Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>009013
MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN
WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS
CRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIF
YEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQN
VESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTG
TRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSW
TVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMS
SMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVA
HVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSL
CGGGSH

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  009013
        (546 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2149294 - symbol:AT5G20170 species:3702 "Arabi...  1512  4.4e-155  1


>TAIR|locus:2149294 [details] [associations]
            symbol:AT5G20170 species:3702 "Arabidopsis thaliana"
            [GO:0001104 "RNA polymerase II transcription cofactor activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
            InterPro:IPR019313 Pfam:PF10156 EMBL:CP002688 EMBL:AF296825
            GO:GO:0016592 GO:GO:0001104 IPI:IPI00516768 RefSeq:NP_197517.3
            UniGene:At.31219 IntAct:F4K460 PRIDE:F4K460
            EnsemblPlants:AT5G20170.1 GeneID:832140 KEGG:ath:AT5G20170
            TAIR:At5g20170 KO:K15133 OMA:YFKQSAK PhylomeDB:F4K460
            Uniprot:F4K460
        Length = 653

 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 312/551 (56%), Positives = 397/551 (72%)

Query:     1 MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
             MTRPK +PNE+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+N
Sbjct:   110 MTRPKPMPNEILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRN 169

Query:    61 WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
             WKVKRQR+ A  + NEGFTIDL D+SLYD     RPS+LSTIR+DHDSAGMLAIN+P +S
Sbjct:   170 WKVKRQRMLASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDS 229

Query:   121 CRSFRFGFLGVQS-GDSSKQCSKVKNSCSPR-PSKEAKESVNDDECVREKHSLLREVHQA 178
               S RFG++G+   G+S++    + ++     P    K S +DD+ V+E HSLLREVH++
Sbjct:   230 WYSLRFGYVGLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKS 289

Query:   179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQXXXXXXXXXXXXXXXXNQGDLSVDSWVN 238
             IF EQ+FD++NREAF + +G N++G+REN+++                 +   S+     
Sbjct:   290 IFAEQLFDMLNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNP-SI----- 343

Query:   239 QNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
             +  ES  L ++S   V+ AE  D  L+K G +PN  +YEIYLQQ+FHE+ +G+AK++  S
Sbjct:   344 KKSESATLLIESSGRVEPAEGGDYRLKKLG-FPNRTSYEIYLQQIFHEHAFGKAKDQLKS 402

Query:   299 TGTRVSGPPTKDG-SGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRT 357
                R S    KD  SGLL HFCLSL HRIFSN+V V LE+ VC VPYLHL+SHPTW+SRT
Sbjct:   403 KSIRASNQTEKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRT 462

Query:   358 SSWTVFLKVPQSIL---HAESNSRTAE-TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFK 413
             SSWTVF+ VP SI+    +E+ S   +   K+ FRT VVV DDCI VE E TPNVVGL K
Sbjct:   463 SSWTVFMTVPPSIIPQGRSETQSPDGKRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLK 522

Query:   414 GRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG 473
               S ++ S+NKY+CD+ADLPV+ILQQVASQ++ WL EEA  VG KA+R+FLSLS E+ +G
Sbjct:   523 SSSCNLFSINKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEG 582

Query:   474 ETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYST 533
             E VSLVAHV+PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS 
Sbjct:   583 ERVSLVAHVNPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSV 635

Query:   534 LMDLVSLCGGG 544
             LMDL++LCG G
Sbjct:   636 LMDLINLCGTG 646


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      546       530   0.00092  119 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  323 KB (2165 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  43.72u 0.14s 43.86t   Elapsed:  00:00:02
  Total cpu time:  43.72u 0.14s 43.86t   Elapsed:  00:00:02
  Start:  Mon May 20 16:52:36 2013   End:  Mon May 20 16:52:38 2013

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