Query 009014
Match_columns 546
No_of_seqs 276 out of 1486
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 8.4E-46 2.9E-50 393.6 25.2 299 100-544 8-384 (396)
2 2qfz_A TBC1 domain family memb 100.0 1.2E-45 3.9E-50 385.0 23.8 282 98-544 24-338 (345)
3 2qq8_A TBC1 domain family memb 100.0 5.5E-44 1.9E-48 371.4 20.4 193 321-543 110-313 (334)
4 3qye_A TBC1 domain family memb 100.0 2.9E-43 9.8E-48 364.8 10.4 188 322-538 105-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.7E-40 5.9E-45 341.1 12.6 187 322-538 71-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 2.5E-39 8.5E-44 330.2 16.7 192 322-542 84-289 (292)
7 3qwl_A TBC1 domain family memb 100.0 4.8E-38 1.6E-42 321.5 25.7 157 355-543 131-287 (294)
8 3kev_A Galieria sulfuraria DCU 24.1 1.5E+02 0.0053 27.8 6.8 69 386-463 63-131 (199)
9 3tdu_A DCN1-like protein 1; E2 22.5 80 0.0027 29.8 4.5 68 388-464 63-130 (200)
10 4gba_A DCN1-like protein 3; E3 22.2 1E+02 0.0036 29.5 5.3 56 399-463 75-132 (221)
11 1r6x_A ATP:sulfate adenylyltra 20.3 48 0.0016 34.7 2.6 38 112-149 352-391 (395)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=8.4e-46 Score=393.59 Aligned_cols=299 Identities=18% Similarity=0.304 Sum_probs=232.1
Q ss_pred HHHHhhccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009014 100 PKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIHRY 179 (546)
Q Consensus 100 ~~~W~~~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw~~~~~~~ 179 (546)
.++|.++++.++.+. . +++|+.++ +||++++|++||++|||++|++++ +|+...++++.+|..++++|...
T Consensus 8 ~~kw~~lL~~~~~~d-~-~~Lr~l~~-~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~---- 78 (396)
T 1fkm_A 8 ISKFDNILKDKTIIN-Q-QDLRQISW-NGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSD---- 78 (396)
T ss_dssp HHHHHHHHSSCSBCC-H-HHHHHHHT-TCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSS----
T ss_pred HHHHHHHHcCCCCCC-H-HHHHHHHH-cCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhc----
Confidence 578999998765343 2 57777655 799999999999999999999865 78899999999999999876310
Q ss_pred ccccccccccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccc
Q 009014 180 EKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVLTC 259 (546)
Q Consensus 180 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~~~t~~l~~ 259 (546)
.+ +
T Consensus 79 -------------------------------------~~----------------------------~------------ 81 (396)
T 1fkm_A 79 -------------------------------------QH----------------------------S------------ 81 (396)
T ss_dssp -------------------------------------SC----------------------------S------------
T ss_pred -------------------------------------cC----------------------------c------------
Confidence 00 0
Q ss_pred ccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhcCCCCccCC
Q 009014 260 EDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTIYS 339 (546)
Q Consensus 260 ~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT~p~~~~f~ 339 (546)
.+ ....+||++||.||+|++.+|.
T Consensus 82 -------------------------------------------------------~~-~~~~~qI~~Dv~RT~p~~~~F~ 105 (396)
T 1fkm_A 82 -------------------------------------------------------RD-IPTWHQIEIDIPRTNPHIPLYQ 105 (396)
T ss_dssp -------------------------------------------------------TH-HHHHHHHHHHGGGSSTTSGGGG
T ss_pred -------------------------------------------------------cc-HHHHHHHHHHhhhhCCCccccc
Confidence 00 0123689999999999999997
Q ss_pred cchhhhhhh--------hhccccccccCChhhhhhhHHHHhhcc------------------cc-------hHHHHHHHH
Q 009014 340 PSQAAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAAR------------------LE-------DHEAFWCFA 386 (546)
Q Consensus 340 ~~~~~v~~~--------~~~~igY~QGMnd~dllaP~L~y~~~~------------------ld-------E~dAFWcF~ 386 (546)
....+.... ..+++||||||+ ++++|++..+... ++ |++|||||+
T Consensus 106 ~~~~~~~L~rIL~aya~~np~iGY~QGmn--~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~ 183 (396)
T 1fkm_A 106 FKSVQNSLQRILYLWAIRHPASGYVQGIN--DLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLT 183 (396)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTTCSCTTHH--HHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCCCcccCcH--HHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHH
Confidence 543322221 134899999999 5799987543210 12 999999999
Q ss_pred HHHHhchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhh
Q 009014 387 GFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAA 466 (546)
Q Consensus 387 ~lM~~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~ 466 (546)
+||++++++|..++.|++.++..+..||+..||+||+||+++++++.+|++|||+++|+|+||+++++||||++|++|..
T Consensus 184 ~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~ 263 (396)
T 1fkm_A 184 KLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQ 263 (396)
T ss_dssp HHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998810
Q ss_pred hh-----------hccccccccccccCC--------------------C----------CCCcHHHHHHHHHHHHHHHHH
Q 009014 467 IR-----------AGIAKSAWGRMRLRA--------------------P----------PTDDLLLYAIAACVLQRRKLI 505 (546)
Q Consensus 467 ~~-----------~g~~~~~~~~~~~~~--------------------~----------~~~~~~lfi~aAiLl~~r~~I 505 (546)
.. ++-...+-..+.... + +...+++|+|+|+|+.+|+.|
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~L 343 (396)
T 1fkm_A 264 EVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQL 343 (396)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHHHTHHHH
T ss_pred cccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000000000 0 113789999999999999999
Q ss_pred HhhCCCHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhhh
Q 009014 506 IEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDLVVTLHA 544 (546)
Q Consensus 506 L~~~~~fdeiL~~ln~L~~~----lDv~~lL~~A~~L~~~~~~ 544 (546)
|+ ++|++++++|++++.. .|++.+|..|..+...+++
T Consensus 344 l~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~ 384 (396)
T 1fkm_A 344 ME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKD 384 (396)
T ss_dssp TT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred Hh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhc
Confidence 97 7999999999999864 5999999999988887764
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.2e-45 Score=384.98 Aligned_cols=282 Identities=18% Similarity=0.337 Sum_probs=229.7
Q ss_pred CCHHHHhhccCCCCcccchhHHHHHHhhcCCCCcchhhhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009014 98 LLPKQWKTFFTPDGKLSEGGVKFLKKVRSGGVDPSIRAEVWPFLLGVYDLKSSKEERDSVKAEKRKEYENLRKECRKIIH 177 (546)
Q Consensus 98 ls~~~W~~~~d~dGrl~~~~~~l~~~If~gGi~pslR~eVW~fLLGvy~~~sT~~ER~~~~~~kr~eY~~lk~qw~~~~~ 177 (546)
-..++|.++++..+ .+. +++++.++ +||++++|++||++|||++|.+. ++|+...++++.+|..++++|.....
T Consensus 24 ~r~~kw~~~l~~~~--~d~-~~Lr~l~~-~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~ 97 (345)
T 2qfz_A 24 SRLDKFKQLLAGPN--TDL-EELRRLSW-SGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN 97 (345)
T ss_dssp CHHHHHHHHHHCSB--CCH-HHHHHHHT-TCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCC--CCH-HHHHHHHH-CCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34689999998542 333 57887765 78999999999999999999875 48889999999999999988742100
Q ss_pred hcccccccccccCCCCCCCCCCcccccCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccc
Q 009014 178 RYEKSSKLKETTGKSSNEDSGDLSQVFDSPGLEDEASSRRSVSSDGGSPVAEDLDHPVYDQSPECSGLLEGEDERDKSVL 257 (546)
Q Consensus 178 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~DV~rtdr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~dd~~~t~~l 257 (546)
+ + .
T Consensus 98 --------------------------------------~---------------------------------~---~--- 100 (345)
T 2qfz_A 98 --------------------------------------D---------------------------------E---V--- 100 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------c---------------------------------c---c---
Confidence 0 0 0
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccccccccccCCCCcccccccccCCCCCCCChhhHHHHHHHHHHhhhhcCCCCcc
Q 009014 258 TCEDASAGDTESTDSDSSEDLENIPLLSVEGAEARHENPKESSSLSKADGNSKFYTDEDFATWQRIIRLDAVRANSEWTI 337 (546)
Q Consensus 258 ~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~e~l~~l~~~I~~Dv~RT~p~~~~ 337 (546)
+ ....+||++||+||+|+ ++
T Consensus 101 ----------------------------------------------------------~-~~~~~~I~~Dv~RT~p~-~~ 120 (345)
T 2qfz_A 101 ----------------------------------------------------------H-QDTYRQIHIDIPRMSPE-AL 120 (345)
T ss_dssp ----------------------------------------------------------C-HHHHHHHHHHGGGCSCH-HH
T ss_pred ----------------------------------------------------------h-HHHHHHHHHhCcccCCc-cc
Confidence 0 01236899999999999 98
Q ss_pred CCcchhhhhhh--------hhccccccccCChhhhhhhHHHHhhc-cc--------------------chHHHHHHHHHH
Q 009014 338 YSPSQAAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAA-RL--------------------EDHEAFWCFAGF 388 (546)
Q Consensus 338 f~~~~~~v~~~--------~~~~igY~QGMnd~dllaP~L~y~~~-~l--------------------dE~dAFWcF~~l 388 (546)
|.....+.... ..+++||||||| ++++|++..+.. .+ +|++|||||++|
T Consensus 121 F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~--~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~l 198 (345)
T 2qfz_A 121 ILQPKVTEIFERILFIWAIRHPASGYVQGIN--DLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKL 198 (345)
T ss_dssp HTSHHHHHHHHHHHHHHHHHCTTTCCCTTHH--HHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHCCCCCcccChH--HHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 87533221111 235899999999 579998754321 11 399999999999
Q ss_pred HHhchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhh
Q 009014 389 MKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIR 468 (546)
Q Consensus 389 M~~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~ 468 (546)
|++++++|..+++|++..+..+..||+..+|+||+||+++++++.+|++|||+|+|+|+||+++++||||++|+++..
T Consensus 199 m~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~-- 276 (345)
T 2qfz_A 199 LDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDG-- 276 (345)
T ss_dssp HHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTT--
T ss_pred HHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999731
Q ss_pred hccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhhh
Q 009014 469 AGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGH----LDVWKLLDDAHDLVVTLHA 544 (546)
Q Consensus 469 ~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~----lDv~~lL~~A~~L~~~~~~ 544 (546)
...+++|+|+|+|+..|+.||+ +.+|++++++|++++.. .|++.+++.|..|..+++.
T Consensus 277 -----------------~~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~ 338 (345)
T 2qfz_A 277 -----------------FSHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFAD 338 (345)
T ss_dssp -----------------TTTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHHHh
Confidence 1248899999999999999997 48999999999999865 3799999999999988754
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-44 Score=371.39 Aligned_cols=193 Identities=12% Similarity=0.212 Sum_probs=169.7
Q ss_pred HHHHHHhhhhcCCCCccCCcchh-hhhhh--------hhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh
Q 009014 321 QRIIRLDAVRANSEWTIYSPSQA-AVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 391 (546)
Q Consensus 321 ~~~I~~Dv~RT~p~~~~f~~~~~-~v~~~--------~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~ 391 (546)
.+||++||+||+|++.+|..+.. ..... ..+++||||||| ++++|++.+ ++|++|||||++||++
T Consensus 110 ~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~--~iaa~lLl~----~~E~~aF~~~~~l~~~ 183 (334)
T 2qq8_A 110 LELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMS--FIAAVLILN----LDTADAFIAFSNLLNK 183 (334)
T ss_dssp HHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHH--HHHHHHHHH----SCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHH--HHHHHHHhc----CCHHHHHHHHHHHHHh
Confidence 36899999999999999975321 11111 235899999999 568888765 3899999999999998
Q ss_pred c--hhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhh
Q 009014 392 A--RHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 469 (546)
Q Consensus 392 ~--~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~ 469 (546)
+ ..+|..++++++..+..+..||+..+|+||+||++.|+++.+|+++||+++|+++||+++++||||++|++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~---- 259 (334)
T 2qq8_A 184 PCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE---- 259 (334)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH----
T ss_pred hhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC----
Confidence 5 4678889999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 009014 470 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTLH 543 (546)
Q Consensus 470 g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~~ 543 (546)
.+++++|+|+|..+++.|++ .++++++++|+++|..+|++.++..|..|..+.+
T Consensus 260 ------------------~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~~~ 313 (334)
T 2qq8_A 260 ------------------EFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQMQSR 313 (334)
T ss_dssp ------------------HHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCCCEET
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHccCcHH
Confidence 68899999999899999998 6999999999999999999999999998765443
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=2.9e-43 Score=364.75 Aligned_cols=188 Identities=16% Similarity=0.248 Sum_probs=163.8
Q ss_pred HHHHHhhhhcCCCCccCCcch--hhhhhh--------hhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh
Q 009014 322 RIIRLDAVRANSEWTIYSPSQ--AAVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 391 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~--~~v~~~--------~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~ 391 (546)
++|++||+||+|++.+|.... +..... ..+++||||||+ ++++|++.+ ++|++|||||++||++
T Consensus 105 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~--~i~a~ll~~----~~E~~aF~~l~~l~~~ 178 (331)
T 3qye_A 105 HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLS--FVAGILLLH----MSEEEAFKMLKFLMFD 178 (331)
T ss_dssp HHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHH--HHHHHHHTT----SCHHHHHHHHHHHHTT
T ss_pred hHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHH--HHHHHHHHH----hhHHHHHHHHHHHHHh
Confidence 689999999999999997642 211111 235899999999 568888755 3899999999999997
Q ss_pred --chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhh
Q 009014 392 --ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 469 (546)
Q Consensus 392 --~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~ 469 (546)
++++|.+++.|++.++..+..||+..+|+||+||+++++++.+|+++||+++|+++||++.++||||++|++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~---- 254 (331)
T 3qye_A 179 MGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT---- 254 (331)
T ss_dssp TCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT----
T ss_pred cCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc----
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCC---CHHHHHHHHHHH
Q 009014 470 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHL---DVWKLLDDAHDL 538 (546)
Q Consensus 470 g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~l---Dv~~lL~~A~~L 538 (546)
.+++|+|+|+|..+|+.|++ +.++++++++|++...++ |++.+++.|..+
T Consensus 255 ------------------~~l~~valaiL~~~~~~ll~-~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 255 ------------------EVIFKVALSLLGSHKPLILQ-HENLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp ------------------THHHHHHHHHHHHTHHHHHT-CCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 68999999999999999997 469999999999854445 788899988554
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=341.14 Aligned_cols=187 Identities=10% Similarity=0.189 Sum_probs=162.3
Q ss_pred HHHHHhhhhcCCCCccCCcchh--hhhhh--------hhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHh
Q 009014 322 RIIRLDAVRANSEWTIYSPSQA--AVSEM--------KAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKK 391 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~~--~v~~~--------~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~ 391 (546)
++|++||.||+|++.+|....+ ..... ..+++||||||+ ++++|++.++ +|++|||||+++|++
T Consensus 71 ~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~--~iaa~lL~~~----~e~~aF~~l~~l~~~ 144 (310)
T 3hzj_A 71 SVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQS--FLAAVLLLHM----PEEQAFCVLVKIMYD 144 (310)
T ss_dssp HHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHH--HHHHHHHHHS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHH--HHHHHHHHhC----CHHHHHHHHHHHHhc
Confidence 4788899999999998875421 11111 135899999999 5689987663 899999999999997
Q ss_pred --chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhchhhhhh
Q 009014 392 --ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRA 469 (546)
Q Consensus 392 --~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~ 469 (546)
++++|.++++|++..+..+..||+..+|+||+||+++|+++.+|+++||+|+|+++||++.++||||++|++|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~---- 220 (310)
T 3hzj_A 145 YGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL---- 220 (310)
T ss_dssp SCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT----
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc----
Confidence 78889888899999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHh-CCCC----CCCHHHHHHHHHHH
Q 009014 470 GIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECN-SMAG----HLDVWKLLDDAHDL 538 (546)
Q Consensus 470 g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln-~L~~----~lDv~~lL~~A~~L 538 (546)
.+++++|+|+|..+|+.|++ .++++++++|+ .++. ..|++.+++.|..+
T Consensus 221 ------------------~~l~~v~lail~~~~~~Ll~--~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 221 ------------------NIIFHVALALLKTSKEDLLQ--ADFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp ------------------THHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 68899999999999999998 59999999996 4553 35899999999776
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.5e-39 Score=330.20 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=165.9
Q ss_pred HHHHHhhhhcCCCCccCCcch--hhh--hh--------hhhccccccccCChhhhhhhHHHHhhcccchHHHHHHHHHHH
Q 009014 322 RIIRLDAVRANSEWTIYSPSQ--AAV--SE--------MKAQRSAQIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFM 389 (546)
Q Consensus 322 ~~I~~Dv~RT~p~~~~f~~~~--~~v--~~--------~~~~~igY~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM 389 (546)
+||++||.||+|+++.|.... +.. .. ....++||||||| ++++|++.++ +|++|||||+++|
T Consensus 84 ~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~--~iaa~lLl~~----~e~~aF~~l~~l~ 157 (292)
T 4hl4_A 84 QQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYH--DIVVTFLLVV----GERLATSLVEKLS 157 (292)
T ss_dssp HHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHH--HHHHHHHHHH----CHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHH--HHHHHHHHHc----CHHHHHHHHHHHH
Confidence 578899999999888775321 110 01 1235899999999 5699988553 8999999999999
Q ss_pred Hh-chhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCC-hhhHHHHHHHHHhchhhh
Q 009014 390 KK-ARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELT-FEQTLCLWEVIWADQAAI 467 (546)
Q Consensus 390 ~~-~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp-~~~vlRLWD~~~a~~~~~ 467 (546)
+. ++++|.+++.|++.++..+..+|+..||+||+||++.++ +.+||++||+|+|++++| +++++||||++|+++.
T Consensus 158 ~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~-- 234 (292)
T 4hl4_A 158 THHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP-- 234 (292)
T ss_dssp HTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT--
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC--
Confidence 97 667788888999999999999999999999999999999 569999999999999996 9999999999999983
Q ss_pred hhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 009014 468 RAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGHLDVWKLLDDAHDLVVTL 542 (546)
Q Consensus 468 ~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fdeiL~~ln~L~~~lDv~~lL~~A~~L~~~~ 542 (546)
.+++|+|+|+++.+|+.||+...++++++.+++++|..+|++.+++.|..|+.++
T Consensus 235 --------------------~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~ 289 (292)
T 4hl4_A 235 --------------------LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQF 289 (292)
T ss_dssp --------------------THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHS
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999855689999999999999999999999999999875
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=321.52 Aligned_cols=157 Identities=11% Similarity=0.143 Sum_probs=140.3
Q ss_pred ccccCChhhhhhhHHHHhhcccchHHHHHHHHHHHHhchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCccc
Q 009014 355 QIVGLKDYDHLEPSRIYHAARLEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCF 434 (546)
Q Consensus 355 Y~QGMnd~dllaP~L~y~~~~ldE~dAFWcF~~lM~~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~ 434 (546)
++|||. ++++|++.. ..+|+||||||++||++++++|.++++|+++++ ++||+.+||+|++||+++|+.+.+
T Consensus 131 ~~~~~~--~Iaa~ll~l---~~~E~dAFW~f~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~ 202 (294)
T 3qwl_A 131 DDEVFL--AIAKAMEEM---VEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKL 202 (294)
T ss_dssp HHHHHH--HHHHHHHHH---CCSHHHHHHHHHHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGS
T ss_pred chhhHH--HHHHHHHHH---hCCHHHHHHHHHHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchh
Confidence 348998 567887643 248999999999999999999999999998775 799999999999999999998877
Q ss_pred chHHHHHHhhcccCChhhHHHHHHHHHhchhhhhhccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHhhCCCHHH
Q 009014 435 FVYRMVVVLFRRELTFEQTLCLWEVIWADQAAIRAGIAKSAWGRMRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDE 514 (546)
Q Consensus 435 F~~rW~l~lF~Refp~~~vlRLWD~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~lfi~aAiLl~~r~~IL~~~~~fde 514 (546)
++.|||+|+|+|+||+++++||||++|+++ ..+++|+|+|+|..+|+.||+ ...+++
T Consensus 203 ~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~----------------------~~~l~~valAiL~~~r~~Ll~-~~~~~~ 259 (294)
T 3qwl_A 203 PYDLWFKRCFAGCLPESSLQRVWDKVVSGS----------------------CKILVFVAVEILLTFKIKVMA-LNSAEK 259 (294)
T ss_dssp CHHHHHTSTTTTTSCHHHHHHHHHHHHTTC----------------------STHHHHHHHHHHHHTHHHHHH-CCSHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhCC----------------------chHHHHHHHHHHHHHHHHHhC-CCCHHH
Confidence 777999999999999999999999999965 378999999999999999998 345599
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 009014 515 IMRECNSMAGHLDVWKLLDDAHDLVVTLH 543 (546)
Q Consensus 515 iL~~ln~L~~~lDv~~lL~~A~~L~~~~~ 543 (546)
|+++|+++| +.|++.++..|..|+.+..
T Consensus 260 il~~Lq~lp-~~di~~ll~~A~~l~~~~~ 287 (294)
T 3qwl_A 260 ITKFLENIP-QDSSDAIVSKAIDLWHKHC 287 (294)
T ss_dssp HHHHHTTCC-STTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-cccHHHHHHHHHHHHHHcC
Confidence 999999999 6799999999999998764
No 8
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=24.08 E-value=1.5e+02 Score=27.81 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=47.1
Q ss_pred HHHHHhchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhc
Q 009014 386 AGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWAD 463 (546)
Q Consensus 386 ~~lM~~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~ 463 (546)
..+++.+...=......|+..+..+..-| .+|..++.+- -|+|.+..--=.|.++++..+.+|+.+|..
T Consensus 63 ~ef~~G~~~l~~dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~re~gqk~L~~e~Ai~~W~lll~~ 131 (199)
T 3kev_A 63 KEFVEGLANLQVDSLEKLKRKLSSLRKEI--EDPSKFRAFY-------QFVFQYSKEPSQRSLPAETAMALWDVLLRG 131 (199)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSBCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCCCCHHHHHHHHHHHhCC
Confidence 34444444433445567777777776665 4776666554 478877665556789999999999999964
No 9
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=22.52 E-value=80 Score=29.82 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHHhchhCCCCCcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHHhhcccCChhhHHHHHHHHHhch
Q 009014 388 FMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWADQ 464 (546)
Q Consensus 388 lM~~~~~~F~~~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~lF~Refp~~~vlRLWD~~~a~~ 464 (546)
+++.+...=......|+..+..+..-|+ +|..++.+- -|+|.+..--=.|.++++..+.+|+.+|...
T Consensus 63 f~~G~~~l~~dsi~~lk~~l~~l~~~l~--d~~~Fk~~Y-------~ftF~~~r~~gqk~L~~e~Ai~~W~lll~~~ 130 (200)
T 3tdu_A 63 FMDGMTELGCDSIEKLKAQIPKMEQELK--EPGRFKDFY-------QFTFNFAKNPGQKGLDLEMAIAYWNLVLNGR 130 (200)
T ss_dssp HHHHHHHHTCSSHHHHHHTHHHHHHHTT--SHHHHHHHH-------HHHHHHHSCTTCSSEEHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHcc--CHHHHHHHH-------HHHHHHHcCcCcCcCCHHHHHHHHHHHcCCC
Confidence 3443333323345567777777766663 777666554 4788777665567889999999999999754
No 10
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=22.16 E-value=1e+02 Score=29.51 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHHHHHhhcHHHHHHHHhcCCCcccchHHHHHH--hhcccCChhhHHHHHHHHHhc
Q 009014 399 DEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVV--LFRRELTFEQTLCLWEVIWAD 463 (546)
Q Consensus 399 ~~~gm~~~l~~l~~LLk~~dP~L~~HL~~~~i~~~~F~~rW~l~--lF~Refp~~~vlRLWD~~~a~ 463 (546)
....|+..+..+..-| .+|..++.+- -|+|.+.+. -=.|.++++..+.+|..+|..
T Consensus 75 si~~lk~~l~~L~~~l--~d~~~Fk~~Y-------~ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~ 132 (221)
T 4gba_A 75 SIDGICARFPSLLTEA--KQEDKFKDLY-------RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQ 132 (221)
T ss_dssp SHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTTTCSSEEHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHhcCCccccCCCHHHHHHHHHHHcCC
Confidence 4456677776666655 5777666654 378777665 556789999999999999975
No 11
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=20.33 E-value=48 Score=34.68 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=28.9
Q ss_pred cccchhHHHHHHhhcCCCCcc--hhhhhhhhhcCCCCCCC
Q 009014 112 KLSEGGVKFLKKVRSGGVDPS--IRAEVWPFLLGVYDLKS 149 (546)
Q Consensus 112 rl~~~~~~l~~~If~gGi~ps--lR~eVW~fLLGvy~~~s 149 (546)
++..++.++|+.+..|-..|+ .|+|||+.|-.+||.-+
T Consensus 352 ~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~~~~~r~ 391 (395)
T 1r6x_A 352 TLNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPRP 391 (395)
T ss_dssp CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTTC-----
T ss_pred eEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHHhcCChh
Confidence 666667899999999988776 99999999999998643
Done!