Query 009016
Match_columns 546
No_of_seqs 235 out of 1799
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 19:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0720 Molecular chaperone (D 100.0 6.3E-44 1.4E-48 374.0 2.1 294 190-514 11-306 (490)
2 COG0484 DnaJ DnaJ-class molecu 99.8 2.3E-21 4.9E-26 202.2 7.7 82 438-521 2-99 (371)
3 KOG0713 Molecular chaperone (D 99.8 4.7E-20 1E-24 189.3 7.9 72 435-508 11-82 (336)
4 KOG0716 Molecular chaperone (D 99.7 1.1E-18 2.5E-23 174.9 4.5 66 440-507 31-96 (279)
5 PRK14288 chaperone protein Dna 99.7 5E-18 1.1E-22 176.9 7.5 66 440-507 3-68 (369)
6 PRK14296 chaperone protein Dna 99.7 1.3E-17 2.8E-22 174.0 7.3 66 439-507 3-68 (372)
7 PRK14279 chaperone protein Dna 99.7 2.2E-17 4.9E-22 173.3 7.4 67 439-507 8-74 (392)
8 PRK14286 chaperone protein Dna 99.7 3.5E-17 7.6E-22 170.7 7.7 67 439-507 3-69 (372)
9 PRK14282 chaperone protein Dna 99.7 9.5E-17 2.1E-21 167.1 7.6 67 439-507 3-70 (369)
10 PRK14277 chaperone protein Dna 99.7 9.6E-17 2.1E-21 168.1 7.6 68 438-507 3-70 (386)
11 PRK14285 chaperone protein Dna 99.7 1.4E-16 3E-21 165.9 7.4 66 440-507 3-68 (365)
12 PF00226 DnaJ: DnaJ domain; I 99.7 1.7E-16 3.6E-21 125.4 6.1 63 441-505 1-64 (64)
13 KOG0712 Molecular chaperone (D 99.6 1.7E-16 3.7E-21 164.1 7.4 64 439-507 3-66 (337)
14 PRK14294 chaperone protein Dna 99.6 1.9E-16 4.2E-21 164.7 7.8 67 439-507 3-69 (366)
15 PRK14295 chaperone protein Dna 99.6 1.8E-16 4E-21 166.4 7.5 65 440-506 9-73 (389)
16 PRK14287 chaperone protein Dna 99.6 2.1E-16 4.5E-21 165.0 7.7 66 439-507 3-68 (371)
17 KOG0691 Molecular chaperone (D 99.6 2.1E-16 4.6E-21 161.3 7.5 70 439-510 4-73 (296)
18 PRK14283 chaperone protein Dna 99.6 1.8E-16 4E-21 165.5 7.1 67 438-507 3-69 (378)
19 PRK14301 chaperone protein Dna 99.6 2.2E-16 4.8E-21 164.8 7.2 67 439-507 3-69 (373)
20 PRK14297 chaperone protein Dna 99.6 2.2E-16 4.8E-21 165.0 6.9 66 440-507 4-69 (380)
21 PRK14299 chaperone protein Dna 99.6 3E-16 6.5E-21 158.7 7.6 66 439-507 3-68 (291)
22 PRK10767 chaperone protein Dna 99.6 3.4E-16 7.5E-21 162.8 7.7 67 439-507 3-69 (371)
23 PRK14284 chaperone protein Dna 99.6 3.9E-16 8.5E-21 163.8 7.7 66 440-507 1-66 (391)
24 PRK14276 chaperone protein Dna 99.6 3.6E-16 7.8E-21 163.5 6.9 66 439-507 3-68 (380)
25 PRK14278 chaperone protein Dna 99.6 4.1E-16 8.8E-21 163.1 7.3 64 440-506 3-66 (378)
26 PRK14298 chaperone protein Dna 99.6 4.2E-16 9E-21 163.1 6.8 66 439-507 4-69 (377)
27 PRK14280 chaperone protein Dna 99.6 5.6E-16 1.2E-20 161.9 7.1 66 439-507 3-68 (376)
28 PRK14281 chaperone protein Dna 99.6 5.7E-16 1.2E-20 162.9 7.2 66 440-507 3-68 (397)
29 PTZ00037 DnaJ_C chaperone prot 99.6 4.8E-16 1E-20 165.1 6.4 62 440-507 28-89 (421)
30 PRK14291 chaperone protein Dna 99.6 6.1E-16 1.3E-20 161.9 7.1 65 440-507 3-67 (382)
31 PRK14289 chaperone protein Dna 99.6 9.8E-16 2.1E-20 160.3 7.6 67 439-507 4-70 (386)
32 PRK14290 chaperone protein Dna 99.6 2.2E-15 4.7E-20 156.8 6.9 65 440-506 3-68 (365)
33 KOG0717 Molecular chaperone (D 99.6 2.4E-15 5.2E-20 159.7 6.7 66 439-506 7-73 (508)
34 KOG0715 Molecular chaperone (D 99.6 3.3E-15 7.2E-20 151.9 7.5 68 440-510 43-110 (288)
35 TIGR02349 DnaJ_bact chaperone 99.6 3.2E-15 6.8E-20 154.5 6.8 63 441-506 1-63 (354)
36 PRK10266 curved DNA-binding pr 99.6 3.8E-15 8.1E-20 151.6 6.9 66 439-507 3-68 (306)
37 PRK14292 chaperone protein Dna 99.6 4.9E-15 1.1E-19 154.2 7.1 65 440-507 2-66 (371)
38 PRK14300 chaperone protein Dna 99.5 4.4E-15 9.5E-20 155.0 6.5 64 440-506 3-66 (372)
39 PRK14293 chaperone protein Dna 99.5 8.6E-15 1.9E-19 152.8 7.0 65 440-507 3-67 (374)
40 smart00271 DnaJ DnaJ molecular 99.5 1.4E-14 3.1E-19 112.4 6.3 58 440-499 1-59 (60)
41 COG2214 CbpA DnaJ-class molecu 99.5 1.5E-14 3.2E-19 132.0 6.9 67 439-507 5-72 (237)
42 KOG0718 Molecular chaperone (D 99.5 2.6E-14 5.6E-19 152.1 8.1 65 440-506 9-76 (546)
43 cd06257 DnaJ DnaJ domain or J- 99.5 4.1E-14 9E-19 107.8 6.5 55 441-497 1-55 (55)
44 PTZ00341 Ring-infected erythro 99.5 4.3E-14 9.4E-19 160.6 7.6 67 438-507 571-637 (1136)
45 PRK05014 hscB co-chaperone Hsc 99.4 1.5E-13 3.3E-18 130.3 7.5 72 440-511 1-77 (171)
46 KOG0719 Molecular chaperone (D 99.4 7.6E-14 1.6E-18 138.4 5.6 69 437-507 11-81 (264)
47 PRK01356 hscB co-chaperone Hsc 99.4 2.3E-13 5E-18 128.7 7.5 71 440-510 2-75 (166)
48 PRK00294 hscB co-chaperone Hsc 99.4 2.8E-13 6.1E-18 129.1 8.0 75 438-512 2-81 (173)
49 PRK03578 hscB co-chaperone Hsc 99.4 3.9E-13 8.4E-18 128.3 7.6 72 440-511 6-82 (176)
50 KOG0721 Molecular chaperone (D 99.4 6.3E-13 1.4E-17 130.6 7.5 70 437-508 96-165 (230)
51 TIGR03835 termin_org_DnaJ term 99.4 7.7E-13 1.7E-17 147.9 9.1 66 440-508 2-67 (871)
52 PHA03102 Small T antigen; Revi 99.4 2.5E-13 5.5E-18 127.5 3.2 62 440-507 5-68 (153)
53 KOG0722 Molecular chaperone (D 99.2 4.2E-12 9.2E-17 127.6 4.6 72 440-514 33-104 (329)
54 KOG0624 dsRNA-activated protei 99.2 1.4E-11 3E-16 128.7 5.9 70 436-507 390-462 (504)
55 KOG0714 Molecular chaperone (D 99.1 2.9E-11 6.4E-16 116.1 4.3 69 439-509 2-71 (306)
56 KOG1150 Predicted molecular ch 99.1 9.9E-11 2.1E-15 114.5 7.7 91 416-508 23-120 (250)
57 PRK01773 hscB co-chaperone Hsc 99.1 2.3E-10 5E-15 109.3 8.1 71 439-509 1-76 (173)
58 KOG0550 Molecular chaperone (D 99.0 1.9E-10 4.1E-15 122.1 5.4 71 435-507 368-439 (486)
59 PRK09430 djlA Dna-J like membr 99.0 3.1E-10 6.7E-15 114.5 5.5 56 440-497 200-262 (267)
60 PTZ00100 DnaJ chaperone protei 99.0 2.6E-10 5.6E-15 103.1 4.4 51 440-496 65-115 (116)
61 PHA02624 large T antigen; Prov 99.0 6.4E-10 1.4E-14 123.2 5.8 59 440-504 11-71 (647)
62 TIGR00714 hscB Fe-S protein as 98.9 2E-09 4.2E-14 101.2 7.0 59 453-511 2-65 (157)
63 COG5407 SEC63 Preprotein trans 98.7 8.8E-09 1.9E-13 110.3 5.1 68 438-507 96-168 (610)
64 COG5269 ZUO1 Ribosome-associat 98.7 4.9E-09 1.1E-13 106.6 2.8 71 437-507 40-113 (379)
65 KOG1789 Endocytosis protein RM 98.1 3.3E-06 7.2E-11 97.6 5.0 54 440-496 1281-1336(2235)
66 KOG3192 Mitochondrial J-type c 97.5 9.2E-05 2E-09 70.7 4.0 73 438-510 6-83 (168)
67 KOG0568 Molecular chaperone (D 97.5 0.00011 2.3E-09 74.3 4.3 55 440-497 47-102 (342)
68 KOG0723 Molecular chaperone (D 96.8 0.0022 4.9E-08 58.0 5.2 52 441-498 57-108 (112)
69 COG1076 DjlA DnaJ-domain-conta 96.3 0.0021 4.6E-08 61.3 2.4 69 441-509 2-75 (174)
70 KOG0431 Auxilin-like protein a 95.4 0.015 3.4E-07 63.6 4.3 43 453-495 399-448 (453)
71 COG1076 DjlA DnaJ-domain-conta 95.2 0.015 3.4E-07 55.5 3.1 54 440-495 113-173 (174)
72 PF09605 Trep_Strep: Hypotheti 88.1 8.5 0.00018 37.5 12.0 64 288-351 60-127 (186)
73 PF05297 Herpes_LMP1: Herpesvi 87.6 0.17 3.6E-06 53.2 0.0 49 259-309 78-139 (381)
74 PRK10263 DNA translocase FtsK; 85.0 9.7 0.00021 47.3 12.7 11 306-316 170-180 (1355)
75 PRK10263 DNA translocase FtsK; 84.3 6.8 0.00015 48.6 11.0 10 297-306 152-161 (1355)
76 PF03656 Pam16: Pam16; InterP 84.1 1.9 4.1E-05 40.3 5.0 51 441-497 59-109 (127)
77 PF11808 DUF3329: Domain of un 80.9 4.7 0.0001 35.0 6.0 31 268-298 11-41 (90)
78 COG1480 Predicted membrane-ass 80.1 32 0.00069 40.3 13.7 49 268-316 336-387 (700)
79 PF03208 PRA1: PRA1 family pro 78.3 21 0.00045 33.0 9.8 36 290-326 100-135 (153)
80 PF04156 IncA: IncA protein; 77.0 11 0.00025 35.8 7.9 9 310-318 49-57 (191)
81 KOG0724 Zuotin and related mol 75.5 2.9 6.3E-05 43.4 3.7 54 454-507 4-61 (335)
82 PRK11598 putative metal depend 75.1 19 0.00041 40.8 10.2 39 247-285 51-93 (545)
83 PF05207 zf-CSL: CSL zinc fing 72.3 2.4 5.2E-05 34.0 1.7 16 524-539 11-26 (55)
84 TIGR02185 Trep_Strep conserved 72.3 52 0.0011 32.2 11.2 59 289-347 63-126 (189)
85 PRK11644 sensory histidine kin 72.0 77 0.0017 35.0 13.7 20 282-303 139-158 (495)
86 cd06181 BI-1-like BAX inhibito 71.3 1E+02 0.0022 29.9 15.5 39 225-263 51-90 (212)
87 PF12805 FUSC-like: FUSC-like 71.1 16 0.00035 37.2 7.8 18 479-496 239-256 (284)
88 TIGR00947 2A73 probable bicarb 69.8 1.2E+02 0.0026 33.0 14.4 23 330-352 205-227 (425)
89 COG4709 Predicted membrane pro 69.1 66 0.0014 32.4 11.1 23 238-260 82-104 (195)
90 PF03208 PRA1: PRA1 family pro 68.3 17 0.00037 33.5 6.7 56 286-341 58-114 (153)
91 KOG4800 Neuronal membrane glyc 66.9 23 0.0005 36.4 7.7 91 248-371 57-156 (248)
92 PF10011 DUF2254: Predicted me 65.0 2E+02 0.0044 30.9 16.4 132 216-350 11-149 (371)
93 COG1295 Rbn Ribonuclease BN fa 62.9 1E+02 0.0022 32.2 11.8 80 239-322 186-283 (303)
94 PF14687 DUF4460: Domain of un 61.8 16 0.00034 33.4 5.0 46 453-498 5-54 (112)
95 PRK09598 lipid A phosphoethano 61.7 70 0.0015 36.2 11.0 13 500-512 402-414 (522)
96 PF07698 7TM-7TMR_HD: 7TM rece 58.3 1.7E+02 0.0037 27.8 16.8 71 265-335 62-136 (194)
97 PF10947 DUF2628: Protein of u 56.1 86 0.0019 27.5 8.5 19 246-264 41-59 (108)
98 TIGR02755 TraX_Ftype type-F co 55.6 2.1E+02 0.0045 29.4 12.1 43 303-356 129-172 (224)
99 KOG0828 Predicted E3 ubiquitin 55.1 2.6E+02 0.0057 32.2 13.7 184 138-335 267-494 (636)
100 PF08507 COPI_assoc: COPI asso 54.7 1.8E+02 0.0038 26.8 12.7 67 248-317 33-99 (136)
101 PF13446 RPT: A repeated domai 54.2 20 0.00044 28.6 3.9 27 440-468 5-31 (62)
102 PRK13706 conjugal transfer pil 54.0 2.8E+02 0.0061 29.0 14.0 102 214-322 58-172 (248)
103 TIGR00844 c_cpa1 na(+)/h(+) an 52.8 1.5E+02 0.0033 35.6 12.2 9 341-349 361-369 (810)
104 PF13994 PgaD: PgaD-like prote 52.6 56 0.0012 30.4 7.1 21 243-263 14-34 (138)
105 PLN02922 prenyltransferase 51.8 45 0.00097 35.2 7.1 67 230-304 73-140 (315)
106 PF12036 DUF3522: Protein of u 51.2 73 0.0016 31.2 8.0 23 282-304 115-137 (186)
107 PRK10862 SoxR reducing system 49.1 67 0.0015 30.6 7.2 15 261-275 75-89 (154)
108 PF07857 DUF1632: CEO family ( 48.0 40 0.00087 34.9 5.9 80 206-306 23-102 (254)
109 PF11026 DUF2721: Protein of u 47.8 92 0.002 28.8 7.7 28 251-278 61-88 (130)
110 PF03839 Sec62: Translocation 47.8 30 0.00064 35.3 4.8 30 271-304 142-171 (224)
111 PF13903 Claudin_2: PMP-22/EMP 47.3 1.7E+02 0.0037 26.4 9.3 17 337-353 148-164 (172)
112 PF14800 DUF4481: Domain of un 47.2 32 0.00069 36.7 5.1 17 248-264 72-88 (308)
113 KOG2927 Membrane component of 47.2 39 0.00085 36.8 5.8 56 249-309 198-259 (372)
114 PF07787 DUF1625: Protein of u 46.1 41 0.00089 33.9 5.6 16 210-225 179-194 (248)
115 PF13886 DUF4203: Domain of un 45.6 3E+02 0.0065 26.9 13.9 56 306-363 114-169 (210)
116 PHA03239 envelope glycoprotein 45.6 82 0.0018 35.2 8.1 72 246-317 254-340 (429)
117 PF11833 DUF3353: Protein of u 45.5 39 0.00084 33.6 5.2 36 453-496 3-38 (194)
118 PF12084 DUF3561: Protein of u 45.2 1E+02 0.0022 28.5 7.2 54 242-304 44-107 (107)
119 PRK10726 hypothetical protein; 45.0 1.1E+02 0.0023 28.2 7.3 62 242-304 41-104 (105)
120 PRK10245 adrA diguanylate cycl 45.0 1.1E+02 0.0025 32.4 8.9 15 288-302 141-155 (366)
121 TIGR00751 menA 1,4-dihydroxy-2 44.9 64 0.0014 33.5 6.9 17 288-304 110-126 (284)
122 PRK02983 lysS lysyl-tRNA synth 44.5 3.6E+02 0.0077 33.6 13.9 52 210-262 11-67 (1094)
123 PF11023 DUF2614: Protein of u 43.5 34 0.00074 31.8 4.0 46 286-350 13-63 (114)
124 PRK10490 sensor protein KdpD; 43.4 84 0.0018 37.5 8.4 35 265-304 429-463 (895)
125 KOG4453 Predicted ER membrane 43.3 4E+02 0.0087 28.0 11.9 58 155-215 62-119 (269)
126 TIGR02235 menA_cyano-plnt 1,4- 43.3 71 0.0015 33.2 6.9 18 287-304 106-123 (285)
127 PF01098 FTSW_RODA_SPOVE: Cell 42.8 1.5E+02 0.0032 31.3 9.3 33 216-248 68-101 (358)
128 PRK07419 1,4-dihydroxy-2-napht 42.5 80 0.0017 33.3 7.2 18 287-304 119-136 (304)
129 PF05297 Herpes_LMP1: Herpesvi 42.2 8.4 0.00018 41.0 0.0 42 327-368 144-187 (381)
130 PRK09546 zntB zinc transporter 41.1 22 0.00048 36.9 2.9 31 287-317 276-312 (324)
131 PRK13857 type IV secretion sys 40.9 1.2E+02 0.0025 28.6 7.0 43 277-319 61-104 (120)
132 PRK11383 hypothetical protein; 40.8 3E+02 0.0064 26.8 9.9 89 246-340 9-118 (145)
133 COG2194 Predicted membrane-ass 40.5 5E+02 0.011 30.0 13.5 49 242-291 47-95 (555)
134 PF09726 Macoilin: Transmembra 40.3 2.7E+02 0.0058 33.0 11.6 94 250-343 33-140 (697)
135 PRK12585 putative monovalent c 39.4 1.3E+02 0.0028 30.5 7.6 14 255-268 16-29 (197)
136 PF07672 MFS_Mycoplasma: Mycop 39.2 1.7E+02 0.0037 30.8 8.9 42 277-318 204-265 (267)
137 TIGR01652 ATPase-Plipid phosph 38.9 7E+02 0.015 30.6 15.2 17 111-127 775-791 (1057)
138 PF11239 DUF3040: Protein of u 38.7 78 0.0017 26.9 5.3 27 276-302 51-77 (82)
139 KOG3882 Tetraspanin family int 38.1 1.5E+02 0.0032 29.2 7.9 25 266-290 52-76 (237)
140 PF08449 UAA: UAA transporter 37.7 4.6E+02 0.01 26.8 11.9 48 256-303 229-276 (303)
141 PRK11281 hypothetical protein; 37.4 5.3E+02 0.011 32.4 13.8 39 221-260 557-595 (1113)
142 PF03348 Serinc: Serine incorp 37.4 1.7E+02 0.0036 32.5 8.9 47 232-278 64-125 (429)
143 COG5547 Small integral membran 36.7 62 0.0013 27.1 4.1 18 300-317 23-40 (62)
144 PF10337 DUF2422: Protein of u 36.2 5.6E+02 0.012 28.1 12.7 79 190-270 16-94 (459)
145 PF14362 DUF4407: Domain of un 36.2 77 0.0017 32.6 5.9 20 455-474 154-173 (301)
146 PF14362 DUF4407: Domain of un 35.9 2.1E+02 0.0046 29.4 9.0 25 205-230 5-29 (301)
147 KOG1287 Amino acid transporter 35.9 4.1E+02 0.0088 30.3 11.6 96 222-318 45-181 (479)
148 TIGR00914 2A0601 heavy metal e 35.8 84 0.0018 38.2 6.9 47 244-290 886-933 (1051)
149 TIGR01654 bact_immun_7tm bacte 35.8 6.3E+02 0.014 29.4 13.6 75 210-286 166-241 (679)
150 KOG4112 Signal peptidase subun 35.3 68 0.0015 29.2 4.5 24 269-292 28-51 (101)
151 TIGR01667 YCCS_YHJK integral m 35.1 3E+02 0.0065 32.4 10.9 17 323-339 474-490 (701)
152 TIGR01666 YCCS hypothetical me 35.0 1.2E+02 0.0026 35.7 7.7 35 286-320 109-143 (704)
153 PF01544 CorA: CorA-like Mg2+ 35.0 14 0.0003 36.4 0.3 33 286-318 245-285 (292)
154 TIGR02210 rodA_shape rod shape 34.9 5.9E+02 0.013 27.2 12.5 29 220-248 66-94 (352)
155 PF03878 YIF1: YIF1; InterPro 34.4 4.3E+02 0.0094 27.3 10.8 65 232-298 101-171 (240)
156 COG4317 Uncharacterized protei 34.1 62 0.0013 28.8 4.0 31 269-299 4-41 (93)
157 PF07331 TctB: Tripartite tric 34.0 2.6E+02 0.0055 25.1 8.2 29 289-317 77-105 (141)
158 KOG2923 Uncharacterized conser 34.0 21 0.00046 30.2 1.1 17 523-539 14-30 (67)
159 PF07264 EI24: Etoposide-induc 33.8 2.4E+02 0.0052 27.0 8.5 13 246-258 15-27 (219)
160 PF02673 BacA: Bacitracin resi 33.7 2.7E+02 0.0059 28.8 9.3 25 210-234 37-61 (259)
161 PRK10160 taurine transporter s 33.6 5.4E+02 0.012 26.3 12.3 7 204-210 13-19 (275)
162 PRK04214 rbn ribonuclease BN/u 33.4 6.7E+02 0.014 27.3 13.5 17 297-317 251-267 (412)
163 PRK01637 hypothetical protein; 33.3 3.2E+02 0.007 28.0 9.8 17 297-317 244-260 (286)
164 COG5265 ATM1 ABC-type transpor 33.3 1.5E+02 0.0033 33.5 7.8 84 218-311 21-104 (497)
165 PF11286 DUF3087: Protein of u 33.2 69 0.0015 31.5 4.6 47 281-341 27-83 (165)
166 PRK10794 cell wall shape-deter 33.1 6.5E+02 0.014 27.2 12.4 30 219-248 80-109 (370)
167 COG1289 Predicted membrane pro 33.1 1.6E+02 0.0035 33.9 8.3 57 285-341 406-467 (674)
168 PRK11909 cobalt transport prot 33.0 1.1E+02 0.0024 31.1 6.2 18 272-289 67-84 (230)
169 PF06570 DUF1129: Protein of u 32.9 2E+02 0.0044 28.2 8.0 16 229-244 90-105 (206)
170 PF07947 YhhN: YhhN-like prote 32.5 4.4E+02 0.0095 25.0 12.4 32 291-322 109-148 (185)
171 PRK13387 1,4-dihydroxy-2-napht 32.4 1.3E+02 0.0029 31.6 7.0 19 287-305 114-132 (317)
172 TIGR01299 synapt_SV2 synaptic 32.0 6.8E+02 0.015 29.8 13.2 116 200-322 617-732 (742)
173 COG4062 MtrB Tetrahydromethano 32.0 45 0.00097 30.6 2.9 21 279-299 78-98 (108)
174 PRK14397 membrane protein; Pro 31.9 5.2E+02 0.011 26.6 10.8 10 364-373 181-190 (222)
175 TIGR00383 corA magnesium Mg(2+ 31.8 31 0.00067 35.3 2.2 33 286-318 269-307 (318)
176 PRK12887 ubiA tocopherol phyty 31.4 1.6E+02 0.0035 30.9 7.4 18 287-304 120-137 (308)
177 PF10112 Halogen_Hydrol: 5-bro 31.2 1.7E+02 0.0036 28.5 7.0 19 455-475 137-155 (199)
178 TIGR00844 c_cpa1 na(+)/h(+) an 30.9 4.2E+02 0.0092 32.1 11.3 13 274-286 213-225 (810)
179 PRK09459 pspG phage shock prot 30.3 3.5E+02 0.0075 23.7 7.8 30 272-305 34-63 (76)
180 PRK12392 bacteriochlorophyll c 30.3 96 0.0021 33.1 5.5 17 288-304 126-142 (331)
181 PRK09776 putative diguanylate 30.1 3.3E+02 0.0071 32.3 10.3 9 442-450 439-447 (1092)
182 PF08019 DUF1705: Domain of un 29.9 4E+02 0.0086 25.0 9.0 13 290-302 73-85 (156)
183 PRK06080 1,4-dihydroxy-2-napht 29.8 2.9E+02 0.0064 28.1 8.8 18 288-305 114-131 (293)
184 COG1480 Predicted membrane-ass 29.7 8.4E+02 0.018 29.2 13.1 12 463-474 592-603 (700)
185 PRK11560 phosphoethanolamine t 29.3 1.3E+02 0.0028 34.4 6.7 43 247-289 49-97 (558)
186 TIGR00869 sec62 protein transl 29.0 1.1E+02 0.0024 31.6 5.5 26 283-308 158-185 (232)
187 PLN00012 chlorophyll synthetas 28.8 3.3E+02 0.0071 29.7 9.3 75 266-340 171-266 (375)
188 KOG3618 Adenylyl cyclase [Gene 28.5 7.5E+02 0.016 30.5 12.4 130 205-356 70-201 (1318)
189 TIGR01473 cyoE_ctaB protoheme 28.0 4.6E+02 0.01 26.7 9.8 21 222-242 46-66 (280)
190 PF07857 DUF1632: CEO family ( 28.0 2.5E+02 0.0054 29.2 7.9 16 353-368 107-122 (254)
191 PF06738 DUF1212: Protein of u 27.6 5.2E+02 0.011 24.5 9.6 7 230-236 125-131 (193)
192 PF04956 TrbC: TrbC/VIRB2 fami 27.4 1.8E+02 0.004 24.8 5.9 28 279-306 46-74 (99)
193 COG0628 yhhT Predicted permeas 27.3 3.7E+02 0.0081 28.1 9.2 44 330-373 304-347 (355)
194 PF03176 MMPL: MMPL family; I 27.2 2.7E+02 0.0058 28.6 8.0 12 250-261 157-168 (333)
195 KOG2592 Tumor differentially e 27.2 1.2E+02 0.0027 33.7 5.7 53 232-284 68-133 (426)
196 PF02535 Zip: ZIP Zinc transpo 27.1 6.6E+02 0.014 25.3 10.8 66 225-291 207-278 (317)
197 PRK11234 nfrB bacteriophage N4 27.1 1.5E+02 0.0032 35.1 6.8 19 334-353 414-432 (727)
198 PF06341 DUF1056: Protein of u 26.9 3.3E+02 0.0071 23.1 6.9 43 249-298 6-48 (63)
199 PHA03237 envelope glycoprotein 26.6 2.4E+02 0.0051 31.7 7.8 57 246-302 248-304 (424)
200 TIGR00776 RhaT RhaT L-rhamnose 26.6 7.1E+02 0.015 25.5 11.1 10 218-227 35-44 (290)
201 KOG2946 Uncharacterized conser 26.2 1.5E+02 0.0032 30.7 5.7 40 280-322 157-196 (234)
202 TIGR01666 YCCS hypothetical me 26.0 4.9E+02 0.011 30.8 10.7 54 288-341 434-490 (704)
203 PF13829 DUF4191: Domain of un 26.0 99 0.0021 31.8 4.5 38 433-470 147-184 (224)
204 PRK01766 multidrug efflux prot 25.9 8.2E+02 0.018 26.0 16.3 21 198-218 235-255 (456)
205 PRK13591 ubiA prenyltransferas 25.8 1.2E+02 0.0026 32.3 5.3 13 292-304 124-136 (307)
206 COG2715 SpmA Uncharacterized m 25.7 1.5E+02 0.0032 30.0 5.4 50 445-500 100-149 (206)
207 PF03303 WTF: WTF protein; In 25.0 8.2E+02 0.018 25.7 10.8 26 84-112 13-38 (247)
208 PRK13735 conjugal transfer mat 24.9 2.8E+02 0.0061 34.1 8.6 18 298-315 361-378 (942)
209 KOG3103 Rab GTPase interacting 24.9 2.3E+02 0.005 29.6 6.9 64 268-338 178-243 (249)
210 PRK10929 putative mechanosensi 24.8 1.4E+03 0.03 28.9 14.5 84 175-261 426-533 (1109)
211 PF04515 Choline_transpo: Plas 24.8 4.4E+02 0.0096 27.0 9.1 43 274-316 29-71 (334)
212 PRK10774 cell division protein 24.5 9.4E+02 0.02 26.5 11.9 38 219-256 106-151 (404)
213 PRK15127 multidrug efflux syst 24.5 1.6E+02 0.0035 36.0 6.6 43 248-290 883-926 (1049)
214 PF07907 YibE_F: YibE/F-like p 24.4 7.5E+02 0.016 25.5 10.5 32 224-255 9-40 (244)
215 PF03547 Mem_trans: Membrane t 24.4 8.2E+02 0.018 25.5 11.6 164 265-434 32-211 (385)
216 PF07856 Orai-1: Mediator of C 24.3 1.8E+02 0.004 28.6 5.9 41 254-298 110-152 (175)
217 PRK11463 fxsA phage T7 F exclu 24.1 4.7E+02 0.01 25.0 8.4 32 266-297 9-40 (148)
218 PF02366 PMT: Dolichyl-phospha 24.0 2.7E+02 0.0059 27.3 7.1 31 270-301 168-198 (245)
219 PF10724 DUF2516: Protein of u 24.0 1.5E+02 0.0032 26.9 4.7 16 268-283 48-63 (100)
220 KOG3142 Prenylated rab accepto 24.0 2.5E+02 0.0054 28.2 6.8 32 246-277 71-102 (187)
221 PLN00136 silicon transporter; 23.8 3E+02 0.0065 30.9 8.1 27 343-372 374-400 (482)
222 TIGR01667 YCCS_YHJK integral m 23.7 4.4E+02 0.0095 31.1 9.7 47 301-347 76-130 (701)
223 PF07235 DUF1427: Protein of u 23.6 55 0.0012 29.3 1.9 29 270-298 4-39 (90)
224 PF06645 SPC12: Microsomal sig 23.6 1.9E+02 0.0041 24.7 5.1 41 269-315 13-53 (76)
225 TIGR00540 hemY_coli hemY prote 23.6 1.7E+02 0.0038 31.1 6.1 25 263-287 1-25 (409)
226 KOG2292 Oligosaccharyltransfer 23.5 1.9E+02 0.0041 33.7 6.5 86 273-358 148-260 (751)
227 PRK14416 membrane protein; Pro 23.4 5.4E+02 0.012 26.1 9.0 11 299-309 147-157 (200)
228 PRK07668 hypothetical protein; 23.4 7.3E+02 0.016 26.0 10.2 24 327-351 181-204 (254)
229 PF10031 DUF2273: Small integr 23.2 1.4E+02 0.0031 23.9 4.0 22 299-320 22-43 (51)
230 PF04144 SCAMP: SCAMP family; 23.2 7E+02 0.015 24.2 13.3 54 210-265 32-85 (177)
231 COG3704 VirB6 Type IV secretor 23.1 3.5E+02 0.0076 30.1 8.3 20 163-182 105-124 (406)
232 PF14257 DUF4349: Domain of un 23.0 1E+02 0.0022 31.1 4.0 22 276-297 234-255 (262)
233 PF10943 DUF2632: Protein of u 22.7 2.3E+02 0.005 28.0 6.1 22 256-277 72-93 (233)
234 TIGR03155 sulfolob_CbsB cytoch 22.6 3.5E+02 0.0076 28.8 7.7 58 241-298 42-112 (302)
235 PF10329 DUF2417: Region of un 22.3 4.6E+02 0.0099 27.1 8.4 35 334-368 119-155 (232)
236 PF03176 MMPL: MMPL family; I 22.2 2.4E+02 0.0051 29.0 6.5 11 177-187 108-118 (333)
237 KOG0061 Transporter, ABC super 22.0 1.3E+03 0.027 26.8 13.3 125 213-338 360-510 (613)
238 TIGR02921 PEP_integral PEP-CTE 21.9 4.6E+02 0.01 31.2 9.1 98 247-362 7-110 (952)
239 PRK12882 ubiA prenyltransferas 21.9 5.4E+02 0.012 26.1 8.9 76 261-337 80-168 (276)
240 PRK00293 dipZ thiol:disulfide 21.9 6.3E+02 0.014 28.9 10.3 47 274-320 327-378 (571)
241 PF03142 Chitin_synth_2: Chiti 21.8 2.7E+02 0.0058 31.9 7.3 7 219-225 375-381 (527)
242 PF10225 DUF2215: Uncharacteri 21.8 2.4E+02 0.0051 29.0 6.4 39 284-322 74-114 (249)
243 PRK15033 tricarballylate utili 21.7 5.3E+02 0.011 28.7 9.2 17 249-265 238-254 (389)
244 PF03203 MerC: MerC mercury re 21.7 5.9E+02 0.013 22.8 8.8 25 253-277 6-30 (116)
245 PRK00247 putative inner membra 21.6 3.9E+02 0.0084 30.0 8.4 19 295-313 249-267 (429)
246 PF09972 DUF2207: Predicted me 21.6 3.5E+02 0.0077 28.8 7.9 17 335-351 455-471 (511)
247 PRK10614 multidrug efflux syst 21.4 2.4E+02 0.0052 34.4 7.3 66 234-299 848-918 (1025)
248 PF04632 FUSC: Fusaric acid re 21.3 1.1E+03 0.023 26.6 11.9 116 209-337 336-453 (650)
249 cd00084 HMG-box High Mobility 21.3 3.5E+02 0.0075 20.6 5.9 42 460-506 12-53 (66)
250 PRK13021 secF preprotein trans 21.3 4.3E+02 0.0093 28.0 8.2 21 206-226 114-134 (297)
251 TIGR00955 3a01204 The Eye Pigm 21.2 1.3E+03 0.027 26.5 15.4 18 286-303 445-463 (617)
252 cd01388 SOX-TCF_HMG-box SOX-TC 21.2 2.8E+02 0.0062 22.5 5.6 41 461-506 14-54 (72)
253 COG3086 RseC Positive regulato 21.1 3E+02 0.0065 26.9 6.4 53 259-327 73-127 (150)
254 TIGR02230 ATPase_gene1 F0F1-AT 20.8 4.4E+02 0.0095 24.0 7.1 46 260-305 39-97 (100)
255 COG1807 ArnT 4-amino-4-deoxy-L 20.6 4.1E+02 0.0089 29.4 8.4 47 270-317 164-211 (535)
256 COG5552 Uncharacterized conser 20.5 2.4E+02 0.0052 24.9 5.1 35 439-475 2-36 (88)
257 PF07331 TctB: Tripartite tric 20.3 6.2E+02 0.013 22.6 11.7 27 206-232 34-60 (141)
258 PLN00151 potassium transporter 20.3 4E+02 0.0087 32.4 8.5 91 205-305 466-576 (852)
259 TIGR03097 PEP_O_lig_1 probable 20.3 1.1E+03 0.023 25.4 13.6 24 329-352 200-223 (402)
260 PRK05951 ubiA prenyltransferas 20.2 6.6E+02 0.014 26.1 9.3 17 288-304 117-133 (296)
No 1
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-44 Score=374.02 Aligned_cols=294 Identities=42% Similarity=0.673 Sum_probs=245.9
Q ss_pred hHHHHhhhhhHHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 009016 190 LMTNIYNAHDYVSRKVQQVYPVALNHL-GHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFK 268 (546)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~ 268 (546)
++.-.++.||.+ .++||.|+..+ +++|.+.|++ .+|+||++||||+++++|++++|+||||+++|.+||.++.|
T Consensus 11 ~~~~~~k~~~~~----~~~~p~~~~~~~~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~~s~~ql~~ 85 (490)
T KOG0720|consen 11 VKLRVYKGRDLV----LTKMPLVFSVVFMHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSANSMGQLTK 85 (490)
T ss_pred ecccccchhhhh----hhcCCcccchhhccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeeccccccccc
Confidence 445566777755 55666666555 6788888888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcchhhHHHHHHHHhhhhhheeehhhhh
Q 009016 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLG 348 (546)
Q Consensus 269 ~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~h~r~~~~i~~~y~vy~~~~~~gWlg 348 (546)
++++++++.+++.|.|.++++.++++||++++|+| +||.+..+.+- ++|.++|+ +.+.|+.|.+-++.+|++
T Consensus 86 ~~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~s~kt~w~ 157 (490)
T KOG0720|consen 86 FILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSALSYKTWWG 157 (490)
T ss_pred cccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceeeeccchhhh
Confidence 99999999999999999999999999999999999 99999888777 89999998 788999999999999999
Q ss_pred HHHhhhhhhhhHHHHHHHHhhhhcccCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009016 349 LLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMT 428 (546)
Q Consensus 349 ~~ls~nlsFls~DiL~~fLq~~~ne~~~ssp~eqs~sss~~~~~fs~ess~~Ssses~ss~ss~~~~~~psts~~ds~~t 428 (546)
.++..++.++.-|...+|.+.....+.. ....+....+..+.++++.-++..+......-+...+
T Consensus 158 ~~~k~l~~~i~l~f~~~f~~~~~~~~~~---------------~r~l~~vk~~~~e~g~~tv~~~~~g~~~e~~va~n~t 222 (490)
T KOG0720|consen 158 LTLKLLRAVILLDFSIYFERNKIIQQTA---------------DRPLEPVKDSGAEEGDETVESRDYGCKKEIPVATNAT 222 (490)
T ss_pred hcchhhhhhhhhhcceeeeeehhhHHHH---------------hhhcchhhhhccccCCCchhcCCcccccccccccchh
Confidence 9999999999999999988866655411 1111122222233333333444444444444455555
Q ss_pred c-HHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 429 S-EDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 429 s-~eeierilk~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
+ .+++.+.++..|+|.+|||++ +++.++|||.|||+|.++|||||+ .|.|+|.|+.++.||++|+|+.+|+.||.+
T Consensus 223 ~~adrl~re~~~~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 223 SFADRLSRELNILDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hHHHhhhhhhcCCCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 5 577889999999999999999 999999999999999999999998 699999999999999999999999999998
Q ss_pred HhhhhhH
Q 009016 508 LRREELL 514 (546)
Q Consensus 508 L~~ee~~ 514 (546)
+.+++..
T Consensus 300 ~~kene~ 306 (490)
T KOG0720|consen 300 LKKENEL 306 (490)
T ss_pred HHHHHHH
Confidence 8776654
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.3e-21 Score=202.16 Aligned_cols=82 Identities=40% Similarity=0.590 Sum_probs=73.4
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhhh------
Q 009016 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------ 511 (546)
Q Consensus 438 k~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~~e------ 511 (546)
..+|||+||||++ +|+.+|||+||||||++||||+|+++++|+|+|++|++|||||+||+||+.||+.-...
T Consensus 2 ~~~dyYeiLGV~k--~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~ 79 (371)
T COG0484 2 AKRDYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGF 79 (371)
T ss_pred CccchhhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCc
Confidence 3579999999999 99999999999999999999999988999999999999999999999999999743222
Q ss_pred ----------hhHHHHHhhh
Q 009016 512 ----------ELLDYFRRFQ 521 (546)
Q Consensus 512 ----------e~~~~f~~F~ 521 (546)
.+.++|.+|.
T Consensus 80 gg~g~~~fgg~~~DIF~~~F 99 (371)
T COG0484 80 GGFGFGGFGGDFGDIFEDFF 99 (371)
T ss_pred CCCCcCCCCCCHHHHHHHhh
Confidence 2567788887
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.7e-20 Score=189.31 Aligned_cols=72 Identities=43% Similarity=0.610 Sum_probs=68.2
Q ss_pred HHhCCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 009016 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (546)
Q Consensus 435 rilk~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL 508 (546)
.+...+|||+||||++ +|+..|||+||||||++||||||+++|.|.+.|++|+.||+||+||.+|+.||...
T Consensus 11 ~v~~~rDfYelLgV~k--~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPK--NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred hhhcCCCHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 4556789999999999 99999999999999999999999999999999999999999999999999999854
No 4
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-18 Score=174.94 Aligned_cols=66 Identities=41% Similarity=0.676 Sum_probs=64.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|+|+||||++ +++.++|||+||+|+++||||+++++|++.++|++||+||+||+||.+|..||+.
T Consensus 31 ~~LYdVLgl~k--~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 31 LDLYDVLGLPK--TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hHHHHHhCCCc--ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 59999999999 9999999999999999999999998899999999999999999999999999995
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=5e-18 Score=176.89 Aligned_cols=66 Identities=38% Similarity=0.607 Sum_probs=63.5
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||+||||++ +|+.+|||+|||+||++||||+++++++|+++|++|++||+||+||.+|+.||+.
T Consensus 3 ~dyY~vLgv~~--~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~ 68 (369)
T PRK14288 3 LSYYEILEVEK--HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRY 68 (369)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 69999999999 9999999999999999999999987788999999999999999999999999984
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.3e-17 Score=174.04 Aligned_cols=66 Identities=35% Similarity=0.513 Sum_probs=62.6
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.+|||++|||++ +|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.||+.||+.
T Consensus 3 ~~dyY~~Lgv~~--~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~ 68 (372)
T PRK14296 3 KKDYYEVLGVSK--TASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQF 68 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence 479999999999 999999999999999999999997 478999999999999999999999999973
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.2e-17 Score=173.34 Aligned_cols=67 Identities=42% Similarity=0.629 Sum_probs=64.2
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.+|||++|||++ +|+.+|||+|||+||++||||+++++++|+++|++|++||+||+||.||+.||+.
T Consensus 8 ~~Dyy~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 8 EKDFYKELGVSS--DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 379999999999 9999999999999999999999987788999999999999999999999999985
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.5e-17 Score=170.74 Aligned_cols=67 Identities=43% Similarity=0.646 Sum_probs=63.8
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||++|||++ +|+.+|||+|||+||++||||+++++++|+++|++|++||+||+||.+|+.||+.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (372)
T PRK14286 3 ERSYYDILGVSK--SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQF 69 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 369999999999 9999999999999999999999987788999999999999999999999999973
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.5e-17 Score=167.13 Aligned_cols=67 Identities=42% Similarity=0.608 Sum_probs=62.9
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~-~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.+|||++|||++ +|+.+|||+|||+|+++||||+++++ ++|+++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 70 (369)
T PRK14282 3 KKDYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRF 70 (369)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhc
Confidence 479999999999 99999999999999999999999764 67899999999999999999999999973
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.6e-17 Score=168.11 Aligned_cols=68 Identities=40% Similarity=0.624 Sum_probs=64.3
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 438 k~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
+..|||+||||++ +|+.+|||+|||+|+++||||+++++++|+++|++|++||+||+||.+|+.||..
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 70 (386)
T PRK14277 3 AKKDYYEILGVDR--NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQF 70 (386)
T ss_pred CCCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 3479999999999 9999999999999999999999987788999999999999999999999999973
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.4e-16 Score=165.88 Aligned_cols=66 Identities=47% Similarity=0.696 Sum_probs=63.5
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||++|||++ +|+.+|||+|||+|+++||||+++++++|.++|++|++||+||+||.+|+.||+.
T Consensus 3 ~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~ 68 (365)
T PRK14285 3 RDYYEILGLSK--GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRF 68 (365)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhc
Confidence 69999999999 9999999999999999999999987788999999999999999999999999983
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.65 E-value=1.7e-16 Score=125.36 Aligned_cols=63 Identities=40% Similarity=0.713 Sum_probs=59.8
Q ss_pred CcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHHHHcCChhhHHHHH
Q 009016 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYD 505 (546)
Q Consensus 441 DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~-eA~E~Fk~IneAYeVLSDP~kRa~YD 505 (546)
|||+||||++ +++.++||++|+++++++|||++++++ .+.+.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~--~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPP--DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTT--TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCC--CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999 999999999999999999999987655 68999999999999999999999998
No 13
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-16 Score=164.12 Aligned_cols=64 Identities=45% Similarity=0.637 Sum_probs=60.9
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.+.||+||||++ +|+.+|||||||+|+++||||||++ +.|+|++|.+|||||+||++|+.||+.
T Consensus 3 ~~~~y~il~v~~--~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~ 66 (337)
T KOG0712|consen 3 NTKLYDILGVSP--DASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQY 66 (337)
T ss_pred ccccceeeccCC--CcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 468999999999 9999999999999999999999964 899999999999999999999999984
No 14
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.9e-16 Score=164.69 Aligned_cols=67 Identities=45% Similarity=0.667 Sum_probs=63.9
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||+||||++ +|+.+|||+|||+|+++||||+++++++|++.|++|++||+||+||.+|+.||+.
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~ 69 (366)
T PRK14294 3 KRDYYEILGVTR--DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQY 69 (366)
T ss_pred CCChHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 479999999999 9999999999999999999999987788999999999999999999999999974
No 15
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.8e-16 Score=166.36 Aligned_cols=65 Identities=45% Similarity=0.721 Sum_probs=63.0
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
.|||+||||++ +|+.+|||+|||+|+++||||+++++++|+++|++|++||+||+||.+|+.||+
T Consensus 9 ~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 9 KDYYKVLGVPK--DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 69999999999 999999999999999999999998778899999999999999999999999998
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.1e-16 Score=164.97 Aligned_cols=66 Identities=39% Similarity=0.594 Sum_probs=62.4
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||++|||++ +|+.+|||+|||+|+++||||+++ +++|+++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~ 68 (371)
T PRK14287 3 KRDYYEVLGVDR--NASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQF 68 (371)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhh
Confidence 369999999999 999999999999999999999997 478999999999999999999999999984
No 17
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-16 Score=161.25 Aligned_cols=70 Identities=46% Similarity=0.680 Sum_probs=67.0
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhh
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~~ 510 (546)
..|||+|||+++ +++..+|++|||+.++++||||||++|.|.+.|+.+.+||+||+|+.+|+.||+.++.
T Consensus 4 ~~dyY~lLgi~~--~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISE--DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 479999999999 9999999999999999999999999999999999999999999999999999997654
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.8e-16 Score=165.45 Aligned_cols=67 Identities=43% Similarity=0.601 Sum_probs=63.2
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 438 k~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
...|||++|||++ +|+.+|||+|||+||++||||++++ +.|+++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~ 69 (378)
T PRK14283 3 EKRDYYEVLGVDR--NADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQF 69 (378)
T ss_pred CcCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhh
Confidence 3579999999999 9999999999999999999999974 78999999999999999999999999973
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.2e-16 Score=164.85 Aligned_cols=67 Identities=43% Similarity=0.625 Sum_probs=63.8
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||++|||++ +|+.+|||+|||+|+++||||+++++++|+++|++|++||+||+||.+|+.||..
T Consensus 3 ~~~~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 69 (373)
T PRK14301 3 QRDYYEVLGVSR--DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRF 69 (373)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence 369999999999 9999999999999999999999987788999999999999999999999999974
No 20
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.2e-16 Score=164.96 Aligned_cols=66 Identities=42% Similarity=0.684 Sum_probs=63.4
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||++|||++ +|+.+|||+|||+|+++||||+++++++|+++|++|++||++|+||.+|+.||+.
T Consensus 4 ~d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 69 (380)
T PRK14297 4 KDYYEVLGLEK--GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQF 69 (380)
T ss_pred CChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence 69999999999 9999999999999999999999987788999999999999999999999999973
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=3e-16 Score=158.73 Aligned_cols=66 Identities=38% Similarity=0.580 Sum_probs=62.6
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||+||||++ +|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||..
T Consensus 3 ~~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~ 68 (291)
T PRK14299 3 YKDYYAILGVPK--NASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTY 68 (291)
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 469999999999 999999999999999999999997 578999999999999999999999999974
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.4e-16 Score=162.79 Aligned_cols=67 Identities=49% Similarity=0.738 Sum_probs=63.7
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||+||||++ +|+.+|||+|||+|+++||||++++++.|+++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~d~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~ 69 (371)
T PRK10767 3 KRDYYEVLGVSR--NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQY 69 (371)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhc
Confidence 469999999999 9999999999999999999999987788999999999999999999999999973
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.9e-16 Score=163.77 Aligned_cols=66 Identities=44% Similarity=0.693 Sum_probs=63.1
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||+||||++ +|+.+|||+|||+|+++||||++++++.|+++|++|++||++|+||.+|+.||+.
T Consensus 1 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 66 (391)
T PRK14284 1 MDYYTILGVSK--TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRY 66 (391)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 38999999999 9999999999999999999999987788999999999999999999999999973
No 24
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.6e-16 Score=163.49 Aligned_cols=66 Identities=41% Similarity=0.591 Sum_probs=62.3
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||+||||++ +|+.+|||+|||+|+++||||+++. +.|+++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 68 (380)
T PRK14276 3 NTEYYDRLGVSK--DASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQY 68 (380)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhc
Confidence 369999999999 9999999999999999999999974 77999999999999999999999999973
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.1e-16 Score=163.12 Aligned_cols=64 Identities=48% Similarity=0.640 Sum_probs=61.8
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
+|||+||||++ +|+.+|||+|||+||++||||+++ +++|+++|++|++||+||+||.+|+.||+
T Consensus 3 ~d~y~iLgv~~--~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSR--NASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 69999999999 999999999999999999999997 57899999999999999999999999997
No 26
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.2e-16 Score=163.08 Aligned_cols=66 Identities=47% Similarity=0.672 Sum_probs=62.3
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.+|||+||||++ +|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||+.
T Consensus 4 ~~d~y~iLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (377)
T PRK14298 4 TRDYYEILGLSK--DASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRF 69 (377)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhc
Confidence 369999999999 999999999999999999999997 478899999999999999999999999973
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=5.6e-16 Score=161.86 Aligned_cols=66 Identities=42% Similarity=0.593 Sum_probs=62.3
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||+||||++ +|+.+|||+|||+|+++||||+++. +.|+++|++|++||+||+||.+|+.||+.
T Consensus 3 ~~~~y~iLgv~~--~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 68 (376)
T PRK14280 3 KRDYYEVLGVSK--SASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQF 68 (376)
T ss_pred CCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhc
Confidence 369999999999 9999999999999999999999974 77999999999999999999999999983
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=5.7e-16 Score=162.92 Aligned_cols=66 Identities=47% Similarity=0.703 Sum_probs=63.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||+||||++ +|+.+|||+|||+|+++||||++++++.|++.|++|++||++|+||.+|+.||..
T Consensus 3 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 68 (397)
T PRK14281 3 RDYYEVLGVSR--SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQF 68 (397)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 69999999999 8999999999999999999999987788999999999999999999999999974
No 29
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.61 E-value=4.8e-16 Score=165.12 Aligned_cols=62 Identities=45% Similarity=0.655 Sum_probs=58.6
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||++|||++ +|+.+|||+|||+||++|||||+++ .++|++|++||+||+||.+|+.||+.
T Consensus 28 ~d~Y~vLGV~~--~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~ 89 (421)
T PTZ00037 28 EKLYEVLNLSK--DCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEY 89 (421)
T ss_pred hhHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhh
Confidence 69999999999 9999999999999999999999852 48999999999999999999999974
No 30
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.1e-16 Score=161.87 Aligned_cols=65 Identities=45% Similarity=0.633 Sum_probs=62.1
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
+|||++|||++ +|+.+|||+|||+|+++||||+|+. +.|+++|++|++||++|+||.+|+.||..
T Consensus 3 ~d~Y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~ 67 (382)
T PRK14291 3 KDYYEILGVSR--NATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQF 67 (382)
T ss_pred CCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence 69999999999 9999999999999999999999974 78899999999999999999999999974
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=9.8e-16 Score=160.29 Aligned_cols=67 Identities=46% Similarity=0.698 Sum_probs=64.0
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||++|||++ +|+.+|||+|||+|+++||||+++++++|.++|++|++||++|+||.+|+.||..
T Consensus 4 ~~~~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~ 70 (386)
T PRK14289 4 KRDYYEVLGVSK--TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQF 70 (386)
T ss_pred cCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 479999999999 9999999999999999999999987788999999999999999999999999984
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.2e-15 Score=156.78 Aligned_cols=65 Identities=43% Similarity=0.677 Sum_probs=62.0
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~-eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
.|||+||||++ +|+.+|||+|||+|+++||||+++.++ +|+++|++|++||++|+||.+|+.||.
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 3 KDYYKILGVDR--NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 69999999999 999999999999999999999997654 799999999999999999999999997
No 33
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-15 Score=159.65 Aligned_cols=66 Identities=42% Similarity=0.627 Sum_probs=62.8
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~-~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
++.||++|||.+ +++..+||++||+||++||||||++. ++|.+.|+.|+.||+|||||..|+.||.
T Consensus 7 ~~c~YE~L~v~~--~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~ 73 (508)
T KOG0717|consen 7 KRCYYEVLGVER--DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDS 73 (508)
T ss_pred hhHHHHHhcccc--cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHH
Confidence 479999999999 99999999999999999999998765 7799999999999999999999999997
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.3e-15 Score=151.85 Aligned_cols=68 Identities=41% Similarity=0.577 Sum_probs=64.4
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhh
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~~ 510 (546)
.|||++|||++ +|+..|||+||++|+++||||.+.. ++|.+.|++|.+|||+|+|+.+|..||..+..
T Consensus 43 ~d~Y~vLgv~~--~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSR--NATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCC--CCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 49999999999 9999999999999999999999986 59999999999999999999999999997764
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.56 E-value=3.2e-15 Score=154.49 Aligned_cols=63 Identities=44% Similarity=0.705 Sum_probs=60.6
Q ss_pred CcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 441 DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
|||++|||++ +|+.+|||+|||+++++||||+++ ++.++++|++|++||++|+||.+|+.||.
T Consensus 1 d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 7999999999 999999999999999999999997 57789999999999999999999999998
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.56 E-value=3.8e-15 Score=151.62 Aligned_cols=66 Identities=33% Similarity=0.522 Sum_probs=62.2
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..|||++|||++ +++.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||..
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~ 68 (306)
T PRK10266 3 LKDYYAIMGVKP--TDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQL 68 (306)
T ss_pred cCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 369999999999 8999999999999999999999864 67999999999999999999999999974
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.9e-15 Score=154.23 Aligned_cols=65 Identities=42% Similarity=0.630 Sum_probs=61.9
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||++|||++ +|+.++||+|||+|+++||||+++ ++.|+++|++|++||++|+||.+|+.||..
T Consensus 2 ~d~y~~Lgv~~--~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~ 66 (371)
T PRK14292 2 MDYYELLGVSR--TASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRF 66 (371)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhc
Confidence 59999999999 999999999999999999999997 478999999999999999999999999983
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.4e-15 Score=155.02 Aligned_cols=64 Identities=41% Similarity=0.591 Sum_probs=61.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
.|||+||||++ +|+.+|||+|||+++++||||+++ ++.++++|++|++||++|+||.+|+.||.
T Consensus 3 ~~~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 3 QDYYQILGVSK--TASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 69999999999 999999999999999999999997 46788999999999999999999999998
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=8.6e-15 Score=152.81 Aligned_cols=65 Identities=45% Similarity=0.629 Sum_probs=61.6
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.|||+||||++ +++.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||..
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~ 67 (374)
T PRK14293 3 ADYYEILGVSR--DADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQF 67 (374)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 69999999999 9999999999999999999999974 67899999999999999999999999973
No 40
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.53 E-value=1.4e-14 Score=112.37 Aligned_cols=58 Identities=48% Similarity=0.751 Sum_probs=54.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHHHHcCChh
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-NEKAVEAFKKLQNAYEVLFDSF 499 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~-~~eA~E~Fk~IneAYeVLSDP~ 499 (546)
.|||++|||++ +++.++||++|+++++++|||++++ .+.+.+.|++|++||++|+||.
T Consensus 1 ~~~y~vLgl~~--~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999 8999999999999999999999975 5789999999999999999985
No 41
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-14 Score=131.98 Aligned_cols=67 Identities=42% Similarity=0.681 Sum_probs=63.4
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-AVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~e-A~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..+||+||||++ +++.+|||++||+++++||||+++.++. +.+.|+.|++||++|+|+.+|+.||..
T Consensus 5 ~~~~y~iLgv~~--~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPP--NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 469999999998 9999999999999999999999988775 999999999999999999999999983
No 42
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.6e-14 Score=152.12 Aligned_cols=65 Identities=38% Similarity=0.650 Sum_probs=61.1
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~---~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
.|||.+|+|++ +|+.+|||+|||++++.|||||..++ ..|++.|++|++|||||+||++|+.||.
T Consensus 9 ~e~Ya~LNlpk--dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 9 IELYALLNLPK--DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred hhHHHHhCCCc--ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 59999999999 99999999999999999999998753 4588999999999999999999999998
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.50 E-value=4.1e-14 Score=107.77 Aligned_cols=55 Identities=44% Similarity=0.680 Sum_probs=51.7
Q ss_pred CcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 009016 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 497 (546)
Q Consensus 441 DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSD 497 (546)
|||++|||++ +++.++||++||++++++|||++++.+.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~--~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999 899999999999999999999997557789999999999999986
No 44
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.48 E-value=4.3e-14 Score=160.61 Aligned_cols=67 Identities=33% Similarity=0.434 Sum_probs=62.8
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 438 k~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..++||++|||++ +|+..+||+|||+||++||||++++ +.|.++|++|++||+||+||.+|+.||..
T Consensus 571 ~d~dYYdILGVs~--dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~ 637 (1136)
T PTZ00341 571 PDTLFYDILGVGV--NADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKF 637 (1136)
T ss_pred CCCChHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 3479999999999 9999999999999999999999986 47889999999999999999999999983
No 45
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.5e-13 Score=130.32 Aligned_cols=72 Identities=26% Similarity=0.408 Sum_probs=63.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHH-----HHHHHHHHHHHHHHcCChhhHHHHHHHHhhh
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 511 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~e-----A~E~Fk~IneAYeVLSDP~kRa~YD~eL~~e 511 (546)
.|||++|||++.++++..+||++||++++++|||++...+. +.+.|..|++||++|+||.+|+.|+-.+.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~ 77 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF 77 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence 38999999999777899999999999999999999865432 5678999999999999999999999877643
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.6e-14 Score=138.37 Aligned_cols=69 Identities=39% Similarity=0.666 Sum_probs=63.2
Q ss_pred hCCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 437 lk~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~--~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
....|+|+||||.+ +|+..+||+||+++++++|||+++ ...+|.+.|+.++.||.||+|..+|+.||+.
T Consensus 11 f~~~d~YevLGVer--~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDet 81 (264)
T KOG0719|consen 11 FNKKDLYEVLGVER--DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDET 81 (264)
T ss_pred ccccCHHHHhhhcc--cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 34569999999999 999999999999999999999994 3466899999999999999999999999984
No 47
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=2.3e-13 Score=128.72 Aligned_cols=71 Identities=31% Similarity=0.454 Sum_probs=62.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHH---HHHHHHHHHHHHHHcCChhhHHHHHHHHhh
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~e---A~E~Fk~IneAYeVLSDP~kRa~YD~eL~~ 510 (546)
.|||++|||++.++++..+|+++||++++++|||++...++ +.+.+..|++||++|+||.+|+.|+..+.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g 75 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN 75 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 69999999999767899999999999999999999864322 345688999999999999999999988764
No 48
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=2.8e-13 Score=129.12 Aligned_cols=75 Identities=28% Similarity=0.359 Sum_probs=66.6
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHH-----HHHHHHHHHHHHHHcCChhhHHHHHHHHhhhh
Q 009016 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (546)
Q Consensus 438 k~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~e-----A~E~Fk~IneAYeVLSDP~kRa~YD~eL~~ee 512 (546)
...+||++|||++.++++..+|+++||++++++|||++.+.+. +.+.+..||+||++|+||.+|+.|+-.+.+.+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~ 81 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHE 81 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence 3579999999999888999999999999999999999865433 56789999999999999999999999887643
No 49
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=3.9e-13 Score=128.34 Aligned_cols=72 Identities=32% Similarity=0.442 Sum_probs=63.2
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHH-----HHHHHHHHHHHHHcCChhhHHHHHHHHhhh
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKA-----VEAFKKLQNAYEVLFDSFKRKAYDDELRRE 511 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA-----~E~Fk~IneAYeVLSDP~kRa~YD~eL~~e 511 (546)
.|||++|||++.++++..+|+++||++++++|||++...+.+ .+.+..||+||++|+||.+|+.|+-.+.+.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 699999999997778999999999999999999998755443 345689999999999999999999877653
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.3e-13 Score=130.61 Aligned_cols=70 Identities=29% Similarity=0.431 Sum_probs=63.4
Q ss_pred hCCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 009016 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (546)
Q Consensus 437 lk~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL 508 (546)
.+..|+|+||||+| +++..|||+|||+|+++|||||++...+.++.|..|.+||+.|+|+..|+.|.+.-
T Consensus 96 ~~~fDPyEILGl~p--gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG 165 (230)
T KOG0721|consen 96 RQKFDPYEILGLDP--GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYG 165 (230)
T ss_pred hhcCCcHHhhCCCC--CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhC
Confidence 34579999999999 99999999999999999999999765667788999999999999999999998743
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.38 E-value=7.7e-13 Score=147.86 Aligned_cols=66 Identities=35% Similarity=0.545 Sum_probs=62.4
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL 508 (546)
.|||+||||++ +++.++||++||+|+++||||++++ +.+.+.|++|++||++|+||.+|+.||...
T Consensus 2 ~DYYeVLGVs~--dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDR--DADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 59999999999 9999999999999999999999975 788899999999999999999999999853
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.36 E-value=2.5e-13 Score=127.49 Aligned_cols=62 Identities=27% Similarity=0.466 Sum_probs=57.4
Q ss_pred CCcccccccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 440 ~DyYeILGL~~~~~A--S~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
..+|++|||++ +| +.++||+|||++++++||||++. ++.|++|++||++|+|+.+|..||..
T Consensus 5 ~~l~~vLGl~~--~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~ 68 (153)
T PHA03102 5 KELMDLLGLPR--SAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDG 68 (153)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhcccccc
Confidence 46799999999 89 99999999999999999999753 57999999999999999999999984
No 53
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.2e-12 Score=127.58 Aligned_cols=72 Identities=32% Similarity=0.538 Sum_probs=67.0
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhhhhhH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL 514 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~~ee~~ 514 (546)
.|.|++|||.+ +++..||.+|||+|++++|||++++ +++.+.|+.|..||++|.|...|..||-.+..++..
T Consensus 33 enCYdVLgV~R--ea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd~~ 104 (329)
T KOG0722|consen 33 ENCYDVLGVAR--EANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHPDEV 104 (329)
T ss_pred hhHHHHhhhhh--hccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCchHH
Confidence 59999999999 8999999999999999999999985 677799999999999999999999999998876654
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=1.4e-11 Score=128.68 Aligned_cols=70 Identities=36% Similarity=0.476 Sum_probs=63.5
Q ss_pred HhCCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCH---HHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 436 LLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE---KAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 436 ilk~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~---eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
....+|||+||||.+ +|+..||.|||||++++||||...+.+ .|+.+|..|..|-|||+||++|+.||+.
T Consensus 390 qs~kRDYYKILGVkR--nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKR--NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HhccchHHHHhhhcc--cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 344689999999999 999999999999999999999987543 3888999999999999999999999984
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.9e-11 Score=116.09 Aligned_cols=69 Identities=43% Similarity=0.598 Sum_probs=61.4
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~-~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~ 509 (546)
..|||++|+|.+ +++.++|++||+++++++|||+++.. ..+.++|+++.+||++|+||.+|..||..-.
T Consensus 2 ~~d~~~~l~i~~--~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIAR--SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccc--cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 469999999998 88888999999999999999998764 2455689999999999999999999998553
No 56
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=9.9e-11 Score=114.48 Aligned_cols=91 Identities=35% Similarity=0.491 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCCCcHHHHHHHhCCC------CcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHH
Q 009016 416 GVPSTSGDDSEMTSEDEVVRLLNCT------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKL 488 (546)
Q Consensus 416 ~~psts~~ds~~ts~eeierilk~~------DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~-~eA~E~Fk~I 488 (546)
.+.++.+.|+.+++.++|+|++++. ++|++|.|.| ..+.++||+.||+|++..|||||+++ +.|..+|..+
T Consensus 23 evk~~ek~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdp--ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdiv 100 (250)
T KOG1150|consen 23 EVKSIEKRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDP--EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIV 100 (250)
T ss_pred HHHhhhhhhcccCcHHHHHHHhcCCccccccChHHHHhcCC--CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHH
Confidence 4456677889999999999999853 8899999999 89999999999999999999999988 7799999999
Q ss_pred HHHHHHcCChhhHHHHHHHH
Q 009016 489 QNAYEVLFDSFKRKAYDDEL 508 (546)
Q Consensus 489 neAYeVLSDP~kRa~YD~eL 508 (546)
.+||..|-|+..|..-+.-.
T Consensus 101 kKA~k~l~n~~~rkr~~~~y 120 (250)
T KOG1150|consen 101 KKAYKLLENDKIRKRCLDVY 120 (250)
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 99999999999877766533
No 57
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.09 E-value=2.3e-10 Score=109.28 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=63.8
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCH-----HHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~-----eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~ 509 (546)
+.|||++||||+.+.++..+++++|+++.+++|||+....+ .+.+....||+||.+|.||.+|+.|--.+.
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 36999999999988899999999999999999999986543 255678999999999999999999998887
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.9e-10 Score=122.06 Aligned_cols=71 Identities=39% Similarity=0.653 Sum_probs=65.6
Q ss_pred HHhCCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 435 rilk~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~-~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
...+.+|||.|||+.+ +++.+|||++||++++.+|||++.++ .+++..|+++-+||.+|+||.+|..||..
T Consensus 368 kkSkRkd~ykilGi~~--~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISR--NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HHhhhhhHHHHhhhhh--hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 3345679999999999 99999999999999999999999887 78899999999999999999999999974
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.01 E-value=3.1e-10 Score=114.53 Aligned_cols=56 Identities=39% Similarity=0.528 Sum_probs=50.5
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCC---C----HHHHHHHHHHHHHHHHcCC
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N----EKAVEAFKKLQNAYEVLFD 497 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~---~----~eA~E~Fk~IneAYeVLSD 497 (546)
.++|++|||++ ++|.+|||++||+|+++||||++.+ + +.+.++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~--~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSE--SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999 9999999999999999999999743 1 3588999999999999974
No 60
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.01 E-value=2.6e-10 Score=103.08 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=46.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 496 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLS 496 (546)
.++|++|||++ +++.+|||++||++++++|||+.. + .+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~--~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISP--TASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 58999999999 899999999999999999999963 3 468899999999985
No 61
>PHA02624 large T antigen; Provisional
Probab=98.95 E-value=6.4e-10 Score=123.19 Aligned_cols=59 Identities=25% Similarity=0.460 Sum_probs=55.3
Q ss_pred CCcccccccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHH
Q 009016 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY 504 (546)
Q Consensus 440 ~DyYeILGL~~~~~A--S~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~Y 504 (546)
.++|++|||++ ++ +.++||+|||+++++||||+.. + ++.|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~--~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPM--AAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 58999999999 89 9999999999999999999974 2 57999999999999999999998
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.92 E-value=2e-09 Score=101.20 Aligned_cols=59 Identities=29% Similarity=0.368 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCH-----HHHHHHHHHHHHHHHcCChhhHHHHHHHHhhh
Q 009016 453 NVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 511 (546)
Q Consensus 453 ~AS~eEIKKAYRKLAlk~HPDKn~~~~-----eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~~e 511 (546)
..+..+|+++||++++++|||++...+ .+.+.+..|++||++|+||.+|+.|+-.|.+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~ 65 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI 65 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 578899999999999999999975432 26789999999999999999999999988743
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.73 E-value=8.8e-09 Score=110.33 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=61.4
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 438 k~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~-----~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
+.-|+|||||++. +++..+||++||+|..++||||.+. .++-+|.++.|++||+.|+|...|..|-..
T Consensus 96 ~~fDPyEILGI~~--~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~y 168 (610)
T COG5407 96 RGFDPYEILGIDQ--DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNY 168 (610)
T ss_pred cCCChHHhhcccC--CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 3469999999999 8999999999999999999999754 256789999999999999999999999774
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.9e-09 Score=106.65 Aligned_cols=71 Identities=37% Similarity=0.457 Sum_probs=62.6
Q ss_pred hCCCCcccccccccC-CCCCHHHHHHHHHHHHHhhCCCCC--CCCHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 437 LNCTDHYSALGLSRF-ENVDVSILKREYRKKAMLVHPDKN--MGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 437 lk~~DyYeILGL~~~-~~AS~eEIKKAYRKLAlk~HPDKn--~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
.+..|+|.+|||+.+ ..++..+|.++.++.+.+||||+. .++-...+.|+.|+.||+||+|+.+|.+||.-
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 345799999999987 358899999999999999999997 33456789999999999999999999999974
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.3e-06 Score=97.60 Aligned_cols=54 Identities=30% Similarity=0.420 Sum_probs=47.1
Q ss_pred CCcccccccccCC--CCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 009016 440 TDHYSALGLSRFE--NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 496 (546)
Q Consensus 440 ~DyYeILGL~~~~--~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLS 496 (546)
.+.|+||.++-.. ..+.+.||++|+||+.+|||||| |+-.|.|.++|+|||.|+
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHH
Confidence 4789999998642 33558999999999999999999 567899999999999998
No 66
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=9.2e-05 Score=70.66 Aligned_cols=73 Identities=25% Similarity=0.374 Sum_probs=62.7
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhh
Q 009016 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (546)
Q Consensus 438 k~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~-----~~eA~E~Fk~IneAYeVLSDP~kRa~YD~eL~~ 510 (546)
...+||+++|....+..+++.++.-|.-..+++|||+... ...|.+...++++||.+|.||-+|+.|--.+.+
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 4469999999887767888888889999999999999422 145889999999999999999999999987766
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00011 Score=74.25 Aligned_cols=55 Identities=24% Similarity=0.485 Sum_probs=49.0
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHH-HcCC
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYE-VLFD 497 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYe-VLSD 497 (546)
..+|.+|||.. .++.++++.+|.+|++++|||... ++...+.|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e--~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEE--GADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccc--cCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 48999999999 899999999999999999999985 3556789999999998 7764
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0022 Score=57.99 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=44.0
Q ss_pred CcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCCh
Q 009016 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (546)
Q Consensus 441 DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP 498 (546)
.--.||||.+ +++.+.||.++|+.-..-|||+... | -.-.+|+||+++|...
T Consensus 57 EA~lIL~v~~--s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTP--SLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCc--cccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 3467999999 9999999999999999999999964 3 3345899999999754
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0021 Score=61.28 Aligned_cols=69 Identities=29% Similarity=0.419 Sum_probs=57.7
Q ss_pred CcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHH-----HHHHHHHHHHHHHHcCChhhHHHHHHHHh
Q 009016 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (546)
Q Consensus 441 DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~e-----A~E~Fk~IneAYeVLSDP~kRa~YD~eL~ 509 (546)
+++..+|+++.+..+.+.++..|+.+.+.+|||+....+. +-+.+..++.||.+|.||-+|+.|--.+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 5677788887666678889999999999999999855432 44689999999999999999999987665
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.39 E-value=0.015 Score=63.56 Aligned_cols=43 Identities=33% Similarity=0.489 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCC---HH----HHHHHHHHHHHHHHc
Q 009016 453 NVDVSILKREYRKKAMLVHPDKNMGN---EK----AVEAFKKLQNAYEVL 495 (546)
Q Consensus 453 ~AS~eEIKKAYRKLAlk~HPDKn~~~---~e----A~E~Fk~IneAYeVL 495 (546)
=++.++|||+|||.++.+||||.++. .. |++.|..+++|+...
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 36899999999999999999998664 22 555666666666543
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.015 Score=55.47 Aligned_cols=54 Identities=35% Similarity=0.538 Sum_probs=46.7
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHHHHHc
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-------EKAVEAFKKLQNAYEVL 495 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~-------~eA~E~Fk~IneAYeVL 495 (546)
.+.|.+||++. ..+..+|+++|+++....|||+-... ..+.+.+++|++||+-+
T Consensus 113 ~~~l~~l~~~~--~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEI--KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCch--hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999 89999999999999999999985321 35888999999999753
No 72
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=88.08 E-value=8.5 Score=37.47 Aligned_cols=64 Identities=17% Similarity=0.349 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhc----chhhHHHHHHHHhhhhhheeehhhhhHHH
Q 009016 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMYSIYCAWTYVGWLGLLL 351 (546)
Q Consensus 288 ~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l----~h~r~~~~i~~~y~vy~~~~~~gWlg~~l 351 (546)
.++|.+++--+++.+-|.+|+.....+++|++--+ .|+|=.--++..|++|++..-+.++=.++
T Consensus 60 ~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~~p~~~ 127 (186)
T PF09605_consen 60 AFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPYLPIWF 127 (186)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455655556678889889988888888875433 56666666888999999987755555544
No 73
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=87.61 E-value=0.17 Score=53.18 Aligned_cols=49 Identities=27% Similarity=0.718 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHh--------hhhhHH
Q 009016 259 SVIAMVGMFKFLMVLVVAALV-----AFFIGFALALVVVALSGTILLWLY--------GSFWTT 309 (546)
Q Consensus 259 s~~sm~~~~~~l~~l~~a~~~-----~~~~g~~~~~~iv~l~gi~ilW~y--------~~fw~t 309 (546)
|=....|++++.+.+.++.+. +.|+|+..-+|++-| ++..|+| ++||+.
T Consensus 78 CPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lL--aL~vW~Ym~lLr~~GAs~Wti 139 (381)
T PF05297_consen 78 CPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLL--ALGVWFYMWLLRELGASFWTI 139 (381)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHH
Confidence 444455666655555544432 345555544443322 3344444 467763
No 74
>PRK10263 DNA translocase FtsK; Provisional
Probab=84.98 E-value=9.7 Score=47.28 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=4.7
Q ss_pred hhHHHHHHHHh
Q 009016 306 FWTTFFVIFLG 316 (546)
Q Consensus 306 fw~t~~~~i~g 316 (546)
+|+.+++++.|
T Consensus 170 llLIGLiLlTg 180 (1355)
T PRK10263 170 VWAAGLTLFTG 180 (1355)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 75
>PRK10263 DNA translocase FtsK; Provisional
Probab=84.30 E-value=6.8 Score=48.57 Aligned_cols=10 Identities=40% Similarity=0.046 Sum_probs=3.9
Q ss_pred HHHHHHhhhh
Q 009016 297 TILLWLYGSF 306 (546)
Q Consensus 297 i~ilW~y~~f 306 (546)
-++.++.|.+
T Consensus 152 ~lL~~LfG~v 161 (1355)
T PRK10263 152 TTLQPLLHSS 161 (1355)
T ss_pred HHHHHHHhHH
Confidence 3334444433
No 76
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=84.09 E-value=1.9 Score=40.26 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=36.3
Q ss_pred CcccccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 009016 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 497 (546)
Q Consensus 441 DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSD 497 (546)
.-.+||||++ ..+.++|.+.|.+|-..-+|++... .-.=.+|..|.|.|..
T Consensus 59 EA~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 59 EARQILNVKE--ELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHH
Confidence 4478999999 8999999999999999999998742 3344577778877753
No 77
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=80.88 E-value=4.7 Score=35.01 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009016 268 KFLMVLVVAALVAFFIGFALALVVVALSGTI 298 (546)
Q Consensus 268 ~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ 298 (546)
.+++.+.++++++.++|.....+++|+++.+
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l 41 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLLLYL 41 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455566777777777777776666665443
No 78
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=80.11 E-value=32 Score=40.29 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHh
Q 009016 268 KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG---SFWTTFFVIFLG 316 (546)
Q Consensus 268 ~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~---~fw~t~~~~i~g 316 (546)
+++++.....++...++...+|+...++.+.++-+++ ++|++.+.++-|
T Consensus 336 ~l~p~a~~~~l~~~lv~~r~~i~~s~~~~i~~~~~~~~~~~~~~~~~~l~s~ 387 (700)
T COG1480 336 LLVPPALGPMLLILLVFLRIAIFSSSMIAIALLYLFGGSYNSEIALIALLSS 387 (700)
T ss_pred hccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4445555555666666777777777777777777776 567766666653
No 79
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=78.30 E-value=21 Score=32.96 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcchhh
Q 009016 290 VVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER 326 (546)
Q Consensus 290 ~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~h~r 326 (546)
.++++++++++|+.+. +.+-+..+..+.+..+-|+=
T Consensus 100 ~~~~~~~~~~l~~~~~-~~~l~~~l~~~~~lvl~HA~ 135 (153)
T PF03208_consen 100 LALLIVSILLLFFTSA-GLTLFWSLGASVLLVLLHAS 135 (153)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 3555566666776555 33344444444445555543
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.02 E-value=11 Score=35.82 Aligned_cols=9 Identities=33% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHHHhhh
Q 009016 310 FFVIFLGGL 318 (546)
Q Consensus 310 ~~~~i~gg~ 318 (546)
|++++.+|+
T Consensus 49 g~vL~~~g~ 57 (191)
T PF04156_consen 49 GVVLLSLGL 57 (191)
T ss_pred HHHHHHHHH
Confidence 344444443
No 81
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=75.53 E-value=2.9 Score=43.42 Aligned_cols=54 Identities=30% Similarity=0.348 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCC----CHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 009016 454 VDVSILKREYRKKAMLVHPDKNMG----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (546)
Q Consensus 454 AS~eEIKKAYRKLAlk~HPDKn~~----~~eA~E~Fk~IneAYeVLSDP~kRa~YD~e 507 (546)
++..+|..+|+..++..|||+... ....++.|++|.+||++|.+..+|..+|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 577899999999999999998731 224567899999999999986665566653
No 82
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=75.13 E-value=19 Score=40.81 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHhh
Q 009016 247 TSFFSVIWCSILSVIAMVGM---FK-FLMVLVVAALVAFFIGF 285 (546)
Q Consensus 247 ~~~~~i~w~~~~s~~sm~~~---~~-~l~~l~~a~~~~~~~g~ 285 (546)
.++.+++++.+..+++..+. .| +++++.++++++.|+-+
T Consensus 51 ~s~~~~~~~~~~~~~~l~~~~~~~k~~~~~l~~~sa~~~Yf~~ 93 (545)
T PRK11598 51 ASMPVVAFSVINIVFTLLSFPWLRRPLACLFILVGAAAQYFMM 93 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666666643 33 34455555555555433
No 83
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=72.34 E-value=2.4 Score=33.99 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=12.9
Q ss_pred cccCceEEeeeccCCc
Q 009016 524 SQKVWIYVYVCVCVCV 539 (546)
Q Consensus 524 ~~~~gvf~~~CRCg~c 539 (546)
++..+.|+|+||||+-
T Consensus 11 ~~~~~~~~y~CRCG~~ 26 (55)
T PF05207_consen 11 DEEEGVYSYPCRCGGE 26 (55)
T ss_dssp ETTTTEEEEEETTSSE
T ss_pred cCCCCEEEEcCCCCCE
Confidence 3456789999999985
No 84
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=72.32 E-value=52 Score=32.24 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhh----hcchhhHHHHHHHHhhhhh-heeehhhh
Q 009016 289 LVVVALSGTILLWLYGSFWTTFFVIFLGGLAF----KFTHERLALFITTMYSIYC-AWTYVGWL 347 (546)
Q Consensus 289 ~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f----~l~h~r~~~~i~~~y~vy~-~~~~~gWl 347 (546)
++|.|++--+++.+-|.+|......+++|++- ...++|=..-.+..|.+++ .+.-+.++
T Consensus 63 ~~i~~~i~gl~~~~~G~~~~~~~~~ii~gliaeli~~~g~Yks~~~~~ia~~~~~~~~~~g~~~ 126 (189)
T TIGR02185 63 IFIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIASTGGYKNKRKVTIAYVLFFLLVAMGPIL 126 (189)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556678888898777777766532 2345554456677787876 44444444
No 85
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=72.02 E-value=77 Score=35.00 Aligned_cols=20 Identities=20% Similarity=0.595 Sum_probs=10.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHh
Q 009016 282 FIGFALALVVVALSGTILLWLY 303 (546)
Q Consensus 282 ~~g~~~~~~iv~l~gi~ilW~y 303 (546)
..++|.|++++-. +..+|.|
T Consensus 139 l~~~~g~~~~~p~--~~l~~~~ 158 (495)
T PRK11644 139 LLTLTGGLTLAPT--CLLFWHY 158 (495)
T ss_pred HHHHhchHHHHHH--HHHHHHH
Confidence 3344444444433 4567877
No 86
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=71.31 E-value=1e+02 Score=29.88 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHhhhh-hhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 009016 225 LLSMLWLDC-TIRGIDSFMRMGTTSFFSVIWCSILSVIAM 263 (546)
Q Consensus 225 l~~~~w~dc-~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm 263 (546)
+.+..|.-| ..+.-..-.++.--..|.+.....++.+..
T Consensus 51 l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~ 90 (212)
T cd06181 51 LGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILS 90 (212)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 445445555666556666666555555433
No 87
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=71.14 E-value=16 Score=37.24 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 009016 479 EKAVEAFKKLQNAYEVLF 496 (546)
Q Consensus 479 ~eA~E~Fk~IneAYeVLS 496 (546)
+.-...++.+.++.+.+.
T Consensus 239 ~~l~~~l~~l~~~l~~~~ 256 (284)
T PF12805_consen 239 NRLKRALEALEESLEFLR 256 (284)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334455666666655543
No 88
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=69.79 E-value=1.2e+02 Score=33.00 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=17.7
Q ss_pred HHHHHhhhhhheeehhhhhHHHh
Q 009016 330 FITTMYSIYCAWTYVGWLGLLLA 352 (546)
Q Consensus 330 ~i~~~y~vy~~~~~~gWlg~~ls 352 (546)
.+....+++--.+|+||+|++++
T Consensus 205 ~~l~~~~L~lT~SRg~wl~l~~~ 227 (425)
T TIGR00947 205 LGVNALCLLFTYSRGGWLGLLAA 227 (425)
T ss_pred HHHHHHHHHHhcchhhHHHHHHH
Confidence 44566788888999999987654
No 89
>COG4709 Predicted membrane protein [Function unknown]
Probab=69.06 E-value=66 Score=32.39 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=14.5
Q ss_pred hhhhhhcchhhHHHHHHHHHHHH
Q 009016 238 IDSFMRMGTTSFFSVIWCSILSV 260 (546)
Q Consensus 238 ~~s~~~~g~~~~~~i~w~~~~s~ 260 (546)
+..+++||.-+++.++|..+.-+
T Consensus 82 ii~~~~L~~~~v~i~Lpl~~~vi 104 (195)
T COG4709 82 IIALIGLGLLAVIIGLPLLIGVI 104 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777655433
No 90
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=68.27 E-value=17 Score=33.53 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHhhhhhhcchhhHHHHHHHHhhhhhhe
Q 009016 286 ALALVVVALSGTILLWLYGSFWTT-FFVIFLGGLAFKFTHERLALFITTMYSIYCAW 341 (546)
Q Consensus 286 ~~~~~iv~l~gi~ilW~y~~fw~t-~~~~i~gg~~f~l~h~r~~~~i~~~y~vy~~~ 341 (546)
+--+++++++.++.+|.|.+.+.. .--+.+++.-+..++.-.++.+.++..+|+..
T Consensus 58 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (153)
T PF03208_consen 58 TNPFFLLVLLLVVALWAFIYKSRKENDPIVIGGRKISPRQVLLALLIVSILLLFFTS 114 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhccCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 334445555667777888888875 23344556566666666666666666666644
No 91
>KOG4800 consensus Neuronal membrane glycoprotein/Myelin proteolipid protein [Function unknown]
Probab=66.87 E-value=23 Score=36.43 Aligned_cols=91 Identities=18% Similarity=0.406 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH---------HHhhh
Q 009016 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVI---------FLGGL 318 (546)
Q Consensus 248 ~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~---------i~gg~ 318 (546)
-+..|=|-+..++.+++|+++..+ -++...+++|+..|+.. .||+|+-.. +.|+.
T Consensus 57 tv~ii~~~F~~~~~~wI~ifqyvf----~~iaa~f~~yG~~il~e------------gF~ttgA~r~~~g~~k~r~cGr~ 120 (248)
T KOG4800|consen 57 TVLIIEQYFSINIVSWICIFQYVF----YGIAAFFFLYGILILAE------------GFYTTGAVRKLYGDFKTRMCGRC 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHhh------------hhhhhhhHHHHHhhhhceecCcc
Confidence 356677889999999999998654 45666778886666655 467777765 33332
Q ss_pred hhhcchhhHHHHHHHHhhhhhheeehhhhhHHHhhhhhhhhHHHHHHHHhhhh
Q 009016 319 AFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKV 371 (546)
Q Consensus 319 ~f~l~h~r~~~~i~~~y~vy~~~~~~gWlg~~ls~nlsFls~DiL~~fLq~~~ 371 (546)
. . ..++...|+. -+.|+++ +.|..--+..||.-...
T Consensus 121 V---s----~~f~~lTy~l-----~f~W~~I-----~~f~~v~v~iy~~fw~~ 156 (248)
T KOG4800|consen 121 V---S----GVFVGLTYLL-----AFVWLLI-----FGFSAVPVFIYFNFWTT 156 (248)
T ss_pred h---h----hhhhHHHHHH-----HHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 0 0 0222223331 1368888 34777777777766444
No 92
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=65.03 E-value=2e+02 Score=30.89 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhh--h-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009016 216 LGHFAKIMLLLSMLWLDCTIR--G-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVV 292 (546)
Q Consensus 216 ~~~~~~~~ll~~~~w~dc~~r--g-~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv 292 (546)
++-++.+++.++..|+|-.+- + +..+...|+.+.=.|+=...=|++++.++++=++..++..+..+| +|.++=.
T Consensus 11 l~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi~~val~~assq~---sPR~l~~ 87 (371)
T PF10011_consen 11 LYAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQF---SPRLLRN 87 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHH
Confidence 344566777777777775543 1 445556666555555544555566666666666666666555554 4544410
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhhhhhcc----hhhHHHHHHHHhhhhhheeehhhhhHH
Q 009016 293 ALSGTILLWLYGSFWTTFFVIFLGGLAFKFT----HERLALFITTMYSIYCAWTYVGWLGLL 350 (546)
Q Consensus 293 ~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~----h~r~~~~i~~~y~vy~~~~~~gWlg~~ 350 (546)
=+===..-+-.|.|--|.+.-+++.....-. -.++++.++.++++.|+-.-+-|..-+
T Consensus 88 f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i 149 (371)
T PF10011_consen 88 FMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHI 149 (371)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000011111111111111111111112 348899999999999998887777643
No 93
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=62.87 E-value=1e+02 Score=32.16 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=38.1
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH--------HHHhhhHH-HHHHHHHH---HHHH
Q 009016 239 DSFMRMGTTSFFSVIWCSILSVIAMVGM------FKFLMVLVVAALVA--------FFIGFALA-LVVVALSG---TILL 300 (546)
Q Consensus 239 ~s~~~~g~~~~~~i~w~~~~s~~sm~~~------~~~l~~l~~a~~~~--------~~~g~~~~-~~iv~l~g---i~il 300 (546)
-.+.+++....++++|..|..+....=- -.+++.-++|++.- .|+++-+. ..+-|-+| ++++
T Consensus 186 ~~~~~~~~~~~~l~~~~~f~~ly~~lP~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv~~~~~y~~~YGalgsvi~lml 265 (303)
T COG1295 186 LILLRLRLLVSLLLLTLGFFLLYRFLPNVRVLKWRDVLPGALLAAILFELGKYLFGYYLSNFANYSSTYGALGSVIILLL 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3445556666566666666555432211 11233333333332 33333332 22333333 5567
Q ss_pred HHhhhhhHHHHHHHHhhhhhhc
Q 009016 301 WLYGSFWTTFFVIFLGGLAFKF 322 (546)
Q Consensus 301 W~y~~fw~t~~~~i~gg~~f~l 322 (546)
|+| ++++++++|+..-..
T Consensus 266 w~y----~~~~I~l~Gae~~a~ 283 (303)
T COG1295 266 WLY----ISALIILLGAELNAT 283 (303)
T ss_pred HHH----HHHHHHHHhHHHHHH
Confidence 766 457788888854433
No 94
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=61.83 E-value=16 Score=33.41 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHHHHHcCCh
Q 009016 453 NVDVSILKREYRKKAMLVHPDKNMGNEK----AVEAFKKLQNAYEVLFDS 498 (546)
Q Consensus 453 ~AS~eEIKKAYRKLAlk~HPDKn~~~~e----A~E~Fk~IneAYeVLSDP 498 (546)
..+..+++.+.|..-+++|||.....|+ -++.++.++.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999998766554 234677777766666654
No 95
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=61.68 E-value=70 Score=36.16 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=8.6
Q ss_pred hHHHHHHHHhhhh
Q 009016 500 KRKAYDDELRREE 512 (546)
Q Consensus 500 kRa~YD~eL~~ee 512 (546)
.+..||+.....+
T Consensus 402 ~~n~YdnsI~ytD 414 (522)
T PRK09598 402 LINAYDNTIFYND 414 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 3567888776643
No 96
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=58.28 E-value=1.7e+02 Score=27.79 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhc----chhhHHHHHHHHh
Q 009016 265 GMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMY 335 (546)
Q Consensus 265 ~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l----~h~r~~~~i~~~y 335 (546)
...|+.|...++.++..++|...|++...++.+++.=+.++-....+..++||.+-.. -+.|-.++.+.++
T Consensus 62 ~~~~~~P~a~~~~l~~~l~~~~~ai~~~~~~sl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~R~~~i~ag~~ 136 (194)
T PF07698_consen 62 YFPYLIPVAAAAMLLTILIDPRLAILASLFLSLLASLLFGFDFEFFLYSLVSGIVAIFSVRRIRSRSDIIKAGLL 136 (194)
T ss_pred hhhhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999999999999988777777666655555555566666553333 4555544444443
No 97
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=56.11 E-value=86 Score=27.52 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 009016 246 TTSFFSVIWCSILSVIAMV 264 (546)
Q Consensus 246 ~~~~~~i~w~~~~s~~sm~ 264 (546)
.|.||-.+|+...-++.-.
T Consensus 41 ~Af~f~~~w~l~r~mw~~~ 59 (108)
T PF10947_consen 41 WAFFFGPLWLLYRKMWLYA 59 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888999988888554
No 98
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=55.57 E-value=2.1e+02 Score=29.42 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHhhhhhh-cchhhHHHHHHHHhhhhhheeehhhhhHHHhhhhh
Q 009016 303 YGSFWTTFFVIFLGGLAFK-FTHERLALFITTMYSIYCAWTYVGWLGLLLALNLS 356 (546)
Q Consensus 303 y~~fw~t~~~~i~gg~~f~-l~h~r~~~~i~~~y~vy~~~~~~gWlg~~ls~nls 356 (546)
-..++..+.+++++-+.|- +++.+-... .-++|+|+++++|.+
T Consensus 129 ~~dYg~~Gvlli~~~y~~~~~r~~~~~~~-----------~~~~l~~~~~~ln~~ 172 (224)
T TIGR02755 129 GTSYGIAGLLMLAGALRLYRVRDTEERLA-----------LFACLLLLVPALNLR 172 (224)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhccHHHHH-----------HHHHHHHHHHHhccc
Confidence 3445556777777777553 222222111 224778888888873
No 99
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.05 E-value=2.6e+02 Score=32.19 Aligned_cols=184 Identities=23% Similarity=0.284 Sum_probs=99.0
Q ss_pred cccccccch---hhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCch----------hHHHHhhhhhHHh--
Q 009016 138 KTGLGWSLN---RVHLKNMMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPM----------LMTNIYNAHDYVS-- 202 (546)
Q Consensus 138 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~w~~~~~~~----------~~~~~~~~~~~~~-- 202 (546)
-+|+.+++| +|.+++..-+.+.-.|+++|.-=...+-++-|....|..|++- ++.+.+.+-|-..
T Consensus 267 vsgl~yspDC~v~l~l~ntkg~~~vl~n~aVr~tll~~~~~~~~~~~Ll~q~~~~sps~v~rlSf~~i~mqa~mD~~Lal 346 (636)
T KOG0828|consen 267 VSGLVYSPDCFVPLTLNNTKGNVEVLYNKAVRYTLLYIFIVLSQIFLLLRQMRINSPSHVQRLSFLTIAMQAGMDAYLAL 346 (636)
T ss_pred ccCcccCCCcCcceeeeccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHH
Confidence 355667777 8888999999999999999987666666666666666654432 4444444444321
Q ss_pred ------hhhhhhh-HHHHHHHHHHHHH----HHHHHHHhhhh-------hhhhhhh----------hhhcchhhHHHHHH
Q 009016 203 ------RKVQQVY-PVALNHLGHFAKI----MLLLSMLWLDC-------TIRGIDS----------FMRMGTTSFFSVIW 254 (546)
Q Consensus 203 ------~~~~~~~-p~v~~~~~~~~~~----~ll~~~~w~dc-------~~rg~~s----------~~~~g~~~~~~i~w 254 (546)
..||..| |.|..+.++|--. |.-|+..|+-- +.||--+ ++.. -.++ |
T Consensus 347 l~lta~~vve~lylpfvtaAF~~fV~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~~~~~n~~r~~~~~~-e~s~----~ 421 (636)
T KOG0828|consen 347 LFLTANAVVESLYLPFVTAAFFKFVVFSIFEMRYLLSIWKVQNSNMPPPATRPSTSNSSNNNTRQSNASN-ENSP----W 421 (636)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccccCcccccccc-cCCc----c
Confidence 2345544 7788877766432 23345556621 3344322 1111 0111 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhhhhhhcchhhHHHHHHH
Q 009016 255 CSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVI-FLGGLAFKFTHERLALFITT 333 (546)
Q Consensus 255 ~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~-i~gg~~f~l~h~r~~~~i~~ 333 (546)
...+ -.+++++++..+|.+-..||-.-..-+.. -+++.||-+|||--.+- ++-|-.=+--|-.++|=+|.
T Consensus 422 g~l~-----grf~fm~lv~~~~~l~s~~wp~q~r~yf~----~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIlG~Tv 492 (636)
T KOG0828|consen 422 GILL-----GRFLFMYLVVCIASLYSAFWPVQFRNYFI----PILIFMYYSFWIPQIVANVVRGDSRKPLHWYYILGMTV 492 (636)
T ss_pred hhhH-----HhHHHHHHHHHHHHhhccccHHHHHHHHH----HHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhhhHhH
Confidence 2221 23444455555555544444433333333 23466888999965542 22233333345555555544
Q ss_pred Hh
Q 009016 334 MY 335 (546)
Q Consensus 334 ~y 335 (546)
..
T Consensus 493 ~R 494 (636)
T KOG0828|consen 493 TR 494 (636)
T ss_pred Hh
Confidence 43
No 100
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=54.72 E-value=1.8e+02 Score=26.85 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 009016 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGG 317 (546)
Q Consensus 248 ~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg 317 (546)
.+++-+++.++++.-+..=+.+....--+.....++|-+.-.+++|...+-. ....|+.+.++++-|
T Consensus 33 ~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~~~---~~~~~i~g~~~~~~G 99 (136)
T PF08507_consen 33 SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCLGQ---SILSIIIGLLLFLVG 99 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH
Confidence 3444444444444433333323334444555556666666666666544433 333344444444444
No 101
>PF13446 RPT: A repeated domain in UCH-protein
Probab=54.24 E-value=20 Score=28.59 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=24.1
Q ss_pred CCcccccccccCCCCCHHHHHHHHHHHHH
Q 009016 440 TDHYSALGLSRFENVDVSILKREYRKKAM 468 (546)
Q Consensus 440 ~DyYeILGL~~~~~AS~eEIKKAYRKLAl 468 (546)
.+.|+.||+++ +.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~--~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDE--DTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCC--CCCHHHHHHHHHHHHH
Confidence 35699999998 8999999999998887
No 102
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=53.97 E-value=2.8e+02 Score=28.98 Aligned_cols=102 Identities=13% Similarity=-0.014 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009016 214 NHLGHFAKIMLLLSMLWLDCTIRGI----------DSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI 283 (546)
Q Consensus 214 ~~~~~~~~~~ll~~~~w~dc~~rg~----------~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~ 283 (546)
.|+-.+|++..=++.+ +.|| .-..||.-.++.+-+=-.+ +.+.+.-..++..|.++..+...+
T Consensus 58 ~~l~~iGRlAfPiFaf-----VeGfNla~hT~~r~kY~~RL~ifAlIseipf~l--~~~~~~~~NI~fTLalgl~~l~~~ 130 (248)
T PRK13706 58 EWMFLAGRGAFPLFAL-----VWGLNLSRHAHIRQPAINRLWGWGIIAQFAYYL--AGFPWYEGNILFAFAVAAQVLTWC 130 (248)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhccccchHHHHHHHHHHHHHHHHHHHHH--HhcccccCcHHHHHHHHHHHHHHH
Confidence 4677788888777765 8888 3456665554443210000 011222224444555554444444
Q ss_pred hhhHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHhhhhhhc
Q 009016 284 GFALALVVVALSGTILLW---LYGSFWTTFFVIFLGGLAFKF 322 (546)
Q Consensus 284 g~~~~~~iv~l~gi~ilW---~y~~fw~t~~~~i~gg~~f~l 322 (546)
-.....+.++++.+.++| +-...+..+.++|++-+.|-.
T Consensus 131 e~~~~~~~~~~il~~~l~~~~~~~DYg~~gvl~il~fy~~~~ 172 (248)
T PRK13706 131 ETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLAVSHRLYR 172 (248)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 332111111111112222 335466668888888886633
No 103
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=52.83 E-value=1.5e+02 Score=35.60 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=5.8
Q ss_pred eeehhhhhH
Q 009016 341 WTYVGWLGL 349 (546)
Q Consensus 341 ~~~~gWlg~ 349 (546)
|..+||+|.
T Consensus 361 rlFigWFGp 369 (810)
T TIGR00844 361 AMFIGHFGP 369 (810)
T ss_pred HHHheeecc
Confidence 445678774
No 104
>PF13994 PgaD: PgaD-like protein
Probab=52.58 E-value=56 Score=30.37 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=16.0
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q 009016 243 RMGTTSFFSVIWCSILSVIAM 263 (546)
Q Consensus 243 ~~g~~~~~~i~w~~~~s~~sm 263 (546)
|+....+-++.|+.|+.++..
T Consensus 14 r~~~~~lT~~~W~~~~yL~~p 34 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWRP 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777888899888776654
No 105
>PLN02922 prenyltransferase
Probab=51.76 E-value=45 Score=35.21 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=34.4
Q ss_pred hhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhh
Q 009016 230 WLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI-GFALALVVVALSGTILLWLYG 304 (546)
Q Consensus 230 w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~-g~~~~~~iv~l~gi~ilW~y~ 304 (546)
+.| ..||.|..-|-|+.-+.- |--.+..+..+++.+++.+++.... .-.+.++++|++|+++-|+|-
T Consensus 73 y~D-~~~G~D~~~~~~~~~~~~-------s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt 140 (315)
T PLN02922 73 AYD-ADTGVDKNKKESVVNLVG-------SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ 140 (315)
T ss_pred hhH-hccCcCcccCCCCCCccc-------CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 344 579999877766433321 2222222222222222222222211 112567788999999999985
No 106
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=51.25 E-value=73 Score=31.21 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhh
Q 009016 282 FIGFALALVVVALSGTILLWLYG 304 (546)
Q Consensus 282 ~~g~~~~~~iv~l~gi~ilW~y~ 304 (546)
-.+++.+-.++|+..+++.|.|.
T Consensus 115 ~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 115 SLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred cchhhHHHHHHHHHHHHHHHhee
Confidence 46777888889999999999987
No 107
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=49.08 E-value=67 Score=30.65 Aligned_cols=15 Identities=0% Similarity=-0.057 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 009016 261 IAMVGMFKFLMVLVV 275 (546)
Q Consensus 261 ~sm~~~~~~l~~l~~ 275 (546)
...+.++|+||.++.
T Consensus 75 lkaa~lvYllPLl~l 89 (154)
T PRK10862 75 LRSALLVYMTPLVGL 89 (154)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667787776644
No 108
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=48.03 E-value=40 Score=34.87 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009016 206 QQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGF 285 (546)
Q Consensus 206 ~~~~p~v~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~ 285 (546)
+---|++..|++..|-++.-+++. .++|+-- +--++|.+...|-..=.++.-++.-+|+
T Consensus 23 ~~gDg~~fQw~~~~~i~~~g~~v~----~~~~~p~-----------------f~p~amlgG~lW~~gN~~~vpii~~iGL 81 (254)
T PF07857_consen 23 DTGDGFFFQWVMCSGIFLVGLVVN----LILGFPP-----------------FYPWAMLGGALWATGNILVVPIIKTIGL 81 (254)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHH----HhcCCCc-----------------ceeHHHhhhhhhhcCceeehhHhhhhhh
Confidence 333588899999888765332211 1233311 2346777777777777777888899999
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 009016 286 ALALVVVALSGTILLWLYGSF 306 (546)
Q Consensus 286 ~~~~~iv~l~gi~ilW~y~~f 306 (546)
..|++|-+.+-+++=|..+-|
T Consensus 82 glg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 82 GLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999888876
No 109
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=47.85 E-value=92 Score=28.78 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009016 251 SVIWCSILSVIAMVGMFKFLMVLVVAAL 278 (546)
Q Consensus 251 ~i~w~~~~s~~sm~~~~~~l~~l~~a~~ 278 (546)
+|-|..+++.+|..+..-..+.+++.+.
T Consensus 61 li~~ai~~~~~s~ll~~l~i~~lf~~~~ 88 (130)
T PF11026_consen 61 LIRRAITLATLSALLVCLVILLLFLSAL 88 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555444444444333
No 110
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=47.84 E-value=30 Score=35.34 Aligned_cols=30 Identities=17% Similarity=0.496 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 009016 271 MVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (546)
Q Consensus 271 ~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~ 304 (546)
+++++.+++++|+++ .||=++--+|+|+.+
T Consensus 142 lS~~~lgll~~~~~l----aivRlilf~i~w~~~ 171 (224)
T PF03839_consen 142 LSVGALGLLGLFFAL----AIVRLILFLITWFFT 171 (224)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 344444444444433 333333344556553
No 111
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=47.30 E-value=1.7e+02 Score=26.37 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=10.2
Q ss_pred hhhheeehhhhhHHHhh
Q 009016 337 IYCAWTYVGWLGLLLAL 353 (546)
Q Consensus 337 vy~~~~~~gWlg~~ls~ 353 (546)
-|+--..++|.|.++.+
T Consensus 148 ~~gwSf~la~~a~~~~l 164 (172)
T PF13903_consen 148 SYGWSFWLAWVAFILLL 164 (172)
T ss_pred EECHHHHHHHHHHHHHH
Confidence 45555566777766543
No 112
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=47.24 E-value=32 Score=36.70 Aligned_cols=17 Identities=24% Similarity=0.800 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 009016 248 SFFSVIWCSILSVIAMV 264 (546)
Q Consensus 248 ~~~~i~w~~~~s~~sm~ 264 (546)
-||+++||-++|-..|+
T Consensus 72 I~yivlw~~l~Stl~l~ 88 (308)
T PF14800_consen 72 IFYIVLWANLYSTLQLF 88 (308)
T ss_pred HHHHHHHHHHHccchhh
Confidence 46899999999976665
No 113
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.20 E-value=39 Score=36.81 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh----hhhHH
Q 009016 249 FFSVIWCSILSVIAMVG--MFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG----SFWTT 309 (546)
Q Consensus 249 ~~~i~w~~~~s~~sm~~--~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~----~fw~t 309 (546)
+++++=.|++=+|-+.+ .+|-+.+ |++|++++ .+.|.||=+|-..|+|+.- .||+.
T Consensus 198 vl~tlaivLFPLWP~~mR~gvyY~si-g~~gfl~~----IlvLaIvRlILF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMRQGVYYLSI-GAGGFLAF----ILVLAIVRLILFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHhcccCcHHHhcceeeeec-chhHHHHH----HHHHHHHHHHHHHHHHHHhCCCCceEec
Confidence 44445455555554443 2232222 44444443 3455566666666666542 36653
No 114
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=46.09 E-value=41 Score=33.92 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 009016 210 PVALNHLGHFAKIMLL 225 (546)
Q Consensus 210 p~v~~~~~~~~~~~ll 225 (546)
....+|+.+++.++|+
T Consensus 179 n~~~tW~lR~~G~llm 194 (248)
T PF07787_consen 179 NNTLTWILRFIGWLLM 194 (248)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455666666555443
No 115
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=45.64 E-value=3e+02 Score=26.89 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhhhhhhcchhhHHHHHHHHhhhhhheeehhhhhHHHhhhhhhhhHHHH
Q 009016 306 FWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDAL 363 (546)
Q Consensus 306 fw~t~~~~i~gg~~f~l~h~r~~~~i~~~y~vy~~~~~~gWlg~~ls~nlsFls~DiL 363 (546)
+|.+...+.+.+.++.+..+|.++.+. -+++++-.-+.-.+.++--+|++..-+++
T Consensus 114 ~~~~~~~~~l~~~~l~l~~~k~~~I~~--ts~~Ga~~i~~giD~f~~~~l~~~~~~~~ 169 (210)
T PF13886_consen 114 FWVLFLCLALVFGLLTLKFQKPFLIVS--TSFFGAYAIVLGIDYFVGAGLKYFWLNLW 169 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHhHHHhcCcHHHHHHHHH
Confidence 455554444455567778888655554 45555555555555555555554333333
No 116
>PHA03239 envelope glycoprotein M; Provisional
Probab=45.64 E-value=82 Score=35.17 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---------Hh-hhh-----hHHH
Q 009016 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW---------LY-GSF-----WTTF 310 (546)
Q Consensus 246 ~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW---------~y-~~f-----w~t~ 310 (546)
.++|++-.|-..++.+.+..++=++..+++=.++.+|+-..+|-.+=.|+|..||| .| .-| |.++
T Consensus 254 gNsF~v~~~~~v~~ai~~F~vL~iiyliv~E~vL~~Yv~vl~G~~lG~lia~~iL~~aa~~Y~~~~Y~~v~v~a~~l~~~ 333 (429)
T PHA03239 254 ALHFGLDIPKATSGALSMFIVLGIIYLMMAELTVAHYVHVLIGPHLGMIIACAIAGTAAHAYADRLYDEIMIASPKLIQG 333 (429)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhHHHhhhhhcccchHHHH
Confidence 36888899999999999999888888888889999998888888887888888888 22 222 5666
Q ss_pred HHHHHhh
Q 009016 311 FVIFLGG 317 (546)
Q Consensus 311 ~~~i~gg 317 (546)
.-+++|.
T Consensus 334 v~~~Lav 340 (429)
T PHA03239 334 AAGILAA 340 (429)
T ss_pred HHHHHHH
Confidence 6666666
No 117
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=45.49 E-value=39 Score=33.59 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 009016 453 NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 496 (546)
Q Consensus 453 ~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLS 496 (546)
+|+.|||++|+.++..+|--| ++.-.+|..||+.+-
T Consensus 3 ~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHH
Confidence 899999999999999999333 345567899998765
No 118
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=45.16 E-value=1e+02 Score=28.50 Aligned_cols=54 Identities=24% Similarity=0.390 Sum_probs=34.1
Q ss_pred hhcchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHhh
Q 009016 242 MRMGTTSFF--SVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI--------GFALALVVVALSGTILLWLYG 304 (546)
Q Consensus 242 ~~~g~~~~~--~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~--------g~~~~~~iv~l~gi~ilW~y~ 304 (546)
+=.|++.+| +-.|=+|+.+ +++.++++++.+.+ -...++.++++|+.+.+|+-|
T Consensus 44 l~YG~nTLfFfLYTWPFFLAL---------mPvsVl~Gi~l~~ll~g~l~~s~~~t~l~V~~lFwllF~~L~G 107 (107)
T PF12084_consen 44 LVYGSNTLFFFLYTWPFFLAL---------MPVSVLIGIALSSLLRGKLLWSLLATGLAVGCLFWLLFSWLSG 107 (107)
T ss_pred hhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHcCCcEeeehhhHHHHHHHHHHHHHHHHcC
Confidence 445665544 4578888775 34455555555543 234566788888888888754
No 119
>PRK10726 hypothetical protein; Provisional
Probab=45.05 E-value=1.1e+02 Score=28.24 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=34.7
Q ss_pred hhcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 009016 242 MRMGTTS--FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (546)
Q Consensus 242 ~~~g~~~--~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~ 304 (546)
+=.|++. ||+-.|=+|+.+.-.+-++=+.+..-.-+=+ .+.-...++.++++|+.+.+|+-|
T Consensus 41 l~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l-~~s~l~t~l~V~~lFwllF~~L~G 104 (105)
T PRK10726 41 LIYGSNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKL-LYSILFTLLTVGCLFWLLFSWLLG 104 (105)
T ss_pred HHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345554 5566788888765443333332222222222 233445667788999998888754
No 120
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=44.97 E-value=1.1e+02 Score=32.36 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 009016 288 ALVVVALSGTILLWL 302 (546)
Q Consensus 288 ~~~iv~l~gi~ilW~ 302 (546)
++++..+.+++.+++
T Consensus 141 ~~~~~~~~~~~~~~~ 155 (366)
T PRK10245 141 GLVLMVVSCLVTLEL 155 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333344443
No 121
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=44.95 E-value=64 Score=33.49 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009016 288 ALVVVALSGTILLWLYG 304 (546)
Q Consensus 288 ~~~iv~l~gi~ilW~y~ 304 (546)
.++++|++|+++.|.|-
T Consensus 110 ~~l~lg~~~~~~~~~Yt 126 (284)
T TIGR00751 110 WFIALGALCIAAAITYT 126 (284)
T ss_pred HHHHHHHHHHHHhHhhc
Confidence 46789999999999995
No 122
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=44.52 E-value=3.6e+02 Score=33.61 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHH
Q 009016 210 PVALNHLGHFAKIMLLLSML-----WLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIA 262 (546)
Q Consensus 210 p~v~~~~~~~~~~~ll~~~~-----w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~s 262 (546)
|.+..|++.+-.++.+++.+ |.--.+|+|....=++... +.++|-.+|-+.+
T Consensus 11 p~~~~~~~~~~~~~~l~~~v~p~~~~~~~~~~~~~~~~~~~~~~-~sl~~g~~Ll~lA 67 (1094)
T PRK02983 11 PAAAGWTVGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPD-TSLAWAFVLALLA 67 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhcChhhhCCCc-hHHHHHHHHHHHH
Confidence 66677777776666666544 4444455553332222222 4555554544443
No 123
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=43.47 E-value=34 Score=31.79 Aligned_cols=46 Identities=26% Similarity=0.654 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHhhhhhhcchhhHHHHHHHHhhhhhheeehhhhhHH
Q 009016 286 ALALVVVALSGTILLWLYGSFW-----TTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLL 350 (546)
Q Consensus 286 ~~~~~iv~l~gi~ilW~y~~fw-----~t~~~~i~gg~~f~l~h~r~~~~i~~~y~vy~~~~~~gWlg~~ 350 (546)
|.|++++ +.|+++|.. |-|| +.++++++|. +-.+-++-+| .|.|.+
T Consensus 13 ~~al~li-f~g~~vmy~-gi~f~~~~~im~ifmllG~----------------L~~l~S~~VY-fwIGml 63 (114)
T PF11023_consen 13 TFALSLI-FIGMIVMYI-GIFFKASPIIMVIFMLLGL----------------LAILASTAVY-FWIGML 63 (114)
T ss_pred HHHHHHH-HHHHHHHhh-hhhhcccHHHHHHHHHHHH----------------HHHHHHHHHH-HHhhhh
No 124
>PRK10490 sensor protein KdpD; Provisional
Probab=43.35 E-value=84 Score=37.54 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 009016 265 GMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (546)
Q Consensus 265 ~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~ 304 (546)
.|+|+|.++++| .+.|+.||++- +++++++.|+|+
T Consensus 429 ~mlyll~Vll~A----~~~G~~pai~a-avls~l~~nfFF 463 (895)
T PRK10490 429 VMLYLLGVVVVA----LFYGRWPSVVA-TVINVASFDLFF 463 (895)
T ss_pred HHHHHHHHHHHH----HHhchHHHHHH-HHHHHHHHHhee
Confidence 345555444433 33599998765 677777777664
No 125
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=43.27 E-value=4e+02 Score=27.99 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=38.3
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCchhHHHHhhhhhHHhhhhhhhhHHHHHH
Q 009016 155 EKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNH 215 (546)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~ 215 (546)
.|-|.-..++....=-+.++++.++.+-=+=|.++.+.- -+-.+.-.+.-.||+-++-
T Consensus 62 ~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kf---i~ifigdlirlnWP~FsrL 119 (269)
T KOG4453|consen 62 LKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKF---IHIFIGDLIRLNWPIFSRL 119 (269)
T ss_pred hhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHH---HHHHHhHHHHhccHHHHHH
Confidence 345666677777777888899999887666555551111 1234566778889987743
No 126
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=43.26 E-value=71 Score=33.18 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009016 287 LALVVVALSGTILLWLYG 304 (546)
Q Consensus 287 ~~~~iv~l~gi~ilW~y~ 304 (546)
.-++++|++|+++-|.|-
T Consensus 106 ~~~l~lg~~g~~~~~~Yt 123 (285)
T TIGR02235 106 ITVLALVGLCCFLGYLYQ 123 (285)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 446789999999999994
No 127
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=42.77 E-value=1.5e+02 Score=31.34 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHh-hhhhhhhhhhhhhcchhh
Q 009016 216 LGHFAKIMLLLSMLW-LDCTIRGIDSFMRMGTTS 248 (546)
Q Consensus 216 ~~~~~~~~ll~~~~w-~dc~~rg~~s~~~~g~~~ 248 (546)
.+-.+.+++|++... .+-.+.|-.+.+++|+-+
T Consensus 68 ~~~~~~l~lL~l~~~~~g~~v~Ga~rWi~lG~~s 101 (358)
T PF01098_consen 68 ILYLGSLILLLLVLFPFGTEVNGARRWIRLGGFS 101 (358)
T ss_pred HhhHHHHHHHHHHHcccccccCCceEEEEeeeec
Confidence 344567778888878 899999999999999644
No 128
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=42.49 E-value=80 Score=33.27 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009016 287 LALVVVALSGTILLWLYG 304 (546)
Q Consensus 287 ~~~~iv~l~gi~ilW~y~ 304 (546)
+-++++|++|+++-|+|-
T Consensus 119 ~~~l~ig~~g~~~~~~YT 136 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLYQ 136 (304)
T ss_pred HHHHHHHHHHHHHhhecc
Confidence 456789999999999993
No 129
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=42.18 E-value=8.4 Score=40.98 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhheeehhhhhHHHhhh--hhhhhHHHHHHHHh
Q 009016 327 LALFITTMYSIYCAWTYVGWLGLLLALN--LSFVSSDALIFFLK 368 (546)
Q Consensus 327 ~~~~i~~~y~vy~~~~~~gWlg~~ls~n--lsFls~DiL~~fLq 368 (546)
+|.+++.+.+|..+-.+-+|+-+++-+= +=||.--|+.|.=.
T Consensus 144 LAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~ 187 (381)
T PF05297_consen 144 LAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHD 187 (381)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555666666677777778887765321 23777777777654
No 130
>PRK09546 zntB zinc transporter; Reviewed
Probab=41.07 E-value=22 Score=36.86 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHH-----H-HHhhhhhHHHHHHHHhh
Q 009016 287 LALVVVALSGTIL-----L-WLYGSFWTTFFVIFLGG 317 (546)
Q Consensus 287 ~~~~iv~l~gi~i-----l-W~y~~fw~t~~~~i~gg 317 (546)
|--||.|++|+=+ + |-||++++.++.+++++
T Consensus 276 PlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~ 312 (324)
T PRK09546 276 PTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIG 312 (324)
T ss_pred HHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHH
Confidence 6677888887532 2 77888766655555444
No 131
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=40.86 E-value=1.2e+02 Score=28.62 Aligned_cols=43 Identities=19% Similarity=0.471 Sum_probs=25.5
Q ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh
Q 009016 277 ALVAFFIGF-ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLA 319 (546)
Q Consensus 277 ~~~~~~~g~-~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~ 319 (546)
.++.++-|= .-.|-++++++|-++||+|.-=.--...++.|..
T Consensus 61 NIvd~lTGpig~~iA~LAVI~vG~swmfGrldl~~a~~Vv~GI~ 104 (120)
T PRK13857 61 NICTFILGPFGQSLAVLGIVAIGISWMFGRASLGLVAGVVGGIV 104 (120)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 344445443 3344488889999999999753333344444433
No 132
>PRK11383 hypothetical protein; Provisional
Probab=40.76 E-value=3e+02 Score=26.77 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------------HHhhhhhHHH
Q 009016 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILL---------------WLYGSFWTTF 310 (546)
Q Consensus 246 ~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~il---------------W~y~~fw~t~ 310 (546)
|.+|..+-|..++. |++-.++.|-=|...--==||-.++|+.|+|+.+.+ =.|+--|+ +
T Consensus 9 t~af~~~sw~al~~-----g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~-a 82 (145)
T PRK11383 9 SPAFSIVSWIALVG-----GIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLT-V 82 (145)
T ss_pred cHHHHHHHHHHHHH-----HHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHH-H
Confidence 66788888876643 333333444444433333478888999999988763 45677777 4
Q ss_pred HHHHHhhhhhhc------chhhHHHHHHHHhhhhhh
Q 009016 311 FVIFLGGLAFKF------THERLALFITTMYSIYCA 340 (546)
Q Consensus 311 ~~~i~gg~~f~l------~h~r~~~~i~~~y~vy~~ 340 (546)
+++-+|.++.-| -+|+..-++...+++|++
T Consensus 83 ~l~~i~LL~iGLwNA~l~lsEKGfY~~af~lsLFga 118 (145)
T PRK11383 83 FIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGA 118 (145)
T ss_pred HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHH
Confidence 444444444433 344444444444444443
No 133
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=40.52 E-value=5e+02 Score=29.96 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=29.0
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009016 242 MRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVV 291 (546)
Q Consensus 242 ~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~i 291 (546)
.-+.-+.++..+|.+.+..+- ..+..++.++++.+++++|.++.-++++
T Consensus 47 ~~~~~~~~~~~~~l~~~~~~~-~~~k~~~~~l~l~sa~asy~~~~y~i~~ 95 (555)
T COG2194 47 FSFLLALVFAFLLLLLLLSFP-RLLKPLAGVLSLVSAAASYFAYFYGIII 95 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444444555543333332 2444555667778888888888888875
No 134
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.34 E-value=2.7e+02 Score=32.98 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhc--
Q 009016 250 FSVIWCSILSVIAMVGMFK-----FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF-- 322 (546)
Q Consensus 250 ~~i~w~~~~s~~sm~~~~~-----~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l-- 322 (546)
|+|+|..++.+=.|.++=| +-|.|..+-=...|=|+.+.||+|.|-...=|-.|..+=+.-++|++.-|.++-
T Consensus 33 ~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~ 112 (697)
T PF09726_consen 33 FLLVWALVLLADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYV 112 (697)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q ss_pred -------chhhHHHHHHHHhhhhhheee
Q 009016 323 -------THERLALFITTMYSIYCAWTY 343 (546)
Q Consensus 323 -------~h~r~~~~i~~~y~vy~~~~~ 343 (546)
--.-+.|-++.+|.=+.+|.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 140 (697)
T PF09726_consen 113 WHTDRGICLPTVSLWILFVYVEASVRLK 140 (697)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHhhc
No 135
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=39.42 E-value=1.3e+02 Score=30.48 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 009016 255 CSILSVIAMVGMFK 268 (546)
Q Consensus 255 ~~~~s~~sm~~~~~ 268 (546)
-+|+.+++.+|++.
T Consensus 16 G~~f~ligaIGLlR 29 (197)
T PRK12585 16 GGLLSILAAIGVIR 29 (197)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444555555543
No 136
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=39.19 E-value=1.7e+02 Score=30.80 Aligned_cols=42 Identities=24% Similarity=0.573 Sum_probs=31.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH--------------------HHHHhhhhhHHHHHHHHhhh
Q 009016 277 ALVAFFIGFALALVVVALSGTI--------------------LLWLYGSFWTTFFVIFLGGL 318 (546)
Q Consensus 277 ~~~~~~~g~~~~~~iv~l~gi~--------------------ilW~y~~fw~t~~~~i~gg~ 318 (546)
-+...++|+..|++.-|+=||+ ++|-.||+..|...|++...
T Consensus 204 ~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i 265 (267)
T PF07672_consen 204 FAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI 265 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677888888888887776 47888888888888887653
No 137
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=38.92 E-value=7e+02 Score=30.62 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=8.2
Q ss_pred CCCCCCCCcccccccch
Q 009016 111 GDSTDNISSRETCGVRI 127 (546)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (546)
|||....++.....+..
T Consensus 775 GDG~ND~~mlk~AdVGI 791 (1057)
T TIGR01652 775 GDGANDVSMIQEADVGV 791 (1057)
T ss_pred eCCCccHHHHhhcCeee
Confidence 45544455555544444
No 138
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=38.68 E-value=78 Score=26.92 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 009016 276 AALVAFFIGFALALVVVALSGTILLWL 302 (546)
Q Consensus 276 a~~~~~~~g~~~~~~iv~l~gi~ilW~ 302 (546)
++++....|...+...++++|.++||.
T Consensus 51 ~gl~llv~G~~~~~~~~~v~G~~v~~~ 77 (82)
T PF11239_consen 51 VGLALLVAGVVLSQPPLGVAGFVVMVA 77 (82)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444445544555566666665553
No 139
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=38.08 E-value=1.5e+02 Score=29.17 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 009016 266 MFKFLMVLVVAALVAFFIGFALALV 290 (546)
Q Consensus 266 ~~~~l~~l~~a~~~~~~~g~~~~~~ 290 (546)
..++++++|+...++.|+|.-.++-
T Consensus 52 ~~~ili~~G~v~~~v~flGc~Ga~~ 76 (237)
T KOG3882|consen 52 PAYILIAVGGVVFLVGFLGCCGALR 76 (237)
T ss_pred chhhhhhhhHHHHHHHHhhhhhhHh
Confidence 3445555555555566666544443
No 140
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=37.69 E-value=4.6e+02 Score=26.77 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 009016 256 SILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY 303 (546)
Q Consensus 256 ~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y 303 (546)
.++|+++..|..++...+...++.+.-+.-|..-++.=++.+++.|..
T Consensus 229 ~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~ 276 (303)
T PF08449_consen 229 LLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHP 276 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 344444555554444445555555555555555555545555555543
No 141
>PRK11281 hypothetical protein; Provisional
Probab=37.43 E-value=5.3e+02 Score=32.35 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHH
Q 009016 221 KIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSV 260 (546)
Q Consensus 221 ~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~ 260 (546)
-+++++.-+|+.....|+-..+=.+...+ .+.|..|..+
T Consensus 557 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~ 595 (1113)
T PRK11281 557 TLIFLAVGLILLTDAFNQSELLWSWSLKL-ALFWLVFATC 595 (1113)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHHHHHHH
Confidence 44555666777777677766654333222 3455555333
No 142
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=37.38 E-value=1.7e+02 Score=32.52 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=33.2
Q ss_pred hh---hhhhhhhhhh--cchhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 009016 232 DC---TIRGIDSFMR--MGTTSFFSVIWCSIL----------SVIAMVGMFKFLMVLVVAAL 278 (546)
Q Consensus 232 dc---~~rg~~s~~~--~g~~~~~~i~w~~~~----------s~~sm~~~~~~l~~l~~a~~ 278 (546)
|| ..-|..++.| +|.+.||++|....+ .+=.-++.+|+++.+++...
T Consensus 64 ~C~~~~c~G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~ 125 (429)
T PF03348_consen 64 DCPSDSCVGYSAVYRVSFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVG 125 (429)
T ss_pred CcchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHhe
Confidence 66 5668888877 578888888887776 34445677787776665544
No 143
>COG5547 Small integral membrane protein [Function unknown]
Probab=36.72 E-value=62 Score=27.08 Aligned_cols=18 Identities=44% Similarity=0.552 Sum_probs=13.0
Q ss_pred HHHhhhhhHHHHHHHHhh
Q 009016 300 LWLYGSFWTTFFVIFLGG 317 (546)
Q Consensus 300 lW~y~~fw~t~~~~i~gg 317 (546)
|-+-..||=|-+++|+++
T Consensus 23 li~t~GfwKtilviil~~ 40 (62)
T COG5547 23 LILTFGFWKTILVIILIL 40 (62)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334558899988888766
No 144
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=36.22 E-value=5.6e+02 Score=28.15 Aligned_cols=79 Identities=13% Similarity=-0.028 Sum_probs=39.6
Q ss_pred hHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 009016 190 LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKF 269 (546)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~ 269 (546)
++....|.=-.....+=..=|.|.+|+++.+-|+.+.++.=-- .+=+-.++..--..++.++.-.-.++.+|++....
T Consensus 16 ~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p--~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~a~~a 93 (459)
T PF10337_consen 16 LKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPP--GRPRGKFLEAMILLLLGVCLGWAWGLLAMYIAVAA 93 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555677888888887777776655332 22222222222222333333333445555555555
Q ss_pred H
Q 009016 270 L 270 (546)
Q Consensus 270 l 270 (546)
+
T Consensus 94 R 94 (459)
T PF10337_consen 94 R 94 (459)
T ss_pred c
Confidence 5
No 145
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.22 E-value=77 Score=32.59 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHhhCCCC
Q 009016 455 DVSILKREYRKKAMLVHPDK 474 (546)
Q Consensus 455 S~eEIKKAYRKLAlk~HPDK 474 (546)
-.+++.+++..+....++..
T Consensus 154 ~~~~~~~~~~~~~~E~~g~~ 173 (301)
T PF14362_consen 154 LEKEIDRAQQEAQCEIFGTG 173 (301)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 45667777777777777764
No 146
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.92 E-value=2.1e+02 Score=29.39 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 009016 205 VQQVYPVALNHLGHFAKIMLLLSMLW 230 (546)
Q Consensus 205 ~~~~~p~v~~~~~~~~~~~ll~~~~w 230 (546)
+++ .|.=......+|.+|++...+|
T Consensus 5 L~~-~~~er~k~~~~G~~vl~ta~la 29 (301)
T PF14362_consen 5 LKR-SPAERNKYAGIGAAVLFTALLA 29 (301)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHHHHH
Confidence 345 6777777777777777766665
No 147
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=35.87 E-value=4.1e+02 Score=30.30 Aligned_cols=96 Identities=18% Similarity=0.357 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhhhh---hhhhhhhhcchh------------------hHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 009016 222 IMLLLSMLWLDCTI---RGIDSFMRMGTT------------------SFFSVIWCSILSVIAMVGMFKFLMVL------- 273 (546)
Q Consensus 222 ~~ll~~~~w~dc~~---rg~~s~~~~g~~------------------~~~~i~w~~~~s~~sm~~~~~~l~~l------- 273 (546)
=+.+++.+|.-|.+ =|-.+.+.|||+ -.|+-+|...+++.--.+.++.+...
T Consensus 45 svg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~ 124 (479)
T KOG1287|consen 45 SVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPF 124 (479)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Confidence 46788899999965 466677777764 46788888877654444333222221
Q ss_pred ------------HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHhhh
Q 009016 274 ------------VVAALVAFFIGFALALVVVALSG-TILLWLYGSFWTTFFVIFLGGL 318 (546)
Q Consensus 274 ------------~~a~~~~~~~g~~~~~~iv~l~g-i~ilW~y~~fw~t~~~~i~gg~ 318 (546)
.+|++...++.+.- .+.|..-. +-+.-.++.+-..+++++.|.+
T Consensus 125 fp~c~~p~~~~~lla~~~l~~lt~~n-~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~ 181 (479)
T KOG1287|consen 125 FPLCDVPRVASKLLAAALLVLLTLIN-SFSVKWATRVQIVFTIAKLLALLLIIITGLY 181 (479)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 23444444444332 22333222 2234455666666666666665
No 148
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=35.82 E-value=84 Score=38.15 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=26.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHH
Q 009016 244 MGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVA-FFIGFALALV 290 (546)
Q Consensus 244 ~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~-~~~g~~~~~~ 290 (546)
++-...|+||+..|-|+....-++..++.-.+.++.+ .++|++..++
T Consensus 886 ~a~~li~lvL~~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~ 933 (1051)
T TIGR00914 886 VTLLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSIS 933 (1051)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 3444566777777777766654444444333333333 3567776655
No 149
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=35.75 E-value=6.3e+02 Score=29.40 Aligned_cols=75 Identities=13% Similarity=0.299 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009016 210 PVALNHLGHFAKIML-LLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA 286 (546)
Q Consensus 210 p~v~~~~~~~~~~~l-l~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~ 286 (546)
|..+..+.-|+-..+ ++.++|.--..|=. +.-||=--+.+-|+|-.+.- ...+.++..++++.++.++..+.|++
T Consensus 166 ~~~~~~l~~~~i~~~~~l~v~~~~~~~K~~-gI~rL~G~s~~~I~~~~l~~-~~~~~~l~~l~~~i~~~~~~~~~~~~ 241 (679)
T TIGR01654 166 LNILVILALLLIVIFVLFLIYYLMINMKRV-AIYRLNGFSLRKILFRLFSK-NCTYLLISALLILLLSSFLLFIKGYT 241 (679)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 334444444444444 55566665555422 23344445566666665543 22333345555555566777777877
No 150
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.33 E-value=68 Score=29.16 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 009016 269 FLMVLVVAALVAFFIGFALALVVV 292 (546)
Q Consensus 269 ~l~~l~~a~~~~~~~g~~~~~~iv 292 (546)
.-+++.++|+|+|+.||..--|=+
T Consensus 28 ~q~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 28 QQLILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999987665544
No 151
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=35.08 E-value=3e+02 Score=32.44 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=7.4
Q ss_pred chhhHHHHHHHHhhhhh
Q 009016 323 THERLALFITTMYSIYC 339 (546)
Q Consensus 323 ~h~r~~~~i~~~y~vy~ 339 (546)
+++.+++...|++.+++
T Consensus 474 ~~Y~~a~~fiT~~vll~ 490 (701)
T TIGR01667 474 KNYGWATVFITLLVLLC 490 (701)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44555444444444333
No 152
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=35.04 E-value=1.2e+02 Score=35.72 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhh
Q 009016 286 ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAF 320 (546)
Q Consensus 286 ~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f 320 (546)
.+|-++|+++.++-.=.++-.|.-.+++++|+..|
T Consensus 109 af~tLliaiytmlg~~~~~~w~~~pllll~GalwY 143 (704)
T TIGR01666 109 AFGSLLVALYTMLGYIEVNVWFIQPVMLLCGTLWY 143 (704)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 34445555544433223333344666677777433
No 153
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=34.96 E-value=14 Score=36.37 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHH------HHHhhhhhH--HHHHHHHhhh
Q 009016 286 ALALVVVALSGTIL------LWLYGSFWT--TFFVIFLGGL 318 (546)
Q Consensus 286 ~~~~~iv~l~gi~i------lW~y~~fw~--t~~~~i~gg~ 318 (546)
.|.-||.|+||+=+ =|-||++|+ .++.+++++.
T Consensus 245 lPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 285 (292)
T PF01544_consen 245 LPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAIL 285 (292)
T ss_dssp HHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHHH
Confidence 67778888888722 266777766 4444444443
No 154
>TIGR02210 rodA_shape rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example.
Probab=34.87 E-value=5.9e+02 Score=27.15 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchhh
Q 009016 220 AKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (546)
Q Consensus 220 ~~~~ll~~~~w~dc~~rg~~s~~~~g~~~ 248 (546)
..++++++.....-.+.|-+.-+++|+.+
T Consensus 66 ~~~~ll~l~~~~g~~v~Ga~rWi~lg~~~ 94 (352)
T TIGR02210 66 LGLLLLVAVLLFGTTGKGAQRWIDLGFFR 94 (352)
T ss_pred HHHHHHHHHHHcCCCcCCceeeeecCCcc
Confidence 44555555555566678888888888754
No 155
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=34.36 E-value=4.3e+02 Score=27.28 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=39.6
Q ss_pred hhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHhhhHHHHHHHHHHHH
Q 009016 232 DCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVA----AL--VAFFIGFALALVVVALSGTI 298 (546)
Q Consensus 232 dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a----~~--~~~~~g~~~~~~iv~l~gi~ 298 (546)
-+.+.|+++ ++=|-.+-...|.+++-+.-=+.++++..-+.-. .+ .+.|.||..--+|+.++.-+
T Consensus 101 ~g~~~G~~g--~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~~ 171 (240)
T PF03878_consen 101 SGLILGLQG--RFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLASL 171 (240)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHHH
Confidence 356677776 6777777777777776666555555554443221 11 56688888777766654433
No 156
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.14 E-value=62 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHH
Q 009016 269 FLMVLVVAALVAFFIGFA-------LALVVVALSGTIL 299 (546)
Q Consensus 269 ~l~~l~~a~~~~~~~g~~-------~~~~iv~l~gi~i 299 (546)
.|+++|+.-+|++++.+. |.|-+|||.||++
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~iAlvGllGilv 41 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPAIALVGLLGILV 41 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 467888877777776653 5666888887764
No 157
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=34.04 E-value=2.6e+02 Score=25.07 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 009016 289 LVVVALSGTILLWLYGSFWTTFFVIFLGG 317 (546)
Q Consensus 289 ~~iv~l~gi~ilW~y~~fw~t~~~~i~gg 317 (546)
++++.+.+-+++.-|-.|++++++++++-
T Consensus 77 ~~~~~~~~y~~~~~~lGf~~at~~~~~~~ 105 (141)
T PF07331_consen 77 LVLGLLVLYVLLLEYLGFIIATFLFLFAF 105 (141)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444555666777666655544
No 158
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.96 E-value=21 Score=30.20 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=13.9
Q ss_pred ccccCceEEeeeccCCc
Q 009016 523 ASQKVWIYVYVCVCVCV 539 (546)
Q Consensus 523 ~~~~~gvf~~~CRCg~c 539 (546)
.+..++.|.|||+||--
T Consensus 14 ~~~e~~~y~yPCpCGDr 30 (67)
T KOG2923|consen 14 FDEENQTYYYPCPCGDR 30 (67)
T ss_pred eccCCCeEEcCCCCCCe
Confidence 45678999999999953
No 159
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=33.80 E-value=2.4e+02 Score=27.03 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHH
Q 009016 246 TTSFFSVIWCSIL 258 (546)
Q Consensus 246 ~~~~~~i~w~~~~ 258 (546)
+-.+....+.|++
T Consensus 15 ~~~l~~~~l~p~~ 27 (219)
T PF07264_consen 15 SPKLRRLSLIPLL 27 (219)
T ss_dssp STTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555544
No 160
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=33.68 E-value=2.7e+02 Score=28.83 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 009016 210 PVALNHLGHFAKIMLLLSMLWLDCT 234 (546)
Q Consensus 210 p~v~~~~~~~~~~~ll~~~~w~dc~ 234 (546)
+....-..|+|.++-+++.+|+|..
T Consensus 37 ~~~f~v~lhlGtllAvl~~fr~~i~ 61 (259)
T PF02673_consen 37 GLAFDVFLHLGTLLAVLIYFRKDIW 61 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999964
No 161
>PRK10160 taurine transporter subunit; Provisional
Probab=33.58 E-value=5.4e+02 Score=26.29 Aligned_cols=7 Identities=14% Similarity=0.619 Sum_probs=3.9
Q ss_pred hhhhhhH
Q 009016 204 KVQQVYP 210 (546)
Q Consensus 204 ~~~~~~p 210 (546)
++++-||
T Consensus 13 ~~~~~~~ 19 (275)
T PRK10160 13 RLKWRWP 19 (275)
T ss_pred chHhhcc
Confidence 4555665
No 162
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=33.37 E-value=6.7e+02 Score=27.32 Aligned_cols=17 Identities=35% Similarity=0.983 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhHHHHHHHHhh
Q 009016 297 TILLWLYGSFWTTFFVIFLGG 317 (546)
Q Consensus 297 i~ilW~y~~fw~t~~~~i~gg 317 (546)
++++|+|-+ .+++++|+
T Consensus 251 i~LlWlyls----~~I~L~Ga 267 (412)
T PRK04214 251 ILLLWIYLL----WVLVLLGA 267 (412)
T ss_pred HHHHHHHHH----HHHHHHHH
Confidence 566777754 34444554
No 163
>PRK01637 hypothetical protein; Reviewed
Probab=33.34 E-value=3.2e+02 Score=28.03 Aligned_cols=17 Identities=24% Similarity=0.960 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhHHHHHHHHhh
Q 009016 297 TILLWLYGSFWTTFFVIFLGG 317 (546)
Q Consensus 297 i~ilW~y~~fw~t~~~~i~gg 317 (546)
++++|+|- +++++++|+
T Consensus 244 ~lllWlyl----~~~ilL~Ga 260 (286)
T PRK01637 244 ILFVWVYL----SWCIVLLGA 260 (286)
T ss_pred HHHHHHHH----HHHHHHHHH
Confidence 45566543 355555555
No 164
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=1.5e+02 Score=33.52 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009016 218 HFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGT 297 (546)
Q Consensus 218 ~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi 297 (546)
.|-.+.-|.+.+=+.-.-=|+.-.++.||-+.=.|+|-..+.+ ++.++=-++++.|+-+.++.-.. +..+
T Consensus 21 ~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i---------~P~~~Ei~l~~vi~~~~~~~~f~-~~t~ 90 (497)
T COG5265 21 TFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNI---------LPTLVEISLVAVILWRVYGWWFA-LTTL 90 (497)
T ss_pred HHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHh---------hHHHHHHHHHHHHHHhhcccHHH-HHHH
Confidence 3444556677888888888999999999999888888766554 33333333444444444444432 2346
Q ss_pred HHHHHhhhhhHHHH
Q 009016 298 ILLWLYGSFWTTFF 311 (546)
Q Consensus 298 ~ilW~y~~fw~t~~ 311 (546)
+.+|+|..||+...
T Consensus 91 vtv~lY~~ftv~~s 104 (497)
T COG5265 91 VTVILYLLFTVIVS 104 (497)
T ss_pred HHHHHHHHhheeeh
Confidence 88999999998543
No 165
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.25 E-value=69 Score=31.52 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=24.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhh----hhhHH------HHHHHHhhhhhhcchhhHHHHHHHHhhhhhhe
Q 009016 281 FFIGFALALVVVALSGTILLWLYG----SFWTT------FFVIFLGGLAFKFTHERLALFITTMYSIYCAW 341 (546)
Q Consensus 281 ~~~g~~~~~~iv~l~gi~ilW~y~----~fw~t------~~~~i~gg~~f~l~h~r~~~~i~~~y~vy~~~ 341 (546)
..+++..+-+.+++|| + +||.- +.+++++++. .+++.-+ |..||.+|
T Consensus 27 ai~sl~~s~llI~lFg-------~~~~~nf~~NllGVil~~~~~~~~l~-~~k~~p~------m~Ev~YvW 83 (165)
T PF11286_consen 27 AILSLAFSQLLIALFG-------GESGGNFHWNLLGVILGLLLTSALLR-QLKTHPF------MTEVYYVW 83 (165)
T ss_pred HHHHHHHHHHHHHHcC-------CCCCCceeeeHHHHHHHHHHHHHHHH-HHccChH------HHHHHHHH
Confidence 3444555555566665 3 45432 3333333333 4455555 77777777
No 166
>PRK10794 cell wall shape-determining protein; Provisional
Probab=33.13 E-value=6.5e+02 Score=27.18 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchhh
Q 009016 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (546)
Q Consensus 219 ~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~ 248 (546)
+..+++|++.....-++.|=..-+++|+-+
T Consensus 80 ~~~~~lL~l~~~~g~~~~Ga~rWi~iG~~~ 109 (370)
T PRK10794 80 IICIILLVAVDAFGQISKGAQRWLDLGIVR 109 (370)
T ss_pred HHHHHHHHHHHhcCCCcCCcccceecCCcc
Confidence 455666677666777888888899999764
No 167
>COG1289 Predicted membrane protein [Function unknown]
Probab=33.08 E-value=1.6e+02 Score=33.87 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHhhhhh----hcchhhHHHHHHHHhhhhhhe
Q 009016 285 FALALVVVALSGTILLWLYGSFWTT-FFVIFLGGLAF----KFTHERLALFITTMYSIYCAW 341 (546)
Q Consensus 285 ~~~~~~iv~l~gi~ilW~y~~fw~t-~~~~i~gg~~f----~l~h~r~~~~i~~~y~vy~~~ 341 (546)
+..|.++-.++|.+++|+...-+.. .+++++++++| .+.+++++.+..++-..+|.-
T Consensus 406 ri~GTllg~~~g~~~l~~~~p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~~~ 467 (674)
T COG1289 406 RILGTLLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLVG 467 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 3445555556666666666665554 33333333333 346667666666665555554
No 168
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=32.98 E-value=1.1e+02 Score=31.13 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhHHH
Q 009016 272 VLVVAALVAFFIGFALAL 289 (546)
Q Consensus 272 ~l~~a~~~~~~~g~~~~~ 289 (546)
-+..+++++..+|-..++
T Consensus 67 H~lg~~l~~lllGp~~a~ 84 (230)
T PRK11909 67 HAVGGTLIAILLGPWAAV 84 (230)
T ss_pred hHHHHHHHHHHHhHHHHH
Confidence 344445555556644444
No 169
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.87 E-value=2e+02 Score=28.17 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=8.6
Q ss_pred Hhhhhhhhhhhhhhhc
Q 009016 229 LWLDCTIRGIDSFMRM 244 (546)
Q Consensus 229 ~w~dc~~rg~~s~~~~ 244 (546)
.+.-|.+.|+-.+..-
T Consensus 90 ~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3445666666555444
No 170
>PF07947 YhhN: YhhN-like protein; InterPro: IPR012506 The members of this family are similar to the hypothetical protein yhhN expressed by Escherichia coli (P37616 from SWISSPROT). Many of the members of this family are annotated as being possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. ; GO: 0016021 integral to membrane
Probab=32.54 E-value=4.4e+02 Score=24.95 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhhh--------HHHHHHHHhhhhhhc
Q 009016 291 VVALSGTILLWLYGSFW--------TTFFVIFLGGLAFKF 322 (546)
Q Consensus 291 iv~l~gi~ilW~y~~fw--------~t~~~~i~gg~~f~l 322 (546)
.|.+-+++|..|-..-+ .....+.+|+.+|.+
T Consensus 109 ~v~~Y~~~l~~m~~~A~~~~~~~~~~~~~~~~iGa~lF~i 148 (185)
T PF07947_consen 109 PVLVYALILSFMAWLAFSRYFSLSSKSSWLAAIGALLFLI 148 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 44445555554444333 346677777777766
No 171
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=32.39 E-value=1.3e+02 Score=31.62 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 009016 287 LALVVVALSGTILLWLYGS 305 (546)
Q Consensus 287 ~~~~iv~l~gi~ilW~y~~ 305 (546)
..++++|++|+++.|.|..
T Consensus 114 ~~~l~igl~g~~~~~~Yt~ 132 (317)
T PRK13387 114 WLLLVIGLICFAIGILYTG 132 (317)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 4467889999999999953
No 172
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=32.03 E-value=6.8e+02 Score=29.76 Aligned_cols=116 Identities=7% Similarity=-0.104 Sum_probs=0.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009016 200 YVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALV 279 (546)
Q Consensus 200 ~~~~~~~~~~p~v~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~ 279 (546)
.+..++.|.+.++....+..-..+++.+ ..-....-++++-...+....|.....+++=+.=....-.......+
T Consensus 617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~-----~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~ 691 (742)
T TIGR01299 617 LLMDKIGRLRMLAGSMVLSCISCFFLSF-----GNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNA 691 (742)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhc
Q 009016 280 AFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF 322 (546)
Q Consensus 280 ~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l 322 (546)
+.-+|-.+|-+++|. ++-.+.+.-|++.+.+.++|+++..+
T Consensus 692 ~~rlGaiigp~i~g~--L~~~~~~~pf~i~a~~lll~~ll~~~ 732 (742)
T TIGR01299 692 LCKAAAVLGILIFGS--FVGITKAAPILFASAALACGGLLALK 732 (742)
T ss_pred HHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHh
No 173
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=32.03 E-value=45 Score=30.57 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=16.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 009016 279 VAFFIGFALALVVVALSGTIL 299 (546)
Q Consensus 279 ~~~~~g~~~~~~iv~l~gi~i 299 (546)
--+|.||..|+.|+||+++++
T Consensus 78 tna~yGfviGl~i~aLlAlil 98 (108)
T COG4062 78 TNAFYGFVIGLGIMALLALIL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999987654
No 174
>PRK14397 membrane protein; Provisional
Probab=31.87 E-value=5.2e+02 Score=26.56 Aligned_cols=10 Identities=0% Similarity=-0.127 Sum_probs=4.5
Q ss_pred HHHHhhhhcc
Q 009016 364 IFFLKSKVNQ 373 (546)
Q Consensus 364 ~~fLq~~~ne 373 (546)
.-+++++|+.
T Consensus 181 ~RL~~G~E~k 190 (222)
T PRK14397 181 GRLARGEEKP 190 (222)
T ss_pred HHHHcCCcch
Confidence 3355544443
No 175
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=31.76 E-value=31 Score=35.25 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHH-----HH-HHHhhhhhHHHHHHHHhhh
Q 009016 286 ALALVVVALSGT-----IL-LWLYGSFWTTFFVIFLGGL 318 (546)
Q Consensus 286 ~~~~~iv~l~gi-----~i-lW~y~~fw~t~~~~i~gg~ 318 (546)
+|--+|.|++|+ +- =|-||++++.++.+++++.
T Consensus 269 lP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 269 IPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred HHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH
Confidence 455556666664 22 2888888887776666553
No 176
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=31.42 E-value=1.6e+02 Score=30.87 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009016 287 LALVVVALSGTILLWLYG 304 (546)
Q Consensus 287 ~~~~iv~l~gi~ilW~y~ 304 (546)
+.+++++++++++.|.|.
T Consensus 120 ~~~~~~~~~~~~lg~~Ys 137 (308)
T PRK12887 120 PWLLITVGISLLIGTAYS 137 (308)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456778888999999997
No 177
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=31.23 E-value=1.7e+02 Score=28.47 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHhhCCCCC
Q 009016 455 DVSILKREYRKKAMLVHPDKN 475 (546)
Q Consensus 455 S~eEIKKAYRKLAlk~HPDKn 475 (546)
+..++-..|..+.. ||.++
T Consensus 137 ~~~~l~~kY~~l~~--~~~~~ 155 (199)
T PF10112_consen 137 TAVKLLEKYAELES--QPVKS 155 (199)
T ss_pred HHHHHHHHHHHHHh--ccCCC
Confidence 46677777777766 67666
No 178
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=30.90 E-value=4.2e+02 Score=32.08 Aligned_cols=13 Identities=15% Similarity=0.674 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhhh
Q 009016 274 VVAALVAFFIGFA 286 (546)
Q Consensus 274 ~~a~~~~~~~g~~ 286 (546)
+++++++..+||.
T Consensus 213 ~~GiliG~vvG~l 225 (810)
T TIGR00844 213 IFGSILGCIIGYC 225 (810)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444433
No 179
>PRK09459 pspG phage shock protein G; Reviewed
Probab=30.35 E-value=3.5e+02 Score=23.74 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 009016 272 VLVVAALVAFFIGFALALVVVALSGTILLWLYGS 305 (546)
Q Consensus 272 ~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~ 305 (546)
.|.+++..+..+.+.|=+.+. ++..|+|-+
T Consensus 34 vM~l~Gm~~lviKLLPWLil~----~v~vW~~r~ 63 (76)
T PRK09459 34 VMFLGGMFALMIKLLPWLLLA----VVVVWVIRA 63 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 333444444444444444333 455677654
No 180
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=30.25 E-value=96 Score=33.08 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009016 288 ALVVVALSGTILLWLYG 304 (546)
Q Consensus 288 ~~~iv~l~gi~ilW~y~ 304 (546)
.++..+++|+++.|.|-
T Consensus 126 ~il~~~~~~l~l~~~YS 142 (331)
T PRK12392 126 VIISSILAGLFVAYIYS 142 (331)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 45566778888888884
No 181
>PRK09776 putative diguanylate cyclase; Provisional
Probab=30.07 E-value=3.3e+02 Score=32.26 Aligned_cols=9 Identities=0% Similarity=0.161 Sum_probs=5.3
Q ss_pred ccccccccc
Q 009016 442 HYSALGLSR 450 (546)
Q Consensus 442 yYeILGL~~ 450 (546)
+++++|.++
T Consensus 439 ~~~l~G~~~ 447 (1092)
T PRK09776 439 MFELYEIPP 447 (1092)
T ss_pred HHHHhCCCc
Confidence 455666665
No 182
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=29.94 E-value=4e+02 Score=25.02 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 009016 290 VVVALSGTILLWL 302 (546)
Q Consensus 290 ~iv~l~gi~ilW~ 302 (546)
++.|++.++++|.
T Consensus 73 l~~~vlP~~~l~~ 85 (156)
T PF08019_consen 73 LLLGVLPALLLWR 85 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 183
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=29.75 E-value=2.9e+02 Score=28.15 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 009016 288 ALVVVALSGTILLWLYGS 305 (546)
Q Consensus 288 ~~~iv~l~gi~ilW~y~~ 305 (546)
-++++|++|+++.|.|-.
T Consensus 114 ~~~~~~~~~~~~~~~Ys~ 131 (293)
T PRK06080 114 WLLLLGLLCIAAAILYTG 131 (293)
T ss_pred HHHHHHHHHHHHhhhhcC
Confidence 456778888999999953
No 184
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=29.72 E-value=8.4e+02 Score=29.22 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=6.4
Q ss_pred HHHHHHhhCCCC
Q 009016 463 YRKKAMLVHPDK 474 (546)
Q Consensus 463 YRKLAlk~HPDK 474 (546)
|.-.++.-.|+-
T Consensus 592 FY~kAke~~~~v 603 (700)
T COG1480 592 FYYKAKEENPNV 603 (700)
T ss_pred HHHHHHHhCCCC
Confidence 334456666663
No 185
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=29.33 E-value=1.3e+02 Score=34.44 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHH
Q 009016 247 TSFFSVIWCSILSVIAMVG------MFKFLMVLVVAALVAFFIGFALAL 289 (546)
Q Consensus 247 ~~~~~i~w~~~~s~~sm~~------~~~~l~~l~~a~~~~~~~g~~~~~ 289 (546)
.++.+++++++..+++..+ +..++++|.+.++++.|+-.+.|+
T Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~K~~~~~l~l~sa~~~Yf~~~ygv 97 (558)
T PRK11560 49 VVELAATVLVTFFLLRLLSLFGRRFWRVLASLLVLFSAAASYYMTFFNV 97 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5666777777766666665 333566666677777776555444
No 186
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=28.99 E-value=1.1e+02 Score=31.55 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=14.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHh--hhhhH
Q 009016 283 IGFALALVVVALSGTILLWLY--GSFWT 308 (546)
Q Consensus 283 ~g~~~~~~iv~l~gi~ilW~y--~~fw~ 308 (546)
+|+..++.||=++--+|+|+. ..||+
T Consensus 158 l~~~~~laivRlilF~i~~~~~g~~fWl 185 (232)
T TIGR00869 158 IGGFFAVAILRLILFVLTLIVVKPGIWI 185 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 344444555555556667765 35665
No 187
>PLN00012 chlorophyll synthetase; Provisional
Probab=28.82 E-value=3.3e+02 Score=29.74 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHh-------------hhhhH---HHHHHHHhhhhhhcch
Q 009016 266 MFKFLMVLVVAALVAFFIGFA-----LALVVVALSGTILLWLY-------------GSFWT---TFFVIFLGGLAFKFTH 324 (546)
Q Consensus 266 ~~~~l~~l~~a~~~~~~~g~~-----~~~~iv~l~gi~ilW~y-------------~~fw~---t~~~~i~gg~~f~l~h 324 (546)
+...+..+.++.+++.++.+. +-++++|++|+++.|.| |++.+ .+.+.+.+|.+..-.-
T Consensus 171 l~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~ 250 (375)
T PLN00012 171 ITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTL 250 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCC
Q ss_pred hhHHHHHHHHhhhhhh
Q 009016 325 ERLALFITTMYSIYCA 340 (546)
Q Consensus 325 ~r~~~~i~~~y~vy~~ 340 (546)
.-.++++...|.+.+.
T Consensus 251 s~~~illal~~~l~~l 266 (375)
T PLN00012 251 TPDVVVLTLLYSIAGL 266 (375)
T ss_pred CHHHHHHHHHHHHHHH
No 188
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=28.47 E-value=7.5e+02 Score=30.49 Aligned_cols=130 Identities=21% Similarity=0.287 Sum_probs=68.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 009016 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI- 283 (546)
Q Consensus 205 ~~~~~p~v~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~- 283 (546)
.++.||-+.+-.-.-...+++....|-=-. .+-+|+- |.++|..-||+.|.+|+.+++.....- -.-||.
T Consensus 70 ~~~~Fpq~r~RfR~~L~YI~~~~l~W~lYf------av~~rs~--fi~~~~~slc~lslv~~mf~~ft~~~l-Y~rhy~~ 140 (1318)
T KOG3618|consen 70 LERCFPQTRRRFRYALFYIGFACLLWSLYF------AVHMRSR--FIVMVAPSLCFLSLVCVMFFLFTFTKL-YARHYAW 140 (1318)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------eeccCce--eeeehHHHHHHHHHHHHHHHHHHHHHH-HHHHhhH
Confidence 455666666554444444555555552111 1233444 888999999999999987776543221 111111
Q ss_pred -hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcchhhHHHHHHHHhhhhhheeehhhhhHHHhhhhh
Q 009016 284 -GFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLS 356 (546)
Q Consensus 284 -g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~h~r~~~~i~~~y~vy~~~~~~gWlg~~ls~nls 356 (546)
.+.+.++|-|+ -+ +++---|..+|+---..||.-+-.+.+||-|-----|||+.+.+--|
T Consensus 141 TS~~~tlLvc~~---tL----------a~ltat~r~af~spvgsfa~c~evvlLiYTv~plPLyL~~~~gi~YS 201 (1318)
T KOG3618|consen 141 TSLALTLLVCAL---TL----------ANLTATARPAFLSPVGSFAMCIEVVLLIYTVMPLPLYLSLCLGIAYS 201 (1318)
T ss_pred HHHHHHHHHHHH---HH----------HHhhhccchhhhCchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 11111222211 11 11111222345444455666666777777777777788877765444
No 189
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=28.00 E-value=4.6e+02 Score=26.73 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhh
Q 009016 222 IMLLLSMLWLDCTIRGIDSFM 242 (546)
Q Consensus 222 ~~ll~~~~w~dc~~rg~~s~~ 242 (546)
++...-..|-|..=|++|...
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~ 66 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKM 66 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCC
Confidence 444444566666668888864
No 190
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=27.96 E-value=2.5e+02 Score=29.18 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=10.5
Q ss_pred hhhhhhhHHHHHHHHh
Q 009016 353 LNLSFVSSDALIFFLK 368 (546)
Q Consensus 353 ~nlsFls~DiL~~fLq 368 (546)
++..-.++.+|||+--
T Consensus 107 ~~~~~~~~~~Ln~~G~ 122 (254)
T PF07857_consen 107 LDPQVPSSPWLNYIGV 122 (254)
T ss_pred ccccccchhHHHHHHH
Confidence 4556677788887543
No 191
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.64 E-value=5.2e+02 Score=24.55 Aligned_cols=7 Identities=29% Similarity=1.080 Sum_probs=3.1
Q ss_pred hhhhhhh
Q 009016 230 WLDCTIR 236 (546)
Q Consensus 230 w~dc~~r 236 (546)
|.|+.+=
T Consensus 125 ~~~~~~a 131 (193)
T PF06738_consen 125 WIDMIVA 131 (193)
T ss_pred HHHHHHH
Confidence 4444443
No 192
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=27.38 E-value=1.8e+02 Score=24.81 Aligned_cols=28 Identities=14% Similarity=0.451 Sum_probs=17.1
Q ss_pred HHHHHh-hhHHHHHHHHHHHHHHHHhhhh
Q 009016 279 VAFFIG-FALALVVVALSGTILLWLYGSF 306 (546)
Q Consensus 279 ~~~~~g-~~~~~~iv~l~gi~ilW~y~~f 306 (546)
+...-| ....+.+++++..-++|+++..
T Consensus 46 ~~~l~gp~~~~i~~i~ii~~g~~~~~g~~ 74 (99)
T PF04956_consen 46 IDWLTGPIGKAIAIIAIIVAGIMMMFGRQ 74 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344445 5555666666666677777663
No 193
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=27.26 E-value=3.7e+02 Score=28.15 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=32.2
Q ss_pred HHHHHhhhhhheeehhhhhHHHhhhhhhhhHHHHHHHHhhhhcc
Q 009016 330 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQ 373 (546)
Q Consensus 330 ~i~~~y~vy~~~~~~gWlg~~ls~nlsFls~DiL~~fLq~~~ne 373 (546)
+++.+.++...-.-.|..|++++.=+.=+-..+++...+....+
T Consensus 304 p~~ilisll~g~~l~G~~G~ila~pl~~~~k~~~~~~~~~~~~~ 347 (355)
T COG0628 304 PLVILLSLLGGGSLFGFVGLILAPPLAAVLKVLLRAWLEEELLA 347 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666799999999988888888888877744433
No 194
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=27.24 E-value=2.7e+02 Score=28.60 Aligned_cols=12 Identities=33% Similarity=0.276 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 009016 250 FSVIWCSILSVI 261 (546)
Q Consensus 250 ~~i~w~~~~s~~ 261 (546)
|++++..|.|+.
T Consensus 157 ~lvl~~~fRs~~ 168 (333)
T PF03176_consen 157 FLVLLLVFRSVR 168 (333)
T ss_pred HhhhhhHHHHHH
Confidence 444555555543
No 195
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=27.24 E-value=1.2e+02 Score=33.70 Aligned_cols=53 Identities=23% Similarity=0.420 Sum_probs=32.6
Q ss_pred hhh-hhhhhhhhhc--chhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Q 009016 232 DCT-IRGIDSFMRM--GTTSFFSVIWCSILSVIA----------MVGMFKFLMVLVVAALVAFFIG 284 (546)
Q Consensus 232 dc~-~rg~~s~~~~--g~~~~~~i~w~~~~s~~s----------m~~~~~~l~~l~~a~~~~~~~g 284 (546)
||- .=|++.+.|+ |.++||+++=.-++.+.+ -.+.+|+++-+++....-++..
T Consensus 68 ~c~~~~gy~AVyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~ 133 (426)
T KOG2592|consen 68 DCGKLLGYKAVYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPN 133 (426)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCC
Confidence 676 6788888774 777777766544444332 2466777776666655444433
No 196
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=27.11 E-value=6.6e+02 Score=25.28 Aligned_cols=66 Identities=9% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhHHHHH
Q 009016 225 LLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMV------LVVAALVAFFIGFALALVV 291 (546)
Q Consensus 225 l~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~------l~~a~~~~~~~g~~~~~~i 291 (546)
+++-.|.....=|.. +++-|.......+|..++|+...+|++--..+ .....+.+.++++..|.|+
T Consensus 207 i~~Hk~~e~~~~~~~-l~~~~~~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~l 278 (317)
T PF02535_consen 207 IILHKIPEGFALGSI-LVKAGFSKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFL 278 (317)
T ss_pred HHHhHhHHHhhhhhh-hhhhccccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHH
Confidence 334455555444432 55667777777789999999999888665555 4445567777888888774
No 197
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=27.09 E-value=1.5e+02 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=11.5
Q ss_pred HhhhhhheeehhhhhHHHhh
Q 009016 334 MYSIYCAWTYVGWLGLLLAL 353 (546)
Q Consensus 334 ~y~vy~~~~~~gWlg~~ls~ 353 (546)
+...++.|+| ||.-.++|.
T Consensus 414 ~r~~~~~~~y-g~~~~~~s~ 432 (727)
T PRK11234 414 QRVIFVTGYY-GLTQGLLSV 432 (727)
T ss_pred HHHhhhhhhh-hHHHHhccc
Confidence 3444455555 887777765
No 198
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=26.92 E-value=3.3e+02 Score=23.10 Aligned_cols=43 Identities=21% Similarity=0.555 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009016 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTI 298 (546)
Q Consensus 249 ~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ 298 (546)
||-.+|=. .-.+-+++.++.-.+.++.++++.|++.+|+.=++
T Consensus 6 ~fk~iW~~-------~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l 48 (63)
T PF06341_consen 6 FFKTIWKY-------FDIILFILAMIFINITAFLINQIAGLISIGITLFL 48 (63)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566652 23344556666667778889999999888774333
No 199
>PHA03237 envelope glycoprotein M; Provisional
Probab=26.64 E-value=2.4e+02 Score=31.66 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 009016 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWL 302 (546)
Q Consensus 246 ~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~ 302 (546)
-++|++-.|-..+..+.+.+++=++..+++=.++.+|+-..+|-.+=.|+|..|||.
T Consensus 248 gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~rYv~vl~G~~lG~lia~~~l~~ 304 (424)
T PHA03237 248 ANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSRYVHVLPGPALGLLIAYGMLAV 304 (424)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 368888899999999998888888888888888888887777766666677777764
No 200
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=26.60 E-value=7.1e+02 Score=25.51 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 009016 218 HFAKIMLLLS 227 (546)
Q Consensus 218 ~~~~~~ll~~ 227 (546)
-+|.+++.+.
T Consensus 35 ~~g~l~~~~~ 44 (290)
T TIGR00776 35 TFGALILSIA 44 (290)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 201
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=1.5e+02 Score=30.72 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=27.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhc
Q 009016 280 AFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF 322 (546)
Q Consensus 280 ~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l 322 (546)
.+++||-.-=++|+. ++.|++..+.+.-++++.-|++++.
T Consensus 157 l~IlGYCLfPl~v~a---li~~~~~~l~~lr~vv~~~~~~WSs 196 (234)
T KOG2946|consen 157 LCILGYCLFPLVVAA---LIICLFRDLFFLRLVVTSIGLAWSS 196 (234)
T ss_pred hhhhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666544445543 5888888888888888888877763
No 202
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=26.04 E-value=4.9e+02 Score=30.84 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh---hhcchhhHHHHHHHHhhhhhhe
Q 009016 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLA---FKFTHERLALFITTMYSIYCAW 341 (546)
Q Consensus 288 ~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~---f~l~h~r~~~~i~~~y~vy~~~ 341 (546)
|-++=+++|++++|+.-+.|...+++++.|.+ |..+|+-++....|.+.+.|.-
T Consensus 434 GTllG~~lg~~ll~l~p~~~~~l~liv~~~~l~~~~~~~~Y~~a~~fiT~~vll~~~ 490 (704)
T TIGR01666 434 GTLLGVVIGSPLLYFNPSLELQLVLVVLTGVLFFAFRSNNYSFATFFITLLVLLCFN 490 (704)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33343445555666554544433333333333 2335666665555566665543
No 203
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.98 E-value=99 Score=31.78 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=17.6
Q ss_pred HHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHhh
Q 009016 433 VVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLV 470 (546)
Q Consensus 433 ierilk~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~ 470 (546)
+.++.....-|++.-=+........++.+.-+||-+++
T Consensus 147 v~RV~~~vPV~~i~vG~gegQVpL~kL~~~l~KLp~~l 184 (224)
T PF13829_consen 147 VARVVGNVPVHDIIVGNGEGQVPLRKLQKTLMKLPRNL 184 (224)
T ss_pred hccccCCCCeEEEEecCCCCceeHHHHHHHHHhCCccC
Confidence 44555555556543222111344555555555544443
No 204
>PRK01766 multidrug efflux protein; Reviewed
Probab=25.93 E-value=8.2e+02 Score=26.01 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=12.9
Q ss_pred hhHHhhhhhhhhHHHHHHHHH
Q 009016 198 HDYVSRKVQQVYPVALNHLGH 218 (546)
Q Consensus 198 ~~~~~~~~~~~~p~v~~~~~~ 218 (546)
++.+...+.-.+|+...-+..
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~ 255 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFE 255 (456)
T ss_pred HHHHHHHHHccchHHHHHHHH
Confidence 345566667777876655444
No 205
>PRK13591 ubiA prenyltransferase; Provisional
Probab=25.83 E-value=1.2e+02 Score=32.34 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhh
Q 009016 292 VALSGTILLWLYG 304 (546)
Q Consensus 292 v~l~gi~ilW~y~ 304 (546)
++++++++.|+|.
T Consensus 124 l~ll~~l~g~lYS 136 (307)
T PRK13591 124 LAFLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHhc
Confidence 3444444455544
No 206
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=25.66 E-value=1.5e+02 Score=30.04 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=27.6
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhh
Q 009016 445 ALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 500 (546)
Q Consensus 445 ILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~k 500 (546)
+|||.. .+++--|| +-+++ ++..|.|... ..+.-.|-.||.|.-+|- |..
T Consensus 100 ~lGLgN--AATPlGlK-AMeel-qeiN~~ks~A-s~ami~FLviNta~itLi-PtT 149 (206)
T COG2715 100 MLGLGN--AATPLGLK-AMEEL-QEINPNKSTA-SNAMIMFLVINTASITLI-PTT 149 (206)
T ss_pred hcCCCc--ccCchhHH-HHHHH-HHhCCCCCch-hhhhhhhheecccceeee-cHH
Confidence 567777 56665554 33333 4455665532 445556666666665555 544
No 207
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=24.99 E-value=8.2e+02 Score=25.69 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=18.4
Q ss_pred chhhhcCCCccccCCCCcCCCCccccCCC
Q 009016 84 PRREKQGTDTRRDLGQSVSSETSETIAGD 112 (546)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (546)
|..+....|+..||+..-.++- |++|
T Consensus 13 DEe~~lk~d~EIDLEKG~lpey---nSee 38 (247)
T PF03303_consen 13 DEEDELKTDHEIDLEKGPLPEY---NSEE 38 (247)
T ss_pred chhcccCCCCceecccCCCCcc---cCCC
Confidence 3344456688899998888887 5555
No 208
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=24.89 E-value=2.8e+02 Score=34.06 Aligned_cols=18 Identities=11% Similarity=0.488 Sum_probs=9.5
Q ss_pred HHHHHhhhhhHHHHHHHH
Q 009016 298 ILLWLYGSFWTTFFVIFL 315 (546)
Q Consensus 298 ~ilW~y~~fw~t~~~~i~ 315 (546)
+..++|-..|...+.||=
T Consensus 361 ~~~~iwLqlWppLfAIIN 378 (942)
T PRK13735 361 VFALMWLQSWPLLYAILN 378 (942)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555566665554443
No 209
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.86 E-value=2.3e+02 Score=29.62 Aligned_cols=64 Identities=27% Similarity=0.495 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcchhhHHH--HHHHHhhhh
Q 009016 268 KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLAL--FITTMYSIY 338 (546)
Q Consensus 268 ~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~h~r~~~--~i~~~y~vy 338 (546)
|-|++|++-+.+..++| .-+..=.-+.+..++|- -|..+-+ +++ +..++|.|+.+ ++...|.++
T Consensus 178 YcLLPlvvlS~v~i~~~-~~g~vg~il~~~~v~W~---t~aaS~l-fv~--al~~~~~rlLiaYp~~l~Y~~F 243 (249)
T KOG3103|consen 178 YCLLPLVVLSFVNIFVG-LQGTVGYILSALFVLWC---TYAASKL-FVS--ALSMENQRLLVAYPCALLYGVF 243 (249)
T ss_pred HHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHH---HHHHHHH-HHH--HhhccccchhhhhHHHHHHhhh
Confidence 55566666666666666 33333222333455664 2333333 333 67889998733 455555544
No 210
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=24.84 E-value=1.4e+03 Score=28.87 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCch-hHHHHhhhhhHHhhhhhhhhHHHHHHH-----------HHHHHHHHHHHHHhhhhhhhhhhhhh
Q 009016 175 TLKAAIELLERQSPM-LMTNIYNAHDYVSRKVQQVYPVALNHL-----------GHFAKIMLLLSMLWLDCTIRGIDSFM 242 (546)
Q Consensus 175 ~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~v~~~~-----------~~~~~~~ll~~~~w~dc~~rg~~s~~ 242 (546)
...|=-=||-+++|+ +-....-..+.....-.-.|.-...++ .-++-+++..+..|+- |.+..++
T Consensus 426 ~L~~~lFWv~s~~Pi~l~w~~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~l~~~lll~~~~~~~r---~~~~~~l 502 (1109)
T PRK10929 426 ATHRYLFWVADVSPISLSYPLEIAQDLRRLLSLDTFSQLGKASVMMLTSKETLLPLFGALLLVGFSISSR---RHYHAFL 502 (1109)
T ss_pred HHHHhhhccCCCCCCChHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 456667899999999 211111111111111122233333333 2233344555556754 4444444
Q ss_pred h-----cchh-------hHHHHHHHHHHHHH
Q 009016 243 R-----MGTT-------SFFSVIWCSILSVI 261 (546)
Q Consensus 243 ~-----~g~~-------~~~~i~w~~~~s~~ 261 (546)
+ .|.. .+..++|..++++-
T Consensus 503 ~~~~~~vg~v~~D~~~~T~~al~~t~l~alP 533 (1109)
T PRK10929 503 ERSSSRVGKVTQDHFSLTLRTVFWSILVASP 533 (1109)
T ss_pred HHHHHhcCCcccccccccHHHHHHHHHHHhH
Confidence 3 4432 45678888888763
No 211
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=24.76 E-value=4.4e+02 Score=27.01 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 009016 274 VVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLG 316 (546)
Q Consensus 274 ~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~g 316 (546)
.+-..+...+.-.|.++++.++..++.-.+..+|+.+++.+..
T Consensus 29 ~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~ 71 (334)
T PF04515_consen 29 AVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFS 71 (334)
T ss_pred HHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777888999999998888888888888877664443
No 212
>PRK10774 cell division protein FtsW; Provisional
Probab=24.48 E-value=9.4e+02 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.417 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchhh--------HHHHHHHH
Q 009016 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS--------FFSVIWCS 256 (546)
Q Consensus 219 ~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~--------~~~i~w~~ 256 (546)
+..+++|++..=..-.+-|-++-+++|+.+ +.+|+|..
T Consensus 106 ~~~l~llllv~~~g~~~~Ga~rWi~iG~~~~QPSE~~Ki~~il~lA 151 (404)
T PRK10774 106 LGSIIMLLIVLVVGSSVNGASRWIALGPLRIQPAELTKLSLFCYLA 151 (404)
T ss_pred HHHHHHHHHHHHcCCccCCcceEEEeCCccCChhHHHHHHHHHHHH
Confidence 344445544443566677888888898754 35555555
No 213
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=24.47 E-value=1.6e+02 Score=36.00 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHH
Q 009016 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAF-FIGFALALV 290 (546)
Q Consensus 248 ~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~-~~g~~~~~~ 290 (546)
.+|+||+..|-|+.....++..++.-.+.++.++ ++|+++.++
T Consensus 883 lv~lvL~~~f~s~~~pliI~~~IPls~~Ga~~~l~~~g~~l~~~ 926 (1049)
T PRK15127 883 VVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVY 926 (1049)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 4556677777775555444444443333333333 446666654
No 214
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=24.44 E-value=7.5e+02 Score=25.45 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=20.1
Q ss_pred HHHHHHhhhhhhhhhhhhhhcchhhHHHHHHH
Q 009016 224 LLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWC 255 (546)
Q Consensus 224 ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~ 255 (546)
++.+..+.=+--||+.+++.+.-+.+.++.+.
T Consensus 9 if~~lll~igg~~G~~sllsL~~n~~~i~~~~ 40 (244)
T PF07907_consen 9 IFILLLLLIGGKKGLRSLLSLIFNFLIIFFVL 40 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566789999988876655544443
No 215
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=24.37 E-value=8.2e+02 Score=25.46 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcchhhHHHHHHHHhhhhhheeeh
Q 009016 265 GMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYV 344 (546)
Q Consensus 265 ~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~h~r~~~~i~~~y~vy~~~~~~ 344 (546)
.+-++..-+.+-+++-.-+.-+.-.-...-+..++++....+.+..++..+-...|....++. ..+.+.|...-.
T Consensus 32 ~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~N~ 106 (385)
T PF03547_consen 32 GLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWR-----GVFVLAASFGNT 106 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----eEEEecccCCcc
Q ss_pred hhhhHHHhhhhh----------------hhhHHHHHHHHhhhhcccCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009016 345 GWLGLLLALNLS----------------FVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPG 408 (546)
Q Consensus 345 gWlg~~ls~nls----------------Fls~DiL~~fLq~~~ne~~~ssp~eqs~sss~~~~~fs~ess~~Ssses~ss 408 (546)
|.+|+.+...+- ++---+..+++....++...+.+++++..+.........+....... ....
T Consensus 107 ~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 185 (385)
T PF03547_consen 107 GFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSS-PSST 185 (385)
T ss_pred hhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCccc-cccc
Q ss_pred CCCCCCCCCCCCCCCCCCCCcHHHHH
Q 009016 409 LSADRSPGVPSTSGDDSEMTSEDEVV 434 (546)
Q Consensus 409 ~ss~~~~~~psts~~ds~~ts~eeie 434 (546)
+......+.......+...+..+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (385)
T PF03547_consen 186 EEEIDEDGSPSSTPSQSSASAPSSVS 211 (385)
T ss_pred ccccccCCcccccccccccccchhhc
No 216
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=24.26 E-value=1.8e+02 Score=28.57 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Q 009016 254 WCSILSVIAMVGMFKFLMVLVVAALVAFFIG--FALALVVVALSGTI 298 (546)
Q Consensus 254 w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g--~~~~~~iv~l~gi~ 298 (546)
|..-+.+ |+..||..+++++-+-|+-- ...++.+.++.+++
T Consensus 110 W~~s~~l----Gi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~ 152 (175)
T PF07856_consen 110 WRFSTVL----GIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPV 152 (175)
T ss_pred HHHHHHH----HHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHH
Confidence 7666655 88888888888888877777 66676766665543
No 217
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=24.09 E-value=4.7e+02 Score=24.99 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009016 266 MFKFLMVLVVAALVAFFIGFALALVVVALSGT 297 (546)
Q Consensus 266 ~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi 297 (546)
++|.++=+.+-..++..+|..+.++++-+.++
T Consensus 9 ~~~~~iEi~~~i~v~~~iG~~~tl~lvi~t~~ 40 (148)
T PRK11463 9 LLYPLIEIAVFIAVASVIGVGWTLLLVILTSV 40 (148)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444455556666666555554333333
No 218
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=23.97 E-value=2.7e+02 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 009016 270 LMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (546)
Q Consensus 270 l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW 301 (546)
++..+++...++-..+ ++++++++++++.+|
T Consensus 168 ~~l~gi~lGla~~~K~-~~~~~~~~~~~~~~~ 198 (245)
T PF02366_consen 168 LLLAGIALGLAILTKG-PGLLLVLPAGLLFLW 198 (245)
T ss_pred HHHHHHHHHHHHHhch-hHHHHHHHHHHHHHH
Confidence 3344444444444442 333333334444443
No 219
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=23.97 E-value=1.5e+02 Score=26.91 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 009016 268 KFLMVLVVAALVAFFI 283 (546)
Q Consensus 268 ~~l~~l~~a~~~~~~~ 283 (546)
+|+.++++++++.+..
T Consensus 48 ~Wl~Ilg~a~l~~~l~ 63 (100)
T PF10724_consen 48 FWLAILGVAALVGLLF 63 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666555544
No 220
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.95 E-value=2.5e+02 Score=28.18 Aligned_cols=32 Identities=25% Similarity=0.137 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009016 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAA 277 (546)
Q Consensus 246 ~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~ 277 (546)
.+=.+++.=+.++|++.==+.+-++++++++.
T Consensus 71 ~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w 102 (187)
T KOG3142|consen 71 VNYVIIVAILLFLSLITHPLSLIVLLALVAAW 102 (187)
T ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444555444434444444443333
No 221
>PLN00136 silicon transporter; Provisional
Probab=23.78 E-value=3e+02 Score=30.85 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=17.1
Q ss_pred ehhhhhHHHhhhhhhhhHHHHHHHHhhhhc
Q 009016 343 YVGWLGLLLALNLSFVSSDALIFFLKSKVN 372 (546)
Q Consensus 343 ~~gWlg~~ls~nlsFls~DiL~~fLq~~~n 372 (546)
..+|+..++| +|++|-..--++-.-+.
T Consensus 374 ~~~~~s~~lS---~~isNvp~~~~m~p~v~ 400 (482)
T PLN00136 374 VLSVIILLLS---NLASNVPTVLLMGDEVA 400 (482)
T ss_pred HHHHHHHHHH---HHhccHHHHHHHHHHHH
Confidence 3456666655 68888877776664443
No 222
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=23.71 E-value=4.4e+02 Score=31.13 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=25.0
Q ss_pred HHhhhhhHHHHHHHHhhhhhhc-----chhh---HHHHHHHHhhhhhheeehhhh
Q 009016 301 WLYGSFWTTFFVIFLGGLAFKF-----THER---LALFITTMYSIYCAWTYVGWL 347 (546)
Q Consensus 301 W~y~~fw~t~~~~i~gg~~f~l-----~h~r---~~~~i~~~y~vy~~~~~~gWl 347 (546)
+.+.+-|.....+++.++.|.+ ..+. ++-|+..+|.|..+-...-|.
T Consensus 76 ll~~~p~~~~~~l~~~tf~~~mlga~G~r~~~I~f~~L~~aiytml~~~~~~~w~ 130 (701)
T TIGR01667 76 LLFPKPWLFPFLLTLLTFGFILLGALGQRYATIAFASLLAAIYTMLGAGEVPVWF 130 (701)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHcCcccccHHH
Confidence 3455555555555555555544 3333 455666677776666544453
No 223
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=23.64 E-value=55 Score=29.32 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhh-------HHHHHHHHHHHH
Q 009016 270 LMVLVVAALVAFFIGFA-------LALVVVALSGTI 298 (546)
Q Consensus 270 l~~l~~a~~~~~~~g~~-------~~~~iv~l~gi~ 298 (546)
|++|++..+|+.++++. |.|-++||+||+
T Consensus 4 llSL~aG~lvG~iy~ll~v~sPAPP~iAl~GllGi~ 39 (90)
T PF07235_consen 4 LLSLGAGLLVGVIYSLLKVPSPAPPVIALVGLLGIL 39 (90)
T ss_pred eeehhhhhHHHHHHHHhcCCCCCCcHhHHHHHHHHh
Confidence 56677777777666653 344466665543
No 224
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.59 E-value=1.9e+02 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.493 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 009016 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFL 315 (546)
Q Consensus 269 ~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~ 315 (546)
+-.+|.+.++++++.||...-+-+ .++.|+..-..++++++
T Consensus 13 ~~~il~~~~iisfi~Gy~~q~~~~------~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYITQSFSY------TFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhee
No 225
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.56 E-value=1.7e+02 Score=31.09 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q 009016 263 MVGMFKFLMVLVVAALVAFFIGFAL 287 (546)
Q Consensus 263 m~~~~~~l~~l~~a~~~~~~~g~~~ 287 (546)
|..++.++++++++++++.++-.-+
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~ 25 (409)
T TIGR00540 1 MFKVLFLFLLLIAGIVAGPMIAGHQ 25 (409)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444444555555545444444333
No 226
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.54 E-value=1.9e+02 Score=33.72 Aligned_cols=86 Identities=28% Similarity=0.585 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHhh-----hhhHHHHHH-------HHhhhhhhcchhhHHHH
Q 009016 273 LVVAALVAFFIGFAL----------ALVVVALSGTILLWLYG-----SFWTTFFVI-------FLGGLAFKFTHERLALF 330 (546)
Q Consensus 273 l~~a~~~~~~~g~~~----------~~~iv~l~gi~ilW~y~-----~fw~t~~~~-------i~gg~~f~l~h~r~~~~ 330 (546)
|.||+.++.-.||+- ||-|.+|.=...||.=+ .||.+..-+ --||+.|..|---+-+|
T Consensus 148 L~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHVl 227 (751)
T KOG2292|consen 148 LLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHVL 227 (751)
T ss_pred HHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHHH
Confidence 455555555566653 23344444444566532 466654322 24899999987777677
Q ss_pred HHHHhhhhhheeehhh-----hhHHHhhhhhhh
Q 009016 331 ITTMYSIYCAWTYVGW-----LGLLLALNLSFV 358 (546)
Q Consensus 331 i~~~y~vy~~~~~~gW-----lg~~ls~nlsFl 358 (546)
++.+--=|+-|+|++. ||.+||+-..|+
T Consensus 228 vlllmGRyS~rlyiaY~t~y~lGtllsmqipfV 260 (751)
T KOG2292|consen 228 VLLLMGRYSSRLYIAYTTFYCLGTLLSMQIPFV 260 (751)
T ss_pred HHHHhcccccceeeehhhHHHHHHHHHccCccc
Confidence 7666666777777764 788998887754
No 227
>PRK14416 membrane protein; Provisional
Probab=23.41 E-value=5.4e+02 Score=26.06 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=5.2
Q ss_pred HHHHhhhhhHH
Q 009016 299 LLWLYGSFWTT 309 (546)
Q Consensus 299 ilW~y~~fw~t 309 (546)
++|.+...|.+
T Consensus 147 ~~~~~~~~~~~ 157 (200)
T PRK14416 147 LVWYGSHSEFA 157 (200)
T ss_pred HHHHHcCchHH
Confidence 34555444444
No 228
>PRK07668 hypothetical protein; Validated
Probab=23.37 E-value=7.3e+02 Score=25.98 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhheeehhhhhHHH
Q 009016 327 LALFITTMYSIYCAWTYVGWLGLLL 351 (546)
Q Consensus 327 ~~~~i~~~y~vy~~~~~~gWlg~~l 351 (546)
++..+..+-.+.|+++. ||++.+.
T Consensus 181 l~~~~~i~~~~~~~~~~-~~~~~l~ 204 (254)
T PRK07668 181 LAGLIFLITVIINIYFL-GWFGLLY 204 (254)
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHH
Confidence 33344455556666665 8887654
No 229
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.17 E-value=1.4e+02 Score=23.85 Aligned_cols=22 Identities=32% Similarity=0.842 Sum_probs=16.3
Q ss_pred HHHHhhhhhHHHHHHHHhhhhh
Q 009016 299 LLWLYGSFWTTFFVIFLGGLAF 320 (546)
Q Consensus 299 ilW~y~~fw~t~~~~i~gg~~f 320 (546)
++|+...||-|-+++++.+.-+
T Consensus 22 ~l~l~~GF~~tl~i~~~~~iG~ 43 (51)
T PF10031_consen 22 LLILTFGFWKTLFILLFAAIGY 43 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788998888887776443
No 230
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=23.17 E-value=7e+02 Score=24.23 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHH
Q 009016 210 PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVG 265 (546)
Q Consensus 210 p~v~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~ 265 (546)
++|.......--+.+.++.-+..|.+-=+.+ -. |+.-+++++|..+..-.|..|
T Consensus 32 ~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~-~~-~~~~~lai~y~~~~~P~sf~~ 85 (177)
T PF04144_consen 32 RLVKRAYYLWLFLAITLFWNFIACLALLIAG-GS-GSDFGLAILYLLLGTPASFFC 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-cceehHHHHHHHHHhHHHHHH
Confidence 3444433333344455555566665544433 12 667778888866665555544
No 231
>COG3704 VirB6 Type IV secretory pathway, VirB6 components [Intracellular trafficking and secretion]
Probab=23.09 E-value=3.5e+02 Score=30.12 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 009016 163 VVVRSLRVYVVPTLKAAIEL 182 (546)
Q Consensus 163 ~~~~~~r~~~~~~~~~~~~w 182 (546)
+..|..+.-+.....-.|..
T Consensus 105 ~~~~~~~~~v~~~v~n~~~y 124 (406)
T COG3704 105 PFLRIKIAGVAALVANAAGY 124 (406)
T ss_pred HHHHHHHHHHHHHHHhccCc
Confidence 44555555554444444433
No 232
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.99 E-value=1e+02 Score=31.11 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 009016 276 AALVAFFIGFALALVVVALSGT 297 (546)
Q Consensus 276 a~~~~~~~g~~~~~~iv~l~gi 297 (546)
.+++++++++.|-+++++++++
T Consensus 234 ~~lv~~l~~l~p~~~~~~~~~~ 255 (262)
T PF14257_consen 234 SGLVVFLVGLLPWLPLILIIGL 255 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666655544333
No 233
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=22.72 E-value=2.3e+02 Score=27.96 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009016 256 SILSVIAMVGMFKFLMVLVVAA 277 (546)
Q Consensus 256 ~~~s~~sm~~~~~~l~~l~~a~ 277 (546)
.|+|++|..-...||++|..++
T Consensus 72 lflsltslaiaywwlpsmtftg 93 (233)
T PF10943_consen 72 LFLSLTSLAIAYWWLPSMTFTG 93 (233)
T ss_pred HHHHHHHHHHHHHhccccceeh
Confidence 4799999999999999997654
No 234
>TIGR03155 sulfolob_CbsB cytochrome b558/566, subunit B. Members of this protein family are CbsB, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=22.64 E-value=3.5e+02 Score=28.76 Aligned_cols=58 Identities=19% Similarity=0.465 Sum_probs=38.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHH
Q 009016 241 FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFAL-------------ALVVVALSGTI 298 (546)
Q Consensus 241 ~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~-------------~~~iv~l~gi~ 298 (546)
+.|+|..+|..-.-.-.+--.-++--.|.|++++++-++.-++-+.| .+.++|+.+++
T Consensus 42 L~~iGni~fY~~fv~l~lvSills~kykaLlplti~LlISpf~~LIpnY~~Sp~wy~~EI~i~ilgI~~~i 112 (302)
T TIGR03155 42 LLRIGNVSFYIFFISLLLVSLLLSNKYKALLPLTIVLIISPFLALIPNYVSSTYYYSIEIFIIIVGIMALI 112 (302)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhccccccchHHHHHHHHHHHHHHHHHH
Confidence 46899999875433333322334566788999999988877665554 56677766643
No 235
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=22.27 E-value=4.6e+02 Score=27.13 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=25.9
Q ss_pred HhhhhhheeehhhhhHHHhhh--hhhhhHHHHHHHHh
Q 009016 334 MYSIYCAWTYVGWLGLLLALN--LSFVSSDALIFFLK 368 (546)
Q Consensus 334 ~y~vy~~~~~~gWlg~~ls~n--lsFls~DiL~~fLq 368 (546)
+++|=-.|.+-||+|.+...= ++|+.+=+.++.++
T Consensus 119 il~V~~~R~~eG~vGi~s~iWa~l~~l~~~~~D~~v~ 155 (232)
T PF10329_consen 119 ILAVPYTRHEEGWVGIASVIWAFLSSLWGILADRYVE 155 (232)
T ss_pred HHhhHhHHhHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555678889999876543 36888888888887
No 236
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=22.17 E-value=2.4e+02 Score=28.99 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=4.5
Q ss_pred HHHHHHHHhcC
Q 009016 177 KAAIELLERQS 187 (546)
Q Consensus 177 ~~~~~w~~~~~ 187 (546)
++..+++++..
T Consensus 108 ~~i~~~i~~~~ 118 (333)
T PF03176_consen 108 KAIRDIIKEAE 118 (333)
T ss_pred HHHHHHHHHhh
Confidence 33334444443
No 237
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.03 E-value=1.3e+03 Score=26.81 Aligned_cols=125 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 009016 213 LNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVL----------VVAALVAFF 282 (546)
Q Consensus 213 ~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l----------~~a~~~~~~ 282 (546)
.+...+..-.+++.+.+|.-+.-.=--- -|.|-..|++..|....+..++.++.--..++ .-+-.++..
T Consensus 360 ~r~~~~~~~~~~lg~~~~~~~~~~~~~~-~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~ 438 (613)
T KOG0061|consen 360 LRLIQSLVTGLLLGLLYLNLGNDAKGIQ-NRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKT 438 (613)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHH
Q ss_pred HhhhHHHH-HHHHHHHHHHHHhh---------hhhHHHHHHHHhhhhhhc------chhhHHHHHHHHhhhh
Q 009016 283 IGFALALV-VVALSGTILLWLYG---------SFWTTFFVIFLGGLAFKF------THERLALFITTMYSIY 338 (546)
Q Consensus 283 ~g~~~~~~-iv~l~gi~ilW~y~---------~fw~t~~~~i~gg~~f~l------~h~r~~~~i~~~y~vy 338 (546)
+...|-++ .--+|.++.-||-| +|..+.++.++.+..|.+ .+.-.+..++.+..++
T Consensus 439 l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~ 510 (613)
T KOG0061|consen 439 LAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLP 510 (613)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHH
No 238
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=21.91 E-value=4.6e+02 Score=31.21 Aligned_cols=98 Identities=21% Similarity=0.260 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcc
Q 009016 247 TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALV---VVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 323 (546)
Q Consensus 247 ~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~---iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~ 323 (546)
+++..|.|.-=|...+..++ -+|+.+++-++.+.++|..+--+ .|-|++|. ++-+++||-.|..+
T Consensus 7 ~~~~~ifw~wnlt~~~l~~~-~i~pf~~~p~i~~~~~g~~~~~~a~~~i~liaip-----------~i~~~ig~~~f~~~ 74 (952)
T TIGR02921 7 ACCEGIFWFWNLTFASLTGL-GILPFFGLPAILAAAIGDHPIEFALALILLIAIP-----------AICIGIGGTCFLKN 74 (952)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhhhccccHHHHHHHcccchHHHHHHHHHHHHHH-----------HHHhhhcchhhhcC
Confidence 45666777665555555443 35666677777777777655433 33333333 45567777777665
Q ss_pred hhhHHHHHHHHhhhhhhee---ehhhhhHHHhhhhhhhhHHH
Q 009016 324 HERLALFITTMYSIYCAWT---YVGWLGLLLALNLSFVSSDA 362 (546)
Q Consensus 324 h~r~~~~i~~~y~vy~~~~---~~gWlg~~ls~nlsFls~Di 362 (546)
--.+ +-+.|++-- ...-+-+||.+.|.=-|+.+
T Consensus 75 p~~l------iklfygve~pi~~i~l~~lflirel~p~~s~i 110 (952)
T TIGR02921 75 PTAL------IKLFYGVEAPIFFICLLRLFLIRELNPASSHI 110 (952)
T ss_pred cHHH------HHHHHcccchHHHHHHHHHHHHHhcCcchhhH
Confidence 4333 333444432 33344566766665333333
No 239
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=21.88 E-value=5.4e+02 Score=26.13 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh-----hhH--------HHHHHHHhhhhhhcchhhH
Q 009016 261 IAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGS-----FWT--------TFFVIFLGGLAFKFTHERL 327 (546)
Q Consensus 261 ~sm~~~~~~l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~-----fw~--------t~~~~i~gg~~f~l~h~r~ 327 (546)
+|.--.+.+-+++.+.+++..+. ..+..++++++|+++.|.|.. -|. ++..++.|+....-.+...
T Consensus 80 is~~~a~~~~~~l~~~g~~~~~~-l~~~~~~~~~~~~~~~~~Yt~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~~ 158 (276)
T PRK12882 80 VSPRGALAFSILLFAAGVALAFL-LPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLA 158 (276)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcccchHH
Q ss_pred HHHHHHHhhh
Q 009016 328 ALFITTMYSI 337 (546)
Q Consensus 328 ~~~i~~~y~v 337 (546)
++++......
T Consensus 159 ~~~l~~~~fl 168 (276)
T PRK12882 159 LLVLFALAAL 168 (276)
T ss_pred HHHHHHHHHH
No 240
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=21.86 E-value=6.3e+02 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHhhhhh
Q 009016 274 VVAALVAFFIGFALALVVVALSGTIL-----LWLYGSFWTTFFVIFLGGLAF 320 (546)
Q Consensus 274 ~~a~~~~~~~g~~~~~~iv~l~gi~i-----lW~y~~fw~t~~~~i~gg~~f 320 (546)
++....++-+|..+-++++|+++--+ -||-.--.+.++++++-|+.+
T Consensus 327 g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~l 378 (571)
T PRK00293 327 GGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFL 378 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667766777888887544 355443345565555555443
No 241
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=21.85 E-value=2.7e+02 Score=31.95 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 009016 219 FAKIMLL 225 (546)
Q Consensus 219 ~~~~~ll 225 (546)
+.+++.|
T Consensus 375 i~Nl~eL 381 (527)
T PF03142_consen 375 IHNLFEL 381 (527)
T ss_pred HhhHhHH
Confidence 3444443
No 242
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=21.82 E-value=2.4e+02 Score=29.05 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHhhhhhhc
Q 009016 284 GFALALVVVALSGTILLWLYGSFWTTFF--VIFLGGLAFKF 322 (546)
Q Consensus 284 g~~~~~~iv~l~gi~ilW~y~~fw~t~~--~~i~gg~~f~l 322 (546)
|.+.+++++..+--.+-|++-.+|...+ ++++|...|.+
T Consensus 74 g~~~~~y~l~~~~~nl~~il~~~~~~v~~yv~~~G~vsf~v 114 (249)
T PF10225_consen 74 GWSFGLYFLQQLWENLQSILEEYRIYVLGYVLVVGLVSFAV 114 (249)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444443344444343332 34444444444
No 243
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=21.71 E-value=5.3e+02 Score=28.71 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009016 249 FFSVIWCSILSVIAMVG 265 (546)
Q Consensus 249 ~~~i~w~~~~s~~sm~~ 265 (546)
=.++||-+++++++-..
T Consensus 238 H~l~~yGFil~f~aT~v 254 (389)
T PRK15033 238 HHLTFYGFMLCFAATVV 254 (389)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777666544
No 244
>PF03203 MerC: MerC mercury resistance protein
Probab=21.68 E-value=5.9e+02 Score=22.85 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009016 253 IWCSILSVIAMVGMFKFLMVLVVAA 277 (546)
Q Consensus 253 ~w~~~~s~~sm~~~~~~l~~l~~a~ 277 (546)
+|.+.+|++-+.++=.++..+.+.+
T Consensus 6 i~~S~LC~iHCl~~P~l~~~l~~~g 30 (116)
T PF03203_consen 6 IGASLLCAIHCLALPALLALLPALG 30 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888887755544444444333
No 245
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=21.65 E-value=3.9e+02 Score=29.98 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhhHHHHHH
Q 009016 295 SGTILLWLYGSFWTTFFVI 313 (546)
Q Consensus 295 ~gi~ilW~y~~fw~t~~~~ 313 (546)
+||++=|+-+++|+++=-+
T Consensus 249 aallLYWv~snlwtl~Qq~ 267 (429)
T PRK00247 249 TAIALYWVANNLWTLIQNI 267 (429)
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3788899999999876443
No 246
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=21.58 E-value=3.5e+02 Score=28.83 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=12.0
Q ss_pred hhhhhheeehhhhhHHH
Q 009016 335 YSIYCAWTYVGWLGLLL 351 (546)
Q Consensus 335 y~vy~~~~~~gWlg~~l 351 (546)
|.-++...+.-|.|.--
T Consensus 455 ~T~~G~~~~~~~~gfr~ 471 (511)
T PF09972_consen 455 RTPEGAELYAQWKGFRR 471 (511)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 66667777777887655
No 247
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=21.39 E-value=2.4e+02 Score=34.38 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHH----HHHHHHHHH
Q 009016 234 TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI-GFALALV----VVALSGTIL 299 (546)
Q Consensus 234 ~~rg~~s~~~~g~~~~~~i~w~~~~s~~sm~~~~~~l~~l~~a~~~~~~~-g~~~~~~----iv~l~gi~i 299 (546)
+.+.+-..+=++-...|+||=..|=|+....-++..++.-.+.++.++++ |..++++ +++|+||++
T Consensus 848 ~~~~l~~~~~~al~li~liL~~~F~S~~~pliI~~tIPlal~G~~~~L~l~g~~l~~~s~iG~i~L~GIvv 918 (1025)
T PRK10614 848 TMNSQLILILAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVK 918 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHH
No 248
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.33 E-value=1.1e+03 Score=26.57 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Q 009016 209 YPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVI--AMVGMFKFLMVLVVAALVAFFIGFA 286 (546)
Q Consensus 209 ~p~v~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s~~--sm~~~~~~l~~l~~a~~~~~~~g~~ 286 (546)
||...+.-.+..--+++...+|.-..--| -.++..+..+=||+++.. ..--+..++....++++++.+..|.
T Consensus 336 ~~~A~~~alra~la~~~~~l~Wi~t~W~~------G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 336 WPLALRNALRAFLAILIAGLFWIATGWPS------GATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF 409 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCh------hHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcchhhHHHHHHHHhhh
Q 009016 287 LALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSI 337 (546)
Q Consensus 287 ~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~h~r~~~~i~~~y~v 337 (546)
.-=.+-+ |..++|.+ +-|++.+.+ .+-..++.-..+.+...+.+
T Consensus 410 vlP~~~~-f~~L~l~l-~~~l~~~~~-----~~~~p~~~~~g~~~~v~f~~ 453 (650)
T PF04632_consen 410 VLPHLDG-FPLLALVL-APFLFLGGL-----LMARPRTAYIGLGFAVFFLL 453 (650)
T ss_pred hhhccCc-HHHHHHHH-HHHHHHHHH-----HHcCchHHHHHHHHHHHHHH
No 249
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=21.32 E-value=3.5e+02 Score=20.56 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 460 KREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 460 KKAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
.+.+++..+.-|||.. ..+..+.+.+.|..|+|..+...++.
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777788889844 35788999999999997665544444
No 250
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=21.26 E-value=4.3e+02 Score=28.02 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 009016 206 QQVYPVALNHLGHFAKIMLLL 226 (546)
Q Consensus 206 ~~~~p~v~~~~~~~~~~~ll~ 226 (546)
+.+=|.+..-+.+-+-+.+++
T Consensus 114 ~~Vgp~~g~~~~~~~~~a~~~ 134 (297)
T PRK13021 114 SIVGPQVGQELAEQGGLALLV 134 (297)
T ss_pred eEECHHHHHHHHHHHHHHHHH
Confidence 556677777776666555443
No 251
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=21.23 E-value=1.3e+03 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=10.7
Q ss_pred hHHHH-HHHHHHHHHHHHh
Q 009016 286 ALALV-VVALSGTILLWLY 303 (546)
Q Consensus 286 ~~~~~-iv~l~gi~ilW~y 303 (546)
.|-.+ .+-+|.+++-||-
T Consensus 445 lp~~~~~~~if~~i~Y~~~ 463 (617)
T TIGR00955 445 LPLFIILPALFTSITYWMI 463 (617)
T ss_pred HHHHHHHHHHHHhhhheec
Confidence 34333 3447777888874
No 252
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.20 E-value=2.8e+02 Score=22.45 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 009016 461 REYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD 506 (546)
Q Consensus 461 KAYRKLAlk~HPDKn~~~~eA~E~Fk~IneAYeVLSDP~kRa~YD~ 506 (546)
+..|...+.-||+.. ..+..+.|.+.|..|++..+...+|.
T Consensus 14 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE-----NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666677799854 25788999999999998877665554
No 253
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.06 E-value=3e+02 Score=26.88 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhcchhhH
Q 009016 259 SVIAMVGMFKFLMVL--VVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERL 327 (546)
Q Consensus 259 s~~sm~~~~~~l~~l--~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~fw~t~~~~i~gg~~f~l~h~r~ 327 (546)
|+..-+-++|+++.+ .++++...++|+.=.+-++++ ++..++|+++...|.|.
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~----------------~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGA----------------FLGLALGFLLARRYSRK 127 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 344455667776554 455555667777666655533 44555555555555554
No 254
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.80 E-value=4.4e+02 Score=23.98 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHH-HHHHHHHhhh
Q 009016 260 VIAMVGMFKFLMVLVVAALVAFFIG------------FALALVVVALS-GTILLWLYGS 305 (546)
Q Consensus 260 ~~sm~~~~~~l~~l~~a~~~~~~~g------------~~~~~~iv~l~-gi~ilW~y~~ 305 (546)
...+.-+--+-+.|++..+++.|+| +|..++++|++ |+.-.|++..
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
No 255
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=20.65 E-value=4.1e+02 Score=29.38 Aligned_cols=47 Identities=21% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhh
Q 009016 270 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGS-FWTTFFVIFLGG 317 (546)
Q Consensus 270 l~~l~~a~~~~~~~g~~~~~~iv~l~gi~ilW~y~~-fw~t~~~~i~gg 317 (546)
.+.++++...++...+..++++.+ +.+..+|..-- .|.+-..+++|-
T Consensus 164 ~l~~gl~lGL~~ltKg~~~~~l~~-~~~~~l~~~~~~~~~~~~~~~~g~ 211 (535)
T COG1807 164 LLLLGLALGLGFLTKGPGALLLPL-ILLLLLLAPRLRRLLRDLRLWLGL 211 (535)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455566666666666666666553 33444443332 244444444444
No 256
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=20.51 E-value=2.4e+02 Score=24.85 Aligned_cols=35 Identities=3% Similarity=0.017 Sum_probs=27.0
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHHHHHhhCCCCC
Q 009016 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKN 475 (546)
Q Consensus 439 ~~DyYeILGL~~~~~AS~eEIKKAYRKLAlk~HPDKn 475 (546)
+++.-+++|++| .++.+||+.+-++.++++.--..
T Consensus 2 CRNIk~LfnfdP--PAT~~EvrdAAlQfVRKlSGtT~ 36 (88)
T COG5552 2 CRNIKELFNFDP--PATPVEVRDAALQFVRKLSGTTH 36 (88)
T ss_pred ccchHHHhCCCC--CCCcHHHHHHHHHHHHHhcCCCC
Confidence 345567889999 89999999998888887644433
No 257
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=20.31 E-value=6.2e+02 Score=22.57 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 009016 206 QQVYPVALNHLGHFAKIMLLLSMLWLD 232 (546)
Q Consensus 206 ~~~~p~v~~~~~~~~~~~ll~~~~w~d 232 (546)
.+.||.+..+++-...++++.-.....
T Consensus 34 p~~fP~~l~~~l~~~~~~l~~~~~~~~ 60 (141)
T PF07331_consen 34 PGFFPRLLGILLLILSLLLLVRSFRGP 60 (141)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467999999999998888877666653
No 258
>PLN00151 potassium transporter; Provisional
Probab=20.30 E-value=4e+02 Score=32.44 Aligned_cols=91 Identities=14% Similarity=0.301 Sum_probs=51.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhhHHHHHHHHHHH-----HHHHHH-----HHHHHHHHH
Q 009016 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILS-----VIAMVG-----MFKFLMVLV 274 (546)
Q Consensus 205 ~~~~~p~v~~~~~~~~~~~ll~~~~w~dc~~rg~~s~~~~g~~~~~~i~w~~~~s-----~~sm~~-----~~~~l~~l~ 274 (546)
..|.|=-.-.|+.-.+.+.+ +=||++.-+||.|-=+.|+...++. +....+ ++-++..++
T Consensus 466 ~GQIYIP~vNw~Lmv~~i~v----------~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~ 535 (852)
T PLN00151 466 MGQIYIPVINWFLLVMCLVV----------VCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVV 535 (852)
T ss_pred CCceeeHHHHHHHHHHHHhh----------eeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 34555555566665555543 4589999999988655555443322 111110 111122222
Q ss_pred HHHHHHHHH----------hhhHHHHHHHHHHHHHHHHhhh
Q 009016 275 VAALVAFFI----------GFALALVVVALSGTILLWLYGS 305 (546)
Q Consensus 275 ~a~~~~~~~----------g~~~~~~iv~l~gi~ilW~y~~ 305 (546)
...+.+.|+ |+.|-++-..++.|+..|.||.
T Consensus 536 F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~ 576 (852)
T PLN00151 536 FLSVELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWNYGS 576 (852)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 233333333 5677777777888999999995
No 259
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=20.28 E-value=1.1e+03 Score=25.35 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHhhhhhheeehhhhhHHHh
Q 009016 329 LFITTMYSIYCAWTYVGWLGLLLA 352 (546)
Q Consensus 329 ~~i~~~y~vy~~~~~~gWlg~~ls 352 (546)
..+++++++..-.+|+||+|+.+.
T Consensus 200 ~~~l~~~al~lT~SRga~l~~~~~ 223 (402)
T TIGR03097 200 TMLLTVISVLGSYSRGALLALVAM 223 (402)
T ss_pred HHHHHHHHHHHccchHHHHHHHHH
Confidence 355677888899999999997764
No 260
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=20.17 E-value=6.6e+02 Score=26.09 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009016 288 ALVVVALSGTILLWLYG 304 (546)
Q Consensus 288 ~~~iv~l~gi~ilW~y~ 304 (546)
.++++|++|+++-|.|-
T Consensus 117 ~~l~l~~~~~~~~~~Yt 133 (296)
T PRK05951 117 GAVTLALLGVFLWTCYM 133 (296)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 46778888888888883
Done!