score=163.77 Aligned_cols=295 Identities=10% Similarity=-0.035 Sum_probs=249.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
+...+...+..+...+...|++++|.++|+++.+. .+.+...+..++..+.+.|++++|+.+++++.+.. +.+...+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 44566677888999999999999999999999883 55666777778899999999999999999998754 5677888
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 236 SVLMDTLVKGN-SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314 (546)
Q Consensus 236 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 314 (546)
..+...+...| ++++|.+.|++.....|.+...|..+...+...|++++|...++++.+.... +...+..+...|...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 99999999999 9999999999998878888999999999999999999999999999887543 456677789999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD--------CLPDTSFYSSLIFILSKAGR 386 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 386 (546)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..+|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998874 3467889999999999999999999999987632 13346788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh
Q 009011 387 VKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC-CRKKRM 457 (546)
Q Consensus 387 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~ 457 (546)
+++|...+++..+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999999999987643 367889999999999999999999999998764 44667777777766 344443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.7e-18 Score=168.95 Aligned_cols=287 Identities=11% Similarity=0.033 Sum_probs=161.3
Q ss_pred cCChHHHHH-HHHHhhhCCC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 210 GGRYDDAVE-AFRGMKKYGV-EK--DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 210 ~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
.|++++|++ .|++..+... .| +...+..+...+...|++++|...|+++....|.+..++..+...+.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 467777777 6665543211 11 2345666677777777777777777777766667777777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI---------------VMHALGKAK 350 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~---------------li~~~~~~g 350 (546)
...|+++.+.... +..++..+...|...|++++|.+.++++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 7777777765432 5667777777777777777777777777765322 1111110 122222555
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
++++|...++++.+.... ++..++..+...|.+.|++++|...++++.+.. +.+...|..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665554311 135555556666666666666666666555432 123455555556666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHcCChHHHHHHH
Q 009011 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM----------DAGTYASLVRGLIESGKLELACSFF 499 (546)
Q Consensus 430 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~ 499 (546)
+++.+.. +.+..++..+...|.+.|++++|...++++.+..+.. ...+|..+..+|...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 6655542 2334555555555556666666666555555422111 1455555555555555555555554
Q ss_pred H
Q 009011 500 E 500 (546)
Q Consensus 500 ~ 500 (546)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 4
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=8.5e-15 Score=148.59 Aligned_cols=337 Identities=13% Similarity=0.073 Sum_probs=225.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGK----SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVR----G 210 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~----~ 210 (546)
.+.+.|+..|..+... -+...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .
T Consensus 57 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCC
Confidence 4666677777766543 345666677777776 777777777777776532 45566666666666 6
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCH
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK----GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK----TRKV 282 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 282 (546)
+++++|++.|++..+.| +...+..+...|.. .++.++|.+.|++..+. .+...+..|...|.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 67777777777776644 45566666666665 56777777777766542 356667777777776 6777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 009011 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINE 354 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 354 (546)
++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 77777777777653 45566666666665 667777777777776654 44455566666666 677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKA-----GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS---EEENAL 426 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~ 426 (546)
|..+|++..+.| +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 777777776654 445566666666665 67777777777777653 4455666666666545 667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 009011 427 KLLQKMEEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSF 498 (546)
Q Consensus 427 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 498 (546)
++|++..+.| +...+..+...|.. .++.++|...+++..+.+ +...+..+...|.+ .+++++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777777653 45666666666666 677777777777777654 45666667777766 6777777777
Q ss_pred HHHHHHCC
Q 009011 499 FEEMISKG 506 (546)
Q Consensus 499 ~~~m~~~g 506 (546)
|++..+.+
T Consensus 426 ~~~A~~~~ 433 (490)
T 2xm6_A 426 FDTASTND 433 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 77777665
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=7e-18 Score=164.56 Aligned_cols=292 Identities=9% Similarity=-0.017 Sum_probs=224.5
Q ss_pred HcCCChHHHHH-HHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 172 GKSKKFCLMWE-LVKEMDELNNGYV--SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 172 ~~~~~~~~a~~-l~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
...|++++|.+ .|++.....+..+ +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577788877 7775544221111 34557778888889999999999999988764 56778888888889999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHh
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC---------------FIEHYCR 313 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~ 313 (546)
++|.+.++++....|.+..++..+...|...|++++|...++++...... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999998887777778888999999999999999999999998876433 2222211 2334448
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQEKGCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
.|++++|...++++.+..... +..++..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998864321 57889999999999999999999999998764 4468899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHHHH
Q 009011 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP----------DCETYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~ 462 (546)
.++++.+.. +.+...+..+..++.+.|++++|...++++.+..... ...+|..+..++...|+.++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998754 2367889999999999999999999999987642111 16789999999999999999998
Q ss_pred HHHHH
Q 009011 463 LLTHM 467 (546)
Q Consensus 463 ~~~~m 467 (546)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=3e-14 Score=144.60 Aligned_cols=352 Identities=13% Similarity=0.037 Sum_probs=296.4
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCC
Q 009011 160 TPEMYNTMVDVLGK----SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVR----GGRYDDAVEAFRGMKKYGVEKD 231 (546)
Q Consensus 160 ~~~~~~~ll~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~ 231 (546)
+...+..|...|.. .+++++|.+.|+...+.+ +...+..+...|.. .+++++|++.|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 55666777777777 899999999999998743 46788888889988 899999999999998754 6
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 232 TRALSVLMDTLVK----GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK----TRKVDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 232 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
...+..|...|.. .++.++|.+.|++..+. .+...+..|...|.. .++.++|.+.|++..+.| +...
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 6777778888887 78999999999887653 467788889888887 789999999999998874 6788
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 304 YTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYS 375 (546)
Q Consensus 304 ~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (546)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888888 899999999999998876 56677788888876 789999999999998875 556777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 376 SLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR-----SEEENALKLLQKMEEDLCKPDCETYAP 446 (546)
Q Consensus 376 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ 446 (546)
.+...|.. .+++++|.+.|++..+.| +...+..+...|... ++.++|..++++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77778877 899999999999998764 566777788888877 89999999999998875 4567777
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 447 LLKMCCRKK---RMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 447 ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
+...|...| +.++|..++++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777766 7899999999999874 67888999999988 899999999999999886 5677778888
Q ss_pred HHHh----cChhhHHHHHHHHHHHHh
Q 009011 520 KLEK----KRLGNAKERINKLLAHAK 541 (546)
Q Consensus 520 ~~~~----~g~~~~a~~~~~~m~~~~ 541 (546)
.|.. .++.++|.+.++...+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8887 789999999999988766
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=8.8e-18 Score=163.79 Aligned_cols=268 Identities=9% Similarity=-0.070 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009011 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMH 344 (546)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~ 344 (546)
+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3444666777777777777777777777665432 56677777777777777777777777777653 235667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 009011 345 ALGKAKQINEALKVYEKMKSDDCL---------PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PNVLTYNTMIS 414 (546)
Q Consensus 345 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~ 414 (546)
+|...|++++|...++++.+.... .....+..+...+.+.|++++|.+.++++.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 777777777777777777654210 01223344567788888888888888888765422 15778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 009011 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL 494 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 494 (546)
.+...|++++|.+.++++.+.. +.+..++..+..+|...|++++|...++++.+..+. +..+|..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887764 446778888888888888888888888888876544 57788888888888899999
Q ss_pred HHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcChhhHHHHHHHH
Q 009011 495 ACSFFEEMISKGIV-----------PYHSTYKMLEEKLEKKRLGNAKERINKL 536 (546)
Q Consensus 495 A~~~~~~m~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 536 (546)
|...|+++.+.... .+..+|..+..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 98888888754210 1256778888888888888888776553
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=6.5e-15 Score=151.05 Aligned_cols=407 Identities=12% Similarity=0.068 Sum_probs=288.7
Q ss_pred CCHHHHHHHHHhh-cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 009011 125 VSNSLVEQTLRRF-SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203 (546)
Q Consensus 125 ~~~~~~~~~l~~~-~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~l 203 (546)
-+...+..++... .++.+.|...|..+.. -++.+...|...+..+.+.|+++.|.++|+++.. ..|+...|...
T Consensus 11 ~~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIREAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCChHHHHHH
Confidence 3556666666643 3577888888888873 4566778888999999999999999999999887 33477777766
Q ss_pred HHHH-HhcCChHHHHH----HHHHhhh-CCCC-CCHHHHHHHHHHHHc---------cCCHHHHHHHHHHhhcCCCCC--
Q 009011 204 MRRL-VRGGRYDDAVE----AFRGMKK-YGVE-KDTRALSVLMDTLVK---------GNSVEHAYKVFLEFKDCIPLS-- 265 (546)
Q Consensus 204 i~~~-~~~g~~~~A~~----~~~~m~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~-- 265 (546)
+... ...|+.++|.+ +|++..+ .|.. ++...|...+....+ .|+++.|..+|++... .|.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~ 164 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINI 164 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhH
Confidence 6533 34577766655 6666644 3443 345666666665544 6788899999988876 4433
Q ss_pred HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc-
Q 009011 266 SQIFNILIHGWC-------------KTRKVDDAQKAMKEMF------QQG---FSPD--------VVSYTCFIEHYCRE- 314 (546)
Q Consensus 266 ~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~~~- 314 (546)
...|........ +.++++.|..++.++. +.. +.|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 234444333221 2345666776666532 111 2333 24555554333222
Q ss_pred ---CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHH
Q 009011 315 ---KDF----RKVDDTLKEMQEKGCKPSVITYTIVMHALGK-------AKQIN-------EALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 315 ---g~~----~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~ 373 (546)
++. +++..+|++..... +-+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 36778888888763 3467788888887775 78887 89999999987323456889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-V-LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKM- 450 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 450 (546)
|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+.++|.++|++..+.. +.+...|......
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 999999999999999999999999985 343 3 588988998899999999999999998763 2233333332222
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcChh
Q 009011 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI-VPY--HSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~l~~~~~~~g~~ 527 (546)
+...|+.++|..+|+...+..+. +...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999999886543 688999999999999999999999999998742 332 45777888888888999
Q ss_pred hHHHHHHHHHHHHhh
Q 009011 528 NAKERINKLLAHAKE 542 (546)
Q Consensus 528 ~~a~~~~~~m~~~~~ 542 (546)
+.+.++.+++.+.-+
T Consensus 480 ~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 480 ASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCc
Confidence 999999998876544
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.6e-17 Score=159.45 Aligned_cols=233 Identities=9% Similarity=-0.032 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
...+..+...+.+.|++++|.+.|+++.+ . .+.+..++..+...+.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL-Q-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34466677777777777777777777776 2 45566777777777777777777777777776543 445666666666
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLS----------SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS-PDVVSYTCFIE 309 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~ 309 (546)
++...|++++|.+.++++....|.+ ...+..+...+.+.|++++|...++++.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 6677777777776666654422211 112223355555555555555555555554221 13445555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
.|...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 5555555555555555555442 2234455555555555555555555555555432 2234455555555555555555
Q ss_pred HHHHHHHHH
Q 009011 390 ANEIFEDMK 398 (546)
Q Consensus 390 A~~~~~~~~ 398 (546)
|...|+++.
T Consensus 300 A~~~~~~al 308 (365)
T 4eqf_A 300 AVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=6.2e-17 Score=154.84 Aligned_cols=277 Identities=10% Similarity=0.005 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+-.+...+...|++++|..+|+++.+. .+.+..++..+...+.+.|++++|++.|+++.+.. +.+..++..+..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34556667777777777777777777762 45566777777777777777777777777776643 4456666666677
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCChhH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF-IE-HYCREKDFRK 319 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~-~~~~~g~~~~ 319 (546)
+...|++++|.+.++++....|.+...+..+.... |+......+ .. .+...|++++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 77777777777777666554444433333330000 000000001 11 1334445555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555444321 134445555555555555555555555554432 22344555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009011 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP-----------DCETYAPLLKMCCRKKRMKVLNFLLTH 466 (546)
Q Consensus 400 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 466 (546)
.. +.+...+..+...+...|++++|.+.++++.+..... +..++..+..++...|+.++|..++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 32 1234455555555555555555555555554432110 244555555555555555555555543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2.2e-16 Score=151.03 Aligned_cols=279 Identities=8% Similarity=-0.002 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
..+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++....|.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344555666777777777777777776543 4456666666667777777777777777666655666666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCHHHH
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV-MH-ALGKAKQINEA 355 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~a 355 (546)
..|++++|.+.++++...... +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 777777777777766655322 11111111000 0111111122 22 36788999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
.+.++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999998875 4478899999999999999999999999998754 236788999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM-----------DAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 436 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
. +.+..++..+...+...|++++|...++++.+..... +...|..+..++.+.|++++|..++++..
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4 4567889999999999999999999999998854332 47889999999999999999999987543
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=177.90 Aligned_cols=117 Identities=14% Similarity=0.313 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKD----CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 232 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
..||+++|++||+.|++++|.++|.+|.+ +..||..+||+||++||+.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666655432 45666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 308 IEHYCREKDF-RKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 308 i~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666653 5566666666666666666666666554433
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=176.64 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKK---QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYA 445 (546)
Q Consensus 369 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 445 (546)
.-..+|+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 009011 446 PLLKMCCRKKRM-KVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY------HSTYKMLE 518 (546)
Q Consensus 446 ~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~ 518 (546)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+ +++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999874 788899999999999999999999887665543 44444444 3355554 34444555
Q ss_pred HHHHhcC
Q 009011 519 EKLEKKR 525 (546)
Q Consensus 519 ~~~~~~g 525 (546)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5554443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=6.1e-17 Score=155.43 Aligned_cols=280 Identities=10% Similarity=0.075 Sum_probs=128.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+.+.|..++... +++.+|..|..++.+.|++++|++.|.+. ++..+|..++..+...|++++|+..
T Consensus 18 ~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 18 NLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 456677777766 33468999999999999999999999653 3466888889999999999999997
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
++..++. .+++.+.+.++.+|.+.|+++++.++++ +|+..+|+.+...|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 7777663 5567888899999999999999887774 356679999999999999999999999977
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHH
Confidence 36889999999999999999999988 27889999999999999999996555432 223334556889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE-DLCKP------DCETYAPLLKMCC 452 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~~~~~ll~~~~ 452 (546)
.|.+.|++++|..+++...... .-....|+-+..+|++- ++++..+.++.... .+++| +...|.-+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888654 34567788887777775 55555555443322 12222 3355777777788
Q ss_pred hcCChHHHHHH
Q 009011 453 RKKRMKVLNFL 463 (546)
Q Consensus 453 ~~g~~~~a~~~ 463 (546)
..++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 88888877653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=3.2e-15 Score=140.16 Aligned_cols=251 Identities=14% Similarity=0.147 Sum_probs=128.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDT--RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
+.....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+++..++..+...+...|+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3344556666666666554322 2222 2334445556666666655543322 2334445555555666666666
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 283 DDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEK 361 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 361 (546)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655544333 233444444555566666666665554 23455555555556666666666666666
Q ss_pred HHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 362 MKSDDCLPDTSF---YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438 (546)
Q Consensus 362 ~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 438 (546)
+.+.. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55543 22111 1112222333355666666666555532 2345555555555566666666666666555542 3
Q ss_pred CCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 009011 439 PDCETYAPLLKMCCRKKRMKV-LNFLLTHMFKN 470 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~ 470 (546)
-+..++..++..+...|+.++ +..+++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344555555555555555543 34555555543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=5.2e-15 Score=138.74 Aligned_cols=272 Identities=14% Similarity=0.090 Sum_probs=215.2
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLS-SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
.-....|++..|...++.+....|.+ ......+.++|...|++++|...++.. -.|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34556799999999988776533333 245567789999999999999866542 3467788889999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+..++..++..|.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887545 566677777899999999999999987 467889999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 398 KKQGVVPNVLTY---NTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 398 ~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..+.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 8764 554322 123344445689999999999999873 668889999999999999999999999999997665
Q ss_pred CHHHHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHH
Q 009011 475 DAGTYASLVRGLIESGKLEL-ACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAK 530 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 530 (546)
+..++..++..+...|+.++ +.++++++.+.. |+.... .+...+.+.++++
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~---~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFI---KEYRAKENDFDRL 284 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHH---HHHHHHHHHHHHH
Confidence 88899999999999999976 578999988654 655432 2334444444443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.1e-16 Score=153.53 Aligned_cols=284 Identities=12% Similarity=0.110 Sum_probs=134.0
Q ss_pred HcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 172 GKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
-+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 367889999999998843 35999999999999999999999965 36778999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 331 (546)
...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 81 VKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 9988777664 4457889999999999999999998875 267789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 332 CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNT 411 (546)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 411 (546)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 26899999999999999999999988 27899999999999999999996655542 234444567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC------CHHHHHHHHH
Q 009011 412 MISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSM------DAGTYASLVR 484 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~------~~~~~~~li~ 484 (546)
++..|.+.|++++|..+++...... +-....|+-+.-+|++- ++++..+.++.... -+++| +...|.-++-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998765 55667777776666653 34444433332222 12222 3457889999
Q ss_pred HHHHcCChHHHHHH
Q 009011 485 GLIESGKLELACSF 498 (546)
Q Consensus 485 ~~~~~g~~~~A~~~ 498 (546)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 99999999988763
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-13 Score=139.52 Aligned_cols=369 Identities=11% Similarity=-0.025 Sum_probs=248.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL-------NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY---- 226 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 226 (546)
......||.|..++...|++++|++.|++..+. ...+....+|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567999999999999999999999876542 113456788999999999999999999999887541
Q ss_pred -C--CCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 009011 227 -G--VEKDTRALSVLMDTLVK--GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW---CKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 227 -~--~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
+ ......++.....++.. .+++++|.+.|++.....|.++..+..+...+ ...++.++|.+.+++..+..+.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 12235666666555544 45789999999998877778888877766664 4557778899999888776433
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009011 299 PDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374 (546)
Q Consensus 299 ~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 374 (546)
+...+..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 55666655555444 467889999999988774 3367788899999999999999999999998865 3466677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 375 SSLIFILSKA-------------------GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 375 ~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
..+..+|... +.+++|...+++..+... .+...+..+...+...|++++|.+.|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7666665432 235677778887776432 34567788888999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 436 LCKPDCE--TYAPLLK-MCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 436 ~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
...+... .+..+.. .....|+.++|...+++..+.... ..... +....+.++++...+.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHHHHHHHHHHhC-CCCHH
Confidence 4332221 1222222 245688999999999998875433 22111 12233444555555433 33456
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 513 TYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 513 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
+|..+...+...|+.++|.+.+++.-+.+.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 777888888888888888888887765543
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.2e-12 Score=140.20 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=145.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...+...|.+++|.++|++.. -.....+.++ ...+++++|.++.+++ .+..+|..+..++.+.|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 445556666666666666641 1111122222 1445566666655544 23555666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
+|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 666665443 245555556666666666666666665544432 12112223555555555555322221
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------
Q 009011 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED-------- 435 (546)
Q Consensus 364 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------- 435 (546)
+ .++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++....
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 123344444555555555555555555543 24555555555555555555555443110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChHHHHH
Q 009011 436 ----------------LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES--GKLELACS 497 (546)
Q Consensus 436 ----------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~ 497 (546)
++..+...+..++..|.+.|.+++|..+++.....+ .-....|+-+...|++. ++..++.+
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 012234455566666666677777777666665543 22344555555555442 33444444
Q ss_pred HHHHHHHCCCCC------CHHHHHHHHHHHHhcChhhHHH
Q 009011 498 FFEEMISKGIVP------YHSTYKMLEEKLEKKRLGNAKE 531 (546)
Q Consensus 498 ~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~ 531 (546)
+|..-. ++.| +...|..++-.|.+.|+++.|.
T Consensus 1338 ~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1338 LFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 444322 2222 3445666666677777777655
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.1e-12 Score=132.26 Aligned_cols=384 Identities=9% Similarity=0.032 Sum_probs=271.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HcCCChHHHHH----HHHH
Q 009011 114 VVEALKGCGVSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVL-GKSKKFCLMWE----LVKE 186 (546)
Q Consensus 114 ~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~----l~~~ 186 (546)
+++.+.. -.+-+...+....... .++.+.|..+|..+... .|+...|...+... ...|+.+.|.+ +|+.
T Consensus 34 ~~e~al~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~ 109 (530)
T 2ooe_A 34 TYERLVA-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109 (530)
T ss_dssp HHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 4444333 2445666777666654 35788999999998643 36788888777533 45677777665 7777
Q ss_pred HHhh-CCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-------------H
Q 009011 187 MDEL-NNGYVSLATMSTIMRRLVR---------GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL-------------V 243 (546)
Q Consensus 187 m~~~-~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~-------------~ 243 (546)
.... +..+.+...|...+....+ .|++++|..+|++..+.........|....... .
T Consensus 110 al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 189 (530)
T 2ooe_A 110 ALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 189 (530)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 7653 2134577888888877655 789999999999998732111123333222211 1
Q ss_pred ccCCHHHHHHHHHHh------hcC----CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCC
Q 009011 244 KGNSVEHAYKVFLEF------KDC----IPLS--------SQIFNILIHGWCKT----RKV----DDAQKAMKEMFQQGF 297 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~------~~~----~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~ 297 (546)
..+++..|..++..+ .+. ++|+ ...|...+...... ++. +.+..+|++.....+
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p 269 (530)
T 2ooe_A 190 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG 269 (530)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC
Confidence 235567777766542 111 3444 24566665443332 232 477788998887633
Q ss_pred CCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 298 SPDVVSYTCFIEHYCR-------EKDFR-------KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 298 ~~~~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
-+...|..+...+.+ .|+++ +|..++++..+.-.+-+...|..++..+.+.|++++|..+|+++.
T Consensus 270 -~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 270 -HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 367888888887775 79987 899999998863234468889999999999999999999999999
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 364 SDDCLPD-TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISS-ACARSEEENALKLLQKMEEDLCKPDC 441 (546)
Q Consensus 364 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~ 441 (546)
+.. +.+ ..+|...+..+.+.|++++|.++|++..+... .+...|...... +...|+.++|..+|+...+.. +-+.
T Consensus 349 ~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~ 425 (530)
T 2ooe_A 349 AIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 425 (530)
T ss_dssp HSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCH
T ss_pred Ccc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCH
Confidence 863 223 35888899999999999999999999987532 233333332222 346899999999999998763 3467
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV-SM--DAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..+..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998643 22 3568888899889999999999999998764
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2.1e-12 Score=138.24 Aligned_cols=353 Identities=12% Similarity=0.109 Sum_probs=249.1
Q ss_pred CCHHHHHHHHHhhcCChhHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHH
Q 009011 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKT-QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMST 202 (546)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~ 202 (546)
-++++|..||... ...-..+.+|... ...-..+++--...+..|...|.+.+|+++++++.-... ...+...-+.
T Consensus 951 ~d~~lW~~vl~~~---n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLES---NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCC---cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 4666777776432 1233346666541 122245666667899999999999999999999985221 1135566667
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
++....+. +..+..++.+++... + ...+...+...|.+++|..+|++.. ......+.++. ..|++
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nl 1092 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNL 1092 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhH
Confidence 77777777 557777777766422 1 2336677889999999999999864 22233344433 78899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. -|...|..++.+|.+.|++++|.+.|...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988663 6788999999999999999999999663 37778999999999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 363 KSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 442 (546)
.+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... .
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence 8764 34444456999999999988644443 2 356777888999999999999999999985 4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
.|..+..++++.|+++.|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHH
Confidence 79999999999999999999998763 345555555555555555444443332 1223334444445555
Q ss_pred hcChhhHHHHHHHH
Q 009011 523 KKRLGNAKERINKL 536 (546)
Q Consensus 523 ~~g~~~~a~~~~~~ 536 (546)
+.|.+++|..+++.
T Consensus 1292 ~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1292 DRGYFEELITMLEA 1305 (1630)
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555544433
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.6e-14 Score=128.26 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 009011 267 QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC--KPS----VITYT 340 (546)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~----~~~~~ 340 (546)
..+..+...+...|++++|...|++..+.. .+...|..+...|...|++++|.+.++...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445566666666666666666666666655 4556666666666666777777666666655321 112 35666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS 420 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 420 (546)
.+...+.+.|++++|...|+++.+.. |+. ..+.+.|++++|...++++.+... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 66677777777777777777766643 332 335556667777777777766421 23455666677777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009011 421 EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500 (546)
Q Consensus 421 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 500 (546)
++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777776653 345667777777777777777777777777775433 56777777777888888888888877
Q ss_pred HHHHC
Q 009011 501 EMISK 505 (546)
Q Consensus 501 ~m~~~ 505 (546)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.5e-14 Score=127.93 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---C----HHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL---S----SQIFN 270 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~----~~~~~ 270 (546)
..+..+...+...|++++|++.|++..+.. .+..++..+..++...|++++|.+.+++.....|. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555556666666666666555543 44555555555555555555555555554331111 1 34556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 350 (546)
.+...+...|++++|...|++..... |+. ..+.+.|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666655532 221 22334455555555555555432 113334455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
++++|...++++.+.. +.+..++..+..+|.+.|++++|...+++..+.. +.+...|..+...+...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555443 2244555555555555555555555555555432 1234455555555555555555555555
Q ss_pred HHHH
Q 009011 431 KMEE 434 (546)
Q Consensus 431 ~m~~ 434 (546)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=6.3e-13 Score=134.10 Aligned_cols=365 Identities=12% Similarity=0.022 Sum_probs=243.9
Q ss_pred HHHhhcCChhHHHHHHHHHHh-------CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC------CCCCCHHH
Q 009011 133 TLRRFSNDLTPAFGFFTWAKT-------QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN------NGYVSLAT 199 (546)
Q Consensus 133 ~l~~~~~~~~~a~~~f~~~~~-------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~------~~~~~~~~ 199 (546)
.+....++.+.|+..|..+.. .........+|+.+..+|...|++++|...+++..+.. .......+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 333445678888888887652 11233446789999999999999999999998876521 02234567
Q ss_pred HHHHHHHHHhc--CChHHHHHHHHHhhhCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 200 MSTIMRRLVRG--GRYDDAVEAFRGMKKYGVEKDTRALSVLMDT---LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 200 ~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
+.....++... +++++|++.|++..+.. +.+...+..+..+ +...++.++|.+.+++.....|.+..++..+..
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 76666666554 46899999999998754 4455555555444 445677788888888877767778888877776
Q ss_pred HHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 009011 275 GWCKT----RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA- 349 (546)
Q Consensus 275 ~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~- 349 (546)
.+... |+.++|.+.+++....... +...+..+...|...|++++|...+++..+... -+..++..+..+|...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 66554 5778999999998876543 677889999999999999999999999988743 3566666666555322
Q ss_pred ------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HH
Q 009011 350 ------------------KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL--TY 409 (546)
Q Consensus 350 ------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~ 409 (546)
+..+.|...+++..+.+ +.+..++..+...|...|++++|.+.|++..+....+... .+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 23567788888877654 3455677888999999999999999999998765333221 12
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009011 410 NTMIS-SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 410 ~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 488 (546)
..+.. .....|+.++|+..|++..+. .|+...... ..+.+..+++...+.++. +..+|..+...|..
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKNGA-DSEALHVLAFLQEL 442 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 22222 235679999999999999885 455332222 223445566666665544 67899999999999
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHHH
Q 009011 489 SGKLELACSFFEEMISKG-IVPYHST 513 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g-~~p~~~~ 513 (546)
.|++++|.+.|++.++.| ..|+..+
T Consensus 443 ~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHCC---------------------
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 999999999999999865 2344433
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=4.2e-14 Score=126.58 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|...+++..+..+. +...|..+...|...|++++|+..|++..+.. .+...+..+..++...|++++|...|
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444444333221 23333333344444444444444444443333 23333334444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
++..+.. +.+...+..+...+.+.|++++|...++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4443332 1233333333344444444444444333
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=5.5e-14 Score=125.78 Aligned_cols=201 Identities=11% Similarity=0.012 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV 237 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (546)
+++...+..+...+.+.|++++|...|++..+ . .|.+...+..+...+.+.|++++|+..|++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-E-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 45677888999999999999999999999988 4 77889999999999999999999999999998764 567888999
Q ss_pred HHHHHHcc-----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 238 LMDTLVKG-----------NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306 (546)
Q Consensus 238 ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 306 (546)
+..++... |++++|...+++..+..|.+...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 99999999 999999999999988888899999999999999999999999999999887 58889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999874 33678888999999999999999999987654
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=5e-12 Score=117.41 Aligned_cols=225 Identities=15% Similarity=0.032 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
.+..++..+...+...|++++|...|++..+. -+..++..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34555666666666667777777777666663 244556666666666 677777777777666654 55566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 340 TIVMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNT 411 (546)
Q Consensus 340 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 411 (546)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666666 677777777777766654 55666666666666 677777777777776654 4555666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 412 MISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLV 483 (546)
Q Consensus 412 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 483 (546)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666665 677777777777776653 34556666666666 777777777777776653 255666666
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCC
Q 009011 484 RGLIE----SGKLELACSFFEEMISKG 506 (546)
Q Consensus 484 ~~~~~----~g~~~~A~~~~~~m~~~g 506 (546)
..|.+ .+++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66766 777777777777777665
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=9.7e-13 Score=120.53 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..|..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 34556666667777777777777776662 34456666666666777777777777776665542 3345555555555
Q ss_pred HHccCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 242 LVKGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
+...|++++|.+.++++.. ..+.+...+..+...+.+.|++++|...+++..+.... +...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 5555666666665555544 33334445555555555555555555555555443221 34444444455555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
|...++++.+.. +.+...+..+...+.+.|+.++|.++++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555444432 12333444444444444555555544444444
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=9.5e-13 Score=120.60 Aligned_cols=201 Identities=9% Similarity=-0.000 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++++....|.+..++..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4556666777777777777777777776543 445666666666777777777777777666655555666666666667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777766666522223 34455555566666666666666666665543 22445555555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655543 234455555555555566666666666555543
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.4e-12 Score=116.94 Aligned_cols=201 Identities=14% Similarity=0.058 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.+++.....|.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3444445555555555555555555554432 333445555555555555555555555555444444555555566666
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 277 CKT-RKVDDAQKAMKEMFQQGFSPD-VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354 (546)
Q Consensus 277 ~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 354 (546)
... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666555211222 4455555566666666666666666655542 2245555666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666665543113455555566666666666666666666654
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=5.2e-13 Score=123.89 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC--CHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK--DTRALSVL 238 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 238 (546)
+..+......+...|++++|.+.|+++.+ . .+.+...+..+...+...|++++|++.|++..+.+..+ ...++..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA-K-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH-T-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34455667777888888888888888877 3 44555577777778888888888888888877632111 23346777
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
..++...|++++|.+.+++.....|.+..++..+...|...|++++|...+++..+.... +...|..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 777777788888888887777666667777777777777777777777777777665322 4555555552333345777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCC-CCC------HHHHHHHHHHHHhcCCHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ---INEALKVYEKMKSDDC-LPD------TSFYSSLIFILSKAGRVK 388 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~-~~~------~~~~~~li~~~~~~g~~~ 388 (546)
+|.+.++++.+.. +.+...+..+..++...|+ +++|...+++..+... .|+ ..+|..+...|.+.|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 7777777776653 2235555556666666666 6666666666554310 122 135555666666666666
Q ss_pred HHHHHHHHHHHC
Q 009011 389 DANEIFEDMKKQ 400 (546)
Q Consensus 389 ~A~~~~~~~~~~ 400 (546)
+|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666553
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=9.1e-13 Score=127.78 Aligned_cols=197 Identities=6% Similarity=-0.024 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR-YDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
..+|..+..++.+.|++++|++.|+++.+ . .+.+..+|+.+...+...|+ +++|++.|++..+.. +.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE-L-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH-h-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45566666677777777777777777666 2 45566666666666666665 666766666666543 44555566666
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR-EKDFR 318 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~ 318 (546)
.++...|++++|...|+++....|.+..+|..+..++.+.|++++|+..++++++..+. +...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 66666666666666666655555555666666666666666666666666665554333 45555555555555 33334
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 009011 319 KV-----DDTLKEMQEKGCKPSVITYTIVMHALGKAK--QINEALKVYEKM 362 (546)
Q Consensus 319 ~a-----~~l~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~ 362 (546)
+| +..+++....... +...|..+...+.+.| ++++|.+.+.++
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 44 2444444433211 3334444444444433 244444444443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.5e-12 Score=116.67 Aligned_cols=200 Identities=10% Similarity=0.027 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009011 267 QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHAL 346 (546)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 346 (546)
.++..+...+...|++++|...++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444444444444444444444444433211 23344444444444444444444444444432 11334444444444
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 347 GKA-KQINEALKVYEKMKSDDCLP-DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN 424 (546)
Q Consensus 347 ~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 424 (546)
... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHH
Confidence 444 55555555554444411111 233444444445555555555555554444321 134444444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 425 ALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 425 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555544432112344444444444455555555555555443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.1e-13 Score=128.65 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=158.0
Q ss_pred HcCCChHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHH
Q 009011 172 GKSKKFCLMWELVKEMDELNN--GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVE 249 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 249 (546)
...|++++|.+.|+++.+... .+.+..++..+...+...|++++|++.|+++.+.. +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345778888888888776321 12346677777888888888888888888877653 456777777777788888888
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 250 HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+|.+.+++.....|.+..++..+...|.+.|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888877776666677777888888888888888888888777653 3333333344444566777777777766665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 330 KGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL---PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 330 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
.. +++...+. ++..+...++.++|.+.+.+..+.... .+..++..+...|.+.|++++|...|++..+.. |+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 42 22333333 555566666777777777766543211 014556666667777777777777777766543 321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222233445556666665554
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=2.7e-13 Score=123.42 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...|..+...+...|++++|...|+++.+ . .+.+...+..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-E-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHT-T-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344566667777777777777777777766 3 45566777777777777777777777777766543 34556666666
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
..+...|++++|.+.++++....+.+..++..+...+.+.|++++|...++++.+.... +...+..+...+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 66666667777766666665555556666666666666666666666666666554322 45555555666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666655542 224445555555555556666666665555544
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1e-12 Score=127.45 Aligned_cols=254 Identities=9% Similarity=-0.011 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhhcCCCCCHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS-VEHAYKVFLEFKDCIPLSSQIFNI 271 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~ 271 (546)
.+.....|+.+...+.+.|++++|++.|++..+.. +.+..+|..+..++...|+ +++|...|++.....|.+..+|+.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 33456677888888999999999999999998764 5678889999999999996 999999999999888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cC
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK-AK 350 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g 350 (546)
+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.... +...|+.+..++.+ .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987654 7889999999999999999999999999988544 78889999999998 66
Q ss_pred CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 009011 351 QINEA-----LKVYEKMKSDDCLPDTSFYSSLIFILSKAG--RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS--- 420 (546)
Q Consensus 351 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--- 420 (546)
..++| +..|++..+.. +-+...|+.+...+.+.| ++++|.+.+.++ +. ...+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 58888888765 447788988888898888 689999999888 43 2346778888888888864
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 009011 421 ------EEENALKLLQKM-EEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 421 ------~~~~A~~~~~~m-~~~~~~p~~~~~~~ll~~~~~ 453 (546)
..++|.++++++ .+.+ +.....|..+...+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 258999999998 6642 3334555555555543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.9e-11 Score=113.54 Aligned_cols=226 Identities=10% Similarity=-0.046 Sum_probs=199.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYS 375 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (546)
+..++..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56678888889999999999999999999843 56788888999999 999999999999999886 778888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 376 SLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 376 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+++++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999999 999999999999999874 77889999999999 999999999999999875 56777888
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 448 LKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 448 l~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
...|.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 999999999999999874 57888889999999 999999999999999886 3667778888
Q ss_pred HHHh----cChhhHHHHHHHHHHHHhhh
Q 009011 520 KLEK----KRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 520 ~~~~----~g~~~~a~~~~~~m~~~~~~ 543 (546)
.+.. .++.++|.+.++...+.+..
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8888 89999999999988776643
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=8.6e-13 Score=122.40 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=47.4
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChh
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD--VVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~ 318 (546)
.+...|++++|...|++..+..|.+...+..+...|...|++++|...+++..+.+..++ ...|..+...|...|+++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 333444444444444443333333333444444444444444444444444443211111 122333444444444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
+|.+.+++..+.... +...+..+...+...|++++|...+++..
T Consensus 92 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 444444444433211 22333344444444444444444444433
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3.5e-13 Score=122.66 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
....|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+++.....+.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455556666666677777777776666532 44555666666666666666666666666555455556666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666554322 44555555555666666666666666555442 22444555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555442 22344555555555555555555555555544
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.8e-13 Score=125.82 Aligned_cols=221 Identities=9% Similarity=-0.073 Sum_probs=118.6
Q ss_pred hcCChHHHHHHHHHhhhCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGV---EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
..|++++|++.|+++.+... +.+..++..+..++...|++++|.+.|++.....|.+..++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 34667777777777766421 113455666666666777777777777666655566666666666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
...|++..+.... +...+..+...|.+.|++++|...++++.+.. |+.......+..+...|++++|...+.+....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7776666654322 34556666666666666666666666665542 22222222333334445566666655554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP---NVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 366 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
. +++...+. ++..+...++.++|.+.+++..+..... +...+..+...+...|++++|...|+++.+
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 22222222 3444444555555555555544321000 023444444445555555555555555444
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.6e-12 Score=130.04 Aligned_cols=371 Identities=11% Similarity=0.020 Sum_probs=232.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKF---CLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG---- 211 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g---- 211 (546)
++.+.|+..|..+... | +...+..|..+|...|+. ++|.+.|++..+ . +...+..+...+...|
T Consensus 17 g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~---~--~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD---T--SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHH-T---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---C--CHHHHHHHHHHHHhCCCCCC
Confidence 4677888888887643 3 445566677777777877 889999888765 2 5566666666555555
Q ss_pred -ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 212 -RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEH---AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 212 -~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
++++|++.|++..+.|. ++ .+..|...|...+..+. +.+.+..... +.+...+..|...|...+.++++..
T Consensus 88 ~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred cCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHH
Confidence 67889999999888663 33 56666667766554433 3333333332 2235567778888888885544444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREK---DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA----KQINEALKVYE 360 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~ 360 (546)
....+.+.-...+...+..|...|.+.| +.++|++.|+...+.|.. +...+..+...|... +++++|.++|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333322211123347888888898999 899999999999988744 555556677777554 68999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 009011 361 KMKSDDCLPDTSFYSSLIFI-L--SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS-----EEENALKLLQKM 432 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m 432 (546)
+.. .| +...+..+... | ...+++++|.+.|++..+.| +...+..+...|. .| +.++|.++|++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 988 43 45566666665 3 46889999999999998876 6777777777776 45 999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 009011 433 EEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSFFEEMIS 504 (546)
Q Consensus 433 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 504 (546)
. .| +...+..+...|.. ..+.++|..+++...+.|. ......+...|.. ..+.++|..+|+...+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7 33 56677777766665 3489999999999988764 3455566666653 4589999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 505 KGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 505 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.|.. +.......+......++.+++.++.+...+.
T Consensus 387 ~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8832 1111111122222334566666666665543
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1e-12 Score=129.92 Aligned_cols=278 Identities=11% Similarity=-0.028 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCC
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT----RALSVLMDTLVKGNSVEHAYKVFLEFKDC------IPLS 265 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~ 265 (546)
....+..+...+...|++++|++.|+++.+.+ +.+. ..+..+..++...|++++|...+++.... .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34555666777788888888888888887653 2233 35666777777777777777777665431 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC-----------------hhHHHHH
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GF-SPDVVSYTCFIEHYCREKD-----------------FRKVDDT 323 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~-----------------~~~a~~l 323 (546)
..++..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 445666666677777777777776665442 10 0112344455555555555 4444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+++..+.. . ..+. .....++..+...|...|++++|...+++..+...
T Consensus 206 ~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 206 YQENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 44432210 0 0000 01123444455555555555555555554432110
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q 009011 403 -VPN----VLTYNTMISSACARSEEENALKLLQKMEEDLC--K---PDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND- 471 (546)
Q Consensus 403 -~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~- 471 (546)
..+ ...+..+...+...|++++|...+++..+... . ....++..+...+...|++++|...+++..+..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 001 12445555555566666666666655543210 0 012345555555666666666666666554411
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 472 ----VSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 472 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
......++..+...|...|++++|...+++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0011335556666666777777777777666543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.1e-12 Score=129.19 Aligned_cols=300 Identities=11% Similarity=-0.054 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS----LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV-EKDTRAL 235 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ 235 (546)
...+..+...+...|++++|...|+++.+.. +.+ ..++..+...+...|++++|+..|++..+... ..+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---- 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc----
Confidence 3344455555555555555555555555532 112 23445555555555555555555555432100 000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS-PD----VVSYTCFIEH 310 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~ 310 (546)
.+....++..+...|...|++++|...+++..+.... .+ ..++..+...
T Consensus 83 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 --------------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 0111233444455555555555555555544332000 01 2244455555
Q ss_pred HHhcCC--------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 311 YCREKD--------------------FRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 311 ~~~~g~--------------------~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
|...|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555544321 1111 1234555566666666776666666665432
Q ss_pred CC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 366 DC-LP----DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 366 ~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
.. .+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 01 1235566666677777777777777665432100 11 345566666777777777777777766542
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCh
Q 009011 436 LC-KPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKN----DV-SMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 436 ~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~ 492 (546)
.. ..+ ..++..+...|...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 10 011 345566666677777777777777765541 11 11234455555566555554
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=3.3e-12 Score=126.22 Aligned_cols=270 Identities=12% Similarity=-0.019 Sum_probs=177.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhhC----C-CCCCHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL----ATMSTIMRRLVRGGRYDDAVEAFRGMKKY----G-VEKDTR 233 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~ 233 (546)
.+..+...+...|++++|.+.|+++.+.. +.+. .++..+...|...|++++|++.|++..+. + .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34567778889999999999999998853 3333 57888999999999999999999987542 1 123346
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDC------IPLSSQIFNILIHGWCKTRK-----------------VDDAQKAMK 290 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 290 (546)
++..+...+...|++++|...+++.... .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6788888899999999999999876542 23345578899999999999 888888888
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 291 EMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPS----VITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 291 ~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
+..+. +..+ ...++..+...|...|++++|...+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 1111 234666677777788888888888777654310 011 1255566666777777777777776
Q ss_pred HHHhCCC---C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 361 KMKSDDC---L--PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV-----VPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 361 ~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
+..+... . ....++..+...|...|++++|...+++..+... .....++..+...|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6544210 0 1134555566666666666666666665543100 0012244445555555566666666555
Q ss_pred HHHH
Q 009011 431 KMEE 434 (546)
Q Consensus 431 ~m~~ 434 (546)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=8.9e-12 Score=124.52 Aligned_cols=188 Identities=12% Similarity=0.062 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHH
Q 009011 268 IFNILIHGWCKTR---KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE----KDFRKVDDTLKEMQEKGCKPSVITYT 340 (546)
Q Consensus 268 ~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (546)
.+..|...|.+.| +.++|.+.|++..+.|.. +...+..+...|... +++++|...|+... .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5555555555555 555555555555555432 333333444444333 45556666655555 32 223333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 341 IVMHA-L--GKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG-----RVKDANEIFEDMKKQGVVPNVLTYNTM 412 (546)
Q Consensus 341 ~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l 412 (546)
.+... + ...+++++|.++|++..+.| +...+..+..+|. .| ++++|.+.|++.. . -+...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 44433 2 23555666666666555544 3444444444444 33 5555655555544 2 244444444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 009011 413 ISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 413 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 471 (546)
...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.++|..+++...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444443 2255566666655555442 2223333333332 334555555555555544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=4.3e-12 Score=124.99 Aligned_cols=297 Identities=12% Similarity=-0.015 Sum_probs=206.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS----SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFSP-DV 301 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~ 301 (546)
....+......+...|++++|...|++.....|.+ ..++..+...|...|++++|...+++.... +..| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33444444555555566666666665554433333 245667777777777777777777765432 2111 24
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 009011 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPS----VITYTIVMHALGKAKQ--------------------INEAL 356 (546)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~ 356 (546)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5778888899999999999999998775310 012 4477788889999999 99999
Q ss_pred HHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 009011 357 KVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV-VPN----VLTYNTMISSACARSEEENAL 426 (546)
Q Consensus 357 ~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~ 426 (546)
..+.+..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876542 211 2245778888999999999999999998764210 122 237788888999999999999
Q ss_pred HHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHH
Q 009011 427 KLLQKMEEDLC-KPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS-MD----AGTYASLVRGLIESGKLELAC 496 (546)
Q Consensus 427 ~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~ 496 (546)
..+++..+... ..+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998865310 111 457788888999999999999999988762111 12 567888899999999999999
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcChh
Q 009011 497 SFFEEMISK----GIVP-YHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 497 ~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~ 527 (546)
..+++..+. +..+ ...++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999987654 2112 134556666677666654
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=1.5e-09 Score=112.42 Aligned_cols=414 Identities=10% Similarity=0.042 Sum_probs=276.6
Q ss_pred CCCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhhCCCCCCHH
Q 009011 124 SVSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKK---FCLMWELVKEMDELNNGYVSLA 198 (546)
Q Consensus 124 ~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~~a~~l~~~m~~~~~~~~~~~ 198 (546)
+-+...+..++..+. +....+..+|..+.. -++.+...|..-+..-.+.++ ++.+..+|+......+.+++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 467888888888764 356667778887774 366677888888888888888 9999999998887221137888
Q ss_pred HHHHHHHHHHhcCCh--------HHHHHHHHHhhh-CCC-CCC-HHHHHHHHHHHH---------ccCCHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRY--------DDAVEAFRGMKK-YGV-EKD-TRALSVLMDTLV---------KGNSVEHAYKVFLEF 258 (546)
Q Consensus 199 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~ 258 (546)
.|..-+....+.+.. +...++|+.... .|. .++ ...|...+.... ..++++.+..+|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 887777766665543 334477776543 455 443 456666665443 234567788888887
Q ss_pred hcCCCCC--HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHC--CCC---------------C-----C-
Q 009011 259 KDCIPLS--SQIFNILIHGWCKTRK-------------VDDAQKAMKEMFQQ--GFS---------------P-----D- 300 (546)
Q Consensus 259 ~~~~~~~--~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~~--g~~---------------~-----~- 300 (546)
.. +|.. ..+|......-...+. ++.|..++.++... ++. | +
T Consensus 221 L~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 221 LC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred Hh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 74 4433 2344333222222111 22344444443221 111 1 0
Q ss_pred --HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCC
Q 009011 301 --VVSYTCFIEHYCREK-------DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEAL-KVYEKMKSDDCLPD 370 (546)
Q Consensus 301 --~~~~~~li~~~~~~g-------~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 370 (546)
...|...+.---..+ ..+.+..+|++.... ++-+...|...+..+...|+.++|. ++|++.... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 133444444322222 123456678887766 3447778888888888889999996 999999874 4557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGV---------VPN------------VLTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
...+-..+...-+.|++++|.++|+.+.+... .|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77788888889999999999999999876310 132 236788888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 009011 430 QKMEEDLCKPDCETYAPLLKMCCRK-KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIV 508 (546)
Q Consensus 430 ~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (546)
.+..+.-.......|......-.+. ++.+.|..+|+...+.- .-+...|..++......|+.+.|..+|++.+.....
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9998761122334444333333344 45899999999999863 336777888999888999999999999999876532
Q ss_pred C--CHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 509 P--YHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 509 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
+ ....|...++.-...|+.+.+.++.+++.+.-++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 2 2356777777778889999999999999876554
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=7.7e-12 Score=119.44 Aligned_cols=278 Identities=14% Similarity=0.021 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD----TRALSVLMDTLVKGNSVEHAYKVFLEFKDC------IPLSSQI 268 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ 268 (546)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566667777777777777766542 222 244555666666666666666666554321 1112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC-------------hhHHHHHHHHHHHc
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGF-SPD----VVSYTCFIEHYCREKD-------------FRKVDDTLKEMQEK 330 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~-------------~~~a~~l~~~m~~~ 330 (546)
+..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ .+++.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 55555555555555555555555433200 001 1233344444444444 0000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 009011 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD----DC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV-VP 404 (546)
Q Consensus 331 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p 404 (546)
+++|.+.+++..+. +. .....++..+...|...|++++|...+++..+... .+
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 44444444333211 10 01123445555555666666666666655542100 00
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----
Q 009011 405 N----VLTYNTMISSACARSEEENALKLLQKMEEDLC-KPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKND---- 471 (546)
Q Consensus 405 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---- 471 (546)
+ ..++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 12455555566666666666666665543210 011 2345555555666666666666666554411
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 472 -VSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 472 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
......++..+...|.+.|++++|...+++..+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111335556666666677777777777666543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=2.1e-10 Score=108.43 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 009011 249 EHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV-SYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 249 ~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
++|..+|++... ..|.+...|..++..+.+.|++++|..+|++..+..+. +.. .|..+...+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445555544444 23344445555555555555555555555555543211 121 455555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 009011 327 MQEKGCKPSVITYTIVMHALG-KAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG-VVP 404 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p 404 (546)
..+... .+...|........ ..|++++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..+.. +.|
T Consensus 160 a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 554321 12223322222211 2466666666666655542 2345555666666666666666666666666542 222
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 405 --NVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 405 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
....|..++....+.|+.++|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566556666666666666666553
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=4.6e-12 Score=121.01 Aligned_cols=275 Identities=12% Similarity=-0.015 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CCH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS----LATMSTIMRRLVRGGRYDDAVEAFRGMKKY----GVE-KDT 232 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~ 232 (546)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|++.+++..+. +-. ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566788899999999999999998853 333 467889999999999999999999987542 111 225
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcC---CCC---CHHHHHHHHHHHHhcCC--------------------HHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKDC---IPL---SSQIFNILIHGWCKTRK--------------------VDDAQ 286 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~--------------------~~~a~ 286 (546)
.++..+...+...|++++|...+++.... .+. ...++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56788888999999999999999886542 111 13478889999999999 88888
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 287 KAMKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 287 ~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
..+++.... +..+ ....+..+...+...|++++|...+++..+... .++..
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------------- 220 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----------------------- 220 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-----------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-----------------------
Confidence 887776432 1111 123455555556666666666666655443200 00100
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 221 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 221 --------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp --------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 01123344444444445555554444443321000 01 233444455555555555555555554332
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 436 ----LCK-PDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 436 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+.. ....++..+...+...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 100 0123445555556666666666666665554
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=2.1e-10 Score=108.47 Aligned_cols=216 Identities=13% Similarity=0.090 Sum_probs=115.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 009011 250 HAYKVFLEFKDCIPLSSQIFNILIHGWC-------KTRKV-------DDAQKAMKEMFQQ-GFSPDVVSYTCFIEHYCRE 314 (546)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~ 314 (546)
+|..+|++.....|.+...|..++..+. +.|++ ++|..+|++.... .+ -+...|..+...+.+.
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhc
Confidence 4444444444444445555555554443 23553 5666666666652 22 1444566666666666
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 009011 315 KDFRKVDDTLKEMQEKGCKPS-VI-TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS-KAGRVKDAN 391 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 391 (546)
|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666653 222 22 55556666666666666666666666543 223333333222211 246666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009011 392 EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL-CKP--DCETYAPLLKMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 468 (546)
.+|+...+... -+...|..++..+.+.|+.++|..+|++..+.. ..| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666554321 245556666666666666666666666666542 233 24455555555566666666666666665
Q ss_pred hC
Q 009011 469 KN 470 (546)
Q Consensus 469 ~~ 470 (546)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=3.4e-11 Score=104.41 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+..+|..+...|.+.|++++|++.|++..+ . .|.+..++..+...|.+.|++++|++.++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-A-DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 344555566666666666666666666555 2 34455555555556666666666666555554432 33444444455
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
..+...++.+.+.+.+.+.....|.+...+..+...|.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555554444555555555555555555555555555555544322 34445555555555555555
Q ss_pred HHHHHHHHHH
Q 009011 320 VDDTLKEMQE 329 (546)
Q Consensus 320 a~~l~~~m~~ 329 (546)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=9.3e-11 Score=101.58 Aligned_cols=166 Identities=15% Similarity=0.096 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34555555556666666666666666555432 33445555555555555555555555555544444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
+...++++.|...+.+....... +...+..+...|.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555443222 34444444555555555555555555544432 12344444445555555555555
Q ss_pred HHHHHHHHh
Q 009011 356 LKVYEKMKS 364 (546)
Q Consensus 356 ~~~~~~~~~ 364 (546)
.+.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555554444
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=5.2e-11 Score=116.53 Aligned_cols=231 Identities=11% Similarity=-0.054 Sum_probs=130.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC-----CHHHHH
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KP-----SVITYT 340 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p-----~~~~~~ 340 (546)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+... .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777766543 1111 234566666667777777777777766554210 01 123566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ----GV-VPNVLTYN 410 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 410 (546)
.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666777777777777777666532 100 11235666677777777777777777766541 21 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQKMEED----LCKPDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMDAGTYASLV 483 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li 483 (546)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ .++|..++++.. ........+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 6677777777777777777766542 111111223445555556666 555555554441 1111233455566
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 009011 484 RGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~ 504 (546)
..|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666677777777777766553
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.2e-11 Score=122.51 Aligned_cols=212 Identities=12% Similarity=0.008 Sum_probs=119.8
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 212 RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV-EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
.++++++.+++..... +.+...+..+..++...|++ ++|.+.|++.....|.+..+|..+...|.+.|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556666666554432 34566666666666666666 677666666665555666666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 009011 291 EMFQQGFSPDVVSYTCFIEHYCRE---------KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA--------KQIN 353 (546)
Q Consensus 291 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~ 353 (546)
+..+.. |+...+..+...|... |++++|.+.+++..+... .+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666553 4455566666666666 666666666666555432 2445555555555555 5555
Q ss_pred HHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCL---PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
+|.+.|++..+.. + .+...|..+..+|...|++++|.+.|++..+... .+...+..+..++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555532 1 2455555555555555555555555555544321 13334444555555555555554433
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.3e-11 Score=122.40 Aligned_cols=214 Identities=14% Similarity=-0.010 Sum_probs=147.8
Q ss_pred ChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 176 KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRY-DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 176 ~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
.++++.+.+++... . .+.+...+..+...+...|++ ++|++.|++..+.. +.+..++..+..+|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~-~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLG-S-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHT-T-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-c-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46666666666554 2 455677777777777777777 77777777776653 44567777777777777777777777
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCh
Q 009011 255 FLEFKDCIPLSSQIFNILIHGWCKT---------RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE--------KDF 317 (546)
Q Consensus 255 ~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 317 (546)
|++.....| +...+..+...+... |++++|...+++..+.... +...|..+..+|... |++
T Consensus 160 ~~~al~~~p-~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 160 FSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhhCC-CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765433 367777777777777 7777777777777765433 566777777777777 777
Q ss_pred hHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCK--PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
++|.+.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777765320 266677777777777777777777777777654 3355666677777777777777665543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=3.4e-12 Score=120.72 Aligned_cols=240 Identities=11% Similarity=0.053 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 009011 263 PLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-------GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK----- 330 (546)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----- 330 (546)
|.+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334455666666666666666666666666542 11123445566666666667777776666666543
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 009011 331 -GC-KPSVITYTIVMHALGKAKQINEALKVYEKMKSD------DC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ- 400 (546)
Q Consensus 331 -g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 400 (546)
+. +....++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|.+.++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 112345666666777777777777777666543 11 123455666777777777777777777776543
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHH-------HHHHHHHhcCChHHH
Q 009011 401 -----GVVP-NVLTYNTMISSACARSEEENALKLLQKMEED-------LCKPDCETYA-------PLLKMCCRKKRMKVL 460 (546)
Q Consensus 401 -----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~-------~ll~~~~~~g~~~~a 460 (546)
+..| ...++..+...+...|++++|.+.++++.+. ...+...... .+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1111 2345666777777777777777777777642 1111111111 111122223333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 461 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
...++....... .+..++..+..+|.+.|++++|.+.|++..
T Consensus 264 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 264 GGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp C---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334433333211 134455556666666666666666666554
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=5.3e-11 Score=116.43 Aligned_cols=234 Identities=7% Similarity=-0.051 Sum_probs=177.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCHHHHH
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDC------LPDTSFYS 375 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~ 375 (546)
....+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677899999999999998764 1111 245788889999999999999999998865311 11245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 009011 376 SLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTMISSACARSEEENALKLLQKMEED----LC-KPDCETYA 445 (546)
Q Consensus 376 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 445 (546)
.+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999987642110 12 247788899999999999999999998762 22 33456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 009011 446 PLLKMCCRKKRMKVLNFLLTHMFKND----VSMDAGTYASLVRGLIESGK---LELACSFFEEMISKGIVPY-HSTYKML 517 (546)
Q Consensus 446 ~ll~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 517 (546)
.+...+.+.|++++|...+++..+.. -......+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 89999999999999999999887621 11122335667777888898 77777777766 33333 3456778
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 518 EEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 518 ~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
...|...|++++|.+.++...+...+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998776553
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.5e-12 Score=121.67 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC------
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDEL-------NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY------ 226 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 226 (546)
+..++..+...+...|++++|...|+++.+. . .+....++..+...+...|++++|++.|++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3556788888999999999999999888763 2 4445677888888899999999999988887643
Q ss_pred C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 009011 227 G-VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC--------IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-- 295 (546)
Q Consensus 227 ~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 295 (546)
+ .+....++..+...+...|++++|.+.+++.... .+....++..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1223455667777777777877777777665431 1233445666777777777777777777776553
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 296 ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 296 ----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234556666666677777777777666654
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.4e-09 Score=105.73 Aligned_cols=270 Identities=9% Similarity=-0.022 Sum_probs=187.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSS-----QIFNILIHGWCKTRKVDDAQKAMKEMFQQGF-SPD----VVSYT 305 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~ 305 (546)
......+...|++++|...+++.....+.+. .+++.+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444556678999999999988766444332 2467777888889999999999988765311 112 22356
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 009011 306 CFIEHYCREKDFRKVDDTLKEMQEK----GCK--P-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCL----PDTSFY 374 (546)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 374 (546)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777888899999999999887753 222 2 2345666778888999999999999888754321 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 009011 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYN-----TMISSACARSEEENALKLLQKMEEDLCKPD---CETYA 445 (546)
Q Consensus 375 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~ 445 (546)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788888899999999999998765311111 11222 233446788999999999988765432111 23456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 446 PLLKMCCRKKRMKVLNFLLTHMFK----NDVSMDA-GTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 446 ~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+...+...|++++|...++...+ .+..++. ..+..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677788889999999999988765 2222222 35666777888899999999999887653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1.4e-09 Score=105.76 Aligned_cols=301 Identities=11% Similarity=0.030 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhhcC--CCCC----HH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR----ALSVLMDTLVKGNSVEHAYKVFLEFKDC--IPLS----SQ 267 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~ 267 (546)
.........+...|++++|...+++........+.. ++..+...+...|++++|.+.+++.... ...+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455566778999999999999987754223332 4566677788899999999999886541 1112 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFS--P-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK----PSV 336 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~----p~~ 336 (546)
+++.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3677888899999999999999988653 222 2 2346667888899999999999999998865322 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HH
Q 009011 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDCLP--DTSFYS----SLIFILSKAGRVKDANEIFEDMKKQGVVPN---VL 407 (546)
Q Consensus 337 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~ 407 (546)
.++..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 567788888999999999999999887532111 122221 233457799999999999998875432211 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEED----LCKPDC-ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
.+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....... ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccH
Confidence 5667788899999999999999988543 222222 35666777888999999999999998763110 112
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC
Q 009011 483 VRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
+..+...| +....+++.+....
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHHcc--HHHHHHHHHHHhCC
Confidence 23344444 55666666666543
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2.5e-10 Score=98.49 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.+++.....|.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444445555555555555555554332 33444455555555555555555555555544444455555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 358 (546)
.|++++|.+.++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666665555554422 244555555555566666666666666555543 22445555566666666666666666
Q ss_pred HHHHHh
Q 009011 359 YEKMKS 364 (546)
Q Consensus 359 ~~~~~~ 364 (546)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=5.4e-10 Score=96.36 Aligned_cols=164 Identities=13% Similarity=0.089 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
..+..+...+...|++++|.+.++++....|.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34455555666667777777777666665566666677777777777777777777776665532 24556666666677
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777666553 2355566666666777777777777777666553 3355666666667777777777777
Q ss_pred HHHHHHH
Q 009011 393 IFEDMKK 399 (546)
Q Consensus 393 ~~~~~~~ 399 (546)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=8.6e-10 Score=107.56 Aligned_cols=228 Identities=10% Similarity=-0.025 Sum_probs=121.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHHHHHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKG-CKPS----VITYTIVMHALGKAKQINEALKVYEKMKSD----DC-L-PDTSFYSSLI 378 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~~~li 378 (546)
.+...|++++|...+++..+.. ..++ ..++..+...|...|+++.|...+.+..+. +. . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445566666666666655321 0111 234555556666666666666666655432 10 0 1134555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQ----GVVP-NVLTYNTMISSACARSEEENALKLLQKMEE-----DLCKPDCETYAPLL 448 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ll 448 (546)
.+|...|++++|.+.+++..+. +..+ ...+++.+...|...|++++|.+.+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 6666666666666666655431 1000 123455566666666677777666666654 22 22245566666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKND----VSMDAGTYASLVRGLIESGK---LELACSFFEEMISKGIVPY-HSTYKMLEEK 520 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 520 (546)
..+.+.|+.++|...+++..+.. -......+..+...+...|+ +.+|...+++. +..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 66667777777777776665521 11112334444444555566 55555555542 22222 2344456666
Q ss_pred HHhcChhhHHHHHHHHHHHHh
Q 009011 521 LEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 521 ~~~~g~~~~a~~~~~~m~~~~ 541 (546)
|...|+.++|.+.++...+..
T Consensus 346 y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 677777777777776665543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.3e-09 Score=106.33 Aligned_cols=231 Identities=11% Similarity=0.001 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--C---CC-CHHH
Q 009011 270 NILIHGWCKTRKVDDAQKAMKEMFQQGF-SPD----VVSYTCFIEHYCREKDFRKVDDTLKEMQEKG--C---KP-SVIT 338 (546)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~---~p-~~~~ 338 (546)
......+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3344556677888888888887765411 112 3466677777888888888888887766431 1 11 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKK-----QGVVPNVLT 408 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 408 (546)
+..+...|...|++++|.+.+.+..+. +.. ....++..+..+|...|++++|.+.+++..+ .... ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 667778888888888888888776542 111 1234667778888888888888888888775 3322 3566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCC-CHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEEDLC---KPD-CETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSM-DAGTYA 480 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~-~~~~~~ 480 (546)
+..+...+.+.|++++|...+++..+... .+. ...+..+...+...++ .++|..+++.. +..+ ....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 77788888888899999888888766421 122 2345555555666777 66666666652 2221 234566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 009011 481 SLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888899999999999988764
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=3.1e-10 Score=118.88 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+..+|+.|..+|.+.|++++|++.|++..+ . .+.+..+|+.+...|.+.|++++|++.|++..+.. +.+..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-l-~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE-V-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 467899999999999999999999999998 3 56788999999999999999999999999998764 56688999999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
.++.+.|++++|.+.|++..+..|.+...|+.+...|.+.|++++|++.|++..+.... +...|..+...|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999998878889999999999999999999999999999987544 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 009011 320 VDDTLKEMQE 329 (546)
Q Consensus 320 a~~l~~~m~~ 329 (546)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=7.7e-08 Score=99.63 Aligned_cols=393 Identities=8% Similarity=0.012 Sum_probs=267.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---hHHHH
Q 009011 141 LTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR---YDDAV 217 (546)
Q Consensus 141 ~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 217 (546)
+......|.....+ .+.|..+|..++..+.+.+.++.+..+|+.+.. . .|.+...|..-+..-.+.|. ++.+.
T Consensus 48 ~~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~-~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD-R-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34445444444432 357999999999999999999999999999998 4 77888999988999899999 99999
Q ss_pred HHHHHhhhCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHhhc--CC--CCCHHHHHHHHHHHHh------
Q 009011 218 EAFRGMKKYG-VEKDTRALSVLMDTLVKGNSV--------EHAYKVFLEFKD--CI--PLSSQIFNILIHGWCK------ 278 (546)
Q Consensus 218 ~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~--~~--~~~~~~~~~li~~~~~------ 278 (546)
++|++..... ..|++..|..-+....+.++. +.+.++|+.... +. +.+..+|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999998753 148888888777765555443 344577776554 33 4466789888876543
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHHHc--CCC-------
Q 009011 279 ---TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD-------------FRKVDDTLKEMQEK--GCK------- 333 (546)
Q Consensus 279 ---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------------~~~a~~l~~~m~~~--g~~------- 333 (546)
.++++.+..+|++.+......-..+|......--..+. ++.|...+.++... ++.
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 44678899999999864222122344333221111111 22334444443221 111
Q ss_pred --------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 334 --------P-----S---VITYTIVMHALGKAK-------QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390 (546)
Q Consensus 334 --------p-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 390 (546)
| + ...|...+.---..+ ..+.+..+|++..... +-+...|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 1 133444444332222 1234567788887753 45788888888888889999999
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHH
Q 009011 391 N-EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL---------CKPD------------CETYAPLL 448 (546)
Q Consensus 391 ~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll 448 (546)
. ++|+..... ++.+...|...+....+.|++++|.++|+++.+.. -.|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999863 34466667788888889999999999999987631 0132 23677778
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChh
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES-GKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
....+.|+.+.|..+|..+.+.........|...+..-.+. ++.+.|.++|+..++. +.-+...+...++.....|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88888999999999999998861222334454444333444 4599999999999886 334556666788888888999
Q ss_pred hHHHHHHHHHHHH
Q 009011 528 NAKERINKLLAHA 540 (546)
Q Consensus 528 ~~a~~~~~~m~~~ 540 (546)
+.|..+|+...+.
T Consensus 521 ~~AR~lferal~~ 533 (679)
T 4e6h_A 521 SQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999986543
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=5.1e-10 Score=117.22 Aligned_cols=169 Identities=11% Similarity=0.033 Sum_probs=148.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
.|.+..+|+.+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|.+.|++..+..|.+..+|+.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45567889999999999999999999999998764 55688899999999999999999999999888788889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
...|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999887543 6788999999999999999999999999887432 677889999999999999
Q ss_pred HHHHHHHHHHHh
Q 009011 353 NEALKVYEKMKS 364 (546)
Q Consensus 353 ~~a~~~~~~~~~ 364 (546)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=7.9e-09 Score=92.76 Aligned_cols=193 Identities=10% Similarity=-0.004 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009011 301 VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380 (546)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 380 (546)
...+......+...|++++|...|++..+....++...+..+..++...|++++|.+.+++..+.. +.+..++..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444555555555555555555544332344444445555555555555555555555443 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 009011 381 LSKAGRVKDANEIFEDMKKQGVVPNV-------LTYNTMISSACARSEEENALKLLQKMEEDLCKPD---CETYAPLLKM 450 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~ 450 (546)
|...|++++|...+++..+... .+. ..|..+...+...|++++|.+.+++..+. .|+ ...+..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 5555555555555555554321 122 23444555555666666666666666554 333 2344444444
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
+... +..+++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 4332 22333443333221 233333322 22345567777777777654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=6.6e-09 Score=93.26 Aligned_cols=132 Identities=8% Similarity=-0.008 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
..+......+.+.|++++|++.|++..+...+++...+..+..++...|++++|.+.+++.....|.+..++..+...|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 44444444444444444444444444443211344444444444444455555555554444444444444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPDV-------VSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
..|++++|...+++..+..+. +. ..|..+...+...|++++|.+.|++..+.
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 555555555555554443221 22 23444444455555555555555555443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=5.9e-10 Score=103.42 Aligned_cols=205 Identities=11% Similarity=0.072 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC-----
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY------GV-EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC----- 261 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 261 (546)
+....++..+...+...|++++|++.|++..+. +- +....++..+..++...|++++|.+.+.+....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 344666777777777777777777777776542 11 223456677777777778888877777665432
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 009011 262 ---IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ------GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK- 330 (546)
Q Consensus 262 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~- 330 (546)
.+....++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2334566778888888888888888888887654 1122 3456777888888888888888888877653
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 331 ------GCKPS-VITYTIVMHALGKAKQ------INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 331 ------g~~p~-~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
...+. ...+..+...+...+. +..+...+..... ..+....++..+...|...|++++|...+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 1223333333332222 2222222222111 11224567788888999999999999999887
Q ss_pred HH
Q 009011 398 KK 399 (546)
Q Consensus 398 ~~ 399 (546)
.+
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=5.3e-10 Score=103.74 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 009011 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEK------GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSD------D-C 367 (546)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~ 367 (546)
.++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|.+.+.+..+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444555555555555555444432 1111 2334455555555555555555555554432 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 009011 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ------GVVP-NVLTYNTMISSACARSEEENALKLLQKMEED----- 435 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 435 (546)
+....++..+...|...|++++|.+.+++..+. +..| ...++..+...+...|++++|..+++++.+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 123445555666666666666666666665542 1011 2345556666666677777777777666542
Q ss_pred --CCCCCH-HHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 436 --LCKPDC-ETYAPLLKMCCRKKRMK------VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 436 --~~~p~~-~~~~~ll~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
...+.. ..+..+...+...+... .+...++.... .......++..+...|...|++++|..++++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111221 12222222222222211 11111111111 1111344566777777788888888888877664
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=4.3e-09 Score=98.53 Aligned_cols=193 Identities=13% Similarity=0.065 Sum_probs=106.4
Q ss_pred HHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 009011 311 YCREKDFRKVDDTLKEMQEK----GCKPS-VITYTIVMHALGKAKQINEALKVYEKMKSDDC---LP--DTSFYSSLIFI 380 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~ 380 (546)
|...|++++|.+.|.+..+. |..++ ..+|+.+..+|.+.|++++|+..|++..+... .+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555444332 11111 23455555556666666666665555543210 01 13456666677
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 009011 381 LSKA-GRVKDANEIFEDMKKQGVVP-N----VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC------ETYAPLL 448 (546)
Q Consensus 381 ~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll 448 (546)
|... |++++|...|++..+..... + ..+++.+...+...|++++|+..|++..+....... .+|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 7774 77777777777665421100 1 245666777777778888888888777765322211 1455666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSM-D---AGTYASLVRGLI--ESGKLELACSFFEEMI 503 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 503 (546)
.++...|++++|...+++..+..+.. + ...+..++.++. ..+++++|+..|+.+.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 67777788888888887776633221 1 112344455553 3466777777776654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=9.9e-09 Score=83.01 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
|..+...+...|++++|.++|+++.+. .+.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 445555556666666666666665542 33345555555555556666666666666555432 334444455555555
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
..|++++|.+.++++....|.+..++..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554443444444555555555555555555555555443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=9.3e-08 Score=87.99 Aligned_cols=144 Identities=8% Similarity=0.077 Sum_probs=64.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 285 AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
|...|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 22333334444555555555555555555444332 1133444455555555555555555555554
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 364 SDDCLP-----DTSFYSSLIFIL--SKAG--RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 364 ~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 23 123333333331 1112 555555555555433 2332222223334555555555555555443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.6e-08 Score=81.73 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555666666677777777776665543 34455555566666666666666666666555445555556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
.|++++|.+.++++...... +...+..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665554321 344555555555555555555555555544
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=5.3e-07 Score=83.81 Aligned_cols=217 Identities=10% Similarity=-0.046 Sum_probs=117.6
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN--SVEHAYKVFLEFKDCIPLSSQIFNILIHGW----CKT---RKVDD 284 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~ 284 (546)
++|+++++.+...+ +-+..+++.--.++...| +++++.+.++.+....|.+..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34555555444432 223333444444444444 555555555555544455555554443333 333 45666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHH
Q 009011 285 AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR--KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ------INEAL 356 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~a~ 356 (546)
++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+.+.... |...|+.-...+.+.+. +++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 66666666655433 5555655555555556655 666666666665433 55555555455555444 66666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD-ANEIFEDMKKQG--VVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+.++.+.... +-|...|+.+-..+.+.|+... +.++..++.+.+ -..+...+..+...+.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666654 3466666666666666665332 444444443321 12355666666666666777777777777766
Q ss_pred H
Q 009011 434 E 434 (546)
Q Consensus 434 ~ 434 (546)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=2.6e-08 Score=91.47 Aligned_cols=211 Identities=11% Similarity=-0.005 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-C-CCHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV-E-KDTR 233 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-~~~~ 233 (546)
.+...+-.+...+.+.|++++|.+.|+++.+. .+.+ ..++..+...+.+.|++++|+..|++..+... . ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34566667777788888888888888888773 3333 67777888888888888888888888876421 1 2244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 234 ALSVLMDTLVK--------GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT 305 (546)
Q Consensus 234 ~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 305 (546)
++..+..++.. .|++++|...|+++....|.+......+.... .+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 56666667777 78888888888777765555544432221110 00000 011134
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC--H
Q 009011 306 CFIEHYCREKDFRKVDDTLKEMQEKGCKP--SVITYTIVMHALGKA----------KQINEALKVYEKMKSDDCLPD--T 371 (546)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~--~ 371 (546)
.+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+...... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 45556666677777777776666542211 233455555566544 666777777777665431111 2
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 009011 372 SFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~ 389 (546)
.....+-..+.+.+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 334444444444444443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=1.4e-07 Score=86.84 Aligned_cols=246 Identities=10% Similarity=0.085 Sum_probs=159.0
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
.--.|++..+..-...+.. ......-.-+.++|...|+.... ....|....+..+.. |...+ ++
T Consensus 23 ~fy~G~yq~~i~e~~~~~~--~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK--VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC--CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHHhhHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HH
Confidence 3446777777663333322 11223333455777777776531 112234334333333 33322 66
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
..+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776655 44566666788888888999999999988876653 236677888888899999999999999988764
Q ss_pred CCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009011 401 GVVP-----NVLTYNTMISSA--CARS--EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 401 ~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
.| +..+...++.++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+..
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35 245556666663 3334 888999999998665 4654444455558888999999999988765531
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 472 ---------VSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 472 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
-.-|..++..+|......|+ +|.++++++.+.. |+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp 287 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHA 287 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCCh
Confidence 02266677566666666776 7888888888654 5544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=4.1e-08 Score=90.13 Aligned_cols=210 Identities=14% Similarity=0.067 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC---CCHH
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP---LSSQ 267 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 267 (546)
+.+...+..+...+.+.|++++|++.|+++.+.. +.+ ...+..+..++...|++++|...|+++....| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456667777777888888888888888887643 223 56677777778888888888888877766433 2345
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 268 IFNILIHGWCK--------TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 268 ~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
.+..+..++.. .|++++|...|+++.+..+. +......+. .+..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 56677777777 77888888888877765322 111111111 11111100 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCH-
Q 009011 340 TIVMHALGKAKQINEALKVYEKMKSDDCL--PDTSFYSSLIFILSKA----------GRVKDANEIFEDMKKQGVVPNV- 406 (546)
Q Consensus 340 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~- 406 (546)
..+...|.+.|++++|...|+++.+.... .....+..+..+|... |++++|...|+++.+.. |+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCCh
Confidence 56788899999999999999999876422 1345777888888866 89999999999998754 432
Q ss_pred ---HHHHHHHHHHHhcCCHHHH
Q 009011 407 ---LTYNTMISSACARSEEENA 425 (546)
Q Consensus 407 ---~~~~~li~~~~~~g~~~~A 425 (546)
.....+-..+...++.+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555555555443
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=3.9e-08 Score=86.77 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=33.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHY 311 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 311 (546)
+..++.+.|++++|...|++.....|.+...+..+...+...|++++|...|++..+..+. +..+|..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 4444444455555554444444444444444444555555555555555555544443222 334444444443
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=7.4e-07 Score=82.80 Aligned_cols=229 Identities=5% Similarity=-0.016 Sum_probs=177.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG--RYDDAVEAFRGMKKYGVEKDTRALSVLMDTL- 242 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~- 242 (546)
.+.....+....++|+++++.+.. - .|....+|+.--..+...| ++++++++++.+.... +.+..+++.-..++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~-~-nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGIN-E-LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH-H-CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHH
Confidence 333444455556789999999888 3 6777888888888888888 9999999999998764 44555555444444
Q ss_pred ---Hcc---CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 243 ---VKG---NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD--DAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314 (546)
Q Consensus 243 ---~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 314 (546)
... ++++++.++++.+....|.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 444 78899999999998888899999998888888888888 999999999987665 788888777777777
Q ss_pred CC------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 009011 315 KD------FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN-EALKVYEKMKSDD--CLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 315 g~------~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 385 (546)
|. ++++++.++.+...... |...|+-.-..+.+.|+.. .+..+..++.+.+ -+.+...+..+...|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 88899999998887544 7888888888888887743 3555666655432 1347788889999999999
Q ss_pred CHHHHHHHHHHHHH
Q 009011 386 RVKDANEIFEDMKK 399 (546)
Q Consensus 386 ~~~~A~~~~~~~~~ 399 (546)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999886
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=5.1e-08 Score=86.03 Aligned_cols=171 Identities=9% Similarity=-0.014 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHhhh
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST----------------IMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
..+-.....+...|++++|...|++..+. .+.+...|.. +...+.+.|++++|+..|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445566778899999999999999883 4555667777 89999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 009011 226 YGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK--VDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 226 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
.. +.+...+..+..++...|++++|...|++.....|.+..++..+...|...|+ ...+...++.... ..|....
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 64 66788999999999999999999999999988888899999999998876654 3445555555432 2222333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
+.....++...|++++|...|++..+. .|+....
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 444455566678888888888887764 4555433
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=2.8e-08 Score=92.94 Aligned_cols=205 Identities=10% Similarity=0.050 Sum_probs=106.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELN---NGYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
......|...|++++|.+.|++..... ..+. ...+|+.+...|.+.|++++|+..|++..+.
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-------------- 106 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-------------- 106 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------
Confidence 334455666677777776666554421 0111 1345666666666666666666666655431
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhc
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQGFSP-D----VVSYTCFIEHYCRE 314 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~ 314 (546)
+...|+...+ ..+++.+...|... |++++|...|++..+..... + ..++..+...|.+.
T Consensus 107 -~~~~g~~~~~--------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 107 -FTHRGQFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp -HHHTTCHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHcCCHHHH--------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 0111111111 23455556666664 66666666666654421100 1 23466666667777
Q ss_pred CChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHH--
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSV------ITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PD---TSFYSSLIFILS-- 382 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~-- 382 (546)
|++++|...|++..+....... ..+..+..++...|++++|...|++..+.... ++ ...+..++..|.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 7777777777766654322111 14555666666777777777777766553211 01 112333444443
Q ss_pred hcCCHHHHHHHHHHHH
Q 009011 383 KAGRVKDANEIFEDMK 398 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~ 398 (546)
..+++++|...|+.+.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 3455666766666554
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.8e-08 Score=86.39 Aligned_cols=163 Identities=9% Similarity=0.027 Sum_probs=114.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT- 241 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~- 241 (546)
.+..+...+.+.|++++|...|++..+ . .+.+...+..+...+.+.|++++|+..|++..+.. |+......+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD-E-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH-H-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 345566778888888888888888766 3 56677888888888888888888888888876543 354433322211
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a 320 (546)
+...+....|...+++.....|.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1122222345667777666667778888888888888888888888888887765432 345677777888888888888
Q ss_pred HHHHHHHHH
Q 009011 321 DDTLKEMQE 329 (546)
Q Consensus 321 ~~l~~~m~~ 329 (546)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.5e-08 Score=106.45 Aligned_cols=173 Identities=8% Similarity=-0.030 Sum_probs=105.4
Q ss_pred HhcCChHHHHHHHHHhh--------hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 208 VRGGRYDDAVEAFRGMK--------KYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 208 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|.+.|++..+..|.+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666665 221 344555666666666666666666666666655566666677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|...|++..+.... +...|..+..+|.+.|++++ .+.|++..+.+.. +...+..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777776665332 45566666666777777777 7777766665322 5556666667777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g 385 (546)
++..+.+ +.+...+..+..++...+
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred HhhcccC-cccHHHHHHHHHHHHccC
Confidence 7666543 223445555555554433
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=1e-05 Score=81.15 Aligned_cols=354 Identities=8% Similarity=-0.067 Sum_probs=196.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhh-CCC-CCCHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR-YDDAVEAFRGMKK-YGV-EKDTRALSVLM 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~-~~~-~~~~~~~~~ll 239 (546)
+|...+..+-. |+++.+..+|+.... ..|+...|..-+....+.+. .+....+|+.... .|. ..+...|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34444444433 566666666666665 33466666666655555542 2344555555543 232 23445555555
Q ss_pred HHHH----ccCCHHHHHHHHHHhhcCCCCC-H-HHHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCCC
Q 009011 240 DTLV----KGNSVEHAYKVFLEFKDCIPLS-S-QIFNILIHGWC-------------KTRKVDDAQKAMKEMFQQGFSPD 300 (546)
Q Consensus 240 ~~~~----~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~~~ 300 (546)
..+. ..++++.+.++|++... .|.. . ..|......-. ..+.+..|..+++.+...-...+
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 4432 13455666666666554 2222 1 11211111100 01123334444444332100013
Q ss_pred HHHHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 009011 301 VVSYTCFIEHYCREK--D-----FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 301 ~~~~~~li~~~~~~g--~-----~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 373 (546)
...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.++|++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 345555444322211 1 345677888888753 446777888888888899999999999998887 334333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQG---------VVP---NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 441 (546)
+. .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|++. +.. ..+.
T Consensus 249 ~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 249 SL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp HH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred HH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 32 22222222222 22222110 001 1245666677666778899999999998 321 2344
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 442 ETYAPLLKMCCR-KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 442 ~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
..|......-.. .++.+.|..+|+...+.-.. +...+...++...+.|+.+.|..+|+.+. .....|...++.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~f 393 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 445432222222 34699999999998885332 45567778888888999999999999972 246677777776
Q ss_pred HHhcChhhHHHHHHHHHHH
Q 009011 521 LEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 521 ~~~~g~~~~a~~~~~~m~~ 539 (546)
-...|+.+.+.++++...+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6777999999887766653
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.7e-08 Score=106.02 Aligned_cols=182 Identities=9% Similarity=-0.023 Sum_probs=140.4
Q ss_pred cCCHHHHHHHHHHhh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 245 GNSVEHAYKVFLEFK--------DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
.|+.++|.+.+++.. ...|.+...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|...|+
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGD 482 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCC
Confidence 367888888888877 566778888999999999999999999999998876443 67788888888999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
+++|.+.|++..+.... +...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..+|.+.|++++|.+.|++
T Consensus 483 ~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 483 YDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999998877432 56678888888999999999 99999988765 44677888888999999999999999998
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 009011 397 MKKQGVVPN-VLTYNTMISSACARSE--------EENALKLLQKM 432 (546)
Q Consensus 397 ~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 432 (546)
..+.. |+ ...+..+..++...++ +++|.+.+..+
T Consensus 560 al~l~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 560 VPPTS--RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp SCTTS--TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred hcccC--cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 87643 44 4566666666655443 45555555444
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=1.9e-07 Score=83.41 Aligned_cols=189 Identities=10% Similarity=0.001 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CCH-HHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-KDT-RALS 236 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~-~~~~ 236 (546)
+...+..+...+.+.|++++|.+.|+++.+..+..+ ....+..+...+.+.|++++|++.|+++.+.... +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677888899999999999999987542222 2467888899999999999999999998765311 111 2344
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 237 VLMDTLVK------------------GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 237 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.+..++.. .|+.++|...|+++....|.+...+.+...... +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH------
Confidence 44444433 466777777777777666666544433221100 00000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP--SVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
......+...|.+.|++++|...|+.+.+..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345667888899999999999988763221 12467778889999999999999999888764
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.1e-08 Score=84.99 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=50.8
Q ss_pred HHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHH
Q 009011 171 LGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEH 250 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 250 (546)
+...|++++|+..++.... . .+.+...+..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~-~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP-S-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC-S-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc-c-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3344445555555544433 1 22223333344445555555555555555544432 3344444444444444555555
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
|...|++..+..|.+..++..+...|.+.|+.++
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 5555444444444444444444444444444443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=3.7e-08 Score=84.32 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=78.3
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH-YCREKDFR 318 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~ 318 (546)
..+...|++++|...|++.....|.+...+..+...+...|++++|...+++...... +...+..+... +...++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccc
Confidence 3344445555555555444444444455555555555555555555555555443321 22222111111 11222233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP-DTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4555566555542 1245556666666666666666666666666554221 2445666666666666666666666655
Q ss_pred H
Q 009011 398 K 398 (546)
Q Consensus 398 ~ 398 (546)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=4.7e-07 Score=80.03 Aligned_cols=175 Identities=10% Similarity=-0.008 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG----RVKDANEIFE 395 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 395 (546)
|.+.|++..+.| +...+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444443 34444445555555555555555555555543 33444444444444 4 5555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 009011 396 DMKKQGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCK-PDCETYAPLLKMCCR----KKRMKVLNFLLTH 466 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~ 466 (546)
+..+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .++.++|..++++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555432 34444444444444 45556666666555554310 013445555555555 5556666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHCC
Q 009011 467 MFKNDVSMDAGTYASLVRGLIES-G-----KLELACSFFEEMISKG 506 (546)
Q Consensus 467 m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 506 (546)
..+.+ .+...+..+...|... | ++++|..+|++..+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55541 1233444455555432 2 5666666666666555
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=8.8e-08 Score=89.21 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
.+...+..+...+.+.|++++|...|++..+ . .+.+...+..+...+.+.|++++|++.|++.... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ-L-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-h-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455667788888888999999999988887 3 5667888888888888999999999998888654 3454433322
Q ss_pred -HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 009011 239 -MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKD 316 (546)
Q Consensus 239 -l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~ 316 (546)
...+...++.+.|...+++.....|.+...+..+...+...|++++|...|.++.+..+.. +...+..+...|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2235566777778888888777778888888888888888888888888888888764332 25677888888888888
Q ss_pred hhHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQ 328 (546)
Q Consensus 317 ~~~a~~l~~~m~ 328 (546)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888777654
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=1.1e-07 Score=97.99 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...|..+...+.+.|++++|.+.|++..+ . .+.+...+..+...|.+.|++++|++.|++..+.. +.+...+..+.
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 98 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLA-L-HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLG 98 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-T-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 344555555555555555555555555554 2 33445555555555555555555555555554432 33344555555
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT---RKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 295 (546)
.++...|+.++|.+.+++..+..|.+...+..+...+... |+.++|.+.+++..+.
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555555555555555555444444455555555555555 5555555555555444
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=2.6e-08 Score=82.77 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
.+...|.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|...|++..
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3333344444444444444433333221 23333333333333333333333333333
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=6.4e-07 Score=79.18 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHHHH
Q 009011 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK----DFRKVDDTLKEMQEKGCKPSVITYT 340 (546)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (546)
++..+..|...|...+++++|...|++..+.| +...+..|-..|.. + ++++|.++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555555555555555555442 33444444444444 3 4555555555554443 333444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 009011 341 IVMHALGK----AKQINEALKVYEKMKSDDCL-PDTSFYSSLIFILSK----AGRVKDANEIFEDMKK 399 (546)
Q Consensus 341 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 399 (546)
.+...|.. .+++++|.++|++..+.+.. .+...+..|..+|.. .+++++|...|++..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44444443 44555555555554444310 013344444444444 4445555555554444
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=4.5e-07 Score=81.01 Aligned_cols=187 Identities=7% Similarity=-0.033 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHH---HHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-K-DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ---IFN 270 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 270 (546)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+++.+..|.+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778889999999999999999874311 1 1457778888999999999999999998776555543 455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009011 271 ILIHGWCK------------------TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332 (546)
Q Consensus 271 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (546)
.+..++.+ .|+.++|...|+++.+..+. +...+..... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHH----------HHHHHHHHH----
Confidence 55555544 45677777777777665322 1112211110 000001100
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP--DTSFYSSLIFILSKAGRVKDANEIFEDMKKQG 401 (546)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 401 (546)
.....+...+.+.|++++|...|+++.+..... ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112346678899999999999999998864221 13568889999999999999999999998764
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=1.5e-07 Score=87.60 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 009011 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT-CFIEH 310 (546)
Q Consensus 232 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~ 310 (546)
...+..+...+...|+.++|...|++.....|.+...+..+...+.+.|++++|...++++.... |+..... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 33444444555555666666666655555555556666666666666666666666666554432 2322211 12223
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 009011 311 YCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 389 (546)
+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+.... .+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 445555566666666655543 224555566666666666666666666666654311 124555666666666666666
Q ss_pred HHHHHHHH
Q 009011 390 ANEIFEDM 397 (546)
Q Consensus 390 A~~~~~~~ 397 (546)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555544
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=1.3e-07 Score=97.45 Aligned_cols=154 Identities=10% Similarity=-0.021 Sum_probs=102.9
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYK 253 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 253 (546)
.|++++|.+.|++..+ . .+.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR-H-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4677788888887776 3 55667778888888888888888888888877653 4557777777778888888888888
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 009011 254 VFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE---KDFRKVDDTLKEMQEK 330 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~ 330 (546)
.+++..+..|.+...+..+...|.+.|++++|.+.+++..+.... +...+..+...+... |++++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 887777666777777888888888888888888888887766432 566777777777777 7788888888777766
Q ss_pred C
Q 009011 331 G 331 (546)
Q Consensus 331 g 331 (546)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1e-07 Score=89.77 Aligned_cols=159 Identities=10% Similarity=0.027 Sum_probs=73.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHH
Q 009011 309 EHYCREKDFRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDD---CLPD--TSFYSSLI 378 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~li 378 (546)
..|...|++++|...+.+..+. +..+ -..+|..+...|.+.|++++|...|++..+.. -.+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666555432 1000 12345555555556666666666665544321 0111 23444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVP-N----VLTYNTMISSACARSEEENALKLLQKMEED----LCKPD-CETYAPLL 448 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll 448 (546)
..|.. |++++|...|++..+..... + ..+++.+...+...|++++|+..|++..+. +..+. ..++..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 55666655555544311000 0 234444555555555555555555555432 11010 11333333
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 009011 449 KMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~ 468 (546)
.++...|++++|...+++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555554
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=2.5e-07 Score=87.16 Aligned_cols=223 Identities=10% Similarity=0.080 Sum_probs=154.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK-GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKA 288 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (546)
.|++++|.+++++..+.. +. .+.+ .++++.|...|... ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 467888888888776531 11 0222 57777777776554 5678889999999999
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 289 MKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 289 ~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 358 (546)
|.+..+. |-.. -..+|+.+...|.+.|++++|...+++..+. |-.. -..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9987653 1111 1457888889999999999999999987754 2111 13567778888888 999999999
Q ss_pred HHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 009011 359 YEKMKSDDC---LP--DTSFYSSLIFILSKAGRVKDANEIFEDMKKQ----GVVPN-VLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 359 ~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
|++..+... .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998875421 11 1467888899999999999999999988753 21111 22566667777888999999999
Q ss_pred HHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHH
Q 009011 429 LQKMEEDLCKPDC------ETYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 429 ~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~ 462 (546)
|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 218 ~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99988 4 3321 1233444444 4566555444
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=3e-05 Score=77.77 Aligned_cols=344 Identities=8% Similarity=-0.005 Sum_probs=188.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHH----hcCCh
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKK-FCLMWELVKEMDELN-NGYVSLATMSTIMRRLV----RGGRY 213 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~----~~g~~ 213 (546)
..+.+..+|..+.. ..|+...|..-+....+.+. .+.+..+|+.....- ..+.+...|...+..+. .+|+.
T Consensus 29 ~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 29 DYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp CHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 34445555555542 23466666555555555442 234455555554431 12345555555554432 23455
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-------------ccCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhc
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLV-------------KGNSVEHAYKVFLEFKDCIP-LSSQIFNILIHGWCKT 279 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 279 (546)
+.+..+|++........-...|......-. ..+.+..|..+++.+....+ .+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 566666666654211111111111111000 00122233333433322111 2344565555543322
Q ss_pred C--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 280 R--K-----VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 280 g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
+ - .+.+..+|+++....+ -+...|...+..+.+.|+.++|..++++.... +.+...+. .|+...+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 1 3446678888777543 35677777777788888888998888888877 33332222 22222111
Q ss_pred HHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-c
Q 009011 353 NEALKVYEKMKSDD---------C---LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA-R 419 (546)
Q Consensus 353 ~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~ 419 (546)
++. ++.+.+.- . .....+|...+..+.+.+.++.|..+|+.. +. ...+...|......-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 221 22222110 0 012345666777777788899999999998 32 12344445432222222 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009011 420 SEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFF 499 (546)
Q Consensus 420 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 499 (546)
++.+.|..+|+...+.- +-+...+...+....+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46999999999988753 2234556667777788899999999999973 25788888888888889999999988
Q ss_pred HHHHH
Q 009011 500 EEMIS 504 (546)
Q Consensus 500 ~~m~~ 504 (546)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=7e-06 Score=77.08 Aligned_cols=150 Identities=8% Similarity=-0.054 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG-RYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
.+++.+-..+.+.+..++|+++++.+.. . .+.+..+|+.--..+...| .+++++++++.+.... +.+..+++.-.-
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~-~-nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~w 131 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVR-M-NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-h-CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3455555555566666788888888877 3 5666777777766666677 4777777777777654 555666665555
Q ss_pred HHHcc-C-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 241 TLVKG-N-SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD--------DAQKAMKEMFQQGFSPDVVSYTCFIEH 310 (546)
Q Consensus 241 ~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~ 310 (546)
++... + +.+++.++++.+.+..|.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~l 210 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYL 210 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 55554 4 6667777777776666666666666555555444444 555555555554333 44455544444
Q ss_pred HHhcC
Q 009011 311 YCREK 315 (546)
Q Consensus 311 ~~~~g 315 (546)
+.+.+
T Consensus 211 L~~l~ 215 (349)
T 3q7a_A 211 RVSRP 215 (349)
T ss_dssp HTTST
T ss_pred HHhcc
Confidence 44443
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.4e-05 Score=75.16 Aligned_cols=166 Identities=8% Similarity=-0.062 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C-ChHHHHH
Q 009011 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSK-KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRG-G-RYDDAVE 218 (546)
Q Consensus 142 ~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~ 218 (546)
..|+..+..+... .+-+..+|+..-.++...| .+++++++++.+.. . .+.+..+|+.-...+.+. + +++++++
T Consensus 71 e~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~-nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 71 ERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-Q-NLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-T-TCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3455555554421 1223334555555555555 35555555555554 3 445555555544444444 4 5555555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------HH
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVE--------HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK-------VD 283 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~ 283 (546)
+++++.+.. +.+..+++.-.-++.+.|..+ ++.+.++++.+..+.|...|+.....+.+.+. ++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 555555432 344444443333333333333 45555555554455555555555555555443 34
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
++++.++++....+. |...|+.+-..+.+
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 444444444443332 44444444333333
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=5.6e-06 Score=77.19 Aligned_cols=127 Identities=6% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCC---CCC--HH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL------ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV---EKD--TR 233 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~ 233 (546)
...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|++.|++..+... .+. ..
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555666666666666666555522 1111 1223334444555566666666655543211 111 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhh---cCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFK---DCIPLS----SQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
+++.+...|...|++++|...+++.. ...+.+ ..+++.+...|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555555555555555555554443 112211 1344455555555555555555555443
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=8.1e-06 Score=76.07 Aligned_cols=161 Identities=8% Similarity=-0.028 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 009011 343 MHALGKAKQINEALKVYEKMKSDDC-LPDT----SFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTM 412 (546)
Q Consensus 343 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 412 (546)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777665421 1221 12334555556666777777777777653211 12 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHH
Q 009011 413 ISSACARSEEENALKLLQKMEED-----LCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFK----NDVSMD-AGTYAS 481 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~ 481 (546)
...|...|++++|..+++++.+. +..+. ..+|..+...|.+.|++++|...+++..+ .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776631 11111 23566677777777777777777776654 221222 566777
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHH
Q 009011 482 LVRGLIESGK-LELACSFFEEMI 503 (546)
Q Consensus 482 li~~~~~~g~-~~~A~~~~~~m~ 503 (546)
+..++.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777777774 577777777665
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=4.8e-06 Score=77.61 Aligned_cols=91 Identities=9% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----HHHHHHH
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSL----ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-KD----TRALSVL 238 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~l 238 (546)
+..+...|++++|.+.+++........++. ..+..+...+...|++++|++.|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445555566666666666555422111111 12223344444445555555555555442111 11 1234444
Q ss_pred HHHHHccCCHHHHHHHHHHh
Q 009011 239 MDTLVKGNSVEHAYKVFLEF 258 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~ 258 (546)
..+|...|++++|...|++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44444555555555444443
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=2.5e-06 Score=75.20 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 417 (546)
.+..+...+...|++++|...|++.. .|+..++..+...|.+.|++++|.+.+++..+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667777888888888887663 4567777788888888888888888888777643 235667777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009011 418 ARSEEENALKLLQKMEEDLCKPDC----------------ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV 472 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 472 (546)
..|++++|.+.+++..+.. +.+. ..+..+..++...|++++|...++...+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888877653 1122 5566667777777777777777777776543
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=2e-06 Score=75.79 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
+..+...+...|++++|++.|++.. .|+..++..+..++...|++++|.+.+++.....|.+...+..+...|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3344556667777777777777653 456667777777777777777777777776665566677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 280 RKVDDAQKAMKEMFQQGFS--------------P-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
|++++|...|++..+.... | ....+..+..+|.+.|++++|...++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777664321 1 1255666667777777777777777776655
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1.6e-06 Score=72.90 Aligned_cols=127 Identities=7% Similarity=-0.033 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|.+.+++.....|.+...+..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555566666666665554432 33455555555555555555555555555554445555555566666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTC--FIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~a~~l~~~m 327 (546)
.|++++|...+++..+.... +...+.. +...+.+.|++++|.+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666665554322 2223322 222244455555555555443
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=1.6e-06 Score=72.78 Aligned_cols=130 Identities=11% Similarity=-0.012 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...+...|++++|.+.|++..+. .+.+..++..+...+...|++++|++.|++..+.. +.+..++..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45677888999999999999999999883 56678999999999999999999999999998764 5678889999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI--HGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+...|++++|.+.+++.....|.+...+..+. ..+.+.|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998877777777774444 447788999999999887653
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2e-06 Score=68.01 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...+...|++++|.+.|+++.+. .+.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34445555555555555555555555542 23344455555555555555555555555554432 2334444444444
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
+...|++++|...++++....|.+...+..+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 445555555555554444433334444433333
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=2.8e-07 Score=85.48 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.....|.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666677777777777777777776542 34666677777777777777777777777766666677777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
|...|++++|...|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776553
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=1.3e-06 Score=69.88 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
+......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++..+..|.+...|..+..++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3333444444444444444444443322 233344444444444444444444444444333334444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQ 294 (546)
Q Consensus 280 g~~~~a~~~~~~m~~ 294 (546)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=2.9e-06 Score=67.02 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++....|.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4455666666666677777777766665542 344555556666666666666666666665554455555566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009011 277 CKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~ 295 (546)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666665554
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=1.8e-06 Score=68.98 Aligned_cols=111 Identities=9% Similarity=-0.041 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...|.+.|++++|++.|++..+ . .+.+..+|..+...|.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK-R-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567788899999999999999999988 3 67789999999999999999999999999998764 6678899999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...|++++|.+.|++..+..|.+..++..|..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999988778888777766543
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=1.1e-06 Score=72.72 Aligned_cols=123 Identities=9% Similarity=-0.008 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
+++.+.+++...+.+..+.+ - .+.+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~--------l-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA--------I-PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC--------S-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhC--------C-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34555555555554443321 1 33445666777777777788888888887777653 55667777777777
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
...|++++|...|++.....|.+...|..+..+|.+.|++++|...|++..+.
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777666677777777777777777777777777777765
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=2e-06 Score=69.11 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++.....|.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34445555555555555555555555554432 23444445555555555555555555555444444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+.|++++|...|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=1.7e-06 Score=69.41 Aligned_cols=122 Identities=7% Similarity=-0.106 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 009011 157 YMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS 236 (546)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 236 (546)
...+...+..+...+.+.|++++|.+.|++..+ . .+.+...+..+...+...|++++|++.|++..+.. +.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-R-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345667888999999999999999999999987 3 56678999999999999999999999999998754 55788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 009011 237 VLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK 281 (546)
Q Consensus 237 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (546)
.+..++...|++++|.+.+++.....|.+...+..+...+.+.|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999877666677778888777776553
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=3.6e-06 Score=67.18 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.++......|.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3344444555555555555555555554432 233444444455555555555555555544443444455555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
...|++++|...+++..+.... +...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 5555555555555555444221 33444444444444443
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=1.8e-05 Score=73.68 Aligned_cols=164 Identities=10% Similarity=0.015 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHhhcCC----CCC-
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT------RALSVLMDTLVKGNSVEHAYKVFLEFKDCI----PLS- 265 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~- 265 (546)
...+...+..+...|++++|++.+++..+... ... ..+..+...+...|++++|...+++..... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34455567788889999999999988776432 222 112334444555666666666665554311 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC
Q 009011 266 -SQIFNILIHGWCKTRKVDDAQKAMKEMFQ---Q-GFSP--DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG----CKP 334 (546)
Q Consensus 266 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p 334 (546)
..+++.+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 33556666666666666666666665542 1 1001 11344555555555555555555555544321 000
Q ss_pred -CHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 009011 335 -SVITYTIVMHALGKAKQINEA-LKVYEK 361 (546)
Q Consensus 335 -~~~~~~~li~~~~~~g~~~~a-~~~~~~ 361 (546)
-..+|..+..+|.+.|++++| ...+++
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 023444444445555555554 333433
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=6.8e-06 Score=74.60 Aligned_cols=187 Identities=7% Similarity=-0.071 Sum_probs=90.6
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHhhhCCCCCC--------------
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTI-------MRRLVRGGRYDDAVEAFRGMKKYGVEKD-------------- 231 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-------------- 231 (546)
..++...|.+.|.++.+ - .+.....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~-~-dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN-Y-DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHH-h-ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 46788888888888887 3 56667777766 4555555555555555544432 1111
Q ss_pred --------HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H
Q 009011 232 --------TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD--V 301 (546)
Q Consensus 232 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~ 301 (546)
......+...+...|++++|.++|..+....|.+. ....+...+.+.+++++|+..|+...... .|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 11122333445555555555555555544333333 44444445555555555555554332221 000 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS--VITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2334444445555555555555554443222122 112333334444455555555555555443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=2.4e-06 Score=68.22 Aligned_cols=120 Identities=15% Similarity=0.009 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...+..+...+...|+++.|.+.|++.... .+.+...+..+...+...|++++|++.+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3456778889999999999999999999873 55678899999999999999999999999998754 55688889999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
.++...|++++|.+.+++.....|.+...+..+...+.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998877778888899998888887764
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=3.6e-06 Score=69.49 Aligned_cols=96 Identities=11% Similarity=-0.046 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 487 (546)
.+..+...+.+.|++++|...|+++.+.. +-+...|..+..+|...|++++|...|+++.+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 44555555666666666666666666553 334556666666666666666666666666665444 4556666666666
Q ss_pred HcCChHHHHHHHHHHHHC
Q 009011 488 ESGKLELACSFFEEMISK 505 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~ 505 (546)
..|++++|...|++.++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766654
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=3.2e-06 Score=73.66 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC--
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK----GCKP-- 334 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-- 334 (546)
..++..+...+...|++++|...+++.... +..+ ...++..+...|...|++++|...+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444555555555555555555444331 1111 1233444444455555555555555443322 1010
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 335 SVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
....+..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1123344444444555555555554444
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.6e-06 Score=75.64 Aligned_cols=97 Identities=8% Similarity=-0.041 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----
Q 009011 267 QIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFSP--DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPS---- 335 (546)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~---- 335 (546)
.++..+...+...|++++|...+++..+. +-.+ ....+..+...+...|++++|...+++...... ..+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34555566666666666666666654432 1111 133455566666677777777777666553210 001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 336 VITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
..++..+...+...|++++|.+.+++..
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1234555566666677777666666544
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=9.4e-07 Score=75.47 Aligned_cols=122 Identities=5% Similarity=0.005 Sum_probs=86.6
Q ss_pred HcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHccCCH--
Q 009011 172 GKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT-LVKGNSV-- 248 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~-- 248 (546)
...|++++|.+.++...+ . .+.+...+..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|+.
T Consensus 21 ~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR-A-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHH-H-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 356777778888877766 2 45667778888888888888888888888876643 4456666666666 6677777
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (546)
++|...+++.....|.+...+..+...|...|++++|...|++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888877776666677777777788888888888888888777663
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00031 Score=65.58 Aligned_cols=187 Identities=7% Similarity=0.002 Sum_probs=103.2
Q ss_pred hcCChH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 209 RGGRYD-DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS----------VEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 209 ~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
+.|.++ +|+++++.+...+ +.+..+++.--.++...+. ++++..+++.+....|.+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 334433 5666666666542 2233333332222222221 456666666666666667777776666666
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 009011 278 KTR--KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD-FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA----- 349 (546)
Q Consensus 278 ~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~----- 349 (546)
+.| .+++++.+++.+.+..+. +..+|+.-.-.+...|. ++++++.++.+.+.... |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 666 367777777777766544 66666666555666666 46777777777766433 555555554444433
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 009011 350 ---------KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA-----------GRVKDANEIFEDMKK 399 (546)
Q Consensus 350 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~ 399 (546)
+.++++++.+....... +-|..+|+.+-..+.+. +.++++.+.++++.+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 33556666666666543 33556665444444433 234555555555554
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=9.6e-07 Score=81.82 Aligned_cols=98 Identities=8% Similarity=-0.050 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...+..+...+.+.|++++|.+.|++..+. .+.+...|..+...|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567788899999999999999999999883 56688999999999999999999999999998764 56788899999
Q ss_pred HHHHccCCHHHHHHHHHHhhc
Q 009011 240 DTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~ 260 (546)
.++...|++++|...|++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=1.4e-06 Score=71.84 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
.+...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|.+.|++.....|.+...+..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 344555556666666666666666666665543 4455556666666666666666666666665555556666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=2.9e-06 Score=76.98 Aligned_cols=129 Identities=12% Similarity=-0.022 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS--VITYTIVMHAL 346 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~ 346 (546)
+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3444555555666666666665555432 222233333445555555555555555332211 010 12344445555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 347 GKAKQINEALKVYEKMKSDDCLPD--TSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555555543221122 223334444455555555555555555543
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.40 E-value=1.8e-06 Score=73.65 Aligned_cols=120 Identities=3% Similarity=0.106 Sum_probs=66.3
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG-WCKTRKV--DDA 285 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~a 285 (546)
..|++++|++.|++..+.. +.+...+..+..++...|++++|...|++.....|.+...+..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455666666666655432 34555566666666666666666666666555445555555555555 5555665 666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
...+++....... +...+..+...|...|++++|...++...+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666665554322 3455555555566666666666666665554
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=7.2e-06 Score=78.05 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---------------LATMSTIMRRLVRGGRYDDAVEAFRGMKKYG 227 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (546)
.|..+...|.+.|++++|...|++..+.. +.+ ..+|..+...|.+.|++++|++.|++..+..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34445555555555555555555555422 111 2444444444445555555555554444432
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 228 VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 228 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
+.+..++..+..++...|++++|...|++.....|.+..++..+..++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444444444444443444444444444444444444444
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=1.6e-05 Score=61.88 Aligned_cols=104 Identities=13% Similarity=-0.062 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.+..+...+...|++++|.+.|+..... .+.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444555555555555555555555542 33344555555555555555555555555554432 23344444444455
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIF 269 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~ 269 (546)
...|++++|.+.+++.....|.+...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 555555555555554444334343333
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=0.00045 Score=64.50 Aligned_cols=184 Identities=8% Similarity=0.002 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK----------VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK-- 315 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-- 315 (546)
-++|..++..+....|.+..+|+.--..+...|. +++++.+++.+....++ +..+|+.-.-.+.+.|
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcc
Confidence 3478888888888788888888776555554443 57788888888776554 6777777666666767
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ-INEALKVYEKMKSDDCLPDTSFYSSLIFILSKA---------- 384 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------- 384 (546)
.+++++.+++.+.+.... |...|+.-...+...|. ++++++.++++.+.+ +-|..+|+.....+.+.
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 478888888888877544 67777776667777777 578888888888765 34777777666655554
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHC
Q 009011 385 ----GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR-----------SEEENALKLLQKMEED 435 (546)
Q Consensus 385 ----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 435 (546)
+.++++++.+.......+. |...|+.+--.+.+. +..+++++.++++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777776654432 566666544444433 2345566666666554
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=8.8e-06 Score=77.45 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=99.0
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---------------HHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---------------TRALSVLM 239 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~ll 239 (546)
+++++|.+.|+.... . .+.....+..+...+.+.|++++|++.|++..+.. +.+ ..++..+.
T Consensus 127 ~~~~~A~~~~~~a~~-~-~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE-E-KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHH-H-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH-H-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 444555555443332 1 22346778888899999999999999999987753 222 46666677
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
.++.+.|++++|...+++.....|.+...|..+..+|...|++++|...|++..+..+. +...+..+..++.+.|+.++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766656666777777777777777777777777776665332 45566666666666666666
Q ss_pred H-HHHHHHHH
Q 009011 320 V-DDTLKEMQ 328 (546)
Q Consensus 320 a-~~l~~~m~ 328 (546)
+ ...+..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 33444443
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=7.6e-07 Score=77.69 Aligned_cols=121 Identities=7% Similarity=-0.030 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT----------------RALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
...+..+...+.+.|++++|++.|++..+.. +.+. .++..+..++...|++++|...++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456666677777778888888777776532 1111 4445555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
..|.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.++
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544221 33444444444444443333
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.1e-05 Score=64.12 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...+++.....|.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444555555555555555555554432 33445555555555555555555555555554445555555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~ 294 (546)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555544
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=2.5e-06 Score=70.37 Aligned_cols=95 Identities=16% Similarity=-0.033 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
.+..+...+...|++++|...|+......|.+...|..+..+|...|++++|...|++.....+. +...+..+..+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 33444444445555555555555444444444444555555555555555555555554443221 33344444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQE 329 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~ 329 (546)
.|++++|...|+...+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555444444443
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=2.6e-05 Score=60.69 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++.....|.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455556666677777777777777766542 345566666666666667777776666666555555666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009011 277 CKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~ 295 (546)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666654
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.3e-05 Score=63.80 Aligned_cols=112 Identities=9% Similarity=-0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
...|..+...+.+.|++++|.+.|++..+ . .+.+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK-R-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34677788899999999999999999988 3 56788999999999999999999999999998764 567888999999
Q ss_pred HHHccCCHHHHHHHHHHhhcCC------CCCHHHHHHHHHH
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCI------PLSSQIFNILIHG 275 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~li~~ 275 (546)
++...|++++|...|++..... |.+..+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 9999999999999998876644 4455555444433
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=7.7e-06 Score=63.14 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|++.|++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 333444444444444444444444331 22233334444444444444444444444443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=1.3e-05 Score=69.69 Aligned_cols=132 Identities=13% Similarity=0.014 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC---C-----------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV---S-----------LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV 228 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~---~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (546)
.+..+...+.+.|++++|.+.|++..+..+..+ . ..++..+...+.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 346678888999999999999999987331111 1 2788899999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ-KAMKEMFQQ 295 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 295 (546)
+.+...+..+..++...|++++|.+.|++.....|.+..++..+..++...++.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678889999999999999999999999988877888999999999988888777766 555555543
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=1.2e-05 Score=65.69 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|++.....|.+...+..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3344444555555555666655555555432 334555555555555555555555555555544455555555555556
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~ 294 (546)
...|++++|...|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666665555544
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=8.6e-06 Score=66.54 Aligned_cols=102 Identities=8% Similarity=-0.052 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...+.+.|++++|.+.|+.... . .+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM-L-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3456677888999999999999999988 3 67788999999999999999999999999998764 5677888889999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
+...|++++|.+.|+......|.+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999988766434333
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=2.1e-05 Score=60.62 Aligned_cols=102 Identities=10% Similarity=0.033 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--CHHHHHHH
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL--SSQIFNIL 272 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l 272 (546)
.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++.....|. +..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 345567778888999999999999999998764 567888899999999999999999999999887777 89999999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCC
Q 009011 273 IHGWCKT-RKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 273 i~~~~~~-g~~~~a~~~~~~m~~~g~ 297 (546)
...+.+. |++++|.+.+++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999988754
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=3.5e-05 Score=62.15 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++......|.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 344555555555555555555555555554432 3344455555555555555555555555554444445555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009011 275 GWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~ 294 (546)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=2.2e-05 Score=63.36 Aligned_cols=100 Identities=8% Similarity=-0.057 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV 237 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (546)
..+...|..+...+...|++++|...|+..... .+.+...+..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 356778899999999999999999999999883 56678999999999999999999999999998764 567888999
Q ss_pred HHHHHHccCCHHHHHHHHHHhhc
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
+..++...|++++|...|++...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=3.2e-05 Score=64.87 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...|++.....|.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455555666666666666666666665542 33555566666666666666666666666555555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=6.7e-05 Score=61.19 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD----TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
...+..+...+.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++.....|.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444444444444444444332 222 23333344444444444444444444333333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~ 294 (546)
..++...|++++|...|++...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444555555444444443
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=5.4e-05 Score=61.80 Aligned_cols=115 Identities=13% Similarity=-0.023 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
..+...+..+...+...|++++|.+.|++..+. .+.+ ...+..+...+...|++++|++.+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346677888999999999999999999999873 3333 7888899999999999999999999987753 456888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 235 LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 235 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+..+..++...|++++|.+.|++.....|.+..++..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 88899999999999999999999887667777666655544
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=1.9e-05 Score=62.83 Aligned_cols=94 Identities=7% Similarity=0.096 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------HHHHHHH
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS-------SQIFNIL 272 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l 272 (546)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444443322 2233333344444444444444444443332211111 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~ 294 (546)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=4.9e-05 Score=60.62 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV--SMD----AGTYASL 482 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~~l 482 (546)
+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|...+++..+.++ .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555554432 22344444455555555555555555554443211 111 1345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 483 VRGLIESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
..++...|++++|++.|++.++. .|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66666777777777777776643 3554443
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=2.7e-05 Score=65.28 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...+..+...+.+.|++++|++.|++..+. .+.+...|..+...|.+.|++++|++.|++..+.. +.+...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567788999999999999999999999883 56688999999999999999999999999998764 56688999999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQ 267 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 267 (546)
.++...|++++|.+.|++.....|.+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999988764444443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=4e-05 Score=60.91 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS--MD----AGTYASL 482 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~~~l 482 (546)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... ++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444555555555555555554432 223444445555555555555555555555442211 11 4556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLE 518 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 518 (546)
...+...|++++|.+.|+++.+.. |+......+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 666777777777777777766543 4544444333
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.12 E-value=5.2e-05 Score=60.45 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=25.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
+...+.+.|++++|.+.|++..+..|.+..+|+.+..+|.+.|++++|++.+++..
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444433334444444444444444444444444444443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.00016 Score=71.19 Aligned_cols=197 Identities=12% Similarity=0.054 Sum_probs=122.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPD----------------VVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-CKPS 335 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~ 335 (546)
...+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999998887643221 1235667788888888888888887766431 1112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-
Q 009011 336 VI----TYTIVMHALGKAKQINEALKVYEKMKS----DDCLP-DTSFYSSLIFILSKAGRVKDANEIFEDMKKQ--GVV- 403 (546)
Q Consensus 336 ~~----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~- 403 (546)
.. +.+.+-..+...|+.+++..++..... .+..+ -..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 122222333456778888887776643 22222 2456677777888888888888888776542 111
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 404 -P-NVLTYNTMISSACARSEEENALKLLQKMEED--LCK-P-D--CETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 404 -p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+ ....+..++..|...|++++|..++++.... .+. | . ...+..+...+...|+++.|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1345667777788888888888887776532 111 1 1 23455555566677777777777766654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=2.6e-05 Score=61.59 Aligned_cols=87 Identities=11% Similarity=0.073 Sum_probs=37.7
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 206 RLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
.+.+.|++++|+..|++..+.. +.+...+..+..++...|+.++|...|++.....|.+...+..+...+...|++++|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444443322 223334444444444444444444444444433344444444444444444444444
Q ss_pred HHHHHHHH
Q 009011 286 QKAMKEMF 293 (546)
Q Consensus 286 ~~~~~~m~ 293 (546)
...+++..
T Consensus 105 ~~~~~~al 112 (121)
T 1hxi_A 105 LASLRAWL 112 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00018 Score=70.83 Aligned_cols=197 Identities=11% Similarity=0.049 Sum_probs=138.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCC
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVS---------------LATMSTIMRRLVRGGRYDDAVEAFRGMKKY-GVEKD 231 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~ 231 (546)
...+.+.|++++|.+.|..+.+..+...+ ..++..+...|.+.|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999998874311111 235778899999999999999999987542 11222
Q ss_pred HH----HHHHHHHHHHccCCHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 009011 232 TR----ALSVLMDTLVKGNSVEHAYKVFLEFKD------CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ--GF-- 297 (546)
Q Consensus 232 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-- 297 (546)
.. +.+.+...+...|+.+.+.+++..... .......++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 223333344567889999988876532 12333567888999999999999999999987653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 298 SP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK--GCK-P-S--VITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 298 ~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
.+ ....+..++..|...|++++|..+++..... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888889999999999999999887643 121 1 1 23455666677788999999888777643
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=9.2e-05 Score=58.84 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=52.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HHHHHHHH
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSL---ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---TRALSVLM 239 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll 239 (546)
.+...+...|++++|.+.|+.+.+.. +.+. ..+..+...+.+.|++++|+..|++..+.. +.+ ..++..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455556666666666666665532 2222 455555566666666666666666655432 222 34455555
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
.++...|+.++|...|+.+....|.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 555555555555555555554444333
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=4.7e-05 Score=63.04 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.01 E-value=5e-05 Score=59.96 Aligned_cols=97 Identities=8% Similarity=-0.066 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
+..+...+.+.|++++|...|+...+ . .+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-K-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45677888999999999999999998 3 67789999999999999999999999999998764 557888899999999
Q ss_pred ccCCHHHHHHHHHHhhcCCC
Q 009011 244 KGNSVEHAYKVFLEFKDCIP 263 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~ 263 (546)
..|+.++|...+++.....|
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 99999999999998876444
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=0.00021 Score=56.69 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=58.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHH
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT---RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS---SQIFNILIHG 275 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~ 275 (546)
.+...+.+.|++++|++.|++..+.. +.+. ..+..+..++...|++++|...|+.+....|.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34555667777777777777766532 2222 355556666666777777777776665544544 5556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+.|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66677777777766666654
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=4.4e-05 Score=76.33 Aligned_cols=121 Identities=9% Similarity=-0.039 Sum_probs=90.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
+...+.+.|++++|.+.|++..+ . .+.+..+|..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34456678888899988888887 3 55668888888888888889999988888888764 556778888888888888
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHG--WCKTRKVDDAQKAMK 290 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 290 (546)
++++|.+.+++..+..|.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888776556566666666665 777788888888877
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.93 E-value=2.5e-05 Score=78.12 Aligned_cols=120 Identities=8% Similarity=-0.016 Sum_probs=92.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|.+.+++..+..|.+..++..+..+|.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345567889999999999987753 5568888889999999999999999999888877888889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEH--YCREKDFRKVDDTLK 325 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~l~~ 325 (546)
+|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998876432 33445555444 778888999988887
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=4.7e-05 Score=63.07 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
+..+...+...|++++|...+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444445555555555555554443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=2e-05 Score=61.77 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYG--VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
.|++++|+..|++..+.+ -+.+..++..+..++...|++++|...|++.....|.+..++..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666665542 122344555566666666666666666666665556666666666666666666666666
Q ss_pred HHHHHHHC
Q 009011 288 AMKEMFQQ 295 (546)
Q Consensus 288 ~~~~m~~~ 295 (546)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=0.00014 Score=72.29 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
.+|..+..++.+.|++++|...+++.....|.+...|..+..+|...|++++|...|++..+.... +...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 444445555555555555555555554444445555555555555555555555555555544221 3334444555555
Q ss_pred hcCChhHHH
Q 009011 313 REKDFRKVD 321 (546)
Q Consensus 313 ~~g~~~~a~ 321 (546)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=0.00015 Score=69.67 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.+..+...+.+.|++++|++.|++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344556666667777777777766653
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=0.00015 Score=69.68 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhC--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELN--------------NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV 228 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (546)
.+..+...+.+.|++++|.+.|++..+.. ..+....+|..+...|.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 46778889999999999999999887621 012233445555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
+.+...+..+..++...|++++|.+.|++..+..|.+..++..+...+.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 234444555555555555555555555554444444444444444444444444433
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=0.00017 Score=71.78 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA 345 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 345 (546)
..+|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+... -+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 355677777777778888887777777766433 566777777777777888888777777776532 244566666677
Q ss_pred HHhcCCHHHHH
Q 009011 346 LGKAKQINEAL 356 (546)
Q Consensus 346 ~~~~g~~~~a~ 356 (546)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766655
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.00054 Score=69.80 Aligned_cols=172 Identities=7% Similarity=-0.032 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--
Q 009011 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS----------VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR-- 280 (546)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 280 (546)
.++|++.++++.+.+ +.+..+|+.--.++...|+ ++++.+.++.+....|.+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 345566666665543 3344445444444444444 666666666666666666677766666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------
Q 009011 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK-DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA---------- 349 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~---------- 349 (546)
+++++.+.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 557777777777666544 5666666666666666 666677666666665433 555565555554442
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 350 ----KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVK 388 (546)
Q Consensus 350 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 388 (546)
+.++++++.+.+..... +-|..+|+..-..+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 34567777777776654 346666766666666665533
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.82 E-value=3.9e-05 Score=60.11 Aligned_cols=94 Identities=9% Similarity=-0.102 Sum_probs=66.2
Q ss_pred cCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 173 KSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
..|++++|+..|++..+.+. .+.+..++..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 45778888888888876210 14456778888888888888888888888887754 55677778888888888888888
Q ss_pred HHHHHHhhcCCCCCHH
Q 009011 252 YKVFLEFKDCIPLSSQ 267 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (546)
...+++.....|.+..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 8888877665455543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00032 Score=58.43 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..|..+..+|.+.|++++|...++...+.++. +...|..+..+|...|++++|...|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45666677777777777777777777775544 6677777777777888888888888777754
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=0.00012 Score=69.67 Aligned_cols=147 Identities=10% Similarity=-0.046 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.+..+...+.+.|++++|...|++..... ++... +...|+.+++...+. ...|..+..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45667777788888888888888877632 22110 111222222222110 12455556666
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH-YCREKDFRKVD 321 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~ 321 (546)
.+.|++++|...+++.....|.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555556666666666666666666666666666544221 23333333333 22334555566
Q ss_pred HHHHHHHHc
Q 009011 322 DTLKEMQEK 330 (546)
Q Consensus 322 ~l~~~m~~~ 330 (546)
..|..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 666665543
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=0.0018 Score=65.91 Aligned_cols=175 Identities=7% Similarity=-0.016 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK----------VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..-++|.+.++++....|.+..+|+.--..+.+.|+ ++++.+.++.+.+..++ +..+|+.-.-.+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 445678889998888888889999988888888877 89999999999987665 7888888888888888
Q ss_pred --ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 009011 316 --DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK-QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA-------- 384 (546)
Q Consensus 316 --~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 384 (546)
+++++++.++.+.+.... |...|+.-..++.+.| .++++++.++++.+.+ +-+..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999998655 7888888888888888 8999999999998876 44788888777776663
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 385 ------GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN 424 (546)
Q Consensus 385 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 424 (546)
+.++++.+.+++....... |...|+.+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999888875533 67788887777776666433
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00033 Score=58.36 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC-------CC----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKY-------GV----------EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
..+......+.+.|++++|+..|.+..+. .- +.+...|..+..++.+.|++++|...++....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455556666666777776666665442 00 11223445555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
..|.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44555555555555555566666665555555544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.61 E-value=0.00015 Score=68.95 Aligned_cols=149 Identities=7% Similarity=-0.016 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ..+|+.+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 445666778888999999999999998754 343321 223333444333221 23788999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA-LGKAKQINEA 355 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a 355 (546)
.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887543 6788999999999999999999999998765321 34444444444 2345677888
Q ss_pred HHHHHHHHhC
Q 009011 356 LKVYEKMKSD 365 (546)
Q Consensus 356 ~~~~~~~~~~ 365 (546)
...|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899888765
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.60 E-value=0.0021 Score=51.73 Aligned_cols=110 Identities=10% Similarity=-0.059 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDAN 391 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 391 (546)
++++|.+.|++..+.|.. +.. +...|...+.+++|.++|++..+.| +...+..+..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344455555554444411 211 3333444444444555555554443 33444444444444 44555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009011 392 EIFEDMKKQGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDL 436 (546)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 436 (546)
+.|++..+.| +...+..+...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554432 33444444444444 445555555555554443
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=9.4e-05 Score=56.91 Aligned_cols=89 Identities=13% Similarity=0.008 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-------H
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD-------T 232 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~ 232 (546)
+...+..+...+.+.|++++|.+.|++..+. .+.+...+..+...+.+.|++++|++.|++..+. .|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 3455666777777778888888888777762 4556777777777777778888888777777654 233 3
Q ss_pred HHHHHHHHHHHccCCHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~ 252 (546)
..+..+..++...|+.+.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHhHhhhH
Confidence 34444444444444444333
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.56 E-value=0.00097 Score=54.53 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-C-----CH-----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-K-----DT-----RALSVLMDTLVKGNSVEHAYKVFLEFKDC------ 261 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-----~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 261 (546)
.+......+.+.|++++|++.|++..+.... | +. ..|..+..++.+.|++++|...+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444455566677777777777766553211 0 11 14444444444444444444444443332
Q ss_pred -CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 262 -IPLSSQIF----NILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 262 -~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
.|.+...| +....++...|++++|+..|++..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444 555555555555555555555543
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.56 E-value=0.0013 Score=53.77 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKN-------DVSMDAGTY----ASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|..+..++.+.|++++|...+++.++. ++. +...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666667766666666666654 433 45566 7778888888999999998888764
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00033 Score=69.65 Aligned_cols=88 Identities=16% Similarity=0.039 Sum_probs=47.1
Q ss_pred HHHcCCChHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCC--CCCHHHHH
Q 009011 170 VLGKSKKFCLMWELVKEMDELN------NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK-----YGV--EKDTRALS 236 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~--~~~~~~~~ 236 (546)
.+...|++++|..++++..+.. ..+....+++.+...|...|++++|..++++..+ .|. +-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556677777777776665431 0122345667777777777777777777666532 110 11123344
Q ss_pred HHHHHHHccCCHHHHHHHHHH
Q 009011 237 VLMDTLVKGNSVEHAYKVFLE 257 (546)
Q Consensus 237 ~ll~~~~~~g~~~~a~~~~~~ 257 (546)
.|...|...|++++|..++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 444444555555555444433
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.53 E-value=0.003 Score=50.81 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEA 355 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 355 (546)
++.++|.+.|++..+.|. ++.. +-..|...+..++|.+.|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 355667777777666652 2222 4455555566666777777766664 45566666666666 6677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQG 401 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 401 (546)
.++|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777665 45566666666666 677777777777776654
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.47 E-value=0.00065 Score=67.56 Aligned_cols=124 Identities=7% Similarity=-0.016 Sum_probs=59.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 009011 381 LSKAGRVKDANEIFEDMKKQ---GVVP----NVLTYNTMISSACARSEEENALKLLQKMEED-----L-CKPD-CETYAP 446 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 446 (546)
+...|++++|..++++..+. -+.+ ...+++.|..+|...|++++|..++++..+. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666666666555431 1111 1234555666666666666666666655421 1 0111 134555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 447 LLKMCCRKKRMKVLNFLLTHMFK-----NDVS-M-DAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 447 ll~~~~~~g~~~~a~~~~~~m~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
|...|...|++++|..++++..+ .|.. | ...+.+.+-.++...|.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555443 2221 1 112233334444445555555555555543
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0018 Score=47.24 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=8.4
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 009011 203 IMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m 223 (546)
+...+.+.|++++|+..|++.
T Consensus 15 la~~~~~~~~~~~A~~~~~~a 35 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKA 35 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 333333444444444444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.001 Score=51.44 Aligned_cols=61 Identities=15% Similarity=-0.016 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 232 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
...+..+..++...|++++|...|++.....|.+...|..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333334444444444444443333333333444444444444444444444444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00063 Score=52.06 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP 263 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 263 (546)
..+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++.....|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 344444555555555555555555554432 33444444444455555555555555544444333
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.30 E-value=0.0023 Score=46.70 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.+..+...+...|++++|...+++.....|.+..++..+...+.+.|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444555555555555555544434444445555555555555555555555554443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.30 E-value=0.0026 Score=49.17 Aligned_cols=78 Identities=6% Similarity=-0.052 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
|.+.|++.....|.+...+..+...|...|++++|...|++....... +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555666777777777777777777777777776665432 455666666667777777777777666554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.23 E-value=0.00094 Score=54.49 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 009011 421 EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR----------MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES- 489 (546)
Q Consensus 421 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 489 (546)
.+++|.+.++...+.. +-+...|..+..++...++ +++|+..|++..+.++. +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhc
Confidence 3444444444444432 2233444444444443333 34666666666665444 555566666666554
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 490 ----------GKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 490 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
|++++|.+.|++.++. .|+...|...+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4788888888888754 47766665555443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.11 E-value=0.001 Score=54.34 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS----------VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
+.+++|++.++...+.. +.+...+..+..++...++ +++|...|++.....|.+..+|+.+..+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34455555555544432 3344444444444444433 346666666665555666666666666666553
Q ss_pred -----------CHHHHHHHHHHHHHC
Q 009011 281 -----------KVDDAQKAMKEMFQQ 295 (546)
Q Consensus 281 -----------~~~~a~~~~~~m~~~ 295 (546)
++++|.+.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 566666666666554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.003 Score=47.47 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
.+...+..+...|.+.|++++|...|++..+..+. +...|..+..+|...|++++|.+.+++..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555555555555444322 33344445555555555555555554443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0029 Score=47.49 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+...+..+..++...|++++|...|++.....|.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555555555555555444455555566666666666666666666655543
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.85 E-value=0.066 Score=57.23 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 305 TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 305 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
..++..+.+.|..++|+++.+. ... -.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~~---~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QDQ---KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HHH---HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cch---heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555666666666666654421 110 122334556777776664322 3556677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009011 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLL 464 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 464 (546)
|+++.|.+.|..+.. |..+...+...|+.+...++.+.....| -++....++.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766531 2233344444556655555544444433 1223333344455555555444
Q ss_pred H
Q 009011 465 T 465 (546)
Q Consensus 465 ~ 465 (546)
.
T Consensus 760 ~ 760 (814)
T 3mkq_A 760 I 760 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.43 E-value=0.066 Score=50.22 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
.+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 35555556555555555566666666666665553 45555555555555566666666666555554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.37 E-value=0.081 Score=49.64 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555544432 3444444444444445555555555554444
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.31 E-value=0.0087 Score=44.48 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
.+..+...+...|++++|++.|++.
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333444444444444444433
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.25 E-value=0.015 Score=56.71 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKD--------CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+++.|..+|...|++++|..++++... ..|....+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3445555555555555555555544321 1222234467777777777777777777766543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.21 E-value=0.021 Score=55.72 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=49.3
Q ss_pred hcCChHHHHHHHHHhhhCC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhc--------CCCCCHHHHHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYG---VEKD----TRALSVLMDTLVKGNSVEHAYKVFLEFKD--------CIPLSSQIFNILI 273 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~---~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li 273 (546)
++|++++|++++++..+.. +.|+ ..+++.+..+|...|++++|..++++... ..|....+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4456666666666554321 1111 34456666666666666666666654432 1222234577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~ 294 (546)
..|...|++++|+.++++..+
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 777777777777777776653
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.15 E-value=0.14 Score=54.77 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=78.4
Q ss_pred HHHHcCCChHHHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC
Q 009011 169 DVLGKSKKFCLMWE-LVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS 247 (546)
Q Consensus 169 ~~~~~~~~~~~a~~-l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 247 (546)
......+++++|.+ ++..+. +......+++.+.+.|.+++|+++.+.-. .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 33445778888766 542222 02223666777778888888876653211 11233456788
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
+++|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.+ |..+...|...|+.+...++.+..
T Consensus 668 ~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 668 LTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888876443 3667888888888888888888888887753 233344444455555555554444
Q ss_pred HHc
Q 009011 328 QEK 330 (546)
Q Consensus 328 ~~~ 330 (546)
...
T Consensus 734 ~~~ 736 (814)
T 3mkq_A 734 ETT 736 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.04 E-value=0.37 Score=37.41 Aligned_cols=139 Identities=11% Similarity=0.095 Sum_probs=78.4
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
-.|.+++..++..+... +.+..-||-+|--....-+-+-..++++.+-.. -|... -|++..+...
T Consensus 19 ldG~v~qGveii~k~~~--ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~----------C~NlKrVi~C 83 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK--SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDK----------CQNLKSVVEC 83 (172)
T ss_dssp HTTCHHHHHHHHHHHHH--HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGG----------CSCTHHHHHH
T ss_pred HhhhHHHHHHHHHHHcC--CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHh----------hhcHHHHHHH
Confidence 35666666666665543 234444555555555555555555555554332 12111 1222222222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
+-.+- .+.......+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-++|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 22211 13334555667777777777777777775443 3567777777778888888888888888877777654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.02 E-value=0.018 Score=56.16 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHH
Q 009011 419 RSEEENALKLLQKMEED---LCKPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFK-----NDV-SMD-AGTYASLVR 484 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~ 484 (546)
.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|..++++..+ .|. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665432 11122 24566666667777777777666666554 222 122 345777777
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 009011 485 GLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 78888888888887777653
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.94 E-value=0.039 Score=53.82 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CC-CHHHHH
Q 009011 415 SACARSEEENALKLLQKMEEDL---CKPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFK-----NDV-SM-DAGTYA 480 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~-~~-~~~~~~ 480 (546)
.+...|++++|+.++++..+.. ..|+ ..+++.+..+|...|++++|..+++++.+ .|. .| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777665431 1122 24566677777777777777777776654 222 12 234577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 009011 481 SLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|...|...|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 778888888888888888887654
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.48 Score=39.10 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=48.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
....+.|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|....+ +..+.-.|.-.|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHH
Confidence 3344555555555555443 2344555555555555555555555555543 4444444555555544
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 285 AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
..++-+.....| -++.....+.-.|+++++.++|
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 444333333322 1223333344445555555554
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.75 E-value=0.073 Score=39.20 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=25.6
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQ-IFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+...|++++|.+.+++.....|.+.. .+..+..+|...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444444444444444443344444 4444555555555555555555554443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.64 E-value=0.12 Score=37.94 Aligned_cols=66 Identities=8% Similarity=0.067 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 439 PDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+...+..+..++...++ .++|..++++..+.++. +......+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 46666666666665554 5666666666666777777777777776654
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.39 Score=39.68 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=22.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
.+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14445555555555555555555555443
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.41 E-value=0.7 Score=35.93 Aligned_cols=139 Identities=10% Similarity=0.082 Sum_probs=78.8
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 208 VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
.-.|..++..++..+..+ ..+..-||-++.-....-+-+-..++++.+-+.+..+ .+|++.....
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH------------hhhcHHHHHH
Confidence 345667777777777654 2344555555555555555555556666554433222 2334333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 367 (546)
.+-.+- .+.......++.....|+-++..+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 1333444555666677777777777777543 2455666666777777777777777777777777664
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.23 E-value=0.11 Score=41.88 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 439 PDCETYAPLLKMCCRKK---RMKVLNFLLTHMFKND-VSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
++..+.-.+..++++.+ +.+++..++++..+.+ +.-+...+-.+.-++.+.|++++|.++++.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444 3334444444444432 10123333444444555555555555555555
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.19 E-value=0.16 Score=38.05 Aligned_cols=26 Identities=4% Similarity=-0.111 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
..+..+...+.+.|++..|...|+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHH
Confidence 33444445555555555555555544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.17 E-value=0.14 Score=37.48 Aligned_cols=48 Identities=4% Similarity=0.099 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.++|..++++.....|.++.....+...+.+.|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444444444444555555555555555555555555443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.12 E-value=1.8 Score=38.99 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 009011 282 VDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCRE-----KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA-KQI 352 (546)
Q Consensus 282 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 352 (546)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666554 233 44666666666663 77777777777777653322345555566666663 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 009011 353 NEALKVYEKMKSDDCL 368 (546)
Q Consensus 353 ~~a~~~~~~~~~~~~~ 368 (546)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777766544
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.88 E-value=0.33 Score=36.29 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-----NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
.+..-+-.|...+.+.|+++.|...|+...+.. ........+..+..++.+.|++++|+..+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566788999999999999999999887642 12356778888899999999999999999988764
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.33 E-value=0.37 Score=38.69 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 264 LSSQIFNILIHGWCKTR---KVDDAQKAMKEMFQQGFSP--DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
++..+...+.-++++.+ +++++..+|++..+.. .| ....+..+.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44444444555555544 3345555555544432 11 1233333444445555555555555555543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.94 E-value=0.44 Score=42.87 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChH
Q 009011 423 ENALKLLQKMEEDLCKPD---CETYAPLLKMCCR-----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES-GKLE 493 (546)
Q Consensus 423 ~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~ 493 (546)
..|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.++.-+..++..+.+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444443 233 2344444444554 255555555555555543332345555555555553 6666
Q ss_pred HHHHHHHHHHHCCCC
Q 009011 494 LACSFFEEMISKGIV 508 (546)
Q Consensus 494 ~A~~~~~~m~~~g~~ 508 (546)
+|.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666655444
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.72 E-value=0.67 Score=36.84 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHH---HHHHhcCChHHHHHHHHHHHhCC
Q 009011 405 NVLTYNTMISSACARSEE------ENALKLLQKMEEDLCKPDCE----TYAPLL---KMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+- ..+...++.++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555666 6666666666553 344321 111110 01233478888999998887743
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 472 VSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 472 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
-.- ...|-...+.-.++|+...|.+++...+..+.+| ...+...++.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 232 7777777777789999999999999999776544 44455555555
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.84 E-value=12 Score=39.97 Aligned_cols=306 Identities=11% Similarity=0.078 Sum_probs=169.7
Q ss_pred HHHHHHHHHhcCChHHH-HH-HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC-CCCH--HHHHHHHH
Q 009011 200 MSTIMRRLVRGGRYDDA-VE-AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI-PLSS--QIFNILIH 274 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A-~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~li~ 274 (546)
-.++..++...|-..+. +. ..+++.+. .+....-...--+....|+.+++..++....... ..+. ..-..+.-
T Consensus 342 A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 342 AVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 34668888888854332 21 12344332 2222223333345677888888888776654311 2232 33444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHH--HH--HH
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQGF-------SPDVVSYTCFIEHYCREKDF-RKVDDTLKEMQEKGCKPSVIT--YT--IV 342 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~~--~~--~l 342 (546)
+...+|.-+++...+.......- .+....-..+--+++-.|.- +++.+.+..+.... +... .. ++
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 66677766677777777654311 01112222333334434432 45666666666542 2211 12 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHH
Q 009011 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS--KAGRVKDANEIFEDMKKQGVVPNVL-TYN---TMISSA 416 (546)
Q Consensus 343 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~-~~~---~li~~~ 416 (546)
...+.-.|+-+....++..+.+.. +..+...+..+++ ..|+.+.+..+++.+... .+.. -|. ++.-+|
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAy 570 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHh
Confidence 333446678888888888777642 3344444444444 678888888888888763 2332 233 234467
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHH
Q 009011 417 CARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL-ELA 495 (546)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A 495 (546)
+..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 78889887777888887642 2233333333334555677777777777666543 34555555555555556654 578
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 496 CSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 496 ~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
...+..+.. .++..+-...+.++
T Consensus 649 id~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 649 IDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHcc---CCCHHHHHHHHHHH
Confidence 888888863 34555554444443
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.47 E-value=1.9 Score=34.24 Aligned_cols=51 Identities=6% Similarity=-0.011 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
++.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432121 3334333344444555555555555555444
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.31 E-value=13 Score=39.47 Aligned_cols=227 Identities=9% Similarity=0.004 Sum_probs=115.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCC-------CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCHHHH--
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNG-------YVSLATMSTIMRRLVRGGR-YDDAVEAFRGMKKYGVEKDTRAL-- 235 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~-- 235 (546)
.+.-++..+|.-+++..++....... . ......-..+.-+++-.|. -+++.+.+..+.... .+.....
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~Aa 493 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVEN-SGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAA 493 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCc-cccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 33344555666566777666655422 1 0111112222233333343 245666666655422 1111111
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH---HHHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD-VVSYT---CFIEHY 311 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~---~li~~~ 311 (546)
..+...++..|+-+....++..+.+....+..-.-.+.-++...|+.+.+..+++.+... .+ ..-|. ++..+|
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAy 570 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHh
Confidence 223333456677777777776655433323333444444555778888888887777764 22 22333 233466
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 009011 312 CREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRV-KDA 390 (546)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A 390 (546)
+..|+.....+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|...--.++.-+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 77788777777887777642 1122222222233334566666677776666544 34443333344444444443 567
Q ss_pred HHHHHHHHH
Q 009011 391 NEIFEDMKK 399 (546)
Q Consensus 391 ~~~~~~~~~ 399 (546)
.+++..+..
T Consensus 649 id~L~~L~~ 657 (963)
T 4ady_A 649 IDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 777777765
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.22 E-value=0.68 Score=48.06 Aligned_cols=128 Identities=12% Similarity=0.061 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcC-ChHHHHHHHHHhhhC------CCC-CCHH
Q 009011 164 YNTMVDVLGKSKK-FCLMWELVKEMDELNNGYVSLATMS-TIMRRLVRGG-RYDDAVEAFRGMKKY------GVE-KDTR 233 (546)
Q Consensus 164 ~~~ll~~~~~~~~-~~~a~~l~~~m~~~~~~~~~~~~~~-~li~~~~~~g-~~~~A~~~~~~m~~~------~~~-~~~~ 233 (546)
-..|+..+...++ .+.|..+|+++.... +.....+. .++..+.+.+ +--+|++++.+..+. ... .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 4556666666777 588999999998843 32222232 2333333332 233466666554321 111 1211
Q ss_pred ----------HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 234 ----------ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 234 ----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
.+..-.+.|...|+++.|.++-++.....|.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223446678999999999999988899999999999999999999999999999874
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.06 E-value=5.8 Score=38.62 Aligned_cols=189 Identities=11% Similarity=0.213 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC
Q 009011 280 RKVDDAQKAMKEMFQQ-----GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG----KAK 350 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~----~~g 350 (546)
|++++|.+.+-.+.+. ...........++..|...|+++...+.+..+...... -......++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6778887777666542 23334556777888888888888887777665543222 1222333443332 222
Q ss_pred CHHH--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHH
Q 009011 351 QINE--ALKVYEKMKS--DD-CLP---DTSFYSSLIFILSKAGRVKDANEIFEDMKK--QGVVPN---VLTYNTMISSAC 417 (546)
Q Consensus 351 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~li~~~~ 417 (546)
..+. -..+.+.+.. .| +-. .......|...|...|++.+|.+++.++.. .|.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111110 11 011 122345667777788888888888887753 222211 234555667777
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 418 ARSEEENALKLLQKMEE----DLCKPDC--ETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
..+++.+|..++.++.. ....|+. ..|...+..+...+++.+|...|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77888888887777632 2112221 3455566666777777777777666654
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.04 E-value=3.6 Score=45.68 Aligned_cols=190 Identities=11% Similarity=0.038 Sum_probs=92.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-----------------
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----G----------------- 296 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------------- 296 (546)
++..+...+..+.+.++.... +.+......+..+|...|++++|...|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 334444455555444433222 234444445555566666666666666443110 0
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 009011 297 -FSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV----ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT 371 (546)
Q Consensus 297 -~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 371 (546)
...-..-|..++..+-+.|.++.+.++-....+....-+. ..|..+.+.+...|++++|...+-.+...... .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 0001123566666777777777777666655543222121 14566677777777777777777666654332 3
Q ss_pred HHHHHHHHHHHhc------------CCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 009011 372 SFYSSLIFILSKA------------GRVKDANEIFEDMKKQ--GVVPNVLTYNTMISSACARSEEENAL-KLLQKME 433 (546)
Q Consensus 372 ~~~~~li~~~~~~------------g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~ 433 (546)
.....++..+|.. |..++..+++....+. .+...+.-|..|=.-+..+|++.+|- -+|+.+.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 4445555544433 3455666666433211 01111122333333344556655444 4455543
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.42 E-value=1.3 Score=34.10 Aligned_cols=83 Identities=12% Similarity=-0.032 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHH
Q 009011 422 EENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV---LNFLLTHMFKND-VSMDAGTYASLVRGLIESGKLELACS 497 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 497 (546)
...+.+-|.+....| .++..+--.+..++++...... +..++++..+.+ +.-.....-.+.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444433 2555555555556666555444 666666666543 11133444555566777777777777
Q ss_pred HHHHHHHC
Q 009011 498 FFEEMISK 505 (546)
Q Consensus 498 ~~~~m~~~ 505 (546)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777643
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.26 E-value=1.1 Score=46.60 Aligned_cols=126 Identities=10% Similarity=0.110 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCHHHH--HHHHHHHHccCC-HHHHHHHHHHhh-------cCCC-CCH
Q 009011 199 TMSTIMRRLVRGGR-YDDAVEAFRGMKKYGVEKDTRAL--SVLMDTLVKGNS-VEHAYKVFLEFK-------DCIP-LSS 266 (546)
Q Consensus 199 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~g~-~~~a~~~~~~~~-------~~~~-~~~ 266 (546)
....++..+...|+ .+.|+++|+++.+. .|...++ ..++..+...++ --+|.+++.+.. ...+ .+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34455666655666 57799999999875 3433332 333333333332 223444443321 1122 221
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 267 ----------QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 267 ----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
...+.=++.+...|+++-|+++-++....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12223345567789999999999998876433 6889999999999999999999988876
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.07 E-value=2.5 Score=40.35 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 009011 445 APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS-----KGIVPYHSTYKMLE 518 (546)
Q Consensus 445 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 518 (546)
..++.++...|+.+++...+..+....+- +...|..+|.+|.+.|+..+|.+.|+++.+ .|+.|...+-...-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33455566667777776666666654433 666777777777777777777777766543 27777766644333
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.83 E-value=1.7 Score=33.52 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.|.-++.+.|++++|.+.++.+.+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.20 E-value=14 Score=41.00 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=110.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------------
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD----D---------------- 366 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~---------------- 366 (546)
++..+.+.+..+-+.++... ++.+....-.+..++...|++++|.+.|.+.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444455555555443322 2234444445667788899999999998764210 0
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 367 --CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV----LTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440 (546)
Q Consensus 367 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 440 (546)
...-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+.+++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 0011245677888888888888888887766543221121 257778888888899999988887776653 23
Q ss_pred HHHHHHHHHHHHhcCChHH------------HHHHHHHHHh-C-CCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHH
Q 009011 441 CETYAPLLKMCCRKKRMKV------------LNFLLTHMFK-N-DVSMDAGTYASLVRGLIESGKLELACS-FFEEM 502 (546)
Q Consensus 441 ~~~~~~ll~~~~~~g~~~~------------a~~~~~~m~~-~-~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m 502 (546)
...+..|+...|..|..+. ..+++..-.+ . .+......|..|-.-+...|++..|.. +|+.+
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 4567777777776665443 3333332211 1 112122345555555666777665544 34443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.18 E-value=1.5 Score=41.91 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
+..+...|+.+++...+..+....|.+...|..+|.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555555554444444555555555555555555555555555544
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.99 E-value=1.6 Score=31.91 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
-+..+-++.+....+.|++....+.+.+|-+.+++..|.++++.++........+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3455555666666667777777777777777777777777777776644444445655543
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.44 E-value=19 Score=34.92 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 175 KKFCLMWELVKEMDEL----NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
|+++.|.+.+-.+.+. ....-+......++..+.+.|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6777787776655542 11234567777788888888888887777766643
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.78 E-value=26 Score=35.63 Aligned_cols=141 Identities=10% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH-HHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR-ALSVLMDT 241 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~ 241 (546)
|.....++ +.|+++.+..+...+.. .+. ....|..+...+ .....++...++++-.. .|-.. .-..-+..
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~---~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKD---YPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTT---STTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcC---CCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHH
Confidence 44444433 45777777666655533 222 122332222221 12244544444444321 22222 22444555
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 317 (546)
+.+.+++.....++. ..|.+...-.....+....|+..+|......+=..|.. ....+..++..+.+.|.+
T Consensus 82 l~~~~~w~~~l~~~~----~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 82 LARREDWRGLLAFSP----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHTTCHHHHHHHCC----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HHhCCCHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 666777665554332 23556666667777777778777666665555444322 333444555555544443
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.88 E-value=19 Score=33.15 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHhhhCCCCCCHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAF----RGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~l 238 (546)
+|.++..=|.+.+++++|++++-.- ...+.+.|+...|-++- +-+.+.++++|......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4456666777888888888876442 33445556655544443 444556677777777777
Q ss_pred HHHHHccCCHH--------HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 239 MDTLVKGNSVE--------HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 239 l~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
+..+.....-+ +|.++-.+.......++.....+...|.+.+++.+|+..|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66665543211 1111111111123345666666777777777777766655
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.51 E-value=9.4e-05 Score=70.69 Aligned_cols=235 Identities=10% Similarity=0.074 Sum_probs=133.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
-.+.+|..|..+..+.+++.+|++-|-+ ..++..|..+|....+.|.+++-+..+...++. ..++..=+.|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 3456778888888888888887765522 234556777788888888888888888776654 3333444577
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
+-+|++.+++.+.++++ ..++..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 123 i~ayAk~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHHTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHHHhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 88888888776544432 123443445666667777777766655544432 223333444555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
.|.+.-++ .-++.||..+..+|...+++..|.-.--.+.-.. | -...++..|-..|.+++...+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 55432211 1144466666666666666665544333222111 0 11224555666666666666666554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 399 KQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 399 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
.. -......|+-|.-.|++- ++++..+.++
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 21 123455566666666654 4444444443
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.54 E-value=34 Score=34.77 Aligned_cols=274 Identities=10% Similarity=0.090 Sum_probs=131.4
Q ss_pred ChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 009011 176 KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255 (546)
Q Consensus 176 ~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 255 (546)
..+++...+++-.. .+.....-+.-+..+.+.+++...++.+.. .+.+...-+....+....|+..+|....
T Consensus 54 ~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~ 125 (618)
T 1qsa_A 54 PAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGA 125 (618)
T ss_dssp CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 45555555544332 344444555667778888888877765443 2556666677788888889988777777
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 256 LEFKDCIPLSSQIFNILIHGWCKTRKVDD--AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 256 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
..+-......+..++.++..+.+.|.+.. ...=++.+...| +...-..++... . .+.....+.+..+... +
T Consensus 126 ~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p 198 (618)
T 1qsa_A 126 KELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--P 198 (618)
T ss_dssp HHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--G
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--h
Confidence 66544334455567777777777665432 333333333332 111111121111 0 1111111112222221 1
Q ss_pred CCHHHHH--------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHH
Q 009011 334 PSVITYT--------------IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS----SLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 334 p~~~~~~--------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~ 395 (546)
++..... ..+.-+.+ .+.+.|...+....+.. ..+..... .+...+...+...++...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 276 (618)
T 1qsa_A 199 NTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (618)
T ss_dssp GGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 1221111 01112222 25566666666665432 12222222 22222223332344555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 396 DMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
...... .+.....-.+....+.|+++.|...|+.|......-+...|. +.+++...|+.++|..+|..+..
T Consensus 277 ~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW-~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 277 DAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW-QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHH-HHHHHHHcCCHHHHHHHHHHHhc
Confidence 544322 233333333344445677777777777665432111112232 34455667777777777777654
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.46 E-value=8.8 Score=28.05 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
.+-++.+....+.|++....+.+++|.+.+++..|.++++-+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444444
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.21 E-value=25 Score=32.09 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHhhhCCCCCCHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA----FRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~l 238 (546)
.|.++..=|.+.+++++|++++..- ...+.+.|+...|-++ .+-..+.+++++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556677777778888887776543 3344555666555443 4444556777777777777
Q ss_pred HHHHHccCCH--------HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 239 MDTLVKGNSV--------EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 239 l~~~~~~g~~--------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
+..+.....- .+|.++-.+.......++.....+...|.+.|++.+|+..|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7665543211 112222111111123466777777777777777777776553
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.85 E-value=5.1 Score=31.02 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 216 AVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
..+-++.+....+.|++......+.+|-+.+++..|.++|+.++.+......+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3444444555556666666666666666666666666666666654444444455544
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.49 E-value=34 Score=32.42 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPD-----VVSYTCFIEHYCREKDFRKVDDTLKEMQEK--GCKPSVITYTIV- 342 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~l- 342 (546)
-++..|...|++.+|.+++.++.+.--..| ...|-.-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567777777777777777777665311111 223444556677777777777777666532 222333322211
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 009011 343 ---MHALG-KAKQINEALKVYEKMK 363 (546)
Q Consensus 343 ---i~~~~-~~g~~~~a~~~~~~~~ 363 (546)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12234 5677777777666553
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.74 E-value=13 Score=28.80 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 334 PSVITYTIVMHALGKAKQI---NEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 334 p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
|+..+--.+..++.++.+. .+++.+++++.+.+..-.....-.+.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444433444444444432 23445555544433111233333444455555555555555555554
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.39 E-value=14 Score=28.61 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
+..+-++.+...++.|+..+....+.+|-+.+++.-|.++|+-.+.+- .+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344455555566677777777777777777777777777777766552 2334455555543
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.06 E-value=19 Score=27.92 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 438 KPDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 438 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
.|+..|--.+..++.+..+ ..++..+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 5666655555556666554 345677777777655333456666677778888888888888888774 345543
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.09 E-value=20 Score=31.65 Aligned_cols=118 Identities=12% Similarity=0.031 Sum_probs=68.7
Q ss_pred HHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHccC
Q 009011 169 DVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG--VEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 169 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g 246 (546)
..+.+.|++++|++....-.+ . .|.+...-..+++.+|-.|++++|..=++...+.. ..|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR-~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK-A-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH-T-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 456678888888888877766 4 77788888888888888899988888877776532 11223344444433
Q ss_pred CHHHHHH-HHHH--hhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 009011 247 SVEHAYK-VFLE--FKDCIPLSSQIFNILIHGWC--KTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 247 ~~~~a~~-~~~~--~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 295 (546)
+...+ +|.- ...-+.....-...|+.+.. ..|+.++|.++-++..+.
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111 1110 01112222333344444443 347777777777666543
No 258
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.23 E-value=0.0053 Score=58.93 Aligned_cols=195 Identities=10% Similarity=0.107 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
|+..|..+|.+..+.|++++-.+.+.-.++.. .....=+.|+-+|++.++..+-.+++ -.|+..-...+.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VG 151 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVG 151 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHH
Confidence 44556677777777777777777766555422 22233345677777777765432221 135555556666
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
+-|...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-++. -++.||..+-.+|...+++.-
T Consensus 152 Drcf~e~lYeAAKilys~isN--------~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCC--------CTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTT
T ss_pred HHHHHccCHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHH
Confidence 667777777776666654432 333344445555555543321111 245556666666666666555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
|.-.--.++-.. | -...++..|-..|.+++.+.+++.-.... .....+|+-|.-.|++-
T Consensus 218 AqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 218 AQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 433332222111 1 11234445555666666665555544221 24555555555555543
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.93 E-value=23 Score=27.79 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009011 377 LIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 377 li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
+.-++.+.|++++|.+..+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.95 E-value=12 Score=30.38 Aligned_cols=115 Identities=8% Similarity=-0.048 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHH
Q 009011 376 SLIFILSKAGRVKDANEIFEDMKKQ-GVVPNV-------LTYNTMISSACARSEEENALKLLQKMEEDL-CKPDC-ETYA 445 (546)
Q Consensus 376 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-~~~~ 445 (546)
.-+..+...|.++.|+-+.+.+... +.+|+. .++..+.+++...|++..|...|++..+.. .-+.. .++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3455666777777777776654421 112332 244556667777778888887777764321 11111 1111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 446 PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 446 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
.+- ....... ......+...--.+..+|.+.|++++|+.+++...
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 110 0000000 00112244555557788889999999998887653
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.73 E-value=22 Score=34.27 Aligned_cols=98 Identities=11% Similarity=0.009 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHH--
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQ--GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK---GCKPSVITYT-- 340 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~-- 340 (546)
+...+...|.+.|++++|.+.+.++... +..--...+-..++.+...+++..+...+.+.... +..|+....-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4667888888888888888888888764 22223556777788888888888888888776542 2223221100
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
.-...+...+++..|-+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111233567888888877766543
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.01 E-value=19 Score=26.23 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
..++|..+-+.+...+. ...+-.+-+..+.+.|++++|..+.+... .||...|-++.. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554432 22222222334555666666665554433 456666555443 34556666666555
Q ss_pred HHHHCC
Q 009011 431 KMEEDL 436 (546)
Q Consensus 431 ~m~~~~ 436 (546)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555544
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.91 E-value=15 Score=29.76 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=57.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCCCHHHHH
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVS-------LATMSTIMRRLVRGGRYDDAVEAFRGMKKY--GVEKDTRALS 236 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~ 236 (546)
.=+..+...|.++.|+-+.+.+.......++ ..++..+.+++...|++.+|...|++..+. .+.....+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3456666777777777666664432101121 124555667777777777777777775321 1111111111
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 237 VLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 237 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+. . ...... . ...+.+..+-.-+..+|.+.|++++|+.+++.+..
T Consensus 105 ~~~-~---~ss~p~------s--~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STG-N---SASTPQ------S--QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccc-c---cCCCcc------c--ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 110 0 000000 0 01233445555677777788888888777776643
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.86 E-value=47 Score=30.23 Aligned_cols=80 Identities=11% Similarity=-0.050 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK---KRMKVLNFLLTHMFKNDVSMDAGTYAS 481 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ 481 (546)
++.....+...|.+.|++.+|...|-. |..-+...+..++.-+... |...++--++ -..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH
Confidence 667777888888888888888876641 1111345555555544443 4433322111 111
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 009011 482 LVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~ 503 (546)
+-.|.-.|+...|..+++...
T Consensus 195 -VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHhcCHHHHHHHHHHHH
Confidence 223445678888888777654
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.16 E-value=7.9 Score=34.22 Aligned_cols=54 Identities=11% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+.|+++++.+....-.+..|.|...-..|++.+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455666666666666555566667777777777777777777777666666554
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.63 E-value=52 Score=30.20 Aligned_cols=82 Identities=13% Similarity=-0.048 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLV 483 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 483 (546)
-|+.....+...|.+.+++.+|...|- .|-.++...|..++..+...+...++ |...-.. +
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa-V 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA-V 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH-H
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH-H
Confidence 366666777788888888888877762 23334446665555554444332221 1111122 2
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 009011 484 RGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~ 504 (546)
-.|.-.++...|..+++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334456777777776665553
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.05 E-value=64 Score=30.50 Aligned_cols=243 Identities=9% Similarity=-0.059 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHH-
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-GFSP---DVVSYTCFIEHYCRE-KDFRKVDDTLKEMQEKGCKPSVITY- 339 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~~~- 339 (546)
......|...|.+.|+.++..+++.....- +.-+ .......+++.+... +..+.-.++..+..+.... +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456778899999999999999888876532 1111 233456777777664 3444445555554432111 11123
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH
Q 009011 340 -----TIVMHALGKAKQINEALKVYEKMKSDDCLP-----DTSFYSSLIFILSKAGRVKDANEIFEDMKKQ--GVVPNVL 407 (546)
Q Consensus 340 -----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 407 (546)
..++..|...|++.+|.+++..+.+.=-.. -..+|..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 257788899999999988888887631111 1345666677888899999999998877542 2224443
Q ss_pred HHHHH----HHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH---H--HHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCCH
Q 009011 408 TYNTM----ISSAC-ARSEEENALKLLQKMEEDLCKPDCE---T--YAPLLKMCCRKKRMKVLNFLLT-HMFKNDVSMDA 476 (546)
Q Consensus 408 ~~~~l----i~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~---~--~~~ll~~~~~~g~~~~a~~~~~-~m~~~~~~~~~ 476 (546)
.-..+ ...+. ..+++..|...|-+..+.=-..+.. . .-.++.+.. .++..+...++. .....-..|..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-LGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-cCCHHHHHHHhccccccccCCccH
Confidence 32221 22345 6889999988877664220011111 1 111222222 233333333322 21111134455
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
..+..++.+| ..+++.+...+++.... .+..|..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 5555555554 45777777776666533 2444554
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.97 E-value=18 Score=26.31 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
..++|..+-+.+...+. ...+-.+-+..+.+.|++++|..+.+... .||...|-++.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554432 22222222334555666666655544432 356555555443 34556666665555
Q ss_pred HHHHCC
Q 009011 431 KMEEDL 436 (546)
Q Consensus 431 ~m~~~~ 436 (546)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.68 E-value=35 Score=26.82 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 438 KPDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 438 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.|+..+--.+..++.+..+ ..++..+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444445555443 3345556666555443333444455556666666666666666666643
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.29 E-value=43 Score=32.17 Aligned_cols=62 Identities=6% Similarity=-0.079 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKY--GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFK 259 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 259 (546)
.++..+...|.+.|++++|.+.|.++... +...-...+-..+..+...+++..+...+.++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35556677777777777777777777542 222334455556666666666666666665553
No 271
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=70.45 E-value=54 Score=28.59 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 178 CLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 178 ~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
..+..+|..+...+.+..+..-+..++..+......++...+|+.+
T Consensus 129 ~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~ 174 (256)
T 2jul_A 129 TYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLY 174 (256)
T ss_dssp HHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 3455666665543334455555555555444333334455555554
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.08 E-value=41 Score=28.21 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 422 EENALKLLQKMEEDLCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
..++.++|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555544443222 2334444444445555555555555555544444
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.45 E-value=52 Score=30.59 Aligned_cols=26 Identities=4% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
....+|.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 35667778888888888888887764
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.24 E-value=32 Score=25.03 Aligned_cols=49 Identities=2% Similarity=-0.079 Sum_probs=20.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 312 CREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
...|++++|..+.+.+ +.||...|.++.. .+.|..+++...+..+...|
T Consensus 50 mNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555554433322 2444444433322 24444444444444444443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.71 E-value=59 Score=27.24 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=54.7
Q ss_pred CCCCCCHHHHH---HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 009011 155 TGYMHTPEMYN---TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD 231 (546)
Q Consensus 155 ~g~~~~~~~~~---~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (546)
..|+-|+.-.. ..++.+ .+++...+.++|..|...+-+......|..-...+-..|++.+|.++|+.-.+.+..|-
T Consensus 71 ~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45566654333 333333 25557789999999988774556677777788888889999999999998888776774
Q ss_pred H
Q 009011 232 T 232 (546)
Q Consensus 232 ~ 232 (546)
.
T Consensus 150 ~ 150 (202)
T 3esl_A 150 N 150 (202)
T ss_dssp H
T ss_pred H
Confidence 3
No 276
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=61.18 E-value=1.1e+02 Score=29.51 Aligned_cols=126 Identities=9% Similarity=0.056 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 009011 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIM 204 (546)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li 204 (546)
+++..+...+...-++++.|+++-. +.|++--...|..-.+.+...|++++|-++-...++ + ..-+..|.+.+-
T Consensus 329 v~e~~ivpyi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-g-iLRt~~Ti~rFk 402 (494)
T 1bpo_A 329 VEEENIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-G-ILRTPDTIRRFQ 402 (494)
T ss_dssp ECTTTHHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-G-SSCSHHHHHHHT
T ss_pred EccccchhhhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-c-cccCHHHHHHHh
Confidence 4443333333333345555544433 245666667777788889999999999999888776 5 667788876665
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE 257 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 257 (546)
..=...|...--+.+|..+.+.| ..+..--..+++.....|+.+-.++++.+
T Consensus 403 ~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 403 SVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp TSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 55555567777888888888776 55655555566666667777766665543
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.20 E-value=49 Score=24.11 Aligned_cols=50 Identities=4% Similarity=0.048 Sum_probs=21.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 311 YCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
+...|++++|..+.+.+ +.||...|.++.. .+.|..+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 33445555554444332 2444444433322 24444444444444444443
No 278
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.58 E-value=32 Score=31.89 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhc
Q 009011 512 STYKMLEEKLEKK 524 (546)
Q Consensus 512 ~~~~~l~~~~~~~ 524 (546)
..|.-+++.|...
T Consensus 273 ~~~~pll~~~~~~ 285 (339)
T 1ug3_A 273 KARAKLLQKYLCD 285 (339)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCC
Confidence 3466777777743
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.58 E-value=89 Score=27.01 Aligned_cols=22 Identities=27% Similarity=0.119 Sum_probs=12.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 009011 377 LIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 377 li~~~~~~g~~~~A~~~~~~~~ 398 (546)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3555556666666666666554
No 280
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=54.49 E-value=31 Score=24.84 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=39.0
Q ss_pred ChHHHHHHHhcCCCCCCHHHHHHHHHhhcC-ChhHHHHHHHHHH---hCCCCCCCHHHHHHH
Q 009011 110 SPDKVVEALKGCGVSVSNSLVEQTLRRFSN-DLTPAFGFFTWAK---TQTGYMHTPEMYNTM 167 (546)
Q Consensus 110 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~a~~~f~~~~---~~~g~~~~~~~~~~l 167 (546)
+++++.+++...|+.++...+.+.+..|.. +.+...-+..|+. ...|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 467788899999999999999888887743 2233233445553 345666776665544
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.82 E-value=85 Score=24.93 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 458 KVLNFLLTHMFKNDVSM-DAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 458 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
+.+..+|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34777888887766543 35567777777888888888888888888887777443
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.60 E-value=15 Score=32.42 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=10.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 009011 419 RSEEENALKLLQKMEEDLCKPD 440 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~p~ 440 (546)
.+......++++.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3444334445555555554433
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.29 E-value=59 Score=28.13 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELNN-GYV----SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
---++++....++++|.+++++..+.-. ... ........+..-.....-.-+..+.+++.. ..+.......+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 4568889999999999999988765320 110 001111222222222222223333333321 34445555555
Q ss_pred HHHHccCCHHHHHHHHHH
Q 009011 240 DTLVKGNSVEHAYKVFLE 257 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~ 257 (546)
..+.+.|+-++|.++|-+
T Consensus 99 ~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHH
Confidence 666666666666666644
No 284
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=49.08 E-value=1e+02 Score=24.74 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcC-CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 161 PEMYNTMVDVLGKS-KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 161 ~~~~~~ll~~~~~~-~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
..-+..++..++.. ..-..+..+|+.+...+.+..+..-+..++.........++...+|+.+
T Consensus 38 ~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~ 101 (183)
T 1s6c_A 38 EETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 101 (183)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 33333444433322 2334555566666543334455555555555444433334455555554
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.03 E-value=1.7e+02 Score=27.09 Aligned_cols=24 Identities=4% Similarity=0.144 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMD 188 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~ 188 (546)
..+|.-|-..++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 556666666666666666666653
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.21 E-value=12 Score=31.04 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=8.2
Q ss_pred HHcCCChHHHHHHHH
Q 009011 171 LGKSKKFCLMWELVK 185 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~ 185 (546)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344566665555554
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.91 E-value=75 Score=28.83 Aligned_cols=59 Identities=5% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD--FRKVDDTLKEMQE 329 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~ 329 (546)
...++.-|...|+.++|...++++......|. ....++......++ .+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~--~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSG--VPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGG--HHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 45678888888999998888887643222111 12233333333333 2344555666653
No 288
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=45.01 E-value=69 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=19.2
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
..++...+...|..++...+..+++.+.
T Consensus 42 ~~e~~~~l~~~~~~~~~~~~~~l~~~~d 69 (161)
T 3fwb_A 42 YHELKVAMKALGFELPKREILDLIDEYD 69 (161)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 4456666667777777777777777663
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.76 E-value=40 Score=29.58 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 009011 381 LSKAGRVKDANEIFEDMKKQGVVPNVLT--YNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 430 (546)
.+..+......++++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3445665555666777777776554321 1122333445566554444443
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.21 E-value=2.4e+02 Score=30.40 Aligned_cols=108 Identities=7% Similarity=-0.041 Sum_probs=68.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------------
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS------------------- 298 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------------- 298 (546)
++..|...|..+-+.++ ..-.+.++..-..+..+|...|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL----~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHH----GGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHH----HhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcc
Confidence 45556666776655443 333445655556777778888888888888875431 111
Q ss_pred ----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcC
Q 009011 299 ----PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVI----TYTIVMHALGKAK 350 (546)
Q Consensus 299 ----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----~~~~li~~~~~~g 350 (546)
....-|..++..+-+.+.++.+.++-+...+.-..-|.. .|..+.++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 012257889999999999999999888888653222332 4666666666544
No 291
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.09 E-value=1e+02 Score=24.31 Aligned_cols=59 Identities=19% Similarity=0.082 Sum_probs=31.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCh
Q 009011 467 MFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526 (546)
Q Consensus 467 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 526 (546)
+.+.|.+++ .--..++..+...+..-.|.++++.+.+.+...+..|....++.+...|.
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 444555432 23334445555555566666666666666555566665555666655554
No 292
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.43 E-value=2.8e+02 Score=28.23 Aligned_cols=287 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHHHhhhCC--CCCCHHHHH
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLV-------RGGRYDDAVEAFRGMKKYG--VEKDTRALS 236 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~~~--~~~~~~~~~ 236 (546)
.+|-.|.|+|.+++|.++.++... . .......+...+..|+ ....-++...-|++..+.. ..|=..+.-
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~-~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY 234 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKA-N-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVY 234 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGG-G-C-----CHHHHHHHC------------------------------CHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-h-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 237 VLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR-----------KVDDAQKAMKEMFQQGFSPDVVSYT 305 (546)
Q Consensus 237 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~ 305 (546)
.++..| ++...-...+..+..-|--+=-..++.+ -+++..+.+.+.-+.-+.+
T Consensus 235 ~Iig~c----------D~~~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------ 298 (661)
T 2qx5_A 235 KLIGRC----------DLSRKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------ 298 (661)
T ss_dssp HHHHTC----------CGGGCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------
T ss_pred HHHhcc----------cccccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 009011 306 CFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK-- 383 (546)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 383 (546)
.....+.-.|+++.|.+++-.. ...+.+.+.+.+.-|+-.+- =+.+......-...-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHh
Q ss_pred -cCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHCCCCCCH------HHH
Q 009011 384 -AGRVKDANEIFEDMKKQG-VVPNVLTYNTMISSACARSEEENAL-----------KLLQKMEEDLCKPDC------ETY 444 (546)
Q Consensus 384 -~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~~~~~p~~------~~~ 444 (546)
..+..+|.+.|--+...+ ..-....+.++-......++++.-+ .++++.... +..+. ...
T Consensus 368 ~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i~ 446 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTIT 446 (661)
T ss_dssp TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHHH
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 445 APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 445 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.....-+...|+++.|..+|.. .|+++.|++++.....
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~L----------------------a~~~d~vl~lln~~Ls 484 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQL----------------------AEEYDIVITLVNSLLS 484 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH----------------------hcCHHHHHHHHHHHHH
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.00 E-value=1.3e+02 Score=23.89 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 009011 179 LMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD 231 (546)
Q Consensus 179 ~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (546)
++.++|..|..++-+......|..-...+-..|++.+|.++|+.-.+.+..|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 37778888877663445566677777777788888888888888777666663
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.98 E-value=1.4e+02 Score=24.13 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009011 459 VLNFLLTHMFKNDVSM-DAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHST 513 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 513 (546)
....+|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|-...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3666788887766643 355677777778888888888888888888887776543
No 295
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=41.86 E-value=55 Score=25.19 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 112 DKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
.++...|...|..++...+..+++.+.
T Consensus 26 ~el~~~l~~~g~~~~~~~~~~~~~~~d 52 (143)
T 2obh_A 26 KELKVAMRALGFEPKKEEIKKMISEID 52 (143)
T ss_dssp GGHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 456666777788888888777777653
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.74 E-value=13 Score=31.87 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=6.8
Q ss_pred HhcCChHHHHHHHHH
Q 009011 452 CRKKRMKVLNFLLTH 466 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~ 466 (546)
.+.|+.+.+..+++.
T Consensus 218 ~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 218 KQRKNVWMINHLQEA 232 (240)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHh
Confidence 444454444444443
No 297
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.30 E-value=1.5e+02 Score=24.46 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 335 SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
+...-...+.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.+. .++...+..+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 4444444444444444432 2223333332 2344444445555555544 23333333333
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.01 E-value=1.2e+02 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=9.6
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 009011 307 FIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m 327 (546)
++.-|...|+.++|...++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.90 E-value=1.4e+02 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 009011 306 CFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m 327 (546)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444454555555555555544
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.79 E-value=2.6e+02 Score=26.82 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009011 316 DFRKVDDTLKEMQEK--------GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRV 387 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 387 (546)
..++...+++..... ++..+......++.. -.|+...+..+++.+.......+ .|..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~-------------~~~~ 230 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDD-------------SGKR 230 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCT-------------TSCE
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhccccc-------------CCCC
Confidence 355666667666543 234455666655555 46788888888777654321000 0000
Q ss_pred HHHHHHHHHHHHCCC---CCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 009011 388 KDANEIFEDMKKQGV---VPNVLTYNTMISSA---CARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR----- 456 (546)
Q Consensus 388 ~~A~~~~~~~~~~~~---~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----- 456 (546)
.--.+.+++...... ..+...+..++.++ .+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|.
T Consensus 231 ~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a 310 (447)
T 3pvs_A 231 VLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRA 310 (447)
T ss_dssp ECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHH
T ss_pred ccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhH
Confidence 000111222221110 01111222233433 3467899999999999998876665555555555554443
Q ss_pred hHHHHHHHHHHHhCCC
Q 009011 457 MKVLNFLLTHMFKNDV 472 (546)
Q Consensus 457 ~~~a~~~~~~m~~~~~ 472 (546)
...|...++....-|.
T Consensus 311 ~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 311 MQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHhCC
Confidence 2344444444444443
No 301
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.52 E-value=1.7e+02 Score=24.42 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=16.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 419 RSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 451 (546)
..+++.|+-++-+|++.|..|....-..++.+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445555555555555555444433333333333
No 302
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.44 E-value=1.7e+02 Score=24.41 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=17.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
..|.+.|+-.+.+|++.|..|.-..-..++.+.-.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 35556666666666666555544444444444333
No 303
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=39.34 E-value=1.1e+02 Score=29.26 Aligned_cols=29 Identities=3% Similarity=0.200 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhcC
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFSN 139 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 139 (546)
..++...|...|..++...+..+++.+..
T Consensus 321 ~eELk~aLrsLG~~~TeeEI~~Lf~~~D~ 349 (440)
T 3u0k_A 321 TKELGTVMRSLGQNPTEAELQDMINEVDA 349 (440)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 45677778888999999888888887754
No 304
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=39.25 E-value=1.7e+02 Score=24.58 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=17.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
..+.+.|+-++-+|++.|-.|....-..++.+.-.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34556666666666665555444444444444333
No 305
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=39.22 E-value=86 Score=24.72 Aligned_cols=28 Identities=7% Similarity=0.242 Sum_probs=18.8
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
..++...+...|..++...+..++..+.
T Consensus 47 ~~el~~~l~~~~~~~~~~~~~~~~~~~d 74 (169)
T 3qrx_A 47 AKELKVAMRALGFEPKKEEIKKMISEID 74 (169)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 3456666666777777777777777663
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.17 E-value=1.7e+02 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=18.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009011 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 350 (546)
..+.+.|+-.+.+|.+.| .|.-..-..++.+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 355666666666666666 444333344444443333
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.90 E-value=1.3e+02 Score=27.26 Aligned_cols=58 Identities=5% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHH
Q 009011 235 LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV--DDAQKAMKEMF 293 (546)
Q Consensus 235 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~ 293 (546)
...++.-|...|+.++|...++++.... ........++......++- +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~-~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE-MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG-GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4567888888999999999998875421 1222333444444444432 23444555554
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.58 E-value=1.8e+02 Score=24.72 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 009011 178 CLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK 230 (546)
Q Consensus 178 ~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (546)
+.+.++|..|...+-+......|..-...+-..|++.+|.++|+.-.+.+..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566777776655334455566666666667777777777777766655555
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.24 E-value=1.3e+02 Score=22.94 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR--MKVLNFLLTHMFKNDVS 473 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~ 473 (546)
....++.-|...|+.++|...++++..... -.......+..++-+.++ .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345677778888888888888888742111 112233333334444322 34555666666655443
No 310
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=37.77 E-value=80 Score=24.32 Aligned_cols=26 Identities=4% Similarity=0.219 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhh
Q 009011 112 DKVVEALKGCGVSVSNSLVEQTLRRF 137 (546)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~l~~~ 137 (546)
.++...+...|..++...+..+++.+
T Consensus 30 ~el~~~l~~~g~~~~~~~~~~l~~~~ 55 (148)
T 1exr_A 30 KELGTVMRSLGQNPTEAELQDMINEV 55 (148)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34445555556666666666665554
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.11 E-value=1.6e+02 Score=23.65 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH
Q 009011 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR 233 (546)
Q Consensus 155 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 233 (546)
..+.-|+.-...-|..--.+ +.+.++|..|..++-+......|..-...+-..|++.+|.++|+.-.+.+..|-..
T Consensus 57 ~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 57 KRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp GGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 44555554433333222222 34677888888866445556677777778888899999999998888877677543
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.91 E-value=1.4e+02 Score=23.19 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=24.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 385 (546)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444432 22333344334444445555555544443334443333344444443
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.82 E-value=2.9e+02 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=11.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 009011 349 AKQINEALKVYEKMKSDDCLP 369 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~ 369 (546)
.++.+.|+.++.+|.+.|..|
T Consensus 268 gsd~daAl~~la~ml~~Gedp 288 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDP 288 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 345555555555555555443
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.12 E-value=1e+02 Score=24.12 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=28.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCh
Q 009011 467 MFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526 (546)
Q Consensus 467 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 526 (546)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|....++.+...|.
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33445443322 223334444444455566666666555544555555555555555543
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.88 E-value=1.9e+02 Score=24.11 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 418 ARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK 455 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 455 (546)
+..+++.|+-++-+|++.| .|....-..++.+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 444333334444444433
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.63 E-value=1e+02 Score=20.97 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChh
Q 009011 467 MFKNDVSMDAGTYASLVRGLIESG-KLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 467 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|..
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 444555554433 33444444443 4555667777776666556666666666666666543
No 317
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.60 E-value=1.9e+02 Score=23.86 Aligned_cols=107 Identities=13% Similarity=-0.005 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 335 SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMIS 414 (546)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 414 (546)
+...-...+.++.+.++.+. ...+..+.+ .++..+-...+.++.+.|..+ +...+..+.+ .++...-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 44444455555555555332 233333332 245555555666666665533 3333333333 245555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 453 (546)
++.+.+. .++...+..+.+. ++...-...+.++.+
T Consensus 166 aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 6665555 3444444444442 344444444444443
No 318
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.35 E-value=17 Score=31.06 Aligned_cols=7 Identities=14% Similarity=-0.021 Sum_probs=2.9
Q ss_pred hcCChHH
Q 009011 453 RKKRMKV 459 (546)
Q Consensus 453 ~~g~~~~ 459 (546)
..|+.+.
T Consensus 186 ~~~~~~~ 192 (240)
T 3eu9_A 186 LAGNTTV 192 (240)
T ss_dssp HHTCHHH
T ss_pred HcCCHHH
Confidence 3444443
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.05 E-value=1.3e+02 Score=23.86 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR--MKVLNFLLTHMFKNDVS 473 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~ 473 (546)
..+.++.-|...|+.++|...++++.... .-.......+..++-+.++ .+.+..++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45677888888899999999998884211 1112333344444444322 34566666666665544
No 320
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=32.72 E-value=82 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 112 DKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
.++...+...|..++...+..+++.+.
T Consensus 26 ~el~~~l~~~~~~~~~~~~~~l~~~~d 52 (142)
T 2bl0_C 26 EGLQTVLKQFGVRVEPAAFNEMFNEAD 52 (142)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 345555555677777777666666653
No 321
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=32.08 E-value=1.4e+02 Score=23.75 Aligned_cols=28 Identities=4% Similarity=0.210 Sum_probs=17.3
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
..++...+...|..++...+..+++.+.
T Consensus 30 ~~e~~~~l~~~~~~~~~~~~~~l~~~~D 57 (179)
T 2f2o_A 30 TKELGTVMRSLGQNPTEAELQDMINEVD 57 (179)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 3455555666677777766666666553
No 322
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.71 E-value=2.3e+02 Score=23.81 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 419 RSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 451 (546)
..+++.|+-++-+|++.|..|....-..++.+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345555555555555555444433333333333
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.64 E-value=1.1e+02 Score=23.54 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 491 KLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKR 525 (546)
Q Consensus 491 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 525 (546)
..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444443
No 324
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=31.06 E-value=1.1e+02 Score=23.30 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=19.0
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
..++...+...|..++...+..+++.+.
T Consensus 30 ~~e~~~~l~~~~~~~~~~~~~~l~~~~d 57 (147)
T 4ds7_A 30 ASELATVMRSLGLSPSEAEVADLMNEID 57 (147)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhc
Confidence 4455666666777777777777777663
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.81 E-value=1.4e+02 Score=23.90 Aligned_cols=45 Identities=7% Similarity=0.121 Sum_probs=20.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHccCC
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKY--GVEKDTRALSVLMDTLVKGNS 247 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 247 (546)
++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444444455555555443 333444444444444444443
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.75 E-value=1.6e+02 Score=22.59 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
.-.|.++++.+.+.+...+..|...-++.+...
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 344444444444443333333333333333333
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.71 E-value=1e+02 Score=24.10 Aligned_cols=58 Identities=12% Similarity=-0.035 Sum_probs=30.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCh
Q 009011 467 MFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526 (546)
Q Consensus 467 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 526 (546)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|....++.+...|.
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 33455554432 223334444444 55666666666666555566665555555555553
No 328
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.67 E-value=1.5e+02 Score=21.35 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 009011 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM-----ISKGIVPYHSTYKML 517 (546)
Q Consensus 460 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~~~~~l 517 (546)
+..+.++....|+.|+..+...++..|...+- + +.++.++. ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 44555555556666666666666666665553 1 22222221 123666666655544
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.49 E-value=93 Score=26.56 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 354 EALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
...++|..|...|+- --...|......+...|++.+|.++|+.-++.+-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 333444444444433 22334444444444455555555555544443333
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.42 E-value=3.7e+02 Score=25.96 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=28.8
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS 236 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 236 (546)
..+.+.|.++-.+. + .+-....|..-...+...|++++|.++--.-.+ |+-.+..|.+
T Consensus 342 l~n~~lA~~lA~R~---~-LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~ 399 (494)
T 1bpo_A 342 LQNPDLALRMAVRN---N-LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIR 399 (494)
T ss_dssp TCCHHHHHHHHHHT---T-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHH
T ss_pred cCCHHHHHHHHHhc---C-CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHH
Confidence 35555555444322 2 444455555555666666666666655544432 3344444443
No 331
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=29.68 E-value=1.1e+02 Score=23.82 Aligned_cols=27 Identities=4% Similarity=0.156 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 112 DKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
.++...+...|..++...+..+++.+.
T Consensus 40 ~e~~~~l~~~~~~~~~~~~~~~~~~~d 66 (162)
T 1top_A 40 KELGTVMRMLGQNPTKEELDAIIEEVD 66 (162)
T ss_dssp GGHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 456666666777888877777777664
No 332
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.53 E-value=1.2e+02 Score=25.50 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g 296 (546)
..++.|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344444444444444444433
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.48 E-value=94 Score=24.94 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 009011 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL 190 (546)
Q Consensus 144 a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 190 (546)
++..+....++.|++.+..= ..+++.+...+..-.|.++++.+.+.
T Consensus 16 ~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 16 LLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 33444444444555554432 23444444444455555555555543
No 334
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.38 E-value=5.5e+02 Score=27.39 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 375 SSLIFILSKAGR---VKDANEIFEDMKKQG----VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 375 ~~li~~~~~~g~---~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
..++...|+.|. .+.|.+.|+.....+ +.||... .+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345555666665 345666666655421 3444332 12222234455555555555555432 33333456
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 009011 448 LKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 448 l~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+.+++...+.+...++++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHhCCCCCHHHHHHHHHHHhC
Confidence 6666666666666666666554
No 335
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=29.06 E-value=68 Score=22.04 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=37.3
Q ss_pred ChHHHHHHHhcCCCCCCHHHHHHHHHhhcC-ChhHHHHHHHHHH---hCCCCCCCHHHH
Q 009011 110 SPDKVVEALKGCGVSVSNSLVEQTLRRFSN-DLTPAFGFFTWAK---TQTGYMHTPEMY 164 (546)
Q Consensus 110 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~a~~~f~~~~---~~~g~~~~~~~~ 164 (546)
+.+++.+++...|+.++...+.++...|.. +.+..--+..|+. ...|..|+..+.
T Consensus 4 s~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~~L 62 (78)
T 4e2i_2 4 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEIL 62 (78)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTTTT
T ss_pred CHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 456778889999999999888888887743 3333344555653 445666666554
No 336
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.59 E-value=83 Score=26.51 Aligned_cols=15 Identities=7% Similarity=0.197 Sum_probs=6.7
Q ss_pred HhcCChHHHHHHHHH
Q 009011 452 CRKKRMKVLNFLLTH 466 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~ 466 (546)
++.|+.+.+..+++.
T Consensus 205 ~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344454444444443
No 337
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.00 E-value=1e+02 Score=26.01 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=6.7
Q ss_pred hcCChhHHHHHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQ 328 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~ 328 (546)
..|+.+.+..+++.+.
T Consensus 18 ~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444444444444333
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.89 E-value=1.2e+02 Score=23.87 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCh
Q 009011 491 KLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526 (546)
Q Consensus 491 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 526 (546)
..-.|.++++.+.+.+...+..|....++.+...|.
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 444555555555555544555555555555555443
No 339
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.85 E-value=38 Score=27.90 Aligned_cols=13 Identities=0% Similarity=0.176 Sum_probs=6.1
Q ss_pred HccCCHHHHHHHH
Q 009011 243 VKGNSVEHAYKVF 255 (546)
Q Consensus 243 ~~~g~~~~a~~~~ 255 (546)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3445555444444
No 340
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.51 E-value=2.5e+02 Score=22.80 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHhcCC
Q 009011 370 DTSFYSSLIFILSKAGR 386 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~ 386 (546)
+..+-...+.++.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444544444
No 341
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.43 E-value=3.8e+02 Score=24.87 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCC
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCREKD--FRKVDDTLKEMQEKGCKP 334 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p 334 (546)
....++.-|...|++++|...++++.. |+ ......++......++ .+.+-.++..+...|+-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 457788889999999999999888853 32 1222333333344333 244556666666665543
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.42 E-value=42 Score=29.17 Aligned_cols=55 Identities=7% Similarity=-0.007 Sum_probs=29.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--hcCChhHHHHHHHHH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVS-------YTCFIEHYC--REKDFRKVDDTLKEM 327 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-------~~~li~~~~--~~g~~~~a~~l~~~m 327 (546)
+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445566777776667776666555444222 233333321 456666666666554
No 343
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.37 E-value=2.2e+02 Score=22.25 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=21.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 350 (546)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444445555555555555544444444444444444444
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.81 E-value=1.5e+02 Score=23.16 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 385 (546)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344555555544443333333333334444333
No 345
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.59 E-value=57 Score=29.00 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=4.8
Q ss_pred hcCCHHHHHHHH
Q 009011 348 KAKQINEALKVY 359 (546)
Q Consensus 348 ~~g~~~~a~~~~ 359 (546)
..|+.+-+.-++
T Consensus 170 ~~g~~~~v~~Ll 181 (285)
T 3kea_A 170 KNGHVDMMILLL 181 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcChHHHHHHHH
Confidence 344444333333
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.30 E-value=1.8e+02 Score=22.85 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 385 (546)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33445555555554443334443333344444444
No 347
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.22 E-value=1.7e+02 Score=23.83 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=9.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 009011 348 KAKQINEALKVYEKMKSDDCL 368 (546)
Q Consensus 348 ~~g~~~~a~~~~~~~~~~~~~ 368 (546)
..|+.+.-.++.+.+.+.|..
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCC
T ss_pred HcCCcchHHHHHHHHHHCCCC
Confidence 344444334444444444443
No 348
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.82 E-value=48 Score=29.50 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=92.1
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
+..+..+..+++..- .-...|.. -.+.+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+
T Consensus 8 ~~~~~~~v~~lL~~~-~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK-DTFKADVH-GHSASYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGCCHHHHHHHHHST-TTTCCCTT-SCCHHHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred HhcCHHHHHHHHHhC-CCCccCCC-CCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 345556666665432 11112222 223455556677776554444 344333322112334455566776544433
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 324 LKEMQEKGCKPS---VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT---SFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 324 ~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
.+.|..++ ....+.+ ...+..|+.+-+..+++. |..++. .-+...+...+..|+.+-+ +.+
T Consensus 82 ----l~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~L 148 (285)
T 3kea_A 82 ----LFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYF 148 (285)
T ss_dssp ----HHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHH
T ss_pred ----HHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHH
Confidence 34454433 2222233 333456776655544443 332221 1112334444556665443 333
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 009011 398 KKQGVVP-NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDA 476 (546)
Q Consensus 398 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (546)
.+.|..+ +...-.+.+...+..|..+-+..+++.-..... .+..-.+..+...+..|+.+ +.+.+.+.|..++.
T Consensus 149 l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 149 LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYS 223 (285)
T ss_dssp HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTT
T ss_pred HhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCC
Confidence 4444332 110222334444566777666655554333221 12222233233344455543 34444555665554
Q ss_pred H
Q 009011 477 G 477 (546)
Q Consensus 477 ~ 477 (546)
.
T Consensus 224 ~ 224 (285)
T 3kea_A 224 A 224 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 349
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.72 E-value=89 Score=28.36 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKE 186 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~ 186 (546)
+..+..-++.|+++.+..+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC
Confidence 3445555677787776666653
No 350
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=25.39 E-value=2.3e+02 Score=21.67 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=47.9
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhcCChhH---HHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTP---AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEM 187 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~---a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m 187 (546)
..++...+...|..++...+..++..+..+... -..|..++... .......+...++|+.+
T Consensus 29 ~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~----------------~~~~~~~~~l~~aF~~~ 92 (148)
T 2lmt_A 29 TRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQ----------------MRETDTEEEMREAFKIF 92 (148)
T ss_dssp GGGHHHHHHHHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHHHT----------------TTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHHH----------------hcccCcHHHHHHHHHHH
Confidence 345566666677888887777777665332111 11111111111 11112234455566666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 188 DELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
-..+.+..+..-+..++..+...-..+++.++++.+
T Consensus 93 D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 93 DRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp HSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 554445566666655555444333444555555555
No 351
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.86 E-value=1.1e+02 Score=23.28 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=25.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCh
Q 009011 482 LVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 526 (546)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444455555666666666666555556665555555555554
No 352
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.61 E-value=1e+02 Score=20.30 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRG 210 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~ 210 (546)
.++.+++.++...-+++++..+++..+ . +..+...|-.-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~-~-g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLH-R-GTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHH
Confidence 345666666666666777777777666 2 456666665555555543
No 353
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.61 E-value=3.4e+02 Score=24.54 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009011 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 430 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
+.+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...|
T Consensus 212 ~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 212 NHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 333344444444444444444444444444555555444433
No 354
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.42 E-value=3.5e+02 Score=23.42 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009011 335 SVITYTIVMHALGKAKQ-----INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTY 409 (546)
Q Consensus 335 ~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 409 (546)
+...-...+.++.+.+. ...+...+..+.. .++..+-...+.++++.|+.+ +...+..+.+ .++...-
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHH
Confidence 44444444455444431 2333344433333 345555556666666666532 3334444443 2444444
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009011 410 NTMISSACARS-EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 410 ~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 488 (546)
...+.++...| ....+...+..+.+ .++...-...+.++.+.|+.+....+...+.. ++ +-...+.++.+
T Consensus 177 ~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~ 247 (280)
T 1oyz_A 177 NWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGE 247 (280)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHh
Confidence 44444444443 12344444444443 34555555666666777655444444443332 12 22333555555
Q ss_pred cCChHHHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMIS 504 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~ 504 (546)
.|.. ++...+.++.+
T Consensus 248 i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 248 LGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HCCG-GGHHHHHHHHT
T ss_pred cCch-hhhHHHHHHHh
Confidence 5653 44555555543
No 355
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.41 E-value=6.7e+02 Score=26.73 Aligned_cols=159 Identities=11% Similarity=0.066 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 340 TIVMHALGKAKQI---NEALKVYEKMKSDD----CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTM 412 (546)
Q Consensus 340 ~~li~~~~~~g~~---~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 412 (546)
..++...|..|.. +.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++...+. .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 3466777788864 46777888776542 445533 33334445667777767777777764 345555678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHH
Q 009011 413 ISSACARSEEENALKLLQKMEEDL-CKPDCETYAPLLKMCCR-KKRMKVLNFLLTHMFK---NDVSMDAGTYASLVRGLI 487 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~ 487 (546)
+.+++...+.+...++++.....+ +++. ... .++.+... ....+.+.+.+.+=.+ .........+..+|....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888889888888888776533 3332 222 23333333 2223445555443221 111223335667777776
Q ss_pred HcCChHHHHHHHHHHHHC
Q 009011 488 ESGKLELACSFFEEMISK 505 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~ 505 (546)
..-.-++-.+-++...+.
T Consensus 843 ~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TTCCSHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHhh
Confidence 665555555555665544
No 356
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.25 E-value=2.8e+02 Score=22.23 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 009011 383 KAGRVKDANEIFEDMKKQGVVP--NVLTYNTMIS-S-----ACARSEEENALKLLQKMEE 434 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 434 (546)
..|++=+|-+++++.-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777766544334 3445555555 2 2345777777777776644
No 357
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.24 E-value=15 Score=32.16 Aligned_cols=56 Identities=9% Similarity=-0.053 Sum_probs=35.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 009011 308 IEHYCREKDFRKVDDTLKEMQEKGCKPSVI-------TYTIVMHALG--KAKQINEALKVYEKMK 363 (546)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-------~~~~li~~~~--~~g~~~~a~~~~~~~~ 363 (546)
+...++.|+.+.+..+++.+.+.|..++.. -.+.+..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 445567789998888888877776555532 2234444432 5677777776666543
No 358
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.73 E-value=2.4e+02 Score=27.93 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=36.8
Q ss_pred ccCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLS-SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
...+.+.......++...+|.+ ..--.-++..|.+.|-.+.|.++++.+-.+-+. +...| .-+..|.++|+++.+.
T Consensus 493 ~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 493 ATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred CccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 3445556666666666655544 445777888899999999999999888765443 44455 5566788888887653
No 359
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.35 E-value=2.4e+02 Score=21.18 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhh
Q 009011 112 DKVVEALKGCGVSVSNSLVEQTLRRF 137 (546)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~l~~~ 137 (546)
.++...+...|..++...+..+++.+
T Consensus 28 ~el~~~l~~~~~~~~~~~~~~l~~~~ 53 (149)
T 2mys_C 28 SQVGDIARALGQNPTNAEINKILGNP 53 (149)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34445555566777776666666554
No 360
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=22.71 E-value=2.6e+02 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=18.2
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
..++...+...|..++...+..+++.+.
T Consensus 33 ~~e~~~~l~~~~~~~~~~~~~~l~~~~D 60 (158)
T 2jnf_A 33 TDQIGIILEVLGIQQTKSTIRQLIDEFD 60 (158)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 3455556666677777777777776653
No 361
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.68 E-value=5.5e+02 Score=25.16 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC----H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS----S---QIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 232 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
...++.++..|...+.++.|..+..+.. +|.+ . .-+..+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455777777777777777777776653 2211 1 11334456666677777777777776654
No 362
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.47 E-value=5.6e+02 Score=25.14 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCH--HHH-HHHHHHHHccCCHHHHHHHHHHhhcCCCCC
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKY-GVEKDT--RAL-SVLMDTLVKGNSVEHAYKVFLEFKDCIPLS 265 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~--~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 265 (546)
...+|.+++.|...+.++.|..+..+..-- ...++. ..| -.+...+.-.+++.+|.+.+.......|++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 567788888888888888888888877410 001111 122 234455667788888888887765544433
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.40 E-value=7.4e+02 Score=26.53 Aligned_cols=109 Identities=16% Similarity=0.036 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CC
Q 009011 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ-------------------GV 402 (546)
Q Consensus 342 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~ 402 (546)
++..|...|..+-+.++... ++.+...--.+..+|...|++++|.+.|++.-.- ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 45556666666655443322 2223333334556666677777777766532100 01
Q ss_pred CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 009011 403 VP---NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC----ETYAPLLKMCCRKK 455 (546)
Q Consensus 403 ~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g 455 (546)
++ ...-|..++..+-+.+-++.+.++-+..++.--.-|. ..|..++++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 12 2236778888899999999999988888765222233 35677777766554
No 364
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.23 E-value=1e+02 Score=23.90 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=24.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCh
Q 009011 482 LVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRL 526 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 526 (546)
++..+...++.-.|.++++.+.+.+...+..|....++.+...|.
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444455566666666655555555555555555555543
No 365
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=22.23 E-value=3.5e+02 Score=22.68 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHh---hcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHH
Q 009011 125 VSNSLVEQTLRR---FSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS 201 (546)
Q Consensus 125 ~~~~~~~~~l~~---~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~ 201 (546)
++...+..+++. .......+..+|...-....-..+..-|...+..+.+...-+....+|+.+...+.+..+..-+.
T Consensus 82 Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~ 161 (229)
T 3dd4_A 82 VNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEML 161 (229)
T ss_dssp CCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHHHHH
T ss_pred cCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHHHHH
Q ss_pred HHHHHH------------HhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 009011 202 TIMRRL------------VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF 258 (546)
Q Consensus 202 ~li~~~------------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 258 (546)
.++..+ ...-..+.+..+|+.+-.. .....++.-++..+.+...+-.+.+.|+.+
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d--~dG~Is~~EF~~~~~~~~~~~~~~~~~D~~ 228 (229)
T 3dd4_A 162 DIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKN--KDGVVTIDEFIESCQKDENIMRSMQLFENV 228 (229)
T ss_dssp HHHHHHHHHCC-----------CCTHHHHHHHHHCSS--CSSBCCHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCC--CCCcEeHHHHHHHHHhCHHHHHHHHhcccc
No 366
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.13 E-value=1.1e+02 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=7.1
Q ss_pred HHHHHHHhcCCCCC
Q 009011 112 DKVVEALKGCGVSV 125 (546)
Q Consensus 112 ~~~~~~l~~~~~~~ 125 (546)
.++++.|.+.|..+
T Consensus 38 ~~~V~~LL~~Gadv 51 (337)
T 4g8k_A 38 VDLVQQLLEGGANV 51 (337)
T ss_dssp HHHHHHHHHHTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34555555545443
No 367
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.61 E-value=1.1e+02 Score=28.20 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR-SEEENALKLLQKMEEDLCK 438 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~ 438 (546)
...++.-|...|+.++|...++++...... .......+..++-+. ...+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 467888888999999998888887421110 111222222222221 1235566677777766543
No 368
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.67 E-value=3.7e+02 Score=26.70 Aligned_cols=72 Identities=8% Similarity=0.015 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
.........++..+=.-.+..-..-++..|.+.|-.+.|.++++.+....-.+...+ .-+..|.++|+++..
T Consensus 497 ~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 497 RSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred hhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 344455555554432233455566677777777778888888777765444444455 555667777776654
No 369
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=20.56 E-value=1.9e+02 Score=21.86 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=19.0
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS 138 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 138 (546)
..++...+...|..++...+..+++.+.
T Consensus 34 ~~el~~~l~~~g~~~~~~~~~~l~~~~d 61 (146)
T 2qac_A 34 IDNASYNARKLGLAPSSIDEKKIKELYG 61 (146)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 3455666667777788777777776654
No 370
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.52 E-value=1.6e+02 Score=17.96 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhcCChhHHHHHH
Q 009011 112 DKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFF 148 (546)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f 148 (546)
++.++.|.+.|+ ++..+...|+.+.++.+.|..+.
T Consensus 9 ~~~i~~L~~MGF--~~~~a~~AL~~~~~n~e~A~e~L 43 (49)
T 1ify_A 9 ETMLTEIMSMGY--ERERVVAALRASYNNPHRAVEYL 43 (49)
T ss_dssp HHHHHHHHHTTC--CHHHHHHHHHTTTSCSHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHhCCCHHHHHHHH
Confidence 345667777775 78888888888888877776543
No 371
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.49 E-value=1.5e+02 Score=22.64 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=26.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3444545555556666666666655455555555555555555543
No 372
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.30 E-value=3.6e+02 Score=24.00 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHHHHhcCChHHHHHHHH
Q 009011 204 MRRLVRGGRYDDAVEAFR 221 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~ 221 (546)
+...++.|+.+....++.
T Consensus 28 L~~A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444556666666655554
No 373
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.25 E-value=2.1e+02 Score=23.27 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=12.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC
Q 009011 309 EHYCREKDFRKVDDTLKEMQEKGCKP 334 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p 334 (546)
...+..|+.+.-.++.+.+.+.|..+
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCC
Confidence 33344454444445555555555444
No 374
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.14 E-value=59 Score=20.97 Aligned_cols=29 Identities=21% Similarity=-0.018 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 009011 178 CLMWELVKEMDELNNGYVSLATMSTIMRRL 207 (546)
Q Consensus 178 ~~a~~l~~~m~~~~~~~~~~~~~~~li~~~ 207 (546)
++|.+.|.+|.+.. ...+.-+|...|+..
T Consensus 3 eEae~aF~~lL~~~-~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKEN-QVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHT-TCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHc-CCCCCCcHHHHHHHh
Confidence 45556666665544 444444555555554
Done!