Your job contains 1 sequence.
>009017
MVCTANDLSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDK
PENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS
EDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVLV
PQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVETT
CGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPS
KASGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR
HILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQ
MWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNS
YAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRI
NGSHPC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009017
(546 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 1074 1.1e-108 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 322 1.3e-28 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 181 7.0e-24 2
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 181 7.0e-24 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 174 2.6e-21 2
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 180 7.1e-21 3
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 184 8.3e-21 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 178 2.7e-20 3
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 158 1.5e-19 2
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 166 2.4e-17 2
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 163 1.1e-16 2
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 231 2.1e-16 1
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 112 3.9e-08 2
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 144 4.2e-08 2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 150 2.3e-07 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 139 8.0e-07 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 141 2.3e-06 2
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 134 3.9e-06 1
TAIR|locus:2063746 - symbol:AT2G03500 "AT2G03500" species... 137 5.5e-06 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 147 6.6e-06 2
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 134 7.1e-06 1
TAIR|locus:2205339 - symbol:HRS1 "HYPERSENSITIVITY TO LOW... 126 5.9e-05 1
TAIR|locus:2115070 - symbol:AT4G37180 species:3702 "Arabi... 126 6.5e-05 1
TAIR|locus:2031210 - symbol:AT1G25550 species:3702 "Arabi... 125 7.6e-05 1
TAIR|locus:2085984 - symbol:AT3G25790 species:3702 "Arabi... 120 0.00029 1
TAIR|locus:2026863 - symbol:AT1G68670 species:3702 "Arabi... 117 0.00062 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 107 0.00063 2
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 282/590 (47%), Positives = 353/590 (59%)
Query: 1 MVCTANDLSAWKDFPKGLRVLLL------DQDSSAAAELKFKLEAMDYIVSTFYNENEAL 54
MV TANDLS W++FPKGL+VLLL D D S+AAE + +LE+MDYIV+TF +E EAL
Sbjct: 1 MVITANDLSKWENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEAL 60
Query: 55 SAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD-LPTIITSNIHCLSTMMKCIALGAVE 113
SA PE+FH+AIVEV S SFKFLE AKD LPTI+ S HC++T MKCIALGAVE
Sbjct: 61 SAVVKNPESFHIAIVEVNMSAESESFKFLEAAKDVLPTIMISTDHCITTTMKCIALGAVE 120
Query: 114 FLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHXXXXXXXXXXXXXX 173
FL+KPLS +KL+N+WQHVVHKAFN GGS +S SLKPVKESVVSMLH
Sbjct: 121 FLQKPLSPEKLKNIWQHVVHKAFNDGGSNVSISLKPVKESVVSMLHL------------- 167
Query: 174 XXXYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFS-------TEKE 226
+ + ++ +K PAPSTPQLKQ RLLD DCQ+N NFS TEK+
Sbjct: 168 -----------ETDMTI-EEKDPAPSTPQLKQDSRLLDG-DCQENINFSMENVNSSTEKD 214
Query: 227 SAE--QD-GESKFVETTCGNSIAEGTLQEDKP--QRPRETIVKEEHDPTNGSKTE-CNML 280
+ E QD GESK V+TT L +DK + R KEE T +E + +
Sbjct: 215 NMEDHQDIGESKSVDTT------NRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSV 268
Query: 281 PLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKM-----------KAVEQLGVDQA 329
+ ++D K N K+SG++N GNK +RKK+ +AVEQLGVDQA
Sbjct: 269 DIHKKEDETKPIN-------KSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVEQLGVDQA 321
Query: 330 IPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARDQML---RNY--- 382
IPSRILELMKV LTRHNVASHLQK+R HR++ILPK+D + +W +R+ RNY
Sbjct: 322 IPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRENHRPNQRNYNVF 381
Query: 383 -YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKP- 440
H+P+MA+P + + P G + P+W P L ++ G PP W+WKP
Sbjct: 382 QQQHRPVMAYPVWGLPGVYPPGAIPPLWPPP---LQSI------GQPP-----PWHWKPP 427
Query: 441 YPGMPADAWGCPVMPLPNGPY---SSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVI 497
YP + +AWGCPV P G Y S+ G Y N G + MP + P EE++
Sbjct: 428 YPTVSGNAWGCPVGPPVTGSYITPSNTTAGGFQYPN-GAETGFKIMPASQ----PDEEML 482
Query: 498 DKVVKEAISXXXXXXXXXXXXXSADSVLAELSRQGISTIPPR---INGSH 544
D+VVKEAIS SA+SVLAEL+RQGIS +P INGSH
Sbjct: 483 DQVVKEAISKPWLPLPLGLKPPSAESVLAELTRQGISAVPSSSCLINGSH 532
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 322 (118.4 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 92/239 (38%), Positives = 122/239 (51%)
Query: 314 NRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPH 373
+RK ++AVEQLGVD+A+PSRILE+M V+ LTRHNVASHLQKYR HR+H+L +E +
Sbjct: 157 HRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHLLAREAE----- 211
Query: 374 ARDQMLRNYYPHKPIMAFPPYHSNHLVP-TGPV--YPVWGAPSNH--LAAVQMWAPPGYP 428
A LR H + A P P T P YP AP +H + +W P +P
Sbjct: 212 AASWNLRR---HATV-AVPGVGGGGKKPWTAPALGYPPHVAPMHHGHFRPLHVWGHPTWP 267
Query: 429 PWQ-QAESWNWKPYPGMPADAWGCPVMPLPNGPY----SSFPQG---ASGYHNS-GVDDN 479
+ + + YP MPA A P + PY +PQG AS H+S GV
Sbjct: 268 KHKPNTPASAHRTYP-MPAIA-AAPASWPGHPPYWHQQPLYPQGYGMASSNHSSIGVPTR 325
Query: 480 SYAMPQNSVDLHPAEEVIDKVVKEAISXXXXXXXXXXXXXSADSVLAELSRQGISTIPP 538
+D+HP+ E ID + + IS S D V+ EL RQG+S +PP
Sbjct: 326 QLGPTNPPIDIHPSNESIDAAIGDVISKPWLPLPLGLKPPSVDGVMTELQRQGVSNVPP 384
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 181 (68.8 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 43/123 (34%), Positives = 69/123 (56%)
Query: 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73
+P GLRVL++D D S + ++ L Y V+T+ N EA+ D P+ + I +
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 SNTDGSFKFLE-TAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131
DG E T+K +PT+I ++ +T+MK +A GA +FL KP+ ++L N+WQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 132 VHK 134
K
Sbjct: 127 FRK 129
Score = 162 (62.1 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 40/115 (34%), Positives = 62/115 (53%)
Query: 253 DKPQRPRETIVKEEHDP--TNGSKTECNMLPLPYE-KDNLKGSNCVIENPSKASGLQNSC 309
+KP P + P T + TE ++ PL E +D++ N I + + +
Sbjct: 144 EKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTW 203
Query: 310 GNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP 364
+ +R+ + AV LG D+A+P +IL +MKV+ LTR VASHLQKYRM + +P
Sbjct: 204 TTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIP 258
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 181 (68.8 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 43/123 (34%), Positives = 69/123 (56%)
Query: 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73
+P GLRVL++D D S + ++ L Y V+T+ N EA+ D P+ + I +
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 74 SNTDGSFKFLE-TAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131
DG E T+K +PT+I ++ +T+MK +A GA +FL KP+ ++L N+WQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 132 VHK 134
K
Sbjct: 127 FRK 129
Score = 162 (62.1 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 40/115 (34%), Positives = 62/115 (53%)
Query: 253 DKPQRPRETIVKEEHDP--TNGSKTECNMLPLPYE-KDNLKGSNCVIENPSKASGLQNSC 309
+KP P + P T + TE ++ PL E +D++ N I + + +
Sbjct: 144 EKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTW 203
Query: 310 GNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP 364
+ +R+ + AV LG D+A+P +IL +MKV+ LTR VASHLQKYRM + +P
Sbjct: 204 TTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIP 258
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 174 (66.3 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 46/127 (36%), Positives = 64/127 (50%)
Query: 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73
FP LRVL++D D + L+ L Y V+ ALS F + I +V
Sbjct: 24 FPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHM 83
Query: 74 SNTDGSFKFLETA---KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130
+ DG FK LE DLP I+ S S ++K + GAV++L KP+ + L+N+WQH
Sbjct: 84 PDMDG-FKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQH 142
Query: 131 VVHKAFN 137
VV K N
Sbjct: 143 VVRKKRN 149
Score = 157 (60.3 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 40/116 (34%), Positives = 64/116 (55%)
Query: 248 GTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDN-LKGSNCVIENPSKASGLQ 306
G++++ R R+ +E+ D + S E N K+ + E+ S +
Sbjct: 159 GSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPR 218
Query: 307 NSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362
+ +++ + AV QLGVD+A+P +ILE+M V GLTR NVASHLQKYR++ R +
Sbjct: 219 VVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 180 (68.4 bits), Expect = 7.1e-21, Sum P(3) = 7.1e-21
Identities = 46/124 (37%), Positives = 64/124 (51%)
Query: 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73
FP GLRVL++D D + L+ L Y V+ ALS F + I +V
Sbjct: 33 FPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHM 92
Query: 74 SNTDGSFKFLETA---KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130
+ DG FK LE DLP I+ S S ++K + GAV++L KP+ + L+N+WQH
Sbjct: 93 PDMDG-FKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQH 151
Query: 131 VVHK 134
VV K
Sbjct: 152 VVRK 155
Score = 151 (58.2 bits), Expect = 7.1e-21, Sum P(3) = 7.1e-21
Identities = 29/43 (67%), Positives = 36/43 (83%)
Query: 320 AVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362
AV QLGV++A+P +ILELM V GLTR NVASHLQKYR++ R +
Sbjct: 253 AVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL 295
Score = 38 (18.4 bits), Expect = 7.1e-21, Sum P(3) = 7.1e-21
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 373 HARDQM-LRNYYPHKPIMAFP 392
H+ M N+ P P+ +FP
Sbjct: 503 HSSSSMPYNNFQPELPVNSFP 523
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 184 (69.8 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 49/144 (34%), Positives = 71/144 (49%)
Query: 7 DLSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHV 66
+L A FP G+RVL +D D + L+ L Y V+T +AL + F +
Sbjct: 6 NLEALDQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDL 65
Query: 67 AIVEVTTSNTDGSFKFLETA---KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDK 123
I +V + DG FK LE DLP I+ S +MK + GA ++L KP+ ++
Sbjct: 66 VISDVDMPDMDG-FKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEE 124
Query: 124 LRNLWQHVVHKAF--NAGGSALSD 145
L+N+WQHVV F N G + D
Sbjct: 125 LKNIWQHVVRSRFDKNRGSNNNGD 148
Score = 140 (54.3 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 314 NRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362
++K + AV QLG ++A+P +IL+LM VE LTR NVASHLQK+R++ + I
Sbjct: 205 HKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRI 253
Score = 37 (18.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 280 LPLPYEKDNLKGSN 293
LP+P E D L+ +N
Sbjct: 359 LPMPLEFDQLQTNN 372
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 178 (67.7 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 44/132 (33%), Positives = 67/132 (50%)
Query: 7 DLSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHV 66
++ FP G+RVL +D D + L+ L+ Y V+T AL + F +
Sbjct: 6 EIEVLDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDL 65
Query: 67 AIVEVTTSNTDGSFKFLETA---KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDK 123
I +V + DG FK LE DLP I+ S +MK + GA ++L KP+ ++
Sbjct: 66 VISDVDMPDMDG-FKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEE 124
Query: 124 LRNLWQHVVHKA 135
L+N+WQHVV K+
Sbjct: 125 LKNIWQHVVRKS 136
Score = 142 (55.0 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 311 NKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRK 370
++ + K + AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+ + + +
Sbjct: 190 HELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVSDDAIQQA 249
Query: 371 WPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTG 403
A D K + F YH + +P G
Sbjct: 250 NRAAIDSHFMQMNSQKGLGGF--YHHHRGIPVG 280
Score = 39 (18.8 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 243 NSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTE 276
++++ G+ DK R R+ +EE + G+ +
Sbjct: 143 SNVSNGSGNCDKANRKRKEQYEEEEEEERGNDND 176
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 158 (60.7 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73
FP GLR+L++D D+S L+ L + Y V+ + AL+ ++ ++F + + +V
Sbjct: 7 FPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHM 66
Query: 74 SNTDGSFKFLETA----KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129
+G + L+ DLP I+ S +T+M I GA ++L KP+ ++L+N+WQ
Sbjct: 67 PGMNG-YNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQ 125
Query: 130 HVVHK 134
HVV +
Sbjct: 126 HVVRR 130
Score = 149 (57.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 35/115 (30%), Positives = 65/115 (56%)
Query: 250 LQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEK--DNLKGSNCVIENPSKASGLQN 307
L+++K ET+V + + S +C ++ D + ++ +P + +
Sbjct: 144 LEDNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNSKKSRV 203
Query: 308 SCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362
+ +++ + AV +LG+D+A+P RILELM V GL+R NVASHLQK+R++ + +
Sbjct: 204 VWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 166 (63.5 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 44/127 (34%), Positives = 73/127 (57%)
Query: 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE-NEALSAFSDKPENFHVAIVEV 71
+FP+GLRVL+ D+D S L+ L+ Y V T NE N+A+ + F +A+++V
Sbjct: 37 NFPEGLRVLVFDEDPSYLLILERHLQKFQYQV-TICNEVNKAMHTLRNHRNRFDLAMIQV 95
Query: 72 TTSNTDGS-FKFLE---TAKDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127
+N +G F+FL + DLP II S + ++ K + GA ++L KP+ + LR +
Sbjct: 96 --NNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIV 153
Query: 128 WQHVVHK 134
++H+V K
Sbjct: 154 FKHLVKK 160
Score = 112 (44.5 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 254 KPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCV---IENPSKASGLQNSCG 310
K R R ++V E + G K+ + K S+C+ + + +C
Sbjct: 159 KKMRERRSVVTGEAEKAAGEKSSSVGDSTIRNPNKSKRSSCLEAEVNEEDRHDHNDRACA 218
Query: 311 NKANRKK-----------MKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 353
+ A +++ + AV+ LG+++A+P +IL++MKV+ ++R NVASHLQ
Sbjct: 219 SSAKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 163 (62.4 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS 74
P GLRVL++D D + L+ L+ Y V+T EAL ++ + + + I +V
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 75 NTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131
+ DG FK LE DLP I+ S S +MK + GA ++L KP+ +L+ +WQHV
Sbjct: 68 DMDG-FKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHV 126
Query: 132 VHK 134
+ K
Sbjct: 127 LRK 129
Score = 121 (47.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 314 NRKKMKAVEQLGVD-QAIPSRILELMKVEGLTRHNVASHLQKYRMH 358
+ K + AV Q+G D +A P +IL+LM V LTR NVASHLQKYR++
Sbjct: 203 HHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLY 248
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 231 (86.4 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 68/197 (34%), Positives = 98/197 (49%)
Query: 314 NRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDR-KWP 372
+R+ ++AVEQLG+D+A+PSRILE+M ++ LTRHN+ASHLQKYR HR+H++ +E + W
Sbjct: 190 HRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHMIAREAEAASWT 249
Query: 373 HARDQMLRNYYPHKPIMAFPPYHSNHLVPT-G----PVYPVWGAPSNHLAA-VQMWAPPG 426
R Q+ Y +A P + VPT G P P AP H A + +W G
Sbjct: 250 QRR-QI---YAAGGGAVAKRPESNAWTVPTIGFPPPPPPPPSPAPIQHFARPLHVW---G 302
Query: 427 YPPWQQAESWNWKP---YPGMPADAWGCPVMPLPNGP---YSSFPQGASGYHNSGVDDNS 480
+P + W P P PA W P P P+ P + + +G + G +
Sbjct: 303 HPTMDPSRVPVWPPRHLVPRGPAPPWVPP--PPPSDPAFWHHPYMRGPAHVPTQGTPCMA 360
Query: 481 YAMPQNSVDLHPAEEVI 497
MP P V+
Sbjct: 361 MPMPAARFPAPPVPGVV 377
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 112 (44.5 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 32/119 (26%), Positives = 55/119 (46%)
Query: 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTD 77
+ +LL+D D+++ A L L+ V + ++ALS + + + I + + D
Sbjct: 13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72
Query: 78 GSFKFLETA--KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134
S FL KD+P I+ + + A L KP+S D ++N+WQHV K
Sbjct: 73 -SHSFLNALLLKDIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSK 130
Score = 97 (39.2 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 29/90 (32%), Positives = 39/90 (43%)
Query: 301 KASGLQNSCGNKANRKK-MKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 359
K+ G + S N K + A+ LG + P ILE+M LT V SHLQKY+
Sbjct: 218 KSVGRRKSLWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQI 277
Query: 360 RHI---LPKEDDRKWPHARDQMLRNYYPHK 386
I LP+ + R + YP K
Sbjct: 278 DQISYTLPRNESRSIDKTFEYPSNYKYPFK 307
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 144 (55.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 314 NRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI--LPKEDDRKW 371
+++ + V LG+ A+P I++LM VEGLTR NVASHLQKYR++ + I L E+D
Sbjct: 151 HKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLTTEED--- 207
Query: 372 PHARDQMLRNYYPHKP 387
P++ L + P P
Sbjct: 208 PYSSSDQLFSSTPVPP 223
Score = 49 (22.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 450 GCPVMPLPNG-PYSSF--PQGASGYH----NSGVDDNSYAMPQN 486
G PV P+P+ P + G GY+ N G + N Y M QN
Sbjct: 237 GVPV-PVPSMVPIPGYGNQMGMQGYYQQYSNHGNESNQYMMQQN 279
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 39/135 (28%), Positives = 69/135 (51%)
Query: 5 ANDLSAWKDF-PKG-LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPE 62
++++ W+ + PK LRVLL++ D S + L Y V + A +K
Sbjct: 22 SSEVVQWEKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSH 81
Query: 63 NFHVAIVEVTTSNTDGSFKFL------ETAKDLPTIITSNIHCLSTMMKCIALGAVEFLR 116
N + + E+ + G F L E K++P I+ S+ + ++KC+ GA ++L
Sbjct: 82 NIDLILTELDLPSISG-FALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLI 140
Query: 117 KPLSEDKLRNLWQHV 131
KP+ +++L+NLWQHV
Sbjct: 141 KPMRKNELKNLWQHV 155
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 139 (54.0 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 314 NRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362
+++ + AV LG+ A+P I++LM VEGLTR NVASHLQKYR++ R +
Sbjct: 115 HKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRM 163
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 141 (54.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 33/119 (27%), Positives = 61/119 (51%)
Query: 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTD 77
+R+LL D DS++ E+ L Y V+ + + + A + + + + + E+
Sbjct: 19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 78 GS--FKFLETAKDL---PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131
G +++ KDL P I+ S + ++KC+ LGA ++L KPL ++L NLW H+
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHM 137
Score = 47 (21.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 384 PHKP--IMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQ-MWAPPGYPP 429
P+ P + +P YH H + T + + ++ V W+P G PP
Sbjct: 475 PNHPNGMTGYPYYH--HPMNTSLQHSQMSLQNGQMSMVHHSWSPAGNPP 521
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 134 (52.2 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 314 NRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362
+++ + AV LG+ A+P I++LM V+GLTR NVASHLQKYR++ + +
Sbjct: 91 HKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 139
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 137 (53.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 47/146 (32%), Positives = 74/146 (50%)
Query: 226 ESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSK-TECNMLPLP- 283
++ +++G F+ + S+ E L + +R T EH TNG + +M+
Sbjct: 155 DAKQRNGSGAFLPFSKEQSLPELALSTEV-KRVSPT---NEH--TNGQDGNDESMINNDN 208
Query: 284 -YEKDNLKGSNC--VIENPSKASGLQNSCGNK-ANRKKMKAVEQLGVDQ-AIPSRILELM 338
Y +N SN V S+++ C + +R+ ++A++ LG Q A P +I ELM
Sbjct: 209 NYNNNNNNNSNSNGVSSTTSQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELM 268
Query: 339 KVEGLTRHNVASHLQKYRMHRRHILP 364
KV+GLT V SHLQKYR+H R P
Sbjct: 269 KVDGLTNDEVKSHLQKYRLHTRRPSP 294
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 147 (56.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 41/153 (26%), Positives = 73/153 (47%)
Query: 11 WKDF--PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAI 68
W+ F + +RVLL++ D + L Y V N +A D + + +
Sbjct: 69 WERFLHVRTIRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVL 128
Query: 69 VEVTTSNTDGS---FKFL--ETAKDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDK 123
EV G K L ++ +++P I+ S+ + + KC++ GAV+FL KP+ +++
Sbjct: 129 TEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNE 188
Query: 124 LRNLWQHVVHKAFNAGGSALSDSLKPVKESVVS 156
L+ LWQHV + ++ GS ++SV S
Sbjct: 189 LKILWQHVWRRCQSSSGSGSESGTHQTQKSVKS 221
Score = 38 (18.4 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 458 NGPYSSFPQGASGYHNSGVDDNS 480
NGPY S +G N G D+ +
Sbjct: 618 NGPYGSSNGMNAGGMNMGSDNGA 640
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 134 (52.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 314 NRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362
+++ + AV LG+ A+P I++LM V+GLTR NVASHLQKYR++ + +
Sbjct: 115 HKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 163
>TAIR|locus:2205339 [details] [associations]
symbol:HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY
ROOT SHORTENING 1" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0016036 "cellular response to
phosphate starvation" evidence=IMP] [GO:0080022 "primary root
development" evidence=IMP] [GO:0000041 "transition metal ion
transport" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011810
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0080022 GO:GO:0016036 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237574 EMBL:AF367336 EMBL:AY124865
IPI:IPI00529437 PIR:F86267 RefSeq:NP_563926.1 UniGene:At.20366
ProteinModelPortal:Q9FX67 SMR:Q9FX67 STRING:Q9FX67
EnsemblPlants:AT1G13300.1 GeneID:837890 KEGG:ath:AT1G13300
TAIR:At1g13300 eggNOG:NOG274505 InParanoid:Q9FX67 OMA:TRDESMR
PhylomeDB:Q9FX67 ProtClustDB:CLSN2687791 Genevestigator:Q9FX67
Uniprot:Q9FX67
Length = 344
Score = 126 (49.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 42/149 (28%), Positives = 68/149 (45%)
Query: 216 QDNTNFSTE--KESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGS 273
+++ F E + D E K ++ S+ Q D P P+E +++E + S
Sbjct: 97 EEDEEFDDEHGNHDPDNDSEDKNTKSDWLKSVQLWN-QPDHPLLPKEERLQQETMTRDES 155
Query: 274 KTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSC-GNKANRKKMKAVEQLGVDQ-AIP 331
+ M+ + +G E Q C ++ +R+ + A++ LG A P
Sbjct: 156 MRKDPMV------NGGEGRKREAEKDGGGGRKQRRCWSSQLHRRFLNALQHLGGPHVATP 209
Query: 332 SRILELMKVEGLTRHNVASHLQKYRMHRR 360
+I E MKV+GLT V SHLQKYR+H R
Sbjct: 210 KQIREFMKVDGLTNDEVKSHLQKYRLHTR 238
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 126 (49.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 314 NRKKMKAVEQLGVDQ-AIPSRILELMKVEGLTRHNVASHLQKYRMH-RRHIL 363
+RK + A+ +LG Q A P +I +LMKV+GLT V SHLQKYRMH R+H L
Sbjct: 227 HRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIRKHPL 278
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 125 (49.1 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 297 ENPSKASGLQNSCGN-KANRKKMKAVEQLGVDQ-AIPSRILELMKVEGLTRHNVASHLQK 354
+ S ++ Q C + + +R+ + A++QLG A P +I +LMKV+GLT V SHLQK
Sbjct: 201 QKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQK 260
Query: 355 YRMHRR 360
YR+H R
Sbjct: 261 YRLHTR 266
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 38/154 (24%), Positives = 76/154 (49%)
Query: 212 DIDCQDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTL---QEDKPQRPRETIVKEEHD 268
D D +++ + T+ + +++ +S+++++ + ++ + ++D+ Q ET+V+
Sbjct: 104 DDDDEEHQSHETDIDFDDKNMKSEWLKSVQLWNQSDAVVSNNRQDRSQEKTETLVELIKI 163
Query: 269 PTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSC-GNKANRKKMKAVEQLGVD 327
+K N+ D G + C + +R+ + A++QLG
Sbjct: 164 NDEAAKKNNNIKSPVTTSDGGSGGG----GGRRGQRKNRRCWSQELHRRFLNALKQLGGP 219
Query: 328 Q-AIPSRILELMKVEGLTRHNVASHLQKYRMHRR 360
A P +I ++MKV+GLT V SHLQKYR+H R
Sbjct: 220 HVATPKQIRDIMKVDGLTNDEVKSHLQKYRLHAR 253
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 306 QNSCGN-KANRKKMKAVEQLGVDQ-AIPSRILELMKVEGLTRHNVASHLQKYRMHRR 360
Q C + + +R+ + A++QLG A P +I + MKV+GLT V SHLQKYR+H R
Sbjct: 216 QRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHTR 272
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 107 (42.7 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 298 NPSKASGLQNSCGNKANRKKMKAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKYR 356
N S AS + ++ + + + AV QLG D+A P +L +M V+GLT ++V SHLQKYR
Sbjct: 9 NSSHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 68
Query: 357 M 357
+
Sbjct: 69 L 69
Score = 49 (22.3 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 469 SGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKV 500
+ YH S D+ A Q S L AEE +DKV
Sbjct: 253 TSYHQS---DHVLAFDQPSTSLLGAEEQLDKV 281
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 546 516 0.00088 119 3 11 23 0.46 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 627 (67 KB)
Total size of DFA: 335 KB (2168 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.06u 0.12s 50.18t Elapsed: 00:00:03
Total cpu time: 50.06u 0.12s 50.18t Elapsed: 00:00:03
Start: Mon May 20 17:12:40 2013 End: Mon May 20 17:12:43 2013