Query 009013
Match_columns 546
No_of_seqs 17 out of 19
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 16:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h63_Q Mediator of RNA polymer 99.8 4E-18 1.4E-22 176.1 16.6 284 6-337 84-371 (469)
2 4gwp_B Mediator of RNA polymer 99.7 4.4E-16 1.5E-20 167.2 15.0 294 4-341 262-568 (687)
3 4h62_Q Mediator of RNA polymer 71.2 13 0.00043 37.4 8.4 140 172-342 54-194 (312)
4 4g7x_B TOLA protein; membrane, 67.7 3 0.0001 37.1 2.8 45 5-63 19-65 (138)
5 3i9v_7 NADH-quinone oxidoreduc 36.6 1.5E+02 0.0053 26.7 8.4 62 442-504 14-104 (129)
6 3gb0_A Peptidase T; NP_980509. 25.5 83 0.0029 29.7 5.2 41 443-483 27-80 (373)
7 1xmb_A IAA-amino acid hydrolas 21.0 1.2E+02 0.0041 29.4 5.4 43 443-485 49-95 (418)
8 1q7l_A Aminoacylase-1; catalys 20.0 1.9E+02 0.0066 25.3 6.1 41 443-483 33-82 (198)
9 1cg2_A Carboxypeptidase G2; me 19.9 1.4E+02 0.0049 28.4 5.6 42 443-484 43-93 (393)
10 1tkj_A Aminopeptidase, SGAP; d 19.1 1.7E+02 0.0058 27.2 5.8 41 443-483 36-87 (284)
No 1
>4h63_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=99.77 E-value=4e-18 Score=176.10 Aligned_cols=284 Identities=13% Similarity=0.113 Sum_probs=166.3
Q ss_pred CCchhhhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHhhcc-cceeeeeecccCCC-CCceEEEcc
Q 009013 6 ALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN-WKVKRQRVAAPASG-NEGFTIDLF 83 (546)
Q Consensus 6 ~lPnE~lsDlAvsaAtKLq~yRhlg~YfKqSAKalEQQv~rEarFYGALiRLQqN-WKVKRQR~~a~~PG-neGF~~Dl~ 83 (546)
+.|+....|.+|+...|++++++.+++||++|+.||+|++||.+||..++++++| |+|.|.|.... -| +-||.
T Consensus 84 ~~p~~~~~~~~vs~GwKl~sL~~Aa~~lk~AA~rLe~ev~~E~kYW~~il~vr~~gW~l~r~r~~r~-lGVkyGf~---- 158 (469)
T 4h63_Q 84 QPPESKESDATLAKCWKEKSLTSSCKFLFEAKERLTSVVETEHEYYTELVKVKEASWPLFNSQGSNH-LSVQYSCL---- 158 (469)
T ss_dssp CCCCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECTTTCS-EEECCSCS----
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCcc-cccccCcC----
Confidence 4577778899999999999999999999999999999999999999999999998 99999885443 33 55553
Q ss_pred CCCCCCCCCccCCCCCeeeeeccCCCceeeeecCCCceeeEEEeeecccCCCCcccccccccCCCCCCCcccccCCCchh
Q 009013 84 DNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDE 163 (546)
Q Consensus 84 d~s~~D~~~~~R~ssls~I~id~Ds~GmLav~vP~~~c~sL~~~f~g~~~~~~~k~~e~~~~~~~~~p~~~~~~s~~d~e 163 (546)
|.. + | .++.+|.+.|+..+.-...+....+.+++.... ..++. ...+. .+.+.. +++.
T Consensus 159 es~-----s--~--glA~lR~~~~~~~~~~~~~~~~~~~~lrV~I~~-~d~~~----~g~S~--~~~~~~------~~~~ 216 (469)
T 4h63_Q 159 GGI-----S--L--GLGLIRMKPESKSFEVQSSLLYSQAALKISILN-KDRDE----IGSST--WSWPSQ------NCNS 216 (469)
T ss_dssp CCS-----S--C--CCEEEEECTTTSCEEEECSCSCSCCEEEEEEEC-TTCCE----EEEEE--CCCCCC------CCSC
T ss_pred CCC-----C--c--ceeeeecCCCCCceeeccCCCCCceEEEEEEEe-cCCce----eeeec--CCCCCC------CCcc
Confidence 322 1 3 678889888887777766677778888887654 11110 00111 111111 1111
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHhhhhhc-ccCcceeecccchhhhhccccceeEEEEeecCCCCCCccccccccccc
Q 009013 164 CVREKHSLLREVHQAIFYEQVFDIVNREAFK-QSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVE 242 (546)
Q Consensus 164 ~vk~thslLR~ih~sIF~EQvFd~v~Reaf~-~s~g~nvtGi~E~~Lql~iGq~~sl~lsLv~s~q~~~~~~~~~~~~~~ 242 (546)
.+ ..-|++-+..||+|.+|..++|||=. .+.||.| +|+.+++.+++++.+.+.|++.+.+..+...+...+.+
T Consensus 217 ~i---~~~I~~AR~~IFEeELF~eL~REA~~L~s~gV~~---~~~~I~iel~~~~~i~ieLv~l~~~~~~~~~~~~~~~~ 290 (469)
T 4h63_Q 217 VL---LKDIYKLQEILFEMDIWNSLLQEAQSCGNQGVNF---TGDEILVPISDDHVVRITLETSSKNTESGFTEDKKSNE 290 (469)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCEE---CSSEEEEECSTTCEEEEEEECCC---------------
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEE---ecCEEEEEcCCCCEEEEEEecCCCccccccccCCCcch
Confidence 11 12244445569999999999999965 4556775 58999999999999999999988877555554444444
Q ss_pred ccccccccCCCc-cchhhhhhhhhcCCCCCCCchhHHHHHHHHHHHhhhcccCCccccccccCCCCCCCCCCchhhhhhh
Q 009013 243 SGILPLDSHDGV-KLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLS 321 (546)
Q Consensus 243 ~a~L~l~t~dg~-~~~~~~~~~~~~~~~~pN~~s~eIYLqq~Fhe~i~~k~~ek~~~~g~~~sg~~~~d~~gLL~HFc~s 321 (546)
++.....+.+.. ..++...+. =.++-+-|-..+|.++.+|-..-+..+.+..+.+ -||--..--
T Consensus 291 d~~a~~~~~~~~~~~~~~l~~~---------i~sl~~LL~~~hr~n~~rr~~~p~p~~~~~~~~P------~LLRPIi~~ 355 (469)
T 4h63_Q 291 DTSTNFVTIKQEKELLKCLCDT---------LNAIAHILFLKHCRKSDRRSQQPELYMAIDANAP------LILRPLIFY 355 (469)
T ss_dssp ---CCCSHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHTCC-------CCSCC------STHHHHHHH
T ss_pred hcccccccccchhhhHHHHHHH---------HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC------hhHHHHHHH
Confidence 432221111110 011000000 0123333444444455555444334444433332 277665555
Q ss_pred hhhhhccchhhhhhhh
Q 009013 322 LAHRIFSNKVHVELEN 337 (546)
Q Consensus 322 laHRifS~KV~~eLE~ 337 (546)
+.|+..-.....-|++
T Consensus 356 ~~~~~~~~~~~r~l~~ 371 (469)
T 4h63_Q 356 YNLNQESLEFQRWLKQ 371 (469)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6776555555555553
No 2
>4gwp_B Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_B 3rj1_B
Probab=99.67 E-value=4.4e-16 Score=167.24 Aligned_cols=294 Identities=11% Similarity=0.089 Sum_probs=191.1
Q ss_pred CCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhhHHHHH-hhcccceeeeeecccCCCCCceEEEc
Q 009013 4 PKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIR-LQQNWKVKRQRVAAPASGNEGFTIDL 82 (546)
Q Consensus 4 PK~lPnE~lsDlAvsaAtKLq~yRhlg~YfKqSAKalEQQv~rEarFYGALiR-LQqNWKVKRQR~~a~~PGneGF~~Dl 82 (546)
|.+.+.+...+-+|+..-|++++++.+.+||++|+.||+||+||.+||..+++ ++.||++.|.|....++..-|+.|.+
T Consensus 262 p~~~~s~~~~~~~vs~GwKl~aL~~aa~~l~~AA~rLe~ev~~E~kYW~~il~v~~~~w~i~r~r~~~~~~~~lGVkyGf 341 (687)
T 4gwp_B 262 VAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGY 341 (687)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSCCCEEEESSCSSSSEEEECCC
T ss_pred CCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCCCCCceeEEeccC
Confidence 33445566777789999999999999999999999999999999999999999 58899999999988888888888776
Q ss_pred cCCCCCCCCCccC-CCCCeeeeeccCCCceeee----------ecCCCceeeEEEeeecccCCCCcccccccccCCCCCC
Q 009013 83 FDNSLYDSAPVSR-PSSLSTIRIDHDSAGMLAI----------NLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRP 151 (546)
Q Consensus 83 ~d~s~~D~~~~~R-~ssls~I~id~Ds~GmLav----------~vP~~~c~sL~~~f~g~~~~~~~k~~e~~~~~~~~~p 151 (546)
.|. ++.|| ...++.+|.+.|+.++.-+ .++.+..+.+++..+.-.. .+......|...+
T Consensus 342 ~eS-----gs~Fr~drglA~LR~~~d~~~l~l~P~s~~~~~~~~~~~~~~k~lRVrI~~k~~-----~e~d~~lsG~S~~ 411 (687)
T 4gwp_B 342 EDS-----GSTYKHDRGIANIRNNIESQNLDLIPHSSSVFKGTDFVHSVKKFLRVRIFTKIE-----SEDDYILSGESVM 411 (687)
T ss_dssp SCC-----SSCCCSSCCCEEEECTTSCEEEECSCC------CCCSSCSSCEECCCCEEEECT-----TSCSCCEEEECCC
T ss_pred CCC-----chhhccccceeeeeccCCCCceeecccccccccccccccCCCceEEEEEEeecc-----CCCCceEeccccC
Confidence 554 57887 4799999999997655432 2344445555555443100 0000111133333
Q ss_pred CcccccCCCchhhHHHHHHHHHHHHHHhhHHHHHHhHhhhhhcc-cCcceeecccchhhhhccccceeEEEEeecCCCCC
Q 009013 152 SKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQ-SLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGD 230 (546)
Q Consensus 152 ~~~~~~s~~d~e~vk~thslLR~ih~sIF~EQvFd~v~Reaf~~-s~g~nvtGi~E~~Lql~iGq~~sl~lsLv~s~q~~ 230 (546)
+.....+..+++++.. .|++.+..||+|++|..++|||=.. +.||. ++++-..+-+.++..+-+.|++-+.+.
T Consensus 412 ~~~~~~~~~~~~~ie~---~I~~AR~~IFEEELF~eL~REAr~L~s~gV~---v~~~~i~i~~~~~~~i~ielv~ld~~~ 485 (687)
T 4gwp_B 412 DRDSESEEAETKDIRK---QIQLLKKIIFEKELMYQIKKECALLISYGVS---IENENKVIIELPNEKFEIELLSLDDDS 485 (687)
T ss_dssp CCSCSSCCCCTTCHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC---BTTTBCEEEETTTTEEEEECCTTCSEE
T ss_pred CcccccccccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCcee---EecCeeEEecCCCcEEEEEeccCCccc
Confidence 3333333345556655 4666678999999999999998554 44676 455667777788999999999765432
Q ss_pred CcccccccccccccccccccCCCccchhhhhhhhhcCCCCCCCchhHHHHHHHHHHHhhhcccCCccccccccCCCCCCC
Q 009013 231 LSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKD 310 (546)
Q Consensus 231 ~~~~~~~~~~~~~a~L~l~t~dg~~~~~~~~~~~~~~~~~pN~~s~eIYLqq~Fhe~i~~k~~ek~~~~g~~~sg~~~~d 310 (546)
.....+...+.++ . .++. -..++.+-|.++|..++-+|-.--+..+-+++ ..
T Consensus 486 ~~~~~~~~s~~~d---------~--~A~l------------I~~~LrLLL~~~hr~nlrrR~~~p~~lt~~~~----~~- 537 (687)
T 4gwp_B 486 IVNHEQDLPKIND---------K--RANL------------MLVMLRLLLVVIFKKTLRSRISSPHGLINLNV----DD- 537 (687)
T ss_dssp CCCCCCCCCCHHH---------H--HHHH------------HHHHHHHHHHHHHHHHHHHHHHSTTCCCSCCG----GG-
T ss_pred cccccccCCCCCc---------H--HHHH------------HHHHHHHHHHHHHHHHHhccCCCCCcccCCCC----CC-
Confidence 1111100000000 0 0000 12355666666666666555443222222211 11
Q ss_pred CCCchhhhhhhhhhhhccchhhhhhhhhhcC
Q 009013 311 GSGLLGHFCLSLAHRIFSNKVHVELENAVCG 341 (546)
Q Consensus 311 ~~gLL~HFc~slaHRifS~KV~~eLE~vV~~ 341 (546)
..-||.=..--+.|+.+-..+...|.+.|..
T Consensus 538 ~~~LLRPil~~lrH~~~~~~l~~~l~~~v~~ 568 (687)
T 4gwp_B 538 DILIIRPILGKVRFANYKLLLKKIIKDYVLD 568 (687)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2348877788889999888888888876543
No 3
>4h62_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=71.23 E-value=13 Score=37.38 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=84.1
Q ss_pred HHHHHHHhhHHHHHHhHhhhhhcc-cCcceeecccchhhhhccccceeEEEEeecCCCCCCccccccccccccccccccc
Q 009013 172 LREVHQAIFYEQVFDIVNREAFKQ-SLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDS 250 (546)
Q Consensus 172 LR~ih~sIF~EQvFd~v~Reaf~~-s~g~nvtGi~E~~Lql~iGq~~sl~lsLv~s~q~~~~~~~~~~~~~~~a~L~l~t 250 (546)
+++-...||+|.+|--++|||=.. +.||.+.+ +-..+-++++..+-+.|++-+.++...........++
T Consensus 54 I~~AR~~iFEeELf~eL~REAr~L~sygV~~~~---~~i~i~~~~~~~i~ielv~ld~~~~~~~~~~~~~~~d------- 123 (312)
T 4h62_Q 54 IQLLKKIIFEKELMYQIKKECALLISYGVSIEN---ENKVIIELPNEKFEIELLSLDDDSIVNHEQDLPKIND------- 123 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGGTEEEEE---TTEEEEECSSEEEEEEEECSSCC--------CCCTTH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCceEEec---CeEEEEcCCCCEEEEEeecCCCccccccccccCCcch-------
Confidence 333445699999999999998654 55677644 5566778899999999997665431111111110111
Q ss_pred CCCccchhhhhhhhhcCCCCCCCchhHHHHHHHHHHHhhhcccCCccccccccCCCCCCCCCCchhhhhhhhhhhhccch
Q 009013 251 HDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNK 330 (546)
Q Consensus 251 ~dg~~~~~~~~~~~~~~~~~pN~~s~eIYLqq~Fhe~i~~k~~ek~~~~g~~~sg~~~~d~~gLL~HFc~slaHRifS~K 330 (546)
..++. -..+|.+-|-.++-.++..|..-.+..+.+++. ...-||-=..--+.|+.+=..
T Consensus 124 ----~~A~~------------I~~~LrLLL~~aHr~nlr~R~~~P~~~tk~~~~-----~~~~LLRPil~~lrH~~~~~~ 182 (312)
T 4h62_Q 124 ----KRANL------------MLVMLRLLLVVIFKKTLRSRISSPHGLINLNVD-----DDILIIRPILGKVRFANYKLL 182 (312)
T ss_dssp ----HHHHH------------HHHHHHHHHHHHHHHHHHHHHTTTSSCCCCCHH-----HHCCSHHHHHHHHHHHHHHHH
T ss_pred ----HHHHH------------HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-----CCcccHHHHHHHHHHHHHHHH
Confidence 00100 124566666666666665555443333322221 123377777778999999999
Q ss_pred hhhhhhhhhcCc
Q 009013 331 VHVELENAVCGV 342 (546)
Q Consensus 331 V~~eLE~vV~~V 342 (546)
+...|++.|..+
T Consensus 183 l~~~l~~~vl~i 194 (312)
T 4h62_Q 183 LKKIIKDYVLDI 194 (312)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHHHHHhh
Confidence 999999888654
No 4
>4g7x_B TOLA protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=67.71 E-value=3 Score=37.12 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCCchhhhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhhHHHHH--hhcccce
Q 009013 5 KALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIR--LQQNWKV 63 (546)
Q Consensus 5 K~lPnE~lsDlAvsaAtKLq~yRhlg~YfKqSAKalEQQv~rEarFYGALiR--LQqNWKV 63 (546)
-.+||++++.|+-.++-.- + +-.||++-|.--|.++|+ +||||.+
T Consensus 19 s~~~ndi~agLe~e~~q~~------------~--a~~~~~~sev~~Y~a~I~~~Iq~nw~~ 65 (138)
T 4g7x_B 19 SHMPNDIFGSLSEESQQNN------------A--ARQQFVTSEVGRYGAIYTQLIRQNLLV 65 (138)
T ss_dssp -----------------CC------------H--HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CcchhHHHHHHHhhHHHHh------------H--hhhhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 3688999999876654322 1 235677888888999995 8999954
No 5
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=36.59 E-value=1.5e+02 Score=26.73 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhcceecc--ee-----------------eeEEEEecCCceEeEEEeeCCCC----------CCCceE
Q 009013 442 SQVIRWLHEEALMVGIKANR--DF-----------------LSLSFELDQGETVSLVAHVDPED----------MRGCIS 492 (546)
Q Consensus 442 sqvI~WLheEA~~vG~ka~R--DF-----------------LcL~FeL~qge~l~LVAhvdP~d----------~~gCIs 492 (546)
-|++.||.|+|..=|....+ || .+.++.-+.||-+ |||+|.|-- .++-+-
T Consensus 14 vell~Wl~eyA~~~g~~FekeaDFPDyIYRMeRPydLPTtvMsvsLS~~~geP~-l~a~vSprha~lK~islr~~g~h~h 92 (129)
T 3i9v_7 14 VELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPF-LLADVSPRHAKLKRIGLRLPRAHIH 92 (129)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHSCCSSCCCCSCSEEEEEEECSSSCEE-EEEEECCSSSSSCCEEEEETTTTEE
T ss_pred HHHHHHHHHHHHhcCCceeecccccHHHHhhcCcccCCceeEEEEeccCCCCee-EEEecCcchhhhcceEEecCCCcce
Confidence 38999999999988876654 44 5677777778876 788888864 356777
Q ss_pred EEEEeecccccc
Q 009013 493 WWLVMEDGFAAE 504 (546)
Q Consensus 493 W~L~m~~~f~~E 504 (546)
|-+..+++-+-.
T Consensus 93 wh~h~e~g~Gl~ 104 (129)
T 3i9v_7 93 LHAHYEPGKGLV 104 (129)
T ss_dssp EEEEEETTTEEE
T ss_pred eeeeecCCCccc
Confidence 888877554333
No 6
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=25.55 E-value=83 Score=29.68 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhcceecceee---------eEEEEec----CCceEeEEEeeC
Q 009013 443 QVIRWLHEEALMVGIKANRDFL---------SLSFELD----QGETVSLVAHVD 483 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDFL---------cL~FeL~----qge~l~LVAhvd 483 (546)
++..||.++...+|+++.+|-. ++...+. .|.+|.|-||.|
T Consensus 27 ~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nv~a~~~g~~~~~~~v~l~aH~D 80 (373)
T 3gb0_A 27 EICKVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTLPATKDGVDTIYFTSHMD 80 (373)
T ss_dssp HHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEeccccccCCCceeEEEEecCCCCCCCEEEEEEECc
Confidence 4455666666668999999874 5777774 356899999977
No 7
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=21.04 E-value=1.2e+02 Score=29.45 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhcceeccee--eeEEEEecCC--ceEeEEEeeCCC
Q 009013 443 QVIRWLHEEALMVGIKANRDF--LSLSFELDQG--ETVSLVAHVDPE 485 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDF--LcL~FeL~qg--e~l~LVAhvdP~ 485 (546)
++..||.+..-.+|+++.+|. -++...+..+ .+|.|.||+|==
T Consensus 49 ~~~~~l~~~l~~~G~~v~~~~~~~~l~a~~~~~~~~~i~l~aH~D~v 95 (418)
T 1xmb_A 49 ETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDAL 95 (418)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTTEEEEEEESSSSCEEEEEEECCCB
T ss_pred HHHHHHHHHHHHcCCeeEeccCCcEEEEEEcCCCCCEEEEEeccccc
Confidence 344566666666799988874 4677777654 489999998843
No 8
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=20.02 E-value=1.9e+02 Score=25.30 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcceeccee-----eeEEEEec-C---CceEeEEEeeC
Q 009013 443 QVIRWLHEEALMVGIKANRDF-----LSLSFELD-Q---GETVSLVAHVD 483 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDF-----LcL~FeL~-q---ge~l~LVAhvd 483 (546)
++..||.++.-.+|+++.+|- -.+...+. . +.+|.|.||+|
T Consensus 33 ~~~~~l~~~l~~~g~~~~~~~~~~g~~~~i~~~~g~~~~~~~ill~aH~D 82 (198)
T 1q7l_A 33 AAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSILLNSHTD 82 (198)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEETTEEEEEEEECCSSTTSCEEEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEEEEEcCCCCeEEEEEEccCCCCCCeEEEEeeec
Confidence 345666666667899888763 25666663 2 24799999977
No 9
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=19.91 E-value=1.4e+02 Score=28.44 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhcceecceee-------eEEEEec--CCceEeEEEeeCC
Q 009013 443 QVIRWLHEEALMVGIKANRDFL-------SLSFELD--QGETVSLVAHVDP 484 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDFL-------cL~FeL~--qge~l~LVAhvdP 484 (546)
++..||.++.-.+|+++.++-. ++...+. .+.+|.|.||+|=
T Consensus 43 ~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~v~a~~~g~~~~~i~l~aH~D~ 93 (393)
T 1cg2_A 43 AAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMDT 93 (393)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSSCCCEEEEEECCB
T ss_pred HHHHHHHHHHHHcCCeEEEEecCcCCCCCeEEEEECCCCCceEEEEEecCc
Confidence 3456666666678999887652 6777775 3468999999883
No 10
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=19.12 E-value=1.7e+02 Score=27.22 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhcceecceee--------eEEEEecC---CceEeEEEeeC
Q 009013 443 QVIRWLHEEALMVGIKANRDFL--------SLSFELDQ---GETVSLVAHVD 483 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDFL--------cL~FeL~q---ge~l~LVAhvd 483 (546)
++..||.++...+|+++.+|-. .+...+.- +++|-|.||.|
T Consensus 36 ~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~nvi~~~~g~~~~~~i~l~aH~D 87 (284)
T 1tkj_A 36 ASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDPNKVLMAGAHLD 87 (284)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEEEeccCCCCceeEEEEEeCCCCCCEEEEEeecC
Confidence 4566777777778999988843 57777742 35799999988
Done!