Query 009013
Match_columns 546
No_of_seqs 17 out of 19
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 16:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2grea2 c.56.5.4 (A:3-73,A:187 54.6 3 0.00022 36.9 2.6 50 442-491 24-77 (233)
2 d2fvga2 c.56.5.4 (A:1-64,A:149 25.0 31 0.0023 28.4 4.1 41 443-483 18-62 (255)
3 d2fug71 d.82.2.2 (7:3-129) NAD 23.4 71 0.0052 26.7 6.0 57 443-500 13-98 (127)
4 d1vhea2 c.56.5.4 (A:3-72,A:163 19.8 65 0.0048 27.0 5.2 42 443-484 24-69 (275)
5 d2i0za1 c.3.1.8 (A:1-192,A:362 19.3 71 0.0052 25.6 5.2 40 441-480 109-148 (251)
6 d1cg2a1 c.56.5.4 (A:26-213,A:3 18.9 85 0.0062 27.2 6.0 41 443-483 40-89 (276)
7 d2c7fa1 b.71.1.2 (A:2-16,A:387 18.9 31 0.0023 27.6 2.8 20 108-127 112-131 (131)
8 d1vpla_ c.37.1.12 (A:) Putativ 16.7 35 0.0025 29.9 2.7 17 465-481 20-36 (238)
9 d1b0ua_ c.37.1.12 (A:) ATP-bin 14.2 44 0.0032 29.7 2.7 17 465-481 20-36 (258)
10 d1l2ta_ c.37.1.12 (A:) MJ0796 14.2 44 0.0032 29.4 2.8 16 465-480 23-38 (230)
No 1
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}
Probab=54.60 E-value=3 Score=36.86 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhcceecceee-eEEEEec---CCceEeEEEeeCCCCCCCce
Q 009013 442 SQVIRWLHEEALMVGIKANRDFL-SLSFELD---QGETVSLVAHVDPEDMRGCI 491 (546)
Q Consensus 442 sqvI~WLheEA~~vG~ka~RDFL-cL~FeL~---qge~l~LVAhvdP~d~~gCI 491 (546)
.+++.|+.++...+|+++.+|-. ++.-.+. .+..+-++||+|=+|..||.
T Consensus 24 ~~~~~~i~~~l~~~G~~~~~d~~gniia~~~G~~~~~~i~~~aH~Dt~dk~g~a 77 (233)
T d2grea2 24 AKIINFIENYVSEWNVETKRNNKGALILTVKGKNDAQHRLLTAHVDTLDKVSVA 77 (233)
T ss_dssp HHHHHHHHHHTTTSSSEEEECSSSCEEEEECCSEEEEEEEEEEECCBCTHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCEEEEecCCCccccEEEEeccCccccCcHH
Confidence 46789999999999999999987 4555553 23368899999999988873
No 2
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}
Probab=25.02 E-value=31 Score=28.38 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhcceecceee-eEEEEec---CCceEeEEEeeC
Q 009013 443 QVIRWLHEEALMVGIKANRDFL-SLSFELD---QGETVSLVAHVD 483 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDFL-cL~FeL~---qge~l~LVAhvd 483 (546)
+|..||.++...+|.++.+|=+ .++-.+. .+..+-|.||+|
T Consensus 18 ~v~~~~~~~l~~~g~~v~~d~~gNii~~~~G~~~~~~i~l~aH~D 62 (255)
T d2fvga2 18 KVRDFIKSKIEGLVDNLYTDVLGNLIALKRGRDSSKKLLVSAHMD 62 (255)
T ss_dssp HHHHHHHHHHGGGSSEEEECTTSCEEEEECCSEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCCEEEEecCCCCCCceEEEeccc
Confidence 5678888888889999999843 4555553 344688999977
No 3
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=23.37 E-value=71 Score=26.73 Aligned_cols=57 Identities=30% Similarity=0.546 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcceecc--ee-----------------eeEEEEecCCceEeEEEeeCCCCC----------CCceEE
Q 009013 443 QVIRWLHEEALMVGIKANR--DF-----------------LSLSFELDQGETVSLVAHVDPEDM----------RGCISW 493 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~R--DF-----------------LcL~FeL~qge~l~LVAhvdP~d~----------~gCIsW 493 (546)
|++.|+.|+|..=|+.... || .+.++...-||-+ |+|.|.|--+ .+-+-|
T Consensus 13 ell~Wm~e~A~~rGv~feKeaDFPDyIYRMERpYdLPTTvMs~sls~~~G~p~-l~a~vSPRHa~lK~I~lr~~g~h~h~ 91 (127)
T d2fug71 13 ELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPF-LLADVSPRHAKLKRIGLRLPRAHIHL 91 (127)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECHHHHTCCSSCCCCSCSEEEEEEECSSCCEE-EEEEECCTTCBSCCEEEEETTTTEEE
T ss_pred HHHHHHHHHHHhcCCcceecccccHHHHhccccccCChhheEEeeccCCCCEE-EEEecCccceehheeEEecCCchhhe
Confidence 7999999999887776543 44 5777777778876 7788889754 567788
Q ss_pred EEEeecc
Q 009013 494 WLVMEDG 500 (546)
Q Consensus 494 ~L~m~~~ 500 (546)
-|+.+++
T Consensus 92 hlh~~~G 98 (127)
T d2fug71 92 HAHYEPG 98 (127)
T ss_dssp EEEEETT
T ss_pred eeeecCC
Confidence 8887754
No 4
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}
Probab=19.82 E-value=65 Score=27.03 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhcceecceee-eEEEEe---cCCceEeEEEeeCC
Q 009013 443 QVIRWLHEEALMVGIKANRDFL-SLSFEL---DQGETVSLVAHVDP 484 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDFL-cL~FeL---~qge~l~LVAhvdP 484 (546)
+|..||.+++-.+|.++.+|=. .|.=.+ +.+.++-|.||.|=
T Consensus 24 ~v~~~l~~~l~~~g~~~~~D~~gN~i~~~~g~~~~~~i~l~~H~D~ 69 (275)
T d1vhea2 24 EVRQVMKSYIEPFADEVTTDRLGSLIAKKTGAENGPKIMIAGHLDE 69 (275)
T ss_dssp HHHHHHHHHHGGGCSEEEECTTCCEEEEEESSTTSCEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCcEEEEecCCCCCCceeeeccccc
Confidence 4556666666788999999855 565556 45667999999773
No 5
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}
Probab=19.32 E-value=71 Score=25.57 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhcceecceeeeEEEEecCCceEeEEE
Q 009013 441 ASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVA 480 (546)
Q Consensus 441 AsqvI~WLheEA~~vG~ka~RDFLcL~FeL~qge~l~LVA 480 (546)
+.+++++|.++|...|+++....--..++.++|+..+++.
T Consensus 109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~ 148 (251)
T d2i0za1 109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVIL 148 (251)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEe
Confidence 4578999999999999988766666666777777666553
No 6
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}
Probab=18.93 E-value=85 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhcceeccee---------eeEEEEecCCceEeEEEeeC
Q 009013 443 QVIRWLHEEALMVGIKANRDF---------LSLSFELDQGETVSLVAHVD 483 (546)
Q Consensus 443 qvI~WLheEA~~vG~ka~RDF---------LcL~FeL~qge~l~LVAhvd 483 (546)
+++.||.++--.+|.+++++. +-.++.-..+.+|-|.+|+|
T Consensus 40 ~~a~~l~~~l~~lG~~~~~~~~~~~~~~~nv~a~~~g~~~~~vll~~H~D 89 (276)
T d1cg2a1 40 AAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMD 89 (276)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSSCCCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcCCEEEEEECCCCCCeEEEEeccc
Confidence 578888888888999998753 33344556678899999988
No 7
>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase {Clostridium thermocellum [TaxId: 1515]}
Probab=18.92 E-value=31 Score=27.59 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.2
Q ss_pred CCceeeeecCCCceeeEEEe
Q 009013 108 SAGMLAINLPPNSCRSFRFG 127 (546)
Q Consensus 108 s~GmLav~vP~~~c~sL~~~ 127 (546)
..|.|.+.|||-|+.-+++|
T Consensus 112 ~~~~l~~tlPp~S~~virLg 131 (131)
T d2c7fa1 112 DDGILTSMLRRASWNVIRIG 131 (131)
T ss_dssp CSSEEEEEECSSCEEEEEEC
T ss_pred eCCEEEEEECCCEEEEEEeC
Confidence 37999999999999999986
No 8
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}
Probab=16.75 E-value=35 Score=29.94 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=15.6
Q ss_pred eEEEEecCCceEeEEEe
Q 009013 465 SLSFELDQGETVSLVAH 481 (546)
Q Consensus 465 cL~FeL~qge~l~LVAh 481 (546)
.++|++.+||++|||..
T Consensus 20 ~vs~~v~~Gei~glvG~ 36 (238)
T d1vpla_ 20 GISFEIEEGEIFGLIGP 36 (238)
T ss_dssp EEEEEECTTCEEEEECC
T ss_pred cceeEEcCCCEEEEECC
Confidence 68999999999999974
No 9
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=14.22 E-value=44 Score=29.65 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=15.4
Q ss_pred eEEEEecCCceEeEEEe
Q 009013 465 SLSFELDQGETVSLVAH 481 (546)
Q Consensus 465 cL~FeL~qge~l~LVAh 481 (546)
.++|++.+||+++||..
T Consensus 20 ~vs~~i~~GEi~~iiG~ 36 (258)
T d1b0ua_ 20 GVSLQARAGDVISIIGS 36 (258)
T ss_dssp EEEEEECTTCEEEEECC
T ss_pred ceeeEEcCCCEEEEECC
Confidence 58999999999999974
No 10
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=14.17 E-value=44 Score=29.36 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=14.5
Q ss_pred eEEEEecCCceEeEEE
Q 009013 465 SLSFELDQGETVSLVA 480 (546)
Q Consensus 465 cL~FeL~qge~l~LVA 480 (546)
.++|++++||+++|+.
T Consensus 23 ~isl~i~~Ge~~~iiG 38 (230)
T d1l2ta_ 23 NVNLNIKEGEFVSIMG 38 (230)
T ss_dssp EEEEEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEEEEC
Confidence 5799999999999975
Done!