Query 009012
Match_columns 546
No_of_seqs 346 out of 2132
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 4.7E-26 1.6E-30 212.6 10.3 161 40-216 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 1.5E-25 5.2E-30 206.1 13.4 155 42-215 2-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 3.9E-25 1.3E-29 202.7 10.4 155 41-214 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 1.6E-24 5.4E-29 201.4 11.8 156 42-212 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 1.4E-24 4.9E-29 199.8 8.0 154 43-214 2-160 (164)
6 3krm_A Insulin-like growth fac 99.9 5.9E-23 2E-27 188.7 13.0 154 284-446 3-158 (163)
7 2anr_A Neuro-oncological ventr 99.9 3.3E-23 1.1E-27 193.3 11.3 160 281-446 3-177 (178)
8 1j4w_A FUSE binding protein; s 99.9 2E-22 6.9E-27 187.2 11.9 157 284-442 3-174 (174)
9 3n89_A Defective in GERM LINE 99.9 2.4E-22 8.2E-27 203.9 12.8 232 135-445 25-262 (376)
10 2jzx_A Poly(RC)-binding protei 99.9 2.6E-22 8.9E-27 183.8 10.3 154 282-444 3-159 (160)
11 2jvz_A KH type-splicing, FAR u 99.9 6.9E-22 2.4E-26 181.8 12.9 154 284-445 2-161 (164)
12 3n89_A Defective in GERM LINE 99.8 1.1E-19 3.9E-24 184.3 15.7 290 40-438 27-335 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 3.5E-18 1.2E-22 152.8 8.6 137 283-444 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 1.1E-17 3.9E-22 149.5 9.6 137 42-214 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 1.3E-15 4.3E-20 144.8 7.9 142 44-216 35-193 (219)
16 2hh2_A KH-type splicing regula 99.5 7.9E-15 2.7E-19 124.1 6.6 73 370-444 7-79 (107)
17 1dtj_A RNA-binding neurooncolo 99.5 1.3E-14 4.5E-19 115.2 6.6 73 370-444 3-75 (76)
18 2axy_A Poly(RC)-binding protei 99.5 1.1E-14 3.6E-19 114.5 5.5 70 369-445 4-73 (73)
19 2e3u_A PH-DIM2P, hypothetical 99.5 3.8E-14 1.3E-18 134.7 9.3 141 285-445 35-192 (219)
20 1zzk_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 113.6 7.9 73 368-445 5-77 (82)
21 2p2r_A Poly(RC)-binding protei 99.5 1.8E-14 6E-19 114.3 5.4 72 369-445 4-75 (76)
22 2axy_A Poly(RC)-binding protei 99.5 2.2E-14 7.6E-19 112.7 5.3 71 138-215 3-73 (73)
23 1wvn_A Poly(RC)-binding protei 99.5 2.9E-14 9.9E-19 114.8 5.7 72 369-445 5-76 (82)
24 1ec6_A RNA-binding protein NOV 99.5 2.9E-14 9.9E-19 116.1 4.7 78 370-449 3-80 (87)
25 1j5k_A Heterogeneous nuclear r 99.4 6.5E-14 2.2E-18 114.5 5.4 74 367-445 11-84 (89)
26 1x4n_A FAR upstream element bi 99.4 1.1E-13 3.7E-18 113.8 6.5 74 368-446 13-86 (92)
27 2opv_A KHSRP protein; KH domai 99.4 2.1E-13 7E-18 110.5 7.9 74 368-444 12-85 (85)
28 1dtj_A RNA-binding neurooncolo 99.4 1.5E-13 5.3E-18 108.9 6.5 74 139-214 2-75 (76)
29 2hh3_A KH-type splicing regula 99.4 1.6E-13 5.5E-18 115.5 6.9 72 370-446 11-82 (106)
30 2dgr_A Ring finger and KH doma 99.4 6.4E-14 2.2E-18 112.4 4.0 69 368-444 8-76 (83)
31 1wvn_A Poly(RC)-binding protei 99.4 1.5E-13 5.2E-18 110.6 6.1 74 137-215 3-76 (82)
32 1zzk_A Heterogeneous nuclear r 99.4 3E-13 1E-17 108.8 7.3 72 138-214 5-76 (82)
33 2p2r_A Poly(RC)-binding protei 99.4 1.5E-13 5.3E-18 108.8 5.3 72 138-214 3-74 (76)
34 1x4m_A FAR upstream element bi 99.4 1.4E-13 4.6E-18 113.8 5.1 75 367-444 12-86 (94)
35 1tua_A Hypothetical protein AP 99.4 1.7E-13 5.9E-18 126.9 5.6 143 45-214 6-160 (191)
36 2opv_A KHSRP protein; KH domai 99.4 6.8E-13 2.3E-17 107.5 7.8 75 137-214 11-85 (85)
37 1we8_A Tudor and KH domain con 99.4 8.3E-13 2.8E-17 111.2 7.2 75 369-446 14-88 (104)
38 1ec6_A RNA-binding protein NOV 99.4 3.8E-13 1.3E-17 109.5 4.9 74 140-215 3-76 (87)
39 1x4m_A FAR upstream element bi 99.4 4E-13 1.4E-17 110.9 5.1 77 136-215 11-87 (94)
40 2dgr_A Ring finger and KH doma 99.4 3.1E-13 1.1E-17 108.4 4.0 71 136-214 6-76 (83)
41 1j5k_A Heterogeneous nuclear r 99.4 4.7E-13 1.6E-17 109.3 4.9 74 136-214 10-83 (89)
42 2hh2_A KH-type splicing regula 99.3 9.4E-13 3.2E-17 111.3 6.4 73 141-215 8-80 (107)
43 1x4n_A FAR upstream element bi 99.3 9E-13 3.1E-17 108.3 6.1 74 137-215 12-85 (92)
44 1we8_A Tudor and KH domain con 99.3 8.7E-13 3E-17 111.0 5.5 82 136-220 11-92 (104)
45 2hh3_A KH-type splicing regula 99.3 1.4E-12 4.6E-17 109.8 5.9 70 140-214 11-80 (106)
46 1tua_A Hypothetical protein AP 99.3 3.5E-12 1.2E-16 118.1 8.8 140 285-444 5-160 (191)
47 2ctm_A Vigilin; K homology typ 99.3 3.3E-12 1.1E-16 105.3 7.2 73 368-446 15-87 (95)
48 2cte_A Vigilin; K homology typ 99.3 2.1E-12 7.1E-17 106.5 5.9 71 369-446 16-86 (94)
49 1vig_A Vigilin; RNA-binding pr 99.3 1.9E-12 6.4E-17 101.0 4.7 67 369-442 4-70 (71)
50 2ctl_A Vigilin; K homology typ 99.3 5.1E-12 1.7E-16 104.7 7.5 73 369-445 16-88 (97)
51 2ctm_A Vigilin; K homology typ 99.2 8.7E-12 3E-16 102.8 6.1 74 135-214 12-85 (95)
52 1vig_A Vigilin; RNA-binding pr 99.2 7.4E-12 2.5E-16 97.6 4.6 68 138-212 3-70 (71)
53 2cte_A Vigilin; K homology typ 99.2 9.5E-12 3.2E-16 102.6 5.4 74 135-215 12-85 (94)
54 2ctk_A Vigilin; K homology typ 99.2 1.3E-11 4.4E-16 103.6 5.8 71 369-446 16-86 (104)
55 2ctl_A Vigilin; K homology typ 99.2 1.9E-11 6.4E-16 101.3 6.6 73 138-214 15-87 (97)
56 2ctj_A Vigilin; K homology typ 99.1 7.6E-11 2.6E-15 97.0 5.5 71 368-445 15-86 (95)
57 2ctk_A Vigilin; K homology typ 99.1 8.2E-11 2.8E-15 98.7 4.9 70 138-214 15-84 (104)
58 2ctf_A Vigilin; K homology typ 99.0 4.3E-10 1.5E-14 93.8 7.2 68 369-446 26-94 (102)
59 2ctj_A Vigilin; K homology typ 99.0 2.6E-10 9E-15 93.7 4.7 73 135-214 12-85 (95)
60 2ctf_A Vigilin; K homology typ 99.0 7.8E-10 2.7E-14 92.2 6.2 66 139-214 26-92 (102)
61 2cpq_A FragIle X mental retard 98.9 1E-09 3.4E-14 88.6 4.1 64 368-441 13-78 (91)
62 2cpq_A FragIle X mental retard 98.7 1E-08 3.5E-13 82.7 4.5 65 136-210 11-77 (91)
63 1k1g_A SF1-BO isoform; splicin 98.6 1E-07 3.5E-12 82.9 7.7 76 369-444 6-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.5 1.8E-07 6E-12 79.7 8.0 77 369-445 11-100 (119)
65 1k1g_A SF1-BO isoform; splicin 98.5 3.3E-07 1.1E-11 79.7 7.7 77 138-214 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.4 8.1E-07 2.8E-11 75.6 8.1 78 137-214 9-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.2 5.8E-07 2E-11 78.5 2.7 74 370-443 2-100 (140)
68 3u1k_A Polyribonucleotide nucl 98.1 1.8E-06 6.3E-11 94.0 6.2 94 108-212 535-629 (630)
69 2bl5_A MGC83862 protein, quaki 98.1 1.7E-06 5.8E-11 75.6 4.8 76 140-215 2-102 (140)
70 3u1k_A Polyribonucleotide nucl 97.7 1.2E-05 4E-10 87.7 3.1 63 369-442 566-629 (630)
71 4aid_A Polyribonucleotide nucl 97.6 2.1E-05 7E-10 86.7 3.8 97 107-214 537-634 (726)
72 3v69_A Protein filia; RNA-bind 97.6 8.9E-05 3E-09 63.3 6.4 68 371-444 57-124 (140)
73 2cxc_A NUSA; transcription ter 97.4 1.7E-05 5.8E-10 69.7 -0.2 104 43-176 36-139 (144)
74 2cxc_A NUSA; transcription ter 97.4 8.1E-05 2.8E-09 65.4 4.0 104 284-406 36-139 (144)
75 3v69_A Protein filia; RNA-bind 97.1 0.00064 2.2E-08 58.1 6.0 67 142-214 58-124 (140)
76 4aid_A Polyribonucleotide nucl 97.1 0.00013 4.4E-09 80.4 1.5 66 369-445 569-635 (726)
77 2asb_A Transcription elongatio 95.9 0.0074 2.5E-07 57.5 5.2 96 293-410 126-224 (251)
78 2asb_A Transcription elongatio 95.9 0.0084 2.9E-07 57.2 5.6 98 52-180 126-224 (251)
79 1k0r_A NUSA; two component arr 95.7 0.0032 1.1E-07 63.5 2.0 98 52-180 249-347 (366)
80 1k0r_A NUSA; two component arr 95.6 0.013 4.5E-07 59.0 5.8 95 293-409 249-346 (366)
81 3cdi_A Polynucleotide phosphor 95.6 0.0034 1.2E-07 69.5 1.6 96 107-213 527-623 (723)
82 1e3p_A Guanosine pentaphosphat 95.3 0.002 6.9E-08 71.6 -1.3 94 107-212 566-660 (757)
83 1hh2_P NUSA, N utilization sub 94.2 0.065 2.2E-06 53.8 6.4 94 293-407 245-340 (344)
84 1hh2_P NUSA, N utilization sub 94.1 0.059 2E-06 54.1 6.0 96 52-178 245-341 (344)
85 3cdi_A Polynucleotide phosphor 93.7 0.011 3.9E-07 65.3 -0.1 64 369-443 559-623 (723)
86 1e3p_A Guanosine pentaphosphat 92.6 0.006 2E-07 67.8 -4.5 62 370-442 598-660 (757)
87 2pt7_G HP1451, hypothetical pr 69.8 1.7 5.7E-05 38.2 1.6 29 44-72 34-62 (152)
88 1wh9_A 40S ribosomal protein S 59.9 3 0.0001 33.3 1.2 28 45-72 37-64 (92)
89 2pt7_G HP1451, hypothetical pr 57.8 3 0.0001 36.6 0.9 65 141-214 34-98 (152)
90 1wh9_A 40S ribosomal protein S 56.3 2.9 9.9E-05 33.3 0.5 28 371-398 36-63 (92)
91 2kl8_A OR15; structural genomi 44.8 48 0.0017 24.0 5.4 28 418-445 40-67 (85)
92 3ul0_C Nuclear CAP-binding pro 41.6 26 0.0009 19.9 2.8 22 7-29 2-23 (26)
93 4hhu_A OR280; engineered prote 36.7 1.7E+02 0.0059 23.8 11.5 97 87-215 42-149 (170)
94 3gku_A Probable RNA-binding pr 35.8 10 0.00034 35.5 0.8 32 45-76 94-125 (225)
95 4hhu_A OR280; engineered prote 27.9 2.5E+02 0.0085 22.9 14.9 46 392-446 105-150 (170)
96 3j20_C 30S ribosomal protein S 26.5 22 0.00075 32.7 1.4 28 45-72 42-69 (210)
97 2xzm_C KH domain containing pr 26.2 24 0.00082 33.2 1.6 28 45-72 49-76 (243)
98 3u5c_D RP13, YS3, 40S ribosoma 26.0 19 0.00064 33.8 0.8 28 45-72 46-73 (240)
99 3u5c_D RP13, YS3, 40S ribosoma 26.0 19 0.00066 33.8 0.9 28 371-398 45-72 (240)
100 2ba0_A Archeal exosome RNA bin 26.0 73 0.0025 29.6 4.9 50 372-432 138-187 (229)
101 3gku_A Probable RNA-binding pr 25.9 14 0.00049 34.4 0.0 66 141-214 93-159 (225)
102 3iev_A GTP-binding protein ERA 25.4 19 0.00066 35.0 0.8 38 138-175 238-284 (308)
103 2z0s_A Probable exosome comple 25.2 1.1E+02 0.0039 28.3 6.2 46 45-96 150-195 (235)
104 2kl8_A OR15; structural genomi 25.2 1.4E+02 0.0047 21.6 5.0 29 188-216 40-68 (85)
105 3j20_C 30S ribosomal protein S 24.9 19 0.00064 33.2 0.6 35 371-405 41-82 (210)
106 3iev_A GTP-binding protein ERA 24.7 22 0.00075 34.6 1.1 38 368-405 238-284 (308)
107 2xzm_C KH domain containing pr 24.5 23 0.0008 33.3 1.2 29 370-398 47-75 (243)
108 2ba0_A Archeal exosome RNA bin 24.5 91 0.0031 28.9 5.3 58 142-210 138-195 (229)
109 3iz6_B 40S ribosomal protein S 23.3 19 0.00066 33.5 0.3 30 44-73 45-74 (227)
110 3dhx_A Methionine import ATP-b 23.1 98 0.0033 24.8 4.6 50 160-210 36-87 (106)
111 3iz6_B 40S ribosomal protein S 22.6 19 0.00066 33.5 0.2 28 371-398 45-72 (227)
112 3r8n_C 30S ribosomal protein S 21.6 19 0.00066 33.0 -0.0 28 45-72 63-90 (206)
113 2z0s_A Probable exosome comple 20.8 1.1E+02 0.0038 28.4 5.1 50 372-432 150-200 (235)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=4.7e-26 Score=212.58 Aligned_cols=161 Identities=24% Similarity=0.427 Sum_probs=128.2
Q ss_pred CCceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCC---CCCCcceEEEEecCCccccccccCcccCCHHHHHH
Q 009012 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDAL 116 (546)
Q Consensus 40 ~~~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~---~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~ 116 (546)
++.++++|+||.+++|.||||+|++|++|+++|+|+|+|++. .+++++|+|+|+|..++ +.+|.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A~ 69 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAVH 69 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHHH
Confidence 567999999999999999999999999999999999999753 57889999999998665 34555
Q ss_pred HHHHHHHHHhhhcCC-----------CCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCccc
Q 009012 117 FKVHDRVIAEELRGD-----------EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCA 185 (546)
Q Consensus 117 ~~i~~~i~~~~~~~~-----------~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 185 (546)
.++.+.+.+...... .........+++|+||.+++|+||||+|++|++|+++|||+|+|.++.. +.
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~ 146 (178)
T 2anr_A 70 GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GI 146 (178)
T ss_dssp HHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------
T ss_pred HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CC
Confidence 555544432110000 0001223578999999999999999999999999999999999987543 23
Q ss_pred CCCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009012 186 LRSDELVQISGEASVVKKALCQIASRLHDNP 216 (546)
Q Consensus 186 ~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~ 216 (546)
.+.++.|+|+|++++|.+|+.+|.++|+++|
T Consensus 147 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 147 NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999999875
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=206.09 Aligned_cols=155 Identities=25% Similarity=0.407 Sum_probs=129.8
Q ss_pred ceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCC-CCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHH
Q 009012 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET-VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (546)
Q Consensus 42 ~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~-~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~ 120 (546)
.-+++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+++. +.+|..+++
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~-------------v~~A~~~I~ 68 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA-------------QFKAQGRIY 68 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 4578999999999999999999999999999999999875 67889999999998766 567777777
Q ss_pred HHHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHH
Q 009012 121 DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASV 200 (546)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~ 200 (546)
+.+.+..... .......+++|+||.+++|+||||+|++|++|+++|||+|.|.++ ..|. ...++.|+|+|++++
T Consensus 69 ~~~~e~~~~~---~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 69 GKLKEENFFG---PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHTTSSC---SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHH
T ss_pred HHHhcccccc---cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHH
Confidence 7665543221 123456788999999999999999999999999999999999764 3343 133458999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 009012 201 VKKALCQIASRLHDN 215 (546)
Q Consensus 201 V~~A~~~I~~~l~~~ 215 (546)
|.+|+.+|.++|.+.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999763
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=3.9e-25 Score=202.73 Aligned_cols=155 Identities=29% Similarity=0.480 Sum_probs=128.9
Q ss_pred CceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHH
Q 009012 41 EDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (546)
Q Consensus 41 ~~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~ 120 (546)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+.++ +.+|..++.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-------------v~~A~~~I~ 67 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-------------IFKAFAMII 67 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-------------HHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-------------HHHHHHHHH
Confidence 45789999999999999999999999999999999999876 678999999998665 466777777
Q ss_pred HHHHHhhhcCCC--CCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCH
Q 009012 121 DRVIAEELRGDE--DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198 (546)
Q Consensus 121 ~~i~~~~~~~~~--~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~ 198 (546)
+.+.+....... .......++++|+||.+++|+||||+|++|++|+++|||+|+|.++ ..|. +.++.|+|+|++
T Consensus 68 ~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~---~~~~~v~I~G~~ 143 (160)
T 2jzx_A 68 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPN---STERAITIAGIP 143 (160)
T ss_dssp HHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTT---CCEEEEEEEECH
T ss_pred HHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCC---CCceEEEEEcCH
Confidence 665543221100 0122346899999999999999999999999999999999999753 3343 678999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009012 199 SVVKKALCQIASRLHD 214 (546)
Q Consensus 199 ~~V~~A~~~I~~~l~~ 214 (546)
++|.+|+.+|.+++.+
T Consensus 144 ~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 144 QSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=1.6e-24 Score=201.42 Aligned_cols=156 Identities=24% Similarity=0.403 Sum_probs=122.8
Q ss_pred ceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHH
Q 009012 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (546)
Q Consensus 42 ~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~ 121 (546)
..+++|+||.+++|.||||+|++|++|+++|+|+|+|.+..+++++|+|+|+|+.++ +.+|+.+|.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~~ 68 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-------------AQHAAEIITD 68 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-------------HHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-------------HHHHHHHHHH
Confidence 467899999999999999999999999999999999987667888999999999766 3455555544
Q ss_pred HHHHhhhcC--CC------------C---CCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcc
Q 009012 122 RVIAEELRG--DE------------D---SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184 (546)
Q Consensus 122 ~i~~~~~~~--~~------------~---~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 184 (546)
.+.+..... .. . ......++++|+||.+++|+||||+|++|++|+++|||+|+|.++. +++
T Consensus 69 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~ 146 (174)
T 1j4w_A 69 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPN 146 (174)
T ss_dssp HHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTT
T ss_pred HHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCC
Confidence 433221000 00 0 0012346899999999999999999999999999999999997642 334
Q ss_pred cCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009012 185 ALRSDELVQISGEASVVKKALCQIASRL 212 (546)
Q Consensus 185 ~~~~dr~v~I~G~~~~V~~A~~~I~~~l 212 (546)
..+.++.|+|+|++++|.+|+.+|.++|
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 4567899999999999999999998864
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=199.77 Aligned_cols=154 Identities=23% Similarity=0.376 Sum_probs=122.5
Q ss_pred eEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCC--CCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHH
Q 009012 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET--VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (546)
Q Consensus 43 ~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~--~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~ 120 (546)
++++|+||.+++|.||||+|++|++|+++|+|+|+|.+. .+++++|+|+|+|+++. +..|+..+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~ 68 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-------------VQQACEMVM 68 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-------------HHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 678999999999999999999999999999999999754 35678999999998665 356666665
Q ss_pred HHHHHhhhcC---CCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcC
Q 009012 121 DRVIAEELRG---DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGE 197 (546)
Q Consensus 121 ~~i~~~~~~~---~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~ 197 (546)
+.+.+..... ..+.......+++|+||.+++|+||||+|.+|++|+++|||+|+|.+... .+.++.|+|+|+
T Consensus 69 ~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~ 143 (164)
T 2jvz_A 69 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGP 143 (164)
T ss_dssp HHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESC
T ss_pred HHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcC
Confidence 5443221100 00001111356899999999999999999999999999999999976532 245899999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009012 198 ASVVKKALCQIASRLHD 214 (546)
Q Consensus 198 ~~~V~~A~~~I~~~l~~ 214 (546)
+++|.+|+.+|.++|++
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998865
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=5.9e-23 Score=188.72 Aligned_cols=154 Identities=21% Similarity=0.334 Sum_probs=118.6
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCC-CCCCCceEEEEecCcchhhhchHHHHHHHHhcCccccc-c
Q 009012 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSS-STEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK-I 361 (546)
Q Consensus 284 ~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~-~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~-~ 361 (546)
.+++|+||.+.+|.|||++|++|++|+++|||+|+|++. .++..+++|+|+|..... ..+...++.. +.+. .
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v---~~A~~~I~~~---~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQ---FKAQGRIYGK---LKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHH---HHHHHHHHHH---HHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHH---HHHHHHHHHH---Hhcccc
Confidence 478999999999999999999999999999999999985 356688999999964211 1122222211 1111 1
Q ss_pred ccccCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHH
Q 009012 362 ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTR 441 (546)
Q Consensus 362 ~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 441 (546)
..+.....++.+|.||.+++|+||||+|++|++|+++|||+|+|... ..|. ..+++.|+|+|++++|+.|+.+|.++
T Consensus 77 ~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~ 153 (163)
T 3krm_A 77 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYASQMAQRKIRDI 153 (163)
T ss_dssp SCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHHHHHHHHHHHHH
Confidence 11122335778999999999999999999999999999999999653 3343 23345899999999999999999999
Q ss_pred HHhcc
Q 009012 442 LRANL 446 (546)
Q Consensus 442 l~~~~ 446 (546)
|++..
T Consensus 154 i~~~~ 158 (163)
T 3krm_A 154 LAQVK 158 (163)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98743
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=3.3e-23 Score=193.25 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=120.6
Q ss_pred CccEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCC---CCCCceEEEEecCcchhhhchHHHHHHHHhcCcc
Q 009012 281 SKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS---TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRC 357 (546)
Q Consensus 281 ~~~~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~---~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~ 357 (546)
..+++++|+||.+.+|.|||++|++|++|+++|||+|+|++.. ++..+|+++|+|... .+..+.+.+..+....
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~---~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---ALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH---HHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH---HHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999999999999998643 346789999999642 2222222222221111
Q ss_pred cccc------------ccccCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEE
Q 009012 358 SEKI------------ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425 (546)
Q Consensus 358 ~~~~------------~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~ 425 (546)
.... .........+.+|+||.+++|+||||+|++|++|+++|||+|+|.+....| .+++++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v~I~ 156 (178)
T 2anr_A 80 PQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVVTVS 156 (178)
T ss_dssp CCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEE
T ss_pred CCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEEEEE
Confidence 0000 000112347889999999999999999999999999999999997654323 4678999999
Q ss_pred cCHHHHHHHHHHHHHHHHhcc
Q 009012 426 GDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 426 G~~~~v~~A~~~I~~~l~~~~ 446 (546)
|++++|+.|+.+|.++|.+++
T Consensus 157 G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999998753
No 8
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.87 E-value=2e-22 Score=187.17 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=116.4
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhchHHHHHHHHhcCcccc----
Q 009012 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSE---- 359 (546)
Q Consensus 284 ~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~---- 359 (546)
.+++|.||.+++|.|||++|++|++|+++|||+|+|++......+++++|+|.......+...+.+++........
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~ 82 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPG 82 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCC
Confidence 5789999999999999999999999999999999998765566789999999742211112222222221110000
Q ss_pred -----------ccccccCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCH
Q 009012 360 -----------KIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDL 428 (546)
Q Consensus 360 -----------~~~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~ 428 (546)
...........+.+|.||.+++|+||||+|++|++|+++|||+|+|.... |.+.++++++|+|+|++
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~v~I~G~~ 160 (174)
T 1j4w_A 83 PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKLFTIRGTP 160 (174)
T ss_dssp ---------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEEEEEECCH
T ss_pred CCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceEEEEECCH
Confidence 00000001246889999999999999999999999999999999997642 33445778999999999
Q ss_pred HHHHHHHHHHHHHH
Q 009012 429 DLAKDALIQVMTRL 442 (546)
Q Consensus 429 ~~v~~A~~~I~~~l 442 (546)
++|+.|+.+|.++|
T Consensus 161 ~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 161 QQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 9
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.87 E-value=2.4e-22 Score=203.89 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=157.2
Q ss_pred CCCCceEEEEEeeCCceeEEeccCc--hHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009012 135 DGGHQVTAKLLVPSDQIGCVIGKGG--QIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (546)
Q Consensus 135 ~~~~~~~~~llVp~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l 212 (546)
...+.+|+.+.||..++.+||||+| ++|++|+++|||+|+|+....-..........|+|+|.+++|++|+.+|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 4568899999999999999999999 99999999999999997643000001134568999999999999999988743
Q ss_pred hcCCCCcchhhcccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEEEeec
Q 009012 213 HDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPV 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~gg~~~~p~~g~~~~~~~p~~~~~gg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~vp~ 292 (546)
.+.+.+.+|.
T Consensus 105 ----------------------------------------------------------------------Pl~i~~elp~ 114 (376)
T 3n89_A 105 ----------------------------------------------------------------------HFTVFMALSK 114 (376)
T ss_dssp ----------------------------------------------------------------------EEEEEEECTT
T ss_pred ----------------------------------------------------------------------CceEEEEccc
Confidence 1234444443
Q ss_pred CcccccccCCchhHHHHHhhhCCeEEecCCCCC--CCceEEEEecCcchhhhchHHHHHHHHhcCccccccccccCCcce
Q 009012 293 ANIGGVIGKGGAIINQIRQESGAAIKVDSSSTE--GDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISF 370 (546)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~--~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (546)
..+.. ...+..|.+ ++.++++|.|+..... .....|+|+|.+.-.+. +.+|+..+...+.+. .......+
T Consensus 115 ~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~---akeA~~~Ll~~l~~~--e~~~~~~~ 186 (376)
T 3n89_A 115 MKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHE---LIEAAKRLNEILFRE--SPAPENNF 186 (376)
T ss_dssp CSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHH---HHHHHHHHHHHHCC----CCCSSCE
T ss_pred cccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHH---HHHHHHHHHHHHHhh--hcccccce
Confidence 32221 111234444 5678999998654211 12568999997643332 344433332222211 11123458
Q ss_pred eEEEEEcCCcceeEEcCCC--hhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 371 TTRLLVPTSRIGCLIGKGG--SIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG--~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
++.|.|+..+|..|||++| ..|+.|+++|||+|.++..++. .....+...|+|+|+.++|..|+.+|++.|=-.
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~-~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv~ 262 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNR-NETRGNIYEIKVVGNIDNVLKARRYIMDLLPIS 262 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTSEEE
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCc-ccccCCceEEEEEeCHHHHHHHHHHHHhhCCEE
Confidence 9999999999999999999 6679999999999999754321 100123458999999999999999998887533
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=183.85 Aligned_cols=154 Identities=25% Similarity=0.436 Sum_probs=118.2
Q ss_pred ccEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhchHHHHHHHHhcCc-cccc
Q 009012 282 KEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPR-CSEK 360 (546)
Q Consensus 282 ~~~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~-~~~~ 360 (546)
.++.++|+||.+.+|.|||++|++|++|+++|||+|+|++. +.++++++|+|... .+..+...++..... +...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~---~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---AIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHH---HHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHH---HHHHHHHHHHHHHHhhcccc
Confidence 35789999999999999999999999999999999999975 34689999999732 111222222211100 0000
Q ss_pred ccc--ccCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHH
Q 009012 361 IER--DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQV 438 (546)
Q Consensus 361 ~~~--~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I 438 (546)
... ......++.+|.||.+++|+||||+|++|++|+++|||+|+|.. +.+| .++++.|+|+|++++|+.|+.+|
T Consensus 78 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~---~~~~~~v~I~G~~~~v~~A~~~I 153 (160)
T 2jzx_A 78 MTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 153 (160)
T ss_dssp CCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---TCCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---CCCceEEEEEcCHHHHHHHHHHH
Confidence 000 01123578999999999999999999999999999999999965 3344 46789999999999999999999
Q ss_pred HHHHHh
Q 009012 439 MTRLRA 444 (546)
Q Consensus 439 ~~~l~~ 444 (546)
.+.|.+
T Consensus 154 ~~~i~e 159 (160)
T 2jzx_A 154 CVVMLE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=6.9e-22 Score=181.77 Aligned_cols=154 Identities=18% Similarity=0.320 Sum_probs=117.5
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCC--CCCCceEEEEecCcchhhhchHHHHHHHHhcCccccc-
Q 009012 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS--TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK- 360 (546)
Q Consensus 284 ~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~--~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~- 360 (546)
++++|.||.+++|.|||++|++|++|+++|||+|+|++.. +...+++++|+|... .+..+.+.+..+.......
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~---~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPY---KVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHH---HHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHH---HHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999997643 345688999999642 2223334443332221100
Q ss_pred ccc--c-cCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHH
Q 009012 361 IER--D-SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQ 437 (546)
Q Consensus 361 ~~~--~-~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~ 437 (546)
... + .....++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.+ + .+.++.|+|+|++++|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~ 153 (164)
T 2jvz_A 79 FGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARI 153 (164)
T ss_dssp CSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHHHHHH
Confidence 000 0 001135688999999999999999999999999999999997542 1 3457899999999999999999
Q ss_pred HHHHHHhc
Q 009012 438 VMTRLRAN 445 (546)
Q Consensus 438 I~~~l~~~ 445 (546)
|.++|++.
T Consensus 154 I~~~i~~~ 161 (164)
T 2jvz_A 154 INDLLQSL 161 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998763
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.82 E-value=1.1e-19 Score=184.32 Aligned_cols=290 Identities=11% Similarity=0.110 Sum_probs=176.6
Q ss_pred CCceEEEEEecCCccceEecCCc--HHHHHHHHHhCCeEEEcCCC-----CCCcceEEEEecCCccccccccCcccCCHH
Q 009012 40 PEDTVYRYLCPIRKIGSIIGRGG--EIVKQLRIDTKSKIRIGETV-----PGSEERVVTVYSASDETNAFEDGDKFVSPA 112 (546)
Q Consensus 40 ~~~~~~rilip~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~-----~~~~ervv~I~G~~e~~~~~e~~~~~v~~a 112 (546)
...+++.+.||..+|++||||+| ++|++|+++|+|+|+|++.. +......|+|+|..++|
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enV------------- 93 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDV------------- 93 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHH-------------
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHH-------------
Confidence 67799999999999999999999 99999999999999998764 11345789999998873
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceE
Q 009012 113 QDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192 (546)
Q Consensus 113 ~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v 192 (546)
+.|..++.+ ...+++.+.+|...+.. ..-...|.+ ++..+++|.|....+.. ......|
T Consensus 94 E~AR~~I~~---------------l~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~---~~~sd~V 152 (376)
T 3n89_A 94 DRARMLMRR---------------NCHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN---GIVTTYL 152 (376)
T ss_dssp HHHHHHHHH---------------SCEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEE
T ss_pred HHHHHHHHh---------------cCCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc---CCCCCEE
Confidence 344433332 12445666666543332 111335555 67899999986642211 1124579
Q ss_pred EEEcCHHHHHHHHHHHHHHHhcCCCCcchhhcccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 009012 193 QISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLY 272 (546)
Q Consensus 193 ~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~gg~~~~p~~g~~~~~~~p~~~~~gg~~~d~~~~~~~~~~ 272 (546)
+|+|...+|.+|..++..+|+.-....
T Consensus 153 ~IrG~~~nv~~akeA~~~Ll~~l~~~e----------------------------------------------------- 179 (376)
T 3n89_A 153 RITAREKNQHELIEAAKRLNEILFRES----------------------------------------------------- 179 (376)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHCC-------------------------------------------------------
T ss_pred EEEcChhhHHHHHHHHHHHHHHHHhhh-----------------------------------------------------
Confidence 999998766655555444443310000
Q ss_pred CCCCCCCCCccEEEEEEeecCcccccccCCc--hhHHHHHhhhCCeEEecCCCCC----CCceEEEEecCcchhhhchHH
Q 009012 273 SAPRDDLSSKEFSLRLVCPVANIGGVIGKGG--AIINQIRQESGAAIKVDSSSTE----GDDCLITVSSKEFFEDTLSAT 346 (546)
Q Consensus 273 ~~~~~~~~~~~~~~~v~vp~~~~g~iIGk~G--~~Ik~i~~~sga~I~i~~~~~~----~~~rvi~I~G~~~~~~~~~~~ 346 (546)
......++..|.|+..+|..|||++| ..|++|+++|||+|.|++.... .....|+|+|.. +.+..+
T Consensus 180 -----~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~---e~V~~A 251 (376)
T 3n89_A 180 -----PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNI---DNVLKA 251 (376)
T ss_dssp -----CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCH---HHHHHH
T ss_pred -----cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCH---HHHHHH
Confidence 00123478999999999999999999 5669999999999999975331 234589999975 233334
Q ss_pred HHHHHHhcCccccccccccCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCC---ceEE
Q 009012 347 IEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDD---EMVQ 423 (546)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~---r~v~ 423 (546)
...++.+.| +...|.++.+..-.-.-.--..|-.+-++.++.|.|.++..-|..--++| ..|.
T Consensus 252 rk~I~~lLP--------------v~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (376)
T 3n89_A 252 RRYIMDLLP--------------ISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCAS 317 (376)
T ss_dssp HHHHHHTSE--------------EEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEEECCSSSSCCCEEEEEEE
T ss_pred HHHHHhhCC--------------EEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecCCCchhhcccccccceEE
Confidence 444444433 44445544432211112222233345578899999976532231000111 3477
Q ss_pred EEcC---HHHHHHHHHHH
Q 009012 424 ISGD---LDLAKDALIQV 438 (546)
Q Consensus 424 I~G~---~~~v~~A~~~I 438 (546)
|..- .-++.+|.+.+
T Consensus 318 ~~s~e~n~~~~y~~~~~~ 335 (376)
T 3n89_A 318 LRSKEFNIKKLYTAYQKV 335 (376)
T ss_dssp EEEEGGGHHHHHHHHHHH
T ss_pred EEEEeccHHHHHHHHHHH
Confidence 7774 44455554443
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.73 E-value=3.5e-18 Score=152.82 Aligned_cols=137 Identities=19% Similarity=0.275 Sum_probs=99.3
Q ss_pred cEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhchHHHHHHHHhcCccccccc
Q 009012 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362 (546)
Q Consensus 283 ~~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (546)
.++.+|.||.+.+|.+||++|++|++|++++| |.+.....+ ++ .+.+.+... ..+..+..+. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~-~~-~~i~~~~~p------~~v~~~~~~l----~--- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDED-TC-TFHIYGEDQ------DAVKKARSFL----E--- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETT-TT-EEEEEESSH------HHHHHHHHHH----C---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCC-ch-heeeccCCH------HHHHHHHHhh----h---
Confidence 46889999999999999999999999999999 444322211 23 344444210 1222221110 0
Q ss_pred cccCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCc-eEEEecCCCCCCCCCCCCc--eEEEEcCHHHHHHHHHHHH
Q 009012 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKA-NIRILPKENLPKIASEDDE--MVQISGDLDLAKDALIQVM 439 (546)
Q Consensus 363 ~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga-~I~i~~~~~~P~~~~~~~r--~v~I~G~~~~v~~A~~~I~ 439 (546)
....++.||.+++|++|||+|++|+.|++.||| +|+|.+.++... ..+++ .|+|+|++++|+.|+.+|.
T Consensus 66 ------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~ 137 (144)
T 2qnd_A 66 ------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLD 137 (144)
T ss_dssp ------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred ------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHH
Confidence 113789999999999999999999999999997 999987543211 12333 5899999999999999999
Q ss_pred HHHHh
Q 009012 440 TRLRA 444 (546)
Q Consensus 440 ~~l~~ 444 (546)
++|..
T Consensus 138 ~~l~~ 142 (144)
T 2qnd_A 138 YHLNY 142 (144)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99865
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.72 E-value=1.1e-17 Score=149.50 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=100.2
Q ss_pred ceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHH
Q 009012 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (546)
Q Consensus 42 ~~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~ 121 (546)
.++.+|+||.+.+|++||++|++|++|+++++ |.+.+.. ..++..+...++++. +..+..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~-----------------v~~~~~ 62 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDA-----------------VKKARS 62 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHH-----------------HHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHH-----------------HHHHHH
Confidence 46789999999999999999999999999999 5543221 223344333333332 222211
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCc-eEEEecCCCCCcccCCCCc--eEEEEcCH
Q 009012 122 RVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA-QIRILKDEHLPSCALRSDE--LVQISGEA 198 (546)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~dr--~v~I~G~~ 198 (546)
+.. ...+.+.||.++++++|||+|++|+.|++.||| +|+|..+++... ...++ .|+|+|++
T Consensus 63 -~l~-------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~ 126 (144)
T 2qnd_A 63 -FLE-------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTK 126 (144)
T ss_dssp -HHC-------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEH
T ss_pred -hhh-------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCH
Confidence 110 113889999999999999999999999999997 999987643211 12344 48999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009012 199 SVVKKALCQIASRLHD 214 (546)
Q Consensus 199 ~~V~~A~~~I~~~l~~ 214 (546)
++|..|..+|.++|..
T Consensus 127 ~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 127 DSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.59 E-value=1.3e-15 Score=144.84 Aligned_cols=142 Identities=22% Similarity=0.223 Sum_probs=101.8
Q ss_pred EEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHHHH
Q 009012 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123 (546)
Q Consensus 44 ~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~~i 123 (546)
..++.||.+.++.|||++|++|+.|+++|||+|.|+. +++.|+|.+....-. ...+++|...|...+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d--------~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETED--------PLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCS--------HHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCC--------HHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999952 356899998641100 011344444444322
Q ss_pred H----H--hhhcCCCCCCCCCceEEEEEee-----C------CceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009012 124 I----A--EELRGDEDSDGGHQVTAKLLVP-----S------DQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 124 ~----~--~~~~~~~~~~~~~~~~~~llVp-----~------~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
. + ..+.. .......+-++ . ..+|+||||+|.||+.|++.|||+|.|.
T Consensus 102 rg~~~e~g~~ll~------dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~---------- 165 (219)
T 2e3u_A 102 RGFSPERAFRLLN------EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY---------- 165 (219)
T ss_dssp TTCCHHHHGGGGS------TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE----------
T ss_pred ccCCccccceecc------CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC----------
Confidence 0 0 11110 01111122222 2 2689999999999999999999999984
Q ss_pred CCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009012 187 RSDELVQISGEASVVKKALCQIASRLHDNP 216 (546)
Q Consensus 187 ~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~ 216 (546)
++.|.|.|+.++|+.|..+|.++|...+
T Consensus 166 --~~~v~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 166 --GKTVAIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp --TTEEEEEECHHHHHHHHHHHHHHHTTCC
T ss_pred --CeEEEEEeCHHHHHHHHHHHHHHHcCCC
Confidence 4579999999999999999999996643
No 16
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=7.9e-15 Score=124.12 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=64.0
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 444 (546)
.+.+|+||.+++|+||||+|++||+|+++|||+|+|.... .| ..+.++++|+|+|++++|++|+.+|.++|.+
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 3788999999999999999999999999999999997642 22 2245679999999999999999999999876
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.52 E-value=1.3e-14 Score=115.15 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=64.0
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 444 (546)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+.. +++.++.|+|+|++++++.|+.+|.+.|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999997653322 256789999999999999999999998765
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.51 E-value=1.1e-14 Score=114.49 Aligned_cols=70 Identities=24% Similarity=0.460 Sum_probs=63.7
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
.++.+|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+|.|+|.|+++++..|+.+|.++|+++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 5889999999999999999999999999999999999653 245799999999999999999999999863
No 19
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.50 E-value=3.8e-14 Score=134.70 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhh-----hchHHHHHHHHhcC-ccc
Q 009012 285 SLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFED-----TLSATIEAVVRLQP-RCS 358 (546)
Q Consensus 285 ~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~~rvi~I~G~~~~~~-----~~~~~~~a~~~~~~-~~~ 358 (546)
..++.||.+.++.|||++|.+|+.|+++|||+|.++.. +..++|.+.....+ .+...+.++.+-++ ...
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g 109 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERA 109 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 67999999999999999999999999999999999842 45678887642211 11222222221110 000
Q ss_pred cccccccCCcceeEEEEEcC-----------CcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcC
Q 009012 359 EKIERDSGLISFTTRLLVPT-----------SRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD 427 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~l~VP~-----------~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~ 427 (546)
..+.. +......+.|+. ..+|+||||+|++|+.|++.|||+|.|.. ++|+|.|+
T Consensus 110 ~~ll~---dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i~G~ 174 (219)
T 2e3u_A 110 FRLLN---EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAIIGN 174 (219)
T ss_dssp GGGGS---TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEEEEC
T ss_pred ceecc---CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEEEeC
Confidence 00111 111222344332 36899999999999999999999999952 47999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 009012 428 LDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 428 ~~~v~~A~~~I~~~l~~~ 445 (546)
+++++.|..+|.++|...
T Consensus 175 ~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999999653
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.49 E-value=4.5e-14 Score=113.64 Aligned_cols=73 Identities=27% Similarity=0.470 Sum_probs=65.3
Q ss_pred cceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
+.++.+|.||.+++|+||||+|++|++|+++|||+|+|... .| +++++.|+|+|++++|+.|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999999999642 22 467899999999999999999999999863
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.49 E-value=1.8e-14 Score=114.33 Aligned_cols=72 Identities=29% Similarity=0.521 Sum_probs=65.3
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|... .++++++.|+|+|++++++.|+.+|.+.|.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 5789999999999999999999999999999999999752 23567899999999999999999999998764
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.48 E-value=2.2e-14 Score=112.65 Aligned_cols=71 Identities=28% Similarity=0.592 Sum_probs=64.8
Q ss_pred CceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 138 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
.+++++|+||.+++|.||||+|++|++|+++|||+|+|.++. ..+|+|+|+|++++|.+|+.+|.++|+++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~-------~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-------CPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSC-------CSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCC-------CCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 468899999999999999999999999999999999998641 45899999999999999999999999763
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=2.9e-14 Score=114.78 Aligned_cols=72 Identities=29% Similarity=0.502 Sum_probs=64.1
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|... .++++++.|+|+|++++|+.|+.+|.+.|.++
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999999653 12567899999999999999999999998775
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=2.9e-14 Score=116.14 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=67.9
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhccccc
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDR 449 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~~ 449 (546)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|....+.. +++.++.|+|+|++++++.|+.+|.+.|.+....+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc
Confidence 5789999999999999999999999999999999997653321 24678999999999999999999999998865543
No 25
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.44 E-value=6.5e-14 Score=114.48 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=66.2
Q ss_pred CcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 367 ~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|... .| +++++.|+|+|++++|+.|+.+|.++|.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999999999999999999999999642 22 467899999999999999999999999874
No 26
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=1.1e-13 Score=113.84 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=65.9
Q ss_pred cceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.... +...++.|+|+|++++|+.|+.+|.++|.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-----GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 358899999999999999999999999999999999997532 14568999999999999999999999998743
No 27
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=110.54 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=64.6
Q ss_pred cceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009012 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 444 (546)
...+.+|.||.+++|+||||+|++||+|+++|||+|.|.+....+ ...++.|+|+|++++++.|+.+|.+.+.+
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 357789999999999999999999999999999999997643222 46788999999999999999999988753
No 28
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.43 E-value=1.5e-13 Score=108.92 Aligned_cols=74 Identities=26% Similarity=0.440 Sum_probs=64.5
Q ss_pred ceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 139 ~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
..+++|+||.+++|+||||+|++|++|+++|||+|+|.++.+.. ..+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999998753321 236789999999999999999999998854
No 29
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=115.47 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=63.6
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
.+.+|.||.+++|+||||+|++||+|+++|+|+|+|.+++ + ...+|.|+|+|++++|++|+.+|.++|.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999999999997532 1 3567899999999999999999999998744
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=6.4e-14 Score=112.42 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=62.0
Q ss_pred cceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009012 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 444 (546)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|+++ ++++.|+|+|++++|+.|+.+|.+.+..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999643 2357899999999999999999997654
No 31
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=1.5e-13 Score=110.55 Aligned_cols=74 Identities=36% Similarity=0.593 Sum_probs=65.4
Q ss_pred CCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 137 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.+. +..+.++.|+|+|++++|.+|+.+|.+++.++
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 456889999999999999999999999999999999999763 12367999999999999999999999999774
No 32
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.41 E-value=3e-13 Score=108.82 Aligned_cols=72 Identities=31% Similarity=0.567 Sum_probs=65.1
Q ss_pred CceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 138 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
..++++|+||.++++.||||+|++|++|+++|||+|+|.+. .| .+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999999999999999753 12 35789999999999999999999999976
No 33
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=108.85 Aligned_cols=72 Identities=35% Similarity=0.588 Sum_probs=65.4
Q ss_pred CceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 138 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+. +..+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999763 2246799999999999999999999999875
No 34
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=1.4e-13 Score=113.76 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=66.0
Q ss_pred CcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009012 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 367 ~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 444 (546)
...++.+|+||.+++|+||||+|++||+|+++|||+|+|.+... +. ..+++.|+|+|++++|+.|+.+|.++|.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QN--TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC-CS--SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC-CC--CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 34689999999999999999999999999999999999976432 11 34689999999999999999999999976
No 35
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.40 E-value=1.7e-13 Score=126.89 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHH
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~~i~ 124 (546)
++++||...+|.|||++|++++.|+++++|+|.|+ ..++.|+|+...+... ....++|...|.. +.
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~d--------p~~i~KA~dlI~a-i~ 71 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIP--------PVNLMKAAEVVKA-IS 71 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSC--------HHHHHHHHHHHHH-HH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCC--------HHHHHHHHHHHHH-HH
Confidence 68999999999999999999999999999999994 3477889985432211 0112333333322 11
Q ss_pred HhhhcCCC-CCCCCCceEEE-EEee----------CCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceE
Q 009012 125 AEELRGDE-DSDGGHQVTAK-LLVP----------SDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192 (546)
Q Consensus 125 ~~~~~~~~-~~~~~~~~~~~-llVp----------~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v 192 (546)
..+..+. ..-..+.+.+. |-++ ...+|+||||+|.||+.|+..|||+|.|. ++.|
T Consensus 72 -rgf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~v 138 (191)
T 1tua_A 72 -LGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYEV 138 (191)
T ss_dssp -HTCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSEE
T ss_pred -cCCCHHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCEE
Confidence 0000000 00001222333 3343 23589999999999999999999999984 3479
Q ss_pred EEEcCHHHHHHHHHHHHHHHhc
Q 009012 193 QISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 193 ~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
.|.|+.++++.|...|.++|..
T Consensus 139 ~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 139 AIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTT
T ss_pred EEEeChHHHHHHHHHHHHHHcC
Confidence 9999999999999999999965
No 36
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.38 E-value=6.8e-13 Score=107.48 Aligned_cols=75 Identities=21% Similarity=0.475 Sum_probs=66.0
Q ss_pred CCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 137 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
....+.+|+||.+.+|+||||+|++||+|+++|||+|.|.++...+ .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999999999999999998753322 36789999999999999999999998853
No 37
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.36 E-value=8.3e-13 Score=111.16 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=65.6
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
..+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... + ..++++.|+|+|++++++.|+.+|.++|.+..
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 578899999999999999999999999999999999975432 1 12357999999999999999999999998764
No 38
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.36 E-value=3.8e-13 Score=109.50 Aligned_cols=74 Identities=26% Similarity=0.437 Sum_probs=65.4
Q ss_pred eEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 140 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
++++|+||.+++|+||||+|++|++|+++|||+|+|.++.+.. ..+.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999998753321 2367899999999999999999999999763
No 39
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.36 E-value=4e-13 Score=110.91 Aligned_cols=77 Identities=22% Similarity=0.502 Sum_probs=68.0
Q ss_pred CCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 136 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
....++++|+||.+++++||||+|++||+|+++|||+|+|.++.... ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999999999999999999999998753321 247899999999999999999999999763
No 40
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-13 Score=108.40 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=64.1
Q ss_pred CCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 136 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
....++++|.||.+++|+||||+|++||+|+++|||+|+|.+. ..+++|+|+|++++|++|+.+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999999999764 2378999999999999999999998754
No 41
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.35 E-value=4.7e-13 Score=109.34 Aligned_cols=74 Identities=32% Similarity=0.611 Sum_probs=66.5
Q ss_pred CCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 136 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
....++++|+||.++++.||||+|++|++|+++|||+|+|.+. .| .+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999653 22 36789999999999999999999999976
No 42
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=9.4e-13 Score=111.30 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=64.3
Q ss_pred EEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 141 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
+++|+||.+++++||||+|++||+|+++|||+|+|.++.. + .....+++|+|+|+.++|.+|+.+|.++|.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999976532 1 12346799999999999999999999999774
No 43
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.34 E-value=9e-13 Score=108.34 Aligned_cols=74 Identities=23% Similarity=0.418 Sum_probs=66.6
Q ss_pred CCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 137 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
...++++|+||.+++++||||+|++|++|+++|||+|+|.++.. ...++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999976521 246899999999999999999999999774
No 44
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=8.7e-13 Score=111.02 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=69.5
Q ss_pred CCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 136 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
....++++|+||.+.+|+||||+|++|++|+++|||+|+|.+..+.. ...++.|+|+|+.++|.+|+.+|.+++.++
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT---LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC---CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 44668899999999999999999999999999999999997653211 245899999999999999999999999876
Q ss_pred CCCcc
Q 009012 216 PSRSQ 220 (546)
Q Consensus 216 ~~~~~ 220 (546)
+...+
T Consensus 88 ~~~~~ 92 (104)
T 1we8_A 88 EELRK 92 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 44333
No 45
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=109.81 Aligned_cols=70 Identities=23% Similarity=0.473 Sum_probs=63.1
Q ss_pred eEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 140 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
.+++|+||.+++++||||+|++||+|+++|+|+|+|.++.. .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999976532 25689999999999999999999999976
No 46
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.31 E-value=3.5e-12 Score=118.14 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=99.2
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhh-----hchHHHHHHHHhcCcc-c
Q 009012 285 SLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFED-----TLSATIEAVVRLQPRC-S 358 (546)
Q Consensus 285 ~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~~rvi~I~G~~~~~~-----~~~~~~~a~~~~~~~~-~ 358 (546)
..++.||...+|.|||++|++++.|++.++++|.++. .++.++|.......+ .+...+.++.+-++.- .
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHh
Confidence 3589999999999999999999999999999999975 345667773322111 1122333333322110 0
Q ss_pred cccccccCCcceeEEEEEc----------CCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCH
Q 009012 359 EKIERDSGLISFTTRLLVP----------TSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDL 428 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~l~VP----------~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~ 428 (546)
-.+.+ +..+-..+.++ ....|+||||+|.+|+.|+..|||+|.|. +.+|.|.|++
T Consensus 80 ~~Ll~---Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~v~i~G~~ 144 (191)
T 1tua_A 80 FRLLE---EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYEVAIIGDY 144 (191)
T ss_dssp GGGGS---TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSEEEEEEEH
T ss_pred hhccc---CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCEEEEEeCh
Confidence 00111 11233344444 24689999999999999999999999994 2389999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 009012 429 DLAKDALIQVMTRLRA 444 (546)
Q Consensus 429 ~~v~~A~~~I~~~l~~ 444 (546)
++++.|...|..+|..
T Consensus 145 ~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 145 ERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999854
No 47
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.3e-12 Score=105.35 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=64.4
Q ss_pred cceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
..++.+|.||.+++|+|||++|++|++|+++|||+|+|+.+. ..+++.|+|+|++++|+.|+.+|.+++.+..
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999996532 2346799999999999999999999887754
No 48
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=2.1e-12 Score=106.55 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=63.2
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
.++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ +.++.|+|+|++++++.|+.+|.+.+.+..
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 58899999999999999999999999999999999996431 235789999999999999999999987643
No 49
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.29 E-value=1.9e-12 Score=101.00 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=59.3
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRL 442 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 442 (546)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. +.++.|+|+|++++++.|+.+|.+.+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999996532 35679999999999999999997753
No 50
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=5.1e-12 Score=104.70 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=64.1
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
.++.+|.||.++|+.|||++|++|++|+++|||+|+|+.... | ...++.|+|+|+++++..|+.+|...+.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999976432 2 236789999999999999999999888653
No 51
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=8.7e-12 Score=102.82 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 135 ~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
+....++..|.||.++++.|||++|.+|++|+++|||+|+|..+.+ ..++.|+|+|.+++|.+|+.+|..++.+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999999999999999999999999976422 2467899999999999999999998866
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.21 E-value=7.4e-12 Score=97.57 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=60.6
Q ss_pred CceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009012 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (546)
Q Consensus 138 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l 212 (546)
...+..|.||.++++.|||++|.+|++|+++|||+|+|.++. ..++.|+|+|+.++|.+|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999997642 24679999999999999999998754
No 53
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=9.5e-12 Score=102.59 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=65.4
Q ss_pred CCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 135 ~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
.....++.+|.||.+.++.||||+|.+|++|+++|||+|+|.+.+ ..++.|+|+|++++|.+|+.+|.+++.+
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999997532 2367899999999999999999999876
Q ss_pred C
Q 009012 215 N 215 (546)
Q Consensus 215 ~ 215 (546)
.
T Consensus 85 ~ 85 (94)
T 2cte_A 85 Q 85 (94)
T ss_dssp H
T ss_pred c
Confidence 3
No 54
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.3e-11 Score=103.57 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=62.5
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
..+.+|.||.++||.|||++|++|++|+++|||+|+|+... ...+.|+|+|++++++.|+.+|.+.+.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 47889999999999999999999999999999999996532 234589999999999999999999887653
No 55
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.9e-11 Score=101.26 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=64.2
Q ss_pred CceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 138 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
...++.|.||.+.++.||||+|++|++|+++|||+|+|.++.. + ...++.|+|+|+.++|.+|+.+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999977532 2 13578999999999999999999998865
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=7.6e-11 Score=96.98 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=63.1
Q ss_pred cceeEEEEEcCCcceeEEcCCChhHHHHHHhc-CceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLT-KANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~t-ga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
..++..|.||.++|+.|||++|.+|++|+++| ||+|.|+.. ++..+.|+|.|+.++|+.|+.+|.+++.+.
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 36889999999999999999999999999999 999999643 234568999999999999999999998764
No 57
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=8.2e-11 Score=98.67 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=62.5
Q ss_pred CceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 138 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
-+.+..|.||.+.++.|||++|.+|++|+++|||+|+|.++.. ..+.|+|+|+.++|.+|+.+|..++.+
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-------~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-------QSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-------TCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-------CcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999976422 245899999999999999999998866
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.02 E-value=4.3e-10 Score=93.79 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=60.2
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHh-cCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRL-TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~-tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
.++.+|.||.++|++|||++|++|++|+++ ++++|+++. +++.|+|+|+++.|..|+.+|...+++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 589998853 24689999999999999999988887643
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=2.6e-10 Score=93.74 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=65.3
Q ss_pred CCCCceEEEEEeeCCceeEEeccCchHHHHHHhhc-CceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHh
Q 009012 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSET-GAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLH 213 (546)
Q Consensus 135 ~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~ 213 (546)
+..+.++..|.||.++++.|||++|.+|++|+++| ||+|+|..+. +..+.|+|+|..++|.+|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999 9999997642 345689999999999999999999986
Q ss_pred c
Q 009012 214 D 214 (546)
Q Consensus 214 ~ 214 (546)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=7.8e-10 Score=92.21 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=59.9
Q ss_pred ceEEEEEeeCCceeEEeccCchHHHHHHhh-cCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSE-TGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 139 ~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
.++.+|.||..++++|||++|++|++|+++ ++++|+|+++ ++.|+|+|+++.|.+|..+|..++.+
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------EDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----------SCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 5999998652 56899999999999999999998866
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.88 E-value=1e-09 Score=88.62 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=56.3
Q ss_pred cceeEEEEEcCCcceeEEcCCChhHHHHHHhcCce-EEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHH
Q 009012 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN-IRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTR 441 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~-I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~ 441 (546)
..+..+|.||.+++|.|||++|.+|++|+++|||+ |.|.. ++.+|+|.| +.+++++|+.+|...
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 35889999999999999999999999999999998 99942 347999999 899999998887443
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.70 E-value=1e-08 Score=82.74 Aligned_cols=65 Identities=28% Similarity=0.350 Sum_probs=57.3
Q ss_pred CCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCce-EEEecCCCCCcccCCCCceEEEEc-CHHHHHHHHHHHHH
Q 009012 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQ-IRILKDEHLPSCALRSDELVQISG-EASVVKKALCQIAS 210 (546)
Q Consensus 136 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~dr~v~I~G-~~~~V~~A~~~I~~ 210 (546)
....+...|.||.+.++.|||++|.+|++|+++|||+ |.|..+ +..|+|.| +.+++.+|+.+|..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----------dG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----------TGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----------TTEEEEEESSHHHHHHHHHHHSC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----------CCEEEEEECCHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999998 999532 57899999 89999999887765
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=1e-07 Score=82.86 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=61.3
Q ss_pred ceeEEEEEcCC------cceeEEcCCChhHHHHHHhcCceEEEecCCCCC-----------CCCCCCCceEEEEc-CHHH
Q 009012 369 SFTTRLLVPTS------RIGCLIGKGGSIITEMRRLTKANIRILPKENLP-----------KIASEDDEMVQISG-DLDL 430 (546)
Q Consensus 369 ~~~~~l~VP~~------~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P-----------~~~~~~~r~v~I~G-~~~~ 430 (546)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.... .....++-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 47889999988 889999999999999999999999997743211 00112345688999 6899
Q ss_pred HHHHHHHHHHHHHh
Q 009012 431 AKDALIQVMTRLRA 444 (546)
Q Consensus 431 v~~A~~~I~~~l~~ 444 (546)
++.|+.+|..+|..
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999865
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=1.8e-07 Score=79.74 Aligned_cols=77 Identities=16% Similarity=0.026 Sum_probs=58.5
Q ss_pred ceeEEEEEcCC-------cceeEEcCCChhHHHHHHhcCceEEEecCCCC----CCCC-CCCCceEEEEc-CHHHHHHHH
Q 009012 369 SFTTRLLVPTS-------RIGCLIGKGGSIITEMRRLTKANIRILPKENL----PKIA-SEDDEMVQISG-DLDLAKDAL 435 (546)
Q Consensus 369 ~~~~~l~VP~~-------~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~----P~~~-~~~~r~v~I~G-~~~~v~~A~ 435 (546)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... .... ..++-.|.|.+ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46778888865 77999999999999999999999999744210 1001 11233677876 699999999
Q ss_pred HHHHHHHHhc
Q 009012 436 IQVMTRLRAN 445 (546)
Q Consensus 436 ~~I~~~l~~~ 445 (546)
.+|.++|...
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999888754
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.46 E-value=3.3e-07 Score=79.70 Aligned_cols=77 Identities=27% Similarity=0.365 Sum_probs=61.4
Q ss_pred CceEEEEEeeCC------ceeEEeccCchHHHHHHhhcCceEEEecCCCCC-----------cccCCCCceEEEEc-CHH
Q 009012 138 HQVTAKLLVPSD------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHLP-----------SCALRSDELVQISG-EAS 199 (546)
Q Consensus 138 ~~~~~~llVp~~------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p-----------~~~~~~dr~v~I~G-~~~ 199 (546)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|..+.... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999988 788999999999999999999999997632111 00112356788998 578
Q ss_pred HHHHHHHHHHHHHhc
Q 009012 200 VVKKALCQIASRLHD 214 (546)
Q Consensus 200 ~V~~A~~~I~~~l~~ 214 (546)
.+.+|+.+|..+|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=8.1e-07 Score=75.64 Aligned_cols=78 Identities=23% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCceEEEEEeeCC-------ceeEEeccCchHHHHHHhhcCceEEEecCCCC-----CcccCCCCceEEEEc-CHHHHHH
Q 009012 137 GHQVTAKLLVPSD-------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-----PSCALRSDELVQISG-EASVVKK 203 (546)
Q Consensus 137 ~~~~~~~llVp~~-------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~-----p~~~~~~dr~v~I~G-~~~~V~~ 203 (546)
-..++.+|.||-+ .++.|||++|.+||+|+++|||+|.|..+... .......+-.|.|++ +.+++.+
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~ 88 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAA 88 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHH
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHH
Confidence 3567888988865 67999999999999999999999999743110 000012344677775 6899999
Q ss_pred HHHHHHHHHhc
Q 009012 204 ALCQIASRLHD 214 (546)
Q Consensus 204 A~~~I~~~l~~ 214 (546)
|+.+|.++|..
T Consensus 89 A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 89 AKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999999865
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.18 E-value=5.8e-07 Score=78.48 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=54.9
Q ss_pred eeEEEEEcCC------cceeEEcCCChhHHHHHHhcCceEEEecCCCC------------CCCCCCCC-ceEEEEcC-HH
Q 009012 370 FTTRLLVPTS------RIGCLIGKGGSIITEMRRLTKANIRILPKENL------------PKIASEDD-EMVQISGD-LD 429 (546)
Q Consensus 370 ~~~~l~VP~~------~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~------------P~~~~~~~-r~v~I~G~-~~ 429 (546)
++.+|.||.+ ++|.|||++|.++|+|+++|||+|.|..+... |.....++ --|.|+++ ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 5678888854 48999999999999999999999999876421 10001122 25889984 43
Q ss_pred -----HHHHHHHHHHHHHH
Q 009012 430 -----LAKDALIQVMTRLR 443 (546)
Q Consensus 430 -----~v~~A~~~I~~~l~ 443 (546)
.++.|+.+|...|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78899999988875
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.14 E-value=1.8e-06 Score=94.02 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=72.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCC
Q 009012 108 FVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187 (546)
Q Consensus 108 ~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~ 187 (546)
.+..|.+++..+++.+.+.......+.....+....|.||.+.++.|||++|.+||.|+++|||+|.|..
T Consensus 535 aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------- 604 (630)
T 3u1k_A 535 AIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC----------
Confidence 4667888888888765543332222223445678899999999999999999999999999999999953
Q ss_pred CCceEEEEcC-HHHHHHHHHHHHHHH
Q 009012 188 SDELVQISGE-ASVVKKALCQIASRL 212 (546)
Q Consensus 188 ~dr~v~I~G~-~~~V~~A~~~I~~~l 212 (546)
+..|.|.+. .+++.+|+.+|..++
T Consensus 605 -~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 -EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp -SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred -CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 567999986 688999998887654
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.14 E-value=1.7e-06 Score=75.58 Aligned_cols=76 Identities=25% Similarity=0.398 Sum_probs=56.8
Q ss_pred eEEEEEeeCCc------eeEEeccCchHHHHHHhhcCceEEEecCCCCC------------cc-cCCCCceEEEEcCH-H
Q 009012 140 VTAKLLVPSDQ------IGCVIGKGGQIVQNIRSETGAQIRILKDEHLP------------SC-ALRSDELVQISGEA-S 199 (546)
Q Consensus 140 ~~~~llVp~~~------vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p------------~~-~~~~dr~v~I~G~~-~ 199 (546)
++.+|.||-+. +|.|||++|.++|+|+++|||+|.|..+...- .. ....+=.|.|++.. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 57889999655 89999999999999999999999998653211 00 01222368888843 2
Q ss_pred -----HHHHHHHHHHHHHhcC
Q 009012 200 -----VVKKALCQIASRLHDN 215 (546)
Q Consensus 200 -----~V~~A~~~I~~~l~~~ 215 (546)
.+.+|+.+|..+|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 7899999999988653
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.72 E-value=1.2e-05 Score=87.72 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=53.8
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 442 (546)
.....|.||.+++|.|||+||.+||+|+++|||+|.|. ++.+|.|.++ .+++++|+.+|.+.+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999994 2468999996 788999998886544
No 71
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.65 E-value=2.1e-05 Score=86.73 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=29.0
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009012 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
..+..|.+++..|++.+.+.......+.....+....|.||.+.++.|||++|.+||.|+++|||+|.|..
T Consensus 537 ~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------- 607 (726)
T 4aid_A 537 QALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------- 607 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------
Confidence 34677788888887765433322222223334557889999999999999999999999999999999843
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHhc
Q 009012 187 RSDELVQISGE-ASVVKKALCQIASRLHD 214 (546)
Q Consensus 187 ~~dr~v~I~G~-~~~V~~A~~~I~~~l~~ 214 (546)
+..|.|.+. .+++.+|+..|..++.+
T Consensus 608 --dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 608 --DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --------CCSCHHHHHHHHHC-------
T ss_pred --CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 456778775 78899999998887754
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.62 E-value=8.9e-05 Score=63.33 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=58.4
Q ss_pred eEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009012 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 444 (546)
...|.|....++.|||++|+.|++|+..|.+.|+|..-+ .+....|+|.|++..-..|+.+|.....-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999997532 23566799999999999999999776653
No 73
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.45 E-value=1.7e-05 Score=69.70 Aligned_cols=104 Identities=23% Similarity=0.293 Sum_probs=71.3
Q ss_pred eEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHHH
Q 009012 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDR 122 (546)
Q Consensus 43 ~~~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~~ 122 (546)
-.+.++|+...+|..||++|+.|+.|+++.|-+|.|-+- +..++ + .+...
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~-----------s~d~~----------------~---fI~na 85 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY-----------SSDLE----------------R---IVKNL 85 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC-----------CSSHH----------------H---HHHHH
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc-----------CCCHH----------------H---HHHHh
Confidence 356899999999999999999999999999999986321 11111 1 01110
Q ss_pred HHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEe
Q 009012 123 VIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRIL 176 (546)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~ 176 (546)
+.-..+..-.-...+....+.+.||.++.+..|||+|++++-...-||.+|.|.
T Consensus 86 LsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 86 FPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp STTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred cCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 000000000000002345788999999999999999999999999999998774
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.44 E-value=8.1e-05 Score=65.37 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=74.3
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhchHHHHHHHHhcCcccccccc
Q 009012 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER 363 (546)
Q Consensus 284 ~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (546)
..+.|+|+...+|..||++|++|+.|+++.|-+|.|-.-+.+ + ..-+..++ .|.-...+.-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-~----------------~~fI~naL--sPA~V~~V~i 96 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-L----------------ERIVKNLF--PGVKIESINV 96 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-H----------------HHHHHHHS--TTSCEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-H----------------HHHHHHhc--CCceEEEEEE
Confidence 377899999999999999999999999999999887653322 0 11122222 1211111111
Q ss_pred ccCCcceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEe
Q 009012 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRIL 406 (546)
Q Consensus 364 ~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~ 406 (546)
...+......+.||.+..+..|||+|.+++-..+.||.+|.|.
T Consensus 97 ~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 97 RERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred eecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 1001245678999999999999999999999999999988773
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.13 E-value=0.00064 Score=58.08 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=58.6
Q ss_pred EEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 142 ~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
+.|.|.+.+++.|+|++|+.|+.|+..|.+.|+|..-+. +..--|+|.|++..-.+|+.+|..+..-
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999976421 3456799999999999999999887744
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.07 E-value=0.00013 Score=80.42 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=11.9
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHHHhc
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l~~~ 445 (546)
.....|.||.++++.|||+||.+||+|.++|||+|.|. ++..|.|.+. .++++.|+.+|...+.+.
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp CC------------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 34678999999999999999999999999999999983 2346777774 888999999888777644
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.92 E-value=0.0074 Score=57.55 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=65.6
Q ss_pred CcccccccCCchhHHHH-HhhhCCeEEecCCCCCCCceEEEEecCcchhhhchHHHHHHHHhcCccccccc--cccCCcc
Q 009012 293 ANIGGVIGKGGAIINQI-RQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE--RDSGLIS 369 (546)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i-~~~sga~I~i~~~~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 369 (546)
+-+|..||++|++|+.| ++-.|-+|.|-.-+.+ . ..-+..++ .|.-...+. .+. .
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------p----~~fi~nal--sPA~V~~V~i~~~~---~ 183 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------P----ARFVANAL--SPAKVVSVSVIDQT---A 183 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--TTSCCSEEEEEETT---T
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-------------H----HHHHHhcc--CCcceEEEEEEcCC---C
Confidence 46899999999999999 5555878877643221 0 01112222 121111111 111 2
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCC
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKEN 410 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~ 410 (546)
....+.||.++.+.-|||+|.+|+--.+.||.+|.|.....
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 46789999999999999999999999999999999976543
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.90 E-value=0.0084 Score=57.16 Aligned_cols=98 Identities=23% Similarity=0.221 Sum_probs=63.1
Q ss_pred CccceEecCCcHHHHHH-HHHhCCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009012 52 RKIGSIIGRGGEIVKQL-RIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (546)
Q Consensus 52 ~~vg~IIGk~G~~Ik~I-~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (546)
+-+|..||++|++|+.| ++-.|-+|.|-+- +-.+ .. .+...+.-..+..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-----------s~dp----------------~~---fi~nalsPA~V~~ 175 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-----------DDDP----------------AR---FVANALSPAKVVS 175 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-----------CSSH----------------HH---HHHHHTTTSCCSE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEe-----------cCCH----------------HH---HHHhccCCcceEE
Confidence 45899999999999999 5556888876221 1110 01 1111110000000
Q ss_pred CCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCC
Q 009012 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (546)
Q Consensus 131 ~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (546)
-. ......-.+.+.||.++.+..|||+|++|+-...-||.+|.|....+
T Consensus 176 V~-i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 176 VS-VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EE-EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EE-EEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 00 00011246889999999999999999999999999999999977543
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.73 E-value=0.0032 Score=63.49 Aligned_cols=98 Identities=24% Similarity=0.268 Sum_probs=65.0
Q ss_pred CccceEecCCcHHHHHHHHHh-CCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009012 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (546)
Q Consensus 52 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (546)
+-+|..||++|++|+.|.++. |=+|.|-+- . ++ ... .+...+.-..+..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~------------s--~d-------------p~~---fi~nalsPA~V~~ 298 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY------------D--DD-------------PAR---FVANALSPAKVVS 298 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC------------C--SS-------------HHH---HHHHHTTTSCCSE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc------------C--CC-------------HHH---HHHHhcCCcceeE
Confidence 468999999999999999998 888876221 1 00 001 1111110000000
Q ss_pred CCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCC
Q 009012 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (546)
Q Consensus 131 ~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (546)
-. ........+.+.||..+.+..|||+|++++-...-||.+|.|....+
T Consensus 299 V~-~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 299 VS-VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp EE-EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred EE-EEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 00 00011346889999999999999999999999999999999977543
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.58 E-value=0.013 Score=59.00 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=66.9
Q ss_pred CcccccccCCchhHHHHHhhh-CCeEEecCCCCCCCceEEEEecCcchhhhchHHHHHHHHhcCcccccc--ccccCCcc
Q 009012 293 ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKI--ERDSGLIS 369 (546)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i~~~s-ga~I~i~~~~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 369 (546)
+-+|..||++|.+|+.|.++. |-+|.|-.-+.+ . ..-+..++ .|.-...+ -.+ ..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------p----~~fi~nal--sPA~V~~V~~~~~---~~ 306 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------P----ARFVANAL--SPAKVVSVSVIDQ---TA 306 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--TTSCCSEEEEEET---TT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-------------H----HHHHHHhc--CCcceeEEEEEcC---CC
Confidence 568999999999999999999 878877543211 0 01112222 12211111 111 13
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCC
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE 409 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~ 409 (546)
....+.||....+..|||+|.+++-..+.||.+|.|....
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 5688999999999999999999999999999999997643
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.57 E-value=0.0034 Score=69.50 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=13.4
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009012 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
+.+..|.+++..+++.+.+.............+....+.||.+.++.|||++|.+|+.|.++||+.|.|..
T Consensus 527 ~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------- 597 (723)
T 3cdi_A 527 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------- 597 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------
Confidence 34566777777777765443322111222334556788999999999999999999999999999998843
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHh
Q 009012 187 RSDELVQISGE-ASVVKKALCQIASRLH 213 (546)
Q Consensus 187 ~~dr~v~I~G~-~~~V~~A~~~I~~~l~ 213 (546)
+..|.|.+. .+.+.+|...|..++.
T Consensus 598 --dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 598 --DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------
T ss_pred --CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 455777664 5677778777766553
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.32 E-value=0.002 Score=71.58 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=38.0
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009012 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
..+..|.+++..|++.+.+..... .......+....|.||.+.++.|||++|.+||.|+++|||.|.|..
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------- 635 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------
Confidence 455677778778777655433222 2222333445678899999999999999999999999999998853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009012 187 RSDELVQISGE-ASVVKKALCQIASRL 212 (546)
Q Consensus 187 ~~dr~v~I~G~-~~~V~~A~~~I~~~l 212 (546)
+..|.|... .+...+|...|..+.
T Consensus 636 --dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 --DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ------CCCBSSHHHHCC---------
T ss_pred --CceEEEecCCHHHHHHHHHHHHHhc
Confidence 445667654 566777766665544
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.18 E-value=0.065 Score=53.79 Aligned_cols=94 Identities=32% Similarity=0.436 Sum_probs=64.9
Q ss_pred CcccccccCCchhHHHHHhhh-CCeEEecCCCCCCCceEEEEecCcchhhhchHHHHHHHHhcCcccccccc-ccCCcce
Q 009012 293 ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER-DSGLISF 370 (546)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i~~~s-ga~I~i~~~~~~~~~rvi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 370 (546)
+-+|..||.+|.+|+.+..+. |-+|.|-.-+.+ . ..-+..++ .|.-...+.- + ....
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-------------~----~~fi~nal--~Pa~v~~v~~~d--~~~~ 303 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-------------P----KQLIANAL--APATVIEVEILD--KENK 303 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--CSSCCSEEEEEE--TTTT
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-------------H----HHHHHHhc--CccEEEEEEEEc--CCCC
Confidence 467999999999999999998 677766543211 0 11122222 1221111111 1 1135
Q ss_pred eEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEec
Q 009012 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILP 407 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~ 407 (546)
...+.||..+.+.-|||+|.+++--.+.||.+|.|.+
T Consensus 304 ~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 304 AARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 6889999999999999999999999999999999965
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.13 E-value=0.059 Score=54.07 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=63.1
Q ss_pred CccceEecCCcHHHHHHHHHh-CCeEEEcCCCCCCcceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009012 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (546)
Q Consensus 52 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (546)
+-+|..||.+|..|+.+.++. |-+|.|-+- +-.+ .. .+...|.-..+..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-----------s~d~----------------~~---fi~nal~Pa~v~~ 294 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-----------SDDP----------------KQ---LIANALAPATVIE 294 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-----------CSSH----------------HH---HHHHHTCSSCCSE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-----------CCCH----------------HH---HHHHhcCccEEEE
Confidence 458999999999999999998 677765211 1110 01 1111110000000
Q ss_pred CCCCCCCCceEEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecC
Q 009012 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKD 178 (546)
Q Consensus 131 ~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~ 178 (546)
- ....+....+.+.||..+.+..|||+|++++-...-||.+|.|...
T Consensus 295 v-~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 295 V-EILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp E-EEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred E-EEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 0 0001123468899999999999999999999999999999999764
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.70 E-value=0.011 Score=65.32 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=0.0
Q ss_pred ceeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHHHH
Q 009012 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTRLR 443 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l~ 443 (546)
.....+.||.++++.|||++|.+|+.|.++||+.|.|.. +..|.|.+ +.+.++.|..+|...+.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 345778999999999999999999999999999998832 34666766 45677777777665543
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.59 E-value=0.006 Score=67.82 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=21.1
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 442 (546)
....|.||.+.+|.|||++|.+||+|++.||+.|.|.. +..|.|... .+.++.|..+|....
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 34568899999999999999999999999999999842 346777764 566666766665443
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=69.82 E-value=1.7 Score=38.18 Aligned_cols=29 Identities=21% Similarity=0.021 Sum_probs=25.1
Q ss_pred EEEEEecCCccceEecCCcHHHHHHHHHh
Q 009012 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 44 ~~rilip~~~vg~IIGk~G~~Ik~I~~~t 72 (546)
++.+.+-.+..|.||||.|.|++.|+--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 35667778999999999999999999766
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=59.91 E-value=3 Score=33.26 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=24.2
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 6788888899999999999999988653
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=57.81 E-value=3 Score=36.58 Aligned_cols=65 Identities=11% Similarity=-0.040 Sum_probs=42.1
Q ss_pred EEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 141 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
++.+-+..+..|.||||.|+|++.|+--+..-+ .+.. ...=.|-|.+=.+.-++.+..++..+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v--n~~~-------~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWI--HPTY-------GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH--HHHH-------SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHh--hhcC-------CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999987653222 1110 0011244556567777777777666655
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=56.33 E-value=2.9 Score=33.35 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=23.7
Q ss_pred eEEEEEcCCcceeEEcCCChhHHHHHHh
Q 009012 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
.+++.|....-|.|||++|..|++|++.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4678888888999999999999988653
No 91
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=44.81 E-value=48 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.0
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009012 418 DDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 418 ~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (546)
++-.|.|+|-|++|.+-+..-.++|..+
T Consensus 40 ndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 4557999999999998888777888765
No 92
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=41.61 E-value=26 Score=19.92 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=11.1
Q ss_pred cCCCCCCCCCCCCCCCCCccccC
Q 009012 7 SYGKRSHSQTDYADHGPNKRRYT 29 (546)
Q Consensus 7 ~~~~r~~~~~~~~~~~~~~~~~~ 29 (546)
|+.+|.|++..+ ..-.+|||+-
T Consensus 2 smsrrrhsdend-ggq~hkrr~t 23 (26)
T 3ul0_C 2 SMSRRRHSDEND-GGQPHKRRKT 23 (26)
T ss_dssp -CCCCCCTTSCS-SCCCSCCCCC
T ss_pred cccccccccccC-CCCccccccc
Confidence 567788874332 2224555543
No 93
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=36.70 E-value=1.7e+02 Score=23.85 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=54.5
Q ss_pred ceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEeeCCceeEEeccCc-------
Q 009012 87 ERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGG------- 159 (546)
Q Consensus 87 ervv~I~G~~e~~~~~e~~~~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G------- 159 (546)
.-+|.|+|-++++ .+.+.+-.+++..+- .-.++..++-..+-+- +|=-.|
T Consensus 42 ~l~i~itgvpeqv-------------rkelakeaerl~~ef---------ni~v~y~imgsgsgvm-~i~f~gddlea~e 98 (170)
T 4hhu_A 42 RLVIVITGVPEQV-------------RKELAKEAERLKAEF---------NINVQYQIMGSGSGVM-VIVFEGDDLEALE 98 (170)
T ss_dssp EEEEEEESCCHHH-------------HHHHHHHHHHHHHHH---------TCEEEEEEECTTCCEE-EEEEECSCHHHHH
T ss_pred EEEEEEeCCcHHH-------------HHHHHHHHHHHHHhc---------ceEEEEEEEeCCceEE-EEEEecCcHHHHH
Confidence 4578899999884 555655556655442 1233444443333322 222222
Q ss_pred ----hHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009012 160 ----QIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 160 ----~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 215 (546)
+.|++-+.-.|+ +...-+ ..+-.+.|+|-+++|++-+..-.+.|...
T Consensus 99 kalkemirqarkfagt-vtytl~--------gn~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 99 KALKEMIRQARKFAGT-VTYTLS--------GNRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEC--------SSEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcce-EEEEEe--------CCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 223333444443 222222 23557889999999999888777888664
No 94
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=35.77 E-value=10 Score=35.46 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.1
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHhCCeE
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKI 76 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I 76 (546)
+.|.|..+..+.+|||.|++++.||.-+..-+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 45556677899999999999999998876443
No 95
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=27.93 E-value=2.5e+02 Score=22.93 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=31.5
Q ss_pred HHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009012 392 ITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 392 Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (546)
|++-++..|+---... .++-.+.|+|-|++|.+-+..-.++|..+.
T Consensus 105 irqarkfagtvtytl~---------gn~l~i~itgvpeqvrkelakeaerl~~ef 150 (170)
T 4hhu_A 105 IRQARKFAGTVTYTLS---------GNRLVIVITGVPEQVRKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHTTCEEEEEEC---------SSEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceEEEEEe---------CCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 5666666664332221 233468999999999988888888887653
No 96
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.54 E-value=22 Score=32.74 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.4
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4677777889999999999999987654
No 97
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=26.23 E-value=24 Score=33.22 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=24.6
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+-
T Consensus 49 i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 49 TEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp EEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 6788888899999999999999998764
No 98
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.04 E-value=19 Score=33.83 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=24.3
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5777888889999999999999988664
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.02 E-value=19 Score=33.76 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.7
Q ss_pred eEEEEEcCCcceeEEcCCChhHHHHHHh
Q 009012 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
.+++.|....-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4678888888999999999999988654
No 100
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.99 E-value=73 Score=29.60 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=40.2
Q ss_pred EEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcCHHHHH
Q 009012 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~ 432 (546)
.-+.++...+..++|+++..++.|.+.+++.|-|-. +-.|=|.++.....
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~ 187 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVS 187 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHH
Confidence 346899999999999999999999999999998822 23677888876333
No 101
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=25.94 E-value=14 Score=34.40 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.0
Q ss_pred EEEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCc-eEEEEcCHHHHHHHHHHHHHHHhc
Q 009012 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE-LVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 141 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr-~v~I~G~~~~V~~A~~~I~~~l~~ 214 (546)
++.|.|.....+.||||.|++++.||--+..-++-... ..-+ .|-|.|-.+.-++.+..+...+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~--------~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS--------DYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS--------SCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC--------CceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 35566677789999999999999999887654422111 1112 234455555555666555555543
No 102
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.37 E-value=19 Score=35.03 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=28.9
Q ss_pred CceEEEEEeeCC-ceeEEeccCchHHHHHHh--------hcCceEEE
Q 009012 138 HQVTAKLLVPSD-QIGCVIGKGGQIVQNIRS--------ETGAQIRI 175 (546)
Q Consensus 138 ~~~~~~llVp~~-~vg~IIGk~G~~Ik~I~~--------~tga~I~i 175 (546)
..+...++|..+ +.+.||||+|+.||+|.. -++++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 346777888865 789999999999987644 46666655
No 103
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=25.24 E-value=1.1e+02 Score=28.34 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=36.9
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCcceEEEEecCC
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSAS 96 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~ 96 (546)
+-+.|+...+..++|+++..++.|.++++++|-+. .. ..|-|.+..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG-----~N-G~IWi~~~~ 195 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA-----RN-GRIHLECPN 195 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE-----TT-TEEEEECSC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe-----CC-CEEEEecCC
Confidence 34578888999999999999999999999999983 32 356687753
No 104
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=25.20 E-value=1.4e+02 Score=21.63 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009012 188 SDELVQISGEASVVKKALCQIASRLHDNP 216 (546)
Q Consensus 188 ~dr~v~I~G~~~~V~~A~~~I~~~l~~~~ 216 (546)
.|-.+.|+|.+++|++-+..-.+.|.+.+
T Consensus 40 ndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 45669999999999998887778886643
No 105
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.86 E-value=19 Score=33.18 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=26.6
Q ss_pred eEEEEEcCCcceeEEcCCChhHHHHHH----hcC---ceEEE
Q 009012 371 TTRLLVPTSRIGCLIGKGGSIITEMRR----LTK---ANIRI 405 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~----~tg---a~I~i 405 (546)
.+++.|....-|.|||++|+.|++|+. .++ .+|.|
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i 82 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV 82 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEE
Confidence 356777788889999999999998754 455 45555
No 106
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=24.72 E-value=22 Score=34.60 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=28.7
Q ss_pred cceeEEEEEcCCc-ceeEEcCCChhHHHHHHh--------cCceEEE
Q 009012 368 ISFTTRLLVPTSR-IGCLIGKGGSIITEMRRL--------TKANIRI 405 (546)
Q Consensus 368 ~~~~~~l~VP~~~-vG~IIGkgG~~Ik~I~~~--------tga~I~i 405 (546)
..+...+.|..+- -+.||||+|+.||+|..+ .+++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 3577788888764 499999999999988653 5666554
No 107
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=24.53 E-value=23 Score=33.31 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.7
Q ss_pred eeEEEEEcCCcceeEEcCCChhHHHHHHh
Q 009012 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
..+++.|....-|.|||++|..|++|++.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45678888889999999999999998764
No 108
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.47 E-value=91 Score=28.92 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=43.2
Q ss_pred EEEEeeCCceeEEeccCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHH
Q 009012 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIAS 210 (546)
Q Consensus 142 ~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~ 210 (546)
+-+-++...+.+++|+++..++.|.+.+++.|-+-. .-.|-|.++......+...|..
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHHHH
Confidence 345677788889999999999999999999998733 3457788887655544444443
No 109
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.28 E-value=19 Score=33.52 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=25.2
Q ss_pred EEEEEecCCccceEecCCcHHHHHHHHHhC
Q 009012 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTK 73 (546)
Q Consensus 44 ~~rilip~~~vg~IIGk~G~~Ik~I~~~tg 73 (546)
..++.|....-|.|||++|+.|++|+.+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 367788889999999999999999887643
No 110
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=23.14 E-value=98 Score=24.76 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=34.3
Q ss_pred hHHHHHHhhcCceEEEecCCC--CCcccCCCCceEEEEcCHHHHHHHHHHHHH
Q 009012 160 QIVQNIRSETGAQIRILKDEH--LPSCALRSDELVQISGEASVVKKALCQIAS 210 (546)
Q Consensus 160 ~~Ik~I~~~tga~I~i~~~~~--~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~ 210 (546)
-.|.+|..++++.++|....- +-.. .-..=+|.+.|+.+++.+|+..+.+
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~-~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGV-KFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTE-EEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCe-eEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 478999999999999976311 0000 0011267899999999999877664
No 111
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.62 E-value=19 Score=33.49 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=23.8
Q ss_pred eEEEEEcCCcceeEEcCCChhHHHHHHh
Q 009012 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
.+++.|....-|.|||++|+.|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4668888889999999999999988653
No 112
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=21.61 E-value=19 Score=33.04 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=22.5
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009012 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~vg~IIGk~G~~Ik~I~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+-
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l 90 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4566667788899999999999988653
No 113
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=20.81 E-value=1.1e+02 Score=28.38 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=39.5
Q ss_pred EEEEEcCCcceeEEcCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHH
Q 009012 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAK 432 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~ 432 (546)
.-+.++...+..++|+++..+..|.+.+++.|-+-. +..|-|.+. +..+.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~ 200 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEA 200 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHH
Confidence 446899999999999999999999999999998832 346778864 43433
Done!