Query 009014
Match_columns 546
No_of_seqs 276 out of 1486
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 19:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2224 Uncharacterized conser 100.0 1.9E-49 4E-54 407.4 16.9 313 94-544 401-734 (781)
2 KOG2197 Ypt/Rab-specific GTPas 100.0 7.7E-43 1.7E-47 378.4 17.8 402 80-545 30-447 (488)
3 KOG1092 Ypt/Rab-specific GTPas 100.0 1.4E-38 3E-43 328.4 18.7 266 118-543 178-477 (484)
4 KOG4567 GTPase-activating prot 100.0 4E-38 8.7E-43 314.9 20.9 196 322-543 122-364 (370)
5 smart00164 TBC Domain in Tre-2 100.0 3E-31 6.6E-36 255.7 13.8 109 351-464 87-197 (199)
6 COG5210 GTPase-activating prot 100.0 2E-29 4.4E-34 276.4 17.9 172 322-520 258-443 (496)
7 KOG2058 Ypt/Rab GTPase activat 100.0 2.4E-29 5.1E-34 266.9 15.9 175 322-524 198-384 (436)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 2.2E-27 4.8E-32 229.7 18.1 157 322-506 48-214 (214)
9 KOG2223 Uncharacterized conser 99.9 2.7E-24 5.9E-29 222.8 18.3 184 323-536 358-552 (586)
10 KOG1091 Ypt/Rab-specific GTPas 99.9 1.1E-22 2.5E-27 216.8 16.5 196 320-540 104-363 (625)
11 KOG2222 Uncharacterized conser 99.9 4.8E-21 1E-25 200.1 15.5 187 322-537 213-416 (848)
12 KOG1093 Predicted protein kina 99.8 8.5E-20 1.8E-24 195.1 14.0 191 322-541 392-592 (725)
13 KOG4436 Predicted GTPase activ 99.8 3.6E-18 7.8E-23 187.9 17.6 183 312-523 610-807 (948)
14 KOG2595 Predicted GTPase activ 99.6 1.4E-15 3.1E-20 154.8 13.4 163 351-542 139-303 (395)
15 KOG1102 Rab6 GTPase activator 99.6 1.3E-15 2.8E-20 163.0 9.7 175 322-527 187-373 (397)
16 KOG4347 GTPase-activating prot 99.5 1.6E-14 3.4E-19 157.4 10.2 166 324-519 247-421 (671)
17 KOG2197 Ypt/Rab-specific GTPas 99.4 3.5E-13 7.7E-18 147.3 6.5 342 94-546 144-488 (488)
18 KOG3636 Uncharacterized conser 99.3 1.6E-11 3.4E-16 128.9 12.6 160 350-538 105-270 (669)
19 KOG1648 Uncharacterized conser 99.1 9.4E-12 2E-16 131.7 -1.2 281 94-544 527-807 (813)
20 KOG2221 PDZ-domain interacting 98.9 3.1E-10 6.7E-15 110.2 1.9 115 320-440 142-267 (267)
21 KOG4436 Predicted GTPase activ 98.6 5.8E-08 1.3E-12 108.5 7.1 169 323-520 230-418 (948)
22 KOG2224 Uncharacterized conser 98.5 2.3E-08 5.1E-13 104.8 1.8 75 315-394 487-574 (781)
23 KOG2801 Probable Rab-GAPs [Int 94.3 0.24 5.2E-06 50.9 9.3 156 352-539 127-293 (559)
24 PF14961 BROMI: Broad-minded p 93.3 0.4 8.6E-06 57.6 9.9 115 406-543 1166-1281(1296)
25 COG2987 HutU Urocanate hydrata 76.8 2 4.4E-05 46.8 3.0 148 15-179 153-314 (561)
26 TIGR01228 hutU urocanate hydra 76.1 11 0.00024 41.8 8.4 62 118-179 236-305 (545)
27 PRK05414 urocanate hydratase; 72.4 3.9 8.4E-05 45.4 3.9 62 118-179 245-314 (556)
28 PF12301 CD99L2: CD99 antigen 41.1 26 0.00057 33.7 3.2 32 51-82 110-141 (169)
29 PF14086 DUF4266: Domain of un 40.7 16 0.00034 28.2 1.3 15 35-49 33-47 (50)
30 KOG2595 Predicted GTPase activ 25.1 76 0.0016 34.0 3.6 19 126-144 58-77 (395)
31 KOG2221 PDZ-domain interacting 20.7 45 0.00097 33.6 0.9 22 125-146 100-121 (267)
No 1
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-49 Score=407.36 Aligned_cols=313 Identities=24% Similarity=0.445 Sum_probs=249.4
Q ss_pred cCCCCCHHHHhh-ccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009014 94 RKHALLPKQWKT-FFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKEC 172 (546)
Q Consensus 94 r~~pls~~~W~~-~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw 172 (546)
..+.++...|.. .+++-|.|.+. .++||.||+|||+-++|++||||||.+|.+.||.++|+.++..||+||+++.++-
T Consensus 401 ~~kki~~n~~~~t~lne~gqiedd-~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkr 479 (781)
T KOG2224|consen 401 DVKKIGTNAFLGTHLNEKGQIEDD-LKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKR 479 (781)
T ss_pred hhhhhhHHHHHHhhhhhcccchhH-HHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 456677778876 89999999987 7899999999999999999999999999999999999999999999999997644
Q ss_pred -HHhhhhcccccccccccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCc
Q 009014 173 -RKIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDE 251 (546)
Q Consensus 173 -~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~ 251 (546)
++|.+++.- .||+....+.+|||.||||+ +.||-|||+
T Consensus 480 lysmspeeh~-----------------~fwknvq~tvdkdvvrtdrn------------------------n~ff~gddn 518 (781)
T KOG2224|consen 480 LYSMSPEEHI-----------------AFWKNVQFTVDKDVVRTDRN------------------------NPFFCGDDN 518 (781)
T ss_pred hhcCCHHHHH-----------------HHHhheEEEEecceeeccCC------------------------CCcccCCCC
Confidence 478776432 35655667789999999997 578989888
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhc
Q 009014 252 RDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRA 331 (546)
Q Consensus 252 ~~t~~l~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT 331 (546)
|++ +.+++|+.
T Consensus 519 pn~---------------------------------------------------------------e~mk~ill------ 529 (781)
T KOG2224|consen 519 PNT---------------------------------------------------------------ESMKNILL------ 529 (781)
T ss_pred CcH---------------------------------------------------------------HHHHHHHH------
Confidence 774 23344443
Q ss_pred CCCCccCCcchhhhh---hhhh--------------ccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhchh
Q 009014 332 NSEWTIYSPSQAAVS---EMKA--------------QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARH 394 (546)
Q Consensus 332 ~p~~~~f~~~~~~v~---~~~~--------------~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~~ 394 (546)
+++.|++..+|-+ .+-+ .-+|..|||+ |+++|+|.-+ ++|.|+||||++||.+.-.
T Consensus 530 --n~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgms--dlvapilaev---ldesdtfwcfvglmqna~f 602 (781)
T KOG2224|consen 530 --NFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMS--DLVAPILAEV---LDESDTFWCFVGLMQNAFF 602 (781)
T ss_pred --hheeecccccccccchhhcchhhhhhccccchhhhhhhhhccch--hhhhhHHHhh---hccccchhhhhhhhcceEE
Confidence 3566665321110 0000 0134444444 3344444321 4777777777777765332
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCC--cccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccc
Q 009014 395 NFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAE--DCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIA 472 (546)
Q Consensus 395 ~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~--~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~ 472 (546)
.-.+....|..++..|++||+.++|.+|+||+++|-+ .++||+||++++|+||||-..++|||+..|+++
T Consensus 603 v~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y-------- 674 (781)
T KOG2224|consen 603 VCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHY-------- 674 (781)
T ss_pred EeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh--------
Confidence 2344556788999999999999999999999999865 479999999999999999999999999999998
Q ss_pred cccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhh
Q 009014 473 KSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHA 544 (546)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~~~ 544 (546)
.++.|++|+|+||+-.+.+..+.+....|++|-+|.+|+++||-+-+|++|+.|.++|+.
T Consensus 675 ------------~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~qfr~ 734 (781)
T KOG2224|consen 675 ------------LTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQFRL 734 (781)
T ss_pred ------------hHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHHHhh
Confidence 367999999999999999999988899999999999999999999999999999999864
No 2
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-43 Score=378.41 Aligned_cols=402 Identities=29% Similarity=0.463 Sum_probs=279.2
Q ss_pred cCCCCCCCCCcccccCCCCCHHHHhhccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 009014 80 SHRGSLKSPWSRRRRKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKA 159 (546)
Q Consensus 80 ~~r~~~~~~~~~~~r~~pls~~~W~~~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~ 159 (546)
+.+.+.+.+|..+++..+++.+.|.+.|+++|++... .++.+.|..|||+|++|.|||+||||+|+.++|.+||..++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~~-~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~ 108 (488)
T KOG2197|consen 30 EPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSGF-VKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRV 108 (488)
T ss_pred ccccccCCcceeeccccccchhhhhhccCCCccccch-hhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHh
Confidence 3566677799999999999999999999999999974 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccc------cccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCC
Q 009014 160 EKRKEYENLRKECRKIIHRYEKSSKLK------ETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDH 233 (546)
Q Consensus 160 ~kr~eY~~lk~qw~~~~~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~ 233 (546)
.++.+|..|+.+|+.+.+.....-... +...++.+.+.+.........+..++.. +
T Consensus 109 ~~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~~~~~~~~~--~---------------- 170 (488)
T KOG2197|consen 109 ARRPQYNELLLVCQMMKSTVGNGLSYVVSSVVSDNRSPSLTLEEYNSNAMREGRLDESVHQ--R---------------- 170 (488)
T ss_pred hcccchHHHHHHcchhhhhhccccceeeeEEeecCCCCcchhhhhhhhhhhccccccchhh--h----------------
Confidence 999999999999999987543220110 0000000000000000000000000000 0
Q ss_pred CCCCCCCCCccccCCCCcccccccccccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCC
Q 009014 234 PVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYT 313 (546)
Q Consensus 234 p~~~~~~~~~~~~~~dd~~~t~~l~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 313 (546)
..++.+.-....+... -+...+ -+.....+++....-....+... .+. ............
T Consensus 171 ---------~~~~~~~~~~~l~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~k~----qW~~~~~~~~~~ 230 (488)
T KOG2197|consen 171 ---------ERIFSGGLSKSLRAEV--WKFLLD-YSPWDSTTRERVSLRKLTDEYFR----LKL----QWSSTSPEQSPE 230 (488)
T ss_pred ---------heecccccccchhhhh--hhhhhc-ccCcccccccccccccccccHhh----hhh----hheecccccccc
Confidence 0111110000000000 000000 00000000000000000000000 000 000000000111
Q ss_pred hhhHHHHHHHHHHhhhhcCCCCccCCc-chhhhhhhh---------hccccccccCChhhhhhhHHHHhhcccchHHHHH
Q 009014 314 DEDFATWQRIIRLDAVRANSEWTIYSP-SQAAVSEMK---------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFW 383 (546)
Q Consensus 314 ~e~l~~l~~~I~~Dv~RT~p~~~~f~~-~~~~v~~~~---------~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFW 383 (546)
.+-..+....|.+||.||.+.+.+|.. ++..+.... ...+||||||+ |+++|+++. +.+|.+|||
T Consensus 231 ~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmS--Dllspi~~v---~~de~~aFw 305 (488)
T KOG2197|consen 231 SEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMS--DLLSPILIV---MEDEVEAFW 305 (488)
T ss_pred ccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCch--hhcCcceee---ecCchHHHH
Confidence 111345567799999999999999874 111122222 23899999999 579998643 459999999
Q ss_pred HHHHHHHhchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhc
Q 009014 384 CFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWAD 463 (546)
Q Consensus 384 cF~~lM~~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~ 463 (546)
||++||+++++||..++.||+.|+..+..+++..||.||+||++++.++++|||||+++.|+|||.++++++||+++|+.
T Consensus 306 cFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~ 385 (488)
T KOG2197|consen 306 CFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTD 385 (488)
T ss_pred HHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 009014 464 QAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLH 543 (546)
Q Consensus 464 ~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~~ 543 (546)
.+ ..+|++|++.+++-+.++.|+.+..+++++++++|.+..+.|+..++..|..+..+.+
T Consensus 386 ~~--------------------~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k 445 (488)
T KOG2197|consen 386 LP--------------------SPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNK 445 (488)
T ss_pred Cc--------------------cchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHH
Confidence 84 3489999999999999999999889999999999999999999999999999998776
Q ss_pred hc
Q 009014 544 AK 545 (546)
Q Consensus 544 ~~ 545 (546)
..
T Consensus 446 ~~ 447 (488)
T KOG2197|consen 446 QM 447 (488)
T ss_pred hc
Confidence 54
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-38 Score=328.38 Aligned_cols=266 Identities=23% Similarity=0.409 Sum_probs=213.5
Q ss_pred HHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCC
Q 009014 118 VKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRYEKSSKLKETTGKSSNEDS 197 (546)
Q Consensus 118 ~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw~~~~~~~~~~~~~~~~~~~s~~~~~ 197 (546)
.+.++.+.++||+...|+.||++|+||.|.++. -|+...+.|++||..++.++....... +
T Consensus 178 ~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~~---------------~-- 238 (484)
T KOG1092|consen 178 LEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTNG---------------D-- 238 (484)
T ss_pred HHHHHHHccCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCCc---------------c--
Confidence 477889999999999999999999999999855 888999999999999988764211100 0
Q ss_pred CCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCcccccccccccCCCCCCCCCCCCCCcc
Q 009014 198 GDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTCEDASAGDTESTDSDSSED 277 (546)
Q Consensus 198 ~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~~~t~~l~~~~~~~~~~~s~~~~~s~~ 277 (546)
T Consensus 239 -------------------------------------------------------------------------------- 238 (484)
T KOG1092|consen 239 -------------------------------------------------------------------------------- 238 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhcCCCCccCCcchhhhhh-----hh---
Q 009014 278 LENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYSPSQAAVSE-----MK--- 349 (546)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT~p~~~~f~~~~~~v~~-----~~--- 349 (546)
+++.++ |||..|++||+|.-.+|.....+... +|
T Consensus 239 -------------------------------------~~~d~~-rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwair 280 (484)
T KOG1092|consen 239 -------------------------------------EDQDTW-RQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIR 280 (484)
T ss_pred -------------------------------------ccCccc-cccccCCCCCCccccchhhHHHHHHHHHHHHHHHHh
Confidence 000111 34445555555555454332211111 11
Q ss_pred hccccccccCChhhhhhhHHHHhhc----c------------------cchHHHHHHHHHHHHhchhCCCCCcHHHHHHH
Q 009014 350 AQRSAQIVGLKDYDHLEPSRIYHAA----R------------------LEDHEAFWCFAGFMKKARHNFRLDEVGIRRQL 407 (546)
Q Consensus 350 ~~~igY~QGMnd~dllaP~L~y~~~----~------------------ldE~dAFWcF~~lM~~~~~~F~~~~~gm~~~l 407 (546)
...+||+||.|| +..|+++.+.. . ..|+|||||+.+|++.+++||..-|+|++++.
T Consensus 281 hpAsGyvqgind--lvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV 358 (484)
T KOG1092|consen 281 HPASGYVQGIND--LVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKV 358 (484)
T ss_pred ccccccccccee--eechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHH
Confidence 236899999995 58888754311 0 16999999999999999999999999999999
Q ss_pred HHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCC
Q 009014 408 SIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTD 487 (546)
Q Consensus 408 ~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~ 487 (546)
..|++|++.+|++||+||+++|++-+.|+|||+.|||.||||+..++||||.+++++. +..
T Consensus 359 ~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~d-------------------gf~ 419 (484)
T KOG1092|consen 359 KNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPD-------------------GFN 419 (484)
T ss_pred HHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCcc-------------------chH
Confidence 9999999999999999999999999999999999999999999999999999999964 235
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhh
Q 009014 488 DLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDLVVTLH 543 (546)
Q Consensus 488 ~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~----lDv~~lL~~A~~L~~~~~ 543 (546)
+|++|+|||.|++++++|++ +||.++|.+|++++.+ -|++.||+.|..+-.-+.
T Consensus 420 ~FhvYvcAAFL~kW~~eL~e--~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~ 477 (484)
T KOG1092|consen 420 EFHVYVCAAFLLKWSSELME--NDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFS 477 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999997 7999999999999943 489999999987765543
No 4
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=4e-38 Score=314.86 Aligned_cols=196 Identities=24% Similarity=0.435 Sum_probs=169.5
Q ss_pred HHHHHhhhhcCCCCccCCcchhhh-----------h-h---------------hh--------hccccccccCChhhhhh
Q 009014 322 RIIRLDAVRANSEWTIYSPSQAAV-----------S-E---------------MK--------AQRSAQIVGLKDYDHLE 366 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~~~v-----------~-~---------------~~--------~~~igY~QGMnd~dlla 366 (546)
.||++|+.||+|+-.+|.....+. . . ++ .+.|||||||| ++++
T Consensus 122 ~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMN--EIla 199 (370)
T KOG4567|consen 122 LQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMN--EILA 199 (370)
T ss_pred HHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhH--HHhh
Confidence 589999999999999886421111 0 0 00 24899999999 7899
Q ss_pred hHHHHhhcc--------cchHHHHHHHHHHHHhchhCCCC----CcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCccc
Q 009014 367 PSRIYHAAR--------LEDHEAFWCFAGFMKKARHNFRL----DEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCF 434 (546)
Q Consensus 367 P~L~y~~~~--------ldE~dAFWcF~~lM~~~~~~F~~----~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~ 434 (546)
|++ |+.+. ..|+|||+||+.||..+++||.. ...|++..+..+.++|+..|-+||.||+..++.|.+
T Consensus 200 PiY-YVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~Pqf 278 (370)
T KOG4567|consen 200 PIY-YVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQF 278 (370)
T ss_pred hhh-eeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccc
Confidence 985 55432 26999999999999999999954 246899999999999999999999999999999999
Q ss_pred chHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHH
Q 009014 435 FVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDE 514 (546)
Q Consensus 435 F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fde 514 (546)
|+|||+.+|++.|||+++|+||||.++++.. ..++++++|+|+|+..|+.||+ .+|+.
T Consensus 279 yaFRWitLLLsQEF~lpDvi~lWDsl~sD~~--------------------rfd~Ll~iCcsmlil~Re~il~--~DF~~ 336 (370)
T KOG4567|consen 279 YAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ--------------------RFDFLLYICCSMLILVRERILE--GDFTV 336 (370)
T ss_pred hhHHHHHHHHhccCCchhHHHHHHHHhcChh--------------------hhHHHHHHHHHHHHHHHHHHHh--cchHH
Confidence 9999999999999999999999999999973 4689999999999999999999 69999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 009014 515 IMRECNSMAGHLDVWKLLDDAHDLVVTLH 543 (546)
Q Consensus 515 iL~~ln~L~~~lDv~~lL~~A~~L~~~~~ 543 (546)
.|+.|++.+ ..|+..++..|..|-.+=|
T Consensus 337 nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 337 NMKLLQNYP-TTDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhccc
Confidence 999999998 7999999999998876544
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.97 E-value=3e-31 Score=255.65 Aligned_cols=109 Identities=27% Similarity=0.565 Sum_probs=98.7
Q ss_pred ccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhchhC-CCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHh-c
Q 009014 351 QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHN-FRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQ-L 428 (546)
Q Consensus 351 ~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~~~-F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~-~ 428 (546)
.++||||||+ +++++++.++ .+|++|||||+++|++.... |..+..++...+..+..+|+..+|+||+||++ .
T Consensus 87 p~~gY~QGm~--~i~~~ll~~~---~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~ 161 (199)
T smart00164 87 PEVGYCQGMN--FLAAPLLLVM---PDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKL 161 (199)
T ss_pred CCCceeccHH--HHHHHHHHhc---CCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhc
Confidence 3689999999 5688887543 27999999999999996655 66777899999999999999999999999996 9
Q ss_pred CCCcccchHHHHHHhhcccCChhhHHHHHHHHHhch
Q 009014 429 QAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQ 464 (546)
Q Consensus 429 ~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~ 464 (546)
++++.+|+++|++++|+++||++.++||||.++++|
T Consensus 162 ~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 162 GIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred CCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 6
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.96 E-value=2e-29 Score=276.44 Aligned_cols=172 Identities=19% Similarity=0.360 Sum_probs=134.6
Q ss_pred HHHHHhhhhcCCCCccCCcchhhhh--h--------hhhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHH-
Q 009014 322 RIIRLDAVRANSEWTIYSPSQAAVS--E--------MKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMK- 390 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~~~v~--~--------~~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~- 390 (546)
++|.+||.||+|++..|........ . .....+||||||| .+++|++.|+ ..|++|||||++||+
T Consensus 258 ~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn--~l~a~ll~~~---~~Ee~AF~~l~~L~~~ 332 (496)
T COG5210 258 SQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMN--FLAAPLLLVL---ESEEQAFWCLVKLLKN 332 (496)
T ss_pred HHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHH--HHHHHHHHHh---hhhHHHHHHHHHHHHh
Confidence 4566677777776666643222111 1 1124899999999 5799998875 249999999999999
Q ss_pred -hchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhh
Q 009014 391 -KARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 469 (546)
Q Consensus 391 -~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~ 469 (546)
.+..+|..++.|+..++.++..+++.++|+||+||...++...+|++|||+++|.++||++.++||||++|++|.
T Consensus 333 ~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~---- 408 (496)
T COG5210 333 YGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS---- 408 (496)
T ss_pred ccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc----
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhh--CCCHHHHHHHHh
Q 009014 470 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEK--YSSMDEIMRECN 520 (546)
Q Consensus 470 g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~--~~~fdeiL~~ln 520 (546)
.+++-+.+|++...+..++.. ...++.++..++
T Consensus 409 ------------------~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 443 (496)
T COG5210 409 ------------------SMLFQLALAILKLLRDKLLKLDSDELLDLLLKQLF 443 (496)
T ss_pred ------------------HHHHHHHHHHHHhhhhhhhccCchhHHHHHHHhhh
Confidence 444444556666677776662 233344444443
No 7
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-29 Score=266.86 Aligned_cols=175 Identities=15% Similarity=0.266 Sum_probs=143.9
Q ss_pred HHHHHhhhhcCCCC-ccCCcchhh-hhhh---------hhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHH
Q 009014 322 RIIRLDAVRANSEW-TIYSPSQAA-VSEM---------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMK 390 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~-~~f~~~~~~-v~~~---------~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~ 390 (546)
+||++|+.||||++ +.|....+. +..+ +.+.||||||||. +++++|++ +-.|++|||||+.+++
T Consensus 198 ~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNf--lAallLL~---~~~EE~AFW~Lv~iie 272 (436)
T KOG2058|consen 198 KQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNF--LAALLLLL---MPSEEDAFWMLVALIE 272 (436)
T ss_pred HHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHH--HHHHHHHh---cCChHHHHHHHHHHHH
Confidence 57899999999999 677653331 2222 2358999999995 35665544 2249999999999999
Q ss_pred h-chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhh
Q 009014 391 K-ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 469 (546)
Q Consensus 391 ~-~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~ 469 (546)
+ +..+|.+++.|.+....+|..+++..+|+|+.||+.++++-.+|++.|||++|+...|.+.++||||++|++|.
T Consensus 273 ~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGs---- 348 (436)
T KOG2058|consen 273 NYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGS---- 348 (436)
T ss_pred HhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhccc----
Confidence 9 45678999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCC
Q 009014 470 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAG 524 (546)
Q Consensus 470 g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~ 524 (546)
++++-+++|++..++++|++ +.+..++++++..+..
T Consensus 349 ------------------kvlfr~Alai~k~~ee~il~-~~~~~~i~~~~~~~~~ 384 (436)
T KOG2058|consen 349 ------------------KVLFRVALAILKKHEEEILK-EDSSKEILRVLPDLTK 384 (436)
T ss_pred ------------------HHHHHHHHHHHHHhHHHHhc-CCCHHHHHHHHHHHHH
Confidence 44443566666668888887 6888899999877653
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.95 E-value=2.2e-27 Score=229.67 Aligned_cols=157 Identities=25% Similarity=0.439 Sum_probs=124.4
Q ss_pred HHHHHhhhhcCCCCccCCcchhhhhhh--------hhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHH-Hhc
Q 009014 322 RIIRLDAVRANSEWTIYSPSQAAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFM-KKA 392 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~~~v~~~--------~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM-~~~ 392 (546)
++|.+|+.||+++...+.......... ...++||+|||+ ++++|++.. .++|++|||||+++| ...
T Consensus 48 ~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~--~i~~~ll~~---~~~e~~af~~~~~l~~~~~ 122 (214)
T PF00566_consen 48 EQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMN--DIAAPLLLV---FLDEEEAFWCFVQLLNYYL 122 (214)
T ss_dssp HHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHH--HHHHHHHHT---CSHHHHHHHHHHHHHTHHG
T ss_pred HHHHHhhhhhcccchhhhhcchHHHHHHHHHHhccccccccccchhh--hhhhhhhhh---cccccchhccccchhcccc
Confidence 567888888888444443322221111 124799999999 568887632 248999999999999 557
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccc
Q 009014 393 RHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIA 472 (546)
Q Consensus 393 ~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~ 472 (546)
...|..+..+++..+..+..+++.++|+|++||++.++++..|+++|++++|++++|++.++|||| ++.+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~------- 194 (214)
T PF00566_consen 123 PDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGY------- 194 (214)
T ss_dssp GGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCT-------
T ss_pred cccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCC-------
Confidence 888998889999999999999999999999999999999999999999999999999999999999 666652
Q ss_pred cccccccccCCCCCCcH-HHHHHHHHHHHHHHHHH
Q 009014 473 KSAWGRMRLRAPPTDDL-LLYAIAACVLQRRKLII 506 (546)
Q Consensus 473 ~~~~~~~~~~~~~~~~~-~lfi~aAiLl~~r~~IL 506 (546)
.+ ++++++|++...|++||
T Consensus 195 ---------------~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 195 ---------------KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp ---------------THHHHHHHHHHHHHTHHHHH
T ss_pred ---------------CcHHHHHHHHHHHHHHHHhC
Confidence 45 78888888877899886
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=222.76 Aligned_cols=184 Identities=14% Similarity=0.285 Sum_probs=157.7
Q ss_pred HHHHhhhhcCCCCccCCcchhhhhhhh---------hccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh--
Q 009014 323 IIRLDAVRANSEWTIYSPSQAAVSEMK---------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK-- 391 (546)
Q Consensus 323 ~I~~Dv~RT~p~~~~f~~~~~~v~~~~---------~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~-- 391 (546)
+|.+|+.||||.+.+|+.+.+|.-.++ ..++||+|||+. ++.+|+. .+++++||-||.+|+++
T Consensus 358 ~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSF---IaAvLll---nmd~~~AFiafANLLdkp~ 431 (586)
T KOG2223|consen 358 LIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSF---IAAVLLL---NMDLADAFIAFANLLDKPC 431 (586)
T ss_pred heeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHH---HHHHHHH---cCCcHHHHHHHHHHhccHH
Confidence 688999999999999998777654333 248999999995 3554433 35999999999999999
Q ss_pred chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhcc
Q 009014 392 ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGI 471 (546)
Q Consensus 392 ~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~ 471 (546)
...+|..|.+-|...+..+...++...|+|+.||+++++.|-+|.+.|+.++|...+|++..+||||+|+-+|.
T Consensus 432 q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdge------ 505 (586)
T KOG2223|consen 432 QQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE------ 505 (586)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecch------
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009014 472 AKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAH 536 (546)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~ 536 (546)
.|++-.+++|+..+.+.|+. +||..|.++|..++.++-.+++...-.
T Consensus 506 ----------------eFlfr~~lgIlklyepkLl~--mDf~~~~qfLtklp~dL~~eelF~~i~ 552 (586)
T KOG2223|consen 506 ----------------EFLFRTALGILKLYEPKLLV--MDFIHVAQFLTKLPEDLTPEELFMHIA 552 (586)
T ss_pred ----------------HHHHHHHHHHHHHccchHhh--hhHHHHHHHHHhCcccCCHHHHHHHHH
Confidence 66666666666668888887 999999999999999998777765543
No 10
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-22 Score=216.80 Aligned_cols=196 Identities=18% Similarity=0.224 Sum_probs=151.5
Q ss_pred HHHHHHHhhhhcCCCC-ccCCcchhh-----hhhhhh---ccccccccCChhhhhhhHHHHhhc---------------c
Q 009014 320 WQRIIRLDAVRANSEW-TIYSPSQAA-----VSEMKA---QRSAQIVGLKDYDHLEPSRIYHAA---------------R 375 (546)
Q Consensus 320 l~~~I~~Dv~RT~p~~-~~f~~~~~~-----v~~~~~---~~igY~QGMnd~dllaP~L~y~~~---------------~ 375 (546)
+...|.+|+.||||++ .+|....-+ +..+++ .++||.|||. +++||++ |++- .
T Consensus 104 L~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMH--ElLAPl~-fVl~~D~q~l~h~se~~~~~ 180 (625)
T KOG1091|consen 104 LEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMH--ELLAPLL-FVLHVDNQALLHVSESLFDK 180 (625)
T ss_pred HHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhh--hhhhhhh-hheehhHHHHHHHHHhhhhh
Confidence 4567999999999999 677653222 112222 4899999999 7899986 3321 0
Q ss_pred c-------------chHHHH--HHHHHHHHhchhCC------------C------------CCcHHHHHHHHHHHHHHHh
Q 009014 376 L-------------EDHEAF--WCFAGFMKKARHNF------------R------------LDEVGIRRQLSIVSKIIKC 416 (546)
Q Consensus 376 l-------------dE~dAF--WcF~~lM~~~~~~F------------~------------~~~~gm~~~l~~l~~LLk~ 416 (546)
+ .+.+++ =.|+.+|......| . +..+-+......+..++..
T Consensus 181 l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~ 260 (625)
T KOG1091|consen 181 LGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAK 260 (625)
T ss_pred cCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhh
Confidence 0 233444 35666665322222 1 1123345566778899999
Q ss_pred hcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHH-HHHhchhhhhhccccccccccccCCCCCCcHHHHHHH
Q 009014 417 KDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWE-VIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIA 495 (546)
Q Consensus 417 ~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD-~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~a 495 (546)
.|+.|+.||.++|+.|.+|..||+.+||.||||+.+++-+|| +++.++ |...++.++++
T Consensus 261 ~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~--------------------pr~~Lv~~m~V 320 (625)
T KOG1091|consen 261 VDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDS--------------------PRGILVACMFV 320 (625)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccC--------------------chHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 888887 35688999999
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 009014 496 ACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVV 540 (546)
Q Consensus 496 AiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~ 540 (546)
++|+..|+.|+. .+...+|+++-+.+..+|+++++..|..+..
T Consensus 321 smLL~IRd~Lls--s~~~tcL~~Lm~yP~~~Dv~~~iekAl~l~~ 363 (625)
T KOG1091|consen 321 SMLLYIRDSLLS--SEYQTCLQYLMNYPEIIDVDKFIEKALHLQK 363 (625)
T ss_pred HHHHHHHHHHHH--hcchhHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 999999999998 4666799999999999999999999987653
No 11
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.86 E-value=4.8e-21 Score=200.13 Aligned_cols=187 Identities=18% Similarity=0.344 Sum_probs=150.8
Q ss_pred HHHHHhhhhcCCCCccCCcchhh-hhhhhh---------ccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh
Q 009014 322 RIIRLDAVRANSEWTIYSPSQAA-VSEMKA---------QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 391 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~~~-v~~~~~---------~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~ 391 (546)
.||++|+.|+.|++..|....+. +..++. +++||||||.. +++-+|+|| .|+.|||+...+++.
T Consensus 213 ~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gv--iva~lllf~----~ee~afwmmaaiied 286 (848)
T KOG2222|consen 213 KQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGV--IVACLLLFC----EEENAFWMMAAIIED 286 (848)
T ss_pred HHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccH--HHHHHHHHh----cchhHHHHHHHHHHH
Confidence 47888999999988877653321 222221 48999999996 488888886 799999999999998
Q ss_pred -chhCC-CCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhh
Q 009014 392 -ARHNF-RLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 469 (546)
Q Consensus 392 -~~~~F-~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~ 469 (546)
+..+| ....-|++..-.+...|++.+.|.|-+.|++++++-.+.+..||++||...|.....+||||.||.+|
T Consensus 287 ilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g----- 361 (848)
T KOG2222|consen 287 ILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEG----- 361 (848)
T ss_pred hcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecC-----
Confidence 45555 55677899999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHH-HH---hhCCCHHHHHHHHhCCCCC-CCHHHHHHHHHH
Q 009014 470 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKL-II---EKYSSMDEIMRECNSMAGH-LDVWKLLDDAHD 537 (546)
Q Consensus 470 g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~-IL---~~~~~fdeiL~~ln~L~~~-lDv~~lL~~A~~ 537 (546)
...+|.+...+++.+++ |. +...+..+|...+.++|.. .||+++++.|-.
T Consensus 362 ------------------~i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~ 416 (848)
T KOG2222|consen 362 ------------------GINIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGE 416 (848)
T ss_pred ------------------cchhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhh
Confidence 35566555556665443 32 2346778999999999875 689999988754
No 12
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.82 E-value=8.5e-20 Score=195.08 Aligned_cols=191 Identities=20% Similarity=0.278 Sum_probs=160.3
Q ss_pred HHHHHhhhhcCCCCccCCcchhhhh-----hhh---hccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhch
Q 009014 322 RIIRLDAVRANSEWTIYSPSQAAVS-----EMK---AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKAR 393 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~~~v~-----~~~---~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~ 393 (546)
+||++||+|+...-.+.+...+.-. +.| .....|.||+- .+.+|++ |. .+.+|.-||-|+..|+-++.
T Consensus 392 rqievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgld--sLa~PFl-~l-n~Nne~laF~~~~~fi~kyc 467 (725)
T KOG1093|consen 392 RQIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLD--SLAAPFL-YL-NFNNELLAFACIATFIPKYC 467 (725)
T ss_pred hhhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcceeecCCCh--hhhhhHH-HH-hcCchHHHHHHHHHHHHHHH
Confidence 7899999999863333322122111 111 23678999998 6899997 43 34589999999999999965
Q ss_pred h-CCCCCcH-HHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhcc
Q 009014 394 H-NFRLDEV-GIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGI 471 (546)
Q Consensus 394 ~-~F~~~~~-gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~ 471 (546)
+ +|..|.+ -++..|..+.+++..+||+|++||..+|..+.+|+.+||+|.|+.+||.+..+.|||.++..+.
T Consensus 468 q~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~------ 541 (725)
T KOG1093|consen 468 QHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS------ 541 (725)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC------
Confidence 5 4666444 4688999999999999999999999999999999999999999999999999999999999773
Q ss_pred ccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 009014 472 AKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVT 541 (546)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~ 541 (546)
.|++++++|++.+.|+.++. .+|.|++.+|.+++ ++|++.+++....|+..
T Consensus 542 ----------------SFplmi~vAil~~lR~~LLa--~nfne~illf~d~p-dldId~~Ires~~l~e~ 592 (725)
T KOG1093|consen 542 ----------------SFPLMIGVAILIQLRDPLLA--CNFNECILLFSDLP-DLDIDVCIRESYHLMET 592 (725)
T ss_pred ----------------ccHHHHHHHHHHHhhhhhhh--CCchhheeeeccCC-cccHHHHHHHHhhhhhC
Confidence 79999999999999999998 69999999999999 99999999999888754
No 13
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=187.95 Aligned_cols=183 Identities=16% Similarity=0.253 Sum_probs=149.8
Q ss_pred CChhhHHHHH---HHHHHhhhhcCCCCccCCcch--hhhhhh---h-----hccccccccCChhhhhhhHHHHhhcccch
Q 009014 312 YTDEDFATWQ---RIIRLDAVRANSEWTIYSPSQ--AAVSEM---K-----AQRSAQIVGLKDYDHLEPSRIYHAARLED 378 (546)
Q Consensus 312 ~~~e~l~~l~---~~I~~Dv~RT~p~~~~f~~~~--~~v~~~---~-----~~~igY~QGMnd~dllaP~L~y~~~~ldE 378 (546)
.+.+.++.|+ +.|.+|+-||||+|++|+... ++.+.. + +.++|||||++. ++.+|+.+ ++|
T Consensus 610 p~~~llkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~f---v~gvlllh---~~e 683 (948)
T KOG4436|consen 610 PYKELLKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSF---VAGVLLLH---MSE 683 (948)
T ss_pred ChHHHHHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchh---hhhhhHhh---cch
Confidence 3456677664 679999999999999997632 333322 2 238999999993 45554443 399
Q ss_pred HHHHHHHHHHHHh--chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHH
Q 009014 379 HEAFWCFAGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCL 456 (546)
Q Consensus 379 ~dAFWcF~~lM~~--~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRL 456 (546)
+.||=++..||-. ++..|.+|+..++.++++|..+++.+++.||+||++++|.|.+|+.+||++.|+..||..-|-|+
T Consensus 684 ~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarv 763 (948)
T KOG4436|consen 684 ENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARV 763 (948)
T ss_pred hhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHH
Confidence 9999999999986 77889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCC
Q 009014 457 WEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMA 523 (546)
Q Consensus 457 WD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~ 523 (546)
+|.+|..|. -++|-++..|+..++.+|.++-+|++|+.|+++..
T Consensus 764 fd~~flq~t-----------------------evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~ 807 (948)
T KOG4436|consen 764 FDLIFLQGT-----------------------EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTL 807 (948)
T ss_pred HHHHHhhcc-----------------------chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhh
Confidence 999999873 35666666677655555555789999999987653
No 14
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-15 Score=154.84 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=138.4
Q ss_pred ccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh-chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcC
Q 009014 351 QRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK-ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQ 429 (546)
Q Consensus 351 ~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~-~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~ 429 (546)
++..|-||..| ++..+++.+ .|.+|+-....+-.- ++++-.+.+.+..++|..+..+|+..+|+||+.|++-.
T Consensus 139 P~L~YYQGyHD--I~~tfLLv~----gE~~Al~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~ae 212 (395)
T KOG2595|consen 139 PTLNYYQGYHD--IVVTFLLVV----GELEALSLMEELSTLHLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAE 212 (395)
T ss_pred CCcchhcchhH--HHHHHHHhh----hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhc
Confidence 47789999995 577776554 588888766555543 44444566778899999999999999999999999987
Q ss_pred CCcccchHHHHHHhhcccC-ChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhh
Q 009014 430 AEDCFFVYRMVVVLFRREL-TFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEK 508 (546)
Q Consensus 430 i~~~~F~~rW~l~lF~Ref-p~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~ 508 (546)
+++ +|+..|++|+|+..+ ++..++|++|.|++... -+.+|++|++++.+|+.|++.
T Consensus 213 vgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~p----------------------l~piyv~A~vvL~r~~eIl~~ 269 (395)
T KOG2595|consen 213 VGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHP----------------------LLPIYVYAAVVLYRRSEILKC 269 (395)
T ss_pred ccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc----------------------chhHHHHHHHhhhhHHHHHHH
Confidence 754 799999999999998 68999999999999863 478999999999999999997
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 009014 509 YSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTL 542 (546)
Q Consensus 509 ~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~ 542 (546)
..++.-+..++..+|.++..++++..+..++.++
T Consensus 270 ~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~ 303 (395)
T KOG2595|consen 270 DCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRK 303 (395)
T ss_pred HhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcC
Confidence 7888889999999999999999999998877654
No 15
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.61 E-value=1.3e-15 Score=162.95 Aligned_cols=175 Identities=16% Similarity=0.261 Sum_probs=143.2
Q ss_pred HHHHHhhhhcCCCCccCCcch--hh-----hhh---hhhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh
Q 009014 322 RIIRLDAVRANSEWTIYSPSQ--AA-----VSE---MKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 391 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~--~~-----v~~---~~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~ 391 (546)
.|| +|+.||+|.+..|.... ++ +.. .....+||||||. -+.+|+++|+ .|++|||.++.+|..
T Consensus 187 ~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~--~~a~~ll~~~----~ee~af~~lv~l~~~ 259 (397)
T KOG1102|consen 187 EII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMS--SIAAPLLLYL----PEEEAFPLLVKLMKN 259 (397)
T ss_pred HHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchh--hHhhhhhccC----chhhhhhhhhhhhhc
Confidence 456 89999999999997611 11 111 1134899999999 4578888774 799999999999997
Q ss_pred c-hhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhc
Q 009014 392 A-RHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAG 470 (546)
Q Consensus 392 ~-~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g 470 (546)
. .+.|..+..|+...+..+..+++...|.++.|+.+.+++..+|+.+|++++|...||++.++|+||+++.++.
T Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~----- 334 (397)
T KOG1102|consen 260 YGLDLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGV----- 334 (397)
T ss_pred cchhcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhch-----
Confidence 4 4556778889999999999999999999999999999999999999999999999999999999999999983
Q ss_pred cccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCC-CCCCC
Q 009014 471 IAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSM-AGHLD 527 (546)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L-~~~lD 527 (546)
.....+..+++....+.+++ .+++.+++++.+- +...|
T Consensus 335 -----------------~i~~~~~~~l~~~~~~~~~~--~~~e~~~~~l~~~~~~~~~ 373 (397)
T KOG1102|consen 335 -----------------SILFRFSLALLKHKADDLLD--LDFESLLSYLRVDLPKSYD 373 (397)
T ss_pred -----------------HHHHHHHHHHhhhhhHHHhh--ccHHHHHHHHhcccHhhcC
Confidence 44555566666667788887 5799999999754 33343
No 16
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=157.35 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=134.4
Q ss_pred HHHhhhhcCCCCccCCcchhhhhh--------hhhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh-chh
Q 009014 324 IRLDAVRANSEWTIYSPSQAAVSE--------MKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK-ARH 394 (546)
Q Consensus 324 I~~Dv~RT~p~~~~f~~~~~~v~~--------~~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~-~~~ 394 (546)
|++|++|..|+|+-|....+--.. .+..+|||||-|| -+++-+++|+ .|++|||+++.+.++ +.+
T Consensus 247 IE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMN--IV~s~lll~~----~EEeafwll~~lce~~ip~ 320 (671)
T KOG4347|consen 247 IEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSNPEVGYCQAMN--IVGSELLLFC----KEEEAFWLLSKLCEIYIPD 320 (671)
T ss_pred ccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccCCchhHHHHHH--HHHHhhhhhh----ccchHHHHHHHHHHHhccc
Confidence 778999999999999753321111 1235899999999 4566666665 799999999999999 556
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccc
Q 009014 395 NFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKS 474 (546)
Q Consensus 395 ~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~ 474 (546)
+|.....|......++..|++...|.|++|+..++ ...+....||+++|-..+|++..+||-|+||.+|.
T Consensus 321 yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~--------- 390 (671)
T KOG4347|consen 321 YYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGP--------- 390 (671)
T ss_pred ccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhccc---------
Confidence 77777888888889999999999999999999999 77889999999999999999999999999999984
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Q 009014 475 AWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMREC 519 (546)
Q Consensus 475 ~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~l 519 (546)
..++-+++|++..+.+.|++ +.|-.++|..+
T Consensus 391 -------------rvlFqiaLail~~N~~~il~-~~dDge~~~vl 421 (671)
T KOG4347|consen 391 -------------RVLFQIALAILKQNAERILS-ATDDGEAMMVL 421 (671)
T ss_pred -------------HHHHHHHHHHHHhhHHHhcc-cCCchHHHHHH
Confidence 34444556666668899997 45555555544
No 17
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.38 E-value=3.5e-13 Score=147.29 Aligned_cols=342 Identities=23% Similarity=0.220 Sum_probs=191.9
Q ss_pred cCCCCCHHHHhhccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009014 94 RKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECR 173 (546)
Q Consensus 94 r~~pls~~~W~~~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw~ 173 (546)
+.+.++.++|......+|++... ...+..||.||+.+++|+++|||++++|+|++|..||..+... ..+|..+|.||.
T Consensus 144 ~~p~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~ 221 (488)
T KOG2197|consen 144 RSPSLTLEEYNSNAMREGRLDES-VHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWS 221 (488)
T ss_pred CCCcchhhhhhhhhhhccccccc-hhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhhe
Confidence 34449999999999999999976 4566699999999999999999999999999999999999999 999999999999
Q ss_pred HhhhhcccccccccccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccc
Q 009014 174 KIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERD 253 (546)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~~~ 253 (546)
...+.+.... ......++.|.+||.||||++. ++++.++|.
T Consensus 222 ~~~~~~~~~~---------------~~~~~~~~~i~~dv~rtDr~~~------------------------~~~~~~n~~ 262 (488)
T KOG2197|consen 222 STSPEQSPES---------------EGYLERKSRIEKDVGRTDRSLE------------------------FYEGEENPH 262 (488)
T ss_pred eccccccccc---------------cchhhhhhhhhhhccccchhhh------------------------hhhcccccC
Confidence 8776543111 0123345789999999999863 222222111
Q ss_pred ccccccccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhcCC
Q 009014 254 KSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANS 333 (546)
Q Consensus 254 t~~l~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT~p 333 (546)
...+.. ....|++.+.+.-.... ++...+.--.+... ..+-|.-..+.. |-.|++
T Consensus 263 ~~~l~~--------------------iL~ty~~~~~d~GY~Qg-mSDllspi~~v~~d-e~~aFwcFv~fm--~~~~~n- 317 (488)
T KOG2197|consen 263 LARLVD--------------------ILLTYAVYDFDLGYCQG-MSDLLSPILIVMED-EVEAFWCFVGFM--DRLRHN- 317 (488)
T ss_pred HHHHHH--------------------HHhhcccccCccccccC-chhhcCcceeeecC-chHHHHHHHHHH--HHHhhc-
Confidence 111100 00000000000000000 00000000000000 012232222222 222221
Q ss_pred CCccCCcchhhhhhhhhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhchhCCCCCcHHHHHHHHHHHHH
Q 009014 334 EWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKI 413 (546)
Q Consensus 334 ~~~~f~~~~~~v~~~~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~~~F~~~~~gm~~~l~~l~~L 413 (546)
|..++..+..+-.. +-....+..|.+..+.-.++-.+.|.||--++-.++.-|.... ...|-++
T Consensus 318 ----F~~d~~~~~~Ql~~------~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed------~l~LWEv 381 (488)
T KOG2197|consen 318 ----FRIDQSGMQTQLAQ------LSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFED------SLRLWEV 381 (488)
T ss_pred ----CccccccHHHHhhh------hhhhccccCHHHHhhccccCCCccceeeehhhccccccccccc------HHHHHHH
Confidence 22222222111111 1111134556554443345788899999888887776664432 1222223
Q ss_pred HHhhcHHHHHHHH-hcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccc--cccCCCCCCcHH
Q 009014 414 IKCKDNHLYRHLE-QLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGR--MRLRAPPTDDLL 490 (546)
Q Consensus 414 Lk~~dP~L~~HL~-~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~--~~~~~~~~~~~~ 490 (546)
+....|--+=|+. ..++-.. +.....++.+...|.. +....++.+...
T Consensus 382 lw~~~~~~~f~~~~~~~~l~~-----------------------------~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~ 432 (488)
T KOG2197|consen 382 LWTDLPSPHFHLYVAPAILNK-----------------------------DPQTLMEQGKSFNEVLKHVNLLSEKADVLW 432 (488)
T ss_pred HHhcCccchHHHHHHHhhhhc-----------------------------chHHHHhcCccchhHHhhcccccccchhhh
Confidence 3222222111111 0111000 1111111111111211 222234456778
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 009014 491 LYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHAKI 546 (546)
Q Consensus 491 lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~~~~i 546 (546)
++.+|..+......+++...+++++...++.+.+.+|....+..|+.|..+++.+|
T Consensus 433 ~~~~A~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 488 (488)
T KOG2197|consen 433 VLVRAEALERQNKQMEEPPEVMDEIESILQITAGPLDAGKLRIGADKLHRTFRMKI 488 (488)
T ss_pred HHHHHHHHHHHHHhccccccchhhhhhcccCCCCCCCcccccccccccccccccCC
Confidence 88888888888888888888999999999999999999999999999988888764
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=128.90 Aligned_cols=160 Identities=18% Similarity=0.284 Sum_probs=126.6
Q ss_pred hccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhch-hCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhc
Q 009014 350 AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKAR-HNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQL 428 (546)
Q Consensus 350 ~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~-~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~ 428 (546)
.+++.|.--+.=+.+|-|++.. .++-++.|-||.++|+++. ..-.++. .-+..|+-||+++||+|++||+..
T Consensus 105 ~Rn~~Y~~d~gWi~lL~pl~~L---~lprsd~fN~F~ai~~kYIPkdcrpkg----~~Fh~FRLLlqYHdPelc~~Ldtk 177 (669)
T KOG3636|consen 105 KRNMDYIKDIGWITLLEPLLLL---NLPRSDEFNVFFAITTKYIPKDCRPKG----QIFHLFRLLLQYHDPELCNHLDTK 177 (669)
T ss_pred ccCCcccccccHHHHHHHHHHh---cCCcchhhhhhHhhhhcccCCCCCCCC----ccchHHHHHHHhcCHHHhhhhhcc
Confidence 3455666666666788887643 3589999999999999843 3344432 356788899999999999999999
Q ss_pred CCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHH-HHHHHHh
Q 009014 429 QAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQ-RRKLIIE 507 (546)
Q Consensus 429 ~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~-~r~~IL~ 507 (546)
.+.|.+|+..||-.||+...+.+.+.-|||.++-..+ .|++|+.+.+++. -|++|++
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD----------------------PF~vffLaliiLiNake~ILq 235 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD----------------------PFLVFFLALIILINAKEEILQ 235 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC----------------------ceehHHHHHHHhcccHHHHhh
Confidence 9999999999999999999999999999999998763 6777767766666 5888887
Q ss_pred h-CCCHHHHHHHHhCCCCCC---CHHHHHHHHHHH
Q 009014 508 K-YSSMDEIMRECNSMAGHL---DVWKLLDDAHDL 538 (546)
Q Consensus 508 ~-~~~fdeiL~~ln~L~~~l---Dv~~lL~~A~~L 538 (546)
. ..+-+|++++|.++|..+ ||.++.+.|.-.
T Consensus 236 ~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY 270 (669)
T KOG3636|consen 236 VKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYY 270 (669)
T ss_pred hccccHHHHHHHHHcCchhcccccchhHHHHHHHH
Confidence 3 356789999999999766 566667666543
No 19
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.10 E-value=9.4e-12 Score=131.68 Aligned_cols=281 Identities=21% Similarity=0.282 Sum_probs=197.8
Q ss_pred cCCCCCHHHHhhccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009014 94 RKHALLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECR 173 (546)
Q Consensus 94 r~~pls~~~W~~~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw~ 173 (546)
....||..-|..+..+. -+.. -.++...++||.+...|+.+||++++-|...+...+-+.........|.+-.-.|.
T Consensus 527 a~~glt~~~W~qy~~d~-t~~e--~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~ 603 (813)
T KOG1648|consen 527 ASAGLTEKFWKQYRADP-TIEE--WRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF 603 (813)
T ss_pred ccccccHHHHHHHhcCC-chHH--HHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH
Confidence 56679999999998643 4432 46788999999999999999999999999999999988888889999988666665
Q ss_pred HhhhhcccccccccccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccc
Q 009014 174 KIIHRYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERD 253 (546)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~~~ 253 (546)
.-.- -.|.+||.|.||+. ..|-.| |+
T Consensus 604 ~~~~----------------------------~~~~kd~e~~~~~~-----------------------~~fs~~-~~-- 629 (813)
T KOG1648|consen 604 RANL----------------------------HRIDKDVERCDRNL-----------------------MFFSNK-DN-- 629 (813)
T ss_pred hhhe----------------------------eeecchhhhCcchh-----------------------eeecCC-cc--
Confidence 2100 13456776666542 111111 00
Q ss_pred ccccccccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhcCC
Q 009014 254 KSVLTCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANS 333 (546)
Q Consensus 254 t~~l~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT~p 333 (546)
++. ++
T Consensus 630 ---------------------------------------------------------------les-~~----------- 634 (813)
T KOG1648|consen 630 ---------------------------------------------------------------LES-RR----------- 634 (813)
T ss_pred ---------------------------------------------------------------hhh-he-----------
Confidence 110 00
Q ss_pred CCccCCcchhhhhhhhhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhchhCCCCCcHHHHHHHHHHHHH
Q 009014 334 EWTIYSPSQAAVSEMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKI 413 (546)
Q Consensus 334 ~~~~f~~~~~~v~~~~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~~~F~~~~~gm~~~l~~l~~L 413 (546)
.+|... -+.+..||.|||. |+++|.+.- +.||.-.-=||.-+|-+-++.|.. .+||.+.|-.++ +
T Consensus 635 --~~~~~~------~~~l~~~~~~~~~--dl~~p~~~~---~ed~~~~~e~~s~~~~~q~~~~~q-~~~~~~~l~~~r-~ 699 (813)
T KOG1648|consen 635 --VMYTYV------RRNLEEGYTQGMC--DLLAPLLVT---FEDEALTLECFSLLMLRQRGKFPQ-RPGMSKCLLNLR-L 699 (813)
T ss_pred --eeeeee------ccccccccccchh--hccCCcCCC---hhhcccccCCCcHHHHHhcccCCC-CCCccccccccc-c
Confidence 111100 1123569999999 579997632 346666666999999887777753 356777776666 8
Q ss_pred HHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHH
Q 009014 414 IKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYA 493 (546)
Q Consensus 414 Lk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi 493 (546)
++..+|-. .-++. ..-..||||+.-|+|+++.+....+|+++|++... --++.+.+|+
T Consensus 700 ~~v~~~l~-s~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~ 757 (813)
T KOG1648|consen 700 IQVVDPLI-SDIDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRL-----------------RITDDFAIFF 757 (813)
T ss_pred hhhhcchh-cchhh----hhhcceeeeccCcccccCCCCcceeeEeecccccc-----------------ccCcchhhhh
Confidence 88888822 22221 23455999999999999999999999999998631 1246788887
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhh
Q 009014 494 IAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLHA 544 (546)
Q Consensus 494 ~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~~~ 544 (546)
..+. -.+.+.++.+..+.+++++++|.+...-|-+.++.-|..-+..+++
T Consensus 758 g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~~~~~l~~ 807 (813)
T KOG1648|consen 758 GLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVKCLQN 807 (813)
T ss_pred hhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcchHHHHHH
Confidence 7665 4577777777788899999999998778888887777655555543
No 20
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.1e-10 Score=110.16 Aligned_cols=115 Identities=15% Similarity=0.217 Sum_probs=92.4
Q ss_pred HHHHHHHhhhhcCCCCccCCcchhhh-------hhhh---hccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHH
Q 009014 320 WQRIIRLDAVRANSEWTIYSPSQAAV-------SEMK---AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFM 389 (546)
Q Consensus 320 l~~~I~~Dv~RT~p~~~~f~~~~~~v-------~~~~---~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM 389 (546)
|..-|.+|++|-||.|.+|...+.+- ...+ ..+.||||+-.- .+.+++ +.+.+.||||||+.+.
T Consensus 142 t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qap---iaa~ll---mhmp~rdaf~~~vqic 215 (267)
T KOG2221|consen 142 TAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAP---IAAVLL---MHMPARDAFWCFVQIC 215 (267)
T ss_pred chhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhch---HHHHHH---hcccHHHHHHHHHHHH
Confidence 34568899999999999997643321 1111 248999999763 233332 2358999999999999
Q ss_pred Hh-chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHH
Q 009014 390 KK-ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMV 440 (546)
Q Consensus 390 ~~-~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~ 440 (546)
++ +..+|..+...++..-..|..|++..+|..|.||...++++.+|...||
T Consensus 216 ekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 216 EKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 98 5677888888899999999999999999999999999999999999996
No 21
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.61 E-value=5.8e-08 Score=108.48 Aligned_cols=169 Identities=11% Similarity=0.042 Sum_probs=132.9
Q ss_pred HHHHhhhhcCCCCccCCcchhh--------hh---------hhhhccccccccCChhhhhhhHHHHhhcccchHHHHHHH
Q 009014 323 IIRLDAVRANSEWTIYSPSQAA--------VS---------EMKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCF 385 (546)
Q Consensus 323 ~I~~Dv~RT~p~~~~f~~~~~~--------v~---------~~~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF 385 (546)
+|+.|+.||+|+|.+|...... +. ....+++|||||=+ ++++|+...++++.+|-.+
T Consensus 230 ~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~------~m~Gll~l~~~~E~assv~ 303 (948)
T KOG4436|consen 230 IIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSA------FMVGLLLLQMPVEEASSVK 303 (948)
T ss_pred HHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchH------HHHHHHHhcCcHHHHHHHH
Confidence 7999999999999999863221 11 11235899999943 4556654445899999999
Q ss_pred HHHHHh--chhCCCCCcHHHHHHHHHHHHHHHhhcH-HHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHh
Q 009014 386 AGFMKK--ARHNFRLDEVGIRRQLSIVSKIIKCKDN-HLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWA 462 (546)
Q Consensus 386 ~~lM~~--~~~~F~~~~~gm~~~l~~l~~LLk~~dP-~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a 462 (546)
+.+|.. ++..|.+.+.-+-..+.++....+...| .|+.|+.+.+.+..+++-.||++.|...||+...-|+-|++.+
T Consensus 304 ~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~ 383 (948)
T KOG4436|consen 304 VQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSS 383 (948)
T ss_pred HHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhcccccccccc
Confidence 999996 6678988888888899999999999999 9999999999999999999999999999999999999999998
Q ss_pred chhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHh
Q 009014 463 DQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECN 520 (546)
Q Consensus 463 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln 520 (546)
++. ...|.....++..+..+-....|++..+++++
T Consensus 384 egl-----------------------lk~fr~~ia~~~~~~d~~~~s~D~EG~~~~~q 418 (948)
T KOG4436|consen 384 EGL-----------------------LKRFRDSIAYLHQLRDIELESLDMEGMLSYFQ 418 (948)
T ss_pred ccH-----------------------HHHHhhhHHHHHHHhhhhhhccCccccccchh
Confidence 873 22333333333443333333489999999987
No 22
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.55 E-value=2.3e-08 Score=104.85 Aligned_cols=75 Identities=25% Similarity=0.509 Sum_probs=54.6
Q ss_pred hhHHHHHH---HHHHhhhhcCCCCccCCc-chhhhhhhh---------hccccccccCChhhhhhhHHHHhhcccchHHH
Q 009014 315 EDFATWQR---IIRLDAVRANSEWTIYSP-SQAAVSEMK---------AQRSAQIVGLKDYDHLEPSRIYHAARLEDHEA 381 (546)
Q Consensus 315 e~l~~l~~---~I~~Dv~RT~p~~~~f~~-~~~~v~~~~---------~~~igY~QGMnd~dllaP~L~y~~~~ldE~dA 381 (546)
++..-|++ .+++||.||.++++||.- +.+++-..+ ...+||.|||+ |+++|.|.-+ .+|.++
T Consensus 487 eh~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgms--dllapvlcev---qneset 561 (781)
T KOG2224|consen 487 EHIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMS--DLLAPVLCEV---QNESET 561 (781)
T ss_pred HHHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccch--hhcchhhhhh---ccccch
Confidence 34444544 268899999999999964 233322111 24789999999 6799987554 389999
Q ss_pred HHHHHHHHHhchh
Q 009014 382 FWCFAGFMKKARH 394 (546)
Q Consensus 382 FWcF~~lM~~~~~ 394 (546)
||||++||+.|.+
T Consensus 562 fwcfvglmqgmsd 574 (781)
T KOG2224|consen 562 FWCFVGLMQGMSD 574 (781)
T ss_pred hhhhhhhhccchh
Confidence 9999999987653
No 23
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.24 Score=50.92 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=96.8
Q ss_pred cccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhchhCC----CCCc--HHHHHHHHHHHHHHHhhcHHHHHHH
Q 009014 352 RSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNF----RLDE--VGIRRQLSIVSKIIKCKDNHLYRHL 425 (546)
Q Consensus 352 ~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~~~F----~~~~--~gm~~~l~~l~~LLk~~dP~L~~HL 425 (546)
+|.+|-.+- +.++-++-|. .||+++|=--+.++. .|= ..|+ -........+..|+..+-...++.+
T Consensus 127 disfcpalp--avvalllhys---ideaecfekacrila---cndpgrrlidqsflafesscmtfgdlvnkycqaahklm 198 (559)
T KOG2801|consen 127 DISFCPALP--AVVALLLHYS---IDEAECFEKACRILA---CNDPGRRLIDQSFLAFESSCMTFGDLVNKYCQAAHKLM 198 (559)
T ss_pred CcccCcchH--HHHHHHHHhc---ccHHHHHHHhheeee---ecCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 556666665 4455555452 389987755444432 110 0111 1223345566677776666666655
Q ss_pred HhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHH
Q 009014 426 EQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLI 505 (546)
Q Consensus 426 ~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~I 505 (546)
....-+.+...-.|-.-+| .|+|+----|++|+|+.+|+ -++|.++..+++.-.+.
T Consensus 199 vavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegy-----------------------kvlyrvalailkffhkv 254 (559)
T KOG2801|consen 199 VAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGY-----------------------KVLYRVALAILKFFHKV 254 (559)
T ss_pred hhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecch-----------------------HHHHHHHHHHHHHHHHh
Confidence 5443333344446655555 57999999999999999984 46776766666644333
Q ss_pred -----HhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009014 506 -----IEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLV 539 (546)
Q Consensus 506 -----L~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~ 539 (546)
+++.+--.+|-.+..++..+...+++|.+|..+-
T Consensus 255 ragqplesdsvkqdirtfvrdiaktvspekllekafair 293 (559)
T KOG2801|consen 255 RAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIR 293 (559)
T ss_pred hcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 2333334678888889998999999999987764
No 24
>PF14961 BROMI: Broad-minded protein
Probab=93.31 E-value=0.4 Score=57.59 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCC
Q 009014 406 QLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPP 485 (546)
Q Consensus 406 ~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~ 485 (546)
..+.++.||+.-.|.+|.-|...|..+...|.||+--+|=.-+++..+..--=.....|.
T Consensus 1166 ~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~-------------------- 1225 (1296)
T PF14961_consen 1166 SCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP-------------------- 1225 (1296)
T ss_pred HHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc--------------------
Confidence 468899999999999999999999999999999999999999999888776666666653
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHhh
Q 009014 486 TDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMA-GHLDVWKLLDDAHDLVVTLH 543 (546)
Q Consensus 486 ~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~-~~lDv~~lL~~A~~L~~~~~ 543 (546)
++.+|+|+|++...++.|++.. .-.++.-|++..+ ....+.+-+.--+.|=.+++
T Consensus 1226 --dyqvY~~VailkHlq~~ilq~~-q~q~L~~flke~~l~gF~~~~~~~yM~~Le~~yR 1281 (1296)
T PF14961_consen 1226 --DYQVYICVAILKHLQPEILQHT-QTQDLQVFLKEEALRGFRVSDYLEYMENLEQRYR 1281 (1296)
T ss_pred --cceeehhHHHHHHhhHHHHHhh-hhchHHHHhhhccccceeHHhHHHHHHHHHHHhH
Confidence 8899999999999999999853 3345666666544 34566666655555554443
No 25
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=76.81 E-value=2 Score=46.82 Aligned_cols=148 Identities=19% Similarity=0.244 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCceEEEeecccCCCCCCCCCCccccchhhhhhhHHHHHHHHhhhhhhhhhcccCCCCCCCCCccccc
Q 009014 15 VISLLMLIFTTGSGGKWIVFAEASGGGGGGGGGGFWYPAVLTTNVGLAIAVTAMAGLALAATVLYSHRGSLKSPWSRRRR 94 (546)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~r 94 (546)
..-+-+.||.-+-.|||++ ++|+|||||-..-.++...++.+++=+ .++.-+-++..-|--+..
T Consensus 153 ~~~~~r~h~~gdL~Gk~~l-----TaGLGGMgGAQplA~~ma~~v~i~vev-----------d~srI~~Rl~t~y~d~~a 216 (561)
T COG2987 153 FAEAGRQHFGGDLKGKWVL-----TAGLGGMGGAQPLAATMAGAVCIAVEV-----------DESRIDKRLRTGYLDEIA 216 (561)
T ss_pred HHHHHHHhcCCCccceEEE-----ecCCCcccccchHHHHhcCceEEEEEe-----------CHHHHHHHHhcchhhhhc
Confidence 3446678898888899987 568888888765444433333322211 000101111111111111
Q ss_pred CCCCCH----HHHhhccCC--CCcccchhHHHHHHhhcCCCCcchhh---hhhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 009014 95 KHALLP----KQWKTFFTP--DGKLSEGGVKFLKKVRSGGVDPSIRA---EVWPFLLGVYDLKSSKEERDSVKAEKRKEY 165 (546)
Q Consensus 95 ~~pls~----~~W~~~~d~--dGrl~~~~~~l~~~If~gGi~pslR~---eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY 165 (546)
..+=.. +++.....+ =|-+-+. .+++..++..|+.|++=. -+=--+.||+|..-|.+|+.+++.+.+++|
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNa-aei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr~~d~~~~ 295 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNA-AEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELREEDPDKY 295 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccH-HHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHHhhCHHHH
Confidence 111000 112111111 1223332 578888999999887543 344568899999999999999999999999
Q ss_pred HHH-----HHHHHHhhhhc
Q 009014 166 ENL-----RKECRKIIHRY 179 (546)
Q Consensus 166 ~~l-----k~qw~~~~~~~ 179 (546)
.++ +++-+.|..-|
T Consensus 296 ~~~a~~sm~~hv~Aml~~q 314 (561)
T COG2987 296 RKLARASMARHVEAMLAFQ 314 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 865 45666665533
No 26
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=76.09 E-value=11 Score=41.79 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCCcchhhh---hhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhc
Q 009014 118 VKFLKKVRSGGVDPSIRAE---VWPFLLGVYDLKSSKEERDSVKAEKRKEYENL-----RKECRKIIHRY 179 (546)
Q Consensus 118 ~~l~~~If~gGi~pslR~e---VW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~l-----k~qw~~~~~~~ 179 (546)
.++...+...||.|++=.+ +=--+-||||...|.+|+.+++++..++|.++ +++.+.|..-|
T Consensus 236 adv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~ 305 (545)
T TIGR01228 236 AEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQ 305 (545)
T ss_pred HHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677887765433 22235699999999999999999999999765 56777776654
No 27
>PRK05414 urocanate hydratase; Provisional
Probab=72.41 E-value=3.9 Score=45.44 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCCCcchhhhh---hhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhc
Q 009014 118 VKFLKKVRSGGVDPSIRAEV---WPFLLGVYDLKSSKEERDSVKAEKRKEYENL-----RKECRKIIHRY 179 (546)
Q Consensus 118 ~~l~~~If~gGi~pslR~eV---W~fLLGvy~~~sT~~ER~~~~~~kr~eY~~l-----k~qw~~~~~~~ 179 (546)
.++...+...||.|++=.+= =--+-||||...|.+|..+++++..++|.++ ++|.+.|..-+
T Consensus 245 adv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~ 314 (556)
T PRK05414 245 ADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPEEFVKAAKASMARHVEAMLAFQ 314 (556)
T ss_pred HHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778877654321 1112299999999999999999999998765 56777776644
No 28
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=41.13 E-value=26 Score=33.73 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=21.1
Q ss_pred ccchhhhhhhHHHHHHHHhhhhhhhhhcccCC
Q 009014 51 YPAVLTTNVGLAIAVTAMAGLALAATVLYSHR 82 (546)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 82 (546)
..+...+.+|++-|+.++.+.|.++|..|-+|
T Consensus 110 ~~~~~g~IaGIvsav~valvGAvsSyiaYqkK 141 (169)
T PF12301_consen 110 GEAEAGTIAGIVSAVVVALVGAVSSYIAYQKK 141 (169)
T ss_pred cCcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34446677888766666666666777766665
No 29
>PF14086 DUF4266: Domain of unknown function (DUF4266)
Probab=40.70 E-value=16 Score=28.23 Aligned_cols=15 Identities=53% Similarity=1.106 Sum_probs=11.3
Q ss_pred ecccCCCCCCCCCCc
Q 009014 35 AEASGGGGGGGGGGF 49 (546)
Q Consensus 35 ~~~~~~~~~~~~~~~ 49 (546)
=|+|+||++..||||
T Consensus 33 rE~a~gg~g~~GGGC 47 (50)
T PF14086_consen 33 REGASGGGGKAGGGC 47 (50)
T ss_pred cccccCCCCCCCcCC
Confidence 478877777777776
No 30
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=25.14 E-value=76 Score=34.00 Aligned_cols=19 Identities=53% Similarity=1.088 Sum_probs=15.1
Q ss_pred cCC-CCcchhhhhhhhhcCC
Q 009014 126 SGG-VDPSIRAEVWPFLLGV 144 (546)
Q Consensus 126 ~gG-i~pslR~eVW~fLLGv 144 (546)
-|| +..++|+.|||-|+|+
T Consensus 58 p~Glv~dslRk~vWp~L~~~ 77 (395)
T KOG2595|consen 58 PGGLVNDSLRKDVWPELLAL 77 (395)
T ss_pred CCccccHHHHHHHHHHHhcc
Confidence 344 4779999999999983
No 31
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.69 E-value=45 Score=33.65 Aligned_cols=22 Identities=32% Similarity=0.730 Sum_probs=19.1
Q ss_pred hcCCCCcchhhhhhhhhcCCCC
Q 009014 125 RSGGVDPSIRAEVWPFLLGVYD 146 (546)
Q Consensus 125 f~gGi~pslR~eVW~fLLGvy~ 146 (546)
.+-||+|++|..+|+||=|-+.
T Consensus 100 crkgippslr~Raw~ylsGa~~ 121 (267)
T KOG2221|consen 100 CRKGIPPSLRGRAWRYLSGAPS 121 (267)
T ss_pred hhcCCCcccchhHHHhhcCCCC
Confidence 4668999999999999999654
Done!